Simulation of Exome-wide CNV data for case control samples

Simulation outline

For given type of CNV (e.g. duplication) we first simulate all the variants across exome, then assign these simulated CNVs to genes. For case samples we expect an enrichment in causal genes and the enrichment should be quantified by relative risk of a CNV's contribution to disease when presented in causal gene vs. non causal gene.

Parameters

We define causal CNV as CNV in causal gene, and denote it as CCNV. Likewise we have NCNV for non-causal CNV.

Parameter Description Value
$\lambda$ Average number of CNV per exome 100 for dup, 20 for del (FIXME: reference required)
$p_L$ Parameter for Geometric distribution that models length of CNV To be fitted from data
$\gamma$ Odds ratio of CCNV To draw from distribution Gamma(5, 1)
$p_0$ Pr(case | NCNV) It can be approximated by $k$ = Pr(case)
$p_1$ Pr(case | CCNV) To be calculated from $p_0$ and $\gamma$
$N_0, N_1$ Case / Ctrl sample size Various numbers
$k$ The prevalence of disease (FIXME: reference required)

Simulation steps

The steps below simulates exome data for single individual case or control for one type of CNV.

Step 1: Simulate number of CNV per exome

Simply drawn from $M = Pois(\lambda)$

Step 2: Simulate CNV for an exome

Positions of CNVs

Distribution of CNV in exome is non-uniform. We need to obtain empirical distribution for CNV hotspots and simulate CNV positions to reflect the hotspot pattern.

First, separate genome to 100K blocks and find from real data how many CNVs falls in each block (start position is in a block). We can visualize this via histogram. This gives the pattern of CNV hotspots in exome.

Then sample with replacement $M$ such blocks from all blocks based on frequency of their apparences (weighted uniform sample).

Finally for each block sampled we put a CNV start position in it, uniformly. Now we need the length of CNV to determine the end positions.

Length of CNVs

We can mimic the distribution of the length of CNV. There are 3 ways to do it:

  1. Fit a mixture of geometric/gamma/gaussian using real data: mixing long tail, short tail and normal tail distributions.
  2. Fit a geometric distribution
  3. Instead of fitting anything we simply draw $M$ CNV from real data.

Here we adopt option 3. We have tried option 1 and 2 but the result is not good.

Step 3: Tag each simulated CNV by causal genes

Causal/noncausal gene positions are supposed to be determined by literature. But we can simulate randomly for starters. Today (2017/02) as a first simple pass we call every CNV within the following 100 genes as causal CNV and non-causal elsewhere:

In [1]:
causal_genes = ['RAB2B', 'CHD8', 'TOX4', 'SNORD8', 'METTL3', 'SALL2', 'SNORD9', 'SUPT16H', 'RPGRIP1', 'MIR3180-3', 'MIR3670-1', 'NOMO2', 'MIR6511A4', 'NPIPA8', 'FSIP2', 'FSIP2-AS1', 'LOC101927196', 'ATP6V1E1', 'BCL2L13', 'BID', 'CECR1', 'CECR2', 'CECR3', 'CECR5', 'CECR5-AS1', 'CECR6', 'CECR7', 'FLJ41941', 'GAB4', 'IL17RA', 'LINC00528', 'LOC100996342', 'LOC100996415', 'LOC101929372', 'LOC105379550', 'MICAL3', 'MIR3198-1', 'MIR648', 'PEX26', 'SLC25A18', 'TUBA8', 'USP18', 'FAM72C', 'FAM72D', 'LINC01138', 'NBPF8', 'PPIAL4G', 'MIR6770-2', 'MIR3179-1', 'MIR3180-2', 'MACROD2', 'FAM189A1', 'LOC100130111', 'MACROD2-AS1', 'LINC00623', 'LINC00869', 'PPIAL4C', 'MIR3680-2', 'ABCC6P1', 'HNRNPC', 'APBA2', 'C22orf39', 'CDC45', 'CLDN5', 'CLTCL1', 'DGCR14', 'DGCR2', 'GNB1L', 'GOLGA6L7P', 'GOLGA8M', 'GP1BB', 'GSC2', 'HIRA', 'LINC00895', 'LINC01311', 'LOC100289656', 'MRPL40', 'NPIPB4', 'NSMCE3', 'PDCD6IPP2', 'SEPT5', 'SEPT5-GP1BB', 'SLC25A1', 'TBX1', 'TSSK2', 'UFD1L', 'WHAMMP2', 'HSFY1P1', 'PFN1P2', 'XKR3', 'OR4A47', 'C5orf17', 'CNTN4', 'EXOC4', 'LINC00540', 'LOC101927967', 'LRRC4C', 'SMG1P2', 'SPRY2', 'LOC100288162']

This list of genes are the top genes from enrichment analysis.

Step 3: Get the probability of a sample being case give all CNVs

Suppose $p$ is baseline probability of the disease (prevalence), and $r_0$ is the baseline odds $\frac{p}{1-p}$.

Given simulated CNVs in a sample, the probability for the sample to be case is $p_1$, then the odds ratio for case is $r_1 = r_0 \times R = \frac{p_1}{1-p_1}$, $R$ is the combined relative risks of the all CNVs involved in a sample. Each $R_i$ for a causal CNVs is to be sampled from Gamma(1,5), $R = \prod_{i=1}^{\#CNV} R_i$. For noncausal CNV, the $R_i$ is 1. Then $P(case|all\ CNVs) = p_1 = \frac{r_0*R}{1+r_0*R}$, and $P(ctrl|all\ CNVs) = 1-p_1$.

Since $p_1$ is small, about $\frac{1}{p} * n$ trials are to be simulated in order to obtain $n$ cases. However, $n$ controls are easy to obtain.

Implementation

In [2]:
import random
from random import randint
import pandas as pd
from pandasql import sqldf
import numpy as np
import matplotlib.pyplot as plt
import seaborn as sns
import scipy
from scipy import stats
import math
from collections import Counter
import scipy.special
from scipy.misc import logsumexp
from sklearn.mixture import GaussianMixture
from datetime import datetime
import pickle
from fisher import pvalue

%matplotlib inline


def load_reference_gene(filename):
    '''Load reference gene database'''
    ref_gene = pd.read_table(filename, compression="gzip", sep="\t", 
                         header = None, usecols=(1,2,4,5,12), 
                         names = ["tx_name", "chrom", "tx_start", "tx_end", "gene_name"])
    return ref_gene.drop_duplicates(subset=("chrom", "tx_start", "tx_end"))

def load_cnv_data(filename):
    '''load cnv data'''
    cnvbed = {}
    dataset = None
    for line in open(filename).readlines():
        if not line.startswith("chr"):
            dataset = line.strip().split()[1].lstrip("name=")
            cnvbed[dataset] = {}
            continue
        line = line.strip().split()
        if not line[0] in cnvbed[dataset]:
            cnvbed[dataset][line[0]] = []
        cnvbed[dataset][line[0]].append((int(line[1]),int(line[2])))

    for dataset in cnvbed.keys():
        for chrom in cnvbed[dataset]:
            cnvbed[dataset][chrom].sort()

    cnvbed_df = {}
    for dataset in cnvbed.keys():
        cnvbed_df[dataset] = {"chrom":[], "cnv_start":[], "cnv_end":[]}
        for chrom in cnvbed[dataset]:
            start, end = tuple(zip(*cnvbed[dataset][chrom])) 
            cnvbed_df[dataset]["chrom"].extend([chrom] * len(start))
            cnvbed_df[dataset]["cnv_start"] += list(start)
            cnvbed_df[dataset]["cnv_end"] += list(end)
        cnvbed_df[dataset] = pd.DataFrame.from_dict(cnvbed_df[dataset]).drop_duplicates(
                                                subset=("chrom", "cnv_start", "cnv_end"))
    return cnvbed_df

def count_cnv_by_block(df, block_size):
    # check how many CNVs start in block_size = 100K blocks genome
    # this cell produces `block_counts`: ((chrom, block_position), count)
    def count_by_blocks(chrom):
        data = df.query('chrom == "{}"'.format(chrom))['cnv_start'].tolist()
        start_pos = min(data)
        end_pos = max(data)
        counts, bins = np.histogram(data, bins = int((end_pos - start_pos) / block_size) + 1, 
                                range = (start_pos, end_pos))
        return counts, [int(x) for x in bins]    
    #
    block_counts = []
    for chrom in set(df['chrom']):
        counts, bins = count_by_blocks(chrom)
        block_counts.extend([((chrom, x), y) for x, y in zip(bins, counts)])
    return block_counts

def fit_truncated_gaussian_mix(x, k = 10):
    x = x.extend([-i for i in x])
    clf = GaussianMixture(n_components=1, covariance_type='full')
    clf.fit(x)
    return clf

def sample_cnv_length(data, mean_num_cnv):
    return np.random.choice(data, np.random.poisson(mean_num_cnv))

def get_sample_blocks(block_counts, num_cnv):
    '''sample blocks from blocks across genome'''
    probability_distribution = np.array([x[1] for x in block_counts])
    sample_idx = np.random.choice(range(len(block_counts)), num_cnv, p = probability_distribution / sum(probability_distribution))
    return sorted([block_counts[idx][0] for idx in sample_idx])

def assign_cnv_to_sample(sample_blocks, sample_len, block_size):
    samples = {'chrom': [], 'cnv_start': [], 'cnv_terminate': []}
    for x, y in zip(sample_blocks, sample_len):
        start_pos = randint(x[1], x[1] + block_size)
        samples['cnv_start'].append(start_pos)
        samples['cnv_terminate'].append(start_pos + int(y))
        samples['chrom'].append(x[0])
    return pd.DataFrame(samples)

def annotate_samples(samples, gene_df):
    query = """
        SELECT cnv.chrom, cnv.cnv_start, cnv.cnv_terminate, gene.tx_name, gene.gene_name
        FROM samples cnv LEFT JOIN gene_df gene
        WHERE cnv.chrom == gene.chrom 
        AND (
        (cnv.cnv_start >= gene.tx_start AND cnv.cnv_start <= gene.tx_end)
        OR
        (cnv.cnv_terminate >= gene.tx_start AND cnv.cnv_terminate <= gene.tx_end)
        OR
        (cnv.cnv_start <= gene.tx_start AND cnv.cnv_terminate >= gene.tx_end)
        )
        """
        # drop_duplicates(): make sure the case that CNV spread multiple txs but one gene to be counted only once
    return sqldf(query).drop_duplicates(subset=("chrom", "cnv_start", "cnv_terminate", "gene_name"))

def get_causal_genes(causal_genes, sample_genes):
    '''get causal genes'''
    return [x for x in causal_genes if x in sample_genes]

def get_ccnv():
    '''get causal cnvs'''
    return None
    
def p_case(p, num_causal_genes_in_sample, sim_args):
    if num_causal_genes_in_sample == 0:
        return p
    baseline_odds = p / (1 - p)
    odds_ratio = np.prod([np.random.gamma(sim_args['shape'], sim_args['scale']) 
                          for x in range(num_causal_genes_in_sample)])
    odds = baseline_odds * odds_ratio
    return odds / (1 + odds)

args = {
'block_size': 100000,
'avg_cnv_per_individual': 5,
'causal_genes': causal_genes,
'n_case': 3000,
'n_ctrl': 3000,
'odds_ratio_params': {'shape': 5, 'scale': 1},
'prevalence': 0.005
}

def simulate(refgene, cnv_data, args):
    df = cnv_data.drop_duplicates(subset=("chrom", "cnv_start", "cnv_end"))
    block_counts = count_cnv_by_block(df, args['block_size'])
    cnv_length = cnv_data['cnv_end'] - cnv_data['cnv_start']
    status = 1
    case_data = []
    ctrl_data = []
    debug = {'p': [], 'niter': 0, 'time': [str(datetime.now()), None]}
    
    while(status):
        sample_len = sample_cnv_length(cnv_length, args['avg_cnv_per_individual'])
        sample_blocks = get_sample_blocks(block_counts, len(sample_len))
        samples = assign_cnv_to_sample(sample_blocks, sample_len, args['block_size'])
        samples = annotate_samples(samples, refgene)
        causal_genes_in_sample = get_causal_genes(args['causal_genes'], samples['gene_name'].tolist())
        p = p_case(args['prevalence'], len(causal_genes_in_sample), args['odds_ratio_params'])
        if random.random() < p and len(case_data) < args['n_case']:
            # sample data is a case
            case_data.append(samples)
            debug['p'].append(p)
        if random.random() > p and len(ctrl_data) < args['n_ctrl']:
            ctrl_data.append(samples)
            debug['p'].append(p)
        if len(case_data) == args['n_case'] and len(ctrl_data) == args['n_ctrl']:
            status = 0
        debug['niter'] += 1
    debug['time'][1] = str(datetime.now())
    return {'case': case_data, 'ctrl': ctrl_data, 'debug': debug}

def save_data(data, filename):
    pickle.dump(data, open(filename, "wb"))

def load_data(filename):
    return pickle.load(open(filename, "rb"))
In [3]:
# Load reference gene database
gene_df = load_reference_gene("data/refGene.txt.gz")

Step 1 & 2

In [4]:
cnvbed_df = load_cnv_data("data/ISC-r1.CNV.bed")
# print (cnvbed_df)
In [5]:
# Get 2 data-sets from my data for del and dup
cnvdel = [cnvbed_df["delCases"], cnvbed_df["delControls"]]
cnvdup = [cnvbed_df["dupCases"], cnvbed_df["dupControls"]]
#cnvdel = pd.concat(cnvdel).drop_duplicates(subset=("chrom", "cnv_start", "cnv_end"))
#print (len(list(cnvdel["cnv_start"])))
del_df = pd.concat(cnvdel)
dup_df = pd.concat(cnvdup)
In [6]:
# check how many CNVs start in block_size = 100K blocks genome
# this cell produces `block_counts`: ((chrom, block_position), count)
block_counts = count_cnv_by_block(dup_df, 100000)
# print(block_counts)
In [7]:
# length of CNVs, and fit mixed geometric distribution
cnv_data = pd.concat([cnvbed_df['delCases'], cnvbed_df['delControls']])
del_length = cnv_data['cnv_end'] - cnv_data['cnv_start']
sns.distplot(del_length, 500)
sns.plt.xlim(0, 1000000)
#sns.distplot(dup_length[0:1000], color="red")
#plt.plot(cnv_length["delControls"])
Out[7]:
(0, 1000000)
In [8]:
# violin plot
import plotly
plotly.offline.init_notebook_mode()
#fig = plotly.figure_factory.create_violin(list(dup_block.values()), colors='#604d9e')
#plotly.offline.iplot(fig, filename='One Violin')
In [9]:
sample_len_del = sample_cnv_length(del_length, 80)
#print(sample_len_del)
In [10]:
# Now I get n_del sample CNVs but I only know which block it belongs to
# sample_blocks is just a sample set of `block_counts` removing the `count` part: [(chrom, block_position)]
sample_blocks = get_sample_blocks(block_counts, len(sample_len_del))
In [11]:
# Now for each sample block, I:
# 1. give it a random start position unif(block_start, block_start + block_size)
# 2. give it a random end position using L previously sampled
samples = assign_cnv_to_sample(sample_blocks, sample_len_del, 100000)
# print(samples)

Step 3

In [12]:
# Annotate data with gene names
samples = annotate_samples(samples, gene_df)
print(samples)

     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0     chr1     703197         862909     NM_152486        SAMD11
1     chr1     703197         862909     NR_024321     LINC00115
2     chr1     703197         862909     NR_026874  LOC100130417
3     chr1     703197         862909     NR_027055        FAM41C
4     chr1     703197         862909     NR_033908  LOC100288069
5     chr1     703197         862909     NR_047519     LINC01128
8     chr1     703197         862909     NR_103536        FAM87B
9     chr1  143068366      143275340     NR_110761  LOC102723769
10    chr1  143058086      143221587     NR_110761  LOC102723769
11    chr1  232970761      233151871     NM_014801         PCNX2
12    chr1  232970761      233151871     NR_138026         NTPCR
14    chr1  243230063      243378798     NM_014812        CEP170
15    chr1  243230063      243378798     NR_029401     LINC01347
16   chr10     118129         226844  NM_001202464       ZMYND11
21   chr10   44470409       44808526  NM_001258000     C10orf142
22   chr10   44470409       44808526     NR_136147     LINC00841
23   chr10   68382465       68513781  NM_001127384        CTNNA3
25   chr11    1696821        1843822  NM_001012416      KRTAP5-6
26   chr11    1696821        1843822  NM_001170820       IFITM10
27   chr11    1696821        1843822     NM_001909          CTSD
28   chr11    1696821        1843822     NR_026642        FAM99B
29   chr11   32972192       33134074  NM_001076786         QSER1
30   chr11   32972192       33134074  NM_001077242        DEPDC7
31   chr11   32972192       33134074  NM_001145541       TCP11L1
32   chr11   32972192       33134074     NM_001326         CSTF3
35   chr11   32972192       33134074     NR_015451     LINC00294
36   chr12   19388006       19814013  NM_001143821       PLEKHA5
38   chr12   19388006       19814013  NM_001267043         AEBP2
41   chr12  110669940      110841459  NM_001137664        ANAPC7
43   chr12  110669940      110841459     NM_170665        ATP2A2
..     ...        ...            ...           ...           ...
311   chr7  100597528      101106574     NR_039797       MIR4653
312   chr7  100597528      101106574     NR_110115  LOC101927746
313   chr7  100597528      101106574     NR_120519  LOC102724094
314   chr7  100583022      101101432     NM_000602      SERPINE1
315   chr7  100583022      101101432  NM_001040105         MUC17
316   chr7  100583022      101101432     NM_001084         PLOD3
317   chr7  100583022      101101432  NM_001130820         IFT22
318   chr7  100583022      101101432  NM_001164462         MUC12
319   chr7  100583022      101101432  NM_001185080        CLDN15
320   chr7  100583022      101101432     NM_001283         AP1S1
321   chr7  100583022      101101432  NM_001287147        MOGAT3
322   chr7  100583022      101101432     NM_003378           VGF
323   chr7  100583022      101101432     NM_005960         MUC3A
324   chr7  100583022      101101432     NM_006349        ZNHIT1
326   chr7  100583022      101101432     NM_016068          FIS1
327   chr7  100583022      101101432     NM_030961        TRIM56
328   chr7  100583022      101101432     NM_133457       COL26A1
329   chr7  100583022      101101432     NM_198571         NAT16
330   chr7  100583022      101101432     NR_039797       MIR4653
331   chr7  100583022      101101432     NR_110115  LOC101927746
332   chr7  100583022      101101432     NR_120519  LOC102724094
333   chr8   43101290       43245660  NM_001005365         POTEA
334   chr8   75936158       76667815  NM_001286778      CRISPLD1
335   chr8   75936158       76667815  NM_001330561         HNF4G
338   chr8   75936158       76667815     NR_103849         CASC9
340   chr9  137239119      137611693     NM_000093        COL5A1
341   chr9  137239119      137611693  NM_001291920          RXRA
344   chr9  137239119      137611693     NR_039816       MIR4669
345   chr9  137239119      137611693     NR_138049    COL5A1-AS1
346   chr9  138166410      138267536     NM_173520       C9orf62

[249 rows x 5 columns]
In [13]:
# get causal genes in data
causal_genes_in_sample = get_causal_genes(causal_genes, samples['gene_name'].tolist())
print (causal_genes)
print (samples['gene_name'].tolist())
print(causal_genes_in_sample)

['RAB2B', 'CHD8', 'TOX4', 'SNORD8', 'METTL3', 'SALL2', 'SNORD9', 'SUPT16H', 'RPGRIP1', 'MIR3180-3', 'MIR3670-1', 'NOMO2', 'MIR6511A4', 'NPIPA8', 'FSIP2', 'FSIP2-AS1', 'LOC101927196', 'ATP6V1E1', 'BCL2L13', 'BID', 'CECR1', 'CECR2', 'CECR3', 'CECR5', 'CECR5-AS1', 'CECR6', 'CECR7', 'FLJ41941', 'GAB4', 'IL17RA', 'LINC00528', 'LOC100996342', 'LOC100996415', 'LOC101929372', 'LOC105379550', 'MICAL3', 'MIR3198-1', 'MIR648', 'PEX26', 'SLC25A18', 'TUBA8', 'USP18', 'FAM72C', 'FAM72D', 'LINC01138', 'NBPF8', 'PPIAL4G', 'MIR6770-2', 'MIR3179-1', 'MIR3180-2', 'MACROD2', 'FAM189A1', 'LOC100130111', 'MACROD2-AS1', 'LINC00623', 'LINC00869', 'PPIAL4C', 'MIR3680-2', 'ABCC6P1', 'HNRNPC', 'APBA2', 'C22orf39', 'CDC45', 'CLDN5', 'CLTCL1', 'DGCR14', 'DGCR2', 'GNB1L', 'GOLGA6L7P', 'GOLGA8M', 'GP1BB', 'GSC2', 'HIRA', 'LINC00895', 'LINC01311', 'LOC100289656', 'MRPL40', 'NPIPB4', 'NSMCE3', 'PDCD6IPP2', 'SEPT5', 'SEPT5-GP1BB', 'SLC25A1', 'TBX1', 'TSSK2', 'UFD1L', 'WHAMMP2', 'HSFY1P1', 'PFN1P2', 'XKR3', 'OR4A47', 'C5orf17', 'CNTN4', 'EXOC4', 'LINC00540', 'LOC101927967', 'LRRC4C', 'SMG1P2', 'SPRY2', 'LOC100288162']
['SAMD11', 'LINC00115', 'LOC100130417', 'FAM41C', 'LOC100288069', 'LINC01128', 'FAM87B', 'LOC102723769', 'LOC102723769', 'PCNX2', 'NTPCR', 'CEP170', 'LINC01347', 'ZMYND11', 'C10orf142', 'LINC00841', 'CTNNA3', 'KRTAP5-6', 'IFITM10', 'CTSD', 'FAM99B', 'QSER1', 'DEPDC7', 'TCP11L1', 'CSTF3', 'LINC00294', 'PLEKHA5', 'AEBP2', 'ANAPC7', 'ATP2A2', 'LINC00424', 'RNF219-AS1', 'MCF2L', 'ATP11A', 'MCF2L-AS1', 'NRXN3', 'FAM189A1', 'DYX1C1', 'C15orf65', 'PIGBOS1', 'RAB27A', 'CCPG1', 'PIGB', 'RSL24D1', 'MIR628', 'DYX1C1-CCPG1', 'C15orf40', 'TM6SF1', 'BTBD1', 'FAM103A1', 'MIR4515', 'MYH11', 'ABCC6', 'MPV17L', 'C16orf45', 'NDE1', 'KIAA0430', 'NTAN1', 'NPIPA5', 'PDXDC1', 'RRN3', 'ABCC1', 'NPIPA1', 'NOMO1', 'ABCC6P2', 'MIR484', 'MIR3179-1', 'MIR3180-1', 'MIR3180-2', 'MIR3180-4', 'LOC100288162', 'MIR6506', 'MIR6511B1', 'MIR6511B2', 'MIR6511A3', 'MIR6770-2', 'PKD1P6-NPIPP1', 'LOC100505915', 'MIR3670-4', 'FOPNL', 'NOMO2', 'NPIPA8', 'ABCC6P1', 'MIR3179-1', 'MIR3180-2', 'MIR3180-3', 'MIR3670-1', 'LOC100288162', 'MIR6511A4', 'MIR6770-2', 'NPIPB3', 'LOC100190986', 'SMG1P3', 'SNX29P1', 'SPN', 'QPRT', 'LOC388242', 'MIR3680-2', 'SMG1P2', 'ADORA2B', 'CUEDC1', 'MRPS23', 'LLGL2', 'CASKIN2', 'MYO15B', 'TMEM94', 'GRB2', 'TSEN54', 'MIR3678', 'MIR6785', 'ZBTB14', 'AKAIN1', 'EPB41L3', 'LINC00667', 'LINC00526', 'INSR', 'ZNF557', 'MBD3L5', 'MBD3L4', 'MBD3L3', 'ADGRE1', 'MBD3L2', 'ADGRE4P', 'FLJ25758', 'PDE4A', 'ILF3', 'SLC44A2', 'S1PR5', 'ATG4D', 'AP1M2', 'CDKN2D', 'KEAP1', 'KRI1', 'ILF3-AS1', 'MIR1238', 'ZNF737', 'ZNF826P', 'LHCGR', 'PPP1R21', 'GTF2A1L', 'STON1-GTF2A1L', 'STON1', 'FSHR', 'PPP4R3B', 'CFAP36', 'POTEE', 'PLEKHB2', 'LOC440910', 'DAPL1', 'WDSUB1', 'TANC1', 'BAZ2B', 'MIR6888', 'HECW2', 'CARF', 'NBEAL1', 'BMPR2', 'ICA1L', 'WDR12', 'FAM117B', 'OR11H1', 'POTEH', 'POTEH-AS1', 'BMS1P18', 'DUXAP8', 'LINC01297', 'BMS1P22', 'CCT8L2', 'TPTEP1', 'ANKRD62P1-PARP4P3', 'CHL1', 'CHL1-AS2', 'NGLY1', 'OXSM', 'LRTM1', 'CACNA2D3', 'CACNA2D3-AS1', 'LOC728290', 'C3orf58', 'SLC9A9', 'C3orf58', 'SLC9A9', 'LINC01209', 'ZNF718', 'ZNF595', 'ZNF876P', 'ZNF732', 'ZNF876P', 'ZNF718', 'LRRC14B', 'SDHA', 'PLEKHG4B', 'CCDC127', 'MAST4', 'CD180', 'ADAMTS2', 'GPRC6A', 'RFX6', 'CHN2', 'PRR15', 'ZNF138', 'ZNF107', 'ZNF273', 'MIR6839', 'SERPINE1', 'MUC17', 'PLOD3', 'IFT22', 'MUC12', 'CLDN15', 'AP1S1', 'MOGAT3', 'VGF', 'MUC3A', 'ZNHIT1', 'FIS1', 'TRIM56', 'COL26A1', 'NAT16', 'MIR4653', 'LOC101927746', 'LOC102724094', 'SERPINE1', 'MUC17', 'PLOD3', 'IFT22', 'MUC12', 'CLDN15', 'AP1S1', 'MOGAT3', 'VGF', 'MUC3A', 'ZNHIT1', 'FIS1', 'TRIM56', 'COL26A1', 'NAT16', 'MIR4653', 'LOC101927746', 'LOC102724094', 'POTEA', 'CRISPLD1', 'HNF4G', 'CASC9', 'COL5A1', 'RXRA', 'MIR4669', 'COL5A1-AS1', 'C9orf62']
['MIR3180-3', 'MIR3670-1', 'NOMO2', 'MIR6511A4', 'NPIPA8', 'MIR6770-2', 'MIR3179-1', 'MIR3180-2', 'FAM189A1', 'MIR3680-2', 'ABCC6P1', 'SMG1P2', 'LOC100288162']

Step 4

In [14]:
k = 0.001 # prevalence of the disease
sim_args = {'shape': 5, 'scale': 1}

# print (len(causal_genes_in_sample))
def p_case(p, num_causal_genes_in_sample, sim_args):
    baseline_odds = p / (1 - p)
    odds_ratio = np.prod([np.random.gamma(sim_args['shape'], sim_args['scale']) 
                          for x in range(num_causal_genes_in_sample)])
    odds = baseline_odds * odds_ratio
    return odds / (1 + odds)
num_causal_genes_in_sample = len(causal_genes_in_sample)
p = p_case(k, num_causal_genes_in_sample, sim_args)
print(p)

0.999995057068

Putting all together

In [156]:
# main procedure
genes = load_reference_gene("data/refGene.txt.gz")
empirical_data = load_cnv_data("data/ISC-r1.CNV.bed")
sample_dup = simulate(genes, pd.concat([empirical_data['dupCases'], empirical_data['dupControls']]), args)
sample_del = simulate(genes, pd.concat([empirical_data['delCases'], empirical_data['delControls']]), args)
save_data(sample_dup, 'dup_sample_3000.pkl')
save_data(sample_del, 'del_sample_3000.pkl')
print(sample_del['debug'])

{'time': ['2017-02-14 23:20:37.696774', '2017-02-15 02:11:10.728184'], 'niter': 25344, 'p': [0.0050000000000000001, 0.0050000000000000001, 0.081212745743667186, 0.0050000000000000001, 0.05727340356938166, 0.0050000000000000001, 0.99999222266324905, 0.0050000000000000001, 0.0050000000000000001, 0.0050000000000000001, 0.0050000000000000001, 0.0050000000000000001, 0.0050000000000000001, 0.0050000000000000001, 0.0050000000000000001, 0.0050000000000000001, 0.0050000000000000001, 0.99999998959487524, 0.0050000000000000001, 0.031248863024325561, 0.0050000000000000001, 0.0050000000000000001, 0.99848043357591121, 0.0050000000000000001, 0.0050000000000000001, 0.0050000000000000001, 0.0050000000000000001, 0.016045317074489734, 0.0050000000000000001, 0.020135187143938107, 0.99997077618896779, 0.0050000000000000001, 0.0050000000000000001, 0.0050000000000000001, 0.0050000000000000001, 0.1786512565847572, 0.1786512565847572, 0.0050000000000000001, 0.045735862108623022, 0.0050000000000000001, 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In [15]:
del_sample = load_data("del_sample_3000.pkl")
print (del_sample)
dup_sample = load_data("dup_sample_3000.pkl")
#print (del_sample)
del_sample_case = pd.concat(del_sample["case"])
#print (del_sample_case)
query = '''
SELECT chrom, gene_name, count(gene_name)
FROM del_sample_case
GROUP BY chrom, gene_name
ORDER BY count(gene_name) DESC
'''
del_sample_case1 = sqldf(query).rename(columns={"count(gene_name)": "n_delcase_gene"})
#print (del_sample_case1)
n_delCases = len(del_sample_case1["gene_name"])
#print (n_delCases)

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0.54713495372672805, 0.95455925550020981, 0.8496046354542679, 0.99999586752844249, 0.9576879002990577, 0.74400813402462163, 0.99989948230633607, 0.19768500572872402, 0.44734573066965116, 0.97414216014000043, 0.99469364833391838, 0.18101966867487887, 0.18381521753756869, 0.47138864512825968, 0.71928633620701732, 0.74008615180127846, 0.9999893526457555, 0.99991498636852583, 0.99416820481592161, 0.94025577012979489, 0.0050000000000000001, 0.016059439313144672, 0.049893745147819843, 0.88322556122449958, 0.99945517398558159, 0.95621893096419996, 0.999978709379578, 0.99995900375012015, 0.99999999990847999, 0.99989871494450666, 0.97395385112587074, 0.99898828829085073, 0.75725880338278229, 0.99995579504329712, 0.87688264918367298, 0.0050000000000000001, 0.50799123712928895, 0.99999848052965612, 0.90514540541090238, 0.99960404987044482, 0.99973464005525103, 0.99993518957042615, 0.99118872463815233, 0.97779460697299669, 0.0050000000000000001, 0.99780375802725341, 0.64789421282084325, 0.94311235303154839, 0.13130965068748479, 0.99997161603243478, 0.9999712393940553, 0.9998072213396284, 0.99983481732995505, 0.95446801598230691, 0.16902120411308422, 0.99829383062039723, 0.7880642419525562, 0.98120832014122927, 0.99991899609322876, 0.99821147908176155, 0.99999999996160882, 0.81260593017535465, 0.89728671238809721, 0.99996352942213684, 0.99998927420329142, 0.99980079594462035, 0.99854080572935811, 0.99692258738891559, 0.99736082215413568, 0.99999999966612219, 0.99217904483717212, 0.99233308652198871, 0.94190321735385263, 0.99989383912950247, 0.99999817320729045, 0.99638478878543713, 0.0050000000000000001, 0.96332260502346723, 0.99643701518597982, 0.088936526439787972, 0.90981132188487224, 0.96362616761782016, 0.43075936604629605, 0.99735755457793218, 0.56271925983671345, 0.97343239182306929, 0.96629639683871915, 0.99841966669393301, 0.61305738180087688, 0.95442749064318388, 0.15873290307325288, 0.99999510404877545, 0.99445937236037907, 0.99996891436517366, 0.85931685164233096, 0.96848381794309091, 0.96700310189135152, 0.56245233365821257, 0.958252122990085, 0.97936001699118669, 0.99434736040510174, 0.91641243387594051, 0.84748372801913741, 0.96527068661135973, 0.95228599873712017, 0.98082861564764479, 0.75540045475017681, 0.99824526742995534, 0.99999999859890076, 0.99041794416885598, 0.71682739977161525, 0.99973490757481509, 0.99999754804632024, 0.99451724273706188, 0.92427662888778639, 0.96045880694014485, 0.99851606579973151, 0.99815069393472267, 0.6149357817128468, 0.62983737563454945, 0.80953318718559064, 0.62163389110543488, 0.99999860555399789, 0.81278607601623498, 0.0050000000000000001, 0.99903725245571495, 0.99999433146729355, 0.17501800284108532, 0.99846046979601277, 0.99211780836679886, 0.78742714338766728, 0.99801355395089175, 0.99244270228829734, 0.77415782675698619, 0.99951184692231188, 0.64190667150920588, 0.99340406356281796, 0.039252178503600778, 0.9098314013919182, 0.99924297372307347, 0.26009409378108878, 0.99948353493588782, 0.99993967317902777, 0.69406180264523321, 0.98322266348007992, 0.99999964957875587, 0.50905614227833018, 0.59195449727155702, 0.99996437668522598, 0.99865329708003969, 0.58591852199990457, 0.99863640073515358, 0.99981010467748199, 0.65823845120986957, 0.99971097898858752, 0.97263898446393904, 0.99942145515215919, 0.99999841156805869], 'niter': 25344, 'time': ['2017-02-14 23:20:37.696774', '2017-02-15 02:11:10.728184']}, 'ctrl': [    chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  185939600      186171683     NM_031935     HMCN1
1   chr16   16494946       17208251     NM_022166     XYLT1
2    chr3  159996862      160100043  NM_001190241     IFT80
4    chr3  189605944      190075621  NM_001134418      P3H2
5    chr3  189605944      190075621  NM_001329148      TP63
9    chr3  189605944      190075621     NM_021101     CLDN1
10   chr3  189605944      190075621     NR_126419  P3H2-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   13008114       13131483  NM_001013407   PRAMEF5
1   chr1   13008114       13131483  NM_001099850  PRAMEF18
2   chr1   13008114       13131483  NM_001100631  PRAMEF22
3   chr1   13008114       13131483  NM_001306072  PRAMEF26
4   chr1   13008114       13131483  NM_001310134  PRAMEF25
5  chr12   27196264       27426499  NM_001080406  C12orf71
6  chr12   27196264       27426499     NM_015000    STK38L
7  chr16   15416559       15541617  NM_001128423    MPV17L
8  chr16   15416559       15541617  NM_001277325    NPIPA5
9  chr16   15416559       15541617     NM_033201  C16orf45,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   29535855       29909558  NM_001030288        SPN
1   chr16   29535855       29909558  NM_001114099     SEZ6L2
2   chr16   29535855       29909558  NM_001256269      KIF22
4   chr16   29535855       29909558  NM_001256443      PRRT2
5   chr16   29535855       29909558  NM_001276275        MAZ
6   chr16   29535855       29909558  NM_001286585      CDIPT
7   chr16   29535855       29909558  NM_001293204        MVP
8   chr16   29535855       29909558  NM_001318249       QPRT
12  chr16   29535855       29909558     NM_024516      PAGR1
13  chr16   29535855       29909558     NM_152338       ZG16
14  chr16   29535855       29909558     NM_175900   C16orf54
15  chr16   29535855       29909558     NR_015396  CDIPT-AS1
17  chr16   29535855       29909558     NR_049833  MIR3680-2
18  chr16   29535855       29909558     NR_135305     SMG1P2
20  chr19   20248262       20494148     NM_052852     ZNF486
21   chr9   39094716       39225149     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   70030904       70618656  NM_001195139          COG4
1   chr16   70030904       70618656  NM_001257172        DDX19B
4   chr16   70030904       70618656  NM_001320525        DDX19A
5   chr16   70030904       70618656     NM_001605          AARS
6   chr16   70030904       70618656     NM_006927       ST3GAL2
8   chr16   70030904       70618656     NM_012426         SF3B3
9   chr16   70030904       70618656     NM_017990          PDPR
10  chr16   70030904       70618656     NM_058219        EXOSC6
11  chr16   70030904       70618656     NM_145059           FUK
12  chr16   70030904       70618656     NM_152456          IL34
13  chr16   70030904       70618656     NM_173619       CLEC18C
14  chr16   70030904       70618656     NR_003079      SNORD111
15  chr16   70030904       70618656     NR_003610       PDXDC2P
16  chr16   70030904       70618656     NR_033959        SMG1P7
17  chr16   70030904       70618656     NR_036265     MIR1972-2
18  chr16   70030904       70618656     NR_037420     SNORD111B
19  chr16   70030904       70618656     NR_039997  LOC100506083
20  chr16   70030904       70618656     NR_126007     LOC400541
21  chr16   70030904       70618656     NR_135173  LOC105371328
22   chr2   97230382       97631516  NM_001115016        KANSL3
23   chr2   97230382       97631516  NM_001122646       FAM178B
25   chr2   97230382       97631516  NM_001293083        FER1L5
26   chr2   97230382       97631516  NM_001322354        LMAN2L
27   chr2   97230382       97631516     NM_016466       ANKRD39
29   chr2   97230382       97631516     NM_017623         CNNM3
30   chr2   97230382       97631516     NM_017789        SEMA4C
31   chr2   97230382       97631516     NM_020184         CNNM4
33   chr2   97230382       97631516     NM_144994       ANKRD23
34   chr2   97230382       97631516     NR_036074       MIR3127
36   chr2   97230382       97631516     NR_110209  LOC101927053
37   chr7   64090368       64367762  NM_001160183        ZNF138
38   chr7   64090368       64367762  NM_001282360        ZNF107
39   chr7   64090368       64367762     NM_021148        ZNF273
42   chr7   64090368       64367762     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12716401       12938541  NM_001013630       AADACL4
1    chr1   12716401       12938541  NM_001013631      HNRNPCL1
2    chr1   12716401       12938541  NM_001080830      PRAMEF12
3    chr1   12716401       12938541  NM_001103170       AADACL3
4    chr1   12716401       12938541  NM_001146181      HNRNPCL3
5    chr1   12716401       12938541  NM_001146344      PRAMEF11
6    chr1   12716401       12938541  NM_001294139       PRAMEF1
7    chr1   12716401       12938541  NM_001302551      HNRNPCL4
9    chr1   12716401       12938541     NM_023014       PRAMEF2
10   chr1   12716401       12938541     NM_152290      C1orf158
11   chr1  233752223      234910664  NM_001012985          COA6
13   chr1  233752223      234910664  NM_001300845       SLC35F3
15   chr1  233752223      234910664     NM_002245         KCNK1
16   chr1  233752223      234910664     NM_005646        TARBP1
18   chr1  233752223      234910664     NM_182972       IRF2BP2
19   chr1  233752223      234910664     NR_033927     LINC00184
20   chr1  233752223      234910664     NR_038426     LINC01354
21   chr1  233752223      234910664     NR_038856     LINC01132
22   chr1  233752223      234910664     NR_039625       MIR4427
23   chr1  233752223      234910664     NR_039818       MIR4671
24   chr1  233752223      234910664     NR_125944  LOC101927787
25   chr1  233752223      234910664     NR_125961  LOC101927765
27   chr2  215434933      215842810     NM_000465         BARD1
28   chr2  215434933      215842810  NM_001080500         VWC2L
29   chr2  215434933      215842810     NM_015657        ABCA12
31   chr2  215434933      215842810     NR_110292  LOC101928103
32  chr20   14736901       15240523  NM_001033087       MACROD2
34  chr20   14736901       15240523     NR_037841   MACROD2-AS1
36   chr7    4117423        4247214  NM_001079653          SDK1
38   chr9   41865921       42006421     NR_003670        FGF7P3
39   chr9   41865921       42006421     NR_015363         GLIDR,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr5      91110         217308  NM_001080478   LRRC14B
1  chr5      91110         217308     NM_052909  PLEKHG4B
2  chr5      91110         217308     NM_145265   CCDC127,     chrom  cnv_start  cnv_terminate       tx_name        gene_name
0   chr19   23809563       23931675     NM_138286           ZNF681
1   chr19   23809563       23931675     NM_138330           ZNF675
2    chr2   97231249       97342522  NM_001115016           KANSL3
3    chr2   97231249       97342522  NM_001293083           FER1L5
5    chr2  110184849      111310281     NM_000272            NPHP1
6    chr2  110184849      111310281  NM_001037866            RGPD6
8    chr2  110184849      111310281  NM_001099289           SH3RF3
11   chr2  110184849      111310281  NM_001205288            LIMS4
13   chr2  110184849      111310281  NM_001321504           SEPT10
15   chr2  110184849      111310281     NM_005054            RGPD5
17   chr2  110184849      111310281     NM_005434             MALL
18   chr2  110184849      111310281     NM_023016           SOWAHC
19   chr2  110184849      111310281     NR_027063        LINC00116
20   chr2  110184849      111310281     NR_027142        LOC440895
22   chr2  110184849      111310281     NR_027145  LIMS3-LOC440895
24   chr2  110184849      111310281     NR_027244        LINC01106
25   chr2  110184849      111310281     NR_027467            LIMS3
27   chr2  110184849      111310281     NR_036225          MIR4267
28   chr2  110184849      111310281     NR_037626     LOC100507334
29   chr2  110184849      111310281     NR_039941        MIR4436B1
31   chr2  110184849      111310281     NR_046110        LINC01123
33   chr3  197165322      197409740  NM_001145642            RUBCN
35   chr3  197165322      197409740     NM_203314             BDH1
37   chr3  197165322      197409740     NR_003266        LOC220729
38   chr3  197165322      197409740     NR_030627           MIR922,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   31505152       31633239  NM_152325      TEX26
1  chr13   31505152       31633239  NR_038287  TEX26-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   30309943       30457197  NM_001282472   GOLGA8J
1  chr15   30309943       30457197     NR_026859    ULK4P3
2  chr15   30309943       30457197     NR_033933   GOLGA8T,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   20632743       20963383  NM_001145004   GOLGA6L6
1   chr15   20632743       20963383     NR_027411   GOLGA8CP
2   chr15   20632743       20963383     NR_027992     NBEAP1
3   chr15   20632743       20963383     NR_036432    HERC2P3
4   chr16   68774809       69071314  NM_001317184       CDH1
5   chr16   68774809       69071314     NM_024562     TANGO6
6   chr16   68774809       69071314     NR_106988  MIR7641-2
7   chr18   35117411       35372380     NM_020180      CELF4
8   chr18   35117411       35372380     NR_036202    MIR4318
9    chr2   35437578       35777014     NR_039629   MIR548AD
10   chr4   69242395       69382490     NM_014058  TMPRSS11E,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  185904459      186014087     NM_031935      HMCN1
1  chr21   23122865       23285236     NR_109958  LINC01425
2   chr5   59841901       59960527  NM_001145208    DEPDC1B
3   chr5   59841901       59960527     NR_024617      PART1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2  234347233      234547049     NM_003648          DGKD
1    chr2  234347233      234547049     NM_018218         USP40
2    chr2  234347233      234547049     NM_019075       UGT1A10
3    chr2  234347233      234547049     NM_019076        UGT1A8
5   chr22   20087651       20599872  NM_001190326         DGCR8
6   chr22   20087651       20599872  NM_001242313      TMEM191B
7   chr22   20087651       20599872  NM_001243537       CCDC188
8   chr22   20087651       20599872  NM_001278639        RANBP1
11  chr22   20087651       20599872     NM_013373        ZDHHC8
12  chr22   20087651       20599872     NM_015672        RIMBP3
13  chr22   20087651       20599872     NM_022727        TRMT2A
14  chr22   20087651       20599872     NM_023004         RTN4R
15  chr22   20087651       20599872     NM_033257        DGCR6L
16  chr22   20087651       20599872     NR_003563       PI4KAP1
17  chr22   20087651       20599872     NR_026919     LINC00896
18  chr22   20087651       20599872     NR_031618       MIR1286
19  chr22   20087651       20599872     NR_038460     LOC284865
20  chr22   20087651       20599872     NR_106874       MIR6816
21  chr22   20087651       20599872     NR_136560       FAM230A
22  chr22   20087651       20599872     NR_136572  LOC101927859
23   chr4   69311686       69781363     NM_001075       UGT2B10
24   chr4   69311686       69781363     NM_001076       UGT2B15
25   chr4   69311686       69781363     NM_001077       UGT2B17
26   chr4   69311686       69781363     NM_014058     TMPRSS11E
27   chr9   28687298       28802893  NM_001258282        LINGO2,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr13   22333602       22483907  NR_047040    LINC00424
1   chr9    9883898       10013615  NM_002839        PTPRD
2   chr9   11847098       12772323  NM_000550        TYRP1
3   chr9   11847098       12772323  NR_125775  LURAP1L-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr18     614766        1018984  NM_001012716    TYMSOS
1   chr18     614766        1018984     NM_001071      TYMS
2   chr18     614766        1018984  NM_001099733   ADCYAP1
4   chr18     614766        1018984  NM_001126123    ENOSF1
5   chr18     614766        1018984  NM_001289036     CLUL1
9   chr18     614766        1018984     NM_005433      YES1
12  chr21   22373943       22509252     NM_004540     NCAM2
13   chr9   20820659       21065046  NM_001010915     HACD4
15   chr9   20820659       21065046     NM_017794     FOCAD,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   14734005       14856791  NM_001277323    NPIPA3
2  chr16   14734005       14856791  NM_001277324    NPIPA2
4  chr16   14734005       14856791     NM_016561      BFAR
5  chr16   14734005       14856791     NR_133651   PLA2G10
6   chr8    3962917        4113204     NM_033225     CSMD1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr4     471066         751826     NM_000283      PDE6B
2   chr4     471066         751826  NM_001289053       PIGG
3   chr4     471066         751826  NM_001294341      MFSD7
4   chr4     471066         751826  NM_001317836      PCGF3
5   chr4     471066         751826     NM_002477       MYL5
6   chr4     471066         751826     NM_007100      ATP5I
7   chr4     471066         751826     NM_133474     ZNF721
10  chr7  110961650      111196335  NM_001244606     IMMP2L
12  chr9   43331602       43818011  NM_001145196  SPATA31A6
13  chr9   43331602       43818011  NM_001201380   CNTNAP3B
14  chr9   43331602       43818011     NR_111893  CNTNAP3P2
15  chr9   43331602       43818011     NR_126166    FAM74A7, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72539001       72650142     NR_026837     TRHDE-AS1
1   chr16   21488515       21735472  NM_001077180        METTL9
2   chr16   21488515       21735472  NM_001161683          OTOA
4   chr16   21488515       21735472     NM_005849         IGSF6
7   chr16   21488515       21735472     NR_002594      SLC7A5P2
8   chr16   21488515       21735472     NR_027155        SMG1P3
9   chr16   21488515       21735472     NR_049833     MIR3680-2
10  chr16   21488515       21735472     NR_110930  LOC101927814
11  chr17   21682626       22218450  NM_001190452      MTRNR2L1
12  chr17   21682626       22218450     NR_027084      FLJ36000
13  chr17   21682626       22218450     NR_028336       FAM27E5
14   chr8    7065571        7619467  NM_001040705      DEFB107B
15   chr8    7065571        7619467  NM_001081551      DEFB103A
16   chr8    7065571        7619467  NM_001164457       ZNF705G
17   chr8    7065571        7619467  NM_001205266        DEFB4B
18   chr8    7065571        7619467  NM_001256873       USP17L1
19   chr8    7065571        7619467  NM_001256874       USP17L4
20   chr8    7065571        7619467  NM_001282478       PRR23D2
21   chr8    7065571        7619467  NM_001282479       PRR23D1
22   chr8    7065571        7619467     NM_058200       SPAG11B
26   chr8    7065571        7619467     NM_080389      DEFB104A
27   chr8    7065571        7619467     NM_152250      DEFB105A
28   chr8    7065571        7619467     NM_152251      DEFB106A
29   chr8    7065571        7619467     NR_003668    DEFB109P1B
30   chr8    7065571        7619467     NR_027000     LINC00965
33   chr8    7065571        7619467     NR_027423        FAM66B
34   chr8    7065571        7619467     NR_046343      FAM90A7P, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   48924321       49096004  NM_001286238    SPATA6
1   chr1   48924321       49096004  NM_001323575     AGBL4
2  chr16    6284657        6569200  NM_001308117    RBFOX1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   83510703       83745841  NM_001142699       DLG2
4   chr12   16154808       16377464  NM_001170798    SLC15A5
5   chr12   16154808       16377464  NM_001300779       DERA
6   chr15   52709520       52815362  NM_001142495      MYO5A
7   chr16   85282227       85385825     NR_038859  LINC00311
8   chr16   85282227       85385825     NR_049816    MIR5093
9    chr3  159981503      160179857  NM_001190241      IFT80
11   chr3  159981503      160179857  NM_001288753       SMC4
13   chr3  159981503      160179857     NM_173084     TRIM59
14   chr3  159981503      160179857     NR_029525    MIR16-2
15   chr3  159981503      160179857     NR_029663     MIR15B,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67993315       68428441  NM_001127384    CTNNA3
2   chr7  110531110      111176412  NM_001099658     LRRN3
3   chr7  110531110      111176412  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12   17815407       17927527     NR_039770       MIR3974
1  chr12   27152394       27319300  NM_001080406      C12orf71
2  chr12   27152394       27319300  NM_001271811         MED21
3  chr12   27152394       27319300     NM_016551        TM7SF3
4  chr18    8116040        8440590     NM_002845         PTPRM
5  chr18    8116040        8440590     NR_024419  LOC100192426,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   63408920       64082764  NR_126409  LINC00376
1   chr4   69262362       69543122  NM_001076    UGT2B15
2   chr4   69262362       69543122  NM_001077    UGT2B17
3   chr4   69262362       69543122  NM_014058  TMPRSS11E,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48443410       48571076  NM_001005512    OR4A47
1   chr8   15301562       15426285     NM_006765     TUSC3,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2  110165964      110422405  NM_001099289        SH3RF3
1  chr2  110165964      110422405  NM_001321504        SEPT10
3  chr2  110165964      110422405     NM_023016        SOWAHC
4  chr7   64066257       64215332  NM_001282360        ZNF107
5  chr7   64066257       64215332     NR_077227  LOC100128885
7  chr7   64066257       64215332     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48359123       48656783  NM_001005512    OR4A47
1  chr11   48359123       48656783  NM_001005513    OR4C45
2   chr7  110681160      110789053  NM_001099658     LRRN3
3   chr7  110681160      110789053  NM_001244606    IMMP2L
5   chr8   87950179       88325538     NM_173538     CNBD1
6   chr9   38965646       39105424     NM_033655   CNTNAP3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  110616225      110930234  NM_001099658     LRRN3
1  chr7  110616225      110930234  NM_001244606    IMMP2L
3  chr7  110730734      110974375  NM_001099658     LRRN3
4  chr7  110730734      110974375  NM_001244606    IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr5  109848464      110158312  NM_001039763   TMEM232
1  chr5  109848464      110158312  NM_001303250  SLC25A46
3  chr5  109848464      110158312     NR_031644  MIR548F3,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr3  197137266      197424983  NM_001145642      RUBCN
2  chr3  197137266      197424983     NM_203314       BDH1
4  chr3  197137266      197424983     NR_003266  LOC220729
5  chr3  197137266      197424983     NR_030627     MIR922
6  chr4  169255145      169380241  NM_001012967     DDX60L,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr12   72711356       73048252  NM_013381         TRHDE
1   chr2     856624         996689  NM_018968         SNTG2
2   chr2     856624         996689  NR_033880     LINC01115
3   chr2     856624         996689  NR_110179  LOC101060385
4   chr2     856624         996689  NR_136151  LOC101060391
5   chr2  193494318      194469684  NR_002769        PCGEM1,      chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr15   20927122       21087433  NM_001277303       POTEB2
1    chr15   20927122       21087433     NM_207355       POTEB3
2    chr15   20927122       21087433     NR_027992       NBEAP1
3    chr15   20927122       21087433     NR_036062    MIR3118-2
5    chr16   22200529       22481443  NM_001258033       POLR3E
6    chr16   22200529       22481443     NM_001802         CDR2
7    chr16   22200529       22481443     NM_013302        EEF2K
8    chr16   22200529       22481443     NR_027154       SMG1P1
9    chr16   22200529       22481443     NR_027460       RRN3P3
10   chr16   22200529       22481443     NR_136333      MFSD13B
11   chr19    1098390        1946334     NM_000156         GAMT
12   chr19    1098390        1946334     NM_000455        STK11
13   chr19    1098390        1946334  NM_001001975        ATP5D
14   chr19    1098390        1946334     NM_001018        RPS15
15   chr19    1098390        1946334  NM_001039848         GPX4
16   chr19    1098390        1946334  NM_001080488      ONECUT3
17   chr19    1098390        1946334  NM_001100122        SBNO2
18   chr19    1098390        1946334  NM_001130111      ABHD17A
19   chr19    1098390        1946334  NM_001136139         TCF3
20   chr19    1098390        1946334  NM_001174118        MEX3D
21   chr19    1098390        1946334  NM_001178002       ATP8B3
22   chr19    1098390        1946334  NM_001243079         PLK5
23   chr19    1098390        1946334     NM_001280        CIRBP
24   chr19    1098390        1946334  NM_001281454         MBD3
28   chr19    1098390        1946334     NM_001319      CSNK1G2
29   chr19    1098390        1946334  NM_001329539       SCAMP4
30   chr19    1098390        1946334     NM_001405        EFNA2
33   chr19    1098390        1946334     NM_005883         APC2
34   chr19    1098390        1946334     NM_006830       UQCR11
36   chr19    1098390        1946334     NM_017573        PCSK4
..     ...        ...            ...           ...          ...
62   chr19   23458770       25337686     NM_138330       ZNF675
63   chr19   23458770       25337686     NR_003603     HAVCR1P1
64   chr19   23458770       25337686     NR_003662      RPSAP58
65   chr19   23458770       25337686     NR_126448    LINC01224
66   chr20   14653178       15082063     NM_080676      MACROD2
67   chr20   14653178       15082063     NR_037841  MACROD2-AS1
69   chr22   19892125       20254278     NM_000754         COMT
72   chr22   19892125       20254278  NM_001190326        DGCR8
73   chr22   19892125       20254278  NM_001243537      CCDC188
74   chr22   19892125       20254278  NM_001278639       RANBP1
77   chr22   19892125       20254278  NM_001282512       TXNRD2
78   chr22   19892125       20254278  NM_001283116       TANGO2
81   chr22   19892125       20254278     NM_001670        ARVCF
84   chr22   19892125       20254278     NM_013373       ZDHHC8
85   chr22   19892125       20254278     NM_022727       TRMT2A
86   chr22   19892125       20254278     NM_023004        RTN4R
87   chr22   19892125       20254278     NR_026919    LINC00896
88   chr22   19892125       20254278     NR_029706       MIR185
89   chr22   19892125       20254278     NR_031618      MIR1286
90   chr22   19892125       20254278     NR_031706      MIR1306
91   chr22   19892125       20254278     NR_037412      MIR3618
92   chr22   19892125       20254278     NR_038460    LOC284865
93   chr22   19892125       20254278     NR_039918      MIR4761
94   chr22   19892125       20254278     NR_106874      MIR6816
95    chr7   75897189       76092099  NM_001102594         DTX2
96    chr7   75897189       76092099  NM_001110199        SRRM3
97    chr7   75897189       76092099  NM_001110354          ZP3
98    chr7   75897189       76092099     NM_001540        HSPB1
100   chr7   75897189       76092099     NM_012479        YWHAG
101   chr7   75897189       76092099     NM_080744        SSC4D

[79 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   63493241       63665902  NM_001039469     MARK2
1   chr11   63493241       63665902  NM_001144936  C11orf95
2   chr11   63493241       63665902  NM_001265591      RTN3
4   chr11   63493241       63665902     NM_138471  C11orf84
5   chr11   67184235       67320637  NM_001018070    CORO1B
6   chr11   67184235       67320637  NM_001078650   TMEM134
7   chr11   67184235       67320637  NM_001166222    CARNS1
8   chr11   67184235       67320637  NM_001300895     CABP4
10  chr11   67184235       67320637  NM_001302959       AIP
11  chr11   67184235       67320637  NM_001318496     CABP2
12  chr11   67184235       67320637     NM_003952   RPS6KB2
14  chr11   67184235       67320637     NM_004910   PITPNM1
15  chr11   67184235       67320637     NM_005608   PTPRCAP
16  chr11   67184235       67320637     NM_005851   CDK2AP2
19  chr11   67184235       67320637     NM_206997    GPR152
21  chr11   67184235       67320637     NR_106810   MIR6752
22  chr19   47828574       47982073  NM_001009813     MEIS3
23  chr19   47828574       47982073  NM_001271749     C5AR2
25  chr19   47828574       47982073  NM_001291296      KPTN
28  chr19   47828574       47982073     NM_014681     DHX34
29  chr19   47828574       47982073     NM_015063    SLC8A2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   78175374       78481268     NR_024342        SNAR-H
1  chr2   78175374       78481268     NR_110287  LOC101927948
2  chr2   78175374       78481268     NR_110288  LOC101927967
3  chr5   15968015       16248884  NM_001102562       MARCH11
4  chr5  146426146      146901561  NM_001112724        STK32A
5  chr5  146426146      146901561  NM_001197294        DPYSL3
6  chr5  146426146      146901561  NM_001271899       PPP2R2B,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  244976358      245089241  NM_001312871     COX20
2   chr1  244976358      245089241     NM_004501    HNRNPU
4   chr1  244976358      245089241     NR_132782  SNORA100
5  chr11   20770793       20881899  NM_001288713     NELL1
6   chr6  161958954      162104147     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name        gene_name
0   chr15   20949916       21389028  NM_001277303           POTEB2
1   chr15   20949916       21389028     NM_207355           POTEB3
2   chr15   20949916       21389028     NR_027992           NBEAP1
3   chr15   20949916       21389028     NR_028506            NF1P2
4   chr15   20949916       21389028     NR_036062        MIR3118-2
5   chr15   20949916       21389028     NR_040094        LINC01193
6   chr15   20949916       21389028     NR_049895        MIR5701-2
8   chr19   33707142       33884166     NM_000285             PEPD
9   chr19   33707142       33884166  NM_001252296            CEBPG
10  chr19   33707142       33884166  NM_001285829            CEBPA
12  chr19   33707142       33884166     NM_019849          SLC7A10
13  chr19   33707142       33884166     NR_026887        CEBPA-AS1
14   chr2  110053501      110790258  NM_001037866            RGPD6
15   chr2  110053501      110790258  NM_001099289           SH3RF3
17   chr2  110053501      110790258  NM_001205288            LIMS4
18   chr2  110053501      110790258  NM_001321504           SEPT10
20   chr2  110053501      110790258     NM_005054            RGPD5
21   chr2  110053501      110790258     NM_023016           SOWAHC
22   chr2  110053501      110790258     NR_027142        LOC440895
23   chr2  110053501      110790258     NR_027145  LIMS3-LOC440895
24   chr2  110053501      110790258     NR_027467            LIMS3
25   chr2  110053501      110790258     NR_046110        LINC01123
26   chr4   30735550       30876663  NM_001173523            PCDH7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245018726      245189199  NM_001143943        EFCAB2
2    chr1  245018726      245189199     NM_004501        HNRNPU
4    chr1  245018726      245189199     NR_111907  LOC101928068
5   chr10   81523008       81665739     NR_029407     LOC642361
6   chr10   81523008       81665739     NR_033857       BMS1P21
7   chr10   81523008       81665739     NR_120611    NUTM2B-AS1
10  chr10   88963532       89064576  NM_001099338        NUTM2A
11  chr10   88963532       89064576     NR_024397    NUTM2A-AS1
12  chr15   51437231       52216279  NM_001142885         TMOD2
13  chr15   51437231       52216279  NM_001143917        LYSMD2
14  chr15   51437231       52216279  NM_001174117         DMXL2
15  chr15   51437231       52216279  NM_001330297          GLDN
16  chr15   51437231       52216279     NM_013243          SCG3
17  chr15   51437231       52216279     NM_014547         TMOD3
18  chr15   51437231       52216279     NM_031226       CYP19A1
21  chr15   51437231       52216279     NR_039863       MIR4713
22  chr15   51437231       52216279     NR_107012     MIR7973-1
23  chr15   51437231       52216279     NR_107013     MIR7973-2
24  chr15   51437231       52216279     NR_109775  LOC100422556
25  chr16   76278183       76875590  NM_001322181       CNTNAP4
27  chr16   76278183       76875590     NR_110934  LOC101928203,     chrom  cnv_start  cnv_terminate    tx_name     gene_name
0   chr15   28565049       28905807  NM_004667         HERC2
1   chr15   28565049       28905807  NR_033351       GOLGA8F
3   chr15   28565049       28905807  NR_033353       GOLGA8G
5   chr15   28565049       28905807  NR_036443       HERC2P9
6   chr15   28565049       28905807  NR_039734     MIR4509-3
8   chr18   40240718       40359161  NM_002930          RIT2
9   chr18   40240718       40359161  NR_046174     LINC00907
10   chr2  186588689      186729642  NM_173651         FSIP2
11   chr2  186588689      186729642  NR_110214  LOC101927196
14   chr2  186588689      186729642  NR_144453     FSIP2-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   68611261       68727954  NM_001317195       CDH3
1  chr16   72544260       72833169  NM_001164766      ZFHX3
3  chr16   72544260       72833169     NR_126330  LINC01572,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr15   77866303       78066821  NM_001301186      LINGO1
10  chr15   77866303       78066821     NR_045123  LINGO1-AS1
11  chr15   77866303       78066821     NR_120361  LINGO1-AS2
12   chr4   69293643       69402919     NM_001077     UGT2B17
13   chr4   69293643       69402919     NM_014058   TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr20   14743616       16284407  NM_001033087      MACROD2
1   chr20   14743616       16284407     NM_024704       KIF16B
3   chr20   14743616       16284407     NR_037841  MACROD2-AS1
5   chr20   14743616       16284407     NR_130924    LOC613266
7    chr7  110424984      110606094  NM_001244606       IMMP2L
9    chr7  110633299      110783654  NM_001099658        LRRN3
10   chr7  110633299      110783654  NM_001244606       IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr1  142507959      142740980     NR_046228  ANKRD20A12P
1  chr3   85370481       85544492  NM_001167675        CADM2
2  chr3   85370481       85544492     NR_049870      MIR5688
3  chr4  121655097      121811486     NM_018699        PRDM5
4  chr7   16455373       16671506  NM_001101417         ISPD
5  chr7   16455373       16671506  NM_001195280       LRRC72
6  chr7   16455373       16671506     NM_015464      SOSTDC1
7  chr7   16455373       16671506     NM_020319       ANKMY2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   48939864       49224286  NM_001302082         BEND5
1   chr1   48939864       49224286  NM_001323575         AGBL4
2   chr7   64187716       65112941  NM_001007253        ERV3-1
3   chr7   64187716       65112941  NM_001160183        ZNF138
4   chr7   64187716       65112941  NM_001287532         ZNF92
5   chr7   64187716       65112941     NM_015852        ZNF117
6   chr7   64187716       65112941     NM_021148        ZNF273
7   chr7   64187716       65112941     NR_027392       INTS4P2
8   chr7   64187716       65112941     NR_033416        CCT6P3
9   chr7   64187716       65112941     NR_038378     LOC441242
11  chr9   44307711       44730553     NR_121564  LOC101927827
12  chr9   44307711       44730553     NR_126050  LOC103908605,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr14   79523462       79736573  NM_004796         NRXN3
2  chr14   79523462       79736573  NR_135159  LOC105370586
3   chr4  133423612      133526798  NR_126401     LINC01256,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143117846      143312523     NR_110761  LOC102723769
1   chr14   21804289       21918541  NM_001170629          CHD8
2   chr14   21804289       21918541     NM_007192       SUPT16H
3   chr14   21804289       21918541     NM_020366       RPGRIP1
5   chr14   21804289       21918541     NR_002916        SNORD8
6   chr14   21804289       21918541     NR_003029        SNORD9
7   chr15   20698811       20976085  NM_001145004      GOLGA6L6
8   chr15   20698811       20976085     NR_027411      GOLGA8CP
9   chr15   20698811       20976085     NR_027992        NBEAP1
10  chr15   20698811       20976085     NR_036432       HERC2P3
11   chr7    8650730        8757487     NM_152745         NXPH1
12   chr9   28445964       28914102  NM_001258282        LINGO2
14   chr9   28445964       28914102     NR_030597        MIR876
15   chr9   28445964       28914102     NR_030618        MIR873
16   chr9   28607493       28709826  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145312696      145681955  NM_001012758        NUDT17
1    chr1  145312696      145681955  NM_001039888      ANKRD34A
2    chr1  145312696      145681955  NM_001184795        PEX11B
3    chr1  145312696      145681955  NM_001277444         NBPF9
4    chr1  145312696      145681955  NM_001278267        NBPF20
5    chr1  145312696      145681955  NM_001280799       ANKRD35
6    chr1  145312696      145681955  NM_001302371        NBPF10
7    chr1  145312696      145681955  NM_001303040        ITGA10
8    chr1  145312696      145681955  NM_001303456        POLR3C
9    chr1  145312696      145681955  NM_001313972         TXNIP
11   chr1  145312696      145681955     NM_005105         RBM8A
12   chr1  145312696      145681955     NM_006099         PIAS3
15   chr1  145312696      145681955     NM_014455        RNF115
16   chr1  145312696      145681955     NM_032305       POLR3GL
17   chr1  145312696      145681955     NM_145277          HFE2
18   chr1  145312696      145681955     NM_153713         LIX1L
19   chr1  145312696      145681955     NR_002328        GNRHR2
23   chr1  145312696      145681955     NR_104217       NBPF25P
24   chr1  145312696      145681955     NR_106794       MIR6736
25   chr1  145312696      145681955     NR_125967  LOC101928979
26  chr18   63279397       63600250  NM_001317214          CDH7
29  chr20   14797497       15046494     NM_080676       MACROD2
30  chr20   14797497       15046494     NR_037841   MACROD2-AS1
32   chr6  120255634      120601303     NR_036098       MIR3144,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  112367585      112473504     NM_172198         KCND3
1    chr1  112367585      112473504     NR_046619     KCND3-AS1
2    chr1  112367585      112473504     NR_046783     KCND3-IT1
3   chr11   48310908       48428988  NM_001004702         OR4C3
4   chr11   48310908       48428988  NM_001004725         OR4S1
5   chr11   48310908       48428988  NM_001005513        OR4C45
6   chr17    3341426        3471433     NM_000049          ASPA
8   chr17    3341426        3471433  NM_001170696       SPATA22
13  chr17    3341426        3471433     NM_018727         TRPV1
18  chr17    3341426        3471433     NM_145068         TRPV3
19   chr2   50808906       51769489  NM_001330079         NRXN1
22   chr2   50808906       51769489     NR_130470       MIR8485
23   chr2   50808906       51769489     NR_135237     LOC730100
24  chr21   22952873       23446081     NR_038872     LINC00317
25  chr21   22952873       23446081     NR_109958     LINC01425
26  chr21   22952873       23446081     NR_109959  LOC101927843,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20224505       23751595  NM_001001413      GOLGA6L1
1   chr15   20224505       23751595  NM_001004719         OR4M2
2   chr15   20224505       23751595  NM_001005241         OR4N4
3   chr15   20224505       23751595  NM_001008860         NIPA2
4   chr15   20224505       23751595  NM_001033028        CYFIP1
5   chr15   20224505       23751595  NM_001102610       TUBGCP5
6   chr15   20224505       23751595  NM_001142275         NIPA1
7   chr15   20224505       23751595  NM_001145004      GOLGA6L6
8   chr15   20224505       23751595  NM_001271664     GOLGA6L22
10  chr15   20224505       23751595  NM_001277303        POTEB2
11  chr15   20224505       23751595  NM_001277304         POTEB
12  chr15   20224505       23751595  NM_001304388      GOLGA6L2
18  chr15   20224505       23751595     NM_207355        POTEB3
20  chr15   20224505       23751595     NR_002824       HERC2P2
21  chr15   20224505       23751595     NR_003521       WHAMMP3
22  chr15   20224505       23751595     NR_015416     LOC727924
23  chr15   20224505       23751595     NR_024074      GOLGA8IP
24  chr15   20224505       23751595     NR_024387       CXADRP2
25  chr15   20224505       23751595     NR_027053     LOC646214
26  chr15   20224505       23751595     NR_027407      GOLGA8DP
27  chr15   20224505       23751595     NR_027411      GOLGA8CP
28  chr15   20224505       23751595     NR_027992        NBEAP1
29  chr15   20224505       23751595     NR_028067        OR4N3P
30  chr15   20224505       23751595     NR_028506         NF1P2
32  chr15   20224505       23751595     NR_031672      MIR1268A
33  chr15   20224505       23751595     NR_033350      GOLGA8EP
34  chr15   20224505       23751595     NR_033735        REREP3
35  chr15   20224505       23751595     NR_036062     MIR3118-2
36  chr15   20224505       23751595     NR_036063     MIR3118-3
37  chr15   20224505       23751595     NR_036432       HERC2P3
38  chr15   20224505       23751595     NR_036470       HERC2P7
39  chr15   20224505       23751595     NR_038836       CHEK2P2
40  chr15   20224505       23751595     NR_038843       GOLGA8S
41  chr15   20224505       23751595     NR_039734     MIR4509-3
42  chr15   20224505       23751595     NR_040057     LOC283683
43  chr15   20224505       23751595     NR_040094     LINC01193
44  chr15   20224505       23751595     NR_049895     MIR5701-2
45  chr15   20224505       23751595     NR_110480  LOC101927079
49  chr15   20224505       23751595     NR_128721     MIR5701-3
50  chr15   20224505       23751595     NR_135666   IGHV1OR15-3
51  chr15   20224505       23751595     NR_135694   IGHV1OR15-1
52  chr18   24682672       24789378  NM_001256316         CHST9
53   chr9   41436582       42314037  NM_001113541     SPATA31A5
54   chr9   41436582       42314037     NM_015667     SPATA31A7
55   chr9   41436582       42314037     NR_003528       ZNF658B
56   chr9   41436582       42314037     NR_003670        FGF7P3
57   chr9   41436582       42314037     NR_015363         GLIDR
58   chr9   41436582       42314037     NR_026803       FAM74A1
61   chr9   41436582       42314037     NR_126048  LOC102724238
62   chr9   41436582       42314037     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   19650266       19915815  NM_001142308        MALRD1
1  chr13   19674800       19805233     NM_006001        TUBA3C
2  chr13   19674800       19805233     NR_126054  LOC101928697
3   chr4   91140741       91734185  NM_001145065        CCSER1
5   chr7   71452724       71584582  NM_001017440         CALN1
7   chr7   80024696       80177213  NM_001102386         GNAT3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  185943560      186083655     NM_031935     HMCN1
1  chr1  237474334      237717612     NM_001035      RYR2
2  chr1  237474334      237717612     NR_039626   MIR4428
3  chr3  189587430      189713395  NM_001114979      TP63
5  chr3  189587430      189713395  NM_001134418      P3H2,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr11    4163155        4294081  NR_047550  LOC100506082
1   chr5   26926517       27051592  NM_016279          CDH9,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr13   46948536       47074632  NM_001286761        RUBCNL
2  chr13   46948536       47074632     NR_120426     LINC01198
3   chr2  215491594      215682139     NM_000465         BARD1
4   chr2  215491594      215682139     NR_110292  LOC101928103,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  176987185      177512914  NM_001286164         ASTN1
2    chr1  176987185      177512914     NM_021165        BRINP2
4    chr1  176987185      177512914     NR_030163        MIR488
5    chr1  176987185      177512914     NR_126001  LOC102724661
6   chr11   67226263       67443995     NM_000695       ALDH3B2
7   chr11   67226263       67443995     NM_000852         GSTP1
9   chr11   67226263       67443995  NM_001078650       TMEM134
10  chr11   67226263       67443995  NM_001166102        NDUFV1
11  chr11   67226263       67443995  NM_001243750         NUDT8
12  chr11   67226263       67443995  NM_001300895         CABP4
14  chr11   67226263       67443995  NM_001302959           AIP
15  chr11   67226263       67443995  NM_001318496         CABP2
17  chr11   67226263       67443995     NM_004910       PITPNM1
18  chr11   67226263       67443995     NM_005851       CDK2AP2
19  chr11   67226263       67443995     NM_005995         TBX10
20  chr11   67226263       67443995     NM_080658          ACY3
23  chr11   67226263       67443995     NR_033791        DOC2GP
25  chr11   67226263       67443995     NR_106810       MIR6752
26  chr11   67226263       67443995     NR_130935      C11orf72
27  chr16   16471020       16584195  NM_001282511        NPIPA8
28   chr4  129657494      129763398  NM_001287437         JADE1
34   chr7   82847993       83221696  NM_001178129        SEMA3E,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   20781796       20925205  NM_001288713     NELL1
1  chr11   21283812       21399907  NM_001288713     NELL1
2  chr15   24339197       24493442     NR_026647     PWRN2
3   chr2  215407934      215593858     NM_000465     BARD1
4   chr2  215407934      215593858  NM_001080500     VWC2L
5   chr4  118867441      119178754     NM_004784     NDST3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  241513727      241697388     NM_000143        FH
1    chr1  241513727      241697388  NM_001282773      RGS7
2    chr1  241513727      241697388     NM_003679       KMO
3   chr10   67993895       68157345  NM_001127384    CTNNA3
5   chr16    6513429        6615656  NM_001308117    RBFOX1
7    chr7   64150814       64735876  NM_001007253    ERV3-1
8    chr7   64150814       64735876  NM_001160183    ZNF138
9    chr7   64150814       64735876  NM_001282360    ZNF107
10   chr7   64150814       64735876     NM_015852    ZNF117
11   chr7   64150814       64735876     NM_021148    ZNF273
12   chr7   64150814       64735876     NR_033416    CCT6P3
14   chr7  110501256      110776568  NM_001099658     LRRN3
15   chr7  110501256      110776568  NM_001244606    IMMP2L
17   chr9  116740157      116840179  NM_001318041    ZNF618
18   chr9  116740157      116840179     NM_001633      AMBP,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0    chr1  100047873      100376416     NM_000028             AGL
3    chr1  100047873      100376416  NM_001013660           FRRS1
4    chr1  100047873      100376416     NM_017734           PALMD
5    chr1  100047873      100376416     NR_037516       MIR548AA1
6   chr15   43789591       45137904  NM_001018108           SERF2
7   chr15   43789591       45137904  NM_001145112           PATL2
8   chr15   43789591       45137904  NM_001167941           WDR76
9   chr15   43789591       45137904  NM_001190214         PPIP5K1
13  chr15   43789591       45137904  NM_001199885            HYPK
14  chr15   43789591       45137904  NM_001258031         SERINC4
15  chr15   43789591       45137904  NM_001282309        CATSPER2
16  chr15   43789591       45137904  NM_001286490           FRMD5
18  chr15   43789591       45137904  NM_001321927          CKMT1A
21  chr15   43789591       45137904     NM_002373           MAP1A
22  chr15   43789591       45137904     NM_003758           EIF3J
23  chr15   43789591       45137904     NM_004048             B2M
24  chr15   43789591       45137904     NM_005313           PDIA3
25  chr15   43789591       45137904     NM_005657         TP53BP1
26  chr15   43789591       45137904     NM_005926           MFAP1
28  chr15   43789591       45137904     NM_016396         CTDSPL2
29  chr15   43789591       45137904     NM_020990          CKMT1B
30  chr15   43789591       45137904     NM_025137           SPG11
31  chr15   43789591       45137904     NM_025165            ELL3
32  chr15   43789591       45137904     NM_153700            STRC
34  chr15   43789591       45137904     NM_177974           CASC4
35  chr15   43789591       45137904     NM_182985          TRIM69
36  chr15   43789591       45137904     NR_002318      CATSPER2P1
37  chr15   43789591       45137904     NR_003571          PIN4P1
38  chr15   43789591       45137904     NR_031695         MIR1282
39  chr15   43789591       45137904     NR_034170       EIF3J-AS1
41  chr15   43789591       45137904     NR_037673  SERF2-C15ORF63
43  chr15   43789591       45137904     NR_125376    LOC100419583,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4786919        5167725  NM_001001916        OR52J3
1   chr11    4786919        5167725  NM_001004748        OR51A2
2   chr11    4786919        5167725  NM_001004749        OR51A7
3   chr11    4786919        5167725  NM_001004752        OR51F1
4   chr11    4786919        5167725  NM_001004753        OR51F2
5   chr11    4786919        5167725  NM_001004755        OR51L1
6   chr11    4786919        5167725  NM_001004758        OR51S1
7   chr11    4786919        5167725  NM_001004759        OR51T1
8   chr11    4786919        5167725  NM_001005160        OR52A5
9   chr11    4786919        5167725  NM_001005164        OR52E2
10  chr11    4786919        5167725  NM_001005177        OR52R1
11  chr11    4786919        5167725  NM_001005237        OR51G1
12  chr11    4786919        5167725  NM_001005238        OR51G2
13  chr11    4786919        5167725  NM_001005329        OR51A4
14  chr11    4786919        5167725     NM_021801         MMP26
15  chr15   65414079       65545005     NM_003613          CILP
16  chr15   65414079       65545005     NM_005707         PDCD7
17  chr15   65414079       65545005     NM_006660          CLPX
18   chr2   77983498       78137743     NR_110288  LOC101927967,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   76802723       76953010     NR_039870       MIR4719
1  chr17   64563323       64685496     NM_002737         PRKCA
2   chr2     946325        1146843     NM_018968         SNTG2
3   chr2     946325        1146843     NR_136151  LOC101060391
4   chr2   75837410       76099008  NM_001201334         GCFC2
7   chr2   75837410       76099008     NM_014763        MRPL19,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   29461452       29629738  NM_001293069      CHN2
4  chr7   29461452       29629738  NM_001329997     PRR15
7  chr7  110643543      110822891  NM_001099658     LRRN3
8  chr7  110643543      110822891  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21545432       21653876  NM_001077180        METTL9
2   chr16   21545432       21653876     NM_005849         IGSF6
3   chr16   21545432       21653876     NR_110930  LOC101927814
4    chr4     136139        1217298     NM_000203          IDUA
5    chr4     136139        1217298     NM_000283         PDE6B
6    chr4     136139        1217298  NM_001004356        FGFRL1
8    chr4     136139        1217298  NM_001039127        ZNF718
9    chr4     136139        1217298  NM_001128325         SPON2
10   chr4     136139        1217298  NM_001131034        RNF212
11   chr4     136139        1217298  NM_001137608        ZNF732
15   chr4     136139        1217298  NM_001289053          PIGG
18   chr4     136139        1217298  NM_001294341         MFSD7
19   chr4     136139        1217298  NM_001297423       TMEM175
20   chr4     136139        1217298  NM_001317836         PCGF3
21   chr4     136139        1217298  NM_001318134           GAK
22   chr4     136139        1217298     NM_001328         CTBP1
23   chr4     136139        1217298     NM_001347          DGKQ
24   chr4     136139        1217298     NM_002477          MYL5
25   chr4     136139        1217298     NM_003441        ZNF141
26   chr4     136139        1217298     NM_006651         CPLX1
27   chr4     136139        1217298     NM_007100         ATP5I
30   chr4     136139        1217298     NM_022042       SLC26A1
31   chr4     136139        1217298     NM_133474        ZNF721
33   chr4     136139        1217298     NR_002451       ABCA11P
34   chr4     136139        1217298     NR_024569  LOC100130872
35   chr4     136139        1217298     NR_027481       ZNF876P
36   chr4     136139        1217298     NR_030297        MIR571
37   chr4     136139        1217298     NR_033768       TMED11P
38   chr4     136139        1217298     NR_036511  LOC100129917
39   chr4     136139        1217298     NR_104331      CTBP1-AS
43   chr4     136139        1217298     NR_134676  LOC105374344, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48285459       48436913  NM_001004702     OR4C3
1  chr11   48285459       48436913  NM_001004725     OR4S1
2  chr11   48285459       48436913  NM_001004726     OR4X1
3  chr11   48285459       48436913  NM_001005513    OR4C45,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr6   92064738       92406313  NR_039786   MIR4643
1  chr6   92064738       92406313  NR_104154     CASC6,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr17   21235075       21396645  NM_001194958    KCNJ18
1   chr17   21235075       21396645     NM_021012    KCNJ12
2    chr4   71378662       71672738  NM_001037442     RUFY3
4    chr4   71378662       71672738  NM_001286731      AMTN
8    chr4   71378662       71672738     NM_016519      AMBN
9    chr4   71378662       71672738     NM_020368      UTP3
10   chr4   71378662       71672738     NM_031889      ENAM
11   chr4   71378662       71672738     NM_144646    JCHAIN
12   chr4  128399213      128559822     NM_015693      INTU
13   chr5  167288562      167414175  NM_001080428     TENM2
15   chr9   41906064       42007730     NR_003670    FGF7P3
16   chr9   41906064       42007730     NR_015363     GLIDR
19   chr9   41849024       42006295     NR_003670    FGF7P3
20   chr9   41849024       42006295     NR_015363     GLIDR,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   84047210       84175297  NM_001142699       DLG2
2    chr3  172088051      172211997  NM_001135095     FNDC3B
3    chr3  172088051      172211997     NM_004122       GHSR
6    chr3  189538976      189703062  NM_001114979       TP63
8    chr3  189538976      189703062  NM_001134418       P3H2
13   chr3  189538976      189703062     NR_030642     MIR944
14   chr4   71337342       71654009  NM_001037442      RUFY3
16   chr4   71337342       71654009  NM_001145006       MUC7
18   chr4   71337342       71654009  NM_001286731       AMTN
22   chr4   71337342       71654009     NM_016519       AMBN
23   chr4   71337342       71654009     NM_020368       UTP3
24   chr4   71337342       71654009     NM_031889       ENAM
25   chr4   71337342       71654009     NM_144646     JCHAIN
27   chr4  181995824      182110634     NR_033918  LINC00290,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr21   44782892       45135007  NM_001320643  LOC102724428
1  chr21   44782892       45135007     NM_007031        HSF2BP
2  chr21   44782892       45135007     NM_015056         RRP1B
3  chr21   44782892       45135007     NM_173354          SIK1
4  chr21   44782892       45135007     NR_026863     LINC00313
5  chr21   44782892       45135007     NR_026960     LINC00319
6  chr21   44782892       45135007     NR_106718       MIR6070
7  chr21   44782892       45135007     NR_136540  LOC102724354
8   chr8   19740757       19854056     NM_000237           LPL,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   15198537       15385408  NM_001285449         PDXDC1
2   chr16   15198537       15385408     NR_037466      MIR3180-4
3   chr16   15198537       15385408     NR_106775      MIR6511B1
4   chr16   15198537       15385408     NR_106965      MIR6511B2
5   chr16   15198537       15385408     NR_123721  PKD1P6-NPIPP1
7   chr16   15198537       15385408     NR_125434   LOC100505915
8    chr6    5165990        5564057  NM_001164840          LYRM4
10   chr6    5165990        5564057  NM_001318872          FARS2
13   chr6    5165990        5564057     NR_125846   LOC101927972
14   chr6    5165990        5564057     NR_126015      LYRM4-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr3  148126028      148994885     NM_000096         CP
1   chr3  148126028      148994885  NM_001184721       GYG1
2   chr3  148126028      148994885  NM_001308258       HPS3
3   chr3  148126028      148994885  NM_001318934       HLTF
5   chr3  148126028      148994885     NM_001870       CPA3
6   chr3  148126028      148994885     NM_001871       CPB1
7   chr3  148126028      148994885     NM_009585      AGTR1
11  chr3  148126028      148994885     NR_046648   HLTF-AS1
12  chr3  192654262      193011744     NM_020386     HRASLS
13  chr3  192654262      193011744     NM_198505    ATP13A5
14  chr3  192654262      193011744     NR_026877    MGC2889
15  chr4   69253538       69398833     NM_014058  TMPRSS11E
16  chr7  110772361      110943015  NM_001244606     IMMP2L
18  chr9   64631641       65883473  NM_001113541  SPATA31A5
19  chr9   64631641       65883473     NM_015667  SPATA31A7
20  chr9   64631641       65883473     NR_026802    FAM74A4
21  chr9   64631641       65883473     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr10   81485217       81626330     NR_029407   LOC642361
1  chr10   81485217       81626330     NR_120611  NUTM2B-AS1
4   chr7  125109180      126107554  NM_001127323        GRM8, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27649878       27904847  NM_001034842        PTCHD3
1   chr10   27649878       27904847  NM_001256411         RAB18
2   chr15   28709516       28886380     NR_033351       GOLGA8F
3   chr15   28709516       28886380     NR_033353       GOLGA8G
4   chr15   28709516       28886380     NR_039734     MIR4509-3
5    chr2   97522137       97622893  NM_001122646       FAM178B
7    chr2   97522137       97622893     NM_016466       ANKRD39
9    chr2   97522137       97622893     NM_017789        SEMA4C
10   chr2   97522137       97622893     NR_110209  LOC101927053
11   chr7    6659155        6847591  NM_001099697      RSPH10B2
12   chr7    6659155        6847591  NM_001278559        ZNF316
13   chr7    6659155        6847591     NM_006956         ZNF12
14   chr7    6659155        6847591     NM_017560        ZNF853
15   chr7    6659155        6847591     NM_198097         CCZ1B
16   chr7    6659155        6847591     NR_002217        PMS2CL
17   chr7   67001672       67499512     NR_120514  LOC102723427,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   72354479       72632202     NM_173808         NEGR1
1   chr2  186268188      186689645     NM_173651         FSIP2
2   chr2  186268188      186689645     NR_110214  LOC101927196
5   chr2  186268188      186689645     NR_144453     FSIP2-AS1
7   chr4  169190581      169825303  NM_001012967        DDX60L
8   chr4  169190581      169825303  NM_001166108         PALLD
12  chr4  169190581      169825303     NM_017631         DDX60,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   84042132       84144474  NM_001142699          DLG2
2   chr5  142366836      142487403  NM_001135608      ARHGAP26
3   chr9   44329575       44551199     NR_121564  LOC101927827
4   chr9   44329575       44551199     NR_126050  LOC103908605,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1   87449259       87685624  NM_001134492        HS2ST1
1  chr1   87449259       87685624  NM_001290053  LOC101927844
3  chr1   87449259       87685624     NR_026985     LINC01140,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21527781       21677362  NM_001077180        METTL9
2   chr16   21527781       21677362     NM_005849         IGSF6
3   chr16   21527781       21677362     NR_002594      SLC7A5P2
4   chr16   21527781       21677362     NR_110930  LOC101927814
5   chr17   14112816       14226396  NM_001007530        CDRT15
6   chr17   14112816       14226396     NM_006041      HS3ST3B1
7   chr17   14112816       14226396     NR_026880      MGC12916
8    chr2  236614389      236718272  NM_001244888         AGAP1
10   chr3  162859904      162974714     NR_033945     LINC01192
11   chr9     516826         656866  NM_001256876         KANK1,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr12   17773120       17918249  NR_039770   MIR3974,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  145135760      145311406  NM_001277444      NBPF9
1    chr1  145135760      145311406  NM_001278267     NBPF20
2    chr1  145135760      145311406  NM_001302371     NBPF10
3    chr1  145135760      145311406     NM_203458   NOTCH2NL
4    chr1  145135760      145311406     NR_104217    NBPF25P
5   chr11     689104         808766  NM_001042463     TMEM80
6   chr11     689104         808766  NM_001191060   SLC25A22
9   chr11     689104         808766  NM_001293167      PANO1
10  chr11     689104         808766  NM_001318824      PDDC1
11  chr11     689104         808766     NM_006755     TALDO1
12  chr11     689104         808766     NM_016564      CEND1
13  chr11     689104         808766     NM_021008      DEAF1
14  chr11     689104         808766     NM_022772     EPS8L2
16  chr11     689104         808766     NM_145886      PIDD1
17  chr11     689104         808766     NR_126342  LOC171391
18   chr4   93937763       94052138     NM_001510      GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   59930744       60052539  NM_001320674         BNIP2
2   chr15   59930744       60052539  NM_001320929        GTF2A2
5   chr16   15457980       15603882  NM_001128423        MPV17L
6   chr16   15457980       15603882  NM_001142469      C16orf45
7   chr16   15457980       15603882  NM_001277325        NPIPA5
9   chr16   76557822       77021309  NM_001322181       CNTNAP4
11  chr16   76557822       77021309     NR_039870       MIR4719
12  chr16   76557822       77021309     NR_110934  LOC101928203
13  chr20   14626915       14784950     NM_080676       MACROD2
14   chr9   17193774       17616616  NM_001114395         CNTLN
15   chr9   17193774       17616616     NM_003026        SH3GL2,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0   chr1  143486631      143720005  NR_104014     LINC01138
1   chr1  143486631      143720005  NR_106967       MIR6077
2   chr1  143486631      143720005  NR_111930  LOC100132057
3  chr11   30231151       30335654  NM_000510          FSHB
4  chr13   63136059       63338713  NR_047029     LINC00448
5   chr8   19776933       19886596  NM_000237           LPL,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81496670       81597577     NR_029407     LOC642361
1   chr10   81496670       81597577     NR_120611    NUTM2B-AS1
4   chr14   21759087       21859361  NM_001170629          CHD8
5   chr14   21759087       21859361     NM_007192       SUPT16H
6   chr14   21759087       21859361     NM_020366       RPGRIP1
8    chr2   51285382       51395410     NR_135237     LOC730100
9    chr4   69283688       69426151     NM_001077       UGT2B17
10   chr4   69283688       69426151     NM_014058     TMPRSS11E
11   chr7   16721075       17006648  NM_001159767          BZW2
12   chr7   16721075       17006648     NM_006408          AGR2
13   chr7   16721075       17006648     NM_014399       TSPAN13
14   chr7   16721075       17006648     NM_176813          AGR3
15   chr7  146014598      147552959     NM_014141       CNTNAP2
16   chr7  146014598      147552959     NR_031645      MIR548F4
17   chr7  146014598      147552959     NR_110829  LOC101928700
18   chr7  146014598      147552959     NR_133929  LOC105375556,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  145258475      145407210  NM_001277444         NBPF9
1   chr1  145258475      145407210  NM_001278267        NBPF20
2   chr1  145258475      145407210  NM_001302371        NBPF10
3   chr1  145258475      145407210     NM_203458      NOTCH2NL
4   chr1  145258475      145407210     NR_104217       NBPF25P
5   chr1  145258475      145407210     NR_125967  LOC101928979
6  chr10   56534687       56706297  NM_001142770        PCDH15
9  chr10  117370758      117483294     NM_207303        ATRNL1, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr13   54695299       54883516     NR_108062    LINC00458
2   chr3    4108579        4954509  NM_001164675        SUMF1
3   chr3    4108579        4954509  NM_001168272        ITPR1
4   chr3    4108579        4954509  NM_001243723       SETMAR
6   chr3    4108579        4954509     NR_004428         EGOT
7   chr3    4108579        4954509     NR_037903  BHLHE40-AS1
8   chr3    4108579        4954509     NR_108075    ITPR1-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   68007383       68390408  NM_001127384    CTNNA3
2    chr7  110597285      110727593  NM_001244606    IMMP2L
4    chr9   28669554       28936545  NM_001258282    LINGO2
6    chr9   28669554       28936545     NR_030597    MIR876
7    chr9   28669554       28936545     NR_030618    MIR873
8    chr9  116532364      116644776  NM_001318041    ZNF618
9    chr9  116816253      116931470  NM_001318041    ZNF618
10   chr9  116816253      116931470     NM_001633      AMBP
11   chr9  116816253      116931470     NM_032888   COL27A1
12   chr9  116816253      116931470     NM_138424     KIF12,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   83036644       83142563  NM_001220488         CDH13
2   chr3    1950908        2289645  NM_001206955         CNTN4
4   chr3    1950908        2289645     NR_046555     CNTN4-AS2
5   chr5   99676195       99777464     NR_027503  LOC100133050
6   chr7  110579199      110706789  NM_001244606        IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1   49116467       49606173  NM_001302082      BEND5
1  chr1   49116467       49606173  NM_001323575      AGBL4
2  chr3   80383856       82054502     NM_000158       GBE1
3  chr3   80383856       82054502     NR_132411  LOC728290,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   12782022       13003646  NM_001009611       PRAMEF4
1   chr1   12782022       13003646  NM_001010889       PRAMEF6
2   chr1   12782022       13003646  NM_001010890       PRAMEF9
3   chr1   12782022       13003646  NM_001012276       PRAMEF8
4   chr1   12782022       13003646  NM_001013631      HNRNPCL1
5   chr1   12782022       13003646  NM_001080830      PRAMEF12
6   chr1   12782022       13003646  NM_001103170       AADACL3
7   chr1   12782022       13003646  NM_001146181      HNRNPCL3
8   chr1   12782022       13003646  NM_001146344      PRAMEF11
9   chr1   12782022       13003646  NM_001294139       PRAMEF1
10  chr1   12782022       13003646  NM_001302551      HNRNPCL4
12  chr1   12782022       13003646     NM_023014       PRAMEF2
13  chr1   12782022       13003646     NM_152290      C1orf158
14  chr5  106061626      106199309     NR_104671  LOC102467213,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   49153655       49348565  NM_001302082      BEND5
1    chr1   49153655       49348565  NM_001323575      AGBL4
2   chr10   68353195       68602190  NM_001127384     CTNNA3
4   chr11  132007525      132132540  NM_001048209        NTM
7   chr12    9400506        9518522     NR_024374  LOC642846
8   chr12    9400506        9518522     NR_137429  LINC00987
9   chr16    6447130        6711885  NM_001308117     RBFOX1
11   chr3    4161214        4773287  NM_001164675      SUMF1
12   chr3    4161214        4773287  NM_001168272      ITPR1
13   chr3    4161214        4773287  NM_001243723     SETMAR
15   chr3    4161214        4773287     NR_108075  ITPR1-AS1
16   chr5   63825152       64002176  NM_001029875     RGS7BP
17   chr5   63825152       64002176  NM_001164442    FAM159B
19   chr7    9138163       10475952     NR_002790       PER4
20   chr9     478503         926474  NM_001256876      KANK1
22   chr9     478503         926474     NM_021951      DMRT1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr2   52860905       53655093     NR_039630   MIR4431
1   chr22   19897017       20017467     NM_000754      COMT
4   chr22   19897017       20017467  NM_001282512    TXNRD2
5   chr22   19897017       20017467  NM_001283116    TANGO2
8   chr22   19897017       20017467     NM_001670     ARVCF
11  chr22   19897017       20017467     NR_039918   MIR4761,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67233744       67337218  NM_001078650       TMEM134
1   chr11   67233744       67337218  NM_001302959           AIP
2   chr11   67233744       67337218  NM_001318496         CABP2
4   chr11   67233744       67337218     NM_004910       PITPNM1
5   chr11   67233744       67337218     NM_005851       CDK2AP2
7   chr11   67233744       67337218     NR_106810       MIR6752
8    chr4    9033973        9228883  NM_001256852      USP17L10
9    chr4    9033973        9228883  NM_001256853      USP17L12
10   chr4    9033973        9228883  NM_001256854      USP17L11
11   chr4    9033973        9228883  NM_001256855      USP17L13
12   chr7   75724654       75829338     NR_135079       GTF2IP7
13   chr9     218868         354813  NM_001190458         DOCK8
15   chr9    9881034       10187161     NM_002839         PTPRD
16   chr9   67077209       67359428     NR_002817        AQP7P1
17   chr9   67077209       67359428     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr2   25543625       25871256  NM_001256304       DTNB
2   chr2   25543625       25871256  NM_001320892     DNMT3A
9   chr2   25543625       25871256     NR_031570    MIR1301
10  chr4   66501208       66803949  NM_001281766      EPHA5
13  chr4   66501208       66803949     NR_034138  EPHA5-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   72573316       72800501     NM_013381      TRHDE
1   chr12   72573316       72800501     NR_026836  TRHDE-AS1
3   chr16    6445022        7408212  NM_001142334     RBFOX1
7   chr16   10532765       10647144  NM_001256160    ATF7IP2
8   chr16   10532765       10647144     NM_001424       EMP2
10   chr4    3890015        4031475     NR_130741    FAM86EP
11   chr9    6572524        7291681     NM_000170       GLDC
12   chr9    6572524        7291681  NM_001146695      KDM4C,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4222848        5014490  NM_001004137        OR52M1
1   chr11    4222848        5014490  NM_001004748        OR51A2
2   chr11    4222848        5014490  NM_001004749        OR51A7
3   chr11    4222848        5014490  NM_001004751        OR51D1
4   chr11    4222848        5014490  NM_001004752        OR51F1
5   chr11    4222848        5014490  NM_001004753        OR51F2
6   chr11    4222848        5014490  NM_001004758        OR51S1
7   chr11    4222848        5014490  NM_001004759        OR51T1
8   chr11    4222848        5014490  NM_001005161        OR52B4
9   chr11    4222848        5014490  NM_001005169        OR52I1
10  chr11    4222848        5014490  NM_001005170        OR52I2
11  chr11    4222848        5014490  NM_001005171        OR52K1
12  chr11    4222848        5014490  NM_001005172        OR52K2
13  chr11    4222848        5014490  NM_001005177        OR52R1
14  chr11    4222848        5014490  NM_001005237        OR51G1
15  chr11    4222848        5014490  NM_001005238        OR51G2
16  chr11    4222848        5014490  NM_001005329        OR51A4
17  chr11    4222848        5014490     NM_003141        TRIM21
18  chr11    4222848        5014490     NM_018073        TRIM68
19  chr11    4222848        5014490     NM_021801         MMP26
20  chr11    4222848        5014490     NM_030774        OR51E2
21  chr11    4222848        5014490     NM_144663      C11orf40
22  chr11    4222848        5014490     NM_152430        OR51E1
23  chr11    4222848        5014490     NR_047550  LOC100506082
24  chr11   48366026       48683905  NM_001005512        OR4A47
25  chr11   48366026       48683905  NM_001005513        OR4C45
26  chr15   99947974      100272510  NM_001130928         MEF2A
27  chr15   99947974      100272510  NM_001284417        LYSMD4
30  chr19   23417432       23533799     NR_045525        ZNF724
31  chr19   23417432       23533799     NR_103741        IPO5P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   47892955       48667032     NM_000088        COL1A1
1   chr17   47892955       48667032  NM_001077503          TAC4
2   chr17   47892955       48667032  NM_001166131          EME1
3   chr17   47892955       48667032  NM_001168215        TMEM92
4   chr17   47892955       48667032  NM_001199158          KAT7
5   chr17   47892955       48667032  NM_001199898          PDK2
8   chr17   47892955       48667032  NM_001242791      FLJ45513
9   chr17   47892955       48667032  NM_001257359        SAMD14
10  chr17   47892955       48667032  NM_001258372       SPATA20
11  chr17   47892955       48667032     NM_001267          CHAD
12  chr17   47892955       48667032  NM_001288968         ACSF2
13  chr17   47892955       48667032     NM_001934          DLX4
14  chr17   47892955       48667032     NM_002204         ITGA3
16  chr17   47892955       48667032     NM_005220          DLX3
17  chr17   47892955       48667032     NM_016504        MRPL27
18  chr17   47892955       48667032     NM_017957          EPN3
19  chr17   47892955       48667032     NM_018346         RSAD1
20  chr17   47892955       48667032     NM_018509        LRRC59
21  chr17   47892955       48667032     NM_018896       CACNA1G
22  chr17   47892955       48667032     NM_022167         XYLT2
23  chr17   47892955       48667032     NM_032133       MYCBPAP
24  chr17   47892955       48667032     NM_032595       PPP1R9B
27  chr17   47892955       48667032     NR_024193         HILS1
28  chr17   47892955       48667032     NR_038230     LOC284080
29  chr17   47892955       48667032     NR_038439   CACNA1G-AS1
31  chr17   47892955       48667032     NR_110806  LOC101927230
32  chr17   47892955       48667032     NR_125805    TMEM92-AS1
33  chr17   47892955       48667032     NR_135553          SGCA
34  chr17   47892955       48667032     NR_135675  LOC105371824
35   chr7  110544275      113094195  NM_001099658         LRRN3
36   chr7  110544275      113094195  NM_001134468        LSMEM1
37   chr7  110544275      113094195  NM_001146266         GPR85
39   chr7  110544275      113094195  NM_001197079         IFRD1
41   chr7  110544275      113094195  NM_001244606        IMMP2L
42   chr7  110544275      113094195  NM_001287497       TMEM168
44   chr7  110544275      113094195     NM_014705         DOCK4
46   chr7  110544275      113094195     NM_021994        ZNF277
48   chr7  110544275      113094195     NM_152556          BMT2
50   chr7  110544275      113094195     NR_024412     LINC00998
51   chr7  110544275      113094195     NR_103806     DOCK4-AS1
52   chr7  110544275      113094195     NR_110158  LOC101928012
53   chr7  110544275      113094195     NR_110160  LOC100996249
54   chr7  110544275      113094195     NR_110162        HRAT17,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0   chr1   87751961       87872810  NM_006769       LMO4
1   chr1   87751961       87872810  NR_038324  LINC01364
2  chr14   26960281       27076648  NM_002515      NOVA1
4   chr9    6576496        6687637  NM_000170       GLDC,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67199015       67581805     NM_000695   ALDH3B2
1   chr11   67199015       67581805     NM_000852     GSTP1
2   chr11   67199015       67581805  NM_001018070    CORO1B
4   chr11   67199015       67581805  NM_001078650   TMEM134
5   chr11   67199015       67581805  NM_001166102    NDUFV1
6   chr11   67199015       67581805  NM_001243750     NUDT8
7   chr11   67199015       67581805  NM_001300895     CABP4
9   chr11   67199015       67581805  NM_001302959       AIP
10  chr11   67199015       67581805  NM_001318496     CABP2
11  chr11   67199015       67581805     NM_003952   RPS6KB2
13  chr11   67199015       67581805     NM_004910   PITPNM1
14  chr11   67199015       67581805     NM_005608   PTPRCAP
15  chr11   67199015       67581805     NM_005851   CDK2AP2
16  chr11   67199015       67581805     NM_005995     TBX10
18  chr11   67199015       67581805     NM_080658      ACY3
21  chr11   67199015       67581805     NM_206997    GPR152
22  chr11   67199015       67581805     NR_024249  FAM86C2P
23  chr11   67199015       67581805     NR_033791    DOC2GP
25  chr11   67199015       67581805     NR_106810   MIR6752
26  chr11   67199015       67581805     NR_130935  C11orf72
27   chr7   71483346       71603057  NM_001017440     CALN1
29   chr9  119630128      119807502     NM_014010     ASTN2, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  107992763      108336263  NM_001079874          VAV3
1    chr1  107992763      108336263  NM_001113228         NTNG1
5    chr1  143070195      143358904     NR_110761  LOC102723769
6   chr10   58525957       61070232  NM_001080512         BICC1
7   chr10   58525957       61070232  NM_001143773        FAM13C
8   chr10   58525957       61070232  NM_001143774       PHYHIPL
9   chr10   58525957       61070232     NM_003201          TFAM
10  chr10   58525957       61070232     NM_003338        UBE2D1
11  chr10   58525957       61070232     NM_018464         CISD1
13  chr10   58525957       61070232     NM_152230          IPMK
15  chr10   58525957       61070232     NR_027508      FAM133CP
16  chr10   58525957       61070232     NR_037490       MIR3924
17  chr10   58525957       61070232     NR_108046     LINC00844
18  chr10   58525957       61070232     NR_131782         CCEPR
19  chr15   98272432       98428781     NR_024172     LINC00923
20   chr2   75923534       76149282  NM_001201334         GCFC2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   63482658       63610683  NM_001039469         MARK2
1   chr11   63482658       63610683  NM_001144936      C11orf95
2   chr11   63482658       63610683  NM_001265591          RTN3
3   chr11   63482658       63610683     NM_138471      C11orf84
4   chr16   21556844       21837149  NM_001077180        METTL9
5   chr16   21556844       21837149  NM_001161683          OTOA
7   chr16   21556844       21837149     NM_005849         IGSF6
10  chr16   21556844       21837149     NR_003370        RRN3P1
11  chr16   21556844       21837149     NR_110930  LOC101927814
12   chr9    4504667        4605130  NM_001039395       SPATA6L
13   chr9    4504667        4605130     NM_004170        SLC1A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  104240920      104474783  NM_001008218         AMY1B
1    chr1  104240920      104474783  NM_001008219         AMY1C
2    chr1  104240920      104474783  NM_001008221         AMY1A
4   chr11    4485920        4629302  NM_001004137        OR52M1
5   chr11    4485920        4629302  NM_001005169        OR52I1
6   chr11    4485920        4629302  NM_001005170        OR52I2
7   chr11    4485920        4629302  NM_001005171        OR52K1
8   chr11    4485920        4629302     NM_018073        TRIM68
9   chr11    4485920        4629302     NM_144663      C11orf40
10  chr11   25571956       26308713  NM_001313726          ANO3
11  chr11   25571956       26308713     NR_132968  LOC105376599
12  chr14   42119355       42239395  NM_001346175         LRFN5
13  chr14   42122539       42479893  NM_001346175         LRFN5
14  chr18     625512         731802  NM_001012716        TYMSOS
15  chr18     625512         731802     NM_001071          TYMS
16  chr18     625512         731802  NM_001126123        ENOSF1
17  chr18     625512         731802  NM_001289036         CLUL1
21  chr18     625512         731802     NM_005433          YES1
24  chr22   19885314       20026105     NM_000754          COMT
27  chr22   19885314       20026105  NM_001282512        TXNRD2
28  chr22   19885314       20026105  NM_001283116        TANGO2
31  chr22   19885314       20026105     NM_001670         ARVCF
34  chr22   19885314       20026105     NR_029706        MIR185
35  chr22   19885314       20026105     NR_039918       MIR4761
36   chr7   64070380       64193722  NM_001282360        ZNF107
37   chr7   64070380       64193722     NR_077227  LOC100128885
39   chr7   64070380       64193722     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   20681317       20782584  NM_001145004   GOLGA6L6
1   chr15   20681317       20782584     NR_027411   GOLGA8CP
2   chr15   20681317       20782584     NR_036432    HERC2P3
3   chr15   28653500       28959616  NM_001282468    GOLGA8M
4   chr15   28653500       28959616     NR_033351    GOLGA8F
5   chr15   28653500       28959616     NR_033353    GOLGA8G
6   chr15   28653500       28959616     NR_036443    HERC2P9
7   chr15   28653500       28959616     NR_039734  MIR4509-3
9    chr4    9020723        9271311  NM_001256852   USP17L10
10   chr4    9020723        9271311  NM_001256853   USP17L12
12   chr4    9020723        9271311  NM_001256854   USP17L11
15   chr4    9020723        9271311  NM_001256855   USP17L13
16   chr4    9020723        9271311  NM_001256857   USP17L17
17   chr4    9020723        9271311  NM_001256860   USP17L19
18   chr4    9020723        9271311  NM_001256861   USP17L20
19   chr4    9020723        9271311  NM_001256894   USP17L15
20   chr7   69112007       69593751  NM_001127231      AUTS2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  189980884      190116829  NM_001317188     BRINP3
2  chr15   85686137       85861354  NM_001310153   GOLGA6L3
3  chr15   85686137       85861354     NR_049748  LOC642423
4  chr16   68568219       68704164  NM_001305204      ZFP90
6  chr16   68568219       68704164  NM_001317195       CDH3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12  130231736      130448473     NM_133448  TMEM132D
1  chr14   21721237       21871923  NM_001170629      CHD8
2  chr14   21721237       21871923     NM_007192   SUPT16H
3  chr14   21721237       21871923     NM_020366   RPGRIP1
5  chr14   21721237       21871923     NM_031314    HNRNPC
6  chr14   21721237       21871923     NR_002916    SNORD8
7  chr14   21721237       21871923     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   42138527       42259635  NM_001346175         LRFN5
1    chr8    7159796        7394934  NM_001040705      DEFB107B
2    chr8    7159796        7394934  NM_001081551      DEFB103A
3    chr8    7159796        7394934  NM_001164457       ZNF705G
4    chr8    7159796        7394934  NM_001205266        DEFB4B
5    chr8    7159796        7394934  NM_001256873       USP17L1
6    chr8    7159796        7394934  NM_001256874       USP17L4
7    chr8    7159796        7394934     NM_058200       SPAG11B
11   chr8    7159796        7394934     NM_080389      DEFB104A
12   chr8    7159796        7394934     NM_152250      DEFB105A
13   chr8    7159796        7394934     NM_152251      DEFB106A
14   chr8    7159796        7394934     NR_003668    DEFB109P1B
15   chr8    7159796        7394934     NR_027423        FAM66B
16   chr8   58184045       58321943     NR_026772     LINC00588
17   chr8   58184045       58321943     NR_125818  LOC101929488,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27182600       27419344  NM_001080406      C12orf71
1   chr12   27182600       27419344  NM_001271811         MED21
2   chr12   27182600       27419344     NM_015000        STK38L
3   chr15   21161430       21269131     NR_040094     LINC01193
4   chr15   82802430       83503787  NM_001007122          FSD2
5   chr15   82802430       83503787  NM_001079533         CPEB1
6   chr15   82802430       83503787  NM_001080435         WHAMM
7   chr15   82802430       83503787  NM_001164465     GOLGA6L10
9   chr15   82802430       83503787  NM_001291420      GOLGA6L9
11  chr15   82802430       83503787     NM_004644         AP3B2
14  chr15   82802430       83503787     NR_003011      SCARNA15
15  chr15   82802430       83503787     NR_004847      UBE2Q2P2
16  chr15   82802430       83503787     NR_026811     GOLGA2P10
18  chr15   82802430       83503787     NR_034139     LOC338963
19  chr15   82802430       83503787     NR_036446      ACTG1P17
20  chr15   82802430       83503787     NR_045529     ADAMTS7P1
21  chr15   82802430       83503787     NR_046096     CPEB1-AS1
22  chr15   82802430       83503787     NR_102747     LOC727751
24  chr15   82802430       83503787     NR_110098        SNHG21
26  chr15   82802430       83503787     NR_111943         RPS17
30  chr15   82802430       83503787     NR_111962    GOLGA6L17P
31  chr15   82802430       83503787     NR_120378  LOC102724034
32  chr17    1140253        1552851  NM_001080779         MYO1C
34  chr17    1140253        1552851  NM_001164405        BHLHA9
35  chr17    1140253        1552851  NM_001284498       SLC43A2
37  chr17    1140253        1552851     NM_005206           CRK
38  chr17    1140253        1552851     NM_006224        PITPNA
39  chr17    1140253        1552851     NM_006761         YWHAE
40  chr17    1140253        1552851     NM_016532        INPP5K
41  chr17    1140253        1552851     NM_031430          RILP
44  chr17    1140253        1552851     NM_172367         TUSC5
45  chr17    1140253        1552851     NR_028075        SCARF1
46  chr17    1140253        1552851     NR_028514    PITPNA-AS1
47  chr20   14552503       14708844     NM_080676       MACROD2
48  chr20   14552503       14708844     NR_104193   MACROD2-IT1
49   chr5  119878590      120049063  NM_001300783         PRR16,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr5  121007692      121220803  NM_177478      FTMT,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr11   30178785       30320221  NM_000510      FSHB
1   chr7  133200715      133323642  NM_021807     EXOC4,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr6   12835649       12940989  NM_001322308       PHACTR1
3  chr6  144777158      144888608     NM_007124          UTRN
4  chr7   64049749       64209091  NM_001282360        ZNF107
5  chr7   64049749       64209091     NR_077227  LOC100128885
7  chr7   64049749       64209091     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67316842       67429456     NM_000852     GSTP1
1   chr11   67316842       67429456  NM_001166102    NDUFV1
2   chr11   67316842       67429456  NM_001243750     NUDT8
3   chr11   67316842       67429456     NM_005995     TBX10
4   chr11   67316842       67429456     NM_080658      ACY3
6   chr11   67316842       67429456     NR_033791    DOC2GP
7   chr11   67316842       67429456     NR_130935  C11orf72
8   chr15   59923271       60686861  NM_001320674     BNIP2
10  chr15   59923271       60686861  NM_001320929    GTF2A2
12  chr15   59923271       60686861     NM_004039     ANXA2
14  chr15   59923271       60686861     NM_012182     FOXB1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  128507441      128620631     NR_104647  LOC100996679
1   chr12  128507441      128620631     NR_104648  LOC101927694
2   chr12  128507441      128620631     NR_131985         CRAT8
3   chr16   21550868       21710477  NM_001077180        METTL9
4   chr16   21550868       21710477  NM_001161683          OTOA
6   chr16   21550868       21710477     NM_005849         IGSF6
8   chr16   21550868       21710477     NR_110930  LOC101927814
9    chr6  136945146      137408633     NM_000288          PEX7
10   chr6  136945146      137408633  NM_001008783       SLC35D3
11   chr6  136945146      137408633  NM_001278722        IL20RA
13   chr6  136945146      137408633     NM_005923        MAP3K5
14   chr6  136945146      137408633     NR_027994         NHEG1
15   chr6  136945146      137408633     NR_125858  LOC101928461
16   chr6  136945146      137408633     NR_134635  LOC101928429
17   chr9   41935363       42049086     NR_003670        FGF7P3
18   chr9   41935363       42049086     NR_015363         GLIDR
21   chr9   41935363       42049086     NR_126048  LOC102724238
22   chr9   41935363       42049086     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  108044036      108146263  NM_001079874          VAV3
2  chr16   21471560       21615930  NM_001077180        METTL9
4  chr16   21471560       21615930     NR_002594      SLC7A5P2
5  chr16   21471560       21615930     NR_027155        SMG1P3
6  chr16   21471560       21615930     NR_049833     MIR3680-2
7  chr16   21471560       21615930     NR_110930  LOC101927814
8   chr2   35690507       35824684     NR_039629      MIR548AD
9   chr5   16064881       16165637  NM_001102562       MARCH11,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67196359       67369099     NM_000852         GSTP1
1   chr11   67196359       67369099  NM_001018070        CORO1B
2   chr11   67196359       67369099  NM_001078650       TMEM134
3   chr11   67196359       67369099  NM_001300895         CABP4
5   chr11   67196359       67369099  NM_001302959           AIP
6   chr11   67196359       67369099  NM_001318496         CABP2
7   chr11   67196359       67369099     NM_003952       RPS6KB2
9   chr11   67196359       67369099     NM_004910       PITPNM1
10  chr11   67196359       67369099     NM_005608       PTPRCAP
11  chr11   67196359       67369099     NM_005851       CDK2AP2
14  chr11   67196359       67369099     NM_206997        GPR152
16  chr11   67196359       67369099     NR_106810       MIR6752
17  chr12  130220680      130536620     NM_133448      TMEM132D
18  chr12  130220680      130536620     NR_024457  LOC100190940
19  chr15   36126908       36247841     NR_038251      DPH6-AS1
20  chr15   36126908       36247841     NR_039735       MIR4510
21   chr7   75893291       76314443  NM_001102594          DTX2
23   chr7   75893291       76314443  NM_001110199         SRRM3
24   chr7   75893291       76314443  NM_001110354           ZP3
25   chr7   75893291       76314443     NM_001540         HSPB1
27   chr7   75893291       76314443     NM_012479         YWHAG
28   chr7   75893291       76314443     NM_030570         UPK3B
29   chr7   75893291       76314443     NM_080744         SSC4D
30   chr7   75893291       76314443     NM_152992        POMZP3
31   chr7   75893291       76314443     NR_003262        FDPSP2
32   chr7   75893291       76314443     NR_029411  LOC100133091
33   chr7  108471278      108771136  NM_001024607       C7orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48265049       48448891  NM_001004702         OR4C3
1   chr11   48265049       48448891  NM_001004725         OR4S1
2   chr11   48265049       48448891  NM_001004726         OR4X1
3   chr11   48265049       48448891  NM_001004727         OR4X2
4   chr11   48265049       48448891  NM_001005513        OR4C45
5   chr13   63316470       63472819     NR_047029     LINC00448
8   chr16   71116736       71238037  NM_001198542         HYDIN
11   chr2  133526418      133930449     NM_207363        NCKAP5
12   chr2  133526418      133930449     NR_135572  LOC101928185
13   chr8  111978465      112123138     NR_125416     LINC01608
15   chr8  111978465      112123138     NR_125418     LINC01609,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56493820       56700046  NM_001142770        PCDH15
3    chr3  172103600      173692205  NM_001135095        FNDC3B
4    chr3  172103600      173692205  NM_001146276         NCEH1
5    chr3  172103600      173692205  NM_001190942       TNFSF10
7    chr3  172103600      173692205     NM_004122          GHSR
8    chr3  172103600      173692205     NM_014932         NLGN1
9    chr3  172103600      173692205     NM_018098          ECT2
11   chr3  172103600      173692205     NM_031955       SPATA16
13   chr3  172103600      173692205     NR_046664     NLGN1-AS1
14   chr7    8607118        8785561     NM_152745         NXPH1
15   chr9   41891684       42084635     NR_003670        FGF7P3
16   chr9   41891684       42084635     NR_015363         GLIDR
19   chr9   41891684       42084635     NR_126048  LOC102724238
20   chr9   41891684       42084635     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr2  110162188      110329094  NM_001099289     SH3RF3
1   chr2  110162188      110329094  NM_001321504     SEPT10
3   chr2  110195868      110349878  NM_001099289     SH3RF3
4   chr2  110195868      110349878  NM_001321504     SEPT10
6   chr5   63769669       63960307  NM_001029875     RGS7BP
8   chr9   41461254       41572191  NM_001113541  SPATA31A5
9   chr9   41461254       41572191     NM_015667  SPATA31A7
10  chr9   41461254       41572191     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12    1003344        1103363  NM_001297419         RAD52
4   chr12    1003344        1103363     NM_018979          WNK1
5   chr12    1003344        1103363     NR_027949          ERC1
6   chr21   23449082       23651528     NR_038400     LINC00308
7   chr21   23449082       23651528     NR_109959  LOC101927843
8    chr5  104425135      104556103     NR_000039       RAB9BP1
9    chr8   58178956       58453864     NR_026772     LINC00588
10   chr8   58178956       58453864     NR_038874     LOC286177
11   chr8   58178956       58453864     NR_125818  LOC101929488,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12779420       12994746  NM_001009611       PRAMEF4
1    chr1   12779420       12994746  NM_001012276       PRAMEF8
2    chr1   12779420       12994746  NM_001013631      HNRNPCL1
3    chr1   12779420       12994746  NM_001080830      PRAMEF12
4    chr1   12779420       12994746  NM_001103170       AADACL3
5    chr1   12779420       12994746  NM_001146181      HNRNPCL3
6    chr1   12779420       12994746  NM_001146344      PRAMEF11
7    chr1   12779420       12994746  NM_001294139       PRAMEF1
8    chr1   12779420       12994746  NM_001302551      HNRNPCL4
10   chr1   12779420       12994746     NM_023014       PRAMEF2
11   chr1   12779420       12994746     NM_152290      C1orf158
12  chr17    5525090        6901487     NM_000697        ALOX12
13  chr17    5525090        6901487  NM_001105520     C17orf100
14  chr17    5525090        6901487  NM_001143838       SLC13A5
15  chr17    5525090        6901487  NM_001195228        FAM64A
16  chr17    5525090        6901487  NM_001285402         AIPL1
19  chr17    5525090        6901487     NM_014804      KIAA0753
20  chr17    5525090        6901487     NM_015253         WSCD1
21  chr17    5525090        6901487     NM_016060         MED31
22  chr17    5525090        6901487     NM_031220       PITPNM3
23  chr17    5525090        6901487     NM_032731       TXNDC17
24  chr17    5525090        6901487     NM_053285         TEKT1
25  chr17    5525090        6901487     NM_153230        FBXO39
26  chr17    5525090        6901487     NR_002710      ALOX12P2
27  chr17    5525090        6901487     NR_039745     MIR4520-1
28  chr17    5525090        6901487     NR_039874     MIR4520-2
29  chr17    5525090        6901487     NR_040000     LOC339166
30  chr17    5525090        6901487     NR_040089    ALOX12-AS1
31  chr17    5525090        6901487     NR_045985      ALOX15P1
32  chr17    5525090        6901487     NR_046398          XAF1
34   chr2   97206644       97919246  NM_001115016        KANSL3
35   chr2   97206644       97919246  NM_001122646       FAM178B
36   chr2   97206644       97919246  NM_001164315       ANKRD36
38   chr2   97206644       97919246  NM_001293083        FER1L5
39   chr2   97206644       97919246  NM_001319085        ARID5A
41   chr2   97206644       97919246  NM_001320849        FAHD2B
42   chr2   97206644       97919246  NM_001322354        LMAN2L
43   chr2   97206644       97919246     NM_016466       ANKRD39
45   chr2   97206644       97919246     NM_017623         CNNM3
46   chr2   97206644       97919246     NM_017789        SEMA4C
47   chr2   97206644       97919246     NM_020184         CNNM4
49   chr2   97206644       97919246     NM_144994       ANKRD23
51   chr2   97206644       97919246     NR_036074       MIR3127
53   chr2   97206644       97919246     NR_110209  LOC101927053
54   chr4  165914042      166024070  NM_001100389       TMEM192
55   chr4  165914042      166024070     NM_152620        TRIM60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245020811      245274909  NM_001143943        EFCAB2
2    chr1  245020811      245274909     NM_004501        HNRNPU
4    chr1  245020811      245274909     NR_111907  LOC101928068
5   chr12   19585849       19698261  NM_001267043         AEBP2
7    chr3    1147073        1290461  NM_001289081         CNTN6
8    chr3  146558656      146713234     NR_135560  LOC101927866
9    chr7   63931945       64086375  NM_001130022        ZNF680
11   chr7   63931945       64086375     NR_033245     LOC641746
12   chr7   63931945       64086375     NR_077227  LOC100128885
13   chr9  132350609      132522108  NM_001286796         NTMT1
17   chr9  132350609      132522108     NM_004878         PTGES
18   chr9  132350609      132522108     NM_016307         PRRX2
19   chr9  132350609      132522108     NM_177999          ASB6
20   chr9  132350609      132522108     NM_199350       C9orf50
21   chr9  132350609      132522108     NR_132102     PRRX2-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr18   63303455       63821674  NM_001317214      CDH7
3   chr7  152378452      152507011     NM_020445    ACTR3B,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  185878373      186003383     NM_031935         HMCN1
1  chr16    6545682        6675940  NM_001308117        RBFOX1
3  chr16   21557130       21660099  NM_001077180        METTL9
5  chr16   21557130       21660099     NM_005849         IGSF6
6  chr16   21557130       21660099     NR_110930  LOC101927814
7   chr7  110590898      110718630  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   15071940       15550523  NM_001128423         MPV17L
1   chr16   15071940       15550523  NM_001270767          NTAN1
2   chr16   15071940       15550523  NM_001277325         NPIPA5
3   chr16   15071940       15550523  NM_001285445         PDXDC1
8   chr16   15071940       15550523  NM_001301064           RRN3
10  chr16   15071940       15550523     NM_033201       C16orf45
11  chr16   15071940       15550523     NR_037466      MIR3180-4
12  chr16   15071940       15550523     NR_106775      MIR6511B1
13  chr16   15071940       15550523     NR_106965      MIR6511B2
14  chr16   15071940       15550523     NR_123721  PKD1P6-NPIPP1
16  chr16   15071940       15550523     NR_125434   LOC100505915,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  104613352      105021229  NM_001007232        CARD17
1   chr11  104613352      105021229     NM_001225         CASP4
2   chr11  104613352      105021229  NM_001257119         CASP1
3   chr11  104613352      105021229     NM_021571        CARD18
5   chr11  104613352      105021229     NM_052889        CARD16
6   chr11  104613352      105021229     NR_024239         CASP5
7   chr11  104613352      105021229     NR_034064        CASP12
8   chr11  104613352      105021229     NR_034078     LOC643733
9   chr11  104613352      105021229     NR_131905       CASP1P2
10  chr16   29484516       29590358     NR_135305        SMG1P2
12   chr7  132761090      132879163  NM_001317178        CHCHD3
14   chr7  132761090      132879163     NR_133931  LOC105375512
15   chr8   16488104       17463470  NM_001008539        SLC7A2
16   chr8   16488104       17463470  NM_001145152        VPS37A
18   chr8   16488104       17463470  NM_001322087         CNOT7
22   chr8   16488104       17463470     NM_004686         MTMR7
23   chr8   16488104       17463470     NM_006207        PDGFRL
25   chr8   16488104       17463470     NM_016353        ZDHHC2
26   chr8   16488104       17463470     NM_019851         FGF20
27   chr8   16488104       17463470     NM_181723         MICU3
28   chr8  103981964      104092592     NM_001695      ATP6V1C1
29   chr8  103981964      104092592     NR_126339     AZIN1-AS1
30   chr9  132360806      132469072  NM_001286796         NTMT1
34   chr9  132360806      132469072     NM_016307         PRRX2
35   chr9  132360806      132469072     NM_177999          ASB6
36   chr9  132360806      132469072     NM_199350       C9orf50,   chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr6   65517700       66894097  NM_001142800         EYS
2  chr6   65517700       66894097  NM_001271675   LOC441155
4  chr6   65517700       66894097     NR_026540  SLC25A51P1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   47815166       47941364  NM_001113498          MDGA2
1    chr4     111096         384818  NM_001039127         ZNF718
2    chr4     111096         384818  NM_001137608         ZNF732
5    chr4     111096         384818     NM_003441         ZNF141
6    chr4     111096         384818     NR_027481        ZNF876P
7    chr4     111096         384818     NR_030297         MIR571
10   chr4   69237745       69381852     NM_014058      TMPRSS11E
11   chr5     161620        3583806  NM_001003841        SLC6A19
12   chr5     161620        3583806  NM_001009877           BRD9
13   chr5     161620        3583806     NM_001044         SLC6A3
14   chr5     161620        3583806  NM_001080478        LRRC14B
15   chr5     161620        3583806  NM_001134222           IRX2
16   chr5     161620        3583806  NM_001166260         TRIP13
17   chr5     161620        3583806  NM_001193376           TERT
18   chr5     161620        3583806  NM_001242412           AHRR
19   chr5     161620        3583806  NM_001278633           IRX4
21   chr5     161620        3583806  NM_001284351         SLC9A3
22   chr5     161620        3583806  NM_001294337        C5orf38
25   chr5     161620        3583806     NM_004168           SDHA
27   chr5     161620        3583806     NM_004553         NDUFS6
28   chr5     161620        3583806     NM_006598        SLC12A7
29   chr5     161620        3583806     NM_007030           TPPP
30   chr5     161620        3583806     NM_007277          EXOC3
31   chr5     161620        3583806     NM_013232          PDCD6
33   chr5     161620        3583806     NM_018140          CEP72
34   chr5     161620        3583806     NM_024786        ZDHHC11
35   chr5     161620        3583806     NM_024830         LPCAT1
36   chr5     161620        3583806     NM_030782        CLPTM1L
37   chr5     161620        3583806     NM_032479         MRPL36
38   chr5     161620        3583806     NM_033120           NKD2
39   chr5     161620        3583806     NM_052909       PLEKHG4B
40   chr5     161620        3583806     NM_145265        CCDC127
41   chr5     161620        3583806     NM_182632        SLC6A18
42   chr5     161620        3583806     NR_003263         SDHAP3
43   chr5     161620        3583806     NR_003713      LOC728613
44   chr5     161620        3583806     NR_024158         PP7080
45   chr5     161620        3583806     NR_033898      LINC01019
46   chr5     161620        3583806     NR_036240        MIR4277
47   chr5     161620        3583806     NR_039661        MIR4456
48   chr5     161620        3583806     NR_039662        MIR4457
49   chr5     161620        3583806     NR_039778        MIR4635
51   chr5     161620        3583806     NR_103444   LOC100996325
52   chr5     161620        3583806     NR_104602   LOC101929034
53   chr5     161620        3583806     NR_104613          HRAT5
54   chr5     161620        3583806     NR_104614   LOC100506688
55   chr5     161620        3583806     NR_104616   LOC100506858
56   chr5     161620        3583806     NR_104617      LINC01377
57   chr5     161620        3583806     NR_104618      LINC01017
58   chr5     161620        3583806     NR_106723        MIR6075
59   chr5     161620        3583806     NR_109911  CTD-3080P12.3
60   chr5     161620        3583806     NR_109912  CTD-2194D22.4
61   chr5     161620        3583806     NR_125375   LOC100288152
62   chr5     161620        3583806     NR_125810      LINC01511
63   chr5     161620        3583806     NR_126522      EXOC3-AS1
65   chr5     161620        3583806     NR_136207   LOC105374620,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr4  169237877      170776238  NM_001012967    DDX60L
1   chr4  169237877      170776238  NM_001166108     PALLD
4   chr4  169237877      170776238  NM_001243372     CLCN3
7   chr4  169237877      170776238     NM_012224      NEK1
8   chr4  169237877      170776238     NM_017631     DDX60
9   chr4  169237877      170776238     NM_017867      HPF1
10  chr4  169237877      170776238     NM_020870    SH3RF1
11  chr4  169237877      170776238     NM_032783      CBR4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr19    1106811        1279551     NM_000455      STK11
1   chr19    1106811        1279551  NM_001001975      ATP5D
2   chr19    1106811        1279551  NM_001100122      SBNO2
3   chr19    1106811        1279551     NM_001280      CIRBP
7   chr19    1106811        1279551     NM_017914   C19orf24
8   chr19    1106811        1279551     NM_152769      CBARP
9   chr19    1106811        1279551     NM_177401       MIDN
11  chr19    1106811        1279551     NR_027271  CIRBP-AS1
12   chr3   65788771       65917829  NM_001033057      MAGI1
14   chr3   65788771       65917829     NR_046575  MAGI1-AS1
15   chr4  169232439      169362098  NM_001012967     DDX60L
17   chr4  169232439      169362098     NM_017631      DDX60
18   chr6  161980407      162213219     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81470310       81768920  NM_001278495        NUTM2B
1   chr10   81470310       81768920     NM_003019         SFTPD
2   chr10   81470310       81768920     NR_002724         MBL1P
3   chr10   81470310       81768920     NR_029407     LOC642361
4   chr10   81470310       81768920     NR_033857       BMS1P21
5   chr10   81470310       81768920     NR_120611    NUTM2B-AS1
8   chr13   80823502       80952580  NM_001318536         SPRY2
11   chr2   97140178       97426144  NM_001115016        KANSL3
12   chr2   97140178       97426144  NM_001285485        NEURL3
13   chr2   97140178       97426144  NM_001293083        FER1L5
14   chr2   97140178       97426144  NM_001319085        ARID5A
16   chr2   97140178       97426144  NM_001322354        LMAN2L
20   chr2   97140178       97426144     NR_135564  LOC105373496
21   chr7  121605091      121949698  NM_001024613         FEZF1
22   chr7  121605091      121949698  NM_001206838        PTPRZ1
23   chr7  121605091      121949698     NM_005763          AASS
24   chr7  121605091      121949698     NR_036484     FEZF1-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   20820734       20934024  NM_001288713     NELL1
1  chr11  131986383      132126883  NM_001048209       NTM
4   chr3   60299291       60598411  NM_001320899      FHIT
5   chr7   64092565       64281183  NM_001160183    ZNF138
6   chr7   64092565       64281183  NM_001282360    ZNF107
9   chr7   64092565       64281183     NR_106898   MIR6839,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12  130284955      130391867     NM_133448  TMEM132D
1   chr3    3833704        3938388  NM_001324189     LRRN1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   59093979       59363282  NM_001085487      MYSM1
1   chr1   59093979       59363282     NM_002228        JUN
2   chr1   59093979       59363282     NR_034014  LINC01135
3  chr14   80062972       80444073  NM_001272020      NRXN3
6   chr7   64156503       64334946  NM_001160183     ZNF138
7   chr7   64156503       64334946  NM_001282360     ZNF107,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145347795      146643073  NM_001012758        NUDT17
1    chr1  145347795      146643073  NM_001039888      ANKRD34A
2    chr1  145347795      146643073  NM_001097612        GPR89A
3    chr1  145347795      146643073  NM_001101663        NBPF11
4    chr1  145347795      146643073  NM_001184795        PEX11B
5    chr1  145347795      146643073  NM_001201325         PDZK1
6    chr1  145347795      146643073  NM_001277444         NBPF9
7    chr1  145347795      146643073  NM_001278141        NBPF12
8    chr1  145347795      146643073  NM_001278267        NBPF20
9    chr1  145347795      146643073  NM_001280799       ANKRD35
10   chr1  145347795      146643073  NM_001302371        NBPF10
11   chr1  145347795      146643073  NM_001303040        ITGA10
12   chr1  145347795      146643073  NM_001303456        POLR3C
13   chr1  145347795      146643073  NM_001313972         TXNIP
15   chr1  145347795      146643073     NM_005105         RBM8A
16   chr1  145347795      146643073     NM_005399        PRKAB2
17   chr1  145347795      146643073     NM_006099         PIAS3
20   chr1  145347795      146643073     NM_007053         CD160
21   chr1  145347795      146643073     NM_014455        RNF115
22   chr1  145347795      146643073     NM_032305       POLR3GL
23   chr1  145347795      146643073     NM_145277          HFE2
24   chr1  145347795      146643073     NM_153713         LIX1L
25   chr1  145347795      146643073     NR_002328        GNRHR2
26   chr1  145347795      146643073     NR_024442     LOC728989
28   chr1  145347795      146643073     NR_103466       NBPF13P
31   chr1  145347795      146643073     NR_104217       NBPF25P
33   chr1  145347795      146643073     NR_106794       MIR6736
35   chr1  145347795      146643073     NR_111936       PDZK1P1
36   chr1  145347795      146643073     NR_121645       RNVU1-8
37   chr1  145347795      146643073     NR_125967  LOC101928979
38   chr1  145347795      146643073     NR_135559  LOC100505824
39  chr13   54838408       54945854     NR_031628       MIR1297
40  chr20   14634838       14774510     NM_080676       MACROD2
41   chr7   64070522       64304385  NM_001160183        ZNF138
42   chr7   64070522       64304385  NM_001282360        ZNF107
44   chr7   64070522       64304385     NR_077227  LOC100128885
46   chr7   64070522       64304385     NR_106898       MIR6839,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  142498425      143848783  NM_001123068       PPIAL4G
1  chr1  142498425      143848783     NR_046228   ANKRD20A12P
2  chr1  142498425      143848783     NR_104014     LINC01138
3  chr1  142498425      143848783     NR_106967       MIR6077
4  chr1  142498425      143848783     NR_110761  LOC102723769
5  chr1  142498425      143848783     NR_111930  LOC100132057,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   28215488       28370744     NM_000275      OCA2
2  chr15   28215488       28370744     NM_004667     HERC2
3   chr6    1887484        2082161  NM_001253846      GMDS
5   chr7  109524760      109627341     NR_003024   EIF3IP1,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr14   26625039       27641376  NM_002515         NOVA1
2  chr14   26625039       27641376  NR_036193       MIR4307
3  chr14   26625039       27641376  NR_110033  LOC101927062
4  chr14   26625039       27641376  NR_110041     MIR4307HG
5  chr14   26625039       27641376  NR_110556  LOC102724890,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   68106513       68241131  NM_001127384    CTNNA3
2   chr11   48284305       49282679  NM_001004702     OR4C3
3   chr11   48284305       49282679  NM_001004725     OR4S1
4   chr11   48284305       49282679  NM_001004726     OR4X1
5   chr11   48284305       49282679  NM_001005512    OR4A47
6   chr11   48284305       49282679  NM_001005513    OR4C45
7   chr11   48284305       49282679  NM_001193472     FOLH1
8   chr11   48284305       49282679  NM_001206626   TRIM49B
9   chr11   48284305       49282679  NM_001206631   TRIM64C
10  chr16   12307229       12745287     NM_032167     SNX29,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    7613411        7760665  NM_001256568    PPFIBP2
2   chr11    7613411        7760665  NM_001302826     CYB5R2
6   chr11    7613411        7760665     NM_198185      OVCH2
7   chr19     935757        1333824     NM_000455      STK11
8   chr19     935757        1333824  NM_001001975      ATP5D
9   chr19     935757        1333824  NM_001039848       GPX4
10  chr19     935757        1333824  NM_001100122      SBNO2
11  chr19     935757        1333824  NM_001258328   ARHGAP45
12  chr19     935757        1333824     NM_001280      CIRBP
17  chr19     935757        1333824  NM_001316323     POLR2E
19  chr19     935757        1333824     NM_001405      EFNA2
21  chr19     935757        1333824     NM_005224     ARID3A
24  chr19     935757        1333824     NM_017914   C19orf24
25  chr19     935757        1333824     NM_019112      ABCA7
26  chr19     935757        1333824     NM_024100      WDR18
27  chr19     935757        1333824     NM_033420    TMEM259
28  chr19     935757        1333824     NM_138690     GRIN3B
29  chr19     935757        1333824     NM_152769      CBARP
30  chr19     935757        1333824     NM_177401       MIDN
31  chr19     935757        1333824     NM_201277       CNN2
33  chr19     935757        1333824     NR_027271  CIRBP-AS1
34  chr19     935757        1333824     NR_125730     RNU6-2
35   chr9   41864502       41979874     NR_003670     FGF7P3
36   chr9   41864502       41979874     NR_015363      GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  237546535      237649504     NM_001035          RYR2
1    chr1  237546535      237649504     NR_039626       MIR4428
2    chr1  245046016      245191220  NM_001143943        EFCAB2
5    chr1  245046016      245191220     NR_111907  LOC101928068
6   chr10   67974670       68213235  NM_001127384        CTNNA3
8   chr14   47735332       51175267     NM_001001       RPL36AL
9   chr14   47735332       51175267  NM_001030001         RPS29
11  chr14   47735332       51175267  NM_001040662        VCPKMT
12  chr14   47735332       51175267  NM_001113498         MDGA2
13  chr14   47735332       51175267  NM_001127713          ATL1
14  chr14   47735332       51175267  NM_001197330         POLE2
16  chr14   47735332       51175267  NM_001282236         CDKL1
17  chr14   47735332       51175267  NM_001301732          NEMF
18  chr14   47735332       51175267     NM_001663          ARF6
19  chr14   47735332       51175267     NM_002408         MGAT2
21  chr14   47735332       51175267     NM_006575        MAP4K5
22  chr14   47735332       51175267     NM_006939          SOS2
23  chr14   47735332       51175267     NM_014315        KLHDC2
24  chr14   47735332       51175267     NM_015684         ATP5S
25  chr14   47735332       51175267     NM_018139        DNAAF2
26  chr14   47735332       51175267     NM_021818          SAV1
27  chr14   47735332       51175267     NM_024884        L2HGDH
28  chr14   47735332       51175267     NM_172193        KLHDC1
32  chr14   47735332       51175267     NR_037503       MIR548Y
33  chr14   47735332       51175267     NR_037793          LRR1
34  chr14   47735332       51175267     NR_039726       MIR4504
35  chr14   47735332       51175267     NR_039996     LINC00648
37  chr14   47735332       51175267     NR_106724       MIR6076
38  chr14   47735332       51175267     NR_126496     LINC01588
43  chr14   47735332       51175267     NR_131171     LINC01599
44  chr14   47786544       47894393  NM_001113498         MDGA2
47  chr19   23462763       23819755  NM_001300951         ZNF91
48  chr19   23462763       23819755     NR_126448     LINC01224
49   chr8    6971579        7311015  NM_001081551      DEFB103A
50   chr8    6971579        7311015  NM_001164457       ZNF705G
51   chr8    6971579        7311015  NM_001205266        DEFB4B
52   chr8    6971579        7311015  NM_001256873       USP17L1
53   chr8    6971579        7311015  NM_001256874       USP17L4
54   chr8    6971579        7311015     NM_058200       SPAG11B
57   chr8    6971579        7311015     NR_003668    DEFB109P1B
58   chr8    6971579        7311015     NR_027000     LINC00965
61   chr8    6971579        7311015     NR_027423        FAM66B
62   chr8  100610589      100721526     NM_017890        VPS13B,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  152962181      153082667  NM_001017418    SPRR2B
1   chr1  152962181      153082667  NM_001024209    SPRR2E
2   chr1  152962181      153082667     NM_003125    SPRR1B
3   chr1  152962181      153082667     NM_005416     SPRR3
4   chr1  152962181      153082667     NM_005988    SPRR2A
5   chr1  152962181      153082667     NM_006945    SPRR2D
6  chr18   24612674       24757949  NM_001256316     CHST9
7   chr2  233034730      233141270  NM_001257281    DIS3L2,    chrom  cnv_start  cnv_terminate       tx_name          gene_name
0  chr16   76820886       76960264     NR_039870            MIR4719
1  chr17   21328853       21472320  NM_001113434           C17orf51
2  chr22   17056261       17163173     NM_014406             CCT8L2
3  chr22   17056261       17163173     NR_001591             TPTEP1
4  chr22   17056261       17163173     NR_040115  ANKRD62P1-PARP4P3
5   chr4   69307745       69530401     NM_001076            UGT2B15
6   chr4   69307745       69530401     NM_001077            UGT2B17
7   chr4   69307745       69530401     NM_014058          TMPRSS11E
8   chr7   75760697       75869096  NM_001110199              SRRM3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   16258000       16363602  NM_001170798   SLC15A5,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr15   98211159       98356680  NR_024172  LINC00923,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1   87720450       88003289     NM_006769           LMO4
1    chr1   87720450       88003289     NR_038324      LINC01364
2   chr16   15064881       15231063  NM_001270767          NTAN1
3   chr16   15064881       15231063  NM_001285445         PDXDC1
8   chr16   15064881       15231063  NM_001301064           RRN3
10  chr16   15064881       15231063     NR_106775      MIR6511B1
11  chr16   15064881       15231063     NR_106965      MIR6511B2
12  chr16   15064881       15231063     NR_123721  PKD1P6-NPIPP1
14  chr16   15064881       15231063     NR_125434   LOC100505915
15  chr17     188366         293706  NM_001013672       C17orf97
16  chr17     188366         293706  NM_001190411         RPH3AL
17  chr17     188366         293706     NM_182705          RFLNB
18  chr17     188366         293706     NR_136407   LOC105371430
19  chr21   44824466       44993564  NM_001320643   LOC102724428
20  chr21   44824466       44993564     NM_007031         HSF2BP
21  chr21   44824466       44993564     NM_173354           SIK1
22  chr21   44824466       44993564     NR_026863      LINC00313
23  chr21   44824466       44993564     NR_026960      LINC00319
24  chr21   44824466       44993564     NR_136540   LOC102724354,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    6718867        7156925     NR_038291     LINC00707
1   chr10    6718867        7156925     NR_108074     LINC00706
2   chr10    6718867        7156925     NR_138480         LINP1
3   chr15   30268535       30490316  NM_001282472       GOLGA8J
4   chr15   30268535       30490316     NR_026771  DKFZP434L187
5   chr15   30268535       30490316     NR_026859        ULK4P3
6   chr15   30268535       30490316     NR_033933       GOLGA8T
7   chr15   42660938       42789657  NM_001284306        ZNF106
9   chr15   42660938       42789657     NM_003825        SNAP23
10  chr15   42660938       42789657     NM_173087         CAPN3
13   chr3   60321479       60591714  NM_001320899          FHIT, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   19648921       19775292  NM_001142308     MALRD1
1  chr10   67947092       68079452  NM_001127384     CTNNA3
3   chr2   51015542       51469515  NM_001330079      NRXN1
6   chr2   51015542       51469515     NR_135237  LOC730100,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   68571097       68696537  NM_001305204     ZFP90
2  chr16   68571097       68696537  NM_001317195      CDH3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   64088097       64359292  NM_001160183    ZNF138
1  chr7   64088097       64359292  NM_001282360    ZNF107
4  chr7   64088097       64359292     NR_106898   MIR6839,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr4    9053882        9227495  NM_001256852  USP17L10
1  chr4    9053882        9227495  NM_001256853  USP17L12
2  chr4    9053882        9227495  NM_001256854  USP17L11
3  chr4    9053882        9227495  NM_001256855  USP17L13
4  chr9   41836721       41959884     NR_003670    FGF7P3
5  chr9   41836721       41959884     NR_015363     GLIDR,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   12210229       12315318  NM_001134232  TMEM106B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21529729       21688231  NM_001077180        METTL9
2   chr16   21529729       21688231     NM_005849         IGSF6
3   chr16   21529729       21688231     NR_002594      SLC7A5P2
4   chr16   21529729       21688231     NR_110930  LOC101927814
5    chr5   59848081       60017461  NM_001145208       DEPDC1B
6    chr5  127858121      129415807  NM_001257308     KIAA1024L
7    chr5  127858121      129415807  NM_001317984       SLC27A6
8    chr5  127858121      129415807     NM_001999          FBN2
9    chr5  127858121      129415807     NM_016048         ISOC1
10   chr5  127858121      129415807     NM_133638      ADAMTS19
11   chr5  127858121      129415807     NM_175856         CHSY3
12   chr5  127858121      129415807     NR_039665       MIR4460
13   chr5  127858121      129415807     NR_039776       MIR4633
14   chr5  127858121      129415807     NR_125748  ADAMTS19-AS1
15   chr7  110628747      110812258  NM_001099658         LRRN3
16   chr7  110628747      110812258  NM_001244606        IMMP2L
18   chr9   66546719       66783463     NR_122076     LOC403323
20   chr9   66546719       66783463     NR_126047     LOC728673,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   12789934       12941523  NM_001009611    PRAMEF4
1   chr1   12789934       12941523  NM_001013631   HNRNPCL1
2   chr1   12789934       12941523  NM_001080830   PRAMEF12
3   chr1   12789934       12941523  NM_001146181   HNRNPCL3
4   chr1   12789934       12941523  NM_001146344   PRAMEF11
5   chr1   12789934       12941523  NM_001294139    PRAMEF1
6   chr1   12789934       12941523  NM_001302551   HNRNPCL4
8   chr1   12789934       12941523     NM_023014    PRAMEF2
9   chr1   12789934       12941523     NM_152290   C1orf158
10  chr2  110196869      110315428  NM_001099289     SH3RF3
11  chr2  110196869      110315428  NM_001321504     SEPT10
13  chr4   98392944       98730034     NM_174952      STPG2
14  chr4   98392944       98730034     NR_102713  STPG2-AS1
15  chr7  110693138      110805493  NM_001099658      LRRN3
16  chr7  110693138      110805493  NM_001244606     IMMP2L
18  chr9   80075484       80217488     NM_004297      GNA14
19  chr9   80075484       80217488     NR_121184  GNA14-AS1
20  chr9  102129466      102233064     NR_102270       NAMA,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1  143731952      143850395  NM_001123068    PPIAL4G
1  chr1  143731952      143850395     NR_104014  LINC01138
2  chr6  162788316      162984583     NM_013988      PARK2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   47748490       47849948  NM_001113498     MDGA2
3   chr9   38954958       39106890     NM_033655   CNTNAP3
4   chr9  116592607      116718376  NM_001318041    ZNF618,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16    6727555        7004829  NM_001142334        RBFOX1
3   chr9   44257838       44989495     NR_121564  LOC101927827
4   chr9   44257838       44989495     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  134228170      134416246     NM_054025     B3GAT1
1   chr11  134228170      134416246     NM_138342     GLB1L2
2   chr11  134228170      134416246     NR_033852  LOC283177
3    chr4   16193808       16304009     NM_153365      TAPT1
4    chr4   16193808       16304009     NR_027696  TAPT1-AS1
5    chr7   18547257       19066526  NM_001204144      HDAC9
14   chr9     261361         464190  NM_001190458      DOCK8,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr9   41842880       41959571  NR_003670    FGF7P3
1  chr9   41842880       41959571  NR_015363     GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20719670       20912242  NM_001145004      GOLGA6L6
1   chr15   20719670       20912242     NR_027411      GOLGA8CP
2   chr15   20719670       20912242     NR_027992        NBEAP1
3   chr15   28694441       28842261     NR_033351       GOLGA8F
4   chr15   28694441       28842261     NR_033353       GOLGA8G
5   chr15   28694441       28842261     NR_039734     MIR4509-3
6   chr16   69990357       70127330  NM_001136214       CLEC18A
9   chr16   69990357       70127330     NR_003610       PDXDC2P
10  chr16   69990357       70127330     NR_036265     MIR1972-2
11   chr7      93103         240104     NM_020223        FAM20C
12   chr7      93103         240104     NR_108065  LOC100507642
13   chr7      93103         240104     NR_134324  LOC105375115
14   chr7      93103         240104     NR_134325  LOC102723672,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10  135219516      135562750     NM_000773    CYP2E1
1  chr10  135219516      135562750  NM_001012508      SPRN
2  chr10  135219516      135562750  NM_001080998     FRG2B
3  chr10  135219516      135562750  NM_001143763     SYCE1
6  chr10  135219516      135562750     NM_138384      MTG1
7  chr10  135219516      135562750     NR_002934    SCART1
8  chr10  135219516      135562750     NR_033789    SPRNP1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  152432287      152620949     NM_019060        CRCT1
1    chr1  152432287      152620949     NM_032563        LCE3D
2    chr1  152432287      152620949     NM_178431        LCE3A
3    chr1  152432287      152620949     NM_178433        LCE3B
4    chr1  152432287      152620949     NM_178434        LCE3C
5    chr1  152432287      152620949     NM_178435        LCE3E
6    chr1  152432287      152620949     NM_178438        LCE5A
7   chr10   37411791       37517633     NM_052997     ANKRD30A
8    chr4   68981364       69213447  NM_001031732       YTHDC1
9    chr4   68981364       69213447     NM_182502    TMPRSS11B
10   chr4   68981364       69213447     NM_207407    TMPRSS11F
11   chr4   68981364       69213447     NR_015446       FTLP10
12   chr4   68981364       69213447     NR_104048  TMPRSS11BNL, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  242671313      242843615     NM_152666       PLD5
1   chr11    7828787        8003812  NM_001003745     OR10A3
2   chr11    7828787        8003812  NM_001004461     OR10A6
3   chr11    7828787        8003812     NM_153445      OR5P3
4   chr11    7828787        8003812     NM_176821     NLRP10
5   chr11    7828787        8003812     NR_027711     OR5E1P
6   chr11    7828787        8003812     NR_036678  LOC283299
7   chr15   28744698       28960599  NM_001282468    GOLGA8M
8   chr15   28744698       28960599     NR_033351    GOLGA8F
9   chr15   28744698       28960599     NR_033353    GOLGA8G
10  chr15   28744698       28960599     NR_036443    HERC2P9
11  chr15   51490031       51821365  NM_001174117      DMXL2
12  chr15   51490031       51821365  NM_001330297       GLDN
13  chr15   51490031       51821365     NM_031226    CYP19A1
15  chr15   51490031       51821365     NR_039863    MIR4713
16  chr15   51490031       51821365     NR_107012  MIR7973-1
17  chr15   51490031       51821365     NR_107013  MIR7973-2
18   chr5   63085730       63277345     NM_000524      HTR1A
19   chr8    8200199        8334925  NM_001080826      PRAG1
20   chr8   97738225       97844658     NM_016134        CPQ,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143061307      143256605     NR_110761  LOC102723769
1   chr15   22185806       22358546     NR_015416     LOC727924
2   chr15   22185806       22358546     NR_110480  LOC101927079
4    chr4    8635535       10229597     NM_000798          DRD5
5    chr4    8635535       10229597  NM_001001290        SLC2A9
6    chr4    8635535       10229597  NM_001040071     LOC650293
7    chr4    8635535       10229597  NM_001040448       DEFB131
8    chr4    8635535       10229597  NM_001242326      USP17L25
16   chr4    8635535       10229597  NM_001256852      USP17L10
17   chr4    8635535       10229597  NM_001256853      USP17L12
19   chr4    8635535       10229597  NM_001256854      USP17L11
22   chr4    8635535       10229597  NM_001256855      USP17L13
23   chr4    8635535       10229597  NM_001256857      USP17L17
24   chr4    8635535       10229597  NM_001256860      USP17L19
25   chr4    8635535       10229597  NM_001256861      USP17L20
26   chr4    8635535       10229597  NM_001256894      USP17L15
27   chr4    8635535       10229597  NM_001306142          HMX1
28   chr4    8635535       10229597     NM_005112          WDR1
31   chr4    8635535       10229597     NR_027279      USP17L6P
32   chr4    8635535       10229597     NR_031688      MIR548I2
33   chr4    8635535       10229597     NR_036090       MIR3138
34   chr4    8635535       10229597     NR_046416      USP17L9P
35   chr7   75721093       75918401  NM_001110199         SRRM3
36   chr7   75721093       75918401     NR_135079       GTF2IP7
37   chr9   20798264       21107653  NM_001010915         HACD4
39   chr9   20798264       21107653     NM_002176         IFNB1
40   chr9   20798264       21107653     NM_017794         FOCAD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   41329158       41477219     NM_005830        MRPS31
1   chr13   41329158       41477219     NM_014252      SLC25A15
2   chr13   41329158       41477219     NR_030352        MIR621
3   chr13   41329158       41477219     NR_038259       TPTE2P5
4   chr16   76533274       76704487  NM_001322181       CNTNAP4
6   chr16   76533274       76704487     NR_110934  LOC101928203
7   chr20   14894559       15376729  NM_001033087       MACROD2
9   chr20   14894559       15376729     NR_037841   MACROD2-AS1
11   chr7   64085666       64204369  NM_001282360        ZNF107
13   chr7   64085666       64204369     NR_106898       MIR6839
14   chr8    7867383        7997704     NR_031689      MIR548I3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   75909725       76023082  NM_001201334     GCFC2
3  chr7  110610778      110901758  NM_001099658     LRRN3
4  chr7  110610778      110901758  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   20655522       20794408  NM_001145004      GOLGA6L6
1  chr15   20655522       20794408     NR_027411      GOLGA8CP
2  chr15   20655522       20794408     NR_036432       HERC2P3
3   chr2   81632859       81903855     NR_110161  LOC100507201
4   chr9  116785932      116967025  NM_001318041        ZNF618
5   chr9  116785932      116967025     NM_001633          AMBP
6   chr9  116785932      116967025     NM_032888       COL27A1
7   chr9  116785932      116967025     NM_138424         KIF12,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0    chr1  243533325      243635568     NM_006642         SDCCAG8
1   chr15   43780737       45529258  NM_001018108           SERF2
2   chr15   43780737       45529258  NM_001141979         TP53BP1
3   chr15   43780737       45529258  NM_001145112           PATL2
4   chr15   43780737       45529258  NM_001167941           WDR76
5   chr15   43780737       45529258  NM_001190214         PPIP5K1
9   chr15   43780737       45529258  NM_001199885            HYPK
10  chr15   43780737       45529258  NM_001258031         SERINC4
11  chr15   43780737       45529258  NM_001276264          DUOXA1
16  chr15   43780737       45529258  NM_001282309        CATSPER2
17  chr15   43780737       45529258  NM_001286490           FRMD5
19  chr15   43780737       45529258  NM_001301168             SHF
21  chr15   43780737       45529258  NM_001321927          CKMT1A
24  chr15   43780737       45529258     NM_002373           MAP1A
25  chr15   43780737       45529258     NM_003104            SORD
26  chr15   43780737       45529258     NM_003758           EIF3J
27  chr15   43780737       45529258     NM_004048             B2M
28  chr15   43780737       45529258     NM_005313           PDIA3
30  chr15   43780737       45529258     NM_005926           MFAP1
31  chr15   43780737       45529258     NM_014080           DUOX2
33  chr15   43780737       45529258     NM_016396         CTDSPL2
34  chr15   43780737       45529258     NM_017434           DUOX1
35  chr15   43780737       45529258     NM_020990          CKMT1B
36  chr15   43780737       45529258     NM_025137           SPG11
37  chr15   43780737       45529258     NM_025165            ELL3
39  chr15   43780737       45529258     NM_152448           TERB2
40  chr15   43780737       45529258     NM_153700            STRC
42  chr15   43780737       45529258     NM_177974           CASC4
43  chr15   43780737       45529258     NM_182985          TRIM69
44  chr15   43780737       45529258     NM_207581          DUOXA2
45  chr15   43780737       45529258     NR_002318      CATSPER2P1
46  chr15   43780737       45529258     NR_003571          PIN4P1
47  chr15   43780737       45529258     NR_031695         MIR1282
48  chr15   43780737       45529258     NR_034170       EIF3J-AS1
50  chr15   43780737       45529258     NR_037673  SERF2-C15ORF63
52  chr15   43780737       45529258     NR_125376    LOC100419583
55  chr18   35054903       35220677     NM_020180           CELF4
56   chr6    5109059        5731516  NM_001164840           LYRM4
58   chr6    5109059        5731516  NM_001318872           FARS2
61   chr6    5109059        5731516     NR_037462         MIR3691
62   chr6    5109059        5731516     NR_110842    LOC101927950
63   chr6    5109059        5731516     NR_125846    LOC101927972
64   chr6    5109059        5731516     NR_126015       LYRM4-AS1,    chrom  cnv_start  cnv_terminate       tx_name        gene_name
0   chr1  143568647      143708712     NR_106967          MIR6077
1   chr1  143568647      143708712     NR_111930     LOC100132057
2   chr2  110191013      110930244     NM_000272            NPHP1
3   chr2  110191013      110930244  NM_001037866            RGPD6
4   chr2  110191013      110930244  NM_001099289           SH3RF3
6   chr2  110191013      110930244  NM_001205288            LIMS4
7   chr2  110191013      110930244  NM_001321504           SEPT10
9   chr2  110191013      110930244     NM_005054            RGPD5
10  chr2  110191013      110930244     NM_005434             MALL
11  chr2  110191013      110930244     NM_023016           SOWAHC
12  chr2  110191013      110930244     NR_027142        LOC440895
13  chr2  110191013      110930244     NR_027145  LIMS3-LOC440895
14  chr2  110191013      110930244     NR_027467            LIMS3
15  chr2  110191013      110930244     NR_036225          MIR4267
16  chr2  110191013      110930244     NR_039941        MIR4436B1
17  chr2  110191013      110930244     NR_046110        LINC01123
18  chr2  134066018      134275374     NM_207363           NCKAP5
19  chr6   38018144       38144515  NM_001172418            BTBD9
20  chr6   38018144       38144515     NM_021943           ZFAND3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108420848      108628762     NM_006113          VAV3
1    chr1  108420848      108628762     NR_046653      VAV3-AS1
2    chr1  108420848      108628762     NR_107006       MIR7852
3    chr1  142678687      142824589     NR_046228   ANKRD20A12P
4   chr11   40288578       40634247  NM_001258419        LRRC4C
6    chr7  143059667      143173390  NM_001278297       FAM131B
7    chr7  143059667      143173390  NM_001322263  LOC100507507
8    chr7  143059667      143173390     NM_003461           ZYX
9    chr7  143059667      143173390     NM_005232         EPHA1
10   chr7  143059667      143173390     NM_177437       TAS2R60
11   chr7  143059667      143173390     NR_033897     EPHA1-AS1
12   chr7  143059667      143173390     NR_106952       MIR6892
13   chr9   30367055       30601959     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   86105611       86252529     NM_017953        ZNHIT6
1    chr1   86105611       86252529     NM_152890       COL24A1
2   chr13   22464928       22853683     NR_103810     LINC00540
3   chr14   47887732       48122636  NM_001113498         MDGA2
4   chr16    6671118        7000420  NM_001142334        RBFOX1
7    chr2   97166942       97346290  NM_001115016        KANSL3
8    chr2   97166942       97346290  NM_001285485        NEURL3
9    chr2   97166942       97346290  NM_001293083        FER1L5
10   chr2   97166942       97346290  NM_001319085        ARID5A
14   chr2   97166942       97346290     NR_135564  LOC105373496,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  102405196      103641253     NM_001854       COL11A1
1   chr1  102405196      103641253     NR_110211         OLFM3
2  chr11    4334934        4515769  NM_001005161        OR52B4
3  chr11    4334934        4515769  NM_001005171        OR52K1
4  chr11    4334934        4515769  NM_001005172        OR52K2
5  chr11    4334934        4515769     NM_003141        TRIM21
6  chr11   30229980       30330178     NM_000510          FSHB
7   chr5   99487850       99744023     NR_027503  LOC100133050
8   chr6  162621961      162745303     NM_013988         PARK2, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143515650      143855134  NM_001123068       PPIAL4G
1    chr1  143515650      143855134     NR_104014     LINC01138
2    chr1  143515650      143855134     NR_106967       MIR6077
3    chr1  143515650      143855134     NR_111930  LOC100132057
4    chr1  145331967      145438026  NM_001277444         NBPF9
5    chr1  145331967      145438026  NM_001278267        NBPF20
6    chr1  145331967      145438026  NM_001302371        NBPF10
7    chr1  145331967      145438026     NM_145277          HFE2
8    chr1  145331967      145438026     NR_104217       NBPF25P
9    chr1  145331967      145438026     NR_125967  LOC101928979
10   chr1  237524887      237789360     NM_001035          RYR2
11   chr1  237524887      237789360     NR_039626       MIR4428
12  chr11   83547411       83884307  NM_001142699          DLG2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   27632214       27771861  NM_001034842       PTCHD3
1   chr10   68052979       68153920  NM_001127384       CTNNA3
3   chr16   29549971       29693004  NM_001030288          SPN
4   chr16   29549971       29693004  NM_001318249         QPRT
6   chr16   29549971       29693004     NR_049833    MIR3680-2
7   chr16   29549971       29693004     NR_135305       SMG1P2
9    chr2   51202460       51404975  NM_001330079        NRXN1
12   chr2   51202460       51404975     NR_135237    LOC730100
13  chr20   14689227       15199925  NM_001033087      MACROD2
15  chr20   14689227       15199925     NR_037841  MACROD2-AS1
17  chr20   14803911       14915246     NM_080676      MACROD2
18  chr20   14803911       14915246     NR_037841  MACROD2-AS1
20   chr5      71941         172215     NM_052909     PLEKHG4B
21   chr6  140452397      140922074     NR_037441      MIR3668
22   chr9    9469401        9609048     NM_002839        PTPRD
23   chr9   39038586       39406976  NM_001085452    SPATA31A1
24   chr9   39038586       39406976     NM_033655      CNTNAP3
25   chr9   39038586       39406976     NR_026803      FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63349946       63937784     NR_047029  LINC00448
3   chr13   63349946       63937784     NR_126409  LINC00376
4   chr16   68768982       68967745  NM_001317184       CDH1
5   chr16   68768982       68967745     NM_024562     TANGO6
6   chr16   68768982       68967745     NR_106988  MIR7641-2
7    chr3    1339678        1854889  NM_001289081      CNTN6
8    chr4   94211225       94334594     NM_001510      GRID2
9    chr7    3340225        3855436     NM_152744       SDK1
10   chr7   56968527       57184981     NR_036246  MIR4283-1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   97340897       97607920  NM_001122646       FAM178B
2   chr2   97340897       97607920  NM_001293083        FER1L5
3   chr2   97340897       97607920  NM_001322354        LMAN2L
4   chr2   97340897       97607920     NM_016466       ANKRD39
6   chr2   97340897       97607920     NM_017623         CNNM3
7   chr2   97340897       97607920     NM_017789        SEMA4C
8   chr2   97340897       97607920     NM_020184         CNNM4
10  chr2   97340897       97607920     NM_144994       ANKRD23
11  chr2   97340897       97607920     NR_036074       MIR3127
12  chr2   97340897       97607920     NR_110209  LOC101927053
13  chr4  169215663      169376194  NM_001012967        DDX60L
15  chr4  169215663      169376194     NM_017631         DDX60,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16    6690010        8108131  NM_001142334     RBFOX1
4   chr3     795959         916808     NR_110118  LINC01266
5   chr6  162347965      162676132     NM_013988      PARK2
6   chr9    9936914       10087257     NM_002839      PTPRD,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11    4849974        4960824  NM_001004749    OR51A7
1  chr11    4849974        4960824  NM_001004758    OR51S1
2  chr11    4849974        4960824  NM_001004759    OR51T1
3  chr11    4849974        4960824  NM_001005237    OR51G1
4  chr11    4849974        4960824  NM_001005238    OR51G2
5  chr11   48395196       48599208  NM_001005512    OR4A47
6  chr19   23668428       23916091     NM_138330    ZNF675
7   chr3    3999983        4381084  NM_001243723    SETMAR,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr4   69239828       69343050     NM_014058  TMPRSS11E
1   chr7   80112894       80950987     NM_000072       CD36
4   chr7   80112894       80950987  NM_001102386      GNAT3
10  chr7   80112894       80950987     NM_006379     SEMA3C
11  chr7   88226757       88418372     NM_181646    ZNF804B
12  chr7  110565300      110789354  NM_001099658      LRRN3
13  chr7  110565300      110789354  NM_001244606     IMMP2L, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   49567306       50160750  NM_001323575         AGBL4
1   chr1   49567306       50160750     NR_046839     AGBL4-IT1
2   chr1   49567306       50160750     NR_125988  LOC101929721
3  chr16   68624753       68735025  NM_001317195          CDH3
4   chr6   65546326       65908479  NM_001142800           EYS
5   chr9    4423820        4633285  NM_001039395       SPATA6L
6   chr9    4423820        4633285     NM_004170        SLC1A1,    chrom  cnv_start  cnv_terminate       tx_name        gene_name
0   chr2  110166677      110769581  NM_001037866            RGPD6
1   chr2  110166677      110769581  NM_001099289           SH3RF3
3   chr2  110166677      110769581  NM_001205288            LIMS4
4   chr2  110166677      110769581  NM_001321504           SEPT10
6   chr2  110166677      110769581     NM_005054            RGPD5
7   chr2  110166677      110769581     NM_023016           SOWAHC
8   chr2  110166677      110769581     NR_027142        LOC440895
9   chr2  110166677      110769581     NR_027145  LIMS3-LOC440895
10  chr2  110166677      110769581     NR_027467            LIMS3
11  chr2  110166677      110769581     NR_046110        LINC01123
12  chr8  100582329      100684032     NM_017890           VPS13B
13  chr9   67618645       67807442     NR_027422           FAM27B
14  chr9   67618645       67807442     NR_103833          FAM27E3
15  chr9   67618645       67807442     NR_121606     LOC102723709
16  chr9   67618645       67807442     NR_144466     LOC105379807,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr20   40677338       41197899  NM_133170     PTPRT,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  102416251      102864222     NR_110211      OLFM3
1  chr20   21909624       22061475     NR_038394  LINC01432
2   chr5   63766199       63898624  NM_001029875     RGS7BP,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr4  189206640      189708172  NR_033869  LINC01060
1  chr9   39001412       39128400  NM_033655    CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  181387896      182225989     NM_000721       CACNA1E
1   chr1  181387896      182225989  NM_001009992        ZNF648
2   chr1  181387896      182225989     NR_104175     LINC01344
3   chr2  242404845      242506905  NM_001271978         STK25
6   chr2  242404845      242506905  NM_001282983         FARP2
8   chr2  242404845      242506905     NM_032515           BOK
9   chr2  242404845      242506905     NR_033346       BOK-AS1
10  chr2  242404845      242506905     NR_036083       MIR3133
11  chr3    7073566        7216599     NM_181874          GRM7
12  chr3  197145544      197494386  NM_001011537        FYTTD1
13  chr3  197145544      197494386  NM_001145642         RUBCN
16  chr3  197145544      197494386     NM_203314          BDH1
18  chr3  197145544      197494386     NR_003266     LOC220729
20  chr3  197145544      197494386     NR_030627        MIR922
21  chr4   69300672       69606799     NM_001076       UGT2B15
22  chr4   69300672       69606799     NM_001077       UGT2B17
23  chr4   69300672       69606799     NM_014058     TMPRSS11E
24  chr7  142996913      143138891     NM_000083         CLCN1
25  chr7  142996913      143138891     NM_001224         CASP2
26  chr7  142996913      143138891  NM_001278297       FAM131B
27  chr7  142996913      143138891  NM_001322263  LOC100507507
28  chr7  142996913      143138891     NM_003461           ZYX
29  chr7  142996913      143138891     NM_005232         EPHA1
32  chr7  142996913      143138891     NR_033897     EPHA1-AS1
33  chr7  142996913      143138891     NR_106952       MIR6892
34  chr8    8130779        8231508  NM_001080826         PRAG1
35  chr9   41742609       42165451     NR_003670        FGF7P3
36  chr9   41742609       42165451     NR_015363         GLIDR
39  chr9   41742609       42165451     NR_126048  LOC102724238
40  chr9   41742609       42165451     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  162775757      163060300  NM_001102445       RGS4
4   chr1  162775757      163060300     NM_016371    HSD17B7
5   chr1  162775757      163060300     NM_178550    CCDC190
6  chr15   85615474       85767325  NM_001243137      PDE8A
8  chr15   85615474       85767325     NR_049748  LOC642423,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  131989635      132305811  NM_001012393         OPCML
1   chr11  131989635      132305811  NM_001048209           NTM
6   chr11  131989635      132305811     NR_046820        NTM-IT
7   chr14   67425430       67527657     NM_020806          GPHN
8   chr15   28706384       28907654     NR_033351       GOLGA8F
9   chr15   28706384       28907654     NR_033353       GOLGA8G
10  chr15   28706384       28907654     NR_036443       HERC2P9
11  chr15   28706384       28907654     NR_039734     MIR4509-3
12  chr18   24846008       24990582     NR_134589  LOC105372038
13   chr2   39672226       39784686     NR_037875     LOC728730
14   chr2  193629927      193804615     NR_002769        PCGEM1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   99173430       99346351  NM_001243270       CNTN5
2   chr20   23353993       23455696  NM_001283018        NAPB
3   chr20   23353993       23455696     NM_080830       CST11
4   chr20   23353993       23455696     NM_138283       CSTL1
5   chr20   23390961       23525446  NM_001283018        NAPB
6   chr20   23390961       23525446     NM_005492        CST8
7   chr20   23390961       23525446     NM_080830       CST11
8   chr20   23390961       23525446     NM_138283       CSTL1
9   chr20   23390961       23525446     NR_001279      CST13P
10   chr3  156123604      156468211  NM_001184717      TIPARP
12   chr3  156123604      156468211  NM_001308197        SSR3
15   chr3  156123604      156468211  NM_001308217      KCNAB1
21   chr3  156123604      156468211     NR_027954  TIPARP-AS1
22   chr3  156123604      156468211     NR_038387   LINC00886
23   chr3  156123604      156468211     NR_046618  KCNAB1-AS1
24   chr7   64097339       64243704  NM_001282360      ZNF107
26   chr7   64097339       64243704     NR_106898     MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   90864270       90985571     NR_030754        MIR622
1   chr15   28273696       28743373     NM_000275          OCA2
3   chr15   28273696       28743373     NM_004667         HERC2
4   chr15   28273696       28743373     NR_033351       GOLGA8F
5   chr15   28273696       28743373     NR_033353       GOLGA8G
6   chr15   28273696       28743373     NR_039734     MIR4509-3
8   chr19    1051735        1180918  NM_001039848          GPX4
9   chr19    1051735        1180918  NM_001100122         SBNO2
10  chr19    1051735        1180918  NM_001258328      ARHGAP45
13  chr19    1051735        1180918  NM_001316323        POLR2E
18  chr19    1051735        1180918     NM_019112         ABCA7
19   chr5   99304381      100612340     NM_005668       ST8SIA4
21   chr5   99304381      100612340     NM_198507       FAM174A
22   chr5   99304381      100612340     NR_027503  LOC100133050
23   chr5   99304381      100612340     NR_031686       MIR548P
24   chr9   22401231       22609898     NM_022160        DMRTA1
25   chr9   31281002       31489926     NR_135134     LINC01243,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr10   38872250       39000903     NR_045000      ACTR3BP5
1    chr10   68032647       68286887  NM_001127384        CTNNA3
3     chr2   97206579      104937740     NM_000877         IL1R1
4     chr2   97206579      104937740     NM_000993         RPL31
5     chr2   97206579      104937740  NM_001008215          COA5
6     chr2   97206579      104937740  NM_001011552        SLC9A4
7     chr2   97206579      104937740  NM_001011717           NMS
8     chr2   97206579      104937740  NM_001025108          AFF3
9     chr2   97206579      104937740  NM_001037872          REV1
10    chr2   97206579      104937740     NM_001079         ZAP70
12    chr2   97206579      104937740  NM_001115016        KANSL3
13    chr2   97206579      104937740  NM_001122646       FAM178B
14    chr2   97206579      104937740  NM_001134224        INPP4A
15    chr2   97206579      104937740  NM_001145664          RFX8
16    chr2   97206579      104937740  NM_001160154        MGAT4A
17    chr2   97206579      104937740  NM_001164315       ANKRD36
19    chr2   97206579      104937740  NM_001204830         LIPT1
20    chr2   97206579      104937740  NM_001261419         IL1R2
21    chr2   97206579      104937740  NM_001282408        IL1RL1
23    chr2   97206579      104937740  NM_001293083        FER1L5
24    chr2   97206579      104937740     NM_001298         CNGA3
25    chr2   97206579      104937740  NM_001317992       C2orf15
26    chr2   97206579      104937740  NM_001319085        ARID5A
28    chr2   97206579      104937740  NM_001320417         MITD1
29    chr2   97206579      104937740  NM_001320849        FAHD2B
35    chr2   97206579      104937740  NM_001321345       TMEM182
36    chr2   97206579      104937740  NM_001322080         MFSD9
37    chr2   97206579      104937740  NM_001322354        LMAN2L
38    chr2   97206579      104937740  NM_001330348        TBC1D8
39    chr2   97206579      104937740  NM_001330354         UNC50
..     ...        ...            ...           ...           ...
62    chr2   97206579      104937740     NM_017623         CNNM3
63    chr2   97206579      104937740     NM_017789        SEMA4C
64    chr2   97206579      104937740     NM_020184         CNNM4
65    chr2   97206579      104937740     NM_024065         PDCL3
66    chr2   97206579      104937740     NM_025190      ANKRD36B
67    chr2   97206579      104937740     NM_025244        TSGA10
71    chr2   97206579      104937740     NM_144994       ANKRD23
73    chr2   97206579      104937740     NM_153836         CREG2
74    chr2   97206579      104937740     NM_173647        RNF149
75    chr2   97206579      104937740     NM_174898          LYG1
76    chr2   97206579      104937740     NM_175735          LYG2
78    chr2   97206579      104937740     NM_198461        LONRF2
80    chr2   97206579      104937740     NM_207362     KIAA1211L
82    chr2   97206579      104937740     NR_003070       SNORD89
83    chr2   97206579      104937740     NR_028356        MRPL30
84    chr2   97206579      104937740     NR_036074       MIR3127
85    chr2   97206579      104937740     NR_038386     LINC01125
86    chr2   97206579      104937740     NR_039930       MIR4772
89    chr2   97206579      104937740     NR_049881       MIR5696
90    chr2   97206579      104937740     NR_103730     LINC01104
91    chr2   97206579      104937740     NR_103732  LOC100506076
95    chr2   97206579      104937740     NR_103791     LINC01127
97    chr2   97206579      104937740     NR_110209  LOC101927053
98    chr2   97206579      104937740     NR_110213  LOC101927142
99    chr2   97206579      104937740     NR_126337  LOC101927070
100   chr2   97206579      104937740     NR_130704  LOC100506123
102   chr2   97206579      104937740     NR_135530  LOC105373519
103   chr2   97206579      104937740     NR_135562  LOC105373518
104   chr2   97206579      104937740     NR_135594  LOC100506286
106   chr7  110525901      110673192  NM_001244606        IMMP2L

[75 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   15419384       15531844  NM_001128423        MPV17L
1   chr16   15419384       15531844  NM_001277325        NPIPA5
2   chr16   15419384       15531844     NM_033201      C16orf45
3   chr16   21498570       21693480  NM_001077180        METTL9
5   chr16   21498570       21693480     NM_005849         IGSF6
6   chr16   21498570       21693480     NM_144672          OTOA
7   chr16   21498570       21693480     NR_002594      SLC7A5P2
8   chr16   21498570       21693480     NR_027155        SMG1P3
9   chr16   21498570       21693480     NR_049833     MIR3680-2
10  chr16   21498570       21693480     NR_110930  LOC101927814
11   chr4  190424875      190940086     NM_004477          FRG1
12   chr4  190424875      190940086     NR_121679     LINC01262
13   chr4  190424875      190940086     NR_132380     LINC01596
14   chr4  190424875      190940086     NR_135513  LOC105379514
15   chr6  146448029      146634900  NM_001278064          GRM1
17   chr9   41862708       42481972  NM_001012419     ANKRD20A3
18   chr9   41862708       42481972  NM_001012421     ANKRD20A2
19   chr9   41862708       42481972     NR_003670        FGF7P3
20   chr9   41862708       42481972     NR_015363         GLIDR
23   chr9   41862708       42481972     NR_126048  LOC102724238
24   chr9   41862708       42481972     NR_126049     LOC554249
25   chr9   41862708       42481972     NR_136310  LOC105379252
26   chr9  102065181      102248000     NR_102270          NAMA,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12793039       13457570  NM_001009611       PRAMEF4
1    chr1   12793039       13457570  NM_001010889       PRAMEF6
3    chr1   12793039       13457570  NM_001010890       PRAMEF9
4    chr1   12793039       13457570  NM_001012276       PRAMEF8
6    chr1   12793039       13457570  NM_001013407       PRAMEF5
8    chr1   12793039       13457570  NM_001013631      HNRNPCL1
9    chr1   12793039       13457570  NM_001024661      PRAMEF14
10   chr1   12793039       13457570  NM_001039361      PRAMEF10
11   chr1   12793039       13457570  NM_001080830      PRAMEF12
12   chr1   12793039       13457570  NM_001098376      PRAMEF15
13   chr1   12793039       13457570  NM_001099850      PRAMEF18
15   chr1   12793039       13457570  NM_001100631      PRAMEF22
17   chr1   12793039       13457570  NM_001136561      HNRNPCL2
18   chr1   12793039       13457570  NM_001146181      HNRNPCL3
19   chr1   12793039       13457570  NM_001146344      PRAMEF11
20   chr1   12793039       13457570  NM_001291381     PRAMEF33P
21   chr1   12793039       13457570  NM_001294139       PRAMEF1
22   chr1   12793039       13457570  NM_001300891      PRAMEF27
24   chr1   12793039       13457570  NM_001302551      HNRNPCL4
25   chr1   12793039       13457570  NM_001306072      PRAMEF26
26   chr1   12793039       13457570  NM_001310134      PRAMEF25
28   chr1   12793039       13457570     NM_023014       PRAMEF2
29   chr1   12793039       13457570     NM_152290      C1orf158
30   chr1   12793039       13457570     NR_111945     PRAMEF36P
32  chr17     165942         277458  NM_001013672      C17orf97
33  chr17     165942         277458  NM_001190411        RPH3AL
34  chr17     165942         277458     NR_040011  LOC100506388
35  chr17     165942         277458     NR_136407  LOC105371430
36  chr20   14801406       15240987  NM_001033087       MACROD2
38  chr20   14801406       15240987     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   86090504       86429940     NM_017953     ZNHIT6
1    chr1   86090504       86429940     NM_152890    COL24A1
2   chr13   46131122       46233131     NM_182542    ERICH6B
3    chr4    8987900        9252170  NM_001256852   USP17L10
4    chr4    8987900        9252170  NM_001256853   USP17L12
5    chr4    8987900        9252170  NM_001256854   USP17L11
7    chr4    8987900        9252170  NM_001256855   USP17L13
8    chr4    8987900        9252170  NM_001256857   USP17L17
9    chr4    8987900        9252170  NM_001256894   USP17L15
10   chr8    6545295        6661295     NM_018361     AGPAT5
11   chr8    6545295        6661295     NR_039803   MIR4659A
12   chr8    6545295        6661295     NR_039807   MIR4659B
13   chr8    6545295        6661295     NR_125386  MCPH1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63166552       63277658     NR_047029     LINC00448
1   chr15   65402138       65529976     NM_003613          CILP
2   chr15   65402138       65529976     NM_005707         PDCD7
3   chr15   65402138       65529976     NM_006660          CLPX
4   chr17   56146471       56567928     NM_000250           MPO
5   chr17   56146471       56567928     NM_000502           EPX
6   chr17   56146471       56567928  NM_001004707         OR4D2
7   chr17   56146471       56567928  NM_001080439          HSF5
8   chr17   56146471       56567928  NM_001165927          MKS1
9   chr17   56146471       56567928  NM_001305544         RNF43
12  chr17   56146471       56567928     NM_003168       SUPT4H1
13  chr17   56146471       56567928     NM_004687         MTMR4
14  chr17   56146471       56567928     NM_004758       TSPOAP1
15  chr17   56146471       56567928     NM_012374         OR4D1
16  chr17   56146471       56567928     NM_080677        DYNLL2
17  chr17   56146471       56567928     NR_002307        MSX2P1
18  chr17   56146471       56567928     NR_027647           LPO
19  chr17   56146471       56567928     NR_029683        MIR142
20  chr17   56146471       56567928     NR_038410   TSPOAP1-AS1
24  chr17   56146471       56567928     NR_039889       MIR4736
25  chr17   56146471       56567928     NR_110809  LOC101927666
26  chr22   19878650       20185582     NM_000754          COMT
29  chr22   19878650       20185582  NM_001190326         DGCR8
30  chr22   19878650       20185582  NM_001243537       CCDC188
31  chr22   19878650       20185582  NM_001278639        RANBP1
34  chr22   19878650       20185582  NM_001282512        TXNRD2
35  chr22   19878650       20185582  NM_001283116        TANGO2
38  chr22   19878650       20185582     NM_001670         ARVCF
41  chr22   19878650       20185582     NM_013373        ZDHHC8
42  chr22   19878650       20185582     NM_022727        TRMT2A
43  chr22   19878650       20185582     NR_029706        MIR185
44  chr22   19878650       20185582     NR_031706       MIR1306
45  chr22   19878650       20185582     NR_037412       MIR3618
46  chr22   19878650       20185582     NR_039918       MIR4761
47  chr22   19878650       20185582     NR_106874       MIR6816
48   chr6   62062715       62391258  NM_001190706      MTRNR2L9
49   chr6   62062715       62391258     NM_152688       KHDRBS2
50   chr9     445332         547441  NM_001190458         DOCK8
51   chr9     445332         547441  NM_001256876         KANK1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   14939204       15263754  NM_001004320      AGMO,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145355107      145727681  NM_001012758        NUDT17
1    chr1  145355107      145727681  NM_001039888      ANKRD34A
2    chr1  145355107      145727681  NM_001184795        PEX11B
3    chr1  145355107      145727681  NM_001201325         PDZK1
4    chr1  145355107      145727681  NM_001277444         NBPF9
5    chr1  145355107      145727681  NM_001278267        NBPF20
6    chr1  145355107      145727681  NM_001280799       ANKRD35
7    chr1  145355107      145727681  NM_001302371        NBPF10
8    chr1  145355107      145727681  NM_001303040        ITGA10
9    chr1  145355107      145727681  NM_001303456        POLR3C
10   chr1  145355107      145727681  NM_001313972         TXNIP
12   chr1  145355107      145727681     NM_005105         RBM8A
13   chr1  145355107      145727681     NM_006099         PIAS3
16   chr1  145355107      145727681     NM_007053         CD160
17   chr1  145355107      145727681     NM_014455        RNF115
18   chr1  145355107      145727681     NM_032305       POLR3GL
19   chr1  145355107      145727681     NM_145277          HFE2
20   chr1  145355107      145727681     NM_153713         LIX1L
21   chr1  145355107      145727681     NR_002328        GNRHR2
25   chr1  145355107      145727681     NR_104217       NBPF25P
26   chr1  145355107      145727681     NR_106794       MIR6736
27   chr1  145355107      145727681     NR_125967  LOC101928979
28   chr1  186173807      186283435  NM_001303232          PRG4
29   chr1  186173807      186283435     NM_003292           TPR
30  chr13   53985992       54441414     NR_047488     LINC00558
31   chr6  162449424      162611078     NM_013988         PARK2
32   chr9   41840548       41952060     NR_126046         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56499186       56809707  NM_001142770        PCDH15
3   chr13  102910853      103025105  NM_001321932         FGF14
10  chr13  102910853      103025105     NR_036486     FGF14-IT1
11  chr13  102910853      103025105     NR_125912     FGF14-AS1
12  chr16   21450251       21575309     NR_002594      SLC7A5P2
13  chr16   21450251       21575309     NR_027155        SMG1P3
14  chr16   21450251       21575309     NR_049833     MIR3680-2
15  chr16   21529639       21658597  NM_001077180        METTL9
17  chr16   21529639       21658597     NM_005849         IGSF6
18  chr16   21529639       21658597     NR_002594      SLC7A5P2
19  chr16   21529639       21658597     NR_110930  LOC101927814
20   chr2  242443019      243175859  NM_001164356         THAP4
21   chr2  242443019      243175859  NM_001165031         DTYMK
22   chr2  242443019      243175859  NM_001167601          NEU4
24   chr2  242443019      243175859  NM_001271978         STK25
27   chr2  242443019      243175859  NM_001287249        D2HGDH
28   chr2  242443019      243175859  NM_001330161          ING5
30   chr2  242443019      243175859     NM_005018         PDCD1
32   chr2  242443019      243175859     NM_022134       GAL3ST2
34   chr2  242443019      243175859     NM_032515           BOK
35   chr2  242443019      243175859     NM_173821          RTP5
36   chr2  242443019      243175859     NM_178326         ATG4B
37   chr2  242443019      243175859     NR_033346       BOK-AS1
38   chr2  242443019      243175859     NR_110220     LINC01237
39   chr2  242443019      243175859     NR_110592  LOC102723927
40   chr2  242443019      243175859     NR_130699     LOC728323
41   chr2  242443019      243175859     NR_135766     LOC285095
44   chr9    9882944       10077621     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63127416       63366478     NR_047029     LINC00448
3   chr16   21505416       21661425  NM_001077180        METTL9
5   chr16   21505416       21661425     NM_005849         IGSF6
6   chr16   21505416       21661425     NR_002594      SLC7A5P2
7   chr16   21505416       21661425     NR_027155        SMG1P3
8   chr16   21505416       21661425     NR_049833     MIR3680-2
9   chr16   21505416       21661425     NR_110930  LOC101927814
10   chr7   10996306       11209769     NM_014660         PHF14
12   chr7   12208740       12350718  NM_001134232      TMEM106B,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   26058442       26484449     NM_017433         MYO3A
1  chr10   26058442       26484449     NR_120650  LOC101929073
2  chr15   79696382       80054541  NM_001330376         TMED3
3  chr15   79696382       80054541     NM_015206      KIAA1024
4   chr8   15949725       16067206     NM_002445          MSR1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143569033      143757109     NR_104014     LINC01138
1   chr1  143569033      143757109     NR_106967       MIR6077
2   chr1  143569033      143757109     NR_111930  LOC100132057
3  chr10   67876608       67991819  NM_001127384        CTNNA3
5   chr5  142383958      142599954  NM_001135608      ARHGAP26
6   chr5  142383958      142599954     NR_046816  ARHGAP26-IT1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48311164       48443306  NM_001004702         OR4C3
1   chr11   48311164       48443306  NM_001004725         OR4S1
2   chr11   48311164       48443306  NM_001005513        OR4C45
3   chr15   28508672       28725891     NM_004667         HERC2
4   chr15   28508672       28725891     NR_033351       GOLGA8F
5   chr15   28508672       28725891     NR_033353       GOLGA8G
6   chr15   28508672       28725891     NR_039734     MIR4509-3
7   chr19    1816622        1942649  NM_001130111       ABHD17A
8   chr19    1816622        1942649     NM_001319       CSNK1G2
9   chr19    1816622        1942649  NM_001329539        SCAMP4
10  chr19    1816622        1942649     NM_020695         REXO1
11  chr19    1816622        1942649     NM_031918         KLF16
12  chr19    1816622        1942649     NM_138422         ADAT3
13  chr19    1816622        1942649     NR_034114  LOC100288123
14   chr5  125582933      126991457  NM_001048252         CTXN3
16   chr5  125582933      126991457  NM_001146319        GRAMD3
19   chr5  125582933      126991457  NM_001164478       C5orf63
21   chr5  125582933      126991457  NM_001198557         LMNB1
22   chr5  125582933      126991457  NM_001201377       ALDH7A1
23   chr5  125582933      126991457  NM_001256545        MEGF10
26   chr5  125582933      126991457     NM_032177          PHAX
27   chr5  125582933      126991457     NM_130809         PRRC1
28   chr5  125582933      126991457     NM_178450        MARCH3
29   chr5  125582933      126991457     NM_207408         TEX43
30   chr5  125582933      126991457     NR_105039  LOC101927488
31   chr5  125582933      126991457     NR_134485  LOC102723557,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   14880110       17375039     NM_000085        CLCNKB
1    chr1   14880110       17375039  NM_001013641        TMEM82
2    chr1   14880110       17375039  NM_001017999          KAZN
5    chr1   14880110       17375039  NM_001024215        FBLIM1
7    chr1   14880110       17375039  NM_001089591        UQCRHL
8    chr1   14880110       17375039  NM_001114600         SZRD1
9    chr1   14880110       17375039  NM_001136216        TMEM51
11   chr1   14880110       17375039  NM_001145277        NECAP2
13   chr1   14880110       17375039  NM_001242884        ZBTB17
14   chr1   14880110       17375039  NM_001257139        CLCNKA
15   chr1   14880110       17375039  NM_001271733         MST1L
16   chr1   14880110       17375039  NM_001278501      C1orf195
18   chr1   14880110       17375039  NM_001282321       FAM231A
20   chr1   14880110       17375039  NM_001310138       FAM231C
22   chr1   14880110       17375039  NM_001310155       FAM231B
23   chr1   14880110       17375039     NM_002403         MFAP2
24   chr1   14880110       17375039     NM_003000          SDHB
25   chr1   14880110       17375039     NM_004431         EPHA2
26   chr1   14880110       17375039     NM_006511        RSC1A1
27   chr1   14880110       17375039     NM_007272          CTRC
28   chr1   14880110       17375039     NM_014424         HSPB7
29   chr1   14880110       17375039     NM_014675         CROCC
30   chr1   14880110       17375039     NM_015001          SPEN
31   chr1   14880110       17375039     NM_015164       PLEKHM2
33   chr1   14880110       17375039     NM_015849        CELA2B
36   chr1   14880110       17375039     NM_017940         NBPF1
37   chr1   14880110       17375039     NM_018994        FBXO42
38   chr1   14880110       17375039     NM_022089       ATP13A2
39   chr1   14880110       17375039     NM_024329         EFHD2
40   chr1   14880110       17375039     NM_024758         AGMAT
41   chr1   14880110       17375039     NM_030907          RSG1
42   chr1   14880110       17375039     NM_032341          DDI2
43   chr1   14880110       17375039     NM_032996         CASP9
44   chr1   14880110       17375039     NM_033440        CELA2A
45   chr1   14880110       17375039     NM_052929         FHAD1
46   chr1   14880110       17375039     NM_153213      ARHGEF19
47   chr1   14880110       17375039     NM_178840       C1orf64
48   chr1   14880110       17375039     NM_182623       FAM131C
49   chr1   14880110       17375039     NM_198546       SPATA21
51   chr1   14880110       17375039     NM_207348      SLC25A34
52   chr1   14880110       17375039     NR_023386       CROCCP3
53   chr1   14880110       17375039     NR_024279      FLJ37453
54   chr1   14880110       17375039     NR_026567         ESPNP
55   chr1   14880110       17375039     NR_026752       CROCCP2
56   chr1   14880110       17375039     NR_027136    TMEM51-AS1
57   chr1   14880110       17375039     NR_027504        MST1P2
58   chr1   14880110       17375039     NR_037446       MIR3675
61   chr1   14880110       17375039     NR_039973       MIR5096
63   chr1   14880110       17375039     NR_109898       DNAJC16
64   chr1   14880110       17375039     NR_135056  LOC105376805
67   chr1   14880110       17375039     NR_135764  LOC100132147
68   chr1   14880110       17375039     NR_135765     LOC440570
70   chr1   14880110       17375039     NR_135824  LOC102724562
71  chr13   63084889       63272965     NR_047029     LINC00448
72   chr9    9504845        9841935     NM_002839         PTPRD
73   chr9    9504845        9841935     NR_135135  LOC105375972,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   67909377       68402585  NM_001127384     CTNNA3
2  chr12   80957403       81224472  NM_001145026      PTPRQ
3  chr12   80957403       81224472  NM_001324423      LIN7A
4  chr12   80957403       81224472     NM_002469       MYF6
5  chr12   80957403       81224472     NM_005593       MYF5
6  chr12   80957403       81224472     NR_120468  LINC01490
7  chr16   61774915       62125907     NM_001796       CDH8
8   chr4  128442992      128582576     NM_015693       INTU, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   81683352       81793980  NM_001256430         STON2
1   chr14   81683352       81793980  NM_001278940        GTF2A1
4   chr14   81683352       81793980     NR_135252  LOC101928504
5   chr15   98261317       98474969     NR_024172     LINC00923
6   chr16   10470687       11140217  NM_001079512        TVP23A
7   chr16   10470687       11140217  NM_001243403       CLEC16A
8   chr16   10470687       11140217  NM_001256160       ATF7IP2
9   chr16   10470687       11140217  NM_001286402         CIITA
10  chr16   10470687       11140217  NM_001323594         NUBP1
14  chr16   10470687       11140217     NM_001424          EMP2
16  chr16   10470687       11140217     NM_014015          DEXI
18  chr16   10470687       11140217     NM_144674         TEKT5
21   chr5  104216861      104692276     NR_000039       RAB9BP1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12783625       12933912  NM_001013631   HNRNPCL1
1    chr1   12783625       12933912  NM_001080830   PRAMEF12
2    chr1   12783625       12933912  NM_001103170    AADACL3
3    chr1   12783625       12933912  NM_001146181   HNRNPCL3
4    chr1   12783625       12933912  NM_001146344   PRAMEF11
5    chr1   12783625       12933912  NM_001294139    PRAMEF1
6    chr1   12783625       12933912  NM_001302551   HNRNPCL4
8    chr1   12783625       12933912     NM_023014    PRAMEF2
9    chr1   12783625       12933912     NM_152290   C1orf158
10  chr13   71702144       71835303     NR_047699  LINC00348
11  chr13   93097259       93342551     NM_004466       GPC5
12  chr13   93097259       93342551     NR_049840   MIR548AS
13  chr14   42063257       42191910  NM_001346175      LRFN5,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr4   94126867       94957082  NM_001510     GRID2
1  chr4   94126867       94957082  NM_005172     ATOH1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18277684       18480199  NM_001282511        NPIPA8
1  chr16   18277684       18480199     NR_103772  LOC100288162
2  chr16   18277684       18480199     NR_106971     MIR6511A4
3  chr16   18277684       18480199     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   78363557       78579690  NM_001142545     ADCK1
1    chr4   71341264       71736088  NM_001037442     RUFY3
2    chr4   71341264       71736088  NM_001098477     GRSF1
4    chr4   71341264       71736088  NM_001145006      MUC7
6    chr4   71341264       71736088  NM_001286731      AMTN
11   chr4   71341264       71736088     NM_016519      AMBN
12   chr4   71341264       71736088     NM_020368      UTP3
13   chr4   71341264       71736088     NM_031889      ENAM
14   chr4   71341264       71736088     NM_144646    JCHAIN
16   chr6  129231774      129742472  NM_001079823     LAMA2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr2  133700069      133861091     NM_207363       NCKAP5
1   chr20   14662502       14998044     NM_080676      MACROD2
2   chr20   14662502       14998044     NR_037841  MACROD2-AS1
4   chr22   32398952       32705223     NM_000343       SLC5A1
5   chr22   32398952       32705223  NM_001010859     C22orf42
6   chr22   32398952       32705223  NM_001098527        RFPL2
11  chr22   32398952       32705223     NM_014227       SLC5A4
12  chr22   32398952       32705223     NR_040114      AP1B1P1
13   chr5   12382629       12700469     NR_033383    LINC01194
14   chr5   12382629       12700469     NR_039659      MIR4454
15   chr9   11969270       12831927     NM_000550        TYRP1
16   chr9   11969270       12831927     NM_203403      LURAP1L
17   chr9   11969270       12831927     NR_125775  LURAP1L-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   23365796       23633912     NR_107021   MIR8054
1  chr12   85498534       85939964  NM_001079910    LRRIQ1
2  chr12   85498534       85939964     NM_006982      ALX1
3  chr16   16474686       16606487  NM_001282511    NPIPA8
4   chr3    2235685        2493154  NM_001206955     CNTN4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   11558521       11685725  NM_001080491        USP6NL
3   chr10   67973025       68219471  NM_001127384        CTNNA3
5   chr11   37917456       38291159     NR_135110  LOC105376633
6   chr20   14692024       17241944  NM_001033087       MACROD2
7   chr20   14692024       17241944  NM_001199866        KIF16B
8   chr20   14692024       17241944  NM_001201528         PCSK2
10  chr20   14692024       17241944     NM_003092        SNRPB2
11  chr20   14692024       17241944     NM_020157          OTOR
14  chr20   14692024       17241944     NR_037841   MACROD2-AS1
16  chr20   14692024       17241944     NR_130924     LOC613266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102385662      102627789     NR_110211         OLFM3
1   chr13   67197250       68590559  NM_001318374         PCDH9
3   chr13   67197250       68590559     NR_046527     PCDH9-AS2
4   chr13   67197250       68590559     NR_046636     PCDH9-AS3
5   chr13   67197250       68590559     NR_046637     PCDH9-AS4
6   chr13   67197250       68590559     NR_130792     LINC00364
7    chr3  160107765      160215211  NM_001190241         IFT80
8    chr3  160107765      160215211  NM_001288753          SMC4
9    chr3  160107765      160215211     NM_002268         KPNA4
11   chr3  160107765      160215211     NM_173084        TRIM59
12   chr3  160107765      160215211     NR_029525       MIR16-2
13   chr3  160107765      160215211     NR_029663        MIR15B
14   chr8    2064646        2660113     NM_003970         MYOM2
15   chr8    2064646        2660113     NR_125423  LOC101927815,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  121618737      121723410  NM_001206838    PTPRZ1
1  chr7  121618737      121723410     NM_005763      AASS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27649302       27907611  NM_001034842        PTCHD3
1   chr10   27649302       27907611  NM_001256411         RAB18
2   chr17   48008223       48254109  NM_001199898          PDK2
5   chr17   48008223       48254109  NM_001257359        SAMD14
6   chr17   48008223       48254109     NM_001934          DLX4
7   chr17   48008223       48254109     NM_002204         ITGA3
9   chr17   48008223       48254109     NM_005220          DLX3
10  chr17   48008223       48254109     NM_032595       PPP1R9B
12  chr17   48008223       48254109     NR_024193         HILS1
13  chr17   48008223       48254109     NR_038230     LOC284080
14  chr17   48008223       48254109     NR_135553          SGCA
15   chr2  236669935      236784173  NM_001244888         AGAP1
17   chr3    4162516        4961410  NM_001164675         SUMF1
18   chr3    4162516        4961410  NM_001168272         ITPR1
19   chr3    4162516        4961410  NM_001243723        SETMAR
21   chr3    4162516        4961410     NR_004428          EGOT
22   chr3    4162516        4961410     NR_037903   BHLHE40-AS1
23   chr3    4162516        4961410     NR_108075     ITPR1-AS1
25   chr3  176610977      176927644  NM_001321193       TBL1XR1
27   chr4   94058860       95729506  NM_001011516        PDLIM5
28   chr4   94058860       95729506  NM_001128429      SMARCAD1
30   chr4   94058860       95729506     NM_001203        BMPR1B
34   chr4   94058860       95729506     NM_001510         GRID2
35   chr4   94058860       95729506     NM_005172         ATOH1
36   chr4   94058860       95729506     NM_014485         HPGDS
38   chr4   94058860       95729506     NR_121610    BMPR1B-AS1
39   chr4   94058860       95729506     NR_125922  LOC101929210
40   chr8   57842994       57992810     NM_017813        IMPAD1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   46998762       47132012  NM_001171506         MCFD2
3   chr2   46998762       47132012     NR_024452     LINC01119
4   chr2   46998762       47132012     NR_034099     LINC01118
5   chr2  193640372      193742138     NR_002769        PCGEM1
6   chr9   41883171       42067013     NR_003670        FGF7P3
7   chr9   41883171       42067013     NR_015363         GLIDR
10  chr9   41883171       42067013     NR_126048  LOC102724238
11  chr9   41883171       42067013     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   89072243       89208843  NM_001143837      NOX4
5   chr18   24579998       24688264  NM_001256316     CHST9
6   chr20   14697116       14831090     NM_080676   MACROD2
7    chr4   81873764       82008382     NM_001201      BMP3
8    chr4   81873764       82008382  NM_001206997   C4orf22
9    chr9    9926101       10032858     NM_002839     PTPRD
10   chr9   39080320       39188413     NM_033655   CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   28156175       28307151     NM_000275      OCA2
2   chr3   60118741       60236515  NM_001320899      FHIT,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   67968635       68262640  NM_001127384     CTNNA3
2  chr15   21173328       21306344     NR_040094  LINC01193
3  chr16   68582201       68713993  NM_001305204      ZFP90
5  chr16   68582201       68713993  NM_001317195       CDH3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  100002324      100472001     NM_000028           AGL
3    chr1  100002324      100472001  NM_001013660         FRRS1
4    chr1  100002324      100472001  NM_001271685       SLC35A3
6    chr1  100002324      100472001     NM_017734         PALMD
7    chr1  100002324      100472001     NR_037516     MIR548AA1
8    chr2  234346120      234764444     NM_000463        UGT1A1
9    chr2  234346120      234764444  NM_001001394        DNAJB3
10   chr2  234346120      234764444     NM_001072        UGT1A6
11   chr2  234346120      234764444  NM_001282962         HJURP
12   chr2  234346120      234764444  NM_001287395        MROH2A
13   chr2  234346120      234764444     NM_003648          DGKD
14   chr2  234346120      234764444     NM_007120        UGT1A4
15   chr2  234346120      234764444     NM_018218         USP40
16   chr2  234346120      234764444     NM_019075       UGT1A10
17   chr2  234346120      234764444     NM_019076        UGT1A8
18   chr2  234346120      234764444     NM_019077        UGT1A7
19   chr2  234346120      234764444     NM_019078        UGT1A5
20   chr2  234346120      234764444     NM_019093        UGT1A3
21   chr2  234346120      234764444     NM_021027        UGT1A9
24   chr2  234346120      234764444     NR_037694  LOC100286922
25  chr22   32355740       32554394     NM_000343        SLC5A1
26  chr22   32355740       32554394  NM_001010859      C22orf42
28  chr22   32355740       32554394     NR_040114       AP1B1P1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12827008       15371283  NM_001006624       PDPN
1    chr1   12827008       15371283  NM_001007257      PRDM2
2    chr1   12827008       15371283  NM_001009611    PRAMEF4
3    chr1   12827008       15371283  NM_001010847     LRRC38
4    chr1   12827008       15371283  NM_001010889    PRAMEF6
6    chr1   12827008       15371283  NM_001010890    PRAMEF9
7    chr1   12827008       15371283  NM_001012276    PRAMEF8
10   chr1   12827008       15371283  NM_001013407    PRAMEF5
12   chr1   12827008       15371283  NM_001013631   HNRNPCL1
13   chr1   12827008       15371283  NM_001017999       KAZN
16   chr1   12827008       15371283  NM_001024661   PRAMEF14
18   chr1   12827008       15371283  NM_001039361   PRAMEF10
20   chr1   12827008       15371283  NM_001080830   PRAMEF12
21   chr1   12827008       15371283  NM_001098376   PRAMEF15
23   chr1   12827008       15371283  NM_001099790   PRAMEF19
25   chr1   12827008       15371283  NM_001099850   PRAMEF18
27   chr1   12827008       15371283  NM_001099851   PRAMEF17
29   chr1   12827008       15371283  NM_001099852   PRAMEF20
31   chr1   12827008       15371283  NM_001100631   PRAMEF22
34   chr1   12827008       15371283  NM_001136561   HNRNPCL2
35   chr1   12827008       15371283  NM_001146181   HNRNPCL3
36   chr1   12827008       15371283  NM_001146344   PRAMEF11
37   chr1   12827008       15371283  NM_001291381  PRAMEF33P
39   chr1   12827008       15371283  NM_001294139    PRAMEF1
40   chr1   12827008       15371283  NM_001300891   PRAMEF27
43   chr1   12827008       15371283  NM_001302551   HNRNPCL4
44   chr1   12827008       15371283  NM_001306072   PRAMEF26
45   chr1   12827008       15371283  NM_001310134   PRAMEF25
50   chr1   12827008       15371283     NM_023014    PRAMEF2
53   chr1   12827008       15371283     NR_111945  PRAMEF36P
55  chr16   68553196       68863044  NM_001305204      ZFP90
57  chr16   68553196       68863044  NM_001317184       CDH1
58  chr16   68553196       68863044  NM_001317195       CDH3
59  chr16   68553196       68863044     NR_106988  MIR7641-2
60  chr17   47859611       48001334  NM_001077503       TAC4
61  chr17   47859611       48001334  NM_001199158       KAT7
62  chr17   47859611       48001334  NM_001242791   FLJ45513
63   chr4   94159659       94306223     NM_001510      GRID2,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  241686690      241953759     NM_001821      CHML
1  chr1  241686690      241953759     NM_003679       KMO
2  chr1  241686690      241953759     NM_014322      OPN3
3  chr1  241686690      241953759     NM_144625     WDR64
4  chr7  123403547      123519126     NM_012269     HYAL4
5  chr7  123403547      123519126     NR_002731    HYALP1
6  chr7  123403547      123519126     NR_125730    RNU6-2
7  chr9    6582750        7046237     NM_000170      GLDC
8  chr9    6582750        7046237  NM_001146695     KDM4C,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67998551       68189189  NM_001127384        CTNNA3
2   chr20   14899633       15303664  NM_001033087       MACROD2
4   chr20   14899633       15303664     NR_037841   MACROD2-AS1
6    chr4   94207047       94398445     NM_001510         GRID2
7    chr5  120552942      121020577     NR_104999  LOC102467226
8    chr8  111881137      112037626     NR_125416     LINC01608
10   chr9   39002946       39108316     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12    5113982        5215597     NM_002234         KCNA5
1   chr17   47947259       48386371     NM_000088        COL1A1
2   chr17   47947259       48386371  NM_001168215        TMEM92
3   chr17   47947259       48386371  NM_001199898          PDK2
6   chr17   47947259       48386371  NM_001257359        SAMD14
7   chr17   47947259       48386371     NM_001934          DLX4
8   chr17   47947259       48386371     NM_002204         ITGA3
10  chr17   47947259       48386371     NM_005220          DLX3
11  chr17   47947259       48386371     NM_032595       PPP1R9B
14  chr17   47947259       48386371     NR_024193         HILS1
15  chr17   47947259       48386371     NR_038230     LOC284080
16  chr17   47947259       48386371     NR_110806  LOC101927230
17  chr17   47947259       48386371     NR_125805    TMEM92-AS1
18  chr17   47947259       48386371     NR_135553          SGCA,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245041038      245185916  NM_001143943        EFCAB2
3    chr1  245041038      245185916     NR_111907  LOC101928068
4   chr12   71501590       72370447  NM_001277227          LGR5
5   chr12   71501590       72370447     NM_004616        TSPAN8
6   chr12   71501590       72370447     NM_014999         RAB21
7   chr12   71501590       72370447     NM_018279        TMEM19
8   chr12   71501590       72370447     NM_031435         THAP2
9   chr12   71501590       72370447     NM_144982        ZFC3H1
10  chr12   71501590       72370447     NM_173353          TPH2
11  chr12   71501590       72370447     NR_024072        MRS2P2
12  chr12   71501590       72370447     NR_027449       TBC1D15
13   chr5   59801266       59982707  NM_001145208       DEPDC1B
14   chr5   59801266       59982707     NR_024617         PART1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   68545504       68682133  NM_001305204     ZFP90
2  chr16   68545504       68682133  NM_001317195      CDH3
3  chr21   22309965       22523365     NM_004540     NCAM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  131439243      131614240  NM_001048209           NTM
1   chr11  131439243      131614240     NR_126159       NTM-AS1
2   chr17   21410806       21624371  NM_001113434      C17orf51
3    chr2  193628516      193773982     NR_002769        PCGEM1
4    chr7   85978641       86835276     NM_000840          GRM3
5    chr7   85978641       86835276  NM_001142326         DMTF1
6    chr7   85978641       86835276  NM_001142749     KIAA1324L
8    chr7   85978641       86835276  NM_001329475       TMEM243
12   chr7   85978641       86835276     NR_136252  LOC101927420,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145341100      145441856  NM_001277444         NBPF9
1    chr1  145341100      145441856  NM_001278267        NBPF20
2    chr1  145341100      145441856  NM_001302371        NBPF10
3    chr1  145341100      145441856  NM_001313972         TXNIP
5    chr1  145341100      145441856     NM_145277          HFE2
6    chr1  145341100      145441856     NR_104217       NBPF25P
7    chr1  145341100      145441856     NR_125967  LOC101928979
8   chr10   53067148       53765858  NM_001098512         PRKG1
10  chr10   53067148       53765858     NM_015235        CSTF2T
11  chr10   68072336       68192822  NM_001127384        CTNNA3
13  chr16   31898897       32059428  NM_001265588        ZNF267
14   chr2   34153260       34306526     NR_126403     LINC01317
15   chr2   34153260       34306526     NR_132381     LINC01318,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21864087       21964550  NM_001163380         RAB2B
1   chr14   21864087       21964550  NM_001170629          CHD8
2   chr14   21864087       21964550  NM_001303523          TOX4
5   chr14   21864087       21964550     NR_002916        SNORD8
6    chr5  175429994      175543264  NM_001265615       FAM153B
7    chr5  175429994      175543264     NR_103794  LOC100996385
8    chr6   12846830       13026814  NM_001322308       PHACTR1
14   chr6  131088203      131214790  NM_001135554       EPB41L2
15   chr6  131088203      131214790  NM_001195597         SMLR1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   19640635       19787455  NM_001142308     MALRD1
1   chr10  128343868      129752392  NM_001030013        NPS
2   chr10  128343868      129752392  NM_001039762    FAM196A
3   chr10  128343868      129752392  NM_001290223      DOCK1
4   chr10  128343868      129752392  NM_001323355      PTPRE
5   chr10  128343868      129752392     NM_152311      CLRN3
6   chr10  128343868      129752392     NM_207426      FOXI2
7   chr13   63367569       63499994     NR_047029  LINC00448
10   chr5   17679485       18127456     NR_134286  LOC646241
12   chr6  162691996      163003309     NM_013988      PARK2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr2   51049017       51171512  NM_001330079     NRXN1
3   chr4    9011916       10263748     NM_000798      DRD5
4   chr4    9011916       10263748  NM_001001290    SLC2A9
5   chr4    9011916       10263748  NM_001040448   DEFB131
6   chr4    9011916       10263748  NM_001242326  USP17L25
14  chr4    9011916       10263748  NM_001256852  USP17L10
15  chr4    9011916       10263748  NM_001256853  USP17L12
17  chr4    9011916       10263748  NM_001256854  USP17L11
20  chr4    9011916       10263748  NM_001256855  USP17L13
21  chr4    9011916       10263748  NM_001256857  USP17L17
22  chr4    9011916       10263748  NM_001256860  USP17L19
23  chr4    9011916       10263748  NM_001256861  USP17L20
24  chr4    9011916       10263748  NM_001256894  USP17L15
25  chr4    9011916       10263748     NM_005112      WDR1
27  chr4    9011916       10263748     NR_027279  USP17L6P
28  chr4    9011916       10263748     NR_031688  MIR548I2
29  chr4    9011916       10263748     NR_036090   MIR3138
30  chr4    9011916       10263748     NR_046416  USP17L9P,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  108422545      108931591  NM_001143989         NBPF4
1   chr1  108422545      108931591     NM_006113          VAV3
2   chr1  108422545      108931591     NM_013386      SLC25A24
4   chr1  108422545      108931591     NR_046653      VAV3-AS1
5   chr1  108422545      108931591     NR_107006       MIR7852
6   chr1  245040159      246329822  NM_001143943        EFCAB2
7   chr1  245040159      246329822  NM_001167740         SMYD3
9   chr1  245040159      246329822     NM_018012        KIF26B
12  chr1  245040159      246329822     NR_111907  LOC101928068,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   20994476       21102325  NM_001277303     POTEB2
1   chr15   20994476       21102325     NM_207355     POTEB3
2   chr15   20994476       21102325     NR_036062  MIR3118-2
4   chr17   48079180       48219214  NM_001199898       PDK2
7   chr17   48079180       48219214  NM_001257359     SAMD14
8   chr17   48079180       48219214     NM_002204      ITGA3
10  chr17   48079180       48219214     NM_032595    PPP1R9B
11  chr17   48079180       48219214     NR_038230  LOC284080,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr10   67990159       68384105  NM_001127384       CTNNA3
2  chr14   47900589       48091987  NM_001113498        MDGA2
3  chr16   83088696       83735606  NM_001220488        CDH13
5  chr16   83088696       83735606     NR_036147      MIR3182
6  chr20   14705898       15050352     NM_080676      MACROD2
7  chr20   14705898       15050352     NR_037841  MACROD2-AS1
9   chr6  129245183      129375504  NM_001079823        LAMA2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr16   26843372       27149499  NM_001145545    C16orf82
1   chr19   47767833       48204330  NM_001009813       MEIS3
2   chr19   47767833       48204330  NM_001271749       C5AR2
4   chr19   47767833       48204330  NM_001277075      ZNF541
5   chr19   47767833       48204330  NM_001291296        KPTN
8   chr19   47767833       48204330     NM_001736       C5AR1
9   chr19   47767833       48204330     NM_014681       DHX34
10  chr19   47767833       48204330     NM_015063      SLC8A2
11  chr19   47767833       48204330     NM_015603       CCDC9
12  chr19   47767833       48204330     NM_015711     GLTSCR1
14  chr19   47767833       48204330     NM_178511      INAFM1
16  chr19   47767833       48204330     NR_038452    NAPA-AS1
17  chr19   47767833       48204330     NR_038457        NAPA
18  chr20   25363878       25614798  NM_001042472      ABHD12
19  chr20   25363878       25614798  NM_001318226        NINL
21  chr20   25363878       25614798     NM_021067       GINS1
22  chr20   25363878       25614798     NM_152667        NANP
23  chr20   25363878       25614798     NR_126465  ZNF337-AS1
26   chr8    6804204        7256915  NM_001164457     ZNF705G
27   chr8    6804204        7256915  NM_001256873     USP17L1
28   chr8    6804204        7256915  NM_001256874     USP17L4
29   chr8    6804204        7256915  NM_001302265      DEFA1B
30   chr8    6804204        7256915     NM_004084       DEFA1
32   chr8    6804204        7256915     NM_005217       DEFA3
33   chr8    6804204        7256915     NM_021010       DEFA5
34   chr8    6804204        7256915     NR_003668  DEFB109P1B
35   chr8    6804204        7256915     NR_027000   LINC00965
38   chr8    6804204        7256915     NR_027423      FAM66B
39   chr8    6804204        7256915     NR_029386     DEFA10P
40   chr8    6804204        7256915     NR_036686      DEFT1P
42   chr8    6804204        7256915     NR_073407      DEFA8P
43   chr8    6804204        7256915     NR_073408      DEFA9P
44   chr8    6804204        7256915     NR_073421     DEFA11P,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   42145581       42246315  NM_001346175      LRFN5
1    chr3  131204000      131701037  NM_001289112      CPNE4
2    chr3  131204000      131701037     NM_007208      MRPL3
5    chr4   12662901       14333547  NM_001017979      RAB28
6    chr4   12662901       14333547     NM_001189     NKX3-2
7    chr4   12662901       14333547     NM_148894     BOD1L1
8    chr4   12662901       14333547     NR_015450  LINC01096
9    chr4   12662901       14333547     NR_033931  LINC01085
10   chr4   12662901       14333547     NR_034054  LINC01097
11   chr4   12662901       14333547     NR_049814    MIR5091
12   chr4   12662901       14333547     NR_121681  LINC01182
13   chr5  167269811      167471228  NM_001080428      TENM2
15   chr9  116347495      116459157  NM_001276260       RGS3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67255111       67396160     NM_000852         GSTP1
1   chr11   67255111       67396160  NM_001166102        NDUFV1
2   chr11   67255111       67396160  NM_001243750         NUDT8
3   chr11   67255111       67396160  NM_001302959           AIP
4   chr11   67255111       67396160  NM_001318496         CABP2
6   chr11   67255111       67396160     NM_004910       PITPNM1
7   chr11   67255111       67396160     NM_005851       CDK2AP2
9   chr11   67255111       67396160     NR_033791        DOC2GP
11  chr11   67255111       67396160     NR_106810       MIR6752
12  chr11   67255111       67396160     NR_130935      C11orf72
13  chr11  108533347      110281868  NM_001260492           RDX
16  chr11  108533347      110281868     NM_004398         DDX10
17  chr11  108533347      110281868     NM_033390       ZC3H12C
18  chr11  108533347      110281868     NM_207645      C11orf87
19  chr11  108533347      110281868     NR_135100  LOC105369486
20  chr15   27002897       27140580     NM_000810        GABRA5
22  chr15   27002897       27140580  NM_001278631        GABRB3
24  chr18   14690878       14800741  NM_001145029      ANKRD30B
25   chr7  110631008      110767517  NM_001099658         LRRN3
26   chr7  110631008      110767517  NM_001244606        IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr3    4017591        5015965  NM_001164675        SUMF1
1  chr3    4017591        5015965  NM_001168272        ITPR1
2  chr3    4017591        5015965  NM_001243723       SETMAR
4  chr3    4017591        5015965     NR_004428         EGOT
5  chr3    4017591        5015965     NR_037903  BHLHE40-AS1
6  chr3    4017591        5015965     NR_108075    ITPR1-AS1,   chrom  cnv_start  cnv_terminate    tx_name   gene_name
0  chr4   69301873       69448885  NM_001077     UGT2B17
1  chr4   69301873       69448885  NM_014058   TMPRSS11E
2  chr8    6541629        6721126  NM_018361      AGPAT5
3  chr8    6541629        6721126  NM_207411        XKR5
4  chr8    6541629        6721126  NR_039803    MIR4659A
5  chr8    6541629        6721126  NR_039807    MIR4659B
6  chr8    6541629        6721126  NR_045217  GS1-24F4.2
7  chr8    6541629        6721126  NR_125386   MCPH1-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr2   25457798       25840466  NM_001256304      DTNB
2   chr2   25457798       25840466  NM_001320892    DNMT3A
11  chr2   25457798       25840466     NR_031570   MIR1301
12  chr5   59804556       59915097  NM_001145208   DEPDC1B
13  chr5   59804556       59915097     NR_024617     PART1,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr4  145090836      145580542  NM_022475      HHIP
1  chr4  145090836      145580542  NR_037595  HHIP-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   42134521       42266887  NM_001346175     LRFN5
1   chr7   11791359       11929042     NM_015204    THSD7A,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   95819040       96622272  NM_001261833          JRKL
1  chr11   95819040       96622272  NM_001318737        CCDC82
3  chr11   95819040       96622272     NM_032427         MAML2
4  chr11   95819040       96622272     NR_036125      MIR1260B
5  chr11   95819040       96622272     NR_047481      JRKL-AS1
6  chr11   95819040       96622272     NR_135097  LOC105369443
7  chr12   71518068       71937187  NM_001277227          LGR5
8  chr12   71518068       71937187     NM_004616        TSPAN8,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142809862      143178252     NR_110761  LOC102723769
1    chr1  145136026      145557267  NM_001039888      ANKRD34A
2    chr1  145136026      145557267  NM_001184795        PEX11B
3    chr1  145136026      145557267  NM_001277444         NBPF9
4    chr1  145136026      145557267  NM_001278267        NBPF20
5    chr1  145136026      145557267  NM_001280799       ANKRD35
6    chr1  145136026      145557267  NM_001302371        NBPF10
7    chr1  145136026      145557267  NM_001303040        ITGA10
8    chr1  145136026      145557267  NM_001313972         TXNIP
10   chr1  145136026      145557267     NM_005105         RBM8A
12   chr1  145136026      145557267     NM_032305       POLR3GL
13   chr1  145136026      145557267     NM_145277          HFE2
14   chr1  145136026      145557267     NM_153713         LIX1L
15   chr1  145136026      145557267     NM_203458      NOTCH2NL
16   chr1  145136026      145557267     NR_002328        GNRHR2
20   chr1  145136026      145557267     NR_104217       NBPF25P
21   chr1  145136026      145557267     NR_125967  LOC101928979
22  chr11   84064700       84166760  NM_001142699          DLG2
24  chr12   27192824       27441176  NM_001080406      C12orf71
25  chr12   27192824       27441176     NM_015000        STK38L
26   chr2  110194670      110643011  NM_001037866         RGPD6
27   chr2  110194670      110643011  NM_001099289        SH3RF3
29   chr2  110194670      110643011  NM_001321504        SEPT10
31   chr2  110194670      110643011     NM_005054         RGPD5
32   chr2  110194670      110643011     NM_023016        SOWAHC,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17     185205         519193  NM_001013672      C17orf97
1   chr17     185205         519193  NM_001128159         VPS53
2   chr17     185205         519193  NM_001190411        RPH3AL
4   chr17     185205         519193     NM_182705         RFLNB
5   chr17     185205         519193     NR_136407  LOC105371430
6   chr17   78192368       78373829     NM_000199          SGSH
7   chr17   78192368       78373829  NM_001166349      SLC26A11
8   chr17   78192368       78373829  NM_001256071        RNF213
10  chr17   78192368       78373829     NR_029376  LOC100294362
11   chr7  132775663      132993395  NM_001037126         EXOC4
13   chr7  132775663      132993395     NR_106749       MIR6133
14   chr7  132775663      132993395     NR_133931  LOC105375512
15   chr8  124939454      125040536  NM_001039112        FER1L6
16   chr8  124939454      125040536     NR_040044    FER1L6-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr18   24631541       25666492  NM_001256316         CHST9
1   chr18   24631541       25666492  NM_001308176          CDH2
3   chr18   24631541       25666492     NR_134589  LOC105372038
4    chr3  172043939      172409963  NM_001135095        FNDC3B
5    chr3  172043939      172409963  NM_001146276         NCEH1
6    chr3  172043939      172409963  NM_001190942       TNFSF10
8    chr3  172043939      172409963     NM_004122          GHSR
11   chr7   75861980       75979291  NM_001110199         SRRM3
12   chr7   75861980       75979291     NM_001540         HSPB1
13   chr7   75861980       75979291     NM_012479         YWHAG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   11538979       11639252  NM_001080491        USP6NL
3   chr10   67676349       68150355  NM_001127384        CTNNA3
5   chr13   90936379       91536582     NR_120414     LINC01049
6    chr2  216241655      217579444     NM_000597        IGFBP2
7    chr2  216241655      217579444     NM_000599        IGFBP5
8    chr2  216241655      217579444     NM_000998        RPL37A
9    chr2  216241655      217579444  NM_001127207      SMARCAL1
10   chr2  216241655      217579444  NM_001142310       TMEM169
11   chr2  216241655      217579444  NM_001306129           FN1
16   chr2  216241655      217579444     NM_018000          MREG
17   chr2  216241655      217579444     NM_018441          PECR
18   chr2  216241655      217579444     NM_020814        MARCH4
19   chr2  216241655      217579444     NM_021141         XRCC5
21   chr2  216241655      217579444     NR_037195     LINC00607
22   chr2  216241655      217579444     NR_037701         PKI55
23   chr2  216241655      217579444     NR_110392     LINC01280
24   chr2  216241655      217579444     NR_110607  LOC102724849
25   chr2  216241655      217579444     NR_132383     LINC01614
26  chr20   23369950       24855135     NM_000099          CST3
27  chr20   23369950       24855135  NM_001008693          CST9
28  chr20   23369950       24855135  NM_001283018          NAPB
30  chr20   23369950       24855135     NM_001322          CST2
31  chr20   23369950       24855135  NM_001323606       SYNDIG1
33  chr20   23369950       24855135     NM_001898          CST1
34  chr20   23369950       24855135     NM_001899          CST4
35  chr20   23369950       24855135     NM_001900          CST5
36  chr20   23369950       24855135     NM_005492          CST8
37  chr20   23369950       24855135     NM_080610         CST9L
38  chr20   23369950       24855135     NM_080830         CST11
39  chr20   23369950       24855135     NM_138283         CSTL1
40  chr20   23369950       24855135     NM_178311        GGTLC1
42  chr20   23369950       24855135     NR_001279        CST13P
43  chr20   23369950       24855135     NR_040102      FLJ33581
44  chr22   32371647       32586834     NM_000343        SLC5A1
45  chr22   32371647       32586834  NM_001010859      C22orf42
46  chr22   32371647       32586834  NM_001098527         RFPL2
51  chr22   32371647       32586834     NR_040114       AP1B1P1
52   chr7   29459654       29653361  NM_001293069          CHN2
56   chr7   29459654       29653361  NM_001329997         PRR15
59   chr7   69308878       70887877  NM_001127231         AUTS2
61   chr7   69308878       70887877     NM_022479       WBSCR17
62   chr7   69308878       70887877     NR_037477     MIR3914-1
63   chr7   69308878       70887877     NR_037479     MIR3914-2
64   chr9     454674         744009  NM_001190458         DOCK8
65   chr9     454674         744009  NM_001256876         KANK1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   85419276       85741132  NM_001079910     LRRIQ1
1   chr12   85419276       85741132  NM_001100917    TSPAN19
2   chr12   85419276       85741132     NM_006982       ALX1
3    chr7   75759640       75968564  NM_001110199      SRRM3
4    chr7   75759640       75968564     NM_001540      HSPB1
5    chr7   75759640       75968564     NM_012479      YWHAG
6    chr9   28608777       28792438  NM_001258282     LINGO2
8    chr9   88390546       88580650  NM_001321881      NAA35
11   chr9   88390546       88580650     NR_029410  LOC389765,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11  134180357      134309026  NM_001080407     GLB1L3
1  chr11  134180357      134309026     NM_054025     B3GAT1
2  chr11  134180357      134309026     NM_138342     GLB1L2
3  chr11  134180357      134309026     NR_033852  LOC283177
4   chr2  133767962      133899278     NM_207363     NCKAP5,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  117314732      117497790     NM_207303     ATRNL1
1   chr14   47734950       47846285  NM_001113498      MDGA2
4   chr15   66993791       67161242     NM_005585      SMAD6
5    chr2   95942238       96088603  NM_001034914     KCNIP3
6    chr2   95942238       96088603  NM_001321070      PROM2
8    chr2   95942238       96088603     NM_016044     FAHD2A
9    chr4   91170151       91293520  NM_001145065     CCSER1
11   chr4  188283815      188410013     NR_038931  LOC339975
12   chr6   94385032       94513685     NR_015362       TSG1
13   chr9  132371296      132635880     NM_000113      TOR1A
14   chr9  132371296      132635880  NM_001286796      NTMT1
18   chr9  132371296      132635880     NM_004878      PTGES
19   chr9  132371296      132635880     NM_006676      USP20
20   chr9  132371296      132635880     NM_014506      TOR1B
21   chr9  132371296      132635880     NM_016307      PRRX2
22   chr9  132371296      132635880     NM_016520    C9orf78
23   chr9  132371296      132635880     NM_177999       ASB6
24   chr9  132371296      132635880     NM_199350    C9orf50
25   chr9  132371296      132635880     NR_106914    MIR6855
26   chr9  132371296      132635880     NR_132102  PRRX2-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr19   23867468       24007052     NM_138286    ZNF681
1   chr19   23867468       24007052     NM_138330    ZNF675
2   chr19   23867468       24007052     NR_003662   RPSAP58
3    chr2   50857135       50985924  NM_001330082     NRXN1
4    chr2   50857135       50985924     NR_130470   MIR8485
5    chr4    9003005        9637159  NM_001040448   DEFB131
6    chr4    9003005        9637159  NM_001242326  USP17L25
14   chr4    9003005        9637159  NM_001256852  USP17L10
15   chr4    9003005        9637159  NM_001256853  USP17L12
17   chr4    9003005        9637159  NM_001256854  USP17L11
20   chr4    9003005        9637159  NM_001256855  USP17L13
21   chr4    9003005        9637159  NM_001256857  USP17L17
22   chr4    9003005        9637159  NM_001256860  USP17L19
23   chr4    9003005        9637159  NM_001256861  USP17L20
24   chr4    9003005        9637159  NM_001256894  USP17L15
25   chr4    9003005        9637159     NR_027279  USP17L6P
26   chr4    9003005        9637159     NR_031688  MIR548I2
27   chr4    9003005        9637159     NR_046416  USP17L9P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12988751       13108239  NM_001010889       PRAMEF6
1    chr1   12988751       13108239  NM_001010890       PRAMEF9
2    chr1   12988751       13108239  NM_001099850      PRAMEF18
3    chr1   12988751       13108239  NM_001100631      PRAMEF22
4    chr1   12988751       13108239  NM_001306072      PRAMEF26
5    chr1   12988751       13108239  NM_001310134      PRAMEF25
6   chr11   83595284       83707346  NM_001142699          DLG2
10  chr20   25377087       25605820  NM_001318226          NINL
11  chr20   25377087       25605820     NM_021067         GINS1
12  chr20   25377087       25605820     NM_152667          NANP
13  chr20   25377087       25605820     NR_126465    ZNF337-AS1
16   chr7   75874267       76266573  NM_001102594          DTX2
18   chr7   75874267       76266573  NM_001110199         SRRM3
19   chr7   75874267       76266573  NM_001110354           ZP3
20   chr7   75874267       76266573     NM_001540         HSPB1
22   chr7   75874267       76266573     NM_012479         YWHAG
23   chr7   75874267       76266573     NM_030570         UPK3B
24   chr7   75874267       76266573     NM_080744         SSC4D
25   chr7   75874267       76266573     NM_152992        POMZP3
26   chr7   75874267       76266573     NR_003262        FDPSP2
27   chr7   75874267       76266573     NR_029411  LOC100133091,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12767200       12880850  NM_001080830      PRAMEF12
1    chr1   12767200       12880850  NM_001103170       AADACL3
2    chr1   12767200       12880850  NM_001294139       PRAMEF1
4    chr1   12767200       12880850     NM_152290      C1orf158
5   chr10   55670114       55773712  NM_001142770        PCDH15
8   chr13   89161850       89301497     NR_047021     LINC00433
9   chr13   89161850       89301497     NR_047490     LINC00560
10  chr16   61807229       62179703     NM_001796          CDH8
11   chr7  132759327      132862073  NM_001317178        CHCHD3
13   chr7  132759327      132862073     NR_133931  LOC105375512,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  193326779      193510290     NR_125789  LINC01031
1   chr11    6712388        7312591  NM_001004460     OR10A2
2   chr11    6712388        7312591  NM_001004489     OR2AG1
3   chr11    6712388        7312591  NM_001004490     OR2AG2
4   chr11    6712388        7312591  NM_001004684      OR2D3
5   chr11    6712388        7312591     NM_003696      OR6A2
6   chr11    6712388        7312591     NM_003700      OR2D2
7   chr11    6712388        7312591     NM_013249     ZNF214
8   chr11    6712388        7312591     NM_013250     ZNF215
9   chr11    6712388        7312591     NM_014469     RBMXL2
10  chr11    6712388        7312591     NM_175733       SYT9
11  chr11    6712388        7312591     NM_176822     NLRP14
12  chr11    6712388        7312591     NM_178168     OR10A5
13  chr11    6712388        7312591     NM_207186     OR10A4
14  chr11    6712388        7312591     NR_003945     GVINP1
15  chr11    6712388        7312591     NR_031683    MIR302E,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   52945173       53058697     NM_004498    ONECUT1
1   chr15   52945173       53058697     NM_019600    FAM214A
3    chr2  167167065      167333971     NM_002976      SCN7A
4    chr2  167167065      167333971     NM_002977      SCN9A
5    chr5     150329         303282  NM_001080478    LRRC14B
6    chr5     150329         303282     NM_004168       SDHA
7    chr5     150329         303282     NM_013232      PDCD6
8    chr5     150329         303282     NM_052909   PLEKHG4B
9    chr5     150329         303282     NM_145265    CCDC127
11   chr5     150329         303282     NR_104613      HRAT5
12   chr6  162380463      162507451     NM_013988      PARK2
13   chr9   39003919       39386587  NM_001085452  SPATA31A1
14   chr9   39003919       39386587     NM_033655    CNTNAP3
15   chr9   39003919       39386587     NR_026803    FAM74A1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  145275599      145409776  NM_001277444         NBPF9
1  chr1  145275599      145409776  NM_001278267        NBPF20
2  chr1  145275599      145409776  NM_001302371        NBPF10
3  chr1  145275599      145409776     NM_203458      NOTCH2NL
4  chr1  145275599      145409776     NR_104217       NBPF25P
5  chr1  145275599      145409776     NR_125967  LOC101928979
6  chr7  110652273      110976809  NM_001099658         LRRN3
7  chr7  110652273      110976809  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   85226520       85406662     NR_038859  LINC00311
1  chr16   85226520       85406662     NR_049816    MIR5093
2   chr2   34164434       34384381     NR_126403  LINC01317
3   chr2   34164434       34384381     NR_132381  LINC01318
4   chr9    4432673        4648506  NM_001039395    SPATA6L
5   chr9    4432673        4648506     NM_004170     SLC1A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   13016400       13122944  NM_001013407       PRAMEF5
1    chr1   13016400       13122944  NM_001099850      PRAMEF18
2    chr1   13016400       13122944  NM_001100631      PRAMEF22
3    chr1   13016400       13122944  NM_001306072      PRAMEF26
4    chr1   13016400       13122944  NM_001310134      PRAMEF25
5   chr16   14979527       15084956  NM_001285445        PDXDC1
11  chr16   14979527       15084956     NM_006985        NPIPA1
12  chr16   14979527       15084956     NM_014287         NOMO1
13  chr16   14979527       15084956     NR_036140     MIR3179-1
14  chr16   14979527       15084956     NR_036141     MIR3180-1
15  chr16   14979527       15084956     NR_036142     MIR3180-2
16  chr16   14979527       15084956     NR_103772  LOC100288162
17  chr16   14979527       15084956     NR_106970     MIR6511A3
18  chr16   14979527       15084956     NR_107060     MIR6770-2
19  chr16   14979527       15084956     NR_128713     MIR3670-4
20  chr16   68562139       68688823  NM_001305204         ZFP90
22  chr16   68562139       68688823  NM_001317195          CDH3
23   chr7  110677000      110821107  NM_001099658         LRRN3
24   chr7  110677000      110821107  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   54777084       54886770     NR_031628       MIR1297
1   chr16    6990821        7147210  NM_001142334        RBFOX1
4   chr18   55764496       55883725  NM_001144964        NEDD4L
8   chr20   14684810       14839388     NM_080676       MACROD2
9    chr7   64049429       64318732  NM_001160183        ZNF138
10   chr7   64049429       64318732  NM_001282360        ZNF107
12   chr7   64049429       64318732     NR_077227  LOC100128885
14   chr7   64049429       64318732     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate    tx_name   gene_name
0  chr13   18061493       19496983  NR_047508   LINC00417
1  chr13   18061493       19496983  NR_104118   LINC00408
2  chr13   18061493       19496983  NR_138091  ANKRD20A9P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81467870       81604499  NM_001278495        NUTM2B
1   chr10   81467870       81604499     NR_029407     LOC642361
2   chr10   81467870       81604499     NR_120611    NUTM2B-AS1
5   chr13   90900024       91234483     NR_120414     LINC01049
6   chr20   40628722       40977033     NM_133170         PTPRT
7   chr22   20568103       20896045  NM_001256523         ZNF74
8   chr22   20568103       20896045  NM_001293236         MED15
10  chr22   20568103       20896045     NM_153334        SCARF2
11  chr22   20568103       20896045     NR_033825        KLHL22
12  chr22   20568103       20896045     NR_136569     LOC729461
13  chr22   20568103       20896045     NR_136572  LOC101927859,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr5   99309928       99746425  NR_027503  LOC100133050
1  chr7    3341448        3634535  NM_152744          SDK1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   96492114       97813469     NM_000769     CYP2C19
1   chr10   96492114       97813469     NM_000770      CYP2C8
2   chr10   96492114       97813469     NM_000771      CYP2C9
3   chr10   96492114       97813469     NM_000772     CYP2C18
4   chr10   96492114       97813469  NM_001001732      CC2D2B
5   chr10   96492114       97813469  NM_001098175      ENTPD1
6   chr10   96492114       97813469  NM_001130446   C10orf131
7   chr10   96492114       97813469  NM_001143973       TCTN3
9   chr10   96492114       97813469  NM_001290295      SORBS1
12  chr10   96492114       97813469  NM_001323413    ALDH18A1
14  chr10   96492114       97813469     NM_019084        CCNJ
15  chr10   96492114       97813469     NM_020992      PDLIM1
16  chr10   96492114       97813469     NM_207321       ACSM6
17  chr10   96492114       97813469     NR_038444  ENTPD1-AS1
19   chr6   92064565       92312053     NR_039786     MIR4643
20   chr7   94277673       94393270  NM_001184962       PEG10
21   chr7   94277673       94393270  NM_001301139        SGCE
22   chr9   24416628       24764549  NM_001271706      IZUMO3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    5130732        5463084  NM_001047160          NET1
1   chr10    5130732        5463084  NM_001253908        AKR1C3
3   chr10    5130732        5463084     NM_001818        AKR1C4
5   chr10    5130732        5463084     NM_024803        TUBAL3
6   chr10    5130732        5463084     NM_053049          UCN3
7   chr10    5130732        5463084     NR_027916       AKR1C8P
8   chr16   21492708       21873809  NM_001077180        METTL9
9   chr16   21492708       21873809  NM_001161683          OTOA
11  chr16   21492708       21873809  NM_001310148        NPIPB4
12  chr16   21492708       21873809     NM_005849         IGSF6
15  chr16   21492708       21873809     NR_002594      SLC7A5P2
16  chr16   21492708       21873809     NR_003370        RRN3P1
17  chr16   21492708       21873809     NR_027155        SMG1P3
18  chr16   21492708       21873809     NR_049833     MIR3680-2
19  chr16   21492708       21873809     NR_110930  LOC101927814
20  chr22   17224574       17336259     NM_175878          XKR3
21  chr22   17224574       17336259     NR_003607       HSFY1P1
22  chr22   17224574       17336259     NR_134584  LOC101929350
23   chr7   14871668       15093808     NM_004080          DGKB
25   chr7   88935406       89160309     NM_181646       ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    4814010        4945802  NM_001004749     OR51A7
1   chr11    4814010        4945802  NM_001004753     OR51F2
2   chr11    4814010        4945802  NM_001004758     OR51S1
3   chr11    4814010        4945802  NM_001004759     OR51T1
4   chr11    4814010        4945802  NM_001005177     OR52R1
5   chr11    4814010        4945802  NM_001005237     OR51G1
6   chr11    4814010        4945802  NM_001005238     OR51G2
7   chr13   46163499       46271898     NM_182542    ERICH6B
8   chr13   46163499       46271898     NR_125786  LINC01055
9   chr13   85964823       86092678     NR_046989  LINC00351
10  chr14   80054435       80183572  NM_001272020      NRXN3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13  113088253      113288069  NM_001286278    TUBGCP3
3   chr13  113088253      113288069     NM_145248     SPACA7
4   chr15   79699857       79954332  NM_001330376      TMED3
5   chr15   79699857       79954332     NM_015206   KIAA1024
6   chr20    5145781        5391667     NM_003818       CDS2
7   chr20    5145781        5391667     NM_144773     PROKR2
8    chr5   17760125       17917736     NR_134286  LOC646241
10   chr7   11001372       12020253     NM_014660      PHF14
11   chr7   11001372       12020253     NM_015204     THSD7A
13   chr9   39042715       39473607  NM_001085452  SPATA31A1
14   chr9   39042715       39473607     NM_033655    CNTNAP3
15   chr9   39042715       39473607     NR_003528    ZNF658B
16   chr9   39042715       39473607     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   26931423       27170954     NM_000810    GABRA5
2  chr15   26931423       27170954  NM_001191320    GABRB3
5   chr6  162835405      162936480     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145353513      145463898  NM_001277444         NBPF9
1    chr1  145353513      145463898  NM_001278267        NBPF20
2    chr1  145353513      145463898  NM_001302371        NBPF10
3    chr1  145353513      145463898  NM_001313972         TXNIP
5    chr1  145353513      145463898     NM_032305       POLR3GL
6    chr1  145353513      145463898     NM_145277          HFE2
7    chr1  145353513      145463898     NR_104217       NBPF25P
8    chr1  145353513      145463898     NR_125967  LOC101928979
9    chr2   51170607       51317920  NM_001330079         NRXN1
12   chr2   51170607       51317920     NR_135237     LOC730100
13   chr2  110161172      110580291  NM_001037866         RGPD6
14   chr2  110161172      110580291  NM_001099289        SH3RF3
16   chr2  110161172      110580291  NM_001321504        SEPT10
18   chr2  110161172      110580291     NM_005054         RGPD5
19   chr2  110161172      110580291     NM_023016        SOWAHC
20  chr21   13482266       15014399     NM_174981         POTED
21  chr21   13482266       15014399     NR_026916    ANKRD30BP2
22  chr21   13482266       15014399     NR_036164     MIR3156-3
23  chr21   13482266       15014399     NR_110544  LOC102724188,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr3   28941492       29852368  NM_001003792      RBMS3
2  chr3   28941492       29852368     NR_109804  RBMS3-AS3
3  chr7  110591530      110771514  NM_001099658      LRRN3
4  chr7  110591530      110771514  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   55752179       56787130  NM_001142770        PCDH15
3   chr10   55752179       56787130     NR_031642      MIR548F1
4   chr10   55752179       56787130     NR_134503  LOC105378311
5   chr11   20852464       21117908  NM_001288713         NELL1
6   chr17   63507084       63671881  NM_001037325        CEP112
9   chr17   63507084       63671881     NM_004655         AXIN2
10   chr2   35445234       35710977     NR_039629      MIR548AD,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67265244       67567985     NM_000695   ALDH3B2
1   chr11   67265244       67567985     NM_000852     GSTP1
3   chr11   67265244       67567985  NM_001166102    NDUFV1
4   chr11   67265244       67567985  NM_001243750     NUDT8
5   chr11   67265244       67567985  NM_001318496     CABP2
6   chr11   67265244       67567985     NM_004910   PITPNM1
7   chr11   67265244       67567985     NM_005851   CDK2AP2
8   chr11   67265244       67567985     NM_005995     TBX10
9   chr11   67265244       67567985     NM_080658      ACY3
11  chr11   67265244       67567985     NR_024249  FAM86C2P
12  chr11   67265244       67567985     NR_033791    DOC2GP
14  chr11   67265244       67567985     NR_130935  C11orf72
15   chr7  110609244      110757064  NM_001099658     LRRN3
16   chr7  110609244      110757064  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67892669       67993433  NM_001127384     CTNNA3
2   chr16   72575486       73016916  NM_001164766      ZFHX3
4   chr16   72575486       73016916     NR_126330  LINC01572
5   chr17     331540         607734  NM_001128159      VPS53
7    chr3   26051230       26717671  NM_001317808     LRRC3B
11   chr4   28370828       28995575     NR_036237    MIR4275,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   55700387       55923692  NM_001142770    PCDH15
3  chr10   68114600       68270302  NM_001127384    CTNNA3
5   chr7   64087252       64213414  NM_001282360    ZNF107
7   chr7   64087252       64213414     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   14091854       14315763  NM_001007530        CDRT15
1   chr17   14091854       14315763     NM_001303         COX10
2   chr17   14091854       14315763     NM_006041      HS3ST3B1
3   chr17   14091854       14315763     NR_026880      MGC12916
4    chr2   39673463       39786753     NR_037875     LOC728730
5    chr3   60196061       60296359  NM_001320899          FHIT
6    chr6   65581095       65698576  NM_001142800           EYS
7    chr6  162765836      162872291     NM_013988         PARK2
8    chr7  143063574      143506170  NM_001008747       CTAGE15
9    chr7  143063574      143506170  NM_001130025         TCAF2
11   chr7  143063574      143506170  NM_001322263  LOC100507507
12   chr7  143063574      143506170     NM_003461           ZYX
13   chr7  143063574      143506170     NM_005232         EPHA1
15   chr7  143063574      143506170     NM_176883       TAS2R41
16   chr7  143063574      143506170     NM_177437       TAS2R60
17   chr7  143063574      143506170     NM_178561        CTAGE6
18   chr7  143063574      143506170     NR_033897     EPHA1-AS1
19   chr7  143063574      143506170     NR_106952       MIR6892
20   chr7  143063574      143506170     NR_110549       TCAF2P1
21   chr9   39063185       39283130     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr3    2254096        3739281  NM_001173482          CRBN
1   chr3    2254096        3739281  NM_001206955         CNTN4
3   chr3    2254096        3739281  NM_001302946         TRNT1
5   chr3    2254096        3739281     NM_175726         IL5RA
8   chr3    2254096        3739281     NR_046554     CNTN4-AS1
9   chr6  140815140      141022064     NR_039675       MIR4465
10  chr7  124934100      125120040     NR_110188  LOC101928283,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   20817572       21004945  NM_001288713     NELL1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   83983818       84119582  NM_001080442       SLC38A8
1   chr16   83983818       84119582     NM_003791        MBTPS1
2   chr16   83983818       84119582     NM_019065        NECAB2
3   chr16   83983818       84119582     NM_182981        OSGIN1
4    chr2   97212951       97353772  NM_001115016        KANSL3
5    chr2   97212951       97353772  NM_001293083        FER1L5
6    chr2   97212951       97353772  NM_001319085        ARID5A
9    chr2  181909306      182030986  NM_001278554        UBE2E3
12   chr2  181909306      182030986     NR_130784  LOC101927156
13   chr7   64099885       64424421  NM_001160183        ZNF138
14   chr7   64099885       64424421  NM_001282360        ZNF107
15   chr7   64099885       64424421     NM_021148        ZNF273
18   chr7   64099885       64424421     NR_106898       MIR6839
19   chr7   64045747       64445323  NM_001160183        ZNF138
20   chr7   64045747       64445323  NM_001282360        ZNF107
21   chr7   64045747       64445323     NM_015852        ZNF117
22   chr7   64045747       64445323     NM_021148        ZNF273
24   chr7   64045747       64445323     NR_077227  LOC100128885
26   chr7   64045747       64445323     NR_106898       MIR6839
27   chr7   71490562       71635987  NM_001017440         CALN1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr18     752918        2101231  NM_001099733    ADCYAP1
2  chr18     752918        2101231     NM_005433       YES1
3  chr18     752918        2101231     NR_023927  LINC00470
4   chr8  135631438      135733558  NM_001174158       ZFAT,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  245004297      245114429  NM_001312871     COX20
2   chr1  245004297      245114429     NM_004501    HNRNPU
4   chr1  245004297      245114429     NR_132782  SNORA100
5  chr10   37421664       37565183     NM_052997  ANKRD30A,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr19   23405227       23552162  NM_001300951      ZNF91
1   chr19   23405227       23552162     NR_045525     ZNF724
2   chr19   23405227       23552162     NR_103741     IPO5P1
3    chr7  110545774      110818628  NM_001099658      LRRN3
4    chr7  110545774      110818628  NM_001244606     IMMP2L
6    chr8      52026         531225  NM_001005504     OR4F21
7    chr8      52026         531225  NM_001042415     ZNF596
9    chr8      52026         531225  NM_001256113       TDRP
13   chr8      52026         531225     NM_012173     FBXO25
15   chr8      52026         531225     NR_003572  RPL23AP53
16   chr8      52026         531225     NR_103537     FAM87A,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr16   68832467       69140338  NM_001199280      HAS3
1   chr16   68832467       69140338  NM_001317184      CDH1
2   chr16   68832467       69140338     NM_024562    TANGO6
4   chr18     593167         740449  NM_001012716    TYMSOS
5   chr18     593167         740449     NM_001071      TYMS
6   chr18     593167         740449  NM_001126123    ENOSF1
7   chr18     593167         740449  NM_001289036     CLUL1
11  chr18     593167         740449     NM_005433      YES1
14   chr9   28721019       28966311  NM_001258282    LINGO2
15   chr9   28721019       28966311     NR_030597    MIR876
16   chr9   28721019       28966311     NR_030618    MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67670079       67797090  NM_001127384        CTNNA3
2   chr11   67336894       67441274     NM_000695       ALDH3B2
3   chr11   67336894       67441274     NM_000852         GSTP1
5   chr11   67336894       67441274  NM_001166102        NDUFV1
6   chr11   67336894       67441274  NM_001243750         NUDT8
7   chr11   67336894       67441274     NM_005995         TBX10
8   chr11   67336894       67441274     NM_080658          ACY3
10  chr11   67336894       67441274     NR_033791        DOC2GP
11  chr11   67336894       67441274     NR_130935      C11orf72
12   chr2  216270125      216396221  NM_001306129           FN1
15   chr2  216270125      216396221     NR_110607  LOC102724849
16   chr6    5181187        5313547  NM_001164840         LYRM4
18   chr6    5181187        5313547  NM_001318872         FARS2
21   chr6    5181187        5313547     NR_126015     LYRM4-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   40294587       40574462  NM_001258419    LRRC4C
2   chr6  130129409      130244626  NM_001010876   TMEM244
3   chr7  145897725      146099090     NM_014141   CNTNAP2
4   chr9   16779764       17333660  NM_001114395     CNTLN
6   chr9   16779764       17333660     NM_017637      BNC2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  102386673      102628051     NR_110211     OLFM3
1   chr1  233725294      233855940     NM_002245     KCNK1
2   chr1  233725294      233855940     NR_039625   MIR4427
3  chr11   31247144       31538002  NM_001304274    IMMP1L
4  chr11   31247144       31538002     NM_019040      ELP4
5  chr11   31247144       31538002     NM_181706   DNAJC24
6  chr11   31247144       31538002     NM_181807     DCDC1
7   chr4   94090519       94192195     NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108453882      108622171     NM_006113          VAV3
1    chr1  108453882      108622171     NR_046653      VAV3-AS1
2   chr11   67314543       67474479     NM_000695       ALDH3B2
3   chr11   67314543       67474479     NM_000852         GSTP1
5   chr11   67314543       67474479  NM_001166102        NDUFV1
6   chr11   67314543       67474479  NM_001243750         NUDT8
7   chr11   67314543       67474479     NM_005995         TBX10
8   chr11   67314543       67474479     NM_080658          ACY3
10  chr11   67314543       67474479     NR_033791        DOC2GP
11  chr11   67314543       67474479     NR_130935      C11orf72
12  chr13   19689690       19953182     NM_006001        TUBA3C
13  chr13   19689690       19953182     NR_027248     ANKRD26P3
14  chr13   19689690       19953182     NR_034026     LINC00421
15  chr13   19689690       19953182     NR_126054  LOC101928697
16  chr15   59952681       60055948  NM_001320674         BNIP2
18  chr18   35108500       35282565     NM_020180         CELF4
19  chr18   35108500       35282565     NR_036202       MIR4318
20   chr3  117726443      118392884     NR_135547  LOC105374060
21   chr3  117726443      118392884     NR_135573  LOC101926968,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3   60312782       60477369  NM_001320899      FHIT,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   87290776       87420435  NM_152336     AGBL1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  102163686      102347197  NM_001031618    SPDYE2
2  chr7  102163686      102347197  NM_001097615   POLR2J3
3  chr7  102163686      102347197  NM_001114403    UPK3BL
4  chr7  102163686      102347197  NM_001277335    RASA4B
5  chr7  102163686      102347197     NM_006989     RASA4
6  chr7  102163686      102347197     NM_032959   POLR2J2
7  chr7  110630290      110957921  NM_001099658     LRRN3
8  chr7  110630290      110957921  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245049171      246652089  NM_001143943        EFCAB2
1    chr1  245049171      246652089  NM_001167740         SMYD3
3    chr1  245049171      246652089     NM_018012        KIF26B
6    chr1  245049171      246652089     NR_111907  LOC101928068
7   chr10   37359911       37613160     NM_052997      ANKRD30A
8   chr10   37359911       37613160     NR_104061     LINC00993
9    chr7   19666400       19805328  NM_001002926       TWISTNB
10   chr7   19666400       19805328     NM_152774       TMEM196
11   chr7   19666400       19805328     NR_036101       MIR3146,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr16   16476792       16634805  NM_001282511       NPIPA8
1    chr2   47047417       47149147  NM_001171506        MCFD2
4    chr2   47047417       47149147  NM_001288953        TTC7A
5    chr2   47047417       47149147     NR_024452    LINC01119
6    chr2   47047417       47149147     NR_034099    LINC01118
7    chr3  197155345      197315613     NM_203314         BDH1
9    chr4   69036485       69188891  NM_001031732       YTHDC1
10   chr4   69036485       69188891     NM_182502    TMPRSS11B
11   chr4   69036485       69188891     NR_015446       FTLP10
12   chr4   69036485       69188891     NR_104048  TMPRSS11BNL
13   chr5   59840674       60048588  NM_001145208      DEPDC1B
14   chr5   59840674       60048588     NM_024930       ELOVL7
15   chr5   59840674       60048588     NR_024617        PART1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   47976708       48489448     NM_000088        COL1A1
1   chr17   47976708       48489448  NM_001166131          EME1
2   chr17   47976708       48489448  NM_001168215        TMEM92
3   chr17   47976708       48489448  NM_001199898          PDK2
6   chr17   47976708       48489448  NM_001257359        SAMD14
7   chr17   47976708       48489448     NM_001934          DLX4
8   chr17   47976708       48489448     NM_002204         ITGA3
10  chr17   47976708       48489448     NM_005220          DLX3
11  chr17   47976708       48489448     NM_016504        MRPL27
12  chr17   47976708       48489448     NM_018509        LRRC59
13  chr17   47976708       48489448     NM_022167         XYLT2
14  chr17   47976708       48489448     NM_032595       PPP1R9B
17  chr17   47976708       48489448     NR_024193         HILS1
18  chr17   47976708       48489448     NR_038230     LOC284080
19  chr17   47976708       48489448     NR_110806  LOC101927230
20  chr17   47976708       48489448     NR_125805    TMEM92-AS1
21  chr17   47976708       48489448     NR_135553          SGCA
22   chr3  189605298      189708233  NM_001134418          P3H2
23   chr3  189605298      189708233  NM_001329148          TP63
27   chr7   11807766       12911257  NM_001112706          SCIN
28   chr7   11807766       12911257  NM_001134232      TMEM106B
29   chr7   11807766       12911257  NM_001135924          VWDE
30   chr7   11807766       12911257     NM_005738         ARL4A
31   chr7   11807766       12911257     NM_015204        THSD7A
34   chr7   11807766       12911257     NR_136261  LOC102725191,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   12758697       12945640  NM_001009611    PRAMEF4
1   chr1   12758697       12945640  NM_001013631   HNRNPCL1
2   chr1   12758697       12945640  NM_001080830   PRAMEF12
3   chr1   12758697       12945640  NM_001103170    AADACL3
4   chr1   12758697       12945640  NM_001146181   HNRNPCL3
5   chr1   12758697       12945640  NM_001146344   PRAMEF11
6   chr1   12758697       12945640  NM_001294139    PRAMEF1
7   chr1   12758697       12945640  NM_001302551   HNRNPCL4
9   chr1   12758697       12945640     NM_023014    PRAMEF2
10  chr1   12758697       12945640     NM_152290   C1orf158
11  chr4  133423164      133594774     NR_126401  LINC01256
12  chr6  162873964      163033373     NM_013988      PARK2
13  chr7  146523122      146716094     NM_014141    CNTNAP2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   31502232       31634090     NM_152325      TEX26
1  chr13   31502232       31634090     NR_038287  TEX26-AS1
3  chr13   40355440       40496742  NM_001145079       COG6
4   chr4  118864813      119047359     NM_004784      NDST3
5   chr7   10421846       12015908     NM_002489     NDUFA4
6   chr7   10421846       12015908     NM_014660      PHF14
7   chr7   10421846       12015908     NM_015204     THSD7A,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   37435669       37629564     NM_052997      ANKRD30A
1  chr10   37435669       37629564     NR_104061     LINC00993
2   chr4  133438381      133590104     NR_126401     LINC01256
3   chr4  169270124      169397962  NM_001012967        DDX60L
5   chr7  124924766      125025227     NR_110188  LOC101928283
6   chr9  102211590      102400252     NR_109802  LOC101928438,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3  131276130      131390748  NM_001289112     CPNE4
3  chr5  167277946      167410846  NM_001080428     TENM2
5  chr9  101925688      102051233     NM_006808    SEC61B
6  chr9  101925688      102051233     NM_033087      ALG2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81446824       81546843  NM_001278495        NUTM2B
1   chr10   81446824       81546843     NR_027512       BEND3P3
2   chr10   81446824       81546843     NR_120611    NUTM2B-AS1
4   chr13   41376128       41615348  NM_001145353          ELF1
5   chr13   41376128       41615348     NM_014252      SLC25A15
7   chr13   41376128       41615348     NR_003365       SUGT1P3
8   chr13   41376128       41615348     NR_030352        MIR621
9   chr13   41376128       41615348     NR_038259       TPTE2P5
10  chr17   21322657       21557561  NM_001113434      C17orf51
11  chr17   21322657       21557561     NM_021012        KCNJ12
12  chr19   23835371       24050493     NM_138286        ZNF681
13  chr19   23835371       24050493     NM_138330        ZNF675
14  chr19   23835371       24050493     NR_003662       RPSAP58
15   chr4   69248852       69411573     NM_001077       UGT2B17
16   chr4   69248852       69411573     NM_014058     TMPRSS11E
17   chr7  124943559      125075360     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr17   48051496       48206748  NM_001199898        PDK2
3   chr17   48051496       48206748  NM_001257359      SAMD14
4   chr17   48051496       48206748     NM_001934        DLX4
5   chr17   48051496       48206748     NM_002204       ITGA3
7   chr17   48051496       48206748     NM_005220        DLX3
9   chr17   48051496       48206748     NR_038230   LOC284080
10  chr19   34528567       34728383     NM_015578      LSM14A
11   chr5   26961876       27443620     NM_016279        CDH9
12   chr7    5645944        5808550     NM_003088       FSCN1
13   chr7    5645944        5808550     NM_207116      RNF216
14   chr7    5645944        5808550     NR_046834  RNF216-IT1
15   chr7    5645944        5808550     NR_106934     MIR6874,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  145107735      145217363  NM_001277444     NBPF9
1   chr1  145107735      145217363  NM_001278267    NBPF20
2   chr1  145107735      145217363     NM_004892    SEC22B
3   chr1  145107735      145217363     NM_203458  NOTCH2NL
4   chr2  242484134      242778119  NM_001164356     THAP4
5   chr2  242484134      242778119  NM_001165031     DTYMK
6   chr2  242484134      242778119  NM_001167601      NEU4
8   chr2  242484134      242778119  NM_001287249    D2HGDH
9   chr2  242484134      242778119  NM_001330161      ING5
12  chr2  242484134      242778119     NM_022134   GAL3ST2
14  chr2  242484134      242778119     NM_032515       BOK
15  chr2  242484134      242778119     NM_178326     ATG4B
16  chr2  242484134      242778119     NR_033346   BOK-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   82930633       83042646  NM_001220488         CDH13
2  chr16   82930633       83042646     NR_110937  LOC101928417
3   chr5  104384476      104549063     NR_000039       RAB9BP1
4   chr8  143426432      143568325  NM_001291931       TSNARE1
5   chr8  143426432      143568325     NM_001702        ADGRB1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  185929616      186078351     NM_031935         HMCN1
1   chr10   81468796       81832425  NM_001278495        NUTM2B
2   chr10   81468796       81832425     NM_003019         SFTPD
3   chr10   81468796       81832425     NR_002724         MBL1P
4   chr10   81468796       81832425     NR_027431   TMEM254-AS1
5   chr10   81468796       81832425     NR_029407     LOC642361
6   chr10   81468796       81832425     NR_033857       BMS1P21
7   chr10   81468796       81832425     NR_120611    NUTM2B-AS1
10  chr16   21392548       21821433  NM_001077180        METTL9
11  chr16   21392548       21821433  NM_001161683          OTOA
13  chr16   21392548       21821433     NM_005849         IGSF6
14  chr16   21392548       21821433     NM_130464        NPIPB3
17  chr16   21392548       21821433     NR_002594      SLC7A5P2
18  chr16   21392548       21821433     NR_003370        RRN3P1
19  chr16   21392548       21821433     NR_024456  LOC100190986
20  chr16   21392548       21821433     NR_027155        SMG1P3
21  chr16   21392548       21821433     NR_045011       SNX29P1
22  chr16   21392548       21821433     NR_049833     MIR3680-2
23  chr16   21392548       21821433     NR_110930  LOC101927814
24   chr3  111636150      111803536  NM_001008273        TAGLN3
25   chr3  111636150      111803536  NM_001134437        PHLDB2
27   chr3  111636150      111803536  NM_001272069        ABHD10
30   chr3  111636150      111803536     NR_026734       TMPRSS7,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr20   14638688       14771588     NM_080676    MACROD2
1   chr5  106798200      107092185     NM_001962      EFNA5
2   chr9   41449230       41565230  NM_001113541  SPATA31A5
3   chr9   41449230       41565230     NM_015667  SPATA31A7
4   chr9   41449230       41565230     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   45641443       45851856  NM_001308133     FANCM
1  chr14   45641443       45851856     NM_018353  MIS18BP1
2   chr5   23824375       24233240     NR_131245   C5orf17
3   chr8     184682         421599  NM_001042415    ZNF596
8   chr8     184682         421599     NM_012173    FBXO25
9   chr8     184682         421599     NR_103537    FAM87A,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  135220913      135620489     NM_000773     CYP2E1
1   chr10  135220913      135620489  NM_001012508       SPRN
2   chr10  135220913      135620489  NM_001080998      FRG2B
3   chr10  135220913      135620489  NM_001143763      SYCE1
6   chr10  135220913      135620489     NM_138384       MTG1
7   chr10  135220913      135620489     NR_002934     SCART1
8   chr10  135220913      135620489     NR_033789     SPRNP1
9   chr14   38186726       38396082  NM_001310135       TTC6
10  chr14   38186726       38396082     NR_135286  LINC00517
11  chr17   48025885       48173952  NM_001199898       PDK2
14  chr17   48025885       48173952     NM_001934       DLX4
15  chr17   48025885       48173952     NM_002204      ITGA3
17  chr17   48025885       48173952     NM_005220       DLX3
19  chr17   48025885       48173952     NR_038230  LOC284080
20  chr17   78170618       78302410     NM_000199       SGSH
21  chr17   78170618       78302410  NM_001166349   SLC26A11
22  chr17   78170618       78302410  NM_001256071     RNF213
23  chr17   78170618       78302410  NM_001257970     CARD14
28   chr3    1333343        1929022  NM_001289081      CNTN6
29   chr4     105064         230079  NM_001039127     ZNF718
32   chr4     105064         230079     NR_027481    ZNF876P
35   chr5   59600885       59751606  NM_001165899      PDE4D,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11    6682529        6860835  NM_001004489    OR2AG1
1  chr11    6682529        6860835  NM_001004490    OR2AG2
2  chr11    6682529        6860835     NM_003696     OR6A2
3  chr11    6682529        6860835     NM_022061    MRPL17
4  chr11    6682529        6860835     NR_003945    GVINP1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr6   38031363       38188018  NM_001172418      BTBD9
1   chr6   38031363       38188018     NM_021943     ZFAND3
3   chr7   18366096       18601624  NM_001204144      HDAC9
12  chr9   38999749       39595216  NM_001085452  SPATA31A1
13  chr9   38999749       39595216     NM_033655    CNTNAP3
14  chr9   38999749       39595216     NR_003528    ZNF658B
15  chr9   38999749       39595216     NR_026803    FAM74A1,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr2   34239633       34528342     NR_126403  LINC01317
1  chr2   34239633       34528342     NR_132381  LINC01318
2  chr4  165948461      166076548  NM_001100389    TMEM192
3  chr4  165948461      166076548     NM_152620     TRIM60
4  chr7   24318321       24675313     NM_000905        NPY
5  chr7   24318321       24675313     NM_016447       MPP6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   81696008       82189216  NM_001244984         SEL1L
1   chr14   81696008       82189216  NM_001256430         STON2
4   chr14   81696008       82189216     NR_109999  LOC100506700
5   chr14   81696008       82189216     NR_110074     LINC01467
6   chr16    6278801        7629159  NM_001142334        RBFOX1
10  chr22   17200761       17399524     NM_175878          XKR3
11  chr22   17200761       17399524     NR_003607       HSFY1P1
12  chr22   17200761       17399524     NR_134584  LOC101929350,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   21798316       21909185  NM_001310148     NPIPB4
1  chr16   21798316       21909185     NR_003370     RRN3P1
2   chr7   29529251       29706115  NM_001293069       CHN2
6   chr7   29529251       29706115  NM_001329997      PRR15
9   chr7   29529251       29706115     NR_024278  LOC646762,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11  134315578      134418503     NR_033852     LOC283177
1   chr2   97152660       97267039  NM_001115016        KANSL3
2   chr2   97152660       97267039  NM_001285485        NEURL3
3   chr2   97152660       97267039  NM_001319085        ARID5A
7   chr2   97152660       97267039     NR_135564  LOC105373496
8   chr2  185152781      185385509     NR_039638     MIR548AE1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   61886491       62090523     NM_006255         PRKCH
1   chr14   61886491       62090523     NR_039985      FLJ22447
2   chr14   61886491       62090523     NR_110416  LOC101927780
4    chr4  169241774      169478691  NM_001012967        DDX60L
5    chr4  169241774      169478691  NM_001166108         PALLD
7    chr7   75830728       76140469  NM_001102594          DTX2
9    chr7   75830728       76140469  NM_001110199         SRRM3
10   chr7   75830728       76140469  NM_001110354           ZP3
11   chr7   75830728       76140469     NM_001540         HSPB1
13   chr7   75830728       76140469     NM_012479         YWHAG
14   chr7   75830728       76140469     NM_030570         UPK3B
15   chr7   75830728       76140469     NM_080744         SSC4D
16   chr7   75830728       76140469     NR_003262        FDPSP2
17   chr9   28673498       29214543  NM_001258282        LINGO2
19   chr9   28673498       29214543     NR_030597        MIR876
20   chr9   28673498       29214543     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12857030       13060321  NM_001009611       PRAMEF4
1    chr1   12857030       13060321  NM_001010889       PRAMEF6
2    chr1   12857030       13060321  NM_001010890       PRAMEF9
3    chr1   12857030       13060321  NM_001012276       PRAMEF8
4    chr1   12857030       13060321  NM_001013631      HNRNPCL1
5    chr1   12857030       13060321  NM_001099850      PRAMEF18
6    chr1   12857030       13060321  NM_001100631      PRAMEF22
7    chr1   12857030       13060321  NM_001146181      HNRNPCL3
8    chr1   12857030       13060321  NM_001146344      PRAMEF11
9    chr1   12857030       13060321  NM_001302551      HNRNPCL4
10   chr1   12857030       13060321  NM_001306072      PRAMEF26
11   chr1   12857030       13060321  NM_001310134      PRAMEF25
12   chr1   12857030       13060321     NM_023014       PRAMEF2
13  chr16   68595341       68978009  NM_001305204         ZFP90
15  chr16   68595341       68978009  NM_001317184          CDH1
16  chr16   68595341       68978009  NM_001317195          CDH3
17  chr16   68595341       68978009     NM_024562        TANGO6
18  chr16   68595341       68978009     NR_106988     MIR7641-2
19  chr20   25363627       25482398  NM_001042472        ABHD12
20  chr20   25363627       25482398  NM_001318226          NINL
22  chr20   25363627       25482398     NM_021067         GINS1
23  chr21   23430739       23533571     NR_038400     LINC00308
24  chr21   23430739       23533571     NR_109959  LOC101927843,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  216220511      216791805  NM_001306129           FN1
3   chr2  216220511      216791805     NR_037195     LINC00607
4   chr2  216220511      216791805     NR_110607  LOC102724849
5   chr2  216220511      216791805     NR_132383     LINC01614
6   chr4    8565369        9432254  NM_001014447           CPZ
7   chr4    8565369        9432254  NM_001040071     LOC650293
8   chr4    8565369        9432254  NM_001242326      USP17L25
16  chr4    8565369        9432254  NM_001256852      USP17L10
17  chr4    8565369        9432254  NM_001256853      USP17L12
19  chr4    8565369        9432254  NM_001256854      USP17L11
22  chr4    8565369        9432254  NM_001256855      USP17L13
23  chr4    8565369        9432254  NM_001256857      USP17L17
24  chr4    8565369        9432254  NM_001256860      USP17L19
25  chr4    8565369        9432254  NM_001256861      USP17L20
26  chr4    8565369        9432254  NM_001256894      USP17L15
27  chr4    8565369        9432254  NM_001306142          HMX1
29  chr4    8565369        9432254     NM_080819         GPR78
30  chr4    8565369        9432254     NR_027279      USP17L6P
32  chr4    8565369        9432254     NR_046416      USP17L9P
33  chr5  146375510      146543489  NM_001271899       PPP2R2B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   79733568       80892009     NM_000137           FAH
1   chr15   79733568       80892009  NM_001100879          ST20
3   chr15   79733568       80892009  NM_001114735        BCL2A1
4   chr15   79733568       80892009  NM_001199758         MTHFS
5   chr15   79733568       80892009  NM_001199760    ST20-MTHFS
6   chr15   79733568       80892009  NM_001242911        ZFAND6
12  chr15   79733568       80892009     NM_014862         ARNT2
13  chr15   79733568       80892009     NM_015206      KIAA1024
14  chr15   79733568       80892009     NR_028330      ST20-AS1
15  chr15   79733568       80892009     NR_033833     LINC00927
18  chr15   79733568       80892009     NR_049837       MIR5572
19  chr15   79733568       80892009     NR_120317     LINC01314
20  chr15   79733568       80892009     NR_120363  LOC101929586
21  chr21   22967735       23238930     NR_038872     LINC00317
22  chr21   22967735       23238930     NR_109958     LINC01425
23   chr5   99665347       99953243     NM_198507       FAM174A
24   chr5   99665347       99953243     NR_027503  LOC100133050,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr1  187170418      187424893  NR_126347  LINC01036
1  chr1  187170418      187424893  NR_132374  LINC01037,    chrom  cnv_start  cnv_terminate       tx_name      gene_name
0  chr19    9351555        9459501  NM_001079935         OR7E24
1  chr19    9351555        9459501  NM_001172650  ZNF559-ZNF177
2  chr19    9351555        9459501  NM_001202406         ZNF559
5  chr19    9351555        9459501     NM_198535         ZNF699
6   chr2   52840408       52946112     NR_039630        MIR4431
7   chr2   78277366       78389902     NR_110287   LOC101927948
8   chr2   78277366       78389902     NR_110288   LOC101927967,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   40716458       40955678  NM_001258419     LRRC4C
1   chr14   47872708       48230462  NM_001113498      MDGA2
2   chr14   47872708       48230462     NR_037503    MIR548Y
3   chr15   28125080       28292235     NM_000275       OCA2
5   chr16   68603277       68841963  NM_001305204      ZFP90
6   chr16   68603277       68841963  NM_001317184       CDH1
7   chr16   68603277       68841963  NM_001317195       CDH3
8   chr16   68603277       68841963     NR_106988  MIR7641-2
9    chr4   80210225       80714210     NM_032693      NAA11
10   chr4   80210225       80714210     NM_033214        GK2
11   chr4   80210225       80714210     NR_038342  LINC01088
12   chr4   80210225       80714210     NR_038826  LINC00989
13   chr8    8136013        8292511  NM_001080826      PRAG1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12818609       13058140  NM_001009611       PRAMEF4
1    chr1   12818609       13058140  NM_001010889       PRAMEF6
2    chr1   12818609       13058140  NM_001010890       PRAMEF9
3    chr1   12818609       13058140  NM_001012276       PRAMEF8
4    chr1   12818609       13058140  NM_001013631      HNRNPCL1
5    chr1   12818609       13058140  NM_001080830      PRAMEF12
6    chr1   12818609       13058140  NM_001099850      PRAMEF18
7    chr1   12818609       13058140  NM_001100631      PRAMEF22
8    chr1   12818609       13058140  NM_001146181      HNRNPCL3
9    chr1   12818609       13058140  NM_001146344      PRAMEF11
10   chr1   12818609       13058140  NM_001294139       PRAMEF1
11   chr1   12818609       13058140  NM_001302551      HNRNPCL4
12   chr1   12818609       13058140  NM_001306072      PRAMEF26
13   chr1   12818609       13058140  NM_001310134      PRAMEF25
15   chr1   12818609       13058140     NM_023014       PRAMEF2
16   chr1   12818609       13058140     NM_152290      C1orf158
17  chr10   81487042       82505923     NM_000429         MAT1A
18  chr10   81487042       82505923  NM_001012973         PLAC9
19  chr10   81487042       82505923  NM_001128309       TSPAN14
20  chr10   81487042       82505923  NM_001145719        SH2D4B
21  chr10   81487042       82505923  NM_001243778       FAM213A
24  chr10   81487042       82505923  NM_001269053         DYDC1
25  chr10   81487042       82505923  NM_001270041         DYDC2
27  chr10   81487042       82505923  NM_001270367       TMEM254
30  chr10   81487042       82505923  NM_001278407        ANXA11
33  chr10   81487042       82505923     NM_003019         SFTPD
36  chr10   81487042       82505923     NR_002724         MBL1P
37  chr10   81487042       82505923     NR_027431   TMEM254-AS1
38  chr10   81487042       82505923     NR_029407     LOC642361
39  chr10   81487042       82505923     NR_033857       BMS1P21
40  chr10   81487042       82505923     NR_038464     LINC00857
41  chr10   81487042       82505923     NR_120611    NUTM2B-AS1
44  chr10   81487042       82505923     NR_120661  LOC101929574
45  chr10   81487042       82505923     NR_120662  LOC102723703
46  chr10   81487042       82505923     NR_136612  LOC100130698,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89673862       89958284  NM_001136486        TRIM64
1   chr11   89673862       89958284  NM_001143975        UBTFL1
2   chr11   89673862       89958284  NM_001144073       CHORDC1
3   chr11   89673862       89958284  NM_001195234       TRIM49C
4   chr11   89673862       89958284     NM_005467       NAALAD2
5   chr11   89673862       89958284     NR_028346      TRIM53AP
6    chr2   51220822       52614131  NM_001330079         NRXN1
9    chr2   51220822       52614131     NR_135237     LOC730100
10   chr2   51220822       52614131     NR_135239  LOC105374596,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2   78205732       78456468  NR_110287  LOC101927948
1  chr2   78205732       78456468  NR_110288  LOC101927967
2  chr2  202168300      202295311  NM_015049         TRAK2
3  chr2  202168300      202295311  NR_110620      ALS2CR12
4  chr4   72985904       73330540  NM_004885        NPFFR2
5  chr4   72985904       73330540  NM_014243       ADAMTS3
7  chr6  136879086      136989131  NM_005923        MAP3K5
8  chr6  136879086      136989131  NR_125858  LOC101928461,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr21   22307086       22414501  NM_004540     NCAM2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   12829714       12969386  NM_001009611    PRAMEF4
1   chr1   12829714       12969386  NM_001013631   HNRNPCL1
2   chr1   12829714       12969386  NM_001080830   PRAMEF12
3   chr1   12829714       12969386  NM_001146181   HNRNPCL3
4   chr1   12829714       12969386  NM_001146344   PRAMEF11
5   chr1   12829714       12969386  NM_001294139    PRAMEF1
6   chr1   12829714       12969386  NM_001302551   HNRNPCL4
8   chr1   12829714       12969386     NM_023014    PRAMEF2
9   chr6  129214333      129595139  NM_001079823      LAMA2
10  chr9   39106911       39416759  NM_001085452  SPATA31A1
11  chr9   39106911       39416759     NM_033655    CNTNAP3
12  chr9   39106911       39416759     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr15   28165505       28347391     NM_000275           OCA2
2   chr16   29463488       29831878  NM_001014999          SLX1A
3   chr16   29463488       29831878  NM_001017390        SULT1A4
4   chr16   29463488       29831878  NM_001030288            SPN
5   chr16   29463488       29831878  NM_001031827          BOLA2
6   chr16   29463488       29831878  NM_001256269          KIF22
8   chr16   29463488       29831878  NM_001256443          PRRT2
9   chr16   29463488       29831878  NM_001276275            MAZ
10  chr16   29463488       29831878  NM_001318249           QPRT
11  chr16   29463488       29831878  NM_001320622   BOLA2-SMG1P6
15  chr16   29463488       29831878     NM_005115            MVP
16  chr16   29463488       29831878     NM_024516          PAGR1
17  chr16   29463488       29831878     NM_152338           ZG16
18  chr16   29463488       29831878     NM_175900       C16orf54
19  chr16   29463488       29831878     NR_002556      LOC388242
20  chr16   29463488       29831878     NR_037608  SLX1A-SULT1A3
21  chr16   29463488       29831878     NR_049833      MIR3680-2
23  chr16   29463488       29831878     NR_135305         SMG1P2
25  chr19    1086547        1259530     NM_000455          STK11
26  chr19    1086547        1259530  NM_001001975          ATP5D
27  chr19    1086547        1259530  NM_001039848           GPX4
28  chr19    1086547        1259530  NM_001100122          SBNO2
29  chr19    1086547        1259530  NM_001258328       ARHGAP45
32  chr19    1086547        1259530  NM_001316323         POLR2E
37  chr19    1086547        1259530     NM_152769          CBARP
38  chr19    1086547        1259530     NM_177401           MIDN
39   chr7   69041603       69381249  NM_001127231          AUTS2
41   chr7   69041603       69381249     NR_108105   LOC100507468,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  215765637      215901972  NM_001319294     KCTD3
1    chr1  215765637      215901972     NM_206933     USH2A
2   chr20   14693154       14850425     NM_080676   MACROD2
3    chr3  160035690      160245155  NM_001190241     IFT80
5    chr3  160035690      160245155  NM_001288753      SMC4
6    chr3  160035690      160245155     NM_002268     KPNA4
8    chr3  160035690      160245155     NM_173084    TRIM59
9    chr3  160035690      160245155     NR_003001   SCARNA7
10   chr3  160035690      160245155     NR_029525   MIR16-2
11   chr3  160035690      160245155     NR_029663    MIR15B,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12775041       12946651  NM_001009611      PRAMEF4
1    chr1   12775041       12946651  NM_001013631     HNRNPCL1
2    chr1   12775041       12946651  NM_001080830     PRAMEF12
3    chr1   12775041       12946651  NM_001103170      AADACL3
4    chr1   12775041       12946651  NM_001146181     HNRNPCL3
5    chr1   12775041       12946651  NM_001146344     PRAMEF11
6    chr1   12775041       12946651  NM_001294139      PRAMEF1
7    chr1   12775041       12946651  NM_001302551     HNRNPCL4
9    chr1   12775041       12946651     NM_023014      PRAMEF2
10   chr1   12775041       12946651     NM_152290     C1orf158
11  chr17   21433733       21739881  NM_001113434     C17orf51
12   chr3  155581234      156098496  NM_001308217       KCNAB1
15   chr3  155581234      156098496     NM_003875         GMPS
18   chr3  155581234      156098496     NR_046617   KCNAB1-AS2
19   chr4   68968897       69112364     NM_182502    TMPRSS11B
20   chr4   68968897       69112364     NM_207407    TMPRSS11F
21   chr4   68968897       69112364     NR_015446       FTLP10
22   chr4   68968897       69112364     NR_104048  TMPRSS11BNL,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21551871       21668034  NM_001077180        METTL9
2   chr16   21551871       21668034     NM_005849         IGSF6
3   chr16   21551871       21668034     NR_110930  LOC101927814
4    chr3   60425180       61161937  NM_001320899          FHIT
5    chr3   60425180       61161937     NR_128708      MIR548BB
6    chr7    2709048        2951837  NM_001282440         GNA12
8    chr7    2709048        2951837  NM_001284355          AMZ1
11   chr7    2709048        2951837  NM_001324281        CARD11
13   chr9   41919668       42050150     NR_003670        FGF7P3
14   chr9   41919668       42050150     NR_015363         GLIDR
17   chr9   41919668       42050150     NR_126048  LOC102724238
18   chr9   41919668       42050150     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67270812       67503230     NM_000695       ALDH3B2
1   chr11   67270812       67503230     NM_000852         GSTP1
3   chr11   67270812       67503230  NM_001166102        NDUFV1
4   chr11   67270812       67503230  NM_001243750         NUDT8
5   chr11   67270812       67503230  NM_001318496         CABP2
6   chr11   67270812       67503230     NM_004910       PITPNM1
7   chr11   67270812       67503230     NM_005851       CDK2AP2
8   chr11   67270812       67503230     NM_005995         TBX10
9   chr11   67270812       67503230     NM_080658          ACY3
11  chr11   67270812       67503230     NR_033791        DOC2GP
13  chr11   67270812       67503230     NR_130935      C11orf72
14  chr16    6460421        6748138  NM_001308117        RBFOX1
16   chr3    3848363        4072417  NM_001324189         LRRN1
17   chr9   67120060       67711215     NR_002817        AQP7P1
18   chr9   67120060       67711215     NR_136300  LOC102724580,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr5   99637251       99750174  NR_027503  LOC100133050
1  chr9   14885188       14988737  NM_144966         FREM1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr19   21415128       21515150  NM_001297560    ZNF708
3   chr5   19659606       19793580  NM_001291956     CDH18,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2   50774589       50958431  NM_001330082         NRXN1
1    chr2   50774589       50958431     NR_130470       MIR8485
2   chr21   29406367       30962608     NM_000830         GRIK1
3   chr21   29406367       30962608     NM_001186         BACH1
4   chr21   29406367       30962608  NM_001286619      MAP3K7CL
9   chr21   29406367       30962608  NM_001320724        RWDD2B
10  chr21   29406367       30962608  NM_001320766          LTN1
11  chr21   29406367       30962608     NM_006447         USP16
12  chr21   29406367       30962608     NM_006585          CCT8
13  chr21   29406367       30962608     NM_013240        N6AMT1
19  chr21   29406367       30962608     NR_026552     LINC00161
20  chr21   29406367       30962608     NR_027072     LINC00189
22  chr21   29406367       30962608     NR_046564     BACH1-IT2
24  chr21   29406367       30962608     NR_126010     LOC284825
26  chr21   29406367       30962608     NR_126012  LOC101927973
27   chr4  169241670      169971866  NM_001012967        DDX60L
28   chr4  169241670      169971866  NM_001166108         PALLD
32   chr4  169241670      169971866     NM_032783          CBR4
33   chr9   41926921       42114919     NR_003670        FGF7P3
34   chr9   41926921       42114919     NR_015363         GLIDR
37   chr9   41926921       42114919     NR_126048  LOC102724238
38   chr9   41926921       42114919     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   21056135       21300522  NM_001277303     POTEB2
1  chr15   21056135       21300522     NM_207355     POTEB3
2  chr15   21056135       21300522     NR_028506      NF1P2
3  chr15   21056135       21300522     NR_040094  LINC01193
4  chr15   21056135       21300522     NR_049895  MIR5701-2
6   chr7   16511530       16656734  NM_001195280     LRRC72
7   chr7   16511530       16656734     NM_020319     ANKMY2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    9597024       10395918     NR_120636  LOC101928298
1    chr2  186259337      186660820     NM_173651         FSIP2
2    chr2  186259337      186660820     NR_110214  LOC101927196
5    chr2  186259337      186660820     NR_144453     FSIP2-AS1
7    chr8   19722761       20476114     NM_000237           LPL
8    chr8   19722761       20476114  NM_001135691       SLC18A1
9    chr8   19722761       20476114     NM_001693      ATP6V1B2
10   chr8   19722761       20476114     NM_021020         LZTS1
11   chr8   19722761       20476114     NR_047509     LZTS1-AS1
12   chr9     495140        2769280  NM_001130865         DMRT2
13   chr9     495140        2769280  NM_001256876         KANK1
14   chr9     495140        2769280  NM_001289396       SMARCA2
18   chr9     495140        2769280     NM_003383         VLDLR
21   chr9     495140        2769280     NM_021240         DMRT3
22   chr9     495140        2769280     NM_021951         DMRT1
23   chr9     495140        2769280     NM_133497         KCNV2
27   chr9     495140        2769280     NR_015375     VLDLR-AS1
28   chr9     495140        2769280     NR_110643     LINC01230
29   chr9   44265575       44495524     NR_121564  LOC101927827
30   chr9   44265575       44495524     NR_126050  LOC103908605,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   11495170       11611841  NM_001080491    USP6NL
3  chr17   21295627       22755078  NM_001113434  C17orf51
4  chr17   21295627       22755078  NM_001190452  MTRNR2L1
5  chr17   21295627       22755078  NM_001194958    KCNJ18
6  chr17   21295627       22755078     NM_021012    KCNJ12
7  chr17   21295627       22755078     NR_027084  FLJ36000
8  chr17   21295627       22755078     NR_028336   FAM27E5,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr4  169246498      170103133  NM_001012967    DDX60L
1  chr4  169246498      170103133  NM_001166108     PALLD
5  chr4  169246498      170103133     NM_020870    SH3RF1
6  chr4  169246498      170103133     NM_032783      CBR4, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   42643367       43297970  NM_001130447         HAUS2
1   chr15   42643367       43297970  NM_001284306        ZNF106
4   chr15   42643367       43297970     NM_003825        SNAP23
5   chr15   42643367       43297970     NM_020759        STARD9
6   chr15   42643367       43297970     NM_138477         CDAN1
7   chr15   42643367       43297970     NM_153260        LRRC57
8   chr15   42643367       43297970     NM_173087         CAPN3
11  chr15   42643367       43297970     NM_173500         TTBK2
12  chr15   42643367       43297970     NM_174916          UBR1
13  chr15   42643367       43297970     NM_198141          GANC
14  chr20   14705810       15002315     NM_080676       MACROD2
15  chr20   14705810       15002315     NR_037841   MACROD2-AS1
17   chr9   66551719       66934387     NR_121570  LOC101928381
18   chr9   66551719       66934387     NR_122076     LOC403323
20   chr9   66551719       66934387     NR_126047     LOC728673,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr4   11842487       12269060     NR_125910  LOC101929019
1  chr4   71355998       71477678  NM_001286731          AMTN
2  chr4   71355998       71477678     NM_016519          AMBN,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr2   62162129       62264875  NM_001321781     COMMD1
2   chr5   66196569       66348420  NM_001164664      MAST4
7   chr5   66196569       66348420     NR_111908  MAST4-AS1
8   chr7   64126755       64265641  NM_001160183     ZNF138
9   chr7   64126755       64265641  NM_001282360     ZNF107
12  chr7   64126755       64265641     NR_106898    MIR6839,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   45641749       45742690  NM_001308133     FANCM
1  chr14   45641749       45742690     NM_018353  MIS18BP1
2   chr6   80982991       81088427     NM_000056    BCKDHB
3   chr6  131044735      131512370  NM_001135554   EPB41L2
4   chr6  131044735      131512370  NM_001195597     SMLR1
6   chr6  131044735      131512370     NM_016377     AKAP7
7   chr7  110673383      110961100  NM_001099658     LRRN3
8   chr7  110673383      110961100  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr16   21718519       21847702  NM_001161683      OTOA
1   chr16   21718519       21847702  NM_001310148    NPIPB4
4   chr16   21718519       21847702     NR_003370    RRN3P1
5    chr4    8957642       10417093     NM_000798      DRD5
6    chr4    8957642       10417093  NM_001001290    SLC2A9
7    chr4    8957642       10417093  NM_001040448   DEFB131
8    chr4    8957642       10417093  NM_001242326  USP17L25
16   chr4    8957642       10417093  NM_001256852  USP17L10
17   chr4    8957642       10417093  NM_001256853  USP17L12
19   chr4    8957642       10417093  NM_001256854  USP17L11
22   chr4    8957642       10417093  NM_001256855  USP17L13
23   chr4    8957642       10417093  NM_001256857  USP17L17
24   chr4    8957642       10417093  NM_001256860  USP17L19
25   chr4    8957642       10417093  NM_001256861  USP17L20
26   chr4    8957642       10417093  NM_001256894  USP17L15
27   chr4    8957642       10417093     NM_005112      WDR1
29   chr4    8957642       10417093     NR_027279  USP17L6P
30   chr4    8957642       10417093     NR_031688  MIR548I2
31   chr4    8957642       10417093     NR_036090   MIR3138
32   chr4    8957642       10417093     NR_046416  USP17L9P
33   chr7    3336384        3460326     NM_152744      SDK1
34   chr9   26486371       26850000  NM_001167575     CAAP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   81665645       81803409  NM_001256430         STON2
1   chr14   81665645       81803409  NM_001278940        GTF2A1
4   chr14   81665645       81803409     NR_003021       SNORA79
5   chr14   81665645       81803409     NR_135252  LOC101928504
6   chr15   20712385       20826487  NM_001145004      GOLGA6L6
7   chr15   20712385       20826487     NR_027411      GOLGA8CP
8    chr4  169192977      169707518  NM_001012967        DDX60L
9    chr4  169192977      169707518  NM_001166108         PALLD
12   chr4  169192977      169707518     NM_017631         DDX60,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16    6755109        7034984  NM_001142334    RBFOX1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   59984607       60422665     NM_012182      FOXB1
1   chr2   97337222       97440382  NM_001293083     FER1L5
2   chr2   97337222       97440382  NM_001322354     LMAN2L
3   chr2   97337222       97440382     NM_020184      CNNM4
5   chr4   69261447       69778709     NM_001075    UGT2B10
6   chr4   69261447       69778709     NM_001076    UGT2B15
7   chr4   69261447       69778709     NM_001077    UGT2B17
8   chr4   69261447       69778709     NM_014058  TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   47837432       47940592  NM_001113498         MDGA2
1   chr21   29460619       29571760     NR_126010     LOC284825
3   chr21   29460619       29571760     NR_126012  LOC101927973
4    chr4     133490         481353  NM_001039127        ZNF718
5    chr4     133490         481353  NM_001137608        ZNF732
8    chr4     133490         481353     NM_003441        ZNF141
9    chr4     133490         481353     NM_133474        ZNF721
10   chr4     133490         481353     NR_002451       ABCA11P
11   chr4     133490         481353     NR_027481       ZNF876P
12   chr4     133490         481353     NR_030297        MIR571
15   chr7  110603252      111054617  NM_001099658         LRRN3
16   chr7  110603252      111054617  NM_001244606        IMMP2L
18   chr8   58212511       58435278     NR_125818  LOC101929488,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   41646091       41785019  NM_001243142    NUSAP1
1  chr15   41646091       41785019     NM_015138      RTF1
2  chr15   41646091       41785019     NR_045620   NDUFAF1
3   chr2   50785602       51235872  NM_001330079     NRXN1
6   chr2   50785602       51235872     NR_130470   MIR8485,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67642348       67751512  NM_001127384        CTNNA3
2   chr10   68606389       68945873  NM_001127384        CTNNA3
5   chr10   68606389       68945873     NM_178011        LRRTM3
7   chr10   68606389       68945873     NR_111911  LOC101928961
8    chr2  133535885      133641651     NM_207363        NCKAP5
9    chr2  236660805      236786771  NM_001244888         AGAP1
11   chr4   94162917       94409808     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   85627277       85731563  NM_001079910     LRRIQ1
1   chr12   85627277       85731563     NM_006982       ALX1
2   chr15   20262893       21446708  NM_001145004   GOLGA6L6
3   chr15   20262893       21446708  NM_001277303     POTEB2
4   chr15   20262893       21446708     NM_207355     POTEB3
5   chr15   20262893       21446708     NR_027411   GOLGA8CP
6   chr15   20262893       21446708     NR_027992     NBEAP1
7   chr15   20262893       21446708     NR_028506      NF1P2
8   chr15   20262893       21446708     NR_036062  MIR3118-2
9   chr15   20262893       21446708     NR_036432    HERC2P3
10  chr15   20262893       21446708     NR_038836    CHEK2P2
11  chr15   20262893       21446708     NR_040094  LINC01193
12  chr15   20262893       21446708     NR_049895  MIR5701-2
14   chr3  118711692      118865058  NM_001015887     IGSF11
16   chr3  118711692      118865058     NM_152539    C3orf30,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr4   69237590       69349106     NM_014058  TMPRSS11E
1  chr5  114123181      114467635  NM_001300752     TRIM36,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3    1165774        1523528  NM_001289081     CNTN6,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr13   54701957       54856653     NR_108062     LINC00458
2  chr17      31922         139296  NM_001190411        RPH3AL
3  chr17      31922         139296     NR_104420  LOC100506371
4   chr7   64199287       64339752  NM_001160183        ZNF138,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   63453584       63896180  NM_001039469         MARK2
1   chr11   63453584       63896180  NM_001144936      C11orf95
2   chr11   63453584       63896180  NM_001265591          RTN3
3   chr11   63453584       63896180  NM_001300800         NAA40
4   chr11   63453584       63896180     NM_004074         COX8A
5   chr11   63453584       63896180     NM_013280         FLRT1
6   chr11   63453584       63896180     NM_014067       MACROD1
9   chr11   63453584       63896180     NM_138471      C11orf84
10  chr11   63453584       63896180     NM_173587         RCOR2
11  chr11   63453584       63896180     NR_003089         OTUB1
12  chr18   63218375       63721428  NM_001317214          CDH7
15   chr4  189248743      189426698     NR_033869     LINC01060
16   chr7    6925513        7207916     NR_034022  LOC100131257
17   chr7    6925513        7207916     NR_037454       MIR3683
18   chr8    6992955        7443225  NM_001040705      DEFB107B
19   chr8    6992955        7443225  NM_001081551      DEFB103A
20   chr8    6992955        7443225  NM_001164457       ZNF705G
21   chr8    6992955        7443225  NM_001205266        DEFB4B
22   chr8    6992955        7443225  NM_001256873       USP17L1
23   chr8    6992955        7443225  NM_001256874       USP17L4
24   chr8    6992955        7443225  NM_001282478       PRR23D2
25   chr8    6992955        7443225  NM_001282479       PRR23D1
26   chr8    6992955        7443225     NM_058200       SPAG11B
30   chr8    6992955        7443225     NM_080389      DEFB104A
31   chr8    6992955        7443225     NM_152250      DEFB105A
32   chr8    6992955        7443225     NM_152251      DEFB106A
33   chr8    6992955        7443225     NR_003668    DEFB109P1B
34   chr8    6992955        7443225     NR_027000     LINC00965
37   chr8    6992955        7443225     NR_027423        FAM66B
38   chr8    6992955        7443225     NR_046343      FAM90A7P,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  243516581      243847915  NM_001206729       AKT3
2    chr1  243516581      243847915     NM_006642    SDCCAG8
4   chr11   25102145       25486981  NM_001009909      LUZP2
5   chr15   28566276       28842155     NM_004667      HERC2
6   chr15   28566276       28842155     NR_033351    GOLGA8F
8   chr15   28566276       28842155     NR_033353    GOLGA8G
10  chr15   28566276       28842155     NR_039734  MIR4509-3
12  chr16   26795251       27478022     NM_000418       IL4R
13  chr16   26795251       27478022  NM_001145348       KDM8
14  chr16   26795251       27478022  NM_001145545   C16orf82
15  chr16   26795251       27478022     NM_001520     GTF3C1
16  chr16   26795251       27478022     NM_021798      IL21R
18  chr16   26795251       27478022     NM_145080     NSMCE1
20  chr16   26795251       27478022     NR_037158  IL21R-AS1
21  chr16   26795251       27478022     NR_037184   FLJ21408,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  186013355      186299148  NM_001303232          PRG4
1    chr1  186013355      186299148     NM_003292           TPR
2    chr1  186013355      186299148     NM_031935         HMCN1
3   chr11   40715655       40847447  NM_001258419        LRRC4C
4   chr15   28668310       28814874     NR_033351       GOLGA8F
5   chr15   28668310       28814874     NR_033353       GOLGA8G
6   chr15   28668310       28814874     NR_039734     MIR4509-3
8   chr15   36198139       36318625     NR_039735       MIR4510
9    chr7   64031363       64170715  NM_001282360        ZNF107
10   chr7   64031363       64170715     NR_033245     LOC641746
11   chr7   64031363       64170715     NR_077227  LOC100128885
13   chr7   64031363       64170715     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr15   28622063       28790349  NR_033351    GOLGA8F
2  chr15   28622063       28790349  NR_033353    GOLGA8G
4  chr15   28622063       28790349  NR_039734  MIR4509-3
6   chr5   17719316       18122980  NR_134286  LOC646241,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr4   69186499       69649986  NM_001031732        YTHDC1
1  chr4   69186499       69649986     NM_001076       UGT2B15
2  chr4   69186499       69649986     NM_001077       UGT2B17
3  chr4   69186499       69649986     NM_014058     TMPRSS11E
4  chr8   58153190       58315796     NR_026772     LINC00588
5  chr8   58153190       58315796     NR_038874     LOC286177
6  chr8   58153190       58315796     NR_125818  LOC101929488,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   83577567       83908207  NM_001142699      DLG2
4  chr21   22378849       22497408     NM_004540     NCAM2
5   chr3  131349426      131456222  NM_001289112     CPNE4
8   chr3  197154963      197302362     NM_203314      BDH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   54227494       54732692     NM_000242          MBL2
1   chr10   54227494       54732692     NR_120641     LINC01468
2   chr16   72541504       73136971  NM_001164766         ZFHX3
4   chr16   72541504       73136971     NR_027756        HCCAT5
5   chr16   72541504       73136971     NR_126330     LINC01572
6    chr7   93276945       93625256  NM_001317739          BET1
7    chr7   93276945       93625256     NM_004126         GNG11
8    chr7   93276945       93625256     NM_006528         TFPI2
9    chr7   93276945       93625256     NM_021955         GNGT1
10   chr7   93276945       93625256     NR_039796       MIR4652
12   chr7   93276945       93625256     NR_134235  LOC105375401,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   51725298       52041224     NR_135237     LOC730100
1   chr4   69289469       69611360     NM_001076       UGT2B15
2   chr4   69289469       69611360     NM_001077       UGT2B17
3   chr4   69289469       69611360     NM_014058     TMPRSS11E
4   chr7   64067723       65410832  NM_001007253        ERV3-1
5   chr7   64067723       65410832  NM_001160183        ZNF138
6   chr7   64067723       65410832  NM_001282360        ZNF107
7   chr7   64067723       65410832  NM_001287532         ZNF92
8   chr7   64067723       65410832     NM_015852        ZNF117
9   chr7   64067723       65410832     NM_021148        ZNF273
10  chr7   64067723       65410832     NM_173517      VKORC1L1
11  chr7   64067723       65410832     NR_002961       SNORA22
12  chr7   64067723       65410832     NR_003110        CCT6P1
13  chr7   64067723       65410832     NR_027392       INTS4P2
14  chr7   64067723       65410832     NR_033416        CCT6P3
15  chr7   64067723       65410832     NR_038378     LOC441242
17  chr7   64067723       65410832     NR_077227  LOC100128885
20  chr7   64067723       65410832     NR_106898       MIR6839
21  chr7   64083289       64366782  NM_001160183        ZNF138
22  chr7   64083289       64366782  NM_001282360        ZNF107
23  chr7   64083289       64366782     NM_021148        ZNF273
26  chr7   64083289       64366782     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145261783      145508446  NM_001039888      ANKRD34A
1    chr1  145261783      145508446  NM_001277444         NBPF9
2    chr1  145261783      145508446  NM_001278267        NBPF20
3    chr1  145261783      145508446  NM_001302371        NBPF10
4    chr1  145261783      145508446  NM_001313972         TXNIP
5    chr1  145261783      145508446     NM_005105         RBM8A
7    chr1  145261783      145508446     NM_032305       POLR3GL
8    chr1  145261783      145508446     NM_145277          HFE2
9    chr1  145261783      145508446     NM_153713         LIX1L
10   chr1  145261783      145508446     NM_203458      NOTCH2NL
11   chr1  145261783      145508446     NR_104217       NBPF25P
12   chr1  145261783      145508446     NR_125967  LOC101928979
13  chr12   72559180       72808791     NM_013381         TRHDE
14  chr12   72559180       72808791     NR_026836     TRHDE-AS1
16   chr2   51110443       51223895  NM_001330079         NRXN1
19   chr2  110202545      110307518  NM_001099289        SH3RF3
20   chr2  110202545      110307518  NM_001321504        SEPT10
22   chr3  162929041      163039086     NR_033945     LINC01192
23   chr4     535353         825229     NM_000283         PDE6B
25   chr4     535353         825229  NM_001294341         MFSD7
26   chr4     535353         825229  NM_001317836         PCGF3
27   chr4     535353         825229     NM_002477          MYL5
28   chr4     535353         825229     NM_006651         CPLX1
29   chr4     535353         825229     NM_007100         ATP5I
30   chr4     535353         825229     NR_036511  LOC100129917,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11     674989         836643     NM_001004      RPLP2
1   chr11     674989         836643  NM_001039490      CD151
2   chr11     674989         836643  NM_001042463     TMEM80
3   chr11     674989         836643  NM_001191060   SLC25A22
6   chr11     674989         836643  NM_001286606    CRACR2B
7   chr11     674989         836643  NM_001293167      PANO1
8   chr11     674989         836643  NM_001318824      PDDC1
9   chr11     674989         836643     NM_006755     TALDO1
10  chr11     674989         836643     NM_016564      CEND1
11  chr11     674989         836643     NM_020376     PNPLA2
12  chr11     674989         836643     NM_021008      DEAF1
13  chr11     674989         836643     NM_022772     EPS8L2
15  chr11     674989         836643     NM_145886      PIDD1
16  chr11     674989         836643     NR_002585    SNORA52
17  chr11     674989         836643     NR_126342  LOC171391
18  chr11    6738418        7051105  NM_001004460     OR10A2
19  chr11    6738418        7051105  NM_001004489     OR2AG1
20  chr11    6738418        7051105  NM_001004490     OR2AG2
21  chr11    6738418        7051105  NM_001004684      OR2D3
22  chr11    6738418        7051105     NM_003696      OR6A2
23  chr11    6738418        7051105     NM_003700      OR2D2
24  chr11    6738418        7051105     NM_013249     ZNF214
25  chr11    6738418        7051105     NM_013250     ZNF215
26  chr11    6738418        7051105     NM_176822     NLRP14
27  chr11    6738418        7051105     NM_178168     OR10A5
28  chr11    6738418        7051105     NM_207186     OR10A4
29  chr11    6738418        7051105     NR_003945     GVINP1
30  chr14   40698389       41484657     NR_109757  LOC644919
32  chr16   68601634       68720337  NM_001305204      ZFP90
33  chr16   68601634       68720337  NM_001317195       CDH3
34   chr9   39078247       39556830  NM_001085452  SPATA31A1
35   chr9   39078247       39556830     NM_033655    CNTNAP3
36   chr9   39078247       39556830     NR_003528    ZNF658B
37   chr9   39078247       39556830     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143147164      143270288     NR_110761  LOC102723769
1  chr16    6703420        7027956  NM_001142334        RBFOX1
4   chr3   60291013       60414137  NM_001320899          FHIT
5   chr4   56419768       56675168     NM_006681           NMU
6   chr4   56419768       56675168     NM_152401         PDCL2
8   chr9   30364186       31142107     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12816371       12963662  NM_001009611       PRAMEF4
1    chr1   12816371       12963662  NM_001013631      HNRNPCL1
2    chr1   12816371       12963662  NM_001080830      PRAMEF12
3    chr1   12816371       12963662  NM_001146181      HNRNPCL3
4    chr1   12816371       12963662  NM_001146344      PRAMEF11
5    chr1   12816371       12963662  NM_001294139       PRAMEF1
6    chr1   12816371       12963662  NM_001302551      HNRNPCL4
8    chr1   12816371       12963662     NM_023014       PRAMEF2
9    chr1   12816371       12963662     NM_152290      C1orf158
10  chr13   63133099       64291540     NR_047011     LINC00395
11  chr13   63133099       64291540     NR_047029     LINC00448
14  chr13   63133099       64291540     NR_126409     LINC00376
15  chr19   24289150       24755410  NM_001278661        ZNF254
18  chr19   24289150       24755410     NR_003603      HAVCR1P1
19   chr2   97327097       97498707  NM_001293083        FER1L5
20   chr2   97327097       97498707  NM_001322354        LMAN2L
21   chr2   97327097       97498707     NM_017623         CNNM3
22   chr2   97327097       97498707     NM_020184         CNNM4
24   chr2   97327097       97498707     NR_036074       MIR3127
25   chr9   41449705       42115905  NM_001113541     SPATA31A5
26   chr9   41449705       42115905     NM_015667     SPATA31A7
27   chr9   41449705       42115905     NR_003528       ZNF658B
28   chr9   41449705       42115905     NR_003670        FGF7P3
29   chr9   41449705       42115905     NR_015363         GLIDR
30   chr9   41449705       42115905     NR_026803       FAM74A1
33   chr9   41449705       42115905     NR_126048  LOC102724238
34   chr9   41449705       42115905     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr13   25263192       25444027  NM_001184993     RNF17
1   chr13   25263192       25444027  NM_001185085    ATP12A
2    chr4     496772         739322     NM_000283     PDE6B
4    chr4     496772         739322  NM_001289053      PIGG
5    chr4     496772         739322  NM_001294341     MFSD7
6    chr4     496772         739322  NM_001317836     PCGF3
7    chr4     496772         739322     NM_002477      MYL5
8    chr4     496772         739322     NM_007100     ATP5I
11   chr7  110692034      111020577  NM_001099658     LRRN3
12   chr7  110692034      111020577  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   58752270       59058458  NM_001286220       GOT2
1  chr17    5588534        6067117     NM_015253      WSCD1
2  chr17    5588534        6067117     NR_040000  LOC339166
3   chr4   71383947       71517141  NM_001286731       AMTN
4   chr4   71383947       71517141     NM_016519       AMBN
5   chr4   71383947       71517141     NM_031889       ENAM,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12776163       12877866  NM_001080830      PRAMEF12
1    chr1   12776163       12877866  NM_001103170       AADACL3
2    chr1   12776163       12877866  NM_001294139       PRAMEF1
4    chr1   12776163       12877866     NM_152290      C1orf158
5   chr11   31411985       31586673  NM_001304274        IMMP1L
6   chr11   31411985       31586673     NM_019040          ELP4
7   chr11   31411985       31586673     NM_181706       DNAJC24
8   chr14   47822344       48020698  NM_001113498         MDGA2
9   chr18     619071         817321  NM_001012716        TYMSOS
10  chr18     619071         817321     NM_001071          TYMS
11  chr18     619071         817321  NM_001126123        ENOSF1
12  chr18     619071         817321  NM_001289036         CLUL1
16  chr18     619071         817321     NM_005433          YES1
19   chr2     940208        1114932     NM_018968         SNTG2
20   chr2     940208        1114932     NR_136151  LOC101060391
21  chr21   22632808       22887777     NM_004540         NCAM2
22   chr8  124970526      125127825  NM_001039112        FER1L6
23   chr8  124970526      125127825     NR_040044    FER1L6-AS1
24   chr8  124970526      125127825     NR_103547    FER1L6-AS2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr17   21443216       21653629  NM_001113434  C17orf51
1   chr6  162808162      163024616     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr2  242456194      242590027  NM_001164356        THAP4
2    chr2  242456194      242590027     NM_032515          BOK
3    chr2  242456194      242590027     NM_178326        ATG4B
4    chr2  242456194      242590027     NR_033346      BOK-AS1
5   chr20   14695462       15070692     NM_080676      MACROD2
6   chr20   14695462       15070692     NR_037841  MACROD2-AS1
8   chr21   22637485       22910898     NM_004540        NCAM2
9    chr3   41286790       42359049     NM_000729          CCK
10   chr3   41286790       42359049  NM_001042646        TRAK1
15   chr3   41286790       42359049  NM_001322500         ULK4
18   chr4  165883488      166238065  NM_001012414       TRIM61
19   chr4  165883488      166238065  NM_001100389      TMEM192
20   chr4  165883488      166238065  NM_001161522        KLHL2
22   chr4  165883488      166238065     NM_152620       TRIM60
23   chr4  165883488      166238065     NR_026575         GK3P
24   chr6  130114069      130458523  NM_001007102      L3MBTL3
25   chr6  130114069      130458523  NM_001010876      TMEM244
28   chr7   77731213       77841598     NM_012301        MAGI2,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr7  108401725      108617721  NM_001024607    C7orf66
1  chr8   58038321       58146065     NR_038235  LINC01606,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   45634961       46098130  NM_001308133     FANCM
2  chr14   45634961       46098130     NM_018353  MIS18BP1
3   chr2   50750648       51096822  NM_001330082     NRXN1
4   chr2   50750648       51096822     NR_130470   MIR8485,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   47763031       47900418  NM_001113498     MDGA2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr4    9133637        9537919  NM_001040448   DEFB131
1   chr4    9133637        9537919  NM_001242326  USP17L25
9   chr4    9133637        9537919  NM_001256852  USP17L10
10  chr4    9133637        9537919  NM_001256853  USP17L12
12  chr4    9133637        9537919  NM_001256854  USP17L11
15  chr4    9133637        9537919  NM_001256855  USP17L13
16  chr4    9133637        9537919  NM_001256857  USP17L17
17  chr4    9133637        9537919  NM_001256860  USP17L19
18  chr4    9133637        9537919  NM_001256861  USP17L20
19  chr4    9133637        9537919  NM_001256894  USP17L15
20  chr4    9133637        9537919     NR_027279  USP17L6P
21  chr4    9133637        9537919     NR_046416  USP17L9P,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr4  169240700      169350798  NM_001012967    DDX60L,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   11813529       11985048     NM_015204    THSD7A
1  chr7  110651065      111039820  NM_001099658     LRRN3
2  chr7  110651065      111039820  NM_001244606    IMMP2L
4  chr9  137571873      137685769     NM_000093    COL5A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   66991716       67195914     NM_005585         SMAD6
1    chr2   97191461       97491319  NM_001115016        KANSL3
2    chr2   97191461       97491319  NM_001293083        FER1L5
3    chr2   97191461       97491319  NM_001319085        ARID5A
5    chr2   97191461       97491319  NM_001322354        LMAN2L
6    chr2   97191461       97491319     NM_017623         CNNM3
7    chr2   97191461       97491319     NM_020184         CNNM4
9    chr2   97191461       97491319     NR_036074       MIR3127
11   chr2   97191461       97491319     NR_135564  LOC105373496
12   chr7  110698693      110808505  NM_001099658         LRRN3
13   chr7  110698693      110808505  NM_001244606        IMMP2L
15   chr8   83445531       84849303     NR_122034     LINC01419
16   chr8   83445531       84849303     NR_134295  LOC101927141,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr18     644238         882924  NM_001012716     TYMSOS
1   chr18     644238         882924     NM_001071       TYMS
2   chr18     644238         882924  NM_001126123     ENOSF1
3   chr18     644238         882924  NM_001289036      CLUL1
7   chr18     644238         882924     NM_005433       YES1
10   chr2   51290368       51625541     NR_135237  LOC730100
11   chr7    3781355        3982095     NM_152744       SDK1
12   chr7  145981072      146083175     NM_014141    CNTNAP2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  242441242      242694156  NM_001164356         THAP4
1   chr2  242441242      242694156  NM_001165031         DTYMK
2   chr2  242441242      242694156  NM_001271978         STK25
5   chr2  242441242      242694156  NM_001287249        D2HGDH
6   chr2  242441242      242694156  NM_001330161          ING5
10  chr2  242441242      242694156     NM_032515           BOK
11  chr2  242441242      242694156     NM_178326         ATG4B
12  chr2  242441242      242694156     NR_033346       BOK-AS1
13  chr4  131798432      132804629     NR_125883  LOC101927305
15  chr6  128688108      128871619  NM_001291982         PTPRK
17  chr7   64083652       64389768  NM_001160183        ZNF138
18  chr7   64083652       64389768  NM_001282360        ZNF107
19  chr7   64083652       64389768     NM_021148        ZNF273
22  chr7   64083652       64389768     NR_106898       MIR6839
23  chr7   64180384       64415127  NM_001160183        ZNF138
24  chr7   64180384       64415127     NM_021148        ZNF273,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    1530847        1634283     NM_018702        ADARB2
1   chr10    1530847        1634283     NR_033387    ADARB2-AS1
2   chr17   21241246       21504738  NM_001113434      C17orf51
3   chr17   21241246       21504738  NM_001194958        KCNJ18
4   chr17   21241246       21504738     NM_021012        KCNJ12
5    chr7  143005220      144490405     NM_000083         CLCN1
6    chr7  143005220      144490405  NM_001001659        OR2A14
7    chr7  143005220      144490405  NM_001003702      ARHGEF35
8    chr7  143005220      144490405  NM_001004135        OR2A12
9    chr7  143005220      144490405  NM_001004488        OR2A25
10   chr7  143005220      144490405  NM_001004685         OR2F2
11   chr7  143005220      144490405  NM_001005281         OR6B1
12   chr7  143005220      144490405  NM_001005287         OR2A1
14   chr7  143005220      144490405  NM_001005328         OR2A7
15   chr7  143005220      144490405  NM_001005480         OR2A2
16   chr7  143005220      144490405  NM_001008747       CTAGE15
17   chr7  143005220      144490405  NM_001080413         NOBOX
18   chr7  143005220      144490405  NM_001130025         TCAF2
20   chr7  143005220      144490405  NM_001206938         TCAF1
22   chr7  143005220      144490405  NM_001278297       FAM131B
23   chr7  143005220      144490405  NM_001278507        CTAGE8
24   chr7  143005220      144490405  NM_001322263  LOC100507507
25   chr7  143005220      144490405     NM_003461           ZYX
26   chr7  143005220      144490405     NM_005232         EPHA1
27   chr7  143005220      144490405     NM_005435       ARHGEF5
28   chr7  143005220      144490405     NM_012365         OR2A5
29   chr7  143005220      144490405     NM_012369         OR2F1
32   chr7  143005220      144490405     NM_022445          TPK1
34   chr7  143005220      144490405     NM_176883       TAS2R41
35   chr7  143005220      144490405     NM_177437       TAS2R60
36   chr7  143005220      144490405     NM_178561        CTAGE6
37   chr7  143005220      144490405     NM_198495        CTAGE4
39   chr7  143005220      144490405     NR_002157        OR2A9P
41   chr7  143005220      144490405     NR_002158       OR2A20P
43   chr7  143005220      144490405     NR_015421     LOC154761
44   chr7  143005220      144490405     NR_033897     EPHA1-AS1
45   chr7  143005220      144490405     NR_033942     ARHGEF34P
46   chr7  143005220      144490405     NR_106952       MIR6892
47   chr7  143005220      144490405     NR_110549       TCAF2P1
49   chr7  143005220      144490405     NR_126022  LOC101928605
50   chr7  143005220      144490405     NR_126023     OR2A1-AS1
52   chr9   12097306       12766836     NM_000550         TYRP1
53   chr9   12097306       12766836     NR_125775   LURAP1L-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   95255906       95476463     NM_007084         SOX21
1   chr13   95255906       95476463     NM_180989        GPR180
2   chr13   95255906       95476463     NR_046514     SOX21-AS1
3   chr13   95255906       95476463     NR_110754  LOC101927284
4   chr13   95255906       95476463     NR_120417  LOC101927248
5   chr15   25735754       26256315     NM_024490        ATP10A
6   chr15   25735754       26256315     NR_039865       MIR4715
7   chr15   25735754       26256315     NR_040082  LOC100128714
8   chr16   72550930       72678821     NR_126330     LINC01572
9    chr7   64070060       64648734  NM_001007253        ERV3-1
10   chr7   64070060       64648734  NM_001160183        ZNF138
11   chr7   64070060       64648734  NM_001282360        ZNF107
12   chr7   64070060       64648734     NM_015852        ZNF117
13   chr7   64070060       64648734     NM_021148        ZNF273
14   chr7   64070060       64648734     NR_033416        CCT6P3
16   chr7   64070060       64648734     NR_077227  LOC100128885
18   chr7   64070060       64648734     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   48945762       49077843  NM_001323575      AGBL4
1   chr14   80052954       80631628  NM_001272020      NRXN3
4   chr16   68620188       68808799  NM_001317184       CDH1
5   chr16   68620188       68808799  NM_001317195       CDH3
6   chr16   68620188       68808799     NR_106988  MIR7641-2
7   chr18   19201275       19308208  NM_001291916     SNRPD1
8   chr18   19201275       19308208  NM_001308256      ABHD3
10  chr18   19201275       19308208     NR_031565   MIR320C1
11  chr20   14668227       14845937     NM_080676    MACROD2
12   chr5   12372511       12832293     NR_033383  LINC01194
13   chr5   12372511       12832293     NR_039659    MIR4454
14   chr7   93233047       93399423     NR_039796    MIR4652,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143569725      143688469     NR_106967       MIR6077
1  chr1  143569725      143688469     NR_111930  LOC100132057
2  chr2  108749869      108887552  NM_001008743       SULT1C3
4  chr2  108749869      108887552     NR_131251     LINC01594
5  chr4   69310830       69443670     NM_001077       UGT2B17
6  chr4   69310830       69443670     NM_014058     TMPRSS11E
7  chr5   17432031       17768927     NR_134270  LOC102723526
9  chr5   17432031       17768927     NR_134273  LOC101929544,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr13   71746835       72043566     NM_080759     DACH1
1   chr14   45478900       45653145  NM_001308120   FAM179B
2   chr14   45478900       45653145  NM_001308133     FANCM
4   chr14   45478900       45653145     NM_002013     FKBP3
5   chr14   45478900       45653145     NM_017922    PRPF39
6   chr14   45478900       45653145     NR_003691  SNORD127
7   chr14   47773520       48035961  NM_001113498     MDGA2
10  chr15   43807747       43949640  NM_001190214   PPIP5K1
11  chr15   43807747       43949640  NM_001282309  CATSPER2
12  chr15   43807747       43949640     NM_002373     MAP1A
14  chr15   43807747       43949640     NM_020990    CKMT1B
15  chr15   43807747       43949640     NM_153700      STRC
19   chr2  110115579      110275949  NM_001099289    SH3RF3
20   chr4   94129908       94622694     NM_001510     GRID2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr20   14671441       14921768     NM_080676       MACROD2
1  chr20   14671441       14921768     NR_037841   MACROD2-AS1
3   chr3   60277865       60563132  NM_001320899          FHIT
4   chr5  142399120      142600390  NM_001135608      ARHGAP26
5   chr5  142399120      142600390     NR_046816  ARHGAP26-IT1
6   chr9   28564300       28682307  NM_001258282        LINGO2,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr12   72538321       72655181  NR_026837  TRHDE-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr20   14666195       14822544     NM_080676    MACROD2
1   chr4   69091076       69240892  NM_001031732     YTHDC1
2   chr4   69091076       69240892     NM_182502  TMPRSS11B
3   chr7  110632936      110971053  NM_001099658      LRRN3
4   chr7  110632936      110971053  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   25309565       25905244  NM_001008564      NUP58
1   chr13   25309565       25905244  NM_001184993      RNF17
2   chr13   25309565       25905244     NM_004685      MTMR6
3   chr13   25309565       25905244     NM_030979     PABPC3
4   chr13   25309565       25905244     NM_152704      AMER2
6   chr13   25309565       25905244     NR_026730    TPTE2P1
7   chr13   25309565       25905244     NR_047594      CENPJ
8   chr13   25309565       25905244     NR_120427  LINC01053
9   chr13   25309565       25905244     NR_120428  LINC00463
10  chr15   28698782       28818822     NR_033351    GOLGA8F
11  chr15   28698782       28818822     NR_033353    GOLGA8G
12  chr15   28698782       28818822     NR_039734  MIR4509-3
13   chr3  176563764      176800681  NM_001321193    TBL1XR1,   chrom  cnv_start  cnv_terminate    tx_name   gene_name
0  chr2   95502292       95717618  NM_022439         MAL
1  chr2   95502292       95717618  NM_144705       TEKT4
2  chr2   95502292       95717618  NR_003366  ANKRD20A8P
3  chr2   95502292       95717618  NR_037597   LOC442028
4  chr7   63018187       63151381  NR_036246   MIR4283-1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72566793       72911429     NM_013381         TRHDE
1   chr12   72566793       72911429     NR_026836     TRHDE-AS1
3   chr15   59973645       60638176  NM_001320674         BNIP2
5   chr15   59973645       60638176     NM_012182         FOXB1
6    chr2   36325023       36643288     NM_016441         CRIM1
7    chr2   36325023       36643288     NR_037631  LOC100288911
8    chr3  105304817      105406084  NM_001321786          CBLB
14   chr4   69185376       69394841  NM_001031732        YTHDC1
15   chr4   69185376       69394841     NM_014058     TMPRSS11E,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr5   17764137       18040016     NR_134286  LOC646241
2  chr7   14907228       15572149  NM_001004320       AGMO
3  chr7  110690178      110946639  NM_001099658      LRRN3
4  chr7  110690178      110946639  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  162777347      162895203     NM_016371    HSD17B7
1    chr1  162777347      162895203     NM_178550    CCDC190
2   chr15   42684345       42913564  NM_001130447      HAUS2
3   chr15   42684345       42913564  NM_001284306     ZNF106
6   chr15   42684345       42913564     NM_003825     SNAP23
7   chr15   42684345       42913564     NM_020759     STARD9
8   chr15   42684345       42913564     NM_153260     LRRC57
9   chr15   42684345       42913564     NM_173087      CAPN3
12  chr21   22672952       22813017     NM_004540      NCAM2
13   chr7  110523893      110765746  NM_001099658      LRRN3
14   chr7  110523893      110765746  NM_001244606     IMMP2L
16   chr8    6757475        7170073  NM_001302265     DEFA1B
17   chr8    6757475        7170073     NM_001925      DEFA4
18   chr8    6757475        7170073     NM_001926      DEFA6
19   chr8    6757475        7170073     NM_004084      DEFA1
21   chr8    6757475        7170073     NM_005217      DEFA3
22   chr8    6757475        7170073     NM_021010      DEFA5
23   chr8    6757475        7170073     NR_027000  LINC00965
26   chr8    6757475        7170073     NR_027423     FAM66B
27   chr8    6757475        7170073     NR_029386    DEFA10P
28   chr8    6757475        7170073     NR_036686     DEFT1P
30   chr8    6757475        7170073     NR_073407     DEFA8P
31   chr8    6757475        7170073     NR_073408     DEFA9P
32   chr8    6757475        7170073     NR_073421    DEFA11P,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   45495326       45648637  NM_001308120    FAM179B
1   chr14   45495326       45648637  NM_001308133      FANCM
3   chr14   45495326       45648637     NM_002013      FKBP3
4   chr14   45495326       45648637     NM_017922     PRPF39
5   chr14   45495326       45648637     NR_003691   SNORD127
6    chr2  242407474      242536263  NM_001164356      THAP4
7    chr2  242407474      242536263  NM_001271978      STK25
10   chr2  242407474      242536263     NM_014808      FARP2
12   chr2  242407474      242536263     NM_032515        BOK
13   chr2  242407474      242536263     NR_033346    BOK-AS1
14   chr2  242407474      242536263     NR_036083    MIR3133
15   chr6  162862422      163000143     NM_013988      PARK2
16   chr7   64096982       64312815  NM_001160183     ZNF138
17   chr7   64096982       64312815  NM_001282360     ZNF107
20   chr7   64096982       64312815     NR_106898    MIR6839
21   chr9     214226         372297  NM_001190458      DOCK8
22   chr9     214226         372297     NM_152569    C9orf66
24   chr9    2465995        2643369     NM_003383      VLDLR
25   chr9    2465995        2643369     NR_015375  VLDLR-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81514380       81665796     NR_029407     LOC642361
1   chr10   81514380       81665796     NR_033857       BMS1P21
2   chr10   81514380       81665796     NR_120611    NUTM2B-AS1
5   chr13   41372492       42125845  NM_001110798         NAA16
6   chr13   41372492       42125845  NM_001145353          ELF1
7   chr13   41372492       42125845     NM_004294         MTRF1
8   chr13   41372492       42125845     NM_007187          WBP4
9   chr13   41372492       42125845     NM_014059          RGCC
10  chr13   41372492       42125845     NM_014252      SLC25A15
12  chr13   41372492       42125845     NM_032138        KBTBD7
13  chr13   41372492       42125845     NM_152903        KBTBD6
15  chr13   41372492       42125845     NR_002163       OR7E37P
16  chr13   41372492       42125845     NR_003365       SUGT1P3
17  chr13   41372492       42125845     NR_030352        MIR621
18  chr13   41372492       42125845     NR_036127       MIR3168
19  chr13   41372492       42125845     NR_038259       TPTE2P5
20  chr13   41372492       42125845     NR_120423  LOC101929140
21  chr14   81674864       81800909  NM_001256430         STON2
22  chr14   81674864       81800909  NM_001278940        GTF2A1
25  chr14   81674864       81800909     NR_135252  LOC101928504
26  chr17   48380521       48576576  NM_001166131          EME1
27  chr17   48380521       48576576     NM_001267          CHAD
28  chr17   48380521       48576576  NM_001288968         ACSF2
29  chr17   48380521       48576576     NM_016504        MRPL27
30  chr17   48380521       48576576     NM_018346         RSAD1
31  chr17   48380521       48576576     NM_018509        LRRC59
32  chr17   48380521       48576576     NM_022167         XYLT2
34   chr4   71372981       71496452  NM_001286731          AMTN
35   chr4   71372981       71496452     NM_016519          AMBN
36   chr4   71372981       71496452     NM_031889          ENAM
37   chr7   19714307       19848792  NM_001002926       TWISTNB
38   chr7   19714307       19848792     NM_152774       TMEM196
39   chr7   19714307       19848792     NR_036101       MIR3146,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67906060       68082924  NM_001127384    CTNNA3
2  chr21   30126918       30269642     NM_013240    N6AMT1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr9   72328832       72449212  NM_001010940      C9orf135
1  chr9   72328832       72449212  NM_001099666         PTAR1
2  chr9   72328832       72449212     NR_038833  C9orf135-AS1,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr9   38964353       39111752  NM_033655   CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   25067005       25378318  NM_001009909      LUZP2
1  chr15   28694348       28800888     NR_033351    GOLGA8F
2  chr15   28694348       28800888     NR_033353    GOLGA8G
3  chr15   28694348       28800888     NR_039734  MIR4509-3
4   chr3     840882        1198236  NM_001289081      CNTN6
5   chr3     840882        1198236     NR_110118  LINC01266
6   chr7   64100149       64204529  NM_001282360     ZNF107
8   chr7   64100149       64204529     NR_106898    MIR6839
9   chr9   30201059       30702591     NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20685277       21013219  NM_001145004      GOLGA6L6
1   chr15   20685277       21013219     NR_027411      GOLGA8CP
2   chr15   20685277       21013219     NR_027992        NBEAP1
3   chr15   20685277       21013219     NR_036432       HERC2P3
4    chr2  216255067      216515408  NM_001306129           FN1
7    chr2  216255067      216515408     NR_037195     LINC00607
8    chr2  216255067      216515408     NR_110607  LOC102724849
9    chr9    5961750        6117689  NM_001017969      KIAA2026
10   chr9    5961750        6117689  NM_001243202        RANBP6
11   chr9    5961750        6117689     NR_039811       MIR4665
12   chr9   41523865       41641872     NR_003528       ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145287019      145463356  NM_001277444         NBPF9
1    chr1  145287019      145463356  NM_001278267        NBPF20
2    chr1  145287019      145463356  NM_001302371        NBPF10
3    chr1  145287019      145463356  NM_001313972         TXNIP
5    chr1  145287019      145463356     NM_032305       POLR3GL
6    chr1  145287019      145463356     NM_145277          HFE2
7    chr1  145287019      145463356     NR_104217       NBPF25P
8    chr1  145287019      145463356     NR_125967  LOC101928979
9   chr10  100683726      102143177     NM_000392         ABCC2
10  chr10  100683726      102143177  NM_001001342       BLOC1S2
11  chr10  100683726      102143177  NM_001100626        ERLIN1
12  chr10  100683726      102143177  NM_001166244         HPSE2
13  chr10  100683726      102143177  NM_001253837        PKD2L1
14  chr10  100683726      102143177     NM_001278          CHUK
17  chr10  100683726      102143177  NM_001303404       CWF19L1
18  chr10  100683726      102143177     NM_001308          CPN1
19  chr10  100683726      102143177  NM_001318326         DNMBP
21  chr10  100683726      102143177  NM_001320974         COX15
23  chr10  100683726      102143177     NM_002079          GOT1
24  chr10  100683726      102143177     NM_005063           SCD
27  chr10  100683726      102143177     NM_015960          CUTC
28  chr10  100683726      102143177     NM_020348         CNNM1
29  chr10  100683726      102143177     NM_020354        ENTPD7
30  chr10  100683726      102143177     NM_031212      SLC25A28
31  chr10  100683726      102143177     NM_145285        NKX2-3
32  chr10  100683726      102143177     NR_002954       SNORA12
33  chr10  100683726      102143177     NR_024130     DNMBP-AS1
34  chr10  100683726      102143177     NR_026762      OLMALINC
35  chr10  100683726      102143177     NR_106762       MIR6507
36  chr10  100683726      102143177     NR_120618     LINC01475
37  chr16   76822787       77036352     NR_039870       MIR4719
38   chr2  167147586      167359423     NM_002976         SCN7A
39   chr2  167147586      167359423     NM_002977         SCN9A
40   chr2  167147586      167359423     NR_110260  LOC101929680
41   chr7  110781810      110928062  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr20    5148801        5421655     NM_003818         CDS2
1   chr20    5148801        5421655     NM_144773       PROKR2
2   chr20    5148801        5421655     NR_038240    LINC00658
3    chr8  103968629      104068903     NM_001695     ATP6V1C1
4    chr8  103968629      104068903     NR_126339    AZIN1-AS1
5    chr9   11496959       13245480     NM_000550        TYRP1
6    chr9   11496959       13245480  NM_001261407         MPDZ
8    chr9   11496959       13245480     NM_203403      LURAP1L
9    chr9   11496959       13245480     NR_125775  LURAP1L-AS1
10   chr9   11496959       13245480     NR_132976     SNORD137,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143087900      143755875     NR_104014     LINC01138
1   chr1  143087900      143755875     NR_106967       MIR6077
2   chr1  143087900      143755875     NR_110761  LOC102723769
3   chr1  143087900      143755875     NR_111930  LOC100132057
4  chr20   25349501       25478060  NM_001042472        ABHD12
5  chr20   25349501       25478060  NM_001318226          NINL
7  chr20   25349501       25478060     NM_021067         GINS1,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0    chr1   86112159       86248949     NM_017953          ZNHIT6
1    chr1   86112159       86248949     NM_152890         COL24A1
2   chr15   43917253       44134472  NM_001018108           SERF2
3   chr15   43917253       44134472  NM_001167941           WDR76
7   chr15   43917253       44134472  NM_001199885            HYPK
8   chr15   43917253       44134472  NM_001258031         SERINC4
9   chr15   43917253       44134472  NM_001282309        CATSPER2
10  chr15   43917253       44134472  NM_001321927          CKMT1A
13  chr15   43917253       44134472     NM_005313           PDIA3
14  chr15   43917253       44134472     NM_005926           MFAP1
15  chr15   43917253       44134472     NM_025165            ELL3
17  chr15   43917253       44134472     NR_002318      CATSPER2P1
18  chr15   43917253       44134472     NR_031695         MIR1282
19  chr15   43917253       44134472     NR_037673  SERF2-C15ORF63
22   chr2   78301628       78439272     NR_110287    LOC101927948
23   chr2   78301628       78439272     NR_110288    LOC101927967
24   chr7   64028810       64159823  NM_001282360          ZNF107
25   chr7   64028810       64159823     NR_033245       LOC641746
26   chr7   64028810       64159823     NR_077227    LOC100128885
28   chr7   64028810       64159823     NR_106898         MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    5158897        5375661     NM_001818        AKR1C4
1   chr10    5158897        5375661     NR_027916       AKR1C8P
2   chr19    1929999        2091048     NM_001319       CSNK1G2
3   chr19    1929999        2091048     NM_017572         MKNK2
4   chr19    1929999        2091048     NM_017797         BTBD2
5   chr19    1929999        2091048     NM_130807         MOB3A
6   chr19    1929999        2091048     NR_033400   CSNK1G2-AS1
7   chr21   17876132       18069797     NR_027790      MIR99AHG
9   chr21   17876132       18069797     NR_029480      MIRLET7C
10  chr21   17876132       18069797     NR_029514        MIR99A
11  chr21   17876132       18069797     NR_029694      MIR125B2
20   chr4   69250179       69359903     NM_014058     TMPRSS11E
21   chr7  143700161      143894400  NM_001001659        OR2A14
22   chr7  143700161      143894400  NM_001003702      ARHGEF35
23   chr7  143700161      143894400  NM_001004135        OR2A12
24   chr7  143700161      143894400  NM_001004488        OR2A25
25   chr7  143700161      143894400  NM_001005281         OR6B1
26   chr7  143700161      143894400  NM_001005480         OR2A2
27   chr7  143700161      143894400     NM_012365         OR2A5
28   chr7  143700161      143894400     NM_198495        CTAGE4
29   chr7  143700161      143894400     NR_126022  LOC101928605
30   chr7  143700161      143894400     NR_126023     OR2A1-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   68596334       68741763  NM_001305204     ZFP90
2  chr16   68596334       68741763  NM_001317195      CDH3
3   chr3   60283462       60408283  NM_001320899      FHIT,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr12   16327856       16560274  NM_001170798    SLC15A5
1  chr12   16327856       16560274  NM_001267598      MGST1
6   chr4  169236336      169352021  NM_001012967     DDX60L
8   chr4  169236336      169352021     NM_017631      DDX60
9   chr5   17670205       17829563     NR_134286  LOC646241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   71502470       72159083  NM_001277227          LGR5
1   chr12   71502470       72159083     NM_004616        TSPAN8
2   chr12   71502470       72159083     NM_014999         RAB21
3   chr12   71502470       72159083     NM_018279        TMEM19
4   chr12   71502470       72159083     NM_031435         THAP2
5   chr12   71502470       72159083     NM_144982        ZFC3H1
6   chr16   68628588       68939737  NM_001317184          CDH1
7   chr16   68628588       68939737  NM_001317195          CDH3
8   chr16   68628588       68939737     NM_024562        TANGO6
9   chr16   68628588       68939737     NR_106988     MIR7641-2
10  chr21   30152505       30347182  NM_001320766          LTN1
11  chr21   30152505       30347182     NM_013240        N6AMT1
14   chr7   63965288       65307068  NM_001007253        ERV3-1
15   chr7   63965288       65307068  NM_001130022        ZNF680
16   chr7   63965288       65307068  NM_001160183        ZNF138
17   chr7   63965288       65307068  NM_001282360        ZNF107
18   chr7   63965288       65307068  NM_001287532         ZNF92
19   chr7   63965288       65307068     NM_015852        ZNF117
20   chr7   63965288       65307068     NM_021148        ZNF273
22   chr7   63965288       65307068     NR_002961       SNORA22
23   chr7   63965288       65307068     NR_003110        CCT6P1
24   chr7   63965288       65307068     NR_027392       INTS4P2
25   chr7   63965288       65307068     NR_033245     LOC641746
26   chr7   63965288       65307068     NR_033416        CCT6P3
27   chr7   63965288       65307068     NR_038378     LOC441242
29   chr7   63965288       65307068     NR_077227  LOC100128885
32   chr7   63965288       65307068     NR_106898       MIR6839
33   chr7  110547539      110692861  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4188178        4619070  NM_001004137        OR52M1
1   chr11    4188178        4619070  NM_001005161        OR52B4
2   chr11    4188178        4619070  NM_001005169        OR52I1
3   chr11    4188178        4619070  NM_001005170        OR52I2
4   chr11    4188178        4619070  NM_001005171        OR52K1
5   chr11    4188178        4619070  NM_001005172        OR52K2
6   chr11    4188178        4619070     NM_003141        TRIM21
7   chr11    4188178        4619070     NM_144663      C11orf40
8   chr11    4188178        4619070     NR_047550  LOC100506082
9   chr15   99913035      100146409  NM_001284400        LRRC28
11  chr15   99913035      100146409     NM_005587         MEF2A
12  chr19   21494240       21675350  NM_001297560        ZNF708
15  chr19   21494240       21675350     NM_145326        ZNF493
17  chr19   21494240       21675350     NR_027130        ZNF738
18  chr19   21494240       21675350     NR_037194     LINC00664
19  chr21   28174060       28280519     NM_006988       ADAMTS1
20   chr4   93928815       94108091     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67212929       67493843     NM_000695   ALDH3B2
1   chr11   67212929       67493843     NM_000852     GSTP1
3   chr11   67212929       67493843  NM_001078650   TMEM134
4   chr11   67212929       67493843  NM_001166102    NDUFV1
5   chr11   67212929       67493843  NM_001243750     NUDT8
6   chr11   67212929       67493843  NM_001300895     CABP4
8   chr11   67212929       67493843  NM_001302959       AIP
9   chr11   67212929       67493843  NM_001318496     CABP2
11  chr11   67212929       67493843     NM_004910   PITPNM1
12  chr11   67212929       67493843     NM_005851   CDK2AP2
13  chr11   67212929       67493843     NM_005995     TBX10
14  chr11   67212929       67493843     NM_080658      ACY3
17  chr11   67212929       67493843     NM_206997    GPR152
18  chr11   67212929       67493843     NR_033791    DOC2GP
20  chr11   67212929       67493843     NR_106810   MIR6752
21  chr11   67212929       67493843     NR_130935  C11orf72,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12771963       12913076  NM_001013631      HNRNPCL1
1    chr1   12771963       12913076  NM_001080830      PRAMEF12
2    chr1   12771963       12913076  NM_001103170       AADACL3
3    chr1   12771963       12913076  NM_001146181      HNRNPCL3
4    chr1   12771963       12913076  NM_001146344      PRAMEF11
5    chr1   12771963       12913076  NM_001294139       PRAMEF1
6    chr1   12771963       12913076  NM_001302551      HNRNPCL4
8    chr1   12771963       12913076     NM_152290      C1orf158
9   chr13   93084645       95746850  NM_001301829         ABCC4
10  chr13   93084645       95746850  NM_001304430          TGDS
11  chr13   93084645       95746850  NM_001322186           DCT
13  chr13   93084645       95746850     NM_004466          GPC5
14  chr13   93084645       95746850     NM_005708          GPC6
15  chr13   93084645       95746850     NM_007084         SOX21
16  chr13   93084645       95746850     NM_180989        GPR180
17  chr13   93084645       95746850     NR_046514     SOX21-AS1
18  chr13   93084645       95746850     NR_046520      GPC5-AS1
19  chr13   93084645       95746850     NR_046535      GPC6-AS1
20  chr13   93084645       95746850     NR_046536      GPC6-AS2
21  chr13   93084645       95746850     NR_047487     LINC00557
24  chr13   93084645       95746850     NR_049840      MIR548AS
25  chr13   93084645       95746850     NR_110754  LOC101927284
26  chr13   93084645       95746850     NR_120417  LOC101927248
27  chr13   93084645       95746850     NR_126360     LINC00363
28   chr7   21413074       21530124  NM_001326542           SP4
29   chr7   21413074       21530124     NR_031594       MIR1183
31   chr7   64086244       64469770  NM_001007253        ERV3-1
32   chr7   64086244       64469770  NM_001160183        ZNF138
33   chr7   64086244       64469770  NM_001282360        ZNF107
34   chr7   64086244       64469770     NM_015852        ZNF117
35   chr7   64086244       64469770     NM_021148        ZNF273
38   chr7   64086244       64469770     NR_106898       MIR6839
39   chr9   39028098       40044435  NM_001085452     SPATA31A1
41   chr9   39028098       40044435     NM_033655       CNTNAP3
42   chr9   39028098       40044435     NR_003528       ZNF658B
43   chr9   39028098       40044435     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   50778624       51026112  NM_001330082         NRXN1
1   chr2   50778624       51026112     NR_130470       MIR8485
2   chr4    9012196        9228933  NM_001256852      USP17L10
3   chr4    9012196        9228933  NM_001256853      USP17L12
4   chr4    9012196        9228933  NM_001256854      USP17L11
5   chr4    9012196        9228933  NM_001256855      USP17L13
6   chr7   88309407       90859327  NM_001040665        STEAP2
8   chr7   88309407       90859327  NM_001160138        CFAP69
9   chr7   88309407       90859327  NM_001185073        CLDN12
11  chr7   88309407       90859327  NM_001287135         CDK14
14  chr7   88309407       90859327     NM_012449        STEAP1
15  chr7   88309407       90859327     NM_033107       GTPBP10
16  chr7   88309407       90859327     NM_152706       C7orf62
17  chr7   88309407       90859327     NM_181646       ZNF804B
18  chr7   88309407       90859327     NR_003551     DPY19L2P4
19  chr7   88309407       90859327     NR_102424  LOC101409256
20  chr7   88309407       90859327     NR_110029    STEAP2-AS1
21  chr7   88309407       90859327     NR_110085  LOC101927446,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr2   52854932       53153542  NR_039630    MIR4431
1  chr5  152224199      152345805  NR_109877  LINC01470
2  chr7  117552118      118197420  NM_016200       LSM8
3  chr7  117552118      118197420  NM_019644     ANKRD7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  134344225      134525981     NR_033852     LOC283177
1   chr13   67228907       67426215     NM_020403         PCDH9
2   chr13   67228907       67426215     NR_046527     PCDH9-AS2
3    chr7   75717778       75822675     NR_135079       GTF2IP7
4    chr9   41840054       42538764  NM_001012419     ANKRD20A3
5    chr9   41840054       42538764  NM_001012421     ANKRD20A2
6    chr9   41840054       42538764     NR_003670        FGF7P3
7    chr9   41840054       42538764     NR_015363         GLIDR
8    chr9   41840054       42538764     NR_121572      GXYLT1P3
11   chr9   41840054       42538764     NR_126048  LOC102724238
12   chr9   41840054       42538764     NR_126049     LOC554249
13   chr9   41840054       42538764     NR_136310  LOC105379252,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr9   67142683       67274825  NR_002817    AQP7P1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   79075285       79221800  NM_001098816      TENM4
1  chr11   79075285       79221800     NR_030598     MIR708
2  chr11   79075285       79221800     NR_049841    MIR5579
3  chr13  113439465      113674959  NM_001112732      MCF2L
7  chr13  113439465      113674959     NM_015205     ATP11A
8  chr13  113439465      113674959     NR_034002  MCF2L-AS1
9  chr16    8578177        8704375  NM_001146336    TMEM114,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11  134240034      134460591     NM_054025     B3GAT1
1  chr11  134240034      134460591     NM_138342     GLB1L2
2  chr11  134240034      134460591     NR_033852  LOC283177
3   chr4     149952         271632  NM_001039127     ZNF718
4   chr4     149952         271632  NM_001137608     ZNF732
7   chr4     149952         271632     NR_027481    ZNF876P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83492970       83627715  NM_001142699          DLG2
4   chr16    8645660        8983332     NM_000303          PMM2
5   chr16    8645660        8983332     NM_000663          ABAT
6   chr16    8645660        8983332  NM_001042476       CARHSP1
13  chr16    8645660        8983332     NM_015421       TMEM186
15  chr16    8645660        8983332     NM_024109       METTL22
16  chr20   10828701       10931887     NR_109866  LOC101929413
17   chr3  162879913      165374842     NM_001041            SI
18   chr3  162879913      165374842  NM_001318810       SLITRK3
21   chr3  162879913      165374842     NR_031665       MIR1263
22   chr3  162879913      165374842     NR_033945     LINC01192
23   chr3  162879913      165374842     NR_125764     LINC01322
24   chr3  162879913      165374842     NR_126405     LINC01324
25   chr5   20459343       20668010  NM_001291956         CDH18
26   chr5  104372253      104633679     NR_000039       RAB9BP1
27   chr6   20839343       21011026     NM_017774        CDKAL1
28   chr7   75718103       75853867  NM_001110199         SRRM3
29   chr7   75718103       75853867     NR_135079       GTF2IP7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28668569       28930167     NR_033351       GOLGA8F
1   chr15   28668569       28930167     NR_033353       GOLGA8G
2   chr15   28668569       28930167     NR_036443       HERC2P9
3   chr15   28668569       28930167     NR_039734     MIR4509-3
5   chr18   24832419       25003734     NR_134589  LOC105372038
6   chr19   23405576       23887746  NM_001300951         ZNF91
7   chr19   23405576       23887746     NM_138330        ZNF675
8   chr19   23405576       23887746     NR_045525        ZNF724
9   chr19   23405576       23887746     NR_103741        IPO5P1
10  chr19   23405576       23887746     NR_126448     LINC01224
11  chr19   33135680       33297562  NM_001105570        NUDT19
12  chr19   33135680       33297562  NM_001110822        TDRD12
13  chr19   33135680       33297562     NM_032139       ANKRD27
14  chr19   33135680       33297562     NM_207391        RGS9BP
15   chr2  110155925      110344142  NM_001099289        SH3RF3
16   chr2  110155925      110344142  NM_001321504        SEPT10
18   chr9   67226892       67440003     NR_002817        AQP7P1
19   chr9   67226892       67440003     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr17   48392578       48594443  NM_001166131      EME1
1  chr17   48392578       48594443     NM_001267      CHAD
2  chr17   48392578       48594443  NM_001288968     ACSF2
3  chr17   48392578       48594443     NM_016504    MRPL27
4  chr17   48392578       48594443     NM_018346     RSAD1
5  chr17   48392578       48594443     NM_018509    LRRC59
6  chr17   48392578       48594443     NM_022167     XYLT2
7  chr17   48392578       48594443     NM_032133   MYCBPAP,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   71443374       71864615  NM_001277227      LGR5
1   chr12   71443374       71864615     NM_004616    TSPAN8
2   chr21   22651641       22785474     NM_004540     NCAM2
3   chr22   19890864       20037343     NM_000754      COMT
6   chr22   19890864       20037343  NM_001282512    TXNRD2
7   chr22   19890864       20037343  NM_001283116    TANGO2
10  chr22   19890864       20037343     NM_001670     ARVCF
13  chr22   19890864       20037343     NR_029706    MIR185
14  chr22   19890864       20037343     NR_039918   MIR4761,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  177049618      177270374  NM_001286164      ASTN1
2    chr1  177049618      177270374     NM_021165     BRINP2
4   chr13   80795377       81205802  NM_001318536      SPRY2
7   chr15   28228260       28343471     NM_000275       OCA2
9    chr3  176573897      176741876  NM_001321193    TBL1XR1
11   chr4  133452856      133714609     NR_126401  LINC01256
12   chr5      95073         248439  NM_001080478    LRRC14B
13   chr5      95073         248439     NM_004168       SDHA
14   chr5      95073         248439     NM_052909   PLEKHG4B
15   chr5      95073         248439     NM_145265    CCDC127,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  233722201      233964328     NM_002245        KCNK1
1    chr1  233722201      233964328     NR_039625      MIR4427
2   chr12   72568691       72680841     NM_013381        TRHDE
3   chr12   72568691       72680841     NR_026836    TRHDE-AS1
5   chr20   14799286       15202950  NM_001033087      MACROD2
7   chr20   14799286       15202950     NR_037841  MACROD2-AS1
9    chr8   19728262       19863501     NM_000237          LPL
10   chr9   38946213       39106524     NM_033655      CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   55692140       55970779     NM_014924         ATG14
1   chr14   55692140       55970779     NM_017943        FBXO34
3   chr14   55692140       55970779     NM_199047         TBPL2
4   chr16   76627241       76785195     NR_110934  LOC101928203
5    chr9  132379434      132829704     NM_000113         TOR1A
6    chr9  132379434      132829704  NM_001136557        GPR107
7    chr9  132379434      132829704  NM_001286796         NTMT1
12   chr9  132379434      132829704     NM_004878         PTGES
13   chr9  132379434      132829704     NM_006676         USP20
14   chr9  132379434      132829704     NM_014506         TOR1B
15   chr9  132379434      132829704     NM_015033         FNBP1
16   chr9  132379434      132829704     NM_016307         PRRX2
17   chr9  132379434      132829704     NM_016520       C9orf78
18   chr9  132379434      132829704     NM_177999          ASB6
19   chr9  132379434      132829704     NM_199350       C9orf50
20   chr9  132379434      132829704     NR_106914       MIR6855
21   chr9  132379434      132829704     NR_132102     PRRX2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   47892491       49144323     NM_000088        COL1A1
1   chr17   47892491       49144323  NM_001077503          TAC4
2   chr17   47892491       49144323  NM_001144070         ABCC3
3   chr17   47892491       49144323  NM_001166131          EME1
4   chr17   47892491       49144323  NM_001168215        TMEM92
5   chr17   47892491       49144323  NM_001199158          KAT7
6   chr17   47892491       49144323  NM_001199898          PDK2
9   chr17   47892491       49144323  NM_001242791      FLJ45513
10  chr17   47892491       49144323  NM_001243877          TOB1
12  chr17   47892491       49144323  NM_001251971         SPAG9
13  chr17   47892491       49144323  NM_001257359        SAMD14
14  chr17   47892491       49144323  NM_001258372       SPATA20
15  chr17   47892491       49144323     NM_001267          CHAD
16  chr17   47892491       49144323  NM_001288968         ACSF2
17  chr17   47892491       49144323  NM_001330330        LUC7L3
18  chr17   47892491       49144323  NM_001330341       WFIKKN2
19  chr17   47892491       49144323     NM_001934          DLX4
20  chr17   47892491       49144323     NM_002204         ITGA3
24  chr17   47892491       49144323     NM_005220          DLX3
26  chr17   47892491       49144323     NM_016504        MRPL27
27  chr17   47892491       49144323     NM_017957          EPN3
28  chr17   47892491       49144323     NM_018346         RSAD1
29  chr17   47892491       49144323     NM_018509        LRRC59
30  chr17   47892491       49144323     NM_018896       CACNA1G
31  chr17   47892491       49144323     NM_022167         XYLT2
32  chr17   47892491       49144323     NM_032133       MYCBPAP
33  chr17   47892491       49144323     NM_032595       PPP1R9B
34  chr17   47892491       49144323     NM_052855       ANKRD40
38  chr17   47892491       49144323     NR_024193         HILS1
39  chr17   47892491       49144323     NR_038230     LOC284080
40  chr17   47892491       49144323     NR_038439   CACNA1G-AS1
41  chr17   47892491       49144323     NR_038458      TOB1-AS1
42  chr17   47892491       49144323     NR_073199     LINC00483
43  chr17   47892491       49144323     NR_107026       MIR8059
45  chr17   47892491       49144323     NR_110806  LOC101927230
46  chr17   47892491       49144323     NR_125805    TMEM92-AS1
47  chr17   47892491       49144323     NR_135553          SGCA
48  chr17   47892491       49144323     NR_135675  LOC105371824
49   chr2   51698080       51804378     NR_135237     LOC730100
50   chr5  104214204      104470399     NR_000039       RAB9BP1
51   chr7   88292030       88804251     NM_152706       C7orf62
52   chr7   88292030       88804251     NM_181646       ZNF804B
53   chr7  110693033      112249274  NM_001099658         LRRN3
54   chr7  110693033      112249274  NM_001134468        LSMEM1
55   chr7  110693033      112249274  NM_001197079         IFRD1
57   chr7  110693033      112249274  NM_001244606        IMMP2L
59   chr7  110693033      112249274     NM_014705         DOCK4
60   chr7  110693033      112249274     NM_021994        ZNF277
63   chr7  110693033      112249274     NR_103806     DOCK4-AS1,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   28742587       28895047  NR_033351   GOLGA8F
1  chr15   28742587       28895047  NR_033353   GOLGA8G
2  chr21   22391405       22896759  NM_004540     NCAM2
3   chr8    4210091        4439753  NM_033225     CSMD1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   19567803       19683803  NM_001142308     MALRD1
1  chr20   14711169       14851234     NM_080676    MACROD2
2   chr4  189228255      189398857     NR_033869  LINC01060,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr13   86312653       86450336     NM_032229       SLITRK6
1  chr14   47811097       48102244  NM_001113498         MDGA2
4   chr2   50767675       50879125  NM_001330082         NRXN1
5   chr2  133619619      133746823     NM_207363        NCKAP5
6   chr2  133619619      133746823     NR_135572  LOC101928185
7   chr6  145821850      146099573     NM_005670         EPM2A
8   chr6  145821850      146099573     NR_038246  LOC100507557
9   chr7   89288499       89559450     NR_110029    STEAP2-AS1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr6  162663925      163149185  NM_001080378     PACRG
2  chr6  162663925      163149185     NM_013988     PARK2,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3   59998670       60104729  NM_001320899      FHIT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   96872644       99416919  NM_001243270         CNTN5
2   chr20   14742289       15170186     NM_080676       MACROD2
3   chr20   14742289       15170186     NR_037841   MACROD2-AS1
5   chr20   40558278       42083977     NM_133170         PTPRT
6   chr20   40558278       42083977     NR_110004  LOC101927159
7    chr7   64119728       64267975  NM_001160183        ZNF138
8    chr7   64119728       64267975  NM_001282360        ZNF107
11   chr7   64119728       64267975     NR_106898       MIR6839,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2  186280796      186586518  NR_110214  LOC101927196,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   10536440       11048661  NM_001079512        TVP23A
1   chr16   10536440       11048661  NM_001243403       CLEC16A
2   chr16   10536440       11048661  NM_001256160       ATF7IP2
3   chr16   10536440       11048661  NM_001286402         CIITA
4   chr16   10536440       11048661  NM_001323594         NUBP1
8   chr16   10536440       11048661     NM_001424          EMP2
10  chr16   10536440       11048661     NM_014015          DEXI
12  chr16   10536440       11048661     NM_144674         TEKT5
15  chr21   23451580       23617311     NR_038400     LINC00308
16  chr21   23451580       23617311     NR_109959  LOC101927843
17   chr7   16463500       16564832     NM_015464       SOSTDC1,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2  117981382      118578789  NM_006773         DDX18
1  chr9   67141149       67550252  NR_002817        AQP7P1
2  chr9   67141149       67550252  NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr13  113483659      113603699     NM_015205    ATP11A
1   chr16   71098492       71227145  NM_001198542     HYDIN
4    chr7  110649794      110768497  NM_001099658     LRRN3
5    chr7  110649794      110768497  NM_001244606    IMMP2L
7    chr9  116792362      116948751  NM_001318041    ZNF618
8    chr9  116792362      116948751     NM_001633      AMBP
9    chr9  116792362      116948751     NM_032888   COL27A1
10   chr9  116792362      116948751     NM_138424     KIF12,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr21   36063993       36173858  NM_001001890       RUNX1
1   chr21   36063993       36173858  NM_001317009       CLIC6
3   chr21   36063993       36173858     NR_024351   LINC00160
4   chr21   36063993       36173858     NR_038885   LINC01426
6    chr7   63847253       63994474  NM_001130022      ZNF680
8    chr7   63847253       63994474     NR_029404     YWHAEP1
9    chr7  153822292      155419082  NM_001039350        DPP6
10   chr7  153822292      155419082  NM_001103176       CNPY1
13   chr7  153822292      155419082  NM_001346590      INSIG1
14   chr7  153822292      155419082     NM_001427         EN2
15   chr7  153822292      155419082     NM_007349      PAXIP1
16   chr7  153822292      155419082     NM_024012       HTR5A
18   chr7  153822292      155419082     NR_024476  PAXIP1-AS2
20   chr7  153822292      155419082     NR_028090  PAXIP1-AS1
21   chr7  153822292      155419082     NR_038945   HTR5A-AS1
22   chr7  153822292      155419082     NR_103545       BLACE,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   68041939       68154676  NM_001127384    CTNNA3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11  132207146      132488015  NM_001012393     OPCML
3   chr6  162887365      163103361     NM_013988     PARK2,    chrom  cnv_start  cnv_terminate       tx_name          gene_name
0  chr22   17118488       17230843     NR_001591             TPTEP1
1  chr22   17118488       17230843     NR_040115  ANKRD62P1-PARP4P3
2  chr22   17118488       17230843     NR_134584       LOC101929350
3   chr7  110626269      110865800  NM_001099658              LRRN3
4   chr7  110626269      110865800  NM_001244606             IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   84049530       84423233  NM_001142699       DLG2
2   chr9   88404415       88513498     NR_029410  LOC389765,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   25246566       25398046  NM_001184993         RNF17
1   chr13   25246566       25398046  NM_001185085        ATP12A
2   chr15   28539983       28675222     NM_004667         HERC2
3   chr15   28539983       28675222     NR_033351       GOLGA8F
4   chr15   28539983       28675222     NR_033353       GOLGA8G
5   chr15   28539983       28675222     NR_039734     MIR4509-3
6    chr2  193429980      194920058     NR_002769        PCGEM1
7   chr20   25380626       25493180  NM_001318226          NINL
8   chr20   25380626       25493180     NM_021067         GINS1
9   chr21   22552712       22682281     NM_004540         NCAM2
10   chr5   95297538       95489342     NM_012081          ELL2
11   chr5   95297538       95489342     NR_030309        MIR583
12   chr5   95297538       95489342     NR_130776  LOC101929710,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   86665048       86985901  NM_001168724       TMEM135
1  chr11   86665048       86985901     NM_012193          FZD4
2  chr11   86665048       86985901     NR_038905  LOC100506368
3   chr2   51213348       51336199  NM_001330079         NRXN1
6   chr2   51213348       51336199     NR_135237     LOC730100
7  chr21   30138116       30247199     NR_047510        N6AMT1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  144763890      144890455  NM_001198832    PDE4DIP
2    chr1  144763890      144890455  NM_001277444      NBPF9
3    chr1  144763890      144890455  NM_001278267     NBPF20
4    chr1  144763890      144890455     NR_102405      NBPF8
5   chr15   54569749       54736557  NM_001080534     UNC13C
7    chr9   39097004       39691408  NM_001085452  SPATA31A1
8    chr9   39097004       39691408     NM_033655    CNTNAP3
9    chr9   39097004       39691408     NR_003528    ZNF658B
10   chr9   39097004       39691408     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   68347410       68491442  NM_001127384     CTNNA3
2   chr5  119944564      120109927  NM_001300783      PRR16
5   chr9   41490980       41639707  NM_001113541  SPATA31A5
6   chr9   41490980       41639707     NM_015667  SPATA31A7
7   chr9   41490980       41639707     NR_003528    ZNF658B
8   chr9   41490980       41639707     NR_026803    FAM74A1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  110669594      110935001  NM_001099658     LRRN3
1  chr7  110669594      110935001  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0   chr1  187237710      187339730  NR_126347  LINC01036
1  chr11  108465290      108659621  NM_004398      DDX10,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143640860      143784862  NM_001123068       PPIAL4G
1    chr1  143640860      143784862     NR_104014     LINC01138
2    chr1  143640860      143784862     NR_106967       MIR6077
3    chr1  143640860      143784862     NR_111930  LOC100132057
4   chr12   72713465       73010698     NM_013381         TRHDE
5   chr15   29774369       30057991  NM_001301025          TJP1
8   chr15   29774369       30057991     NM_015307      FAM189A1
9   chr15   29774369       30057991     NR_135221  LOC100130111
10   chr9   39069580       39329800     NM_033655       CNTNAP3
11   chr9   41486831       42946282  NM_001012419     ANKRD20A3
12   chr9   41486831       42946282  NM_001012421     ANKRD20A2
13   chr9   41486831       42946282  NM_001113541     SPATA31A5
14   chr9   41486831       42946282     NM_015667     SPATA31A7
15   chr9   41486831       42946282     NM_199244       FOXD4L4
16   chr9   41486831       42946282     NR_003528       ZNF658B
17   chr9   41486831       42946282     NR_003670        FGF7P3
18   chr9   41486831       42946282     NR_015363         GLIDR
19   chr9   41486831       42946282     NR_026558        AQP7P3
20   chr9   41486831       42946282     NR_026803       FAM74A1
21   chr9   41486831       42946282     NR_046175     LOC286297
22   chr9   41486831       42946282     NR_121570  LOC101928381
23   chr9   41486831       42946282     NR_121572      GXYLT1P3
26   chr9   41486831       42946282     NR_126048  LOC102724238
27   chr9   41486831       42946282     NR_126049     LOC554249
28   chr9   41486831       42946282     NR_135597  LOC101928195
29   chr9   41486831       42946282     NR_136299  LOC101929583
30   chr9   41486831       42946282     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145267551      145397809  NM_001277444         NBPF9
1    chr1  145267551      145397809  NM_001278267        NBPF20
2    chr1  145267551      145397809  NM_001302371        NBPF10
3    chr1  145267551      145397809     NM_203458      NOTCH2NL
4    chr1  145267551      145397809     NR_104217       NBPF25P
5    chr1  145267551      145397809     NR_125967  LOC101928979
6    chr1  245034400      245352240  NM_001143943        EFCAB2
8    chr1  245034400      245352240     NM_018012        KIF26B
10   chr1  245034400      245352240     NR_111907  LOC101928068
11  chr12   72685426       72797011     NM_013381         TRHDE
12  chr16   21774627       23449054     NM_000336        SCNN1B
13  chr16   21774627       23449054     NM_001039        SCNN1G
14  chr16   21774627       23449054  NM_001135865        NPIPB5
15  chr16   21774627       23449054  NM_001164579      C16orf52
16  chr16   21774627       23449054  NM_001258033        POLR3E
17  chr16   21774627       23449054  NM_001310148        NPIPB4
18  chr16   21774627       23449054     NM_001802          CDR2
19  chr16   21774627       23449054     NM_003366        UQCRC2
20  chr16   21774627       23449054     NM_006043        HS3ST2
21  chr16   21774627       23449054     NM_013302         EEF2K
22  chr16   21774627       23449054     NM_020718         USP31
23  chr16   21774627       23449054     NM_153603          COG7
24  chr16   21774627       23449054     NM_173615         VWA3A
25  chr16   21774627       23449054     NM_173806         PDZD9
26  chr16   21774627       23449054     NR_003370        RRN3P1
27  chr16   21774627       23449054     NR_003676     LOC653786
28  chr16   21774627       23449054     NR_027154        SMG1P1
29  chr16   21774627       23449054     NR_027460        RRN3P3
30  chr16   21774627       23449054     NR_136333       MFSD13B
31  chr18   67766684       68051106  NM_001318520          RTTN
32  chr18   67766684       68051106     NM_004232         SOCS6
33  chr18   67766684       68051106     NR_110764  LOC101060542
34  chr18   67766684       68051106     NR_126336  LOC101927481
35   chr2  134024274      134130040     NM_207363        NCKAP5
36   chr2  134024274      134130040     NR_110294  LOC101928161
37   chr2  242451583      242565306  NM_001164356         THAP4
39   chr2  242451583      242565306     NM_032515           BOK
40   chr2  242451583      242565306     NR_033346       BOK-AS1
41   chr8  103970115      104272407     NM_001695      ATP6V1C1
42   chr8  103970115      104272407     NM_024812         BAALC
43   chr8  103970115      104272407     NR_027071     BAALC-AS2
44   chr8  103970115      104272407     NR_036106       MIR3151
45   chr8  103970115      104272407     NR_109954     BAALC-AS1
46   chr8  103970115      104272407     NR_126339     AZIN1-AS1
47   chr8  111237563      112011640     NR_125416     LINC01608,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    2008215        2118260     NR_040253     LINC00700
1   chr10    2008215        2118260     NR_106720       MIR6072
2   chr14   45692136       45831314     NM_018353      MIS18BP1
3   chr22   20651618       20773042  NM_001256523         ZNF74
4   chr22   20651618       20773042     NR_136569     LOC729461
5   chr22   20651618       20773042     NR_136572  LOC101927859
6    chr9   28624359       31286564  NM_001258282        LINGO2
8    chr9   28624359       31286564     NR_030597        MIR876
9    chr9   28624359       31286564     NR_030618        MIR873
10   chr9   28624359       31286564     NR_046204     LINC01242,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3  118724616      118890975  NM_001015887    IGSF11
2  chr3  118724616      118890975     NM_152539   C3orf30
3  chr7  110343642      110576370  NM_001244606    IMMP2L
5  chr7  110447312      110554589  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56498356       56621617  NM_001142770        PCDH15
3   chr16   21518696       21660275  NM_001077180        METTL9
5   chr16   21518696       21660275     NM_005849         IGSF6
6   chr16   21518696       21660275     NR_002594      SLC7A5P2
7   chr16   21518696       21660275     NR_110930  LOC101927814
8    chr2   95462617       95701303     NM_022439           MAL
9    chr2   95462617       95701303     NM_144705         TEKT4
10   chr2   95462617       95701303     NR_003366    ANKRD20A8P
11   chr2   95462617       95701303     NR_037597     LOC442028
12   chr4   69320995       69604488     NM_001076       UGT2B15
13   chr4   69320995       69604488     NM_001077       UGT2B17
14   chr4   69320995       69604488     NM_014058     TMPRSS11E,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr6   89402584       89915324  NM_001010853    PM20D2
1  chr6   89402584       89915324  NM_001256703    GABRR1
3  chr6   89402584       89915324  NM_001286428     RNGTT
4  chr6   89402584       89915324     NM_006813     PNRC1
5  chr6   89402584       89915324     NM_080743    SRSF12,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   80807356       80978145  NM_001318536         SPRY2
3   chr15   28655958       28958699  NM_001282468       GOLGA8M
4   chr15   28655958       28958699     NR_033351       GOLGA8F
5   chr15   28655958       28958699     NR_033353       GOLGA8G
6   chr15   28655958       28958699     NR_036443       HERC2P9
7   chr15   28655958       28958699     NR_039734     MIR4509-3
9   chr22   20141485       20744389  NM_001242313      TMEM191B
10  chr22   20141485       20744389     NM_015672        RIMBP3
11  chr22   20141485       20744389     NM_023004         RTN4R
12  chr22   20141485       20744389     NM_033257        DGCR6L
13  chr22   20141485       20744389     NR_003563       PI4KAP1
14  chr22   20141485       20744389     NR_026919     LINC00896
15  chr22   20141485       20744389     NR_031618       MIR1286
16  chr22   20141485       20744389     NR_038460     LOC284865
17  chr22   20141485       20744389     NR_136560       FAM230A
18  chr22   20141485       20744389     NR_136569     LOC729461
19  chr22   20141485       20744389     NR_136572  LOC101927859,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  245051143      245197622  NM_001143943        EFCAB2
3  chr1  245051143      245197622     NR_111907  LOC101928068
4  chr4   69261815       69417517     NM_001077       UGT2B17
5  chr4   69261815       69417517     NM_014058     TMPRSS11E
6  chr4  182043695      182272428     NR_033918     LINC00290,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   99892227      100025067  NM_001284400        LRRC28
2    chr2   51168773       51426242  NM_001330079         NRXN1
5    chr2   51168773       51426242     NR_135237     LOC730100
6   chr22   19907196       20776053     NM_000754          COMT
9   chr22   19907196       20776053  NM_001190326         DGCR8
10  chr22   19907196       20776053  NM_001242313      TMEM191B
11  chr22   19907196       20776053  NM_001243537       CCDC188
12  chr22   19907196       20776053  NM_001256523         ZNF74
13  chr22   19907196       20776053  NM_001278639        RANBP1
16  chr22   19907196       20776053  NM_001282512        TXNRD2
17  chr22   19907196       20776053  NM_001283116        TANGO2
20  chr22   19907196       20776053     NM_001670         ARVCF
23  chr22   19907196       20776053     NM_013373        ZDHHC8
24  chr22   19907196       20776053     NM_015672        RIMBP3
25  chr22   19907196       20776053     NM_022727        TRMT2A
26  chr22   19907196       20776053     NM_023004         RTN4R
27  chr22   19907196       20776053     NM_033257        DGCR6L
28  chr22   19907196       20776053     NR_003563       PI4KAP1
29  chr22   19907196       20776053     NR_026919     LINC00896
30  chr22   19907196       20776053     NR_029706        MIR185
31  chr22   19907196       20776053     NR_031618       MIR1286
32  chr22   19907196       20776053     NR_031706       MIR1306
33  chr22   19907196       20776053     NR_037412       MIR3618
34  chr22   19907196       20776053     NR_038460     LOC284865
35  chr22   19907196       20776053     NR_039918       MIR4761
36  chr22   19907196       20776053     NR_106874       MIR6816
37  chr22   19907196       20776053     NR_136560       FAM230A
38  chr22   19907196       20776053     NR_136569     LOC729461
39  chr22   19907196       20776053     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15  100158634      101684333  NM_001040616         LINS1
1   chr15  100158634      101684333  NM_001130928         MEF2A
2   chr15  100158634      101684333  NM_001284417        LYSMD4
4   chr15  100158634      101684333  NM_001290341         CERS3
7   chr15  100158634      101684333  NM_001293815       ALDH1A3
9   chr15  100158634      101684333     NM_024652         LRRK1
10  chr15  100158634      101684333     NM_024708          ASB7
11  chr15  100158634      101684333     NM_139057      ADAMTS17
13  chr15  100158634      101684333     NR_003260       DNM1P46
14  chr15  100158634      101684333     NR_028139       SPATA41
16  chr15  100158634      101684333     NR_073405        PRKXP1
17  chr15  100158634      101684333     NR_120374     CERS3-AS1
18  chr15  100158634      101684333     NR_135693  LOC102723335
19  chr15  100158634      101684333     NR_135737     LOC400464
20  chr15  100158634      101684333     NR_135827  LOC101927751
22  chr17   47913907       48037947  NM_001077503          TAC4
23  chr17   47913907       48037947  NM_001242791      FLJ45513,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14680690       15150367     NM_080676      MACROD2
1  chr20   14680690       15150367     NR_037841  MACROD2-AS1
3   chr7   19667433       19840173  NM_001002926      TWISTNB
4   chr7   19667433       19840173     NM_152774      TMEM196
5   chr7   19667433       19840173     NR_036101      MIR3146,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   28123265       28236988     NM_000275       OCA2
2  chr19   21684485       21818318  NM_001001415     ZNF429
3  chr19   21684485       21818318     NR_037194  LINC00664,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  135198859      135343494     NM_000773        CYP2E1
1   chr10  135198859      135343494  NM_001012508          SPRN
2   chr10  135198859      135343494     NM_138384          MTG1
3   chr10  135198859      135343494     NR_002934        SCART1
4   chr10  135198859      135343494     NR_109766          PAOX
5    chr9   41901757       42149245     NR_003670        FGF7P3
6    chr9   41901757       42149245     NR_015363         GLIDR
9    chr9   41901757       42149245     NR_126048  LOC102724238
10   chr9   41901757       42149245     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   63511989       63683488  NM_001039469      MARK2
1   chr11   63511989       63683488  NM_001144936   C11orf95
2   chr11   63511989       63683488  NM_001265591       RTN3
4   chr11   63511989       63683488     NM_138471   C11orf84
5   chr11   63511989       63683488     NM_173587      RCOR2
6   chr12   16181413       16282194  NM_001300779       DERA
7   chr16   21822109       22116094  NM_001164579   C16orf52
8   chr16   21822109       22116094  NM_001310148     NPIPB4
9   chr16   21822109       22116094     NM_003366     UQCRC2
10  chr16   21822109       22116094     NM_173615      VWA3A
11  chr16   21822109       22116094     NM_173806      PDZD9
12  chr16   21822109       22116094     NR_003370     RRN3P1
13   chr4   98362816       98472543     NR_102713  STPG2-AS1
14   chr4  169267287      169550258  NM_001012967     DDX60L
15   chr4  169267287      169550258  NM_001166108      PALLD
17   chr9   41841883       41965825     NR_003670     FGF7P3
18   chr9   41841883       41965825     NR_015363      GLIDR,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr19   47841549       47953699  NM_001009813     MEIS3
1  chr19   47841549       47953699  NM_001271749     C5AR2
5  chr19   47841549       47953699     NM_014681     DHX34
6  chr19   47841549       47953699     NM_015063    SLC8A2
8   chr5  161127980      161235194     NM_000811    GABRA6
9   chr6  129192058      129321923  NM_001079823     LAMA2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   38947246       39076237     NR_045000      ACTR3BP5
1   chr11  134274803      136819078     NM_054025        B3GAT1
2   chr11  134274803      136819078     NR_033852     LOC283177
3   chr11  134274803      136819078     NR_135050  LOC100507548
4   chr14   61776278       62157379     NM_006255         PRKCH
5   chr14   61776278       62157379     NR_039985      FLJ22447
6   chr14   61776278       62157379     NR_047116     HIF1A-AS1
7   chr14   61776278       62157379     NR_110416  LOC101927780
9    chr9   28591203       28887708  NM_001258282        LINGO2
11   chr9   28591203       28887708     NR_030597        MIR876, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145330392      146336589  NM_001012758        NUDT17
1    chr1  145330392      146336589  NM_001039888      ANKRD34A
2    chr1  145330392      146336589  NM_001097612        GPR89A
3    chr1  145330392      146336589  NM_001101663        NBPF11
4    chr1  145330392      146336589  NM_001184795        PEX11B
5    chr1  145330392      146336589  NM_001201325         PDZK1
6    chr1  145330392      146336589  NM_001277444         NBPF9
7    chr1  145330392      146336589  NM_001278267        NBPF20
8    chr1  145330392      146336589  NM_001280799       ANKRD35
9    chr1  145330392      146336589  NM_001302371        NBPF10
10   chr1  145330392      146336589  NM_001303040        ITGA10
11   chr1  145330392      146336589  NM_001303456        POLR3C
12   chr1  145330392      146336589  NM_001313972         TXNIP
14   chr1  145330392      146336589     NM_005105         RBM8A
15   chr1  145330392      146336589     NM_006099         PIAS3
18   chr1  145330392      146336589     NM_007053         CD160
19   chr1  145330392      146336589     NM_014455        RNF115
20   chr1  145330392      146336589     NM_032305       POLR3GL
21   chr1  145330392      146336589     NM_145277          HFE2
22   chr1  145330392      146336589     NM_153713         LIX1L
23   chr1  145330392      146336589     NR_002328        GNRHR2
27   chr1  145330392      146336589     NR_104217       NBPF25P
29   chr1  145330392      146336589     NR_106794       MIR6736
31   chr1  145330392      146336589     NR_111936       PDZK1P1
32   chr1  145330392      146336589     NR_125967  LOC101928979
33   chr1  145330392      146336589     NR_135559  LOC100505824
34  chr10   55840872       56002754  NM_001142770        PCDH15
37  chr15   28651192       28797557     NR_033351       GOLGA8F
38  chr15   28651192       28797557     NR_033353       GOLGA8G
39  chr15   28651192       28797557     NR_039734     MIR4509-3
41   chr7   14826918       15264976  NM_001004320          AGMO
42   chr7   14826918       15264976     NM_004080          DGKB
44   chr7  143053712      143197423  NM_001278297       FAM131B
45   chr7  143053712      143197423  NM_001322263  LOC100507507
46   chr7  143053712      143197423     NM_003461           ZYX
47   chr7  143053712      143197423     NM_005232         EPHA1
49   chr7  143053712      143197423     NM_176883       TAS2R41
50   chr7  143053712      143197423     NM_177437       TAS2R60
51   chr7  143053712      143197423     NR_033897     EPHA1-AS1
52   chr7  143053712      143197423     NR_106952       MIR6892
53   chr9   41479770       41879346  NM_001113541     SPATA31A5
54   chr9   41479770       41879346     NM_015667     SPATA31A7
55   chr9   41479770       41879346     NR_003528       ZNF658B
56   chr9   41479770       41879346     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   27595833       28047198  NM_001034842    PTCHD3
1   chr10   27595833       28047198  NM_001242702       MKX
2   chr10   27595833       28047198  NM_001256411     RAB18
3   chr10   27595833       28047198     NR_121652   MKX-AS1
4   chr10   27595833       28047198     NR_138082   ARMC4P1
5    chr4   71340574       71962093     NM_000788       DCK
6    chr4   71340574       71962093  NM_001037442     RUFY3
7    chr4   71340574       71962093  NM_001098477     GRSF1
9    chr4   71340574       71962093  NM_001145006      MUC7
11   chr4   71340574       71962093  NM_001244766     MOB1B
13   chr4   71340574       71962093  NM_001286731      AMTN
18   chr4   71340574       71962093     NM_016519      AMBN
19   chr4   71340574       71962093     NM_020368      UTP3
20   chr4   71340574       71962093     NM_031889      ENAM
21   chr4   71340574       71962093     NM_144646    JCHAIN
23   chr7   64104981       64361154  NM_001160183    ZNF138
24   chr7   64104981       64361154  NM_001282360    ZNF107
27   chr7   64104981       64361154     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81481095       82831453     NM_000429         MAT1A
1   chr10   81481095       82831453  NM_001012973         PLAC9
2   chr10   81481095       82831453  NM_001128309       TSPAN14
3   chr10   81481095       82831453  NM_001145719        SH2D4B
4   chr10   81481095       82831453  NM_001243778       FAM213A
7   chr10   81481095       82831453  NM_001269053         DYDC1
8   chr10   81481095       82831453  NM_001270041         DYDC2
10  chr10   81481095       82831453  NM_001270367       TMEM254
13  chr10   81481095       82831453  NM_001278407        ANXA11
16  chr10   81481095       82831453     NM_003019         SFTPD
19  chr10   81481095       82831453     NR_002724         MBL1P
20  chr10   81481095       82831453     NR_027431   TMEM254-AS1
21  chr10   81481095       82831453     NR_029407     LOC642361
22  chr10   81481095       82831453     NR_033857       BMS1P21
23  chr10   81481095       82831453     NR_038464     LINC00857
24  chr10   81481095       82831453     NR_120611    NUTM2B-AS1
27  chr10   81481095       82831453     NR_120661  LOC101929574
28  chr10   81481095       82831453     NR_120662  LOC102723703
29  chr10   81481095       82831453     NR_136612  LOC100130698
31  chr21   23037285       23259000     NR_038872     LINC00317
32  chr21   23037285       23259000     NR_109958     LINC01425
33   chr9   38971916       39120663     NM_033655       CNTNAP3,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr2   35689682       35854047  NR_039629  MIR548AD,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   68036040       68148194  NM_001127384    CTNNA3
2   chr6  162521356      162647092     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr18   40164737       40439645     NM_002930          RIT2
1   chr18   40164737       40439645     NR_046174     LINC00907
2   chr18   61766699       61895657     NR_027245     LINC00305
3   chr18   61766699       61895657     NR_033881     LOC284294
4   chr18   61766699       61895657     NR_033983     LINC01538
5   chr22   17180177       17399951     NM_175878          XKR3
6   chr22   17180177       17399951     NR_003607       HSFY1P1
7   chr22   17180177       17399951     NR_134584  LOC101929350
8   chr22   19930222       20053693     NM_000754          COMT
11  chr22   19930222       20053693  NM_001283116        TANGO2
14  chr22   19930222       20053693     NM_001670         ARVCF
16  chr22   19930222       20053693     NR_029706        MIR185
17  chr22   19930222       20053693     NR_039918       MIR4761
18   chr9   17218831       17321756  NM_001114395         CNTLN,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr7   57240170       57469389  NR_030766       GUSBP10
1  chr7   57240170       57469389  NR_136269  LOC105375297,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   81508636       81871962  NM_001270367      TMEM254
3   chr10   81508636       81871962     NM_003019        SFTPD
4   chr10   81508636       81871962     NR_002724        MBL1P
5   chr10   81508636       81871962     NR_027431  TMEM254-AS1
6   chr10   81508636       81871962     NR_029407    LOC642361
7   chr10   81508636       81871962     NR_033857      BMS1P21
8   chr10   81508636       81871962     NR_120611   NUTM2B-AS1
11  chr14   38223958       38340325  NM_001310135         TTC6
12   chr4  118799562      119034247     NM_004784        NDST3,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr11  104549768      104763231     NR_034064       CASP12
1   chr2   50784402       50920166  NM_001330082        NRXN1
2  chr20   14481789       14702346     NM_080676      MACROD2
3  chr20   14481789       14702346     NR_104193  MACROD2-IT1,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr21   17898770       18137683  NR_027790  MIR99AHG
2  chr21   17898770       18137683  NR_029480  MIRLET7C
3  chr21   17898770       18137683  NR_029514    MIR99A
4  chr21   17898770       18137683  NR_029694  MIR125B2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  132072001      132239905  NM_001261411        SFSWAP
1   chr22   17179733       17320686     NM_175878          XKR3
2   chr22   17179733       17320686     NR_003607       HSFY1P1
3   chr22   17179733       17320686     NR_134584  LOC101929350
4   chr22   20075629       20260997  NM_001190326         DGCR8
5   chr22   20075629       20260997  NM_001243537       CCDC188
6   chr22   20075629       20260997  NM_001278639        RANBP1
9   chr22   20075629       20260997     NM_013373        ZDHHC8
10  chr22   20075629       20260997     NM_022727        TRMT2A
11  chr22   20075629       20260997     NM_023004         RTN4R
12  chr22   20075629       20260997     NR_026919     LINC00896
13  chr22   20075629       20260997     NR_031618       MIR1286
14  chr22   20075629       20260997     NR_038460     LOC284865
15  chr22   20075629       20260997     NR_106874       MIR6816
16   chr4   94115383       95463696  NM_001011516        PDLIM5
17   chr4   94115383       95463696  NM_001128429      SMARCAD1
22   chr4   94115383       95463696     NM_001510         GRID2
23   chr4   94115383       95463696     NM_005172         ATOH1
24   chr4   94115383       95463696     NM_014485         HPGDS
26   chr4   94115383       95463696     NR_125922  LOC101929210,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr6   89438584       89720987  NM_001286428         RNGTT
1  chr8      41332         173124  NM_001005504        OR4F21
2  chr8      41332         173124     NR_003572     RPL23AP53
3  chr9   41862493       42074669     NR_003670        FGF7P3
4  chr9   41862493       42074669     NR_015363         GLIDR
7  chr9   41862493       42074669     NR_126048  LOC102724238
8  chr9   41862493       42074669     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245048158      245293771  NM_001143943        EFCAB2
3    chr1  245048158      245293771     NR_111907  LOC101928068
4   chr14   55672481       56007017     NM_014924         ATG14
5   chr14   55672481       56007017     NM_017943        FBXO34
7   chr14   55672481       56007017     NM_199047         TBPL2
8   chr15   20992640       21136672  NM_001277303        POTEB2
9   chr15   20992640       21136672     NM_207355        POTEB3
10  chr15   20992640       21136672     NR_028506         NF1P2
11  chr15   20992640       21136672     NR_036062     MIR3118-2
13  chr16   83072056       83502948  NM_001220488         CDH13
15  chr21   28097638       28263743     NM_006988       ADAMTS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   84068563       84170097  NM_001142699          DLG2
2   chr16   16459545       16632649  NM_001282511        NPIPA8
3   chr16   16459545       16632649     NR_106971     MIR6511A4
4   chr16   72597443       73045414  NM_001164766         ZFHX3
6   chr16   72597443       73045414     NR_126330     LINC01572
7    chr3  176599559      178089637  NM_001321193       TBL1XR1
9    chr3  176599559      178089637     NR_047465     LINC00501
10   chr3  176599559      178089637     NR_047568     LINC00578
11   chr3  176599559      178089637     NR_110826      KCCAT211
12   chr9   72304303       72587274  NM_001010940      C9orf135
13   chr9   72304303       72587274  NM_001099666         PTAR1
14   chr9   72304303       72587274     NR_038833  C9orf135-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr13   80812577       80924027  NM_001318536     SPRY2
3  chr18   63487410       63623174  NM_001317214      CDH7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   19941285       20057777     NM_000754          COMT
3   chr22   19941285       20057777  NM_001283116        TANGO2
6   chr22   19941285       20057777     NM_001670         ARVCF
8   chr22   19941285       20057777     NR_029706        MIR185
9   chr22   19941285       20057777     NR_039918       MIR4761
10   chr7    6915688        7214289     NR_034022  LOC100131257
11   chr7    6915688        7214289     NR_037454       MIR3683,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   75855052       75981219  NM_001201334     GCFC2
3  chr2   75855052       75981219     NM_014763    MRPL19,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10  117312599      117429270     NM_207303        ATRNL1
1  chr11   95790423       95920467     NM_032427         MAML2
2   chr2   51682376       52160959     NR_135237     LOC730100
3   chr6  128621087      128741654  NM_001291982         PTPRK
5   chr9   67570601       67831846     NR_027422        FAM27B
6   chr9   67570601       67831846     NR_103833       FAM27E3
7   chr9   67570601       67831846     NR_121606  LOC102723709
8   chr9   67570601       67831846     NR_144466  LOC105379807,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr4   69242255       69366197  NM_014058     TMPRSS11E
1  chr7    9425296       10982982  NM_002489        NDUFA4
2  chr7    9425296       10982982  NR_002790          PER4
3  chr9   44309564       44500962  NR_121564  LOC101927827
4  chr9   44309564       44500962  NR_126050  LOC103908605,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10  135213910      135376631     NM_000773        CYP2E1
1  chr10  135213910      135376631  NM_001012508          SPRN
2  chr10  135213910      135376631  NM_001143763         SYCE1
5  chr10  135213910      135376631     NM_138384          MTG1
6  chr10  135213910      135376631     NR_002934        SCART1
7   chr4   69234283       69357446     NM_014058     TMPRSS11E
8   chr4  130510415      130864992     NR_110753  LOC101927282
9   chr9   39135928       39246129     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   27612031       27797882  NM_001034842       PTCHD3
1   chr10   27612031       27797882  NM_001256411        RAB18
2   chr10   27612031       27797882     NR_138082      ARMC4P1
3   chr11   67252579       67378187     NM_000852        GSTP1
4   chr11   67252579       67378187  NM_001166102       NDUFV1
5   chr11   67252579       67378187  NM_001302959          AIP
6   chr11   67252579       67378187  NM_001318496        CABP2
8   chr11   67252579       67378187     NM_004910      PITPNM1
9   chr11   67252579       67378187     NM_005851      CDK2AP2
11  chr11   67252579       67378187     NR_106810      MIR6752
12  chr11   67252579       67378187     NR_130935     C11orf72
13  chr12   72631773       72801811     NM_013381        TRHDE
14  chr12   72631773       72801811     NR_026836    TRHDE-AS1
16  chr15   87289156       87437903     NM_152336        AGBL1
17   chr2   25194383       25336742  NM_001198559      DNAJC27
18   chr2   25194383       25336742  NM_001319099        EFR3B
20   chr2   25194383       25336742     NR_034113  DNAJC27-AS1
21  chr21   17843067       18049056     NR_027790     MIR99AHG
23  chr21   17843067       18049056     NR_029480     MIRLET7C
24  chr21   17843067       18049056     NR_029514       MIR99A
25  chr21   17843067       18049056     NR_029694     MIR125B2
34   chr3     594062         721437     NR_110118    LINC01266
35   chr5  109769447      109931044  NM_001039763      TMEM232
36   chr5  109769447      109931044     NR_031644     MIR548F3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12816349       13008303  NM_001009611    PRAMEF4
1    chr1   12816349       13008303  NM_001010889    PRAMEF6
2    chr1   12816349       13008303  NM_001010890    PRAMEF9
3    chr1   12816349       13008303  NM_001012276    PRAMEF8
4    chr1   12816349       13008303  NM_001013631   HNRNPCL1
5    chr1   12816349       13008303  NM_001080830   PRAMEF12
6    chr1   12816349       13008303  NM_001146181   HNRNPCL3
7    chr1   12816349       13008303  NM_001146344   PRAMEF11
8    chr1   12816349       13008303  NM_001294139    PRAMEF1
9    chr1   12816349       13008303  NM_001302551   HNRNPCL4
11   chr1   12816349       13008303     NM_023014    PRAMEF2
12   chr1   12816349       13008303     NM_152290   C1orf158
13   chr1   12808749       12923880  NM_001013631   HNRNPCL1
14   chr1   12808749       12923880  NM_001080830   PRAMEF12
15   chr1   12808749       12923880  NM_001146181   HNRNPCL3
16   chr1   12808749       12923880  NM_001146344   PRAMEF11
17   chr1   12808749       12923880  NM_001294139    PRAMEF1
18   chr1   12808749       12923880  NM_001302551   HNRNPCL4
20   chr1   12808749       12923880     NM_023014    PRAMEF2
21   chr1   12808749       12923880     NM_152290   C1orf158
22  chr14   39057829       39251282     NR_039982  LINC00639
23   chr2   35685394       35832793     NR_039629   MIR548AD
24   chr6    5177331        5336887  NM_001164840      LYRM4
26   chr6    5177331        5336887  NM_001318872      FARS2
29   chr6    5177331        5336887     NR_126015  LYRM4-AS1
31   chr8   97710672       97829758     NM_016134        CPQ,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr5   93412936       93554372  NM_001145678  KIAA0825
1  chr5   93412936       93554372  NM_001163418   FAM172A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12777233       12932666  NM_001013631      HNRNPCL1
1    chr1   12777233       12932666  NM_001080830      PRAMEF12
2    chr1   12777233       12932666  NM_001103170       AADACL3
3    chr1   12777233       12932666  NM_001146181      HNRNPCL3
4    chr1   12777233       12932666  NM_001146344      PRAMEF11
5    chr1   12777233       12932666  NM_001294139       PRAMEF1
6    chr1   12777233       12932666  NM_001302551      HNRNPCL4
8    chr1   12777233       12932666     NM_023014       PRAMEF2
9    chr1   12777233       12932666     NM_152290      C1orf158
10   chr1  220055990      220302341  NM_001286151         BPNT1
11   chr1  220055990      220302341     NM_004446          EPRS
12   chr1  220055990      220302341     NM_018060         IARS2
13   chr1  220055990      220302341     NR_002753       RNU5F-1
14   chr1  220055990      220302341     NR_029628        MIR215
15   chr1  220055990      220302341     NR_029711      MIR194-1
16   chr1  220055990      220302341     NR_046437      SLC30A10
17  chr14   37542665       37681843  NM_001171170      SLC25A21
18  chr14   37542665       37681843  NM_001195296        MIPOL1
19  chr14   37542665       37681843     NR_033240  SLC25A21-AS1
20  chr15   98201820       98362351     NR_024172     LINC00923
21   chr2   50820210       50946581  NM_001330082         NRXN1
22   chr2   50820210       50946581     NR_130470       MIR8485
23   chr6   90998408       91128067  NM_001170794         BACH2
24   chr6   90998408       91128067     NR_039671       MIR4464,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145287511      145696807  NM_001012758        NUDT17
1    chr1  145287511      145696807  NM_001039888      ANKRD34A
2    chr1  145287511      145696807  NM_001184795        PEX11B
3    chr1  145287511      145696807  NM_001277444         NBPF9
4    chr1  145287511      145696807  NM_001278267        NBPF20
5    chr1  145287511      145696807  NM_001280799       ANKRD35
6    chr1  145287511      145696807  NM_001302371        NBPF10
7    chr1  145287511      145696807  NM_001303040        ITGA10
8    chr1  145287511      145696807  NM_001303456        POLR3C
9    chr1  145287511      145696807  NM_001313972         TXNIP
11   chr1  145287511      145696807     NM_005105         RBM8A
12   chr1  145287511      145696807     NM_006099         PIAS3
15   chr1  145287511      145696807     NM_007053         CD160
16   chr1  145287511      145696807     NM_014455        RNF115
17   chr1  145287511      145696807     NM_032305       POLR3GL
18   chr1  145287511      145696807     NM_145277          HFE2
19   chr1  145287511      145696807     NM_153713         LIX1L
20   chr1  145287511      145696807     NR_002328        GNRHR2
24   chr1  145287511      145696807     NR_104217       NBPF25P
25   chr1  145287511      145696807     NR_106794       MIR6736
26   chr1  145287511      145696807     NR_125967  LOC101928979
27  chr14   47836142       48005254  NM_001113498         MDGA2
28  chr15  100152520      100282778  NM_001130928         MEF2A
29  chr15  100152520      100282778  NM_001284417        LYSMD4
32   chr5   12423759       12697481     NR_033383     LINC01194
33   chr5   12423759       12697481     NR_039659       MIR4454,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr17    5589786        6235088     NM_015253      WSCD1
1   chr17    5589786        6235088     NR_040000  LOC339166
2   chr17   29400238       29525026     NM_000267        NF1
4   chr17   29400238       29525026     NR_039886    MIR4733
5    chr4   71335515       71551590  NM_001145006       MUC7
7    chr4   71335515       71551590  NM_001286731       AMTN
8    chr4   71335515       71551590     NM_016519       AMBN
9    chr4   71335515       71551590     NM_031889       ENAM
10   chr4   71335515       71551590     NM_144646     JCHAIN
12   chr7  110765195      110915881  NM_001099658      LRRN3
13   chr7  110765195      110915881  NM_001244606     IMMP2L,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr14   26991832       27117272  NM_002515     NOVA1
2   chr7  117502301      118031765  NM_016200      LSM8
3   chr7  117502301      118031765  NM_019644    ANKRD7
4   chr7  117502301      118031765  NM_033427   CTTNBP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63359233       63461435     NR_047029     LINC00448
3   chr13   71760672       72095648     NM_080759         DACH1
4    chr2   97168252       97312622  NM_001115016        KANSL3
5    chr2   97168252       97312622  NM_001285485        NEURL3
6    chr2   97168252       97312622  NM_001293083        FER1L5
7    chr2   97168252       97312622  NM_001319085        ARID5A
11   chr2   97168252       97312622     NR_135564  LOC105373496
12   chr7   82841569       83394436  NM_001178129        SEMA3E
14   chr7  124934154      125764369     NR_110188  LOC101928283,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18295720       18435098  NM_001282511        NPIPA8
1   chr7   68675778       69096930  NM_001127231         AUTS2
3   chr7   68675778       69096930     NR_108105  LOC100507468,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr20    2949503        3051316  NM_002836         PTPRA
1  chr20    2949503        3051316  NM_030811        MRPS26
4  chr20    2949503        3051316  NM_178332         GNRH2
5   chr4   11788752       12225249  NR_125910  LOC101929019
6   chr6  120235969      120551292  NR_036098       MIR3144
7   chr8    2035621        2142554  NM_003970         MYOM2,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3  131242826      131480930  NM_001289112     CPNE4
3  chr5  146409466      146543266  NM_001271899   PPP2R2B,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr6   97392885       97545838  NM_001286251    KLHL32
4   chr6   97392885       97545838     NR_031679  MIR548H3
5   chr7   75349297       75531843  NM_001040457    RHBDD2
6   chr7   75349297       75531843  NM_001243198      HIP1
7   chr7   75349297       75531843     NM_002991     CCL24
8   chr7   75349297       75531843     NM_006072     CCL26
9   chr7  153833133      153962762  NM_001039350      DPP6
12  chr8  135664850      135813585  NM_001174158      ZFAT
14  chr8  135664850      135813585     NR_029666    MIR30B,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   55821980       56185306  NM_001142770    PCDH15
3   chr2   24978414       25114359  NM_001013663    PTRHD1
4   chr2   24978414       25114359  NM_001320613     ADCY3
5   chr2   24978414       25114359  NM_001322101     CENPO
6   chr2   24978414       25114359     NM_003743     NCOA1
7   chr9    6604672        6882797     NM_000170      GLDC
8   chr9    6604672        6882797  NM_001146695     KDM4C,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr21   40099037       40315774  NM_001256295          ETS2
2   chr21   40099037       40315774     NR_027065     LINC00114
5   chr21   40099037       40315774     NR_109926  LOC101928398
6   chr21   40099037       40315774     NR_120405     LOC400867
7    chr9   11976349       13297704     NM_000550         TYRP1
8    chr9   11976349       13297704  NM_001261407          MPDZ
10   chr9   11976349       13297704     NM_203403       LURAP1L
11   chr9   11976349       13297704     NR_125775   LURAP1L-AS1
12   chr9   11976349       13297704     NR_132976      SNORD137,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  142469742      142939419     NR_046228  ANKRD20A12P
1   chr11   20810377       20916770  NM_001288713        NELL1
2   chr16    6998083        7111273  NM_001142334       RBFOX1
5   chr19    1844754        1984255  NM_001130111      ABHD17A
6   chr19    1844754        1984255     NM_001319      CSNK1G2
7   chr19    1844754        1984255  NM_001329539       SCAMP4
8   chr19    1844754        1984255     NM_020695        REXO1
9   chr19    1844754        1984255     NM_031918        KLF16
10  chr19    1844754        1984255     NM_138422        ADAT3
11  chr19    1844754        1984255     NR_033400  CSNK1G2-AS1,   chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr8  124906522      125077837  NM_001039112      FER1L6
1  chr8  124906522      125077837     NR_040044  FER1L6-AS1
2  chr8  124906522      125077837     NR_103547  FER1L6-AS2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr3   24581428       25244447  NM_001290216         RARB
1   chr3  155994698      156226781  NM_001308217       KCNAB1
6   chr3  155994698      156226781     NR_046618   KCNAB1-AS1
7   chr7  110624991      110777054  NM_001099658        LRRN3
8   chr7  110624991      110777054  NM_001244606       IMMP2L
10  chr9    4458888        5835285  NM_001039395      SPATA6L
11  chr9    4458888        5835285  NM_001135920         RIC1
12  chr9    4458888        5835285  NM_001199853          AK3
16  chr9    4458888        5835285  NM_001286699         RCL1
18  chr9    4458888        5835285  NM_001314029        CD274
19  chr9    4458888        5835285  NM_001322194         JAK2
22  chr9    4458888        5835285  NM_001329191         RLN2
23  chr9    4458888        5835285     NM_002195        INSL4
24  chr9    4458888        5835285     NM_004170       SLC1A1
27  chr9    4458888        5835285     NM_006911         RLN1
28  chr9    4458888        5835285     NM_007179        INSL6
31  chr9    4458888        5835285     NM_017913      CDC37L1
32  chr9    4458888        5835285     NM_018465       PLGRKT
33  chr9    4458888        5835285     NM_024896        ERMP1
34  chr9    4458888        5835285     NM_025239     PDCD1LG2
35  chr9    4458888        5835285     NM_203453        PLPP6
36  chr9    4458888        5835285     NR_029836     MIR101-2
37  chr9    4458888        5835285     NR_121597  CDC37L1-AS1
38  chr9   28212995       28519266  NM_001258282       LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   14789616       15024339  NM_001277323        NPIPA3
2   chr16   14789616       15024339  NM_001277324        NPIPA2
4   chr16   14789616       15024339     NM_014287         NOMO1
5   chr16   14789616       15024339     NR_023387       ABCC6P2
6   chr16   14789616       15024339     NR_036140     MIR3179-1
7   chr16   14789616       15024339     NR_036141     MIR3180-1
8   chr16   14789616       15024339     NR_036142     MIR3180-2
9   chr16   14789616       15024339     NR_103772  LOC100288162
10  chr16   14789616       15024339     NR_106970     MIR6511A3
11  chr16   14789616       15024339     NR_128713     MIR3670-4
12  chr22   17185549       17285568     NM_175878          XKR3
13  chr22   17185549       17285568     NR_134584  LOC101929350, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr13   19683860       20077806  NM_001271850         TPTE2
1  chr13   19683860       20077806     NM_006001        TUBA3C
3  chr13   19683860       20077806     NR_027248     ANKRD26P3
4  chr13   19683860       20077806     NR_034026     LINC00421
7  chr13   19683860       20077806     NR_126054  LOC101928697
8   chr4  136819743      137080210     NR_103763     LINC00613
9   chr8  111911207      112056099     NR_125416     LINC01608,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  165230217      165466961  NM_001174069         LMX1A
1   chr1  165230217      165466961  NM_001256571          RXRG
4   chr1  165230217      165466961     NR_026744     LOC400794
6  chr11  131400038      131523264  NM_001048209           NTM
7  chr11  131400038      131523264     NR_110140  LOC101929653,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   55725704       55872622  NM_001142770    PCDH15,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   79070350       79190730  NM_001098816     TENM4
1   chr11   79070350       79190730     NR_030598    MIR708
2   chr11   79070350       79190730     NR_049841   MIR5579
3   chr12   57678504       57954383  NM_001080156   ARHGAP9
5   chr12   57678504       57954383  NM_001160045      GLI1
7   chr12   57678504       57954383  NM_001261412     DCTN2
9   chr12   57678504       57954383  NM_001330122    R3HDM2
10  chr12   57678504       57954383     NM_004083     DDIT3
11  chr12   57678504       57954383     NM_004984     KIF5A
12  chr12   57678504       57954383     NM_004990      MARS
13  chr12   57678504       57954383     NM_005538     INHBC
15  chr12   57678504       57954383     NM_031479     INHBE
17  chr12   57678504       57954383     NM_052897      MBD6
18  chr12   57678504       57954383     NR_030346    MIR616
19  chr12   57678504       57954383     NR_106816   MIR6758
20  chr17   29344290       29452491     NM_000267       NF1
22  chr17   29344290       29452491     NR_039886   MIR4733
23   chr7  110611298      110764664  NM_001099658     LRRN3
24   chr7  110611298      110764664  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   16608547       19086683  NM_001011722     ARHGEF10L
1   chr1   16608547       19086683  NM_001114600         SZRD1
2   chr1   16608547       19086683  NM_001135254          PAX7
3   chr1   16608547       19086683  NM_001136204          RCC2
4   chr1   16608547       19086683  NM_001145277        NECAP2
5   chr1   16608547       19086683  NM_001271733         MST1L
6   chr1   16608547       19086683  NM_001282321       FAM231A
8   chr1   16608547       19086683  NM_001310138       FAM231C
10  chr1   16608547       19086683  NM_001310155       FAM231B
13  chr1   16608547       19086683     NM_002403         MFAP2
14  chr1   16608547       19086683     NM_003000          SDHB
15  chr1   16608547       19086683     NM_007365         PADI2
16  chr1   16608547       19086683     NM_012387         PADI4
17  chr1   16608547       19086683     NM_013358         PADI1
19  chr1   16608547       19086683     NM_014675         CROCC
20  chr1   16608547       19086683     NM_016233         PADI3
22  chr1   16608547       19086683     NM_017940         NBPF1
25  chr1   16608547       19086683     NM_018994        FBXO42
26  chr1   16608547       19086683     NM_022089       ATP13A2
27  chr1   16608547       19086683     NM_030812         ACTL8
28  chr1   16608547       19086683     NM_032880        IGSF21
29  chr1   16608547       19086683     NM_152375       KLHDC7A
30  chr1   16608547       19086683     NM_198546       SPATA21
31  chr1   16608547       19086683     NM_207421         PADI6
32  chr1   16608547       19086683     NR_023386       CROCCP3
33  chr1   16608547       19086683     NR_026567         ESPNP
34  chr1   16608547       19086683     NR_026752       CROCCP2
35  chr1   16608547       19086683     NR_027504        MST1P2
36  chr1   16608547       19086683     NR_037446       MIR3675
39  chr1   16608547       19086683     NR_039768       MIR3972
40  chr1   16608547       19086683     NR_125946  LOC101927876
41  chr1   16608547       19086683     NR_135056  LOC105376805
43  chr1   16608547       19086683     NR_135764  LOC100132147
44  chr1   16608547       19086683     NR_135765     LOC440570
46  chr1   16608547       19086683     NR_135824  LOC102724562
48  chr1   76031356       76181711  NM_001130058       SLC44A5
52  chr4   69265000       69380595     NM_014058     TMPRSS11E
53  chr7   64087226       64262650  NM_001160183        ZNF138
54  chr7   64087226       64262650  NM_001282360        ZNF107
57  chr7   64087226       64262650     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11     729567         853452     NM_001004        RPLP2
1   chr11     729567         853452  NM_001025234       TSPAN4
4   chr11     729567         853452  NM_001039490        CD151
5   chr11     729567         853452  NM_001191060     SLC25A22
7   chr11     729567         853452  NM_001286606      CRACR2B
8   chr11     729567         853452  NM_001293167        PANO1
9   chr11     729567         853452  NM_001318824        PDDC1
11  chr11     729567         853452     NM_006755       TALDO1
12  chr11     729567         853452     NM_016564        CEND1
13  chr11     729567         853452     NM_020376       PNPLA2
14  chr11     729567         853452     NM_021128       POLR2L
16  chr11     729567         853452     NM_145886        PIDD1
17  chr11     729567         853452     NR_002585      SNORA52
18  chr11     729567         853452     NR_126342    LOC171391
19  chr12   81005913       81216834  NM_001145026        PTPRQ
20  chr12   81005913       81216834  NM_001324423        LIN7A
21  chr12   81005913       81216834     NM_002469         MYF6
22  chr12   81005913       81216834     NM_005593         MYF5
23  chr12   81005913       81216834     NR_120468    LINC01490
24  chr13   86045854       86147530     NR_046989    LINC00351
25  chr20   14702910       15142491     NM_080676      MACROD2
26  chr20   14702910       15142491     NR_037841  MACROD2-AS1
28   chr3  116067700      116177432  NM_001318915        LSAMP
29   chr3  116067700      116177432     NR_109998    LSAMP-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr17   14118644       14374839  NM_001007530    CDRT15
1  chr17   14118644       14374839     NM_006041  HS3ST3B1
2  chr17   14118644       14374839     NR_026880  MGC12916
3   chr7    6760906        6937879  NM_001099697  RSPH10B2
4   chr7    6760906        6937879     NM_198097     CCZ1B
5   chr7    6760906        6937879     NR_002217    PMS2CL
6   chr9  116741475      116849176  NM_001318041    ZNF618
7   chr9  116741475      116849176     NM_001633      AMBP,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   21296052       21463207  NM_001288713       NELL1
1   chr14   47759077       47895710  NM_001113498       MDGA2
4    chr9   30411948       32939617  NM_001195622      TOPORS
5    chr9   30411948       32939617  NM_001199987      NDUFB6
6    chr9   30411948       32939617  NM_001278352        ACO1
7    chr9   30411948       32939617     NM_014314       DDX58
8    chr9   30411948       32939617     NM_153809       TAF1L
9    chr9   30411948       32939617     NM_212558     TMEM215
10   chr9   30411948       32939617     NR_033991  TOPORS-AS1
13   chr9   30411948       32939617     NR_135134   LINC01243,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   14908987       15015531     NM_015209          KAZN
2   chr21   23440104       23692337     NR_038400     LINC00308
3   chr21   23440104       23692337     NR_109959  LOC101927843
4    chr9  116829221      117168705     NM_000607          ORM1
5    chr9  116829221      117168705     NM_000608          ORM2
6    chr9  116829221      117168705  NM_001083885          WHRN
7    chr9  116829221      117168705  NM_001317950          AKNA
9    chr9  116829221      117168705     NM_001633          AMBP
11   chr9  116829221      117168705     NM_032888       COL27A1
12   chr9  116829221      117168705     NM_138424         KIF12
13   chr9  116829221      117168705     NR_030255        MIR455,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  242677084      242788728     NM_152666          PLD5
1   chr13   63131624       63428129     NR_047029     LINC00448
4   chr16   71116101       71219953  NM_001198542         HYDIN
7   chr18   40222762       40370161     NM_002930          RIT2
8   chr18   40222762       40370161     NR_046174     LINC00907
9    chr3   41322778       41433794  NM_001322500          ULK4
11   chr5   19018212       19533423  NM_001291956         CDH18
14   chr7     147573         287958     NM_020223        FAM20C
15   chr7     147573         287958     NR_108065  LOC100507642
16   chr7     147573         287958     NR_134324  LOC105375115
17   chr7     147573         287958     NR_134325  LOC102723672
18   chr9   28520697       28664581  NM_001258282        LINGO2,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  102386745      102533746     NR_110211     OLFM3
1  chr5   93456334       93717760  NM_001145678  KIAA0825
2  chr6   38084995       38227719  NM_001172418     BTBD9
3  chr6   38084995       38227719     NM_021943    ZFAND3
5  chr7   71467569       71802545  NM_001017440     CALN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37425790       38861280  NM_001190489      MTRNR2L7
1   chr10   37425790       38861280  NM_001267597        ZNF248
4   chr10   37425790       38861280  NM_001324177        ZNF33A
5   chr10   37425790       38861280  NM_001324246        ZNF37A
9   chr10   37425790       38861280     NM_052997      ANKRD30A
10  chr10   37425790       38861280     NM_145011         ZNF25
11  chr10   37425790       38861280     NR_003086     HSD17B7P2
12  chr10   37425790       38861280     NR_024497     LINC00999
13  chr10   37425790       38861280     NR_024524  LOC100129055
14  chr10   37425790       38861280     NR_027269       SEPT7P9
15  chr10   37425790       38861280     NR_051997      ZNF33BP1
16  chr10   37425790       38861280     NR_104061     LINC00993
19  chr14   37628573       38078843  NM_001171170      SLC25A21
20  chr14   37628573       38078843  NM_001195296        MIPOL1
21  chr14   37628573       38078843  NM_001310135          TTC6
22  chr14   37628573       38078843     NM_004496         FOXA1
23  chr14   37628573       38078843     NR_033240  SLC25A21-AS1
24  chr15   28549551       28677094     NM_004667         HERC2
25  chr15   28549551       28677094     NR_033351       GOLGA8F
26  chr15   28549551       28677094     NR_033353       GOLGA8G
27  chr15   28549551       28677094     NR_039734     MIR4509-3
28   chr2   76594089       77184128  NM_001330370        LRRTM4
29   chr4  169215042      169409281  NM_001012967        DDX60L
31   chr4  169215042      169409281     NM_017631         DDX60
32   chr7    8568770        9864048     NM_152745         NXPH1
33   chr7    8568770        9864048     NR_002790          PER4,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr11   23425522       23537982  NR_107021   MIR8054
1  chr16   76813043       76952421  NR_039870   MIR4719
2  chr20   14622798       14768319  NM_080676   MACROD2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2  181827521      182088766  NM_001278554        UBE2E3
3  chr2  181827521      182088766     NR_130784  LOC101927156,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr10   81436459       81575837  NM_001278495      NUTM2B
1  chr10   81436459       81575837     NR_027512     BEND3P3
2  chr10   81436459       81575837     NR_120611  NUTM2B-AS1
5  chr14   80067120       80225074  NM_001272020       NRXN3
8   chr7  110724553      111121773  NM_001099658       LRRN3
9   chr7  110724553      111121773  NM_001244606      IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81443792       81602294  NM_001278495        NUTM2B
1   chr10   81443792       81602294     NR_027512       BEND3P3
2   chr10   81443792       81602294     NR_029407     LOC642361
3   chr10   81443792       81602294     NR_120611    NUTM2B-AS1
6   chr14   41827171       42132926  NM_001346175         LRFN5
7   chr21   40167122       40314343  NM_001256295          ETS2
9   chr21   40167122       40314343     NR_109926  LOC101928398
10  chr21   40167122       40314343     NR_120405     LOC400867,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30255296       30636102  NM_001282472       GOLGA8J
1   chr15   30255296       30636102  NM_001301025          TJP1
2   chr15   30255296       30636102     NR_026771  DKFZP434L187
3   chr15   30255296       30636102     NR_026859        ULK4P3
4   chr15   30255296       30636102     NR_033933       GOLGA8T
5   chr15   30256085       31548738  NM_001039841     ARHGAP11B
6   chr15   30256085       31548738  NM_001146094          FAN1
8   chr15   30256085       31548738  NM_001243538     LOC283710
9   chr15   30256085       31548738  NM_001252020         TRPM1
12  chr15   30256085       31548738  NM_001282472       GOLGA8J
13  chr15   30256085       31548738  NM_001282484       GOLGA8R
14  chr15   30256085       31548738  NM_001282490       GOLGA8H
15  chr15   30256085       31548738  NM_001301025          TJP1
17  chr15   30256085       31548738     NM_017762        MTMR10
18  chr15   30256085       31548738     NM_139320      CHRFAM7A
19  chr15   30256085       31548738     NR_026771  DKFZP434L187
20  chr15   30256085       31548738     NR_026858        ULK4P1
21  chr15   30256085       31548738     NR_026859        ULK4P3
22  chr15   30256085       31548738     NR_029624        MIR211
23  chr15   30256085       31548738     NR_033933       GOLGA8T
24  chr15   30256085       31548738     NR_038253  LOC100288637
26  chr15   30256085       31548738     NR_072991      HERC2P10
27  chr15   30256085       31548738     NR_135834  LOC102725022
28  chr16   68543773       68647247  NM_001305204         ZFP90
30   chr5   17744731       17845192     NR_134286     LOC646241
32   chr9   41888084       42020378     NR_003670        FGF7P3
33   chr9   41888084       42020378     NR_015363         GLIDR
36   chr9   41888084       42020378     NR_126048  LOC102724238
37   chr9   41888084       42020378     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81486705       81628284     NR_029407   LOC642361
1   chr10   81486705       81628284     NR_120611  NUTM2B-AS1
4   chr14   27004132       27195747     NM_002515       NOVA1
6   chr16   68596095       68699788  NM_001305204       ZFP90
8   chr16   68596095       68699788  NM_001317195        CDH3
9   chr17    3344830        3485783     NM_000049        ASPA
11  chr17    3344830        3485783  NM_001170696     SPATA22
16  chr17    3344830        3485783     NM_018727       TRPV1
21  chr17    3344830        3485783     NM_145068       TRPV3
22   chr2  181866870      181982268  NM_001278554      UBE2E3
25  chr21   30810526       30937468     NM_000830       GRIK1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67240512       67401804     NM_000852     GSTP1
1   chr11   67240512       67401804  NM_001166102    NDUFV1
2   chr11   67240512       67401804  NM_001243750     NUDT8
3   chr11   67240512       67401804  NM_001302959       AIP
4   chr11   67240512       67401804  NM_001318496     CABP2
6   chr11   67240512       67401804     NM_004910   PITPNM1
7   chr11   67240512       67401804     NM_005851   CDK2AP2
8   chr11   67240512       67401804     NM_005995     TBX10
10  chr11   67240512       67401804     NR_033791    DOC2GP
12  chr11   67240512       67401804     NR_106810   MIR6752
13  chr11   67240512       67401804     NR_130935  C11orf72, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12847559       12996339  NM_001009611       PRAMEF4
1    chr1   12847559       12996339  NM_001012276       PRAMEF8
2    chr1   12847559       12996339  NM_001013631      HNRNPCL1
3    chr1   12847559       12996339  NM_001146181      HNRNPCL3
4    chr1   12847559       12996339  NM_001146344      PRAMEF11
5    chr1   12847559       12996339  NM_001294139       PRAMEF1
6    chr1   12847559       12996339  NM_001302551      HNRNPCL4
8    chr1   12847559       12996339     NM_023014       PRAMEF2
9   chr10    6715918        7212955  NM_001018039        SFMBT2
11  chr10    6715918        7212955     NR_038291     LINC00707
12  chr10    6715918        7212955     NR_108074     LINC00706
13  chr10    6715918        7212955     NR_138480         LINP1
14  chr11   81049458       81828506     NR_036186       MIR4300
15  chr11   81049458       81828506     NR_120571     MIR4300HG
16  chr13  113036204      113278754  NM_001286278       TUBGCP3
19  chr13  113036204      113278754     NM_145248        SPACA7
20  chr15   65462176       66779975  NM_001143688         DIS3L
21  chr15   65462176       66779975  NM_001144823       DENND4A
22  chr15   65462176       66779975  NM_001206836        RAB11A
23  chr15   65462176       66779975  NM_001254740       SLC24A1
24  chr15   65462176       66779975  NM_001289986         TIPIN
29  chr15   65462176       66779975     NM_002755        MAP2K1
30  chr15   65462176       66779975     NM_003613          CILP
32  chr15   65462176       66779975     NM_004884        IGDCC3
33  chr15   65462176       66779975     NM_006660          CLPX
34  chr15   65462176       66779975     NM_016395         HACD3
35  chr15   65462176       66779975     NM_017851        PARP16
36  chr15   65462176       66779975     NM_020962        IGDCC4
37  chr15   65462176       66779975     NM_032445        MEGF11
38  chr15   65462176       66779975     NR_004388      SCARNA14
39  chr15   65462176       66779975     NR_036196       MIR4311
40  chr15   65462176       66779975     NR_039736       MIR4511
41  chr15   65462176       66779975     NR_045104          VWA9
43  chr15   65462176       66779975     NR_135485          DPP8
45  chr18   61792315       61951225     NR_027245     LINC00305
46  chr18   61792315       61951225     NR_033881     LOC284294
47  chr18   61792315       61951225     NR_033983     LINC01538
48   chr2     905030        1137113     NM_018968         SNTG2
49   chr2     905030        1137113     NR_136151  LOC101060391
50   chr2   62233703       62356929  NM_001321781        COMMD1
52   chr4   94048967       94163976     NM_001510         GRID2
53   chr8   22965996       23119246  NM_001317899         CHMP7
54   chr8   22965996       23119246     NM_003840     TNFRSF10D
55   chr8   22965996       23119246     NM_003841     TNFRSF10C
56   chr8   22965996       23119246     NM_003844     TNFRSF10A
58   chr8   22965996       23119246     NR_033928     LOC389641,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr18   61800599       61920310     NR_027245  LINC00305
1  chr18   61800599       61920310     NR_033881  LOC284294
2  chr18   61800599       61920310     NR_033983  LINC01538
3   chr2  110219256      110336567  NM_001099289     SH3RF3
4   chr2  110219256      110336567  NM_001321504     SEPT10,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81502955       81663325     NR_029407   LOC642361
1   chr10   81502955       81663325     NR_120611  NUTM2B-AS1
4    chr2  242410485      242521935  NM_001271978       STK25
7    chr2  242410485      242521935     NM_014808       FARP2
8    chr2  242410485      242521935     NM_032515         BOK
9    chr2  242410485      242521935     NR_033346     BOK-AS1
10   chr2  242410485      242521935     NR_036083     MIR3133
11  chr22   19027101       19158918  NM_001184781       DGCR2
12  chr22   19027101       19158918     NM_005315        GSC2
13  chr22   19027101       19158918     NM_022719      DGCR14
14  chr22   19027101       19158918     NM_053006       TSSK2
15  chr22   19027101       19158918     NR_024157      DGCR11
16   chr6   38021149       38150718  NM_001172418       BTBD9
17   chr6   38021149       38150718     NM_021943      ZFAND3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3  155552922      155721259  NM_001190992   SLC33A1
1  chr3  155552922      155721259     NM_003875      GMPS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4167138        4461123  NM_001005161        OR52B4
1   chr11    4167138        4461123     NM_003141        TRIM21
2   chr11    4167138        4461123     NR_047550  LOC100506082
3   chr15  100087912      100546866  NM_001130928         MEF2A
4   chr15  100087912      100546866  NM_001284417        LYSMD4
7   chr15  100087912      100546866     NM_139057      ADAMTS17
8   chr15  100087912      100546866     NR_003260       DNM1P46
9   chr15  100087912      100546866     NR_135737     LOC400464
10   chr8  135661299      135797063  NM_001174158          ZFAT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   88511118       88865695     NM_000101          CYBA
1   chr16   88511118       88865695  NM_001012762          CTU2
2   chr16   88511118       88865695  NM_001142864        PIEZO1
3   chr16   88511118       88865695  NM_001171815        RNF166
5   chr16   88511118       88865695  NM_001294340        ZC3H18
6   chr16   88511118       88865695     NM_002461           MVD
7   chr16   88511118       88865695     NM_013278         IL17C
8   chr16   88511118       88865695     NM_153813         ZFPM1
9   chr16   88511118       88865695     NM_178310         SNAI3
11  chr16   88511118       88865695     NR_024399     SNAI3-AS1
13  chr16   88511118       88865695     NR_039873       MIR4722
14  chr16   88511118       88865695     NR_049821       MIR5189
15  chr16   88511118       88865695     NR_103774  LOC100289580
16  chr16   88511118       88865695     NR_120387     LOC339059,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr13   80809805       80982974  NM_001318536     SPRY2
3   chr5   19053531       20234438  NM_001291956     CDH18,    chrom  cnv_start  cnv_terminate       tx_name          gene_name
0  chr22   17120855       17250514     NR_001591             TPTEP1
1  chr22   17120855       17250514     NR_040115  ANKRD62P1-PARP4P3
2  chr22   17120855       17250514     NR_134584       LOC101929350
3   chr3   76831397       78389083  NM_001128929              ROBO2
5   chr9   28582620       29015482  NM_001258282             LINGO2
7   chr9   28582620       29015482     NR_030597             MIR876
8   chr9   28582620       29015482     NR_030618             MIR873,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   97385816       97644970     NM_000110       DPYD
1    chr1   97385816       97644970     NR_046590   DPYD-AS1
2   chr10   54217985       54359026     NR_120641  LINC01468
3    chr2   97231370       97392419  NM_001115016     KANSL3
4    chr2   97231370       97392419  NM_001293083     FER1L5
5    chr2   97231370       97392419  NM_001322354     LMAN2L
8    chr2  242488909      242778943  NM_001164356      THAP4
9    chr2  242488909      242778943  NM_001165031      DTYMK
10   chr2  242488909      242778943  NM_001167601       NEU4
12   chr2  242488909      242778943  NM_001287249     D2HGDH
13   chr2  242488909      242778943  NM_001330161       ING5
16   chr2  242488909      242778943     NM_022134    GAL3ST2
18   chr2  242488909      242778943     NM_032515        BOK
19   chr2  242488909      242778943     NM_178326      ATG4B
20   chr2  242488909      242778943     NR_033346    BOK-AS1
21   chr7   14835810       14962264     NM_004080       DGKB
23   chr9     191588         458657  NM_001190458      DOCK8
24   chr9     191588         458657     NM_152569    C9orf66,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  108030156      108382271  NM_001079874      VAV3
2  chr14   80059133       80183075  NM_001272020     NRXN3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   99158388       99292124  NM_001243270         CNTN5
2   chr13   80784650       80925150  NM_001318536         SPRY2
5   chr14   47823467       48021474  NM_001113498         MDGA2
6   chr15   20958718       22345180  NM_001277303        POTEB2
7   chr15   20958718       22345180  NM_001277304         POTEB
8   chr15   20958718       22345180     NM_207355        POTEB3
10  chr15   20958718       22345180     NR_015416     LOC727924
11  chr15   20958718       22345180     NR_024387       CXADRP2
12  chr15   20958718       22345180     NR_027053     LOC646214
13  chr15   20958718       22345180     NR_027992        NBEAP1
14  chr15   20958718       22345180     NR_028506         NF1P2
16  chr15   20958718       22345180     NR_036062     MIR3118-2
17  chr15   20958718       22345180     NR_036063     MIR3118-3
18  chr15   20958718       22345180     NR_040094     LINC01193
19  chr15   20958718       22345180     NR_049895     MIR5701-2
20  chr15   20958718       22345180     NR_110480  LOC101927079
24  chr15   20958718       22345180     NR_128721     MIR5701-3
25   chr3     649724        1336837  NM_001289081         CNTN6
26   chr3     649724        1336837     NR_110118     LINC01266
27   chr3    2350767        2530177  NM_001206955         CNTN4
29   chr5   12387241       12575852     NR_033383     LINC01194, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr15   43986747       44147859  NM_001018108           SERF2
1   chr15   43986747       44147859  NM_001167941           WDR76
5   chr15   43986747       44147859  NM_001199885            HYPK
6   chr15   43986747       44147859  NM_001258031         SERINC4
7   chr15   43986747       44147859  NM_001321927          CKMT1A
10  chr15   43986747       44147859     NM_005313           PDIA3
11  chr15   43986747       44147859     NM_005926           MFAP1
12  chr15   43986747       44147859     NM_025165            ELL3
13  chr15   43986747       44147859     NR_002318      CATSPER2P1
14  chr15   43986747       44147859     NR_031695         MIR1282
15  chr15   43986747       44147859     NR_037673  SERF2-C15ORF63
17  chr18   36466684       37020580     NR_024391        MIR924HG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102422897      102851322     NR_110211         OLFM3
1    chr1  143521850      144261081  NM_001123068       PPIAL4G
2    chr1  143521850      144261081  NM_001278267        NBPF20
3    chr1  143521850      144261081  NM_001287385        FAM72C
4    chr1  143521850      144261081  NM_001345942        FAM72D
8    chr1  143521850      144261081     NR_104014     LINC01138
9    chr1  143521850      144261081     NR_106967       MIR6077
10   chr1  143521850      144261081     NR_111930  LOC100132057
12  chr15   20662222       20788787  NM_001145004      GOLGA6L6
13  chr15   20662222       20788787     NR_027411      GOLGA8CP
14  chr15   20662222       20788787     NR_036432       HERC2P3
15   chr2   53513827       53983396  NM_001164165    GPR75-ASB3
16   chr2   53513827       53983396  NM_001201965          ASB3
18   chr5  175408421      175510274  NM_001265615       FAM153B
19   chr5  175408421      175510274     NR_103794  LOC100996385,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr4   69250830       69386139     NM_014058  TMPRSS11E
1  chr8  135665448      135771138  NM_001174158       ZFAT
3  chr9  116772559      116977634  NM_001318041     ZNF618
4  chr9  116772559      116977634     NM_001633       AMBP
5  chr9  116772559      116977634     NM_032888    COL27A1
6  chr9  116772559      116977634     NM_138424      KIF12
7  chr9  116772559      116977634     NR_030255     MIR455,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   14879814       15106628     NM_015209       KAZN
2   chr11   67337186       68589018     NM_000695    ALDH3B2
3   chr11   67337186       68589018     NM_000852      GSTP1
5   chr11   67337186       68589018  NM_001031847      CPT1A
6   chr11   67337186       68589018  NM_001039656     TESMIN
7   chr11   67337186       68589018  NM_001161473    ALDH3B1
8   chr11   67337186       68589018  NM_001164164     PPP6R3
9   chr11   67337186       68589018  NM_001166102     NDUFV1
10  chr11   67337186       68589018  NM_001243750      NUDT8
12  chr11   67337186       68589018  NM_001300907      KMT5B
16  chr11   67337186       68589018     NM_002335       LRP5
17  chr11   67337186       68589018     NM_002496     NDUFS8
19  chr11   67337186       68589018     NM_005995      TBX10
20  chr11   67337186       68589018     NM_006019     TCIRG1
22  chr11   67337186       68589018     NM_015973        GAL
24  chr11   67337186       68589018     NM_022338   C11orf24
25  chr11   67337186       68589018     NM_030930    UNC93B1
26  chr11   67337186       68589018     NM_080658       ACY3
28  chr11   67337186       68589018     NM_212469       CHKA
29  chr11   67337186       68589018     NR_024249   FAM86C2P
30  chr11   67337186       68589018     NR_033791     DOC2GP
31  chr11   67337186       68589018     NR_039840    MIR4691
32  chr11   67337186       68589018     NR_106811    MIR6753
33  chr11   67337186       68589018     NR_106963    MIR7113
34  chr11   67337186       68589018     NR_130935   C11orf72
35   chr3  162888838      164265235     NR_031665    MIR1263
36   chr3  162888838      164265235     NR_033945  LINC01192,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr9    9910192       10066581  NM_002839     PTPRD,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67961982       68201523  NM_001127384    CTNNA3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67315436       67514221     NM_000695       ALDH3B2
1   chr11   67315436       67514221     NM_000852         GSTP1
3   chr11   67315436       67514221  NM_001166102        NDUFV1
4   chr11   67315436       67514221  NM_001243750         NUDT8
5   chr11   67315436       67514221     NM_005995         TBX10
6   chr11   67315436       67514221     NM_080658          ACY3
8   chr11   67315436       67514221     NR_033791        DOC2GP
9   chr11   67315436       67514221     NR_130935      C11orf72
10  chr21   13513268       16197724  NM_001256370        SAMSN1
11  chr21   13513268       16197724  NM_001256579     LOC388813
13  chr21   13513268       16197724  NM_001302998          LIPI
14  chr21   13513268       16197724  NM_001320602         RBM11
15  chr21   13513268       16197724     NM_006948        HSPA13
16  chr21   13513268       16197724     NM_174981         POTED
18  chr21   13513268       16197724     NR_003087        ABCC13
20  chr21   13513268       16197724     NR_026755      CYP4F29P
21  chr21   13513268       16197724     NR_026916    ANKRD30BP2
22  chr21   13513268       16197724     NR_027270   ANKRD20A11P
23  chr21   13513268       16197724     NR_036061     MIR3118-1
24  chr21   13513268       16197724     NR_036164     MIR3156-3
25  chr21   13513268       16197724     NR_046512    SAMSN1-AS1
26  chr21   13513268       16197724     NR_110544  LOC102724188
27  chr21   13513268       16197724     NR_128718     MIR8069-2
28   chr5  125619833      125744925  NM_001146319        GRAMD3
29   chr5  125619833      125744925     NR_105039  LOC101927488
30   chr9   67216560       67322310     NR_002817        AQP7P1
31   chr9   67216560       67322310     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  145056153      145222258  NM_001277444      NBPF9
1    chr1  145056153      145222258  NM_001278267     NBPF20
2    chr1  145056153      145222258     NM_004892     SEC22B
3    chr1  145056153      145222258     NM_022359    PDE4DIP
4    chr1  145056153      145222258     NM_203458   NOTCH2NL
5   chr12   57726178       57858472  NM_001160045       GLI1
7   chr12   57726178       57858472  NM_001330122     R3HDM2
8   chr12   57726178       57858472     NM_005538      INHBC
10  chr12   57726178       57858472     NM_031479      INHBE
11  chr15   20650323       20823427  NM_001145004   GOLGA6L6
12  chr15   20650323       20823427     NR_027411   GOLGA8CP
13  chr15   20650323       20823427     NR_036432    HERC2P3
14  chr16   68570054       69171999  NM_001039690      CHTF8
16  chr16   68570054       69171999  NM_001199280       HAS3
17  chr16   68570054       69171999  NM_001305204      ZFP90
19  chr16   68570054       69171999  NM_001317184       CDH1
20  chr16   68570054       69171999  NM_001317195       CDH3
22  chr16   68570054       69171999     NM_024562     TANGO6
23  chr16   68570054       69171999     NM_032830       UTP4
25  chr16   68570054       69171999     NR_106988  MIR7641-2
26   chr6   20934430       21046550     NM_017774     CDKAL1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr10   81496609       81813276     NM_003019          SFTPD
1   chr10   81496609       81813276     NR_002724          MBL1P
2   chr10   81496609       81813276     NR_027431    TMEM254-AS1
3   chr10   81496609       81813276     NR_029407      LOC642361
4   chr10   81496609       81813276     NR_033857        BMS1P21
5   chr10   81496609       81813276     NR_120611     NUTM2B-AS1
8   chr11   81825699       81948626     NR_120571      MIR4300HG
9   chr16   15126469       15248213  NM_001270767          NTAN1
10  chr16   15126469       15248213  NM_001285445         PDXDC1
14  chr16   15126469       15248213  NM_001301064           RRN3
16  chr16   15126469       15248213     NR_106775      MIR6511B1
17  chr16   15126469       15248213     NR_106965      MIR6511B2
18  chr16   15126469       15248213     NR_123721  PKD1P6-NPIPP1
20  chr16   15126469       15248213     NR_125434   LOC100505915
21  chr19   47834272       47950246  NM_001009813          MEIS3
22  chr19   47834272       47950246  NM_001271749          C5AR2
26  chr19   47834272       47950246     NM_014681          DHX34
27  chr19   47834272       47950246     NM_015063         SLC8A2
29  chr21   36041729       36235394  NM_001001890          RUNX1
31  chr21   36041729       36235394  NM_001317009          CLIC6
33  chr21   36041729       36235394     NR_024351      LINC00160
34  chr21   36041729       36235394     NR_038885      LINC01426
36   chr7  117574653      117893084     NM_016200           LSM8
37   chr7  117574653      117893084     NM_019644         ANKRD7
38   chr8    6958398        7216707  NM_001164457        ZNF705G
39   chr8    6958398        7216707  NM_001256873        USP17L1
40   chr8    6958398        7216707  NM_001256874        USP17L4
41   chr8    6958398        7216707     NR_003668     DEFB109P1B
42   chr8    6958398        7216707     NR_027000      LINC00965
45   chr8    6958398        7216707     NR_027423         FAM66B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   55780555       55881124  NM_001001921        OR5AS1
1   chr11   55780555       55881124  NM_001003750         OR8I2
2   chr11   55780555       55881124  NM_001005200         OR8H2
3   chr12   72708009       72875988     NM_013381         TRHDE
4    chr3  193083014      193195315     NM_032279       ATP13A4
5    chr3  193083014      193195315     NM_198505       ATP13A5
6    chr7   64049455       64345270  NM_001160183        ZNF138
7    chr7   64049455       64345270  NM_001282360        ZNF107
9    chr7   64049455       64345270     NR_077227  LOC100128885
11   chr7   64049455       64345270     NR_106898       MIR6839
12   chr9   39017614       39133614     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   30219427       30332617  NM_001301025      TJP1
1   chr16   15075179       15184246  NM_001270767     NTAN1
2   chr16   15075179       15184246  NM_001285445    PDXDC1
7   chr16   15075179       15184246  NM_001301064      RRN3
9   chr17   78165729       78292330     NM_000199      SGSH
10  chr17   78165729       78292330  NM_001166349  SLC26A11
11  chr17   78165729       78292330  NM_001256071    RNF213
12  chr17   78165729       78292330  NM_001257970    CARD14
17   chr7  110772078      111292639  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1   76042914       76302059     NM_000016          ACADM
1    chr1   76042914       76302059  NM_001130058        SLC44A5
4    chr1   76042914       76302059     NM_002440           MSH4
5    chr1   76042914       76302059     NM_004582        RABGGTB
7    chr1   76042914       76302059     NR_002748       SNORD45B
8    chr1   76042914       76302059     NR_002749       SNORD45A
9    chr1   76042914       76302059     NR_003042       SNORD45C
10   chr1   76042914       76302059     NR_130749         DLSTP1
11  chr16   15062778       15297169  NM_001270767          NTAN1
12  chr16   15062778       15297169  NM_001285445         PDXDC1
17  chr16   15062778       15297169  NM_001301064           RRN3
19  chr16   15062778       15297169     NR_037466      MIR3180-4
20  chr16   15062778       15297169     NR_106775      MIR6511B1
21  chr16   15062778       15297169     NR_106965      MIR6511B2
22  chr16   15062778       15297169     NR_123721  PKD1P6-NPIPP1
24  chr16   15062778       15297169     NR_125434   LOC100505915
25  chr19   21678511       22115008  NM_001001415         ZNF429
26  chr19   21678511       22115008  NM_001256650          ZNF43
28  chr19   21678511       22115008     NM_173531         ZNF100
29  chr19   21678511       22115008     NR_024523      LOC641367
30  chr19   21678511       22115008     NR_037194      LINC00664
31   chr4  118876067      119308298     NM_003619         PRSS12
32   chr4  118876067      119308298     NM_004784          NDST3
33   chr4  118876067      119308298     NR_002963        SNORA24
34   chr4  118876067      119308298     NR_003584          SNHG8
35   chr4  169244410      169364120  NM_001012967         DDX60L
37   chr8   48494329       48596349  NM_001080394          SPIDR,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr2  234360267      234646964  NM_001072    UGT1A6
1  chr2  234360267      234646964  NM_003648      DGKD
2  chr2  234360267      234646964  NM_007120    UGT1A4
3  chr2  234360267      234646964  NM_018218     USP40
4  chr2  234360267      234646964  NM_019075   UGT1A10
5  chr2  234360267      234646964  NM_019076    UGT1A8
6  chr2  234360267      234646964  NM_019077    UGT1A7
7  chr2  234360267      234646964  NM_019078    UGT1A5
8  chr2  234360267      234646964  NM_019093    UGT1A3
9  chr2  234360267      234646964  NM_021027    UGT1A9,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr19   57535303       57670542  NM_001012729      DUXA
1  chr19   57535303       57670542     NM_020903     USP29
2  chr19   57535303       57670542     NM_052882      ZIM3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr12   27090363       27288370  NM_001080406     C12orf71
1   chr12   27090363       27288370  NM_001171887     FGFR1OP2
3   chr12   27090363       27288370  NM_001271811        MED21
4   chr12   27090363       27288370     NM_016551       TM7SF3
5   chr12   27090363       27288370     NM_018164         ASUN
6   chr13   90854230       91052993     NR_030754       MIR622
7   chr15   28565703       29005284  NM_001282468      GOLGA8M
8   chr15   28565703       29005284     NM_004667        HERC2
9   chr15   28565703       29005284     NR_026589      WHAMMP2
10  chr15   28565703       29005284     NR_033351      GOLGA8F
12  chr15   28565703       29005284     NR_033353      GOLGA8G
14  chr15   28565703       29005284     NR_036443      HERC2P9
15  chr15   28565703       29005284     NR_039734    MIR4509-3
17  chr16   76748769       77159194     NR_039870      MIR4719
18  chr17   63471876       63595218     NM_004655        AXIN2
19  chr19   23454943       23575337  NM_001300951        ZNF91
20  chr19   23454943       23575337     NR_103741       IPO5P1
21   chr3    4078538        6606207  NM_001164675        SUMF1
22   chr3    4078538        6606207  NM_001168272        ITPR1
23   chr3    4078538        6606207  NM_001243723       SETMAR
25   chr3    4078538        6606207     NM_003670      BHLHE40
26   chr3    4078538        6606207     NM_014674        EDEM1
27   chr3    4078538        6606207     NM_018184        ARL8B
28   chr3    4078538        6606207     NR_004428         EGOT
29   chr3    4078538        6606207     NR_037903  BHLHE40-AS1
30   chr3    4078538        6606207     NR_039953      MIR4790
31   chr3    4078538        6606207     NR_108075    ITPR1-AS1
33   chr3   37780153       37962972     NM_002207        ITGA9
34   chr3   37780153       37962972     NM_005808       CTDSPL
35   chr3   37780153       37962972     NR_110531    ITGA9-AS1
37   chr6  161975035      162129131     NM_013988        PARK2
38   chr9   41444424       41659546  NM_001113541    SPATA31A5
39   chr9   41444424       41659546     NM_015667    SPATA31A7
40   chr9   41444424       41659546     NR_003528      ZNF658B
41   chr9   41444424       41659546     NR_026803      FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   80991249       81117620  NM_001145026     PTPRQ
1  chr12   80991249       81117620     NM_002469      MYF6
2  chr12   80991249       81117620     NM_005593      MYF5
3  chr18   55828010       55928471  NM_001144964    NEDD4L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   67650292       67985834  NM_001127384     CTNNA3
2   chr9   39066784       39440487  NM_001085452  SPATA31A1
3   chr9   39066784       39440487     NM_033655    CNTNAP3
4   chr9   39066784       39440487     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0   chr1   97413896       97912366  NM_000110       DPYD
1   chr1   97413896       97912366  NR_046590   DPYD-AS1
2  chr10   54180285       54538039  NM_000242       MBL2
3  chr10   54180285       54538039  NR_120641  LINC01468
5   chr5   22781758       22941250  NM_004061      CDH12,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   12818694       12945705  NM_001009611    PRAMEF4
1   chr1   12818694       12945705  NM_001013631   HNRNPCL1
2   chr1   12818694       12945705  NM_001080830   PRAMEF12
3   chr1   12818694       12945705  NM_001146181   HNRNPCL3
4   chr1   12818694       12945705  NM_001146344   PRAMEF11
5   chr1   12818694       12945705  NM_001294139    PRAMEF1
6   chr1   12818694       12945705  NM_001302551   HNRNPCL4
8   chr1   12818694       12945705     NM_023014    PRAMEF2
9   chr1   12818694       12945705     NM_152290   C1orf158
10  chr5   96594795       98012916     NR_105028  LINC01340
11  chr5   99839065      100006516     NM_198507    FAM174A
12  chr6   91087499       91243848     NM_145332     MAP3K7
13  chr7  110720858      110973772  NM_001099658      LRRN3
14  chr7  110720858      110973772  NM_001244606     IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr3   17379074       18158100  NM_001134381        TBC1D5
1  chr3   17379074       18158100  NM_001257177     LOC339862
3  chr3   17379074       18158100     NR_135536  LOC105376975
4  chr3   65802060       65903186  NM_001033057         MAGI1
6  chr3   65802060       65903186     NR_046575     MAGI1-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   47767934       48368137  NM_001113498      MDGA2
2  chr14   47767934       48368137     NR_037503    MIR548Y
3  chr14   47767934       48368137     NR_039996  LINC00648
5   chr6  140450639      140653444     NR_037441    MIR3668
6   chr9   15035951       15294991  NM_001168339     TTC39B,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   82919295       83316515     NR_033423        DHFRP3
1  chr2  195547922      195694866     NR_110223  LOC101927431
2  chr4   91209409       91321536  NM_001145065        CCSER1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   55725573       55873953  NM_001142770    PCDH15,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   47801480       48149791  NM_001113498         MDGA2
3  chr15   30270043       30652711  NM_001282472       GOLGA8J
4  chr15   30270043       30652711     NR_026771  DKFZP434L187
5  chr15   30270043       30652711     NR_026859        ULK4P3
6  chr15   30270043       30652711     NR_033933       GOLGA8T
7  chr21   23409987       23595927     NR_038400     LINC00308
8  chr21   23409987       23595927     NR_109959  LOC101927843
9   chr7   75719709       75829436     NR_135079       GTF2IP7,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr8    4206051        4319774  NM_033225     CSMD1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  237489136      237978842     NM_001035          RYR2
1   chr1  237489136      237978842     NR_039626       MIR4428
2   chr2   50765415       50943125  NM_001330082         NRXN1
3   chr2   50765415       50943125     NR_130470       MIR8485
4   chr3  145764159      145931314     NM_000935         PLOD2
5   chr3  145764159      145931314  NM_001128304        PLSCR4
7   chr9   41911219       42075305     NR_003670        FGF7P3
8   chr9   41911219       42075305     NR_015363         GLIDR
11  chr9   41911219       42075305     NR_126048  LOC102724238
12  chr9   41911219       42075305     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  241717637      242105817  NM_001319224      EXO1
1    chr1  241717637      242105817     NM_001821      CHML
2    chr1  241717637      242105817     NM_003679       KMO
4    chr1  241717637      242105817     NM_014322      OPN3
5    chr1  241717637      242105817     NM_144625     WDR64
6   chr10  120572334      120811797     NM_003750     EIF3A
7   chr10  120572334      120811797     NM_199461    NANOS1
8   chr16   31856066       32000773  NM_001265588    ZNF267
9   chr18   24657278       24767306  NM_001256316     CHST9
10   chr2   56562775       56667189  NM_001080433   CCDC85A
11   chr3     343646         447156  NM_001253387      CHL1
13   chr3     343646         447156     NR_110739  CHL1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  243537660      243647392     NM_006642       SDCCAG8
1   chr13   46171706       46468211  NM_001286341         SPERT
3   chr13   46171706       46468211     NM_182542       ERICH6B
4   chr13   46171706       46468211     NM_198849         SIAH3
5   chr13   46171706       46468211     NR_125786     LINC01055
6    chr2  202201472      202477351  NM_001168216      ALS2CR11
8    chr2  202201472      202477351  NM_001206864        STRADB
9    chr2  202201472      202477351     NM_015049         TRAK2
10   chr2  202201472      202477351     NR_110620      ALS2CR12
11   chr7  132722296      132837507  NM_001317178        CHCHD3
13   chr7  132722296      132837507     NR_133931  LOC105375512
14   chr9   67074380       67285277     NR_002817        AQP7P1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr20   14790295       14967268     NM_080676      MACROD2
1   chr20   14790295       14967268     NR_037841  MACROD2-AS1
3    chr4  169243163      169454052  NM_001012967       DDX60L
4    chr4  169243163      169454052  NM_001166108        PALLD
6    chr5   99815701      100021853     NM_198507      FAM174A
7    chr6   89461075       89766797  NM_001286428        RNGTT
8    chr6   92052951       92309124     NR_039786      MIR4643
9    chr6  131079636      131227035  NM_001135554      EPB41L2
10   chr6  131079636      131227035  NM_001195597        SMLR1, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr2  193630245      194166237     NR_002769     PCGEM1
1  chr5     114242         226304  NM_001080478    LRRC14B
2  chr5     114242         226304     NM_004168       SDHA
3  chr5     114242         226304     NM_052909   PLEKHG4B
4  chr5     114242         226304     NM_145265    CCDC127
5  chr9   31286525       31411165     NR_135134  LINC01243,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   47795845       48060429  NM_001113498     MDGA2
3  chr15   26944763       27059974  NM_001191320    GABRB3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48266725       48412150  NM_001004702         OR4C3
1   chr11   48266725       48412150  NM_001004725         OR4S1
2   chr11   48266725       48412150  NM_001004726         OR4X1
3   chr11   48266725       48412150  NM_001004727         OR4X2
4   chr11   48266725       48412150  NM_001005513        OR4C45
5   chr11   48427546       48945765  NM_001005512        OR4A47
6   chr16   16280826       16412618  NM_001004067         NOMO3
7   chr16   16280826       16412618  NM_001079528         ABCC6
9   chr16   16280826       16412618     NR_036140     MIR3179-1
10  chr16   16280826       16412618     NR_036141     MIR3180-1
11  chr16   16280826       16412618     NR_036142     MIR3180-2
12  chr16   16280826       16412618     NR_036447        PKD1P1
13  chr16   16280826       16412618     NR_128713     MIR3670-4
14  chr18   35079376       35873564     NM_020180         CELF4
15  chr18   35079376       35873564     NR_036202       MIR4318
16   chr2   52169657       52574449     NR_135237     LOC730100
17   chr7      92217         855807  NM_001164758       PRKAR1B
21   chr7      92217         855807  NM_001171946          SUN1
22   chr7      92217         855807  NM_001195127  WI2-2373I1.2
24   chr7      92217         855807     NM_020223        FAM20C
25   chr7      92217         855807     NM_033023         PDGFA
26   chr7      92217         855807     NR_033960     LOC442497
27   chr7      92217         855807     NR_033963        HRAT92
28   chr7      92217         855807     NR_075098        DNAAF5
29   chr7      92217         855807     NR_108065  LOC100507642
30   chr7      92217         855807     NR_110054  LOC101926963
32   chr7      92217         855807     NR_132384  LOC101927000
33   chr7      92217         855807     NR_134324  LOC105375115
34   chr7      92217         855807     NR_134325  LOC102723672
35   chr7  109594037      109892647     NR_003024       EIF3IP1
36   chr8     170130         379034  NM_001042415        ZNF596
41   chr8     170130         379034     NM_012173        FBXO25
42   chr8     170130         379034     NR_003572     RPL23AP53
43   chr8     170130         379034     NR_103537        FAM87A,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   13051429       13162702  NM_001013407    PRAMEF5
1   chr1   13051429       13162702  NM_001306072   PRAMEF26
2   chr1   13051429       13162702  NM_001310134   PRAMEF25
3   chr1   13051429       13162702     NR_111945  PRAMEF36P
4   chr4   94195084       94458040     NM_001510      GRID2
5   chr6   97422227       97677294  NM_001286251     KLHL32
9   chr6   97422227       97677294     NM_198468     MMS22L
10  chr6   97422227       97677294     NR_031679   MIR548H3,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr16   79748338       80072888  NR_104660  LINC01229
2  chr16   79748338       80072888  NR_104663     MAFTRR
3   chr9   39047534       39168346  NM_033655    CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   34161047       34396107     NR_126403     LINC01317
1   chr2   34161047       34396107     NR_132381     LINC01318
2   chr4    8585831        8745173  NM_001014447           CPZ
3   chr4    8585831        8745173     NM_080819         GPR78
5   chr7  143029407      143273794     NM_000083         CLCN1
6   chr7  143029407      143273794  NM_001008747       CTAGE15
7   chr7  143029407      143273794  NM_001278297       FAM131B
8   chr7  143029407      143273794  NM_001322263  LOC100507507
9   chr7  143029407      143273794     NM_003461           ZYX
10  chr7  143029407      143273794     NM_005232         EPHA1
12  chr7  143029407      143273794     NM_176883       TAS2R41
13  chr7  143029407      143273794     NM_177437       TAS2R60
14  chr7  143029407      143273794     NR_033897     EPHA1-AS1
15  chr7  143029407      143273794     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   37912382       38363747     NR_135110  LOC105376633
1   chr11   48375913       48545189  NM_001005512        OR4A47
2   chr11   60262316       60504169  NM_001278320        MS4A13
3   chr11   60262316       60504169  NM_001310141        MS4A18
4   chr11   60262316       60504169     NM_017716        MS4A12
5   chr11   60262316       60504169     NM_031457         MS4A8
6   chr11   60262316       60504169     NR_026946     LINC00301
7   chr16   68553288       68768614  NM_001305204         ZFP90
9   chr16   68553288       68768614  NM_001317195          CDH3
10   chr3   60457746       60607630  NM_001320899          FHIT
11   chr3   60457746       60607630     NR_128708      MIR548BB
12   chr4    8980968        9616397  NM_001040448       DEFB131
13   chr4    8980968        9616397  NM_001242326      USP17L25
21   chr4    8980968        9616397  NM_001256852      USP17L10
22   chr4    8980968        9616397  NM_001256853      USP17L12
24   chr4    8980968        9616397  NM_001256854      USP17L11
27   chr4    8980968        9616397  NM_001256855      USP17L13
28   chr4    8980968        9616397  NM_001256857      USP17L17
29   chr4    8980968        9616397  NM_001256860      USP17L19
30   chr4    8980968        9616397  NM_001256861      USP17L20
31   chr4    8980968        9616397  NM_001256894      USP17L15
32   chr4    8980968        9616397     NR_027279      USP17L6P
33   chr4    8980968        9616397     NR_031688      MIR548I2
34   chr4    8980968        9616397     NR_046416      USP17L9P
35   chr5  124878309      124995250     NR_109887  LOC101927460,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68580595       68682615  NM_001127384        CTNNA3
2   chr10   68580595       68682615     NR_111911  LOC101928961
3   chr16   79733628       79911137     NR_104660     LINC01229
5   chr16   79733628       79911137     NR_104663        MAFTRR
6    chr2  167157566      167302126     NM_002976         SCN7A
7    chr2  167157566      167302126     NM_002977         SCN9A
8    chr2  167157566      167302126     NR_110260  LOC101929680
9    chr7   64102272       64271729  NM_001160183        ZNF138
10   chr7   64102272       64271729  NM_001282360        ZNF107
13   chr7   64102272       64271729     NR_106898       MIR6839,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr7  110502489      111537440  NM_001099658      LRRN3
1  chr7  110502489      111537440  NM_001244606     IMMP2L
2  chr7  110502489      111537440     NM_014705      DOCK4
4  chr7  110502489      111537440     NR_103806  DOCK4-AS1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   95989951       96119742  NM_001034914        KCNIP3
2  chr2   95989951       96119742     NM_016044        FAHD2A
3  chr4  169238564      169378211  NM_001012967        DDX60L
5  chr4  169238564      169378211     NM_017631         DDX60
6  chr5  120559983      120906157     NR_104999  LOC102467226
7  chr7  124959401      125325425     NR_110188  LOC101928283,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   98190489       98896203     NM_183376     ARRDC4
1  chr15   98190489       98896203     NR_024172  LINC00923
2  chr15   98190489       98896203     NR_120325  LINC01582
3   chr6  162818872      162928500     NM_013988      PARK2
4   chr9    9832494        9948657     NM_002839      PTPRD
5   chr9   28616773       28774727  NM_001258282     LINGO2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   59059624       59197345  NM_001085487      MYSM1
1   chr12   85513328       85784324  NM_001079910     LRRIQ1
2   chr12   85513328       85784324     NM_006982       ALX1
3    chr2  242444632      242799209  NM_001164356      THAP4
4    chr2  242444632      242799209  NM_001165031      DTYMK
5    chr2  242444632      242799209  NM_001167601       NEU4
7    chr2  242444632      242799209  NM_001271978      STK25
10   chr2  242444632      242799209  NM_001287249     D2HGDH
11   chr2  242444632      242799209  NM_001330161       ING5
13   chr2  242444632      242799209     NM_005018      PDCD1
15   chr2  242444632      242799209     NM_022134    GAL3ST2
17   chr2  242444632      242799209     NM_032515        BOK
18   chr2  242444632      242799209     NM_178326      ATG4B
19   chr2  242444632      242799209     NR_033346    BOK-AS1
20   chr3  116131360      117616545  NM_001318915      LSAMP
21   chr3  116131360      117616545     NR_015391      TUSC7
22   chr3  116131360      117616545     NR_039649    MIR4447
23   chr3  116131360      117616545     NR_121607  LINC00901,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143658460      143798845  NM_001123068       PPIAL4G
1   chr1  143658460      143798845     NR_104014     LINC01138
2   chr1  143658460      143798845     NR_106967       MIR6077
3   chr1  143658460      143798845     NR_111930  LOC100132057
4   chr7   64037443       64483130  NM_001007253        ERV3-1
5   chr7   64037443       64483130  NM_001160183        ZNF138
6   chr7   64037443       64483130  NM_001282360        ZNF107
7   chr7   64037443       64483130     NM_015852        ZNF117
8   chr7   64037443       64483130     NM_021148        ZNF273
9   chr7   64037443       64483130     NR_033245     LOC641746
11  chr7   64037443       64483130     NR_077227  LOC100128885
13  chr7   64037443       64483130     NR_106898       MIR6839
14  chr8   86627583       86817687     NR_003594      REXO1L2P
21  chr9   24402519       24561429  NM_001271706        IZUMO3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63342769       63473528     NR_047029  LINC00448
3    chr2   35687698       35850419     NR_039629   MIR548AD
4    chr6  129255636      129373652  NM_001079823      LAMA2
5    chr7   75803999       75970375  NM_001110199      SRRM3
6    chr7   75803999       75970375     NM_001540      HSPB1
7    chr7   75803999       75970375     NM_012479      YWHAG
8    chr7  110653943      111629309  NM_001099658      LRRN3
9    chr7  110653943      111629309  NM_001244606     IMMP2L
10   chr7  110653943      111629309     NM_014705      DOCK4
12   chr7  110653943      111629309     NR_103806  DOCK4-AS1
13   chr8    3658939        3819470     NM_033225      CSMD1
14   chr9   28591156       28723708  NM_001258282     LINGO2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   54696096       54844697     NR_108062  LINC00458
2   chr2   62200305       62446968  NM_001319075     B3GNT2
3   chr2   62200305       62446968  NM_001321781     COMMD1
6   chr2   62200305       62446968     NR_049824    MIR5192,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr16   15427570       15546129  NM_001128423       MPV17L
1  chr16   15427570       15546129  NM_001277325       NPIPA5
2  chr16   15427570       15546129     NM_033201     C16orf45
3   chr3  193086746      193370368     NM_015560         OPA1
4   chr3  193086746      193370368     NM_032279      ATP13A4
5   chr3  193086746      193370368     NM_198505      ATP13A5
6   chr3  193086746      193370368     NR_046634     OPA1-AS1
7   chr3  193086746      193370368     NR_046726  ATP13A4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr21   35998344       37341453  NM_001001890         RUNX1
2   chr21   35998344       37341453  NM_001317009         CLIC6
4   chr21   35998344       37341453     NR_024351     LINC00160
5   chr21   35998344       37341453     NR_026812     RUNX1-IT1
6   chr21   35998344       37341453     NR_030414        MIR802
7   chr21   35998344       37341453     NR_038885     LINC01426
9   chr21   35998344       37341453     NR_073512  LOC100506403
10  chr21   35998344       37341453     NR_110418  LOC101928269,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67879453       68080193  NM_001127384        CTNNA3
2   chr13   63341342       63451311     NR_047029     LINC00448
5   chr15   20624058       20961148  NM_001145004      GOLGA6L6
6   chr15   20624058       20961148     NR_027411      GOLGA8CP
7   chr15   20624058       20961148     NR_027992        NBEAP1
8   chr15   20624058       20961148     NR_036432       HERC2P3
9   chr21   30823506       30981701     NM_000830         GRIK1
13  chr21   30823506       30981701     NR_033368     GRIK1-AS2
14   chr8  110238768      110356249  NM_001128211        NUDCD1
15   chr8  110238768      110356249  NM_001193557          ENY2
17   chr9  102230308      102390020     NR_109802  LOC101928438,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr15   28532400       28720476  NM_004667      HERC2
1  chr15   28532400       28720476  NR_033351    GOLGA8F
2  chr15   28532400       28720476  NR_033353    GOLGA8G
3  chr15   28532400       28720476  NR_039734  MIR4509-3
4  chr20   14690068       14854154  NM_080676    MACROD2
5   chr9   41531194       41631216  NR_003528    ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87390033       87524759  NM_001134492        HS2ST1
2   chr13   63114954       63251356     NR_047029     LINC00448
3   chr15   28637936       28803667     NR_033351       GOLGA8F
4   chr15   28637936       28803667     NR_033353       GOLGA8G
5   chr15   28637936       28803667     NR_039734     MIR4509-3
7   chr22   20057096       21405409     NM_000185      SERPIND1
8   chr22   20057096       21405409  NM_001018060         AIFM3
10  chr22   20057096       21405409  NM_001159554         P2RX6
11  chr22   20057096       21405409  NM_001190326         DGCR8
12  chr22   20057096       21405409  NM_001242313      TMEM191B
13  chr22   20057096       21405409  NM_001243537       CCDC188
14  chr22   20057096       21405409  NM_001256523         ZNF74
15  chr22   20057096       21405409  NM_001278639        RANBP1
18  chr22   20057096       21405409  NM_001291006       LRRC74B
19  chr22   20057096       21405409  NM_001293236         MED15
21  chr22   20057096       21405409     NM_004173        SLC7A4
22  chr22   20057096       21405409     NM_004782        SNAP29
23  chr22   20057096       21405409     NM_005207          CRKL
25  chr22   20057096       21405409     NM_006767         LZTR1
26  chr22   20057096       21405409     NM_013373        ZDHHC8
27  chr22   20057096       21405409     NM_015672        RIMBP3
28  chr22   20057096       21405409     NM_022727        TRMT2A
29  chr22   20057096       21405409     NM_023004         RTN4R
30  chr22   20057096       21405409     NM_030573         THAP7
31  chr22   20057096       21405409     NM_033257        DGCR6L
32  chr22   20057096       21405409     NM_058004         PI4KA
33  chr22   20057096       21405409     NM_153334        SCARF2
34  chr22   20057096       21405409     NR_002829        P2RX6P
35  chr22   20057096       21405409     NR_003563       PI4KAP1
36  chr22   20057096       21405409     NR_003608       TUBA3FP
37  chr22   20057096       21405409     NR_024592     POM121L4P
38  chr22   20057096       21405409     NR_026815      TMEM191A
39  chr22   20057096       21405409     NR_026919     LINC00896
40  chr22   20057096       21405409     NR_027051     THAP7-AS1
42  chr22   20057096       21405409     NR_030379        MIR649
43  chr22   20057096       21405409     NR_031618       MIR1286
44  chr22   20057096       21405409     NR_031706       MIR1306
45  chr22   20057096       21405409     NR_033825        KLHL22
46  chr22   20057096       21405409     NR_037412       MIR3618
47  chr22   20057096       21405409     NR_038460     LOC284865
48  chr22   20057096       21405409     NR_106874       MIR6816
49  chr22   20057096       21405409     NR_110537  LOC101928891
50  chr22   20057096       21405409     NR_136560       FAM230A
51  chr22   20057096       21405409     NR_136569     LOC729461
52  chr22   20057096       21405409     NR_136572  LOC101927859
53   chr5   12451838       12908047     NR_033383     LINC01194
54   chr5   12451838       12908047     NR_039659       MIR4454,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   87231891       87478337     NM_152336         AGBL1
1  chr15   87231891       87478337     NR_135682  LOC105370954
2   chr3  145828575      146037242     NM_000935         PLOD2
3   chr3  145828575      146037242  NM_001128304        PLSCR4
5   chr4    8565624        8698176  NM_001014447           CPZ
6   chr4    8565624        8698176     NM_080819         GPR78,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  112382801      112584218  NM_001270945  LOC643355
1    chr1  112382801      112584218     NM_172198      KCND3
2    chr1  112382801      112584218     NR_046619  KCND3-AS1
3    chr1  112382801      112584218     NR_046783  KCND3-IT1
4   chr11    6718809        6848379  NM_001004489     OR2AG1
5   chr11    6718809        6848379  NM_001004490     OR2AG2
6   chr11    6718809        6848379     NM_003696      OR6A2
7   chr11    6718809        6848379     NR_003945     GVINP1
8   chr11  104599239      105133800  NM_001007232     CARD17
9   chr11  104599239      105133800     NM_001225      CASP4
10  chr11  104599239      105133800  NM_001257119      CASP1
11  chr11  104599239      105133800     NM_021571     CARD18
13  chr11  104599239      105133800     NM_052889     CARD16
14  chr11  104599239      105133800     NR_024239      CASP5
15  chr11  104599239      105133800     NR_034064     CASP12
16  chr11  104599239      105133800     NR_034078  LOC643733
17  chr11  104599239      105133800     NR_131905    CASP1P2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   37959151       38213626  NM_001195296      MIPOL1
1   chr14   37959151       38213626  NM_001310135        TTC6
2   chr14   37959151       38213626     NM_004496       FOXA1
3   chr15   30299349       30444553  NM_001282472     GOLGA8J
4   chr15   30299349       30444553     NR_026859      ULK4P3
5   chr15   30299349       30444553     NR_033933     GOLGA8T
6   chr21   17879737       17985430     NR_027790    MIR99AHG
8   chr21   17879737       17985430     NR_029480    MIRLET7C
9   chr21   17879737       17985430     NR_029514      MIR99A
10  chr21   17879737       17985430     NR_029694    MIR125B2
19   chr5  151310533      151635083     NR_109876  CTB-12O2.1
20   chr6   79322068       79615173  NM_001010844    IRAK1BP1
21   chr7   14878029       15044166     NM_004080        DGKB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143618944      143850573  NM_001123068       PPIAL4G
1    chr1  143618944      143850573     NR_104014     LINC01138
2    chr1  143618944      143850573     NR_106967       MIR6077
3    chr1  143618944      143850573     NR_111930  LOC100132057
4   chr21   13537972       15130602     NM_174981         POTED
5   chr21   13537972       15130602     NR_026916    ANKRD30BP2
6   chr21   13537972       15130602     NR_036061     MIR3118-1
7   chr21   13537972       15130602     NR_036164     MIR3156-3
8   chr21   13537972       15130602     NR_110544  LOC102724188
9   chr21   13537972       15130602     NR_128718     MIR8069-2
10   chr3  160034061      160259809  NM_001190241         IFT80
12   chr3  160034061      160259809  NM_001288753          SMC4
13   chr3  160034061      160259809     NM_002268         KPNA4
15   chr3  160034061      160259809     NM_173084        TRIM59
16   chr3  160034061      160259809     NR_003001       SCARNA7
17   chr3  160034061      160259809     NR_029525       MIR16-2
18   chr3  160034061      160259809     NR_029663        MIR15B
19   chr7   75859494       76198231  NM_001102594          DTX2
21   chr7   75859494       76198231  NM_001110199         SRRM3
22   chr7   75859494       76198231  NM_001110354           ZP3
23   chr7   75859494       76198231     NM_001540         HSPB1
25   chr7   75859494       76198231     NM_012479         YWHAG
26   chr7   75859494       76198231     NM_030570         UPK3B
27   chr7   75859494       76198231     NM_080744         SSC4D
28   chr7   75859494       76198231     NR_003262        FDPSP2
29   chr7   75859494       76198231     NR_029411  LOC100133091,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30304927       30892765  NM_001282472       GOLGA8J
1   chr15   30304927       30892765  NM_001282484       GOLGA8R
2   chr15   30304927       30892765     NM_139320      CHRFAM7A
3   chr15   30304927       30892765     NR_026771  DKFZP434L187
4   chr15   30304927       30892765     NR_026858        ULK4P1
5   chr15   30304927       30892765     NR_026859        ULK4P3
6   chr15   30304927       30892765     NR_033933       GOLGA8T
7    chr3  162883613      163107505     NR_033945     LINC01192
8    chr7   75845043       75969803  NM_001110199         SRRM3
9    chr7   75845043       75969803     NM_001540         HSPB1
10   chr7   75845043       75969803     NM_012479         YWHAG,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   85420711       85531580  NM_001079910     LRRIQ1
1   chr12   85420711       85531580  NM_001100917    TSPAN19
2   chr13   23157642       24409474     NM_000231       SGCG
3   chr13   23157642       24409474  NM_001204458   TNFRSF19
4   chr13   23157642       24409474  NM_001278055       SACS
5   chr13   23157642       24409474     NM_005932      MIPEP
9   chr13   23157642       24409474     NR_033774    BASP1P1
10  chr13   23157642       24409474     NR_038995  LINC00327
11  chr13   23157642       24409474     NR_103450   SACS-AS1
12  chr13   23157642       24409474     NR_138043  LINC00621
13  chr22   20075277       20227340  NM_001190326      DGCR8
14  chr22   20075277       20227340  NM_001243537    CCDC188
15  chr22   20075277       20227340  NM_001278639     RANBP1
18  chr22   20075277       20227340     NM_013373     ZDHHC8
19  chr22   20075277       20227340     NM_022727     TRMT2A
20  chr22   20075277       20227340     NR_026919  LINC00896
21  chr22   20075277       20227340     NR_038460  LOC284865
22  chr22   20075277       20227340     NR_106874    MIR6816
23   chr3   60363481       60508359  NM_001320899       FHIT
24   chr4  145142872      146460671  NM_001003688      SMAD1
25   chr4  145142872      146460671  NM_001102653      OTUD4
26   chr4  145142872      146460671  NM_001256706    ANAPC10
29   chr4  145142872      146460671     NM_002940      ABCE1
32   chr4  145142872      146460671     NM_022475       HHIP
33   chr4  145142872      146460671     NR_037595   HHIP-AS1
34   chr4  145142872      146460671     NR_108077  SMAD1-AS2
35   chr4  145142872      146460671     NR_126371  SMAD1-AS1
36   chr6  116514347      116626648  NM_001322940        DSE
37   chr6  116514347      116626648     NM_003309     TSPYL1
38   chr6  116514347      116626648     NM_021648     TSPYL4
39   chr6  116514347      116626648     NM_152729     NT5DC1
43   chr7   64111890       64244256  NM_001282360     ZNF107
45   chr7   64111890       64244256     NR_106898    MIR6839
46   chr7  108465876      108669824  NM_001024607    C7orf66,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67927655       68143730  NM_001127384     CTNNA3
2    chr2   52228606       52360053     NR_135237  LOC730100
3   chr22   20103684       20308759  NM_001243537    CCDC188
4   chr22   20103684       20308759  NM_001278639     RANBP1
7   chr22   20103684       20308759     NM_013373     ZDHHC8
8   chr22   20103684       20308759     NM_022727     TRMT2A
9   chr22   20103684       20308759     NM_023004      RTN4R
10  chr22   20103684       20308759     NM_033257     DGCR6L
11  chr22   20103684       20308759     NR_026919  LINC00896
12  chr22   20103684       20308759     NR_031618    MIR1286
13  chr22   20103684       20308759     NR_038460  LOC284865,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   81428952       81850104  NM_001270367      TMEM254
3   chr10   81428952       81850104  NM_001278495       NUTM2B
4   chr10   81428952       81850104     NM_003019        SFTPD
5   chr10   81428952       81850104     NR_002724        MBL1P
6   chr10   81428952       81850104     NR_027431  TMEM254-AS1
7   chr10   81428952       81850104     NR_027512      BEND3P3
8   chr10   81428952       81850104     NR_029407    LOC642361
9   chr10   81428952       81850104     NR_033857      BMS1P21
10  chr10   81428952       81850104     NR_120611   NUTM2B-AS1
13  chr12   27221743       27467035  NM_001080406     C12orf71
14  chr12   27221743       27467035     NM_015000       STK38L
15  chr14   45530048       45663546  NM_001308120      FAM179B
16  chr14   45530048       45663546  NM_001308133        FANCM
18  chr14   45530048       45663546     NM_002013        FKBP3
19  chr14   45530048       45663546     NM_017922       PRPF39
20  chr14   45530048       45663546     NR_003691     SNORD127
21   chr2  242493357      242624327  NM_001164356        THAP4
22   chr2  242493357      242624327  NM_001165031        DTYMK
24   chr2  242493357      242624327     NM_032515          BOK
25   chr2  242493357      242624327     NM_178326        ATG4B
26   chr2  242493357      242624327     NR_033346      BOK-AS1,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr7    3412052        3542373  NM_152744          SDK1
1  chr9   44261653       44406948  NR_121564  LOC101927827
2  chr9   44261653       44406948  NR_126050  LOC103908605,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   68558815       68913392  NM_001305204      ZFP90
2  chr16   68558815       68913392  NM_001317184       CDH1
3  chr16   68558815       68913392  NM_001317195       CDH3
4  chr16   68558815       68913392     NM_024562     TANGO6
5  chr16   68558815       68913392     NR_106988  MIR7641-2
6  chr17   14142048       14254931     NM_006041   HS3ST3B1
7  chr17   14142048       14254931     NR_026880   MGC12916,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   26574978       26809945  NM_001029881          CIB4
1   chr2   26574978       26809945  NM_001105519       C2orf70
2   chr2   26574978       26809945     NM_004802          OTOF
3   chr2   26574978       26809945     NM_033505       SELENOI
4   chr2   26574978       26809945     NM_145038          DRC1
6   chr7    2708837        3205528  NM_001282440         GNA12
8   chr7    2708837        3205528  NM_001284355          AMZ1
11  chr7    2708837        3205528  NM_001324281        CARD11
13  chr7    2708837        3205528     NR_126024  LOC100129603,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr4   66495232       66629206  NM_001281766      EPHA5
3  chr4   66495232       66629206     NR_034138  EPHA5-AS1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  144675441      144869106  NM_001198832   PDE4DIP
2  chr1  144675441      144869106  NM_001277444     NBPF9
3  chr1  144675441      144869106  NM_001278267    NBPF20
4  chr1  144675441      144869106     NR_102405     NBPF8
5  chr7  110686913      110800244  NM_001099658     LRRN3
6  chr7  110686913      110800244  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  165162660      165317347  NM_001174069      LMX1A
2   chr10   19142554       19338114  NM_001142308     MALRD1
3   chr11   79084881       79257764  NM_001098816      TENM4
4   chr11   79084881       79257764     NR_030598     MIR708
5   chr11   79084881       79257764     NR_049841    MIR5579
6    chr4   69275213       69973923     NM_001075    UGT2B10
8    chr4   69275213       69973923     NM_001076    UGT2B15
9    chr4   69275213       69973923     NM_001077    UGT2B17
10   chr4   69275213       69973923  NM_001330719     UGT2B7
11   chr4   69275213       69973923     NM_014058  TMPRSS11E
12   chr4   69275213       69973923     NM_024743     UGT2A3
13   chr4  169244824      169648855  NM_001012967     DDX60L
14   chr4  169244824      169648855  NM_001166108      PALLD
17   chr5   23837805       23974890     NR_131245    C5orf17,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   21143837       21625581     NR_040094     LINC01193
1  chr15   21143837       21625581     NR_049895     MIR5701-2
2   chr5   63810015       63938973  NM_001029875        RGS7BP
4   chr9   41916620       42099166     NR_003670        FGF7P3
5   chr9   41916620       42099166     NR_015363         GLIDR
8   chr9   41916620       42099166     NR_126048  LOC102724238
9   chr9   41916620       42099166     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   25096144       26347976  NM_001009909         LUZP2
1   chr11   25096144       26347976  NM_001313726          ANO3
2   chr11   25096144       26347976     NR_132968  LOC105376599
3   chr15   21125946       22284387  NM_001277304         POTEB
4   chr15   21125946       22284387     NM_207355        POTEB3
5   chr15   21125946       22284387     NR_015416     LOC727924
6   chr15   21125946       22284387     NR_024387       CXADRP2
7   chr15   21125946       22284387     NR_027053     LOC646214
8   chr15   21125946       22284387     NR_028506         NF1P2
10  chr15   21125946       22284387     NR_036063     MIR3118-3
11  chr15   21125946       22284387     NR_040094     LINC01193
12  chr15   21125946       22284387     NR_049895     MIR5701-2
13  chr15   21125946       22284387     NR_110480  LOC101927079
15  chr15   21125946       22284387     NR_128721     MIR5701-3
16   chr2   51974037       52105895     NR_135237     LOC730100
17   chr3  118733465      118925952  NM_001015887        IGSF11
18   chr3  118733465      118925952     NM_006952         UPK1B
20   chr3  118733465      118925952     NM_152539       C3orf30
21   chr4   69238474       69694683     NM_001075       UGT2B10
22   chr4   69238474       69694683     NM_001076       UGT2B15
23   chr4   69238474       69694683     NM_001077       UGT2B17
24   chr4   69238474       69694683     NM_014058     TMPRSS11E, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81495206       81622196     NR_029407   LOC642361
1   chr10   81495206       81622196     NR_120611  NUTM2B-AS1
4   chr16   21799681       22054650  NM_001164579    C16orf52
5   chr16   21799681       22054650  NM_001310148      NPIPB4
6   chr16   21799681       22054650     NM_003366      UQCRC2
7   chr16   21799681       22054650     NM_173806       PDZD9
8   chr16   21799681       22054650     NR_003370      RRN3P1
9    chr2   97325674       97560734  NM_001122646     FAM178B
11   chr2   97325674       97560734  NM_001293083      FER1L5
12   chr2   97325674       97560734  NM_001322354      LMAN2L
13   chr2   97325674       97560734     NM_016466     ANKRD39
15   chr2   97325674       97560734     NM_017623       CNNM3
16   chr2   97325674       97560734     NM_017789      SEMA4C
17   chr2   97325674       97560734     NM_020184       CNNM4
19   chr2   97325674       97560734     NM_144994     ANKRD23
20   chr2   97325674       97560734     NR_036074     MIR3127
21   chr3   36140872       36776301     NM_003149        STAC
22   chr3   36140872       36776301     NM_033403       DCLK3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12843570       12945439  NM_001009611       PRAMEF4
1    chr1   12843570       12945439  NM_001013631      HNRNPCL1
2    chr1   12843570       12945439  NM_001146181      HNRNPCL3
3    chr1   12843570       12945439  NM_001146344      PRAMEF11
4    chr1   12843570       12945439  NM_001294139       PRAMEF1
5    chr1   12843570       12945439  NM_001302551      HNRNPCL4
7    chr1   12843570       12945439     NM_023014       PRAMEF2
8   chr16   21782121       21924014  NM_001310148        NPIPB4
9   chr16   21782121       21924014     NR_003370        RRN3P1
10   chr2     930019        1519097     NM_018968         SNTG2
11   chr2     930019        1519097     NM_175719           TPO
13   chr2     930019        1519097     NR_136151  LOC101060391,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr14   27001651       27175540  NM_002515     NOVA1
2   chr4   93260627       93361408  NM_001510     GRID2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr6  129193242      129383787  NM_001079823         LAMA2
1   chr7    6726790        8283031  NM_001037763       COL28A1
2   chr7    6726790        8283031  NM_001099697      RSPH10B2
3   chr7    6726790        8283031  NM_001136020          ICA1
5   chr7    6726790        8283031  NM_001302350         UMAD1
6   chr7    6726790        8283031     NM_002947          RPA3
7   chr7    6726790        8283031     NM_006956         ZNF12
8   chr7    6726790        8283031     NM_019005          MIOS
9   chr7    6726790        8283031     NM_020156       C1GALT1
11  chr7    6726790        8283031     NM_138426        GLCCI1
12  chr7    6726790        8283031     NM_198097         CCZ1B
13  chr7    6726790        8283031     NR_002217        PMS2CL
14  chr7    6726790        8283031     NR_034022  LOC100131257
15  chr7    6726790        8283031     NR_037454       MIR3683
16  chr7    6726790        8283031     NR_108073  LOC101927354
17  chr7    6726790        8283031     NR_110018  LOC100505921
18  chr7    6726790        8283031     NR_110084  LOC101927391,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67939658       68049930  NM_001127384        CTNNA3
2   chr17   63473363       63993924  NM_001037325        CEP112
5   chr17   63473363       63993924     NM_004655         AXIN2
6    chr2   77972491       78229936     NR_024342        SNAR-H
7    chr2   77972491       78229936     NR_110286  LOC101927926
8    chr2   77972491       78229936     NR_110288  LOC101927967
9    chr7   64114003       64241207  NM_001282360        ZNF107
11   chr7   64114003       64241207     NR_106898       MIR6839
12   chr7   75379411       75710679     NM_000941           POR
13   chr7   75379411       75710679  NM_001040457        RHBDD2
14   chr7   75379411       75710679  NM_001317788        STYXL1
16   chr7   75379411       75710679     NM_002991         CCL24
17   chr7   75379411       75710679     NM_005918          MDH2
18   chr7   75379411       75710679     NM_006072         CCL26
19   chr7   75379411       75710679     NM_031925      TMEM120A
20   chr7   75379411       75710679     NR_002955      SNORA14A
21   chr7   75379411       75710679     NR_039795       MIR4651
23   chr9   41738418       43149614  NM_001012419     ANKRD20A3
25   chr9   41738418       43149614  NM_001012421     ANKRD20A2
27   chr9   41738418       43149614     NM_199244       FOXD4L4
28   chr9   41738418       43149614     NR_003670        FGF7P3
29   chr9   41738418       43149614     NR_015363         GLIDR
30   chr9   41738418       43149614     NR_026558        AQP7P3
31   chr9   41738418       43149614     NR_027472     LOC642929
32   chr9   41738418       43149614     NR_046175     LOC286297
33   chr9   41738418       43149614     NR_121570  LOC101928381
34   chr9   41738418       43149614     NR_121572      GXYLT1P3
38   chr9   41738418       43149614     NR_126048  LOC102724238
39   chr9   41738418       43149614     NR_126049     LOC554249
40   chr9   41738418       43149614     NR_135597  LOC101928195
41   chr9   41738418       43149614     NR_136299  LOC101929583
42   chr9   41738418       43149614     NR_136310  LOC105379252,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr4  136831165      137014318     NR_103763     LINC00613
1  chr6  162858011      162981515     NM_013988         PARK2
2  chr7  133222512      133348477     NM_021807         EXOC4
3  chr8   19786790       20126226     NM_000237           LPL
4  chr8   19786790       20126226  NM_001135691       SLC18A1
5  chr8   19786790       20126226     NM_001693      ATP6V1B2
6  chr8   19786790       20126226     NM_021020         LZTS1
7  chr9    9472032        9969888     NM_002839         PTPRD
8  chr9    9472032        9969888     NR_135135  LOC105375972,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  185943814      186058823     NM_031935       HMCN1
1   chr10   68002213       68333547  NM_001127384      CTNNA3
3   chr13   95819316       96414783  NM_001160100      CLDN10
4   chr13   95819316       96414783  NM_001301829       ABCC4
6   chr13   95819316       96414783     NM_006260      DNAJC3
8   chr13   95819316       96414783     NM_014934       DZIP1
9   chr13   95819316       96414783     NR_046533  CLDN10-AS1
10  chr13   95819316       96414783     NR_132117  DNAJC3-AS1
11  chr14   45457105       45719208  NM_001308120     FAM179B
12  chr14   45457105       45719208  NM_001308133       FANCM
14  chr14   45457105       45719208     NM_002013       FKBP3
15  chr14   45457105       45719208     NM_017922      PRPF39
16  chr14   45457105       45719208     NM_018353    MIS18BP1
17  chr14   45457105       45719208     NR_003691    SNORD127
18   chr4   71379481       71508916  NM_001286731        AMTN
19   chr4   71379481       71508916     NM_016519        AMBN
20   chr4   71379481       71508916     NM_031889        ENAM,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr17    3388776        3531135     NM_000049       ASPA
2   chr17    3388776        3531135  NM_001321336    SPATA22
3   chr17    3388776        3531135     NM_013276       SHPK
4   chr17    3388776        3531135     NM_018727      TRPV1
8   chr17    3388776        3531135     NM_145068      TRPV3
9    chr4   69288655       69401986     NM_014058  TMPRSS11E
10   chr9   14973586       15113233     NR_003920  LOC389705,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67287395       67496319     NM_000695   ALDH3B2
1   chr11   67287395       67496319     NM_000852     GSTP1
3   chr11   67287395       67496319  NM_001166102    NDUFV1
4   chr11   67287395       67496319  NM_001243750     NUDT8
5   chr11   67287395       67496319  NM_001318496     CABP2
6   chr11   67287395       67496319     NM_005995     TBX10
7   chr11   67287395       67496319     NM_080658      ACY3
9   chr11   67287395       67496319     NR_033791    DOC2GP
10  chr11   67287395       67496319     NR_130935  C11orf72
11   chr9    6574154        6690248     NM_000170      GLDC
12   chr9   24425950       25157607  NM_001271706    IZUMO3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15  100157792      100696686  NM_001130928         MEF2A
1   chr15  100157792      100696686  NM_001284417        LYSMD4
4   chr15  100157792      100696686     NM_139057      ADAMTS17
5   chr15  100157792      100696686     NR_003260       DNM1P46
6   chr15  100157792      100696686     NR_135737     LOC400464
7   chr16   14847075       15013212  NM_001277323        NPIPA3
8   chr16   14847075       15013212  NM_001277324        NPIPA2
9   chr16   14847075       15013212     NM_014287         NOMO1
10  chr16   14847075       15013212     NR_023387       ABCC6P2
11  chr16   14847075       15013212     NR_036140     MIR3179-1
12  chr16   14847075       15013212     NR_036141     MIR3180-1
13  chr16   14847075       15013212     NR_036142     MIR3180-2
14  chr16   14847075       15013212     NR_128713     MIR3670-4
15  chr16   76594662       76727074     NR_110934  LOC101928203
16   chr5  104100410      104689488     NR_000039       RAB9BP1
17   chr6  162822472      162931780     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   38163000       38327086  NM_001310135          TTC6
1   chr14   47812512       48047235  NM_001113498         MDGA2
2   chr15   28662066       28801567     NR_033351       GOLGA8F
3   chr15   28662066       28801567     NR_033353       GOLGA8G
4   chr15   28662066       28801567     NR_039734     MIR4509-3
6    chr2   51738985       51971403     NR_135237     LOC730100
7    chr7   80214019       80520135     NM_000072          CD36
15   chr7   80214019       80520135     NM_006379        SEMA3C
16   chr8   58164247       58295431     NR_026772     LINC00588
17   chr8   58164247       58295431     NR_038874     LOC286177
18   chr8   58164247       58295431     NR_125818  LOC101929488,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   20124580       20231120  NM_001243537       CCDC188
1   chr22   20124580       20231120     NM_013373        ZDHHC8
2   chr22   20124580       20231120     NM_023004         RTN4R
3   chr22   20124580       20231120     NR_026919     LINC00896
4   chr22   20124580       20231120     NR_038460     LOC284865
5    chr9   14872341       14997949     NM_144966         FREM1
6    chr9   14872341       14997949     NR_003920     LOC389705
7    chr9   41921192       42080904     NR_003670        FGF7P3
8    chr9   41921192       42080904     NR_015363         GLIDR
11   chr9   41921192       42080904     NR_126048  LOC102724238
12   chr9   41921192       42080904     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  233753910      234182457     NM_002245      KCNK1
1    chr1  233753910      234182457     NM_173508    SLC35F3
2    chr1  233753910      234182457     NR_039625    MIR4427
3   chr16   72556389       72658155     NR_126330  LINC01572
4   chr20   23319176       23449658  NM_001283018       NAPB
5   chr20   23319176       23449658  NM_001317019       GZF1
6   chr20   23319176       23449658     NM_013248       NXT1
8   chr20   23319176       23449658     NM_080830      CST11
9   chr20   23319176       23449658     NM_138283      CSTL1
10  chr20   23319176       23449658     NR_109884  LINC01431
11  chr22   20057764       20188734  NM_001190326      DGCR8
12  chr22   20057764       20188734  NM_001243537    CCDC188
13  chr22   20057764       20188734  NM_001278639     RANBP1
16  chr22   20057764       20188734     NM_013373     ZDHHC8
17  chr22   20057764       20188734     NM_022727     TRMT2A
18  chr22   20057764       20188734     NR_031706    MIR1306
19  chr22   20057764       20188734     NR_037412    MIR3618
20  chr22   20057764       20188734     NR_038460  LOC284865
21  chr22   20057764       20188734     NR_106874    MIR6816
22   chr5   20433997       20581009  NM_001291956      CDH18,   chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr7    4124737        4417824  NM_001079653        SDK1
2  chr8    7850085        7963665     NR_003668  DEFB109P1B
3  chr8    7850085        7963665     NR_027424      FAM66E
4  chr8    7850085        7963665     NR_031689    MIR548I3
5  chr9   39087429       39364823  NM_001085452   SPATA31A1
6  chr9   39087429       39364823     NM_033655     CNTNAP3,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr8    2025863        2186912  NM_003970     MYOM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    7130930        7243678  NM_001018039        SFMBT2
2   chr10    7130930        7243678     NR_132972      SNORD129
3   chr10   55679458       55799168  NM_001142770        PCDH15
6   chr11   67209030       67319302  NM_001018070        CORO1B
7   chr11   67209030       67319302  NM_001078650       TMEM134
8   chr11   67209030       67319302  NM_001300895         CABP4
10  chr11   67209030       67319302  NM_001302959           AIP
11  chr11   67209030       67319302  NM_001318496         CABP2
13  chr11   67209030       67319302     NM_004910       PITPNM1
14  chr11   67209030       67319302     NM_005851       CDK2AP2
17  chr11   67209030       67319302     NM_206997        GPR152
19  chr11   67209030       67319302     NR_106810       MIR6752
20  chr14   45492244       45636128  NM_001308120       FAM179B
21  chr14   45492244       45636128  NM_001308133         FANCM
23  chr14   45492244       45636128     NM_002013         FKBP3
24  chr14   45492244       45636128     NM_017922        PRPF39
25  chr14   45492244       45636128     NR_003691      SNORD127
26  chr15   28576373       28804906     NR_033351       GOLGA8F
28  chr15   28576373       28804906     NR_033353       GOLGA8G
30  chr15   28576373       28804906     NR_039734     MIR4509-3
32  chr18   67108233       67240658     NM_152721          DOK6
33  chr18   67108233       67240658     NR_134579  LOC105372179
34   chr7   75735910       76137044  NM_001102594          DTX2
36   chr7   75735910       76137044  NM_001110199         SRRM3
37   chr7   75735910       76137044  NM_001110354           ZP3
38   chr7   75735910       76137044     NM_001540         HSPB1
40   chr7   75735910       76137044     NM_012479         YWHAG
41   chr7   75735910       76137044     NM_080744         SSC4D
42   chr7   75735910       76137044     NR_003262        FDPSP2
43   chr7   75735910       76137044     NR_135079       GTF2IP7
44   chr7  110691897      111026433  NM_001099658         LRRN3
45   chr7  110691897      111026433  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88999626       89397142  NM_001178118      MINPP1
2   chr10   88999626       89397142     NR_024397  NUTM2A-AS1
3   chr10   88999626       89397142     NR_029408   LINC00863
4   chr10   88999626       89397142     NR_039825     MIR4678
5   chr10   88999626       89397142     NR_046091   LINC00864
6   chr10   88999626       89397142     NR_075100      NUTM2D
8   chr13   46978679       47649305     NM_000621       HTR2A
9   chr13   46978679       47649305  NM_001164213       LRCH1
10  chr13   46978679       47649305     NM_001984         ESD
12  chr13   46978679       47649305     NR_046612   HTR2A-AS1
13  chr13   46978679       47649305     NR_120426   LINC01198
14  chr15   30296708       30419637  NM_001282472     GOLGA8J
15  chr15   30296708       30419637     NR_026859      ULK4P3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr20   14669860       14780819     NM_080676    MACROD2
1   chr22   20108831       20327952  NM_001243537    CCDC188
2   chr22   20108831       20327952  NM_001278639     RANBP1
5   chr22   20108831       20327952     NM_013373     ZDHHC8
6   chr22   20108831       20327952     NM_023004      RTN4R
7   chr22   20108831       20327952     NM_033257     DGCR6L
8   chr22   20108831       20327952     NR_026919  LINC00896
9   chr22   20108831       20327952     NR_031618    MIR1286
10  chr22   20108831       20327952     NR_038460  LOC284865
11   chr8    7020892        7133247     NR_027000  LINC00965,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   21005974       21666102  NM_001277303     POTEB2
1  chr15   21005974       21666102     NM_207355     POTEB3
2  chr15   21005974       21666102     NR_028506      NF1P2
3  chr15   21005974       21666102     NR_036062  MIR3118-2
4  chr15   21005974       21666102     NR_040094  LINC01193
5  chr15   21005974       21666102     NR_049895  MIR5701-2
7   chr4    8596481        8747897  NM_001014447        CPZ
8   chr5  104433441      104693661     NR_000039    RAB9BP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   31413590       31716331  NM_001304274        IMMP1L
1   chr11   31413590       31716331     NM_019040          ELP4
2   chr11   31413590       31716331     NM_181706       DNAJC24
3   chr13   19670060       20213762  NM_001271850         TPTE2
4   chr13   19670060       20213762     NM_006001        TUBA3C
5   chr13   19670060       20213762     NM_017520      MPHOSPH8
7   chr13   19670060       20213762     NR_027248     ANKRD26P3
8   chr13   19670060       20213762     NR_034026     LINC00421
9   chr13   19670060       20213762     NR_046988     LINC00350
12  chr13   19670060       20213762     NR_126054  LOC101928697
13  chr14   37994730       38158695  NM_001195296        MIPOL1
14  chr14   37994730       38158695  NM_001310135          TTC6
15  chr14   37994730       38158695     NM_004496         FOXA1
16  chr17   47824680       48073675  NM_001077503          TAC4
17  chr17   47824680       48073675  NM_001199158          KAT7
18  chr17   47824680       48073675  NM_001242791      FLJ45513
19  chr17   47824680       48073675     NM_001934          DLX4
20  chr17   47824680       48073675     NM_005220          DLX3
21  chr17   47824680       48073675     NM_030802       FAM117A
23   chr9   28164331       28284781  NM_001258282        LINGO2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   28443467       28570693     NM_004667     HERC2
1   chr5   22778689       22884283     NM_004061     CDH12
2   chr5  127823328      128487859  NM_001317984   SLC27A6
3   chr5  127823328      128487859     NM_001999      FBN2
4   chr5  127823328      128487859     NM_016048     ISOC1
5   chr5  127823328      128487859     NR_039776   MIR4633
6   chr8   15298048       15699547     NM_006765     TUSC3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   22464662       22920084     NR_103810     LINC00540
1   chr16   21472801       21620621  NM_001077180        METTL9
3   chr16   21472801       21620621     NR_002594      SLC7A5P2
4   chr16   21472801       21620621     NR_027155        SMG1P3
5   chr16   21472801       21620621     NR_049833     MIR3680-2
6   chr16   21472801       21620621     NR_110930  LOC101927814
7   chr16   71103126       71504625  NM_001099642         CMTR2
8   chr16   71103126       71504625  NM_001198542         HYDIN
10  chr16   71103126       71504625  NM_001304492         ZNF23
15  chr16   71103126       71504625     NM_001740         CALB2
19   chr2  167167156      167463661     NM_002976         SCN7A
20   chr2  167167156      167463661     NM_002977         SCN9A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   54225394       54368125     NR_120641     LINC01468
1   chr14   47756373       48066562  NM_001113498         MDGA2
4    chr2  234322127      234943646     NM_000463        UGT1A1
5    chr2  234322127      234943646  NM_001001394        DNAJB3
6    chr2  234322127      234943646     NM_001072        UGT1A6
7    chr2  234322127      234943646  NM_001282962         HJURP
8    chr2  234322127      234943646  NM_001287395        MROH2A
9    chr2  234322127      234943646     NM_003648          DGKD
10   chr2  234322127      234943646     NM_007120        UGT1A4
11   chr2  234322127      234943646     NM_018218         USP40
12   chr2  234322127      234943646     NM_019075       UGT1A10
13   chr2  234322127      234943646     NM_019076        UGT1A8
14   chr2  234322127      234943646     NM_019077        UGT1A7
15   chr2  234322127      234943646     NM_019078        UGT1A5
16   chr2  234322127      234943646     NM_019093        UGT1A3
17   chr2  234322127      234943646     NM_021027        UGT1A9
18   chr2  234322127      234943646     NM_024080         TRPM8
21   chr2  234322127      234943646     NR_024322        MSL3P1
22   chr2  234322127      234943646     NR_037694  LOC100286922,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  134218998      134812442     NM_054025        B3GAT1
1   chr11  134218998      134812442     NM_138342        GLB1L2
2   chr11  134218998      134812442     NR_033852     LOC283177
3   chr18   40222470       40417380     NM_002930          RIT2
4   chr18   40222470       40417380     NR_046174     LINC00907
5    chr5      95550         206980  NM_001080478       LRRC14B
6    chr5      95550         206980     NM_052909      PLEKHG4B
7    chr5      95550         206980     NM_145265       CCDC127
8    chr5   15995312       16979699  NM_001034850       FAM134B
9    chr5   15995312       16979699  NM_001102562       MARCH11
10   chr5   15995312       16979699     NM_012334         MYO10
12   chr5   15995312       16979699     NM_033414        ZNF622
13   chr5   15995312       16979699     NR_104625  LOC101929505
14   chr5   15995312       16979699     NR_109946  LOC101929524
15   chr7  110692224      110829868  NM_001099658         LRRN3
16   chr7  110692224      110829868  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244994929      245301077  NM_001143943        EFCAB2
2    chr1  244994929      245301077  NM_001312871         COX20
4    chr1  244994929      245301077     NM_004501        HNRNPU
7    chr1  244994929      245301077     NR_111907  LOC101928068
8    chr1  244994929      245301077     NR_132782      SNORA100
9   chr18   24717239       24828609  NM_001256316         CHST9
10   chr5   99835991       99963217     NM_198507       FAM174A
11   chr8    7899644        8140713     NR_024361      FAM86B3P
14   chr8    7899644        8140713     NR_031689      MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr17   14140386       14486055     NM_006041     HS3ST3B1
1   chr17   14140386       14486055     NR_026880     MGC12916
2    chr2  107678920      110228840  NM_001008743      SULT1C3
3    chr2  107678920      110228840     NM_001056      SULT1C2
4    chr2  107678920      110228840  NM_001099289       SH3RF3
5    chr2  107678920      110228840  NM_001193482        LIMS1
10   chr2  107678920      110228840  NM_001303106      CCDC138
11   chr2  107678920      110228840  NM_001305006       SLC5A7
14   chr2  107678920      110228840     NM_006267       RANBP2
15   chr2  107678920      110228840     NM_006588      SULT1C4
16   chr2  107678920      110228840     NM_022336         EDAR
17   chr2  107678920      110228840     NM_182588        RGPD4
18   chr2  107678920      110228840     NR_024439    RGPD4-AS1
19   chr2  107678920      110228840     NR_028063         GCC2
20   chr2  107678920      110228840     NR_029193   SH3RF3-AS1
21   chr2  107678920      110228840     NR_036223      MIR4265
22   chr2  107678920      110228840     NR_036224      MIR4266
23   chr2  107678920      110228840     NR_037191    SULT1C2P1
24   chr2  107678920      110228840     NR_049853     MIR548AU
25   chr2  107678920      110228840     NR_126369       GACAT1
27   chr2  107678920      110228840     NR_131251    LINC01594
28   chr2  107678920      110228840     NR_135071    LINC01593
29   chr2  107678920      110228840     NR_135290     GCC2-AS1
30  chr20   14652980       14984314     NM_080676      MACROD2
31  chr20   14652980       14984314     NR_037841  MACROD2-AS1
33   chr7  110382451      110486954  NM_001244606       IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   27639554       27855455  NM_001034842        PTCHD3
1  chr10   27639554       27855455  NM_001256411         RAB18
2   chr2   36288425       36755916     NM_016441         CRIM1
3   chr2   36288425       36755916     NR_037631  LOC100288911
4   chr2  236690904      236830682  NM_001244888         AGAP1
6   chr5  151322903      151834116     NM_020167         NMUR2
7   chr5  151322903      151834116     NR_109876    CTB-12O2.1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  120516935      121143062     NM_000928       PLA2G1B
1   chr12  120516935      121143062  NM_001033677         CABP1
2   chr12  120516935      121143062  NM_001037494        DYNLL1
3   chr12  120516935      121143062  NM_001167606         RAB35
4   chr12  120516935      121143062  NM_001303627          MLEC
6   chr12  120516935      121143062  NM_001330474         RNF10
7   chr12  120516935      121143062     NM_002442          MSI1
8   chr12  120516935      121143062     NM_002859           PXN
10  chr12  120516935      121143062     NM_003769         SRSF9
12  chr12  120516935      121143062     NM_004373        COX6A1
13  chr12  120516935      121143062     NM_006836          GCN1
14  chr12  120516935      121143062     NM_012240         SIRT4
16  chr12  120516935      121143062     NM_015918          POP5
17  chr12  120516935      121143062     NM_016399        TRIAP1
19  chr12  120516935      121143062     NM_032314          COQ5
20  chr12  120516935      121143062     NM_053275         RPLP0
21  chr12  120516935      121143062     NM_176818          GATC
23  chr12  120516935      121143062     NM_207311        BICDL1
24  chr12  120516935      121143062     NR_038854          NRAV
25  chr12  120516935      121143062     NR_038924       PXN-AS1
26  chr12  120516935      121143062     NR_039719       MIR4498
27  chr20   10817502       10938610     NR_109866  LOC101929413
28   chr7   29524668       29636180  NM_001293069          CHN2
32   chr7   29524668       29636180  NM_001329997         PRR15
35   chr9   17145794       17435670  NM_001114395         CNTLN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4155074        4266590     NM_001033          RRM1
2   chr11    4155074        4266590     NR_047550  LOC100506082
3   chr15   77688446       77813275  NM_001304505        HMG20A
4   chr15   77688446       77813275     NM_024776         PEAK1
5   chr19     892459        1061544     NM_005224        ARID3A
6   chr19     892459        1061544     NM_005481         MED16
7   chr19     892459        1061544     NM_019112         ABCA7
8   chr19     892459        1061544     NM_024100         WDR18
9   chr19     892459        1061544     NM_032551        KISS1R
10  chr19     892459        1061544     NM_033420       TMEM259
11  chr19     892459        1061544     NM_138690        GRIN3B
12  chr19     892459        1061544     NM_138774        R3HDM4
13  chr19     892459        1061544     NM_201277          CNN2
14  chr19     892459        1061544     NR_125730        RNU6-2
16   chr7  110731451      110839152  NM_001099658         LRRN3
17   chr7  110731451      110839152  NM_001244606        IMMP2L
19   chr8    7034571        8524649  NM_001040705      DEFB107B
21   chr8    7034571        8524649  NM_001080826         PRAG1
22   chr8    7034571        8524649  NM_001081551      DEFB103A
24   chr8    7034571        8524649  NM_001081552       SPAG11A
25   chr8    7034571        8524649  NM_001164457       ZNF705G
26   chr8    7034571        8524649  NM_001193630       ZNF705B
27   chr8    7034571        8524649  NM_001205266        DEFB4B
28   chr8    7034571        8524649  NM_001256871       USP17L3
29   chr8    7034571        8524649  NM_001256872       USP17L8
30   chr8    7034571        8524649  NM_001256873       USP17L1
31   chr8    7034571        8524649  NM_001256874       USP17L4
32   chr8    7034571        8524649  NM_001282478       PRR23D2
34   chr8    7034571        8524649  NM_001282479       PRR23D1
36   chr8    7034571        8524649     NM_004942        DEFB4A
37   chr8    7034571        8524649     NM_058200       SPAG11B
42   chr8    7034571        8524649     NM_080389      DEFB104A
44   chr8    7034571        8524649     NM_152250      DEFB105A
46   chr8    7034571        8524649     NM_152251      DEFB106A
48   chr8    7034571        8524649     NR_003668    DEFB109P1B
50   chr8    7034571        8524649     NR_024361      FAM86B3P
53   chr8    7034571        8524649     NR_027000     LINC00965
56   chr8    7034571        8524649     NR_027423        FAM66B
57   chr8    7034571        8524649     NR_027424        FAM66E
58   chr8    7034571        8524649     NR_031689      MIR548I3
59   chr8    7034571        8524649     NR_046343      FAM90A7P
61   chr8    7034571        8524649     NR_046351     FAM90A10P,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    1137966        1257454  NM_001304359     MUC5AC
1   chr11    1137966        1257454     NM_002458      MUC5B
2   chr12   81004542       81182684  NM_001145026      PTPRQ
3   chr12   81004542       81182684     NM_002469       MYF6
4   chr12   81004542       81182684     NM_005593       MYF5
5   chr12   81004542       81182684     NR_120468  LINC01490
6   chr14   47800455       48011544  NM_001113498      MDGA2
9   chr16   29556169       29698632  NM_001030288        SPN
10  chr16   29556169       29698632  NM_001318249       QPRT
12  chr16   29556169       29698632     NR_049833  MIR3680-2
13  chr16   29556169       29698632     NR_135305     SMG1P2
15  chr20   14619895       14794583     NM_080676    MACROD2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88954151       90035310  NM_001099338      NUTM2A
1   chr10   88954151       90035310  NM_001126049        KLLN
2   chr10   88954151       90035310  NM_001178118      MINPP1
3   chr10   88954151       90035310  NM_001304718        PTEN
4   chr10   88954151       90035310  NM_001321968       ATAD1
5   chr10   88954151       90035310     NM_004670      PAPSS2
7   chr10   88954151       90035310     NM_018363        RNLS
8   chr10   88954151       90035310     NR_024397  NUTM2A-AS1
9   chr10   88954151       90035310     NR_028492      CFL1P1
10  chr10   88954151       90035310     NR_029408   LINC00863
11  chr10   88954151       90035310     NR_039825     MIR4678
12  chr10   88954151       90035310     NR_046091   LINC00864
13  chr10   88954151       90035310     NR_075100      NUTM2D
15  chr13   63109293       63412034     NR_047029   LINC00448
18   chr2  107667325      107784636     NR_049853    MIR548AU
19   chr6  162537348      162651071     NM_013988       PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83504927       83955197  NM_001142699          DLG2
4   chr14   21879074       21980804  NM_001163380         RAB2B
5   chr14   21879074       21980804  NM_001170629          CHD8
6   chr14   21879074       21980804  NM_001303523          TOX4
7   chr14   21879074       21980804     NM_019852        METTL3
10   chr2   78277042       78432513     NR_110287  LOC101927948
11   chr2   78277042       78432513     NR_110288  LOC101927967
12   chr7    4057007        4248131  NM_001079653          SDK1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  110663923      110997911  NM_001099658     LRRN3
1  chr7  110663923      110997911  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   71716559       71862318  NR_047699  LINC00348
1   chr9   88394499       88523939  NR_029410  LOC389765,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241733121      242002424     NM_001821          CHML
1    chr1  241733121      242002424     NM_003679           KMO
2    chr1  241733121      242002424     NM_014322          OPN3
3    chr1  241733121      242002424     NM_144625         WDR64
4   chr13   63169180       63520961     NR_047029     LINC00448
7    chr2  130598963      130772132     NM_032144         RAB6C
8    chr2  130598963      130772132     NR_026740     LOC389033
9    chr2  130598963      130772132     NR_036537     RAB6C-AS1
10   chr2  130598963      130772132     NR_110285  LOC101927924
11   chr3   60330124       60537098  NM_001320899          FHIT
12   chr4  169226914      170393112  NM_001012967        DDX60L
13   chr4  169226914      170393112  NM_001166108         PALLD
17   chr4  169226914      170393112     NM_012224          NEK1
18   chr4  169226914      170393112     NM_017631         DDX60
19   chr4  169226914      170393112     NM_020870        SH3RF1
20   chr4  169226914      170393112     NM_032783          CBR4,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr1  108392558      108517023  NM_006113       VAV3
1  chr1  108392558      108517023  NR_046653   VAV3-AS1
2  chr1  108392558      108517023  NR_107006    MIR7852
3  chr3     786408         923795  NR_110118  LINC01266,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr12   71571362       71920204  NM_001277227       LGR5
1  chr13   63147573       63260321     NR_047029  LINC00448
2  chr15   28519164       28620433     NM_004667      HERC2
3  chr16   21810369       22001767  NM_001310148     NPIPB4
4  chr16   21810369       22001767     NM_003366     UQCRC2
5  chr16   21810369       22001767     NM_173806      PDZD9
6  chr16   21810369       22001767     NR_003370     RRN3P1
7   chr9   41443982       41556007  NM_001113541  SPATA31A5
8   chr9   41443982       41556007     NM_015667  SPATA31A7
9   chr9   41443982       41556007     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145033303      145138905  NM_001198832       PDE4DIP
1    chr1  145033303      145138905  NM_001277444         NBPF9
2    chr1  145033303      145138905  NM_001278267        NBPF20
3    chr1  145033303      145138905     NM_004892        SEC22B
5   chr16   21466812       21603836     NR_002594      SLC7A5P2
6   chr16   21466812       21603836     NR_027155        SMG1P3
7   chr16   21466812       21603836     NR_049833     MIR3680-2
8   chr16   21466812       21603836     NR_110930  LOC101927814
9    chr6    5163907        5430930  NM_001164840         LYRM4
11   chr6    5163907        5430930  NM_001318872         FARS2
14   chr6    5163907        5430930     NR_126015     LYRM4-AS1
16   chr6   20970564       21523431     NM_017774        CDKAL1
17   chr6   20970564       21523431     NR_103790     LINC00581,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1   72280041       72426959     NM_173808      NEGR1
1  chr1   72280041       72426959     NR_046218  NEGR1-IT1
2  chr7  110607053      110758436  NM_001099658      LRRN3
3  chr7  110607053      110758436  NM_001244606     IMMP2L
5  chr9   31269710       31580914     NR_135134  LINC01243
6  chr9   39027192       39243188     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67279145       67560059     NM_000695       ALDH3B2
1   chr11   67279145       67560059     NM_000852         GSTP1
3   chr11   67279145       67560059  NM_001166102        NDUFV1
4   chr11   67279145       67560059  NM_001243750         NUDT8
5   chr11   67279145       67560059  NM_001318496         CABP2
6   chr11   67279145       67560059     NM_005995         TBX10
7   chr11   67279145       67560059     NM_080658          ACY3
9   chr11   67279145       67560059     NR_024249      FAM86C2P
10  chr11   67279145       67560059     NR_033791        DOC2GP
11  chr11   67279145       67560059     NR_130935      C11orf72
12  chr21   23419929       23698568     NR_038400     LINC00308
13  chr21   23419929       23698568     NR_109959  LOC101927843
14   chr7   16664252       16837421  NM_001159767          BZW2
15   chr7   16664252       16837421     NM_006408          AGR2
16   chr7   16664252       16837421     NM_014399       TSPAN13
17   chr7   16664252       16837421     NM_020319        ANKMY2
18   chr7  108456276      108787544  NM_001024607       C7orf66,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1  242681819      242920505     NM_152666       PLD5
1  chr6   92075892       92398167     NR_039786    MIR4643
2  chr6   92075892       92398167     NR_104154      CASC6
3  chr7  110540211      110695467  NM_001244606     IMMP2L
5  chr9   39052110       39357194  NM_001085452  SPATA31A1
6  chr9   39052110       39357194     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49655568       50616151  NM_001144775        ELAVL4
4    chr1   49655568       50616151  NM_001323575         AGBL4
8    chr1   49655568       50616151     NR_046839     AGBL4-IT1
9    chr1   49655568       50616151     NR_125988  LOC101929721
10  chr10    7107145        7210412  NM_001018039        SFMBT2
12   chr6  162600488      162835392     NM_013988         PARK2
13   chr7  133238686      133346060     NM_021807         EXOC4
14   chr9    2533030        2844179     NM_003383         VLDLR
15   chr9    2533030        2844179     NM_014878          PUM3
16   chr9    2533030        2844179     NM_133497         KCNV2
17   chr9    2533030        2844179     NR_015375     VLDLR-AS1
18   chr9  116618131      116719746  NM_001318041        ZNF618,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143131632      143239481     NR_110761  LOC102723769
1   chr19   47803766       48109660  NM_001009813         MEIS3
2   chr19   47803766       48109660  NM_001271749         C5AR2
4   chr19   47803766       48109660  NM_001277075        ZNF541
5   chr19   47803766       48109660  NM_001291296          KPTN
8   chr19   47803766       48109660     NM_001736         C5AR1
9   chr19   47803766       48109660     NM_014681         DHX34
10  chr19   47803766       48109660     NM_015063        SLC8A2
12  chr19   47803766       48109660     NR_038452      NAPA-AS1
13  chr19   47803766       48109660     NR_038457          NAPA
14   chr2   51201538       51801741  NM_001330079         NRXN1
17   chr2   51201538       51801741     NR_135237     LOC730100
18   chr3    1363232        1974343  NM_001289081         CNTN6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   37599302       37700760  NM_001171170      SLC25A21
1   chr14   37599302       37700760  NM_001195296        MIPOL1
2   chr14   37599302       37700760     NR_033240  SLC25A21-AS1
3   chr16    6475476        6598403  NM_001308117        RBFOX1
5   chr20   14573638       14849832     NM_080676       MACROD2
6   chr20   14573638       14849832     NR_104193   MACROD2-IT1
7   chr21   23080208       23465681     NR_038872     LINC00317
8   chr21   23080208       23465681     NR_109958     LINC01425
9   chr21   23080208       23465681     NR_109959  LOC101927843
10   chr5   20375217       20507009  NM_001291956         CDH18,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67892810       68041537  NM_001127384    CTNNA3
2   chr3    7045596        7302057     NM_181874      GRM7,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   45443373       45560314  NM_001308120   FAM179B
1  chr14   45443373       45560314     NM_017922    PRPF39
2  chr18   63800723       64366596     NM_021153     CDH19
3   chr2  134068874      134213581     NM_207363    NCKAP5
4   chr5   59641100       60021906  NM_001145208   DEPDC1B
5   chr5   59641100       60021906  NM_001165899     PDE4D
6   chr5   59641100       60021906     NR_024617     PART1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   36141181       36268796     NR_038251   DPH6-AS1
1   chr15   36141181       36268796     NR_039735    MIR4510
2   chr16   16439226       16802855  NM_001282511     NPIPA8
3   chr16   16439226       16802855     NR_036447     PKD1P1
4   chr16   16439226       16802855     NR_106971  MIR6511A4
5    chr2  212911041      213127037  NM_001042599      ERBB4
6   chr20   25321266       25434896  NM_001042472     ABHD12
7   chr20   25321266       25434896  NM_001318226       NINL
9   chr20   25321266       25434896     NM_021067      GINS1
10   chr7  143080059      143344643  NM_001008747    CTAGE15
11   chr7  143080059      143344643  NM_001130025      TCAF2
12   chr7  143080059      143344643     NM_003461        ZYX
13   chr7  143080059      143344643     NM_005232      EPHA1
15   chr7  143080059      143344643     NM_176883    TAS2R41
16   chr7  143080059      143344643     NM_177437    TAS2R60
17   chr7  143080059      143344643     NR_033897  EPHA1-AS1
18   chr7  143080059      143344643     NR_110549    TCAF2P1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr17   21888541       22102004  NM_001190452     MTRNR2L1
1  chr17   21888541       22102004     NR_027084     FLJ36000
2  chr20   14668517       14903399     NM_080676      MACROD2
3  chr20   14668517       14903399     NR_037841  MACROD2-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   47868657       48049215  NM_001113498     MDGA2
1  chr16   83928454       84176204  NM_001080442   SLC38A8
2  chr16   83928454       84176204  NM_001146051     HSDL1
3  chr16   83928454       84176204     NM_003791    MBTPS1
4  chr16   83928454       84176204     NM_012213     MLYCD
5  chr16   83928454       84176204     NM_019065    NECAB2
6  chr16   83928454       84176204     NM_182981    OSGIN1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   52759929       53117283  NM_001142495      MYO5A
1   chr15   52759929       53117283  NM_001286495    FAM214A
2   chr15   52759929       53117283  NM_001306191     ARPP19
6   chr15   52759929       53117283     NM_004498    ONECUT1
9   chr19   24207782       24415248  NM_001278661     ZNF254
12  chr19   24207782       24415248     NR_003603   HAVCR1P1
13   chr5   66218821       66328056  NM_001164664      MAST4
18   chr5   66218821       66328056     NR_111908  MAST4-AS1
19   chr9   28546509       28699439  NM_001258282     LINGO2
21   chr9   43044381       43401373  NM_001012419  ANKRD20A3
22   chr9   43044381       43401373  NM_001012421  ANKRD20A2
23   chr9   43044381       43401373     NR_027472  LOC642929,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   48290572       48581642  NM_001004702     OR4C3
1   chr11   48290572       48581642  NM_001004725     OR4S1
2   chr11   48290572       48581642  NM_001005512    OR4A47
3   chr11   48290572       48581642  NM_001005513    OR4C45
4   chr16    6769528        6940001  NM_001142334    RBFOX1
7   chr17     324070         521189  NM_001128159     VPS53
9    chr2  133048927      133153635  NM_001304449    ZNF806
10   chr2  133048927      133153635     NR_135203   FAM201B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16    6677871        7126212  NM_001142334     RBFOX1
3   chr16   10473148       10622359  NM_001256160    ATF7IP2
4   chr16   10473148       10622359     NM_001424       EMP2
6    chr5   66244576       66413956  NM_001164664      MAST4
11   chr5   66244576       66413956     NR_111908  MAST4-AS1
12   chr6   91031489       91788166     NM_145332     MAP3K7
13   chr7   64096266       64240044  NM_001282360     ZNF107
15   chr7   64096266       64240044     NR_106898    MIR6839
16   chr7   75717617       75820327     NR_135079    GTF2IP7,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  152440612      152725879  NM_001024679   C1orf68
1   chr1  152440612      152725879     NM_014357     LCE2B
2   chr1  152440612      152725879     NM_019060     CRCT1
3   chr1  152440612      152725879     NM_032563     LCE3D
4   chr1  152440612      152725879     NM_178356     LCE4A
5   chr1  152440612      152725879     NM_178428     LCE2A
6   chr1  152440612      152725879     NM_178429     LCE2C
7   chr1  152440612      152725879     NM_178430     LCE2D
8   chr1  152440612      152725879     NM_178431     LCE3A
9   chr1  152440612      152725879     NM_178433     LCE3B
10  chr1  152440612      152725879     NM_178434     LCE3C
11  chr1  152440612      152725879     NM_178435     LCE3E
12  chr1  152440612      152725879     NM_178438     LCE5A
13  chr3  189561305      189990142  NM_001114979      TP63
15  chr3  189561305      189990142  NM_001134418      P3H2
20  chr3  189561305      189990142     NR_126419  P3H2-AS1
21  chr6   89406594       89529521  NM_001286428     RNGTT
22  chr7  110616327      110743870  NM_001099658     LRRN3
23  chr7  110616327      110743870  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   40363341       40498650  NM_001145079          COG6
1   chr16   21543041       21690135  NM_001077180        METTL9
3   chr16   21543041       21690135     NM_005849         IGSF6
4   chr16   21543041       21690135     NM_144672          OTOA
5   chr16   21543041       21690135     NR_110930  LOC101927814
6   chr16   80776690       81042433  NM_001100625         CENPN
9   chr16   80776690       81042433     NM_020188          CMC2
10  chr16   80776690       81042433     NM_152342         CDYL2
11  chr16   80776690       81042433     NR_131948       PRCAT47
12   chr3  101148167      101420424     NM_000986         RPL24
13   chr3  101148167      101420424  NM_001282803         SENP7
15   chr3  101148167      101420424  NM_001320399          PCNP
16   chr3  101148167      101420424     NM_014415        ZBTB11
17   chr3  101148167      101420424     NM_017819       TRMT10C
18   chr3  101148167      101420424     NR_024407    ZBTB11-AS1
19   chr3  101148167      101420424     NR_036433      FAM172BP
20   chr6  119711672      119880757     NR_046100     LOC285762
21   chr6  119711672      119880757     NR_134600  LOC105377975,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   16248094       16440472  NM_001170798   SLC15A5
1  chr12   17799396       17945183     NR_039770   MIR3974
2   chr7    3274005        3418112     NM_152744      SDK1
3   chr9   41866471       41991292     NR_003670    FGF7P3
4   chr9   41866471       41991292     NR_015363     GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   24410462       24537146     NR_026647         PWRN2
1   chr15   30307106       30825516  NM_001282472       GOLGA8J
2   chr15   30307106       30825516  NM_001282484       GOLGA8R
3   chr15   30307106       30825516     NM_139320      CHRFAM7A
4   chr15   30307106       30825516     NR_026771  DKFZP434L187
5   chr15   30307106       30825516     NR_026859        ULK4P3
6   chr15   30307106       30825516     NR_033933       GOLGA8T
7   chr18   40184431       41716564     NM_002930          RIT2
8   chr18   40184431       41716564     NM_020783          SYT4
9   chr18   40184431       41716564     NR_046174     LINC00907
10  chr20   14644503       15278657  NM_001033087       MACROD2
12  chr20   14644503       15278657     NR_037841   MACROD2-AS1
14  chr20   14864430       14998404     NM_080676       MACROD2
15  chr20   14864430       14998404     NR_037841   MACROD2-AS1
17   chr4   81847214       81962612     NM_001201          BMP3
18   chr4   81847214       81962612  NM_001206997       C4orf22
19   chr7    4141174        5462529  NM_001033518         WIPI2
21   chr7    4141174        5462529  NM_001037165         FOXK1
22   chr7    4141174        5462529  NM_001040661       SLC29A4
23   chr7    4141174        5462529  NM_001079653          SDK1
24   chr7    4141174        5462529  NM_001080495        TNRC18
25   chr7    4141174        5462529  NM_001100600          MMD2
26   chr7    4141174        5462529  NM_001204456          RBAK
27   chr7    4141174        5462529  NM_001204513   RBAK-RBAKDN
28   chr7    4141174        5462529     NM_014855         AP5Z1
29   chr7    4141174        5462529     NM_018059         RADIL
30   chr7    4141174        5462529     NM_020144        PAPOLB
33   chr7    4141174        5462529     NR_015343        RBAKDN
34   chr7    4141174        5462529     NR_015449      RNF216P1
35   chr7    4141174        5462529     NR_034163       ZNF890P
36   chr7    4141174        5462529     NR_039800       MIR4656,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81442076       81568045  NM_001278495        NUTM2B
1   chr10   81442076       81568045     NR_027512       BEND3P3
2   chr10   81442076       81568045     NR_120611    NUTM2B-AS1
5    chr4     493824        1677639     NM_000203          IDUA
6    chr4     493824        1677639     NM_000283         PDE6B
7    chr4     493824        1677639  NM_001004356        FGFRL1
9    chr4     493824        1677639  NM_001013622        FAM53A
10   chr4     493824        1677639  NM_001128325         SPON2
11   chr4     493824        1677639  NM_001131034        RNF212
16   chr4     493824        1677639  NM_001289053          PIGG
17   chr4     493824        1677639  NM_001290079        NKX1-1
18   chr4     493824        1677639  NM_001294341         MFSD7
19   chr4     493824        1677639  NM_001297423       TMEM175
20   chr4     493824        1677639  NM_001297432          MAEA
23   chr4     493824        1677639  NM_001317836         PCGF3
24   chr4     493824        1677639  NM_001317934         UVSSA
26   chr4     493824        1677639  NM_001318134           GAK
27   chr4     493824        1677639     NM_001328         CTBP1
28   chr4     493824        1677639     NM_001347          DGKQ
29   chr4     493824        1677639     NM_002477          MYL5
30   chr4     493824        1677639     NM_006651         CPLX1
31   chr4     493824        1677639     NM_007100         ATP5I
35   chr4     493824        1677639     NM_022042       SLC26A1
37   chr4     493824        1677639     NM_175918        CRIPAK
38   chr4     493824        1677639     NR_024569  LOC100130872
39   chr4     493824        1677639     NR_033339     CTBP1-AS2
40   chr4     493824        1677639     NR_033768       TMED11P
41   chr4     493824        1677639     NR_036511  LOC100129917
42   chr4     493824        1677639     NR_104331      CTBP1-AS
45   chr4     493824        1677639     NR_134676  LOC105374344
47   chr4   71333753       73807201     NM_000583            GC
48   chr4   71333753       73807201     NM_000788           DCK
49   chr4   71333753       73807201  NM_001037442         RUFY3
50   chr4   71333753       73807201  NM_001098477         GRSF1
51   chr4   71333753       73807201  NM_001098484        SLC4A4
53   chr4   71333753       73807201  NM_001145006          MUC7
57   chr4   71333753       73807201  NM_001244766         MOB1B
59   chr4   71333753       73807201  NM_001286731          AMTN
65   chr4   71333753       73807201     NM_004885        NPFFR2
66   chr4   71333753       73807201     NM_014243       ADAMTS3
67   chr4   71333753       73807201     NM_016519          AMBN
68   chr4   71333753       73807201     NM_020368          UTP3
69   chr4   71333753       73807201     NM_031889          ENAM
71   chr4   71333753       73807201     NM_144646        JCHAIN
73   chr9   39066669       39283433     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   16337624       16442713  NM_001170798   SLC15A5
1   chr4   93796582       93946937     NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245012521      245258258  NM_001143943        EFCAB2
2    chr1  245012521      245258258     NM_004501        HNRNPU
4    chr1  245012521      245258258     NR_111907  LOC101928068
5    chr1  245012521      245258258     NR_132782      SNORA100
6   chr16   79754473       79863705     NR_104660     LINC01229
8   chr16   79754473       79863705     NR_104663        MAFTRR
9    chr2  117667360      118770851     NM_006773         DDX18
10   chr2  117667360      118770851     NM_019044        CCDC93
11   chr7  125731495      129258585     NM_000230           LEP
12   chr7  125731495      129258585     NM_000883        IMPDH1
13   chr7  125731495      129258585  NM_001098627          IRF5
14   chr7  125731495      129258585  NM_001098786        HILPDA
15   chr7  125731495      129258585  NM_001127323          GRM8
16   chr7  125731495      129258585  NM_001130720        AHCYL2
19   chr7  125731495      129258585  NM_001134336        STRIP2
20   chr7  125731495      129258585  NM_001135914           KCP
22   chr7  125731495      129258585  NM_001174164         PRRT4
23   chr7  125731495      129258585  NM_001195150  LOC100130705
24   chr7  125731495      129258585  NM_001195243         SMKR1
25   chr7  125731495      129258585  NM_001199672          CALU
26   chr7  125731495      129258585  NM_001201372       CCDC136
28   chr7  125731495      129258585  NM_001290254       FAM71F2
30   chr7  125731495      129258585  NM_001293163          NRF1
32   chr7  125731495      129258585     NM_001458          FLNC
33   chr7  125731495      129258585     NM_001662          ARF5
34   chr7  125731495      129258585     NM_001708        OPN1SW
35   chr7  125731495      129258585     NM_004231       ATP6V1F
36   chr7  125731495      129258585     NM_005631           SMO
37   chr7  125731495      129258585     NM_006193          PAX4
38   chr7  125731495      129258585     NM_014390          SND1
39   chr7  125731495      129258585     NM_018077         RBM28
40   chr7  125731495      129258585     NM_018396       METTL2B
41   chr7  125731495      129258585     NM_020369         FSCN3
43   chr7  125731495      129258585     NM_022143         LRRC4
45   chr7  125731495      129258585     NM_024523          GCC1
46   chr7  125731495      129258585     NM_032599       FAM71F1
48   chr7  125731495      129258585     NM_176814        ZNF800
49   chr7  125731495      129258585     NM_178562       TSPAN33
51   chr7  125731495      129258585     NR_002144     LOC407835
52   chr7  125731495      129258585     NR_002187        TPI1P2
53   chr7  125731495      129258585     NR_024368     LINC01000
54   chr7  125731495      129258585     NR_027330      SND1-IT1
56   chr7  125731495      129258585     NR_029596      MIR129-1
57   chr7  125731495      129258585     NR_030323        MIR592
58   chr7  125731495      129258585     NR_030324        MIR593
59   chr7  125731495      129258585     NR_034053         TNPO3
60   chr7  125731495      129258585     NR_046216      MGC27345
62   chr7  125731495      129258585     NR_110024  LOC100506682
63   chr7  125731495      129258585     NR_110194  LOC101928333
64   chr8    2041684        2155480     NM_003970         MYOM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  128530823      128644013     NR_104647  LOC100996679
1   chr12  128530823      128644013     NR_104648  LOC101927694
2   chr16    6671561        6815339  NM_001308117        RBFOX1
4   chr16   21539756       21776121  NM_001077180        METTL9
5   chr16   21539756       21776121  NM_001161683          OTOA
7   chr16   21539756       21776121     NM_005849         IGSF6
10  chr16   21539756       21776121     NR_110930  LOC101927814
11  chr16   21558520       24053449     NM_000336        SCNN1B
12  chr16   21558520       24053449     NM_001039        SCNN1G
13  chr16   21558520       24053449  NM_001077180        METTL9
14  chr16   21558520       24053449  NM_001135865        NPIPB5
15  chr16   21558520       24053449  NM_001161683          OTOA
16  chr16   21558520       24053449  NM_001164579      C16orf52
17  chr16   21558520       24053449  NM_001199011         DCTN5
19  chr16   21558520       24053449  NM_001258033        POLR3E
21  chr16   21558520       24053449  NM_001308211         EARS2
22  chr16   21558520       24053449  NM_001310148        NPIPB4
23  chr16   21558520       24053449     NM_001802          CDR2
24  chr16   21558520       24053449     NM_002738         PRKCB
25  chr16   21558520       24053449     NM_003366        UQCRC2
26  chr16   21558520       24053449     NM_005003       NDUFAB1
27  chr16   21558520       24053449     NM_005030          PLK1
28  chr16   21558520       24053449     NM_005849         IGSF6
29  chr16   21558520       24053449     NM_006043        HS3ST2
30  chr16   21558520       24053449     NM_013302         EEF2K
31  chr16   21558520       24053449     NM_015044          GGA2
32  chr16   21558520       24053449     NM_019116         UBFD1
33  chr16   21558520       24053449     NM_020718         USP31
34  chr16   21558520       24053449     NM_022097          CHP2
35  chr16   21558520       24053449     NM_024675         PALB2
36  chr16   21558520       24053449     NM_033266          ERN2
38  chr16   21558520       24053449     NM_153603          COG7
40  chr16   21558520       24053449     NM_173615         VWA3A
41  chr16   21558520       24053449     NM_173806         PDZD9
42  chr16   21558520       24053449     NR_003370        RRN3P1
44  chr16   21558520       24053449     NR_003676     LOC653786
45  chr16   21558520       24053449     NR_027154        SMG1P1
46  chr16   21558520       24053449     NR_027460        RRN3P3
47  chr16   21558520       24053449     NR_110930  LOC101927814
48  chr16   21558520       24053449     NR_136333       MFSD13B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  132037544      132313423  NM_001012393         OPCML
1   chr11  132037544      132313423  NM_001048209           NTM
6   chr11  132037544      132313423     NR_046820        NTM-IT
7   chr12   16330226       16753235  NM_001001395          LMO3
8   chr12   16330226       16753235  NM_001170798       SLC15A5
13  chr12   16330226       16753235  NM_001267598         MGST1
19   chr4  108694719      109139013  NM_001136258         SGMS2
20   chr4  108694719      109139013  NM_001166119          LEF1
21   chr4  108694719      109139013  NM_001184705          HADH
25   chr4  108694719      109139013     NM_183075        CYP2U1
26   chr4  108694719      109139013     NR_029373      LEF1-AS1
28   chr4  108694719      109139013     NR_125929  LOC101929595,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr8  111922454      114417383  NM_198123      CSMD3
2  chr8  111922454      114417383  NR_031745    MIR2053
3  chr8  111922454      114417383  NR_125416  LINC01608
5  chr8  111922454      114417383  NR_125418  LINC01609,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244984177      245428471  NM_001143943        EFCAB2
2    chr1  244984177      245428471  NM_001312871         COX20
4    chr1  244984177      245428471     NM_004501        HNRNPU
5    chr1  244984177      245428471     NM_018012        KIF26B
8    chr1  244984177      245428471     NR_111907  LOC101928068
9    chr1  244984177      245428471     NR_132782      SNORA100
10  chr12  130222531      130735271     NM_007197         FZD10
11  chr12  130222531      130735271     NM_133448      TMEM132D
12  chr12  130222531      130735271     NR_024457  LOC100190940
13  chr12  130222531      130735271     NR_033834     FZD10-AS1
14  chr12  130230472      130343647     NM_133448      TMEM132D
15  chr13   63078592       63253230     NR_047029     LINC00448
16   chr5   59768194       59895784  NM_001145208       DEPDC1B
17   chr5   59768194       59895784  NM_001165899         PDE4D
18   chr5   59768194       59895784     NR_024617         PART1
21   chr7   64074797       64183700  NM_001282360        ZNF107
22   chr7   64074797       64183700     NR_077227  LOC100128885
24   chr7   64074797       64183700     NR_106898       MIR6839
25   chr7   64047109       64238507  NM_001282360        ZNF107
26   chr7   64047109       64238507     NR_077227  LOC100128885
28   chr7   64047109       64238507     NR_106898       MIR6839
29   chr9   44310862       44515600     NR_121564  LOC101927827
30   chr9   44310862       44515600     NR_126050  LOC103908605,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr14   67434778       67610424     NM_020806         GPHN
1  chr20   14751093       15123567     NM_080676      MACROD2
2  chr20   14751093       15123567     NR_037841  MACROD2-AS1
4   chr3   65790234       66036767  NM_001033057        MAGI1
6   chr3   65790234       66036767     NR_046575    MAGI1-AS1, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12788991       13004879  NM_001009611       PRAMEF4
1    chr1   12788991       13004879  NM_001010889       PRAMEF6
2    chr1   12788991       13004879  NM_001010890       PRAMEF9
3    chr1   12788991       13004879  NM_001012276       PRAMEF8
4    chr1   12788991       13004879  NM_001013631      HNRNPCL1
5    chr1   12788991       13004879  NM_001080830      PRAMEF12
6    chr1   12788991       13004879  NM_001146181      HNRNPCL3
7    chr1   12788991       13004879  NM_001146344      PRAMEF11
8    chr1   12788991       13004879  NM_001294139       PRAMEF1
9    chr1   12788991       13004879  NM_001302551      HNRNPCL4
11   chr1   12788991       13004879     NM_023014       PRAMEF2
12   chr1   12788991       13004879     NM_152290      C1orf158
13  chr14   21861360       21969257  NM_001163380         RAB2B
14  chr14   21861360       21969257  NM_001170629          CHD8
15  chr14   21861360       21969257  NM_001303523          TOX4
16  chr14   21861360       21969257     NM_019852        METTL3
19  chr14   21861360       21969257     NR_002916        SNORD8
20   chr2  153118996      153307607     NM_052905         FMNL2
21   chr4   69315288       69441455     NM_001077       UGT2B17
22   chr4   69315288       69441455     NM_014058     TMPRSS11E
23   chr7   57282986       57408755     NR_136269  LOC105375297,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   31429328       31727938  NM_001304274     IMMP1L
1  chr11   31429328       31727938     NM_019040       ELP4
2  chr11   31429328       31727938     NM_181706    DNAJC24
3   chr4  189180231      189643718     NR_033869  LINC01060,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48306109       48450111  NM_001004702         OR4C3
1   chr11   48306109       48450111  NM_001004725         OR4S1
2   chr11   48306109       48450111  NM_001005513        OR4C45
3   chr11   67344188       67485229     NM_000695       ALDH3B2
4   chr11   67344188       67485229     NM_000852         GSTP1
6   chr11   67344188       67485229  NM_001166102        NDUFV1
7   chr11   67344188       67485229  NM_001243750         NUDT8
8   chr11   67344188       67485229     NM_005995         TBX10
9   chr11   67344188       67485229     NM_080658          ACY3
11  chr11   67344188       67485229     NR_033791        DOC2GP
12  chr11   67344188       67485229     NR_130935      C11orf72
13   chr6   90200939       90404346  NM_001242809        ANKRD6
16   chr6   90200939       90404346     NM_014611          MDN1
17   chr6   90200939       90404346     NM_020466         LYRM2
19   chr6   90200939       90404346     NR_111915  LOC101929057,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   83560215       83697640  NM_001142699          DLG2
4   chr6  119773810      119892436     NR_046100     LOC285762
5   chr6  119773810      119892436     NR_134600  LOC105377975
6   chr7  118496512      120342906     NM_012281         KCND2
7   chr7  118496512      120342906     NR_131960        LVCAT5,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   86740417       86967638  NM_001168724       TMEM135
1  chr13   22394360       22573246     NR_047040     LINC00424
2   chr2   22235094       23814093     NM_052920        KLHL29
3   chr2   22235094       23814093     NR_110577  LOC102723362
4   chr9   41879410       42172497     NR_003670        FGF7P3
5   chr9   41879410       42172497     NR_015363         GLIDR
8   chr9   41879410       42172497     NR_126048  LOC102724238
9   chr9   41879410       42172497     NR_126049     LOC554249,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr2  118011467      119301130  NM_001321332     INSIG2
2  chr2  118011467      119301130     NM_006773      DDX18
3  chr2  118011467      119301130     NM_019044     CCDC93
4  chr8   23007913       23153672  NM_001136108     R3HCC1
5  chr8   23007913       23153672  NM_001317899      CHMP7
6  chr8   23007913       23153672     NM_003840  TNFRSF10D
7  chr8   23007913       23153672     NM_003844  TNFRSF10A
9  chr8   23007913       23153672     NR_033928  LOC389641,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr21   22989228       24155426     NR_038400     LINC00308
1   chr21   22989228       24155426     NR_038872     LINC00317
2   chr21   22989228       24155426     NR_109958     LINC01425
3   chr21   22989228       24155426     NR_109959  LOC101927843
4    chr4  189460015      190126215     NR_033869     LINC01060
5    chr6   97436020       99980295  NM_001080481         USP45
6    chr6   97436020       99980295  NM_001195131         TSTD3
7    chr6   97436020       99980295  NM_001278716         FBXL4
8    chr6   97436020       99980295  NM_001286251        KLHL32
9    chr6   97436020       99980295  NM_001322418         PNISR
17   chr6   97436020       99980295  NM_001346530          FAXC
19   chr6   97436020       99980295     NM_005604        POU3F2
20   chr6   97436020       99980295     NM_017421          COQ3
23   chr6   97436020       99980295     NM_198468        MMS22L
24   chr6   97436020       99980295     NR_031579       MIR2113
25   chr6   97436020       99980295     NR_031679      MIR548H3
26   chr6   97436020       99980295     NR_039672      MIR548AI
28   chr6   97436020       99980295     NR_110757  LOC101927314
29   chr6   97436020       99980295     NR_125843  LOC101927365
31   chr7    8709299        8840269     NM_152745         NXPH1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr13   41380616       41671763  NM_001145353      ELF1
1   chr13   41380616       41671763     NM_007187      WBP4
2   chr13   41380616       41671763     NM_014252  SLC25A15
4   chr13   41380616       41671763     NR_003365   SUGT1P3
5   chr13   41380616       41671763     NR_030352    MIR621
6   chr13   41380616       41671763     NR_038259   TPTE2P5
7   chr16   15444881       15577679  NM_001128423    MPV17L
8   chr16   15444881       15577679  NM_001277325    NPIPA5
9   chr16   15444881       15577679     NM_033201  C16orf45
10  chr16   18550880       18797543  NM_001004060     NOMO2
11  chr16   18550880       18797543     NM_001019    RPS15A
12  chr16   18550880       18797543     NR_003569   ABCC6P1
13   chr8    3950696        4112578     NM_033225     CSMD1,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr21   13496437       14480824     NR_026916  ANKRD30BP2
1   chr3  162849084      163112773     NR_033945   LINC01192
2   chr5   19577570       19712820  NM_001291956       CDH18
5   chr5  167284573      167391028  NM_001080428       TENM2
7   chr7   80052952       80198529  NM_001102386       GNAT3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   65423359       68339820     NM_000968          RPL4
1   chr15   65423359       68339820  NM_001031715          IQCH
2   chr15   65423359       68339820  NM_001143688         DIS3L
3   chr15   65423359       68339820  NM_001143936      C15orf61
4   chr15   65423359       68339820  NM_001144823       DENND4A
5   chr15   65423359       68339820  NM_001145102         SMAD3
8   chr15   65423359       68339820  NM_001206804        MAP2K5
9   chr15   65423359       68339820  NM_001206836        RAB11A
10  chr15   65423359       68339820  NM_001254740       SLC24A1
11  chr15   65423359       68339820  NM_001258024         SKOR1
12  chr15   65423359       68339820  NM_001271885         AAGAB
15  chr15   65423359       68339820  NM_001287821        ZWILCH
16  chr15   65423359       68339820  NM_001289986         TIPIN
21  chr15   65423359       68339820  NM_001329615        SNAPC5
22  chr15   65423359       68339820     NM_002755        MAP2K1
23  chr15   65423359       68339820     NM_003613          CILP
25  chr15   65423359       68339820     NM_004884        IGDCC3
26  chr15   65423359       68339820     NM_005585         SMAD6
27  chr15   65423359       68339820     NM_005707         PDCD7
30  chr15   65423359       68339820     NM_006660          CLPX
31  chr15   65423359       68339820     NM_016395         HACD3
32  chr15   65423359       68339820     NM_017851        PARP16
33  chr15   65423359       68339820     NM_020962        IGDCC4
35  chr15   65423359       68339820     NM_032445        MEGF11
37  chr15   65423359       68339820     NM_207338          LCTL
38  chr15   65423359       68339820     NR_002440       SNORD16
39  chr15   65423359       68339820     NR_002441      SNORD18A
40  chr15   65423359       68339820     NR_002442      SNORD18B
41  chr15   65423359       68339820     NR_002443      SNORD18C
42  chr15   65423359       68339820     NR_004388      SCARNA14
43  chr15   65423359       68339820     NR_036196       MIR4311
44  chr15   65423359       68339820     NR_039736       MIR4511
45  chr15   65423359       68339820     NR_039737       MIR4512
46  chr15   65423359       68339820     NR_040051      IQCH-AS1
50  chr15   65423359       68339820     NR_045104          VWA9
53  chr15   65423359       68339820     NR_110372     LINC01169
54  chr15   65423359       68339820     NR_120345  LOC101929076
55  chr15   65423359       68339820     NR_125730        RNU6-2
56  chr15   65423359       68339820     NR_135485          DPP8
58  chr15   65423359       68339820     NR_135686  LOC102723493
59  chr15   65423359       68339820     NR_135687  LOC102723481
60   chr7   80078223       80197452  NM_001102386         GNAT3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12     719519         828795  NM_001294345         NINJ2
3  chr12     719519         828795     NR_122124  LOC100049716
4   chr7   64160866       64291792  NM_001160183        ZNF138
5   chr7   64160866       64291792  NM_001282360        ZNF107
7   chr7  110660445      110792772  NM_001099658         LRRN3
8   chr7  110660445      110792772  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  153036597      153373687     NM_000427           LOR
1    chr1  153036597      153373687  NM_001010857         LELP1
2    chr1  153036597      153373687  NM_001014291        SPRR2G
3    chr1  153036597      153373687  NM_001014450        SPRR2F
4    chr1  153036597      153373687  NM_001017418        SPRR2B
5    chr1  153036597      153373687  NM_001024209        SPRR2E
6    chr1  153036597      153373687  NM_001195571          PRR9
7    chr1  153036597      153373687  NM_001319197        S100A8
10   chr1  153036597      153373687     NM_002965        S100A9
11   chr1  153036597      153373687     NM_005621       S100A12
12   chr1  153036597      153373687     NM_020393       PGLYRP4
13   chr1  153036597      153373687     NM_052891       PGLYRP3
14   chr1  153036597      153373687     NR_003062        SPRR2C
15   chr1  153036597      153373687     NR_110685  LOC101928009
16   chr1  245005450      245105648  NM_001312871         COX20
18   chr1  245005450      245105648     NM_004501        HNRNPU
20   chr1  245005450      245105648     NR_132782      SNORA100
21  chr10   81463640       81674561  NM_001278495        NUTM2B
22  chr10   81463640       81674561     NR_029407     LOC642361
23  chr10   81463640       81674561     NR_033857       BMS1P21
24  chr10   81463640       81674561     NR_120611    NUTM2B-AS1
27   chr2  110225423      110356614  NM_001099289        SH3RF3
28   chr2  110225423      110356614  NM_001321504        SEPT10,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr3   72709428       73041451  NM_001080393        GXYLT2
1  chr3   72709428       73041451     NM_018130          SHQ1
2  chr3   72709428       73041451     NR_135531  LOC105377162
3  chr9   28627113       29093049  NM_001258282        LINGO2
5  chr9   28627113       29093049     NR_030597        MIR876
6  chr9   28627113       29093049     NR_030618        MIR873,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   16455278       16598660  NM_001282511     NPIPA8
1  chr16   16455278       16598660     NR_106971  MIR6511A4
2   chr7  110561522      110706229  NM_001244606     IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1  219970515      220241710  NM_001286151      BPNT1
1  chr1  219970515      220241710     NM_004446       EPRS
2  chr1  219970515      220241710     NR_002753    RNU5F-1
3  chr1  219970515      220241710     NR_046437   SLC30A10
4  chr4   16191594       16314089     NM_153365      TAPT1
5  chr4   16191594       16314089     NR_027696  TAPT1-AS1
6  chr4   69159831       69303219  NM_001031732     YTHDC1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2  186466224      186759329     NM_173651         FSIP2
1    chr2  186466224      186759329     NR_110214  LOC101927196
4    chr2  186466224      186759329     NR_144453     FSIP2-AS1
6   chr21   22559599       24157607     NM_004540         NCAM2
7   chr21   22559599       24157607     NR_038400     LINC00308
8   chr21   22559599       24157607     NR_038872     LINC00317
9   chr21   22559599       24157607     NR_109958     LINC01425
10  chr21   22559599       24157607     NR_109959  LOC101927843
11   chr5   59780258       59896965  NM_001145208       DEPDC1B
12   chr5   59780258       59896965  NM_001165899         PDE4D
13   chr5   59780258       59896965     NR_024617         PART1
16   chr8  111879194      112410644     NR_125416     LINC01608
18   chr8  111879194      112410644     NR_125418     LINC01609,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr7    3313309        3433020  NM_152744      SDK1,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr10   81480259       81640790  NR_029407     LOC642361
1  chr10   81480259       81640790  NR_120611    NUTM2B-AS1
4  chr22   20555429       20657672  NR_136569     LOC729461
5  chr22   20555429       20657672  NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241475527      241643816  NM_001282773          RGS7
1    chr2  233080514      233185462  NM_001257281        DIS3L2
3   chr21   22396714       22890529     NM_004540         NCAM2
4   chr22   20652965       20981772  NM_001256523         ZNF74
5   chr22   20652965       20981772  NM_001293236         MED15
7   chr22   20652965       20981772     NM_153334        SCARF2
8   chr22   20652965       20981772     NR_033825        KLHL22
9   chr22   20652965       20981772     NR_136569     LOC729461
10  chr22   20652965       20981772     NR_136572  LOC101927859
11   chr7   64211949       64397873  NM_001160183        ZNF138
12   chr7   64211949       64397873     NM_021148        ZNF273,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  143537102      143678151     NR_106967   MIR6077
1  chr18     629915         749860  NM_001012716    TYMSOS
2  chr18     629915         749860     NM_001071      TYMS
3  chr18     629915         749860  NM_001126123    ENOSF1
4  chr18     629915         749860  NM_001289036     CLUL1
8  chr18     629915         749860     NM_005433      YES1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   72547987       72736204     NM_013381      TRHDE
1   chr12   72547987       72736204     NR_026836  TRHDE-AS1
3   chr14   26740019       26951077     NM_002515      NOVA1
5    chr7   21387959       21797062  NM_001277115     DNAH11
6    chr7   21387959       21797062  NM_001326542        SP4
7    chr7   21387959       21797062     NR_031594    MIR1183
9    chr7  110646778      110805256  NM_001099658      LRRN3
10   chr7  110646778      110805256  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   89051110       89328017  NM_001143837      NOX4
6   chr12   85444684       85983578  NM_001079910    LRRIQ1
7   chr12   85444684       85983578     NM_006982      ALX1
8   chr15   20718469       21024224  NM_001145004  GOLGA6L6
9   chr15   20718469       21024224     NR_027411  GOLGA8CP
10  chr15   20718469       21024224     NR_027992    NBEAP1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67186017       67546832     NM_000695   ALDH3B2
1   chr11   67186017       67546832     NM_000852     GSTP1
2   chr11   67186017       67546832  NM_001018070    CORO1B
4   chr11   67186017       67546832  NM_001078650   TMEM134
5   chr11   67186017       67546832  NM_001166102    NDUFV1
6   chr11   67186017       67546832  NM_001166222    CARNS1
7   chr11   67186017       67546832  NM_001243750     NUDT8
8   chr11   67186017       67546832  NM_001300895     CABP4
10  chr11   67186017       67546832  NM_001302959       AIP
11  chr11   67186017       67546832  NM_001318496     CABP2
12  chr11   67186017       67546832     NM_003952   RPS6KB2
14  chr11   67186017       67546832     NM_004910   PITPNM1
15  chr11   67186017       67546832     NM_005608   PTPRCAP
16  chr11   67186017       67546832     NM_005851   CDK2AP2
17  chr11   67186017       67546832     NM_005995     TBX10
19  chr11   67186017       67546832     NM_080658      ACY3
22  chr11   67186017       67546832     NM_206997    GPR152
23  chr11   67186017       67546832     NR_033791    DOC2GP
25  chr11   67186017       67546832     NR_106810   MIR6752
26  chr11   67186017       67546832     NR_130935  C11orf72
27   chr7  110513910      110661164  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   85419634       85887772  NM_001079910     LRRIQ1
1   chr12   85419634       85887772  NM_001100917    TSPAN19
2   chr12   85419634       85887772     NM_006982       ALX1
3    chr2   51086281       51398968  NM_001330079      NRXN1
6    chr2   51086281       51398968     NR_135237  LOC730100
7   chr22   32445456       32584808     NM_000343     SLC5A1
8   chr22   32445456       32584808  NM_001010859   C22orf42
10  chr22   32445456       32584808     NR_040114    AP1B1P1
11   chr9    4347977        4495694     NM_004170     SLC1A1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   12810885       13236765  NM_001009611    PRAMEF4
1   chr1   12810885       13236765  NM_001010889    PRAMEF6
2   chr1   12810885       13236765  NM_001010890    PRAMEF9
3   chr1   12810885       13236765  NM_001012276    PRAMEF8
4   chr1   12810885       13236765  NM_001013407    PRAMEF5
5   chr1   12810885       13236765  NM_001013631   HNRNPCL1
6   chr1   12810885       13236765  NM_001080830   PRAMEF12
7   chr1   12810885       13236765  NM_001099850   PRAMEF18
8   chr1   12810885       13236765  NM_001100631   PRAMEF22
9   chr1   12810885       13236765  NM_001136561   HNRNPCL2
10  chr1   12810885       13236765  NM_001146181   HNRNPCL3
11  chr1   12810885       13236765  NM_001146344   PRAMEF11
12  chr1   12810885       13236765  NM_001294139    PRAMEF1
13  chr1   12810885       13236765  NM_001302551   HNRNPCL4
14  chr1   12810885       13236765  NM_001306072   PRAMEF26
15  chr1   12810885       13236765  NM_001310134   PRAMEF25
17  chr1   12810885       13236765     NM_023014    PRAMEF2
18  chr1   12810885       13236765     NM_152290   C1orf158
19  chr1   12810885       13236765     NR_111945  PRAMEF36P
21  chr1   12775012       14183536  NM_001006624       PDPN
22  chr1   12775012       14183536  NM_001007257      PRDM2
23  chr1   12775012       14183536  NM_001009611    PRAMEF4
24  chr1   12775012       14183536  NM_001010847     LRRC38
25  chr1   12775012       14183536  NM_001010889    PRAMEF6
27  chr1   12775012       14183536  NM_001010890    PRAMEF9
28  chr1   12775012       14183536  NM_001012276    PRAMEF8
31  chr1   12775012       14183536  NM_001013407    PRAMEF5
33  chr1   12775012       14183536  NM_001013631   HNRNPCL1
34  chr1   12775012       14183536  NM_001024661   PRAMEF14
36  chr1   12775012       14183536  NM_001039361   PRAMEF10
38  chr1   12775012       14183536  NM_001080830   PRAMEF12
39  chr1   12775012       14183536  NM_001098376   PRAMEF15
41  chr1   12775012       14183536  NM_001099790   PRAMEF19
43  chr1   12775012       14183536  NM_001099850   PRAMEF18
45  chr1   12775012       14183536  NM_001099851   PRAMEF17
47  chr1   12775012       14183536  NM_001099852   PRAMEF20
49  chr1   12775012       14183536  NM_001100631   PRAMEF22
51  chr1   12775012       14183536  NM_001103170    AADACL3
53  chr1   12775012       14183536  NM_001136561   HNRNPCL2
54  chr1   12775012       14183536  NM_001146181   HNRNPCL3
55  chr1   12775012       14183536  NM_001146344   PRAMEF11
56  chr1   12775012       14183536  NM_001291381  PRAMEF33P
58  chr1   12775012       14183536  NM_001294139    PRAMEF1
59  chr1   12775012       14183536  NM_001300891   PRAMEF27
62  chr1   12775012       14183536  NM_001302551   HNRNPCL4
63  chr1   12775012       14183536  NM_001306072   PRAMEF26
64  chr1   12775012       14183536  NM_001310134   PRAMEF25
68  chr1   12775012       14183536     NM_023014    PRAMEF2
69  chr1   12775012       14183536     NM_152290   C1orf158
71  chr1   12775012       14183536     NR_111945  PRAMEF36P
73  chr4   69233722       69742384     NM_001075    UGT2B10
74  chr4   69233722       69742384     NM_001076    UGT2B15
75  chr4   69233722       69742384     NM_001077    UGT2B17
76  chr4   69233722       69742384     NM_014058  TMPRSS11E,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   18532444       18817577  NM_001004060     NOMO2
1  chr16   18532444       18817577     NM_001019    RPS15A
2  chr16   18532444       18817577  NM_001313858   ARL6IP1
3  chr16   18532444       18817577     NM_015092      SMG1
5  chr16   18532444       18817577     NR_003569   ABCC6P1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14698378       15004649     NM_080676      MACROD2
1  chr20   14698378       15004649     NR_037841  MACROD2-AS1
3   chr4  169252721      169499384  NM_001012967       DDX60L
4   chr4  169252721      169499384  NM_001166108        PALLD
6   chr7  133226107      133339559     NM_021807        EXOC4
7   chr8   16469988       16975689     NM_019851        FGF20
8   chr8   16469988       16975689     NM_181723        MICU3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr6   44999763       45113641  NM_001261823    SUPT3H
1  chr7   75810832       75915951  NM_001110199     SRRM3
2  chr7   82005018       82129003     NM_000722  CACNA2D1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20996692       21366916  NM_001277303        POTEB2
1   chr15   20996692       21366916     NM_207355        POTEB3
2   chr15   20996692       21366916     NR_028506         NF1P2
3   chr15   20996692       21366916     NR_036062     MIR3118-2
4   chr15   20996692       21366916     NR_040094     LINC01193
5   chr15   20996692       21366916     NR_049895     MIR5701-2
7   chr16   21491222       21635895  NM_001077180        METTL9
9   chr16   21491222       21635895     NR_002594      SLC7A5P2
10  chr16   21491222       21635895     NR_027155        SMG1P3
11  chr16   21491222       21635895     NR_049833     MIR3680-2
12  chr16   21491222       21635895     NR_110930  LOC101927814
13  chr21   35985399       36101197  NM_001285389         RCAN1
14  chr21   35985399       36101197  NM_001317009         CLIC6
17  chr21   35985399       36101197     NR_024351     LINC00160
18   chr4   71402917       71553553     NM_016519          AMBN
19   chr4   71402917       71553553     NM_031889          ENAM
20   chr4   71402917       71553553     NM_144646        JCHAIN,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr6  140445949      141839258  NR_037441   MIR3668
1  chr6  140445949      141839258  NR_039675   MIR4465
2  chr9   38978163       39099587  NM_033655   CNTNAP3,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr3  163724675      163982823  NR_031665       MIR1263
1  chr9   41917069       42056741  NR_003670        FGF7P3
2  chr9   41917069       42056741  NR_015363         GLIDR
5  chr9   41917069       42056741  NR_126048  LOC102724238
6  chr9   41917069       42056741  NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   27622939       27784536  NM_001034842        PTCHD3
1  chr10   27622939       27784536     NR_138082       ARMC4P1
2   chr2  186027871      186226680     NR_136319  LOC105373782
3   chr7  110463664      110566263  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   21539504       21937020  NM_001077180        METTL9
1  chr16   21539504       21937020  NM_001161683          OTOA
3  chr16   21539504       21937020  NM_001310148        NPIPB4
4  chr16   21539504       21937020     NM_005849         IGSF6
7  chr16   21539504       21937020     NR_003370        RRN3P1
8  chr16   21539504       21937020     NR_110930  LOC101927814
9   chr3  176604273      176893182  NM_001321193       TBL1XR1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr19   33132536       33360114  NM_001105570    NUDT19
1  chr19   33132536       33360114  NM_001110822    TDRD12
2  chr19   33132536       33360114     NM_014270    SLC7A9
3  chr19   33132536       33360114     NM_032139   ANKRD27
4  chr19   33132536       33360114     NM_207391    RGS9BP,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  181429824      181541503     NM_000721       CACNA1E
1  chr15   85745145       85914230  NM_001310153      GOLGA6L3
2  chr15   85745145       85914230     NR_049748     LOC642423
3  chr18   67110022       67215451     NM_152721          DOK6
4  chr18   67110022       67215451     NR_134579  LOC105372179
5   chr2   26637992       26908988  NM_001029881          CIB4
6   chr2   26637992       26908988  NM_001105519       C2orf70
7   chr2   26637992       26908988     NM_004802          OTOF
8   chr2   26637992       26908988     NM_145038          DRC1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   29491296       29601270     NR_135305        SMG1P2
2   chr19    1854193        3450983     NM_000479           AMH
3   chr19    1854193        3450983  NM_001031735        IZUMO4
4   chr19    1854193        3450983  NM_001101391        LINGO3
5   chr19    1854193        3450983  NM_001102651        ZNF554
6   chr19    1854193        3450983     NM_001130           AES
7   chr19    1854193        3450983  NM_001130111       ABHD17A
8   chr19    1854193        3450983  NM_001143986          TLE6
9   chr19    1854193        3450983  NM_001144761          TLE2
11  chr19    1854193        3450983  NM_001172673         CELF5
12  chr19    1854193        3450983  NM_001172775        ZNF555
13  chr19    1854193        3450983  NM_001245002          NFIC
15  chr19    1854193        3450983  NM_001300836       PLEKHJ1
16  chr19    1854193        3450983  NM_001300843        ZNF556
18  chr19    1854193        3450983  NM_001301020          OAZ1
19  chr19    1854193        3450983     NM_001319       CSNK1G2
20  chr19    1854193        3450983  NM_001319083         ZNF57
21  chr19    1854193        3450983  NM_001321463          NCLN
22  chr19    1854193        3450983  NM_001329539        SCAMP4
23  chr19    1854193        3450983     NM_002067         GNA11
24  chr19    1854193        3450983     NM_002068         GNA15
25  chr19    1854193        3450983     NM_003021          SGTA
26  chr19    1854193        3450983     NM_003249         THOP1
28  chr19    1854193        3450983     NM_003775         S1PR4
29  chr19    1854193        3450983     NM_003938         AP3D1
30  chr19    1854193        3450983     NM_007165         SF3A2
31  chr19    1854193        3450983     NM_012458        TIMM13
32  chr19    1854193        3450983     NM_015675       GADD45B
33  chr19    1854193        3450983     NM_016199          LSM7
34  chr19    1854193        3450983     NM_017572         MKNK2
..    ...        ...            ...           ...           ...
39  chr19    1854193        3450983     NM_031918         KLF16
40  chr19    1854193        3450983     NM_032482         DOT1L
41  chr19    1854193        3450983     NM_032737         LMNB2
42  chr19    1854193        3450983     NM_052847          GNG7
43  chr19    1854193        3450983     NM_130807         MOB3A
44  chr19    1854193        3450983     NM_138422         ADAT3
45  chr19    1854193        3450983     NM_144564       SLC39A3
46  chr19    1854193        3450983     NM_144616         JSRP1
47  chr19    1854193        3450983     NM_145173        DIRAS1
48  chr19    1854193        3450983     NM_152988        SPPL2B
50  chr19    1854193        3450983     NM_182973       TMPRSS9
51  chr19    1854193        3450983     NM_198532      C19orf35
54  chr19    1854193        3450983     NR_031596       MIR1227
56  chr19    1854193        3450983     NR_033400   CSNK1G2-AS1
57  chr19    1854193        3450983     NR_036207       MIR4321
58  chr19    1854193        3450983     NR_106847       MIR6789
59  chr19    1854193        3450983     NR_106958       MIR7108
60  chr19    1854193        3450983     NR_107004       MIR7850
61  chr19    1854193        3450983     NR_110670  LOC100996351
62  chr19    1854193        3450983     NR_134931  LOC101928602
64   chr2   26607092       26923018  NM_001029881          CIB4
65   chr2   26607092       26923018  NM_001105519       C2orf70
66   chr2   26607092       26923018     NM_002246         KCNK3
67   chr2   26607092       26923018     NM_004802          OTOF
68   chr2   26607092       26923018     NM_033505       SELENOI
69   chr2   26607092       26923018     NM_145038          DRC1
71   chr2  195593328      195703529     NR_110223  LOC101927431
72   chr4   97842655       98355999     NR_102713     STPG2-AS1
73   chr9    2484719        2634757     NM_003383         VLDLR
74   chr9    2484719        2634757     NR_015375     VLDLR-AS1

[62 rows x 5 columns], Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr19   47844114       48091071  NM_001009813        MEIS3
1   chr19   47844114       48091071  NM_001271749        C5AR2
3   chr19   47844114       48091071  NM_001277075       ZNF541
4   chr19   47844114       48091071  NM_001291296         KPTN
7   chr19   47844114       48091071     NM_014681        DHX34
8   chr19   47844114       48091071     NM_015063       SLC8A2
10  chr19   47844114       48091071     NR_038452     NAPA-AS1
11  chr19   47844114       48091071     NR_038457         NAPA
12  chr20   14518704       14644871     NM_080676      MACROD2
13  chr20   14518704       14644871     NR_104193  MACROD2-IT1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1   82221779       82323972  NM_001297704    ADGRL2
2  chr7    8654515        8845153     NM_152745     NXPH1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   27650107       27775715  NM_001034842     PTCHD3
1   chr4   69179470       69418690  NM_001031732     YTHDC1
2   chr4   69179470       69418690     NM_001077    UGT2B17
3   chr4   69179470       69418690     NM_014058  TMPRSS11E,    chrom  cnv_start  cnv_terminate    tx_name   gene_name
0  chr10   81505734       81681380  NR_002724       MBL1P
1  chr10   81505734       81681380  NR_029407   LOC642361
2  chr10   81505734       81681380  NR_033857     BMS1P21
3  chr10   81505734       81681380  NR_120611  NUTM2B-AS1
6   chr4   94152242       94264979  NM_001510       GRID2,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11   31386307       32675970     NM_000280           PAX6
1   chr11   31386307       32675970     NM_000378            WT1
2   chr11   31386307       32675970  NM_001008391         CCDC73
7   chr11   31386307       32675970  NM_001304274         IMMP1L
11  chr11   31386307       32675970     NM_002901           RCN1
12  chr11   31386307       32675970     NM_006360          EIF3M
13  chr11   31386307       32675970     NM_019040           ELP4
14  chr11   31386307       32675970     NM_181706        DNAJC24
15  chr11   31386307       32675970     NM_181807          DCDC1
16  chr11   31386307       32675970     NR_023920         WT1-AS
17  chr11   31386307       32675970     NR_033971  DKFZp686K1684
18  chr11   31386307       32675970     NR_117094         PAUPAR
19  chr11   31386307       32675970     NR_120526   LOC100506675
25  chr11   31386307       32675970     NR_132770        SNORA88
26  chr11   40301397       41092553  NM_001258419         LRRC4C
28  chr11   67171916       67295285  NM_001018070         CORO1B
29  chr11   67171916       67295285  NM_001078650        TMEM134
30  chr11   67171916       67295285  NM_001166222         CARNS1
31  chr11   67171916       67295285  NM_001256508       TBC1D10C
32  chr11   67171916       67295285  NM_001300895          CABP4
34  chr11   67171916       67295285  NM_001302959            AIP
35  chr11   67171916       67295285  NM_001318496          CABP2
36  chr11   67171916       67295285     NM_003952        RPS6KB2
38  chr11   67171916       67295285     NM_004910        PITPNM1
39  chr11   67171916       67295285     NM_005608        PTPRCAP
40  chr11   67171916       67295285     NM_005851        CDK2AP2
43  chr11   67171916       67295285     NM_206997         GPR152
46  chr11   67171916       67295285     NR_106810        MIR6752
47  chr14   45691085       45913298     NM_018353       MIS18BP1
48   chr6   20940994       21230870     NM_017774         CDKAL1
49   chr7  117514242      118498629     NM_016200           LSM8
50   chr7  117514242      118498629     NM_019644         ANKRD7,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143690006      143883459  NM_001123068       PPIAL4G
1  chr1  143690006      143883459     NR_104014     LINC01138
2  chr1  143690006      143883459     NR_111930  LOC100132057
3  chr1  245043242      245244340  NM_001143943        EFCAB2
6  chr1  245043242      245244340     NR_111907  LOC101928068,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67234889       67459807     NM_000695   ALDH3B2
1   chr11   67234889       67459807     NM_000852     GSTP1
3   chr11   67234889       67459807  NM_001078650   TMEM134
4   chr11   67234889       67459807  NM_001166102    NDUFV1
5   chr11   67234889       67459807  NM_001243750     NUDT8
6   chr11   67234889       67459807  NM_001302959       AIP
7   chr11   67234889       67459807  NM_001318496     CABP2
9   chr11   67234889       67459807     NM_004910   PITPNM1
10  chr11   67234889       67459807     NM_005851   CDK2AP2
11  chr11   67234889       67459807     NM_005995     TBX10
12  chr11   67234889       67459807     NM_080658      ACY3
14  chr11   67234889       67459807     NR_033791    DOC2GP
16  chr11   67234889       67459807     NR_106810   MIR6752
17  chr11   67234889       67459807     NR_130935  C11orf72
18  chr12   27209596       27313879  NM_001080406  C12orf71
19   chr3  192346094      192531945     NM_004113     FGF12
20   chr3  192346094      192531945     NM_178496    MB21D2
21   chr7    4078892        4302197  NM_001079653      SDK1
23   chr9  116351761      116663568  NM_001276260      RGS3
28   chr9  116351761      116663568  NM_001318041    ZNF618,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   75331620       75452761  NM_001243198      HIP1
1  chr7   75331620       75452761     NM_002991     CCL24
2  chr7   75331620       75452761     NM_006072     CCL26,     chrom  cnv_start  cnv_terminate    tx_name    gene_name
0   chr20   14804175       14929004  NM_080676      MACROD2
1   chr20   14804175       14929004  NR_037841  MACROD2-AS1
3    chr8    6546662        6798215  NM_001925        DEFA4
4    chr8    6546662        6798215  NM_001926        DEFA6
5    chr8    6546662        6798215  NM_005218        DEFB1
6    chr8    6546662        6798215  NM_018361       AGPAT5
7    chr8    6546662        6798215  NM_207411         XKR5
8    chr8    6546662        6798215  NR_039803     MIR4659A
9    chr8    6546662        6798215  NR_039807     MIR4659B
10   chr8    6546662        6798215  NR_045217   GS1-24F4.2
11   chr8    6546662        6798215  NR_125386    MCPH1-AS1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr5  106835971      107811337  NM_001163315        FBXL17
1  chr5  106835971      107811337     NM_001962         EFNA5
2  chr6  145810491      145972061     NM_005670         EPM2A
3  chr7    3758431        3861356     NM_152744          SDK1
4  chr7   64070129       64183709  NM_001282360        ZNF107
5  chr7   64070129       64183709     NR_077227  LOC100128885
7  chr7   64070129       64183709     NR_106898       MIR6839,   chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr1  215848681      216087367     NM_206933        USH2A
1  chr9   11990975       13309487     NM_000550        TYRP1
2  chr9   11990975       13309487  NM_001261407         MPDZ
4  chr9   11990975       13309487     NM_203403      LURAP1L
5  chr9   11990975       13309487     NR_125775  LURAP1L-AS1
6  chr9   11990975       13309487     NR_132976     SNORD137,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr3  155624929      155832395  NM_003875          GMPS
1  chr4  130507298      130688391  NR_110753  LOC101927282,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr19   57932935       58290289  NM_001023561    ZNF749
1   chr19   57932935       58290289  NM_001077426    ZNF586
2   chr19   57932935       58290289  NM_001098491    ZNF419
3   chr19   57932935       58290289  NM_001144068    ZNF772
4   chr19   57932935       58290289  NM_001199295    ZNF549
5   chr19   57932935       58290289  NM_001270938    ZNF551
6   chr19   57932935       58290289  NM_001277090    ZNF550
7   chr19   57932935       58290289  NM_001304334    ZNF773
9   chr19   57932935       58290289  NM_001321145      ZIK1
10  chr19   57932935       58290289  NM_001321375    ZNF671
11  chr19   57932935       58290289  NM_001321981    ZNF530
12  chr19   57932935       58290289  NM_001322306    ZNF211
13  chr19   57932935       58290289  NM_001330617     ZNF17
14  chr19   57932935       58290289     NM_003435    ZNF134
16  chr19   57932935       58290289     NM_017879    ZNF416
17  chr19   57932935       58290289     NM_020633     VN1R1
19  chr19   57932935       58290289     NM_152677    ZSCAN4
20  chr19   57932935       58290289     NM_173632    ZNF776
21  chr19   57932935       58290289     NR_110975    ZNF154,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr18   40213462       40362209     NM_002930       RIT2
1  chr18   40213462       40362209     NR_046174  LINC00907
2   chr5   31210139       31351441     NM_004932       CDH6
3   chr6  162873651      163021050     NM_013988      PARK2
4   chr7    6790222        6927246  NM_001099697   RSPH10B2
5   chr7    6790222        6927246     NM_198097      CCZ1B
6   chr7    6790222        6927246     NR_002217     PMS2CL,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7    4301935        4459889  NM_001079653      SDK1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   67305958       67525182     NM_000695     ALDH3B2
1   chr11   67305958       67525182     NM_000852       GSTP1
3   chr11   67305958       67525182  NM_001166102      NDUFV1
4   chr11   67305958       67525182  NM_001243750       NUDT8
5   chr11   67305958       67525182     NM_005995       TBX10
6   chr11   67305958       67525182     NM_080658        ACY3
8   chr11   67305958       67525182     NR_033791      DOC2GP
9   chr11   67305958       67525182     NR_130935    C11orf72
10   chr3  101072468      101415702     NM_000986       RPL24
11   chr3  101072468      101415702  NM_001282803       SENP7
13   chr3  101072468      101415702  NM_001320399        PCNP
14   chr3  101072468      101415702     NM_014415      ZBTB11
15   chr3  101072468      101415702     NM_017819     TRMT10C
16   chr3  101072468      101415702     NR_024407  ZBTB11-AS1
17   chr3  101072468      101415702     NR_036433    FAM172BP
18   chr3  156142173      156514647  NM_001184717      TIPARP
20   chr3  156142173      156514647  NM_001308197        SSR3
23   chr3  156142173      156514647  NM_001308217      KCNAB1
29   chr3  156142173      156514647     NR_027954  TIPARP-AS1
30   chr3  156142173      156514647     NR_038387   LINC00886
31   chr3  156142173      156514647     NR_046618  KCNAB1-AS1
32   chr3  162855970      163491399     NR_033945   LINC01192
33   chr9   41523928       41676801     NR_003528     ZNF658B,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143091560      143223985     NR_110761  LOC102723769
1  chr15  100184401      100364959  NM_001130928         MEF2A
2  chr15  100184401      100364959  NM_001284417        LYSMD4
5  chr15  100184401      100364959     NR_003260       DNM1P46
6  chr15  100184401      100364959     NR_135737     LOC400464
7   chr2  193621914      193763807     NR_002769        PCGEM1,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr3  156058142      156336267  NM_001308197        SSR3
3   chr3  156058142      156336267  NM_001308217      KCNAB1
8   chr3  156058142      156336267     NR_046618  KCNAB1-AS1
9   chr4   69187117       69319945  NM_001031732      YTHDC1
10  chr4   69187117       69319945     NM_014058   TMPRSS11E
11  chr4  189391383      189616301     NR_033869   LINC01060,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14624557       15487214  NM_001033087      MACROD2
2  chr20   14624557       15487214     NR_037841  MACROD2-AS1
4   chr9     234103         461288  NM_001190458        DOCK8,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27205672       28181038  NM_001029874         REP15
1   chr12   27205672       28181038  NM_001080406      C12orf71
2   chr12   27205672       28181038  NM_001145010         SMCO2
3   chr12   27205672       28181038  NM_001146221        MANSC4
4   chr12   27205672       28181038  NM_001190864        MRPS35
5   chr12   27205672       28181038  NM_001248002        ARNTL2
6   chr12   27205672       28181038     NM_002820         PTHLH
7   chr12   27205672       28181038     NM_015000        STK38L
8   chr12   27205672       28181038     NM_020782        KLHL42
9   chr12   27205672       28181038     NM_177444       PPFIBP1
13  chr12   27205672       28181038     NR_109975    ARNTL2-AS1
14  chr22   20092015       20215519  NM_001190326         DGCR8
15  chr22   20092015       20215519  NM_001243537       CCDC188
16  chr22   20092015       20215519  NM_001278639        RANBP1
19  chr22   20092015       20215519     NM_013373        ZDHHC8
20  chr22   20092015       20215519     NM_022727        TRMT2A
21  chr22   20092015       20215519     NR_026919     LINC00896
22  chr22   20092015       20215519     NR_038460     LOC284865
23  chr22   20092015       20215519     NR_106874       MIR6816
24   chr7   64094514       64222225  NM_001282360        ZNF107
26   chr7   64094514       64222225     NR_106898       MIR6839
27   chr7  110786662      110981960  NM_001244606        IMMP2L
29   chr7  146567315      146852448     NM_014141       CNTNAP2
30   chr7  146567315      146852448     NR_110829  LOC101928700,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12784328       12914761  NM_001013631   HNRNPCL1
1    chr1   12784328       12914761  NM_001080830   PRAMEF12
2    chr1   12784328       12914761  NM_001103170    AADACL3
3    chr1   12784328       12914761  NM_001146181   HNRNPCL3
4    chr1   12784328       12914761  NM_001146344   PRAMEF11
5    chr1   12784328       12914761  NM_001294139    PRAMEF1
6    chr1   12784328       12914761  NM_001302551   HNRNPCL4
8    chr1   12784328       12914761     NM_152290   C1orf158
9   chr22   20136360       20244453  NM_001243537    CCDC188
10  chr22   20136360       20244453     NM_023004      RTN4R
11  chr22   20136360       20244453     NR_026919  LINC00896
12  chr22   20136360       20244453     NR_031618    MIR1286
13  chr22   20136360       20244453     NR_038460  LOC284865,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72564809       73854472     NM_013381         TRHDE
1   chr12   72564809       73854472     NR_026836     TRHDE-AS1
3   chr12   72564809       73854472     NR_110130  LOC101928137
4   chr12   85630784       85872834  NM_001079910        LRRIQ1
5   chr12   85630784       85872834     NM_006982          ALX1
6   chr16   68627055       69375955  NM_001039690         CHTF8
8   chr16   68627055       69375955  NM_001199280          HAS3
9   chr16   68627055       69375955  NM_001199434          NIP7
10  chr16   68627055       69375955  NM_001317184          CDH1
11  chr16   68627055       69375955  NM_001317195          CDH3
13  chr16   68627055       69375955     NM_006750         SNTB2
14  chr16   68627055       69375955     NM_013245         VPS4A
15  chr16   68627055       69375955     NM_022341           PDF
16  chr16   68627055       69375955     NM_024562        TANGO6
17  chr16   68627055       69375955     NM_032382          COG8
18  chr16   68627055       69375955     NM_032830          UTP4
20  chr16   68627055       69375955     NR_106988     MIR7641-2
21   chr2   31437234       31537968  NM_001145122        CAPN14
23   chr2   31437234       31537968     NM_014600          EHD3
24  chr20   14726379       14961873     NM_080676       MACROD2
25  chr20   14726379       14961873     NR_037841   MACROD2-AS1
27   chr3   60335302       60598162  NM_001320899          FHIT
28   chr4   29811036       31434992  NM_001173523         PCDH7
31   chr4   29811036       31434992     NR_125935  LOC102723778
32   chr4   81856499       82123440     NM_001201          BMP3
33   chr4   81856499       82123440  NM_001206997       C4orf22
34   chr4   81856499       82123440  NM_001282483         PRKG2
36   chr4   81856499       82123440     NR_125908  LOC101928942
37   chr5   17629897       18386574     NR_134286     LOC646241
39   chr9  116793123      118168430     NM_000607          ORM1
40   chr9  116793123      118168430     NM_000608          ORM2
41   chr9  116793123      118168430  NM_001083885          WHRN
42   chr9  116793123      118168430  NM_001199233  LOC100505478
43   chr9  116793123      118168430  NM_001204344       TNFSF15
44   chr9  116793123      118168430     NM_001244        TNFSF8
46   chr9  116793123      118168430  NM_001317950          AKNA
48   chr9  116793123      118168430  NM_001318041        ZNF618
49   chr9  116793123      118168430  NM_001330760       TMEM268
50   chr9  116793123      118168430     NM_001633          AMBP
51   chr9  116793123      118168430     NM_002160           TNC
52   chr9  116793123      118168430     NM_004888      ATP6V1G1
55   chr9  116793123      118168430     NM_017418          DEC1
56   chr9  116793123      118168430     NM_032888       COL27A1
57   chr9  116793123      118168430     NM_138424         KIF12
59   chr9  116793123      118168430     NR_030255        MIR455
60   chr9  116793123      118168430     NR_110950  LOC101928748,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12770816       13037807  NM_001009611       PRAMEF4
1    chr1   12770816       13037807  NM_001010889       PRAMEF6
2    chr1   12770816       13037807  NM_001010890       PRAMEF9
3    chr1   12770816       13037807  NM_001012276       PRAMEF8
4    chr1   12770816       13037807  NM_001013631      HNRNPCL1
5    chr1   12770816       13037807  NM_001080830      PRAMEF12
6    chr1   12770816       13037807  NM_001099850      PRAMEF18
7    chr1   12770816       13037807  NM_001100631      PRAMEF22
8    chr1   12770816       13037807  NM_001103170       AADACL3
9    chr1   12770816       13037807  NM_001146181      HNRNPCL3
10   chr1   12770816       13037807  NM_001146344      PRAMEF11
11   chr1   12770816       13037807  NM_001294139       PRAMEF1
12   chr1   12770816       13037807  NM_001302551      HNRNPCL4
14   chr1   12770816       13037807     NM_023014       PRAMEF2
15   chr1   12770816       13037807     NM_152290      C1orf158
16   chr2   35530420       35824496     NR_039629      MIR548AD
17  chr20   40579593       40725958     NM_133170         PTPRT
18   chr6  162196889      162342082     NM_013988         PARK2
19   chr7    6894949        7223492     NM_020156       C1GALT1
20   chr7    6894949        7223492     NR_034022  LOC100131257
21   chr7    6894949        7223492     NR_037454       MIR3683
22   chr9   39087486       39232060     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   37392345       37511574     NM_052997      ANKRD30A
1  chr12    5089122        5272633     NM_002234         KCNA5
2  chr12   72528126       72665859     NR_026836     TRHDE-AS1
4  chr20    8539597        8993570     NM_015192         PLCB1
5   chr4   98311780       98489490     NM_174952         STPG2
6   chr4   98311780       98489490     NR_102713     STPG2-AS1
7   chr7   68676456       70101722  NM_001127231         AUTS2
9   chr7   68676456       70101722     NR_108105  LOC100507468,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   13047190       13149278  NM_001013407   PRAMEF5
1    chr1   13047190       13149278  NM_001306072  PRAMEF26
2    chr1   13047190       13149278  NM_001310134  PRAMEF25
3    chr1   86151784       86322438     NM_017953    ZNHIT6
4    chr1   86151784       86322438     NM_152890   COL24A1
5   chr11   30219605       30389151     NM_000510      FSHB
6   chr11   30219605       30389151     NM_152316   ARL14EP
7   chr11   67338102       67483306     NM_000695   ALDH3B2
8   chr11   67338102       67483306     NM_000852     GSTP1
10  chr11   67338102       67483306  NM_001166102    NDUFV1
11  chr11   67338102       67483306  NM_001243750     NUDT8
12  chr11   67338102       67483306     NM_005995     TBX10
13  chr11   67338102       67483306     NM_080658      ACY3
15  chr11   67338102       67483306     NR_033791    DOC2GP
16  chr11   67338102       67483306     NR_130935  C11orf72
17   chr6  162616462      163248936  NM_001080378     PACRG
19   chr6  162616462      163248936     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145336178      145471942  NM_001039888      ANKRD34A
1    chr1  145336178      145471942  NM_001277444         NBPF9
2    chr1  145336178      145471942  NM_001278267        NBPF20
3    chr1  145336178      145471942  NM_001302371        NBPF10
4    chr1  145336178      145471942  NM_001313972         TXNIP
6    chr1  145336178      145471942     NM_032305       POLR3GL
7    chr1  145336178      145471942     NM_145277          HFE2
8    chr1  145336178      145471942     NR_104217       NBPF25P
9    chr1  145336178      145471942     NR_125967  LOC101928979
10  chr13   31478127       31615362     NM_032849         MEDAG
11  chr13   31478127       31615362     NM_152325         TEX26
12  chr13   31478127       31615362     NR_038287     TEX26-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102389639      102536893     NR_110211         OLFM3
1   chr11   67221522       67368466     NM_000852         GSTP1
2   chr11   67221522       67368466  NM_001078650       TMEM134
3   chr11   67221522       67368466  NM_001300895         CABP4
5   chr11   67221522       67368466  NM_001302959           AIP
6   chr11   67221522       67368466  NM_001318496         CABP2
8   chr11   67221522       67368466     NM_004910       PITPNM1
9   chr11   67221522       67368466     NM_005851       CDK2AP2
12  chr11   67221522       67368466     NR_106810       MIR6752
13  chr15   82749253       83112882  NM_001164465     GOLGA6L10
14  chr15   82749253       83112882  NM_001291420      GOLGA6L9
17  chr15   82749253       83112882     NR_004847      UBE2Q2P2
18  chr15   82749253       83112882     NR_026811     GOLGA2P10
20  chr15   82749253       83112882     NR_045529     ADAMTS7P1
21  chr15   82749253       83112882     NR_102747     LOC727751
22  chr15   82749253       83112882     NR_111943         RPS17
24  chr15   82749253       83112882     NR_111962    GOLGA6L17P
25  chr15   82749253       83112882     NR_120378  LOC102724034
26   chr2  110117351      110320738  NM_001099289        SH3RF3
27   chr2  110117351      110320738  NM_001321504        SEPT10
29   chr7   77746022       77887942     NM_012301         MAGI2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   97206177       97564336  NM_001115016        KANSL3
1   chr2   97206177       97564336  NM_001122646       FAM178B
3   chr2   97206177       97564336  NM_001293083        FER1L5
4   chr2   97206177       97564336  NM_001319085        ARID5A
6   chr2   97206177       97564336  NM_001322354        LMAN2L
7   chr2   97206177       97564336     NM_016466       ANKRD39
9   chr2   97206177       97564336     NM_017623         CNNM3
10  chr2   97206177       97564336     NM_017789        SEMA4C
11  chr2   97206177       97564336     NM_020184         CNNM4
13  chr2   97206177       97564336     NM_144994       ANKRD23
14  chr2   97206177       97564336     NR_036074       MIR3127
16  chr3  176631216      176818955  NM_001321193       TBL1XR1
18  chr7   75750027       76185153  NM_001102594          DTX2
20  chr7   75750027       76185153  NM_001110199         SRRM3
21  chr7   75750027       76185153  NM_001110354           ZP3
22  chr7   75750027       76185153     NM_001540         HSPB1
24  chr7   75750027       76185153     NM_012479         YWHAG
25  chr7   75750027       76185153     NM_030570         UPK3B
26  chr7   75750027       76185153     NM_080744         SSC4D
27  chr7   75750027       76185153     NR_003262        FDPSP2
28  chr7   75750027       76185153     NR_029411  LOC100133091
29  chr9   41934055       42086572     NR_003670        FGF7P3
30  chr9   41934055       42086572     NR_015363         GLIDR
33  chr9   41934055       42086572     NR_126048  LOC102724238
34  chr9   41934055       42086572     NR_126049     LOC554249,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr5     111108         241831  NM_001080478       LRRC14B
1  chr5     111108         241831     NM_004168          SDHA
2  chr5     111108         241831     NM_052909      PLEKHG4B
3  chr5     111108         241831     NM_145265       CCDC127
4  chr7  110679444      110814854  NM_001099658         LRRN3
5  chr7  110679444      110814854  NM_001244606        IMMP2L
7  chr7  124952419      125180842     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   71495173       71834830  NM_001277227          LGR5
1   chr12   71495173       71834830     NM_004616        TSPAN8
2   chr13   23121973       25600109     NM_000231          SGCG
3   chr13   23121973       25600109  NM_001007537      C1QTNF9B
4   chr13   23121973       25600109  NM_001014442  C1QTNF9B-AS1
6   chr13   23121973       25600109  NM_001166271       SPATA13
7   chr13   23121973       25600109  NM_001184993         RNF17
8   chr13   23121973       25600109  NM_001185085        ATP12A
9   chr13   23121973       25600109  NM_001204458      TNFRSF19
10  chr13   23121973       25600109  NM_001278055          SACS
13  chr13   23121973       25600109  NM_001303137       C1QTNF9
15  chr13   23121973       25600109     NM_005932         MIPEP
16  chr13   23121973       25600109     NM_006437         PARP4
20  chr13   23121973       25600109     NR_002815       TPTE2P6
21  chr13   23121973       25600109     NR_026730       TPTE2P1
22  chr13   23121973       25600109     NR_031753       MIR2276
23  chr13   23121973       25600109     NR_033774       BASP1P1
24  chr13   23121973       25600109     NR_038995     LINC00327
25  chr13   23121973       25600109     NR_046531   SPATA13-AS1
26  chr13   23121973       25600109     NR_047594         CENPJ
27  chr13   23121973       25600109     NR_073430   ANKRD20A19P
28  chr13   23121973       25600109     NR_103450      SACS-AS1
31  chr13   23121973       25600109     NR_131903     LINC00566
32  chr13   23121973       25600109     NR_138043     LINC00621
33   chr2  107683063      107834448     NR_049853      MIR548AU
34   chr2  133816432      135154221     NM_002410         MGAT5
35   chr2  133816432      135154221     NM_207363        NCKAP5
36   chr2  133816432      135154221     NR_037450       MIR3679
37   chr2  133816432      135154221     NR_110294  LOC101928161
38  chr22   20078655       20842245  NM_001190326         DGCR8
39  chr22   20078655       20842245  NM_001242313      TMEM191B
40  chr22   20078655       20842245  NM_001243537       CCDC188
41  chr22   20078655       20842245  NM_001256523         ZNF74
42  chr22   20078655       20842245  NM_001278639        RANBP1
45  chr22   20078655       20842245     NM_013373        ZDHHC8
46  chr22   20078655       20842245     NM_015672        RIMBP3
47  chr22   20078655       20842245     NM_022727        TRMT2A
48  chr22   20078655       20842245     NM_023004         RTN4R
49  chr22   20078655       20842245     NM_033257        DGCR6L
50  chr22   20078655       20842245     NM_153334        SCARF2
51  chr22   20078655       20842245     NR_003563       PI4KAP1
52  chr22   20078655       20842245     NR_026919     LINC00896
53  chr22   20078655       20842245     NR_031618       MIR1286
54  chr22   20078655       20842245     NR_033825        KLHL22
55  chr22   20078655       20842245     NR_038460     LOC284865
56  chr22   20078655       20842245     NR_106874       MIR6816
57  chr22   20078655       20842245     NR_136560       FAM230A
58  chr22   20078655       20842245     NR_136569     LOC729461
59  chr22   20078655       20842245     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   48449495       48598230  NM_001005512      OR4A47
1   chr13   80859334       80976027  NM_001318536       SPRY2
4   chr14   47770092       48179195  NM_001113498       MDGA2
7   chr17   21321764       21564553  NM_001113434    C17orf51
8   chr17   21321764       21564553     NM_021012      KCNJ12
9    chr2   35685668       35804294     NR_039629    MIR548AD
10   chr2   52196285       52314728     NR_135237   LOC730100
11   chr2   75914308       76016121  NM_001201334       GCFC2
14   chr5  119923307      120267914  NM_001300783       PRR16
17   chr8    7171006        7314613  NM_001081551    DEFB103A
18   chr8    7171006        7314613  NM_001164457     ZNF705G
19   chr8    7171006        7314613  NM_001205266      DEFB4B
20   chr8    7171006        7314613  NM_001256873     USP17L1
21   chr8    7171006        7314613  NM_001256874     USP17L4
22   chr8    7171006        7314613     NM_058200     SPAG11B
25   chr8    7171006        7314613     NR_003668  DEFB109P1B
26   chr8    7171006        7314613     NR_027423      FAM66B
27   chr9    2467422        2868556     NM_003383       VLDLR
28   chr9    2467422        2868556     NM_014878        PUM3
29   chr9    2467422        2868556     NM_133497       KCNV2
30   chr9    2467422        2868556     NR_015375   VLDLR-AS1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3  193079717      193218596     NM_032279   ATP13A4
1  chr3  193079717      193218596     NM_198505   ATP13A5
2  chr7  133232829      133345383     NM_021807     EXOC4
3  chr8  110247734      110406434  NM_001128211    NUDCD1
4  chr8  110247734      110406434  NM_001193557      ENY2
6  chr8  110247734      110406434     NM_177531   PKHD1L1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   12275341       12385204     NM_032167     SNX29
1   chr3   85442012       85799366  NM_001167675     CADM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   95901218       96437210  NM_001261833          JRKL
1   chr11   95901218       96437210  NM_001318737        CCDC82
3   chr11   95901218       96437210     NM_032427         MAML2
4   chr11   95901218       96437210     NR_036125      MIR1260B
5   chr11   95901218       96437210     NR_047481      JRKL-AS1
6   chr11   95901218       96437210     NR_135097  LOC105369443
7   chr15   21008317       21250444  NM_001277303        POTEB2
8   chr15   21008317       21250444     NM_207355        POTEB3
9   chr15   21008317       21250444     NR_028506         NF1P2
10  chr15   21008317       21250444     NR_036062     MIR3118-2
11  chr15   21008317       21250444     NR_040094     LINC01193
12  chr15   21008317       21250444     NR_049895     MIR5701-2
14   chr4  169254354      169443151  NM_001012967        DDX60L
15   chr4  169254354      169443151  NM_001166108         PALLD,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   91859635       92319417  NM_001017975          HFM1
1   chr1   91859635       92319417  NM_001134419          CDC7
3   chr1   91859635       92319417  NM_001195683        TGFBR3
5   chr2   78150493       78396379     NR_024342        SNAR-H
6   chr2   78150493       78396379     NR_110287  LOC101927948
7   chr2   78150493       78396379     NR_110288  LOC101927967
8   chr7   64024252       64521289  NM_001007253        ERV3-1
9   chr7   64024252       64521289  NM_001160183        ZNF138
10  chr7   64024252       64521289  NM_001282360        ZNF107
11  chr7   64024252       64521289     NM_015852        ZNF117
12  chr7   64024252       64521289     NM_021148        ZNF273
13  chr7   64024252       64521289     NR_033245     LOC641746
14  chr7   64024252       64521289     NR_033416        CCT6P3
16  chr7   64024252       64521289     NR_077227  LOC100128885
18  chr7   64024252       64521289     NR_106898       MIR6839
19  chr9   39080336       39190201     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  165162798      165324395  NM_001174069         LMX1A
2    chr1  186055726      187648356     NM_000963         PTGS2
3    chr1  186055726      187648356  NM_001164245       C1orf27
4    chr1  186055726      187648356  NM_001303232          PRG4
5    chr1  186055726      187648356  NM_001311193       PLA2G4A
6    chr1  186055726      187648356     NM_002597           PDC
7    chr1  186055726      187648356     NM_003292           TPR
8    chr1  186055726      187648356     NM_022375          OCLM
10   chr1  186055726      187648356     NM_031935         HMCN1
11   chr1  186055726      187648356     NR_125801        PACERR
12   chr1  186055726      187648356     NR_126002  LOC102724919
13   chr1  186055726      187648356     NR_126347     LINC01036
14   chr1  186055726      187648356     NR_132374     LINC01037
15  chr21   22335116       22481927     NM_004540         NCAM2
16   chr7   64165938       64267270  NM_001160183        ZNF138
17   chr7   64165938       64267270  NM_001282360        ZNF107,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21400061       21536056     NM_130464        NPIPB3
1   chr16   21400061       21536056     NR_002594      SLC7A5P2
2   chr16   21400061       21536056     NR_024456  LOC100190986
3   chr16   21400061       21536056     NR_027155        SMG1P3
4   chr16   21400061       21536056     NR_049833     MIR3680-2
5   chr16   68558644       68676418  NM_001305204         ZFP90
7    chr8    5464689        6648504     NM_001147        ANGPT2
8    chr8    5464689        6648504  NM_001172574         MCPH1
11   chr8    5464689        6648504     NM_018361        AGPAT5
12   chr8    5464689        6648504     NR_039803      MIR4659A
13   chr8    5464689        6648504     NR_039807      MIR4659B
14   chr8    5464689        6648504     NR_040040  LOC100287015
15   chr8    5464689        6648504     NR_107022       MIR8055
16   chr8    5464689        6648504     NR_125386     MCPH1-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   67255801       67435943     NM_000695    ALDH3B2
1   chr11   67255801       67435943     NM_000852      GSTP1
3   chr11   67255801       67435943  NM_001166102     NDUFV1
4   chr11   67255801       67435943  NM_001243750      NUDT8
5   chr11   67255801       67435943  NM_001302959        AIP
6   chr11   67255801       67435943  NM_001318496      CABP2
8   chr11   67255801       67435943     NM_004910    PITPNM1
9   chr11   67255801       67435943     NM_005851    CDK2AP2
10  chr11   67255801       67435943     NM_005995      TBX10
11  chr11   67255801       67435943     NM_080658       ACY3
13  chr11   67255801       67435943     NR_033791     DOC2GP
15  chr11   67255801       67435943     NR_106810    MIR6752
16  chr11   67255801       67435943     NR_130935   C11orf72
17  chr15   20664021       20813216  NM_001145004   GOLGA6L6
18  chr15   20664021       20813216     NR_027411   GOLGA8CP
19  chr15   20664021       20813216     NR_036432    HERC2P3
20   chr2   52898508       53000123     NR_039630    MIR4431
21   chr7   16540904       16668636  NM_001195280     LRRC72
22   chr7   16540904       16668636     NM_020319     ANKMY2
23   chr9   38996265       39193573     NM_033655    CNTNAP3
24   chr9   41443666       41574371  NM_001113541  SPATA31A5
25   chr9   41443666       41574371     NM_015667  SPATA31A7
26   chr9   41443666       41574371     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr17      60473         388640  NM_001013672      C17orf97
1  chr17      60473         388640  NM_001190411        RPH3AL
2  chr17      60473         388640     NM_182705         RFLNB
3  chr17      60473         388640     NR_040011  LOC100506388
4  chr17      60473         388640     NR_136407  LOC105371430
5   chr3   60066781       60403677  NM_001320899          FHIT,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  104188270      104611112  NM_001008218         AMY1B
3   chr1  104188270      104611112  NM_001008219         AMY1C
6   chr1  104188270      104611112  NM_001008221         AMY1A
12  chr3   26022212       29462147  NM_001003792         RBMS3
13  chr3   26022212       29462147  NM_001134432          AZI2
14  chr3   26022212       29462147  NM_001258380        SLC4A7
16  chr3   26022212       29462147  NM_001304384         NEK10
17  chr3   26022212       29462147  NM_001317808        LRRC3B
22  chr3   26022212       29462147  NM_001324169        ZCWPW2
23  chr3   26022212       29462147     NM_005442         EOMES
27  chr3   26022212       29462147     NM_182523          CMC1
29  chr3   26022212       29462147     NR_038840     LINC00693
30  chr3   26022212       29462147     NR_109804     RBMS3-AS3
31  chr3   26022212       29462147     NR_132438  LOC100996624,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15  100157762      100296631  NM_001130928         MEF2A
1   chr15  100157762      100296631  NM_001284417        LYSMD4
4   chr16    6684126        6795788  NM_001308117        RBFOX1
6   chr16   68746227       68858240  NM_001317184          CDH1
7   chr16   68746227       68858240     NR_106988     MIR7641-2
8    chr2  216270203      217061359  NM_001142310       TMEM169
9    chr2  216270203      217061359  NM_001306129           FN1
11   chr2  216270203      217061359     NM_018000          MREG
12   chr2  216270203      217061359     NM_018441          PECR
13   chr2  216270203      217061359     NM_021141         XRCC5
15   chr2  216270203      217061359     NR_037195     LINC00607
16   chr2  216270203      217061359     NR_110607  LOC102724849
17   chr2  216270203      217061359     NR_132383     LINC01614
18   chr6    1833332        1948927  NM_001253846          GMDS
20   chr8     480418         828188  NM_001256113          TDRP
21   chr8     480418         828188  NM_001303100        ERICH1
22   chr8     480418         828188  NM_001346810        DLGAP2
25   chr8     480418         828188     NR_073397    ERICH1-AS1
26   chr8     480418         828188     NR_134292     LOC401442
27   chr9   39060919       39175928     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr17   21371478       21504378  NM_001113434  C17orf51
1  chr17   21416045       22862829  NM_001113434  C17orf51
2  chr17   21416045       22862829  NM_001190452  MTRNR2L1
3  chr17   21416045       22862829     NR_027084  FLJ36000
4  chr17   21416045       22862829     NR_028336   FAM27E5
5  chr19     868859         980060     NM_005224    ARID3A
6  chr19     868859         980060     NM_005481     MED16
7  chr19     868859         980060     NM_032551    KISS1R
8  chr19     868859         980060     NM_138774    R3HDM4
9  chr19     868859         980060     NR_125730    RNU6-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   41700703       41839582  NM_001164595        PDZRN4
2   chr12  128568165      129234606  NM_001136103      TMEM132C
3   chr12  128568165      129234606     NR_037406       MIR3612
4   chr12  128568165      129234606     NR_039720      MIR4419B
5   chr12  128568165      129234606     NR_104647  LOC100996679
6   chr12  128568165      129234606     NR_104648  LOC101927694
7   chr17   47807430       48216533  NM_001077503          TAC4
8   chr17   47807430       48216533  NM_001199158          KAT7
9   chr17   47807430       48216533  NM_001199898          PDK2
12  chr17   47807430       48216533  NM_001242791      FLJ45513
13  chr17   47807430       48216533  NM_001257359        SAMD14
14  chr17   47807430       48216533     NM_001934          DLX4
15  chr17   47807430       48216533     NM_002204         ITGA3
17  chr17   47807430       48216533     NM_005220          DLX3
18  chr17   47807430       48216533     NM_030802       FAM117A
19  chr17   47807430       48216533     NM_032595       PPP1R9B
21  chr17   47807430       48216533     NR_038230     LOC284080
22   chr2     904910        1007137     NM_018968         SNTG2
23   chr2     904910        1007137     NR_136151  LOC101060391
24  chr22   20144678       20255520     NM_023004         RTN4R
25  chr22   20144678       20255520     NR_026919     LINC00896
26  chr22   20144678       20255520     NR_031618       MIR1286
27  chr22   20144678       20255520     NR_038460     LOC284865,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   23384824       23534708     NR_107021   MIR8054
1   chr11   67276693       67397087     NM_000852     GSTP1
2   chr11   67276693       67397087  NM_001166102    NDUFV1
3   chr11   67276693       67397087  NM_001243750     NUDT8
4   chr11   67276693       67397087  NM_001318496     CABP2
6   chr11   67276693       67397087     NR_033791    DOC2GP
7   chr11   67276693       67397087     NR_130935  C11orf72
8   chr12    5142531        5311629     NM_002234     KCNA5
9   chr17   21282287       21570242  NM_001113434  C17orf51
10  chr17   21282287       21570242  NM_001194958    KCNJ18
11  chr17   21282287       21570242     NM_021012    KCNJ12
12   chr4  121665636      122176186  NM_001128843     TNIP3
14   chr4  121665636      122176186     NM_018699     PRDM5
15   chr4  121665636      122176186     NM_024574      NDNF,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12793123       12919219  NM_001013631      HNRNPCL1
1    chr1   12793123       12919219  NM_001080830      PRAMEF12
2    chr1   12793123       12919219  NM_001146181      HNRNPCL3
3    chr1   12793123       12919219  NM_001146344      PRAMEF11
4    chr1   12793123       12919219  NM_001294139       PRAMEF1
5    chr1   12793123       12919219  NM_001302551      HNRNPCL4
7    chr1   12793123       12919219     NM_023014       PRAMEF2
8    chr1   12793123       12919219     NM_152290      C1orf158
9   chr16   71101857       71319076  NM_001099642         CMTR2
10  chr16   71101857       71319076  NM_001198542         HYDIN
18  chr18   24794159       25054451     NR_134589  LOC105372038
19  chr19   21620418       21742024  NM_001001415        ZNF429
20  chr19   21620418       21742024     NR_037194     LINC00664
21   chr4      86973         267531  NM_001039127        ZNF718
22   chr4      86973         267531  NM_001137608        ZNF732
23   chr4      86973         267531  NM_001286052        ZNF595
26   chr4      86973         267531     NR_027481       ZNF876P
29   chr8   58058964       58337603     NR_026772     LINC00588
30   chr8   58058964       58337603     NR_038235     LINC01606
31   chr8   58058964       58337603     NR_038874     LOC286177
32   chr8   58058964       58337603     NR_125818  LOC101929488
33   chr9   80063629       80216566     NM_004297         GNA14
34   chr9   80063629       80216566     NR_121184     GNA14-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12766900       13021375  NM_001009611       PRAMEF4
1    chr1   12766900       13021375  NM_001010889       PRAMEF6
2    chr1   12766900       13021375  NM_001010890       PRAMEF9
3    chr1   12766900       13021375  NM_001012276       PRAMEF8
4    chr1   12766900       13021375  NM_001013631      HNRNPCL1
5    chr1   12766900       13021375  NM_001080830      PRAMEF12
6    chr1   12766900       13021375  NM_001103170       AADACL3
7    chr1   12766900       13021375  NM_001146181      HNRNPCL3
8    chr1   12766900       13021375  NM_001146344      PRAMEF11
9    chr1   12766900       13021375  NM_001294139       PRAMEF1
10   chr1   12766900       13021375  NM_001302551      HNRNPCL4
12   chr1   12766900       13021375     NM_023014       PRAMEF2
13   chr1   12766900       13021375     NM_152290      C1orf158
14   chr1  241517286      241658107  NM_001282773          RGS7
15  chr12   19626530       20070824  NM_001267043         AEBP2
17  chr16   16323367       16429822  NM_001004067         NOMO3
18  chr16   16323367       16429822     NR_036140     MIR3179-1
19  chr16   16323367       16429822     NR_036141     MIR3180-1
20  chr16   16323367       16429822     NR_036142     MIR3180-2
21  chr16   16323367       16429822     NR_036447        PKD1P1
22  chr16   16323367       16429822     NR_103772  LOC100288162
23  chr16   16323367       16429822     NR_106766     MIR6511A1
24  chr16   16323367       16429822     NR_107060     MIR6770-2
25  chr16   16323367       16429822     NR_128713     MIR3670-4
26  chr18   19195048       19369059  NM_001291916        SNRPD1
27  chr18   19195048       19369059  NM_001308256         ABHD3
29  chr18   19195048       19369059     NM_020774          MIB1
30  chr18   19195048       19369059     NR_031565      MIR320C1
31  chr20   41015075       41225722     NM_133170         PTPRT
32   chr3     621958         933162     NR_110118     LINC01266
33   chr7   75742041       75871832  NM_001110199         SRRM3
34   chr7  110600862      110797129  NM_001099658         LRRN3
35   chr7  110600862      110797129  NM_001244606        IMMP2L
37   chr8    7179476        7465644  NM_001040705      DEFB107B
38   chr8    7179476        7465644  NM_001081551      DEFB103A
39   chr8    7179476        7465644  NM_001164457       ZNF705G
40   chr8    7179476        7465644  NM_001205266        DEFB4B
41   chr8    7179476        7465644  NM_001256873       USP17L1
42   chr8    7179476        7465644  NM_001256874       USP17L4
43   chr8    7179476        7465644  NM_001282478       PRR23D2
44   chr8    7179476        7465644  NM_001282479       PRR23D1
45   chr8    7179476        7465644     NM_058200       SPAG11B
49   chr8    7179476        7465644     NM_080389      DEFB104A
50   chr8    7179476        7465644     NM_152250      DEFB105A
51   chr8    7179476        7465644     NM_152251      DEFB106A
52   chr8    7179476        7465644     NR_027423        FAM66B
53   chr8    7179476        7465644     NR_046343      FAM90A7P,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   80773741       81117241  NM_001318536      SPRY2
3   chr15  100127990      100240345  NM_001130928      MEF2A
5   chr19   21696060       22003931  NM_001001415     ZNF429
6   chr19   21696060       22003931  NM_001256650      ZNF43
8   chr19   21696060       22003931     NM_173531     ZNF100
9   chr19   21696060       22003931     NR_024523  LOC641367
10  chr20    8069705        8177406     NM_015192      PLCB1
11   chr3    4152663        4578543  NM_001164675      SUMF1
12   chr3    4152663        4578543  NM_001168272      ITPR1
13   chr3    4152663        4578543  NM_001243723     SETMAR
15   chr3    4152663        4578543     NR_108075  ITPR1-AS1
16   chr4  128357245      128566149     NM_015693       INTU,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   48257915       48401383  NM_001004702       OR4C3
1   chr11   48257915       48401383  NM_001004725       OR4S1
2   chr11   48257915       48401383  NM_001004726       OR4X1
3   chr11   48257915       48401383  NM_001004727       OR4X2
4   chr11   48257915       48401383  NM_001005513      OR4C45
5    chr2   96001913       97179334     NM_000682      ADRA2B
6    chr2   96001913       97179334  NM_001002036        ASTL
7    chr2   96001913       97179334  NM_001008949    ITPRIPL1
8    chr2   96001913       97179334  NM_001034914      KCNIP3
11   chr2   96001913       97179334  NM_001164464     TRIM43B
12   chr2   96001913       97179334  NM_001193304     TMEM127
13   chr2   96001913       97179334  NM_001285485      NEURL3
14   chr2   96001913       97179334  NM_001310154    ANKRD36C
15   chr2   96001913       97179334  NM_001321530       GPAT2
17   chr2   96001913       97179334     NM_004418       DUSP2
18   chr2   96001913       97179334     NM_004804       CIAO1
20   chr2   96001913       97179334     NM_014014    SNRNP200
21   chr2   96001913       97179334     NM_015341       NCAPH
22   chr2   96001913       97179334     NM_016044      FAHD2A
23   chr2   96001913       97179334     NM_020151      STARD7
24   chr2   96001913       97179334     NM_138800      TRIM43
26   chr2   96001913       97179334     NR_003698     FAHD2CP
27   chr2   96001913       97179334     NR_046322  STARD7-AS1
28   chr2   96001913       97179334     NR_103734   LINC00342
30   chr2  110174504      110282680  NM_001099289      SH3RF3
31   chr8   58041373       58170943     NR_038235   LINC01606,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12785742       13669950  NM_001009611    PRAMEF4
1    chr1   12785742       13669950  NM_001010889    PRAMEF6
3    chr1   12785742       13669950  NM_001010890    PRAMEF9
4    chr1   12785742       13669950  NM_001012276    PRAMEF8
7    chr1   12785742       13669950  NM_001013407    PRAMEF5
9    chr1   12785742       13669950  NM_001013631   HNRNPCL1
10   chr1   12785742       13669950  NM_001024661   PRAMEF14
12   chr1   12785742       13669950  NM_001039361   PRAMEF10
14   chr1   12785742       13669950  NM_001080830   PRAMEF12
15   chr1   12785742       13669950  NM_001098376   PRAMEF15
17   chr1   12785742       13669950  NM_001099790   PRAMEF19
18   chr1   12785742       13669950  NM_001099850   PRAMEF18
20   chr1   12785742       13669950  NM_001099851   PRAMEF17
21   chr1   12785742       13669950  NM_001099852   PRAMEF20
22   chr1   12785742       13669950  NM_001100631   PRAMEF22
24   chr1   12785742       13669950  NM_001103170    AADACL3
25   chr1   12785742       13669950  NM_001136561   HNRNPCL2
26   chr1   12785742       13669950  NM_001146181   HNRNPCL3
27   chr1   12785742       13669950  NM_001146344   PRAMEF11
28   chr1   12785742       13669950  NM_001291381  PRAMEF33P
30   chr1   12785742       13669950  NM_001294139    PRAMEF1
31   chr1   12785742       13669950  NM_001300891   PRAMEF27
34   chr1   12785742       13669950  NM_001302551   HNRNPCL4
35   chr1   12785742       13669950  NM_001306072   PRAMEF26
36   chr1   12785742       13669950  NM_001310134   PRAMEF25
38   chr1   12785742       13669950     NM_023014    PRAMEF2
39   chr1   12785742       13669950     NM_152290   C1orf158
40   chr1   12785742       13669950     NR_111945  PRAMEF36P
42  chr12  130205081      130466326     NM_133448   TMEM132D
43  chr18   63833142       64343692     NM_021153      CDH19
44   chr5  120010606      120193664  NM_001300783      PRR16
47   chr7  110640243      110791628  NM_001099658      LRRN3
48   chr7  110640243      110791628  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142658855      142805334     NR_046228   ANKRD20A12P
1   chr10   27614851       27758458  NM_001034842        PTCHD3
2   chr10   27614851       27758458     NR_138082       ARMC4P1
3    chr2   97490182       97635405  NM_001122646       FAM178B
5    chr2   97490182       97635405     NM_016466       ANKRD39
7    chr2   97490182       97635405     NM_017623         CNNM3
8    chr2   97490182       97635405     NM_017789        SEMA4C
9    chr2   97490182       97635405     NM_144994       ANKRD23
10   chr2   97490182       97635405     NR_110209  LOC101927053,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1   87369588       87521520  NM_001134492     HS2ST1
1  chr1   87369588       87521520     NM_004261    SELENOF
3  chr4  182066264      182269069     NR_033918  LINC00290,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr13   19714696       19822545     NM_006001        TUBA3C
1  chr13   19714696       19822545     NR_126054  LOC101928697
2  chr16   76367271       76505096  NM_001322181       CNTNAP4
4   chr3    1310982        1448407  NM_001289081         CNTN6
5   chr7  110663145      110768987  NM_001099658         LRRN3
6   chr7  110663145      110768987  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   20963624       21180388  NM_001277303     POTEB2
1   chr15   20963624       21180388     NM_207355     POTEB3
2   chr15   20963624       21180388     NR_028506      NF1P2
3   chr15   20963624       21180388     NR_036062  MIR3118-2
4   chr15   20963624       21180388     NR_040094  LINC01193
5   chr15   20963624       21180388     NR_049895  MIR5701-2
7   chr15   20931156       21357163  NM_001277303     POTEB2
8   chr15   20931156       21357163     NM_207355     POTEB3
9   chr15   20931156       21357163     NR_027992     NBEAP1
10  chr15   20931156       21357163     NR_028506      NF1P2
11  chr15   20931156       21357163     NR_036062  MIR3118-2
12  chr15   20931156       21357163     NR_040094  LINC01193
13  chr15   20931156       21357163     NR_049895  MIR5701-2
15   chr4   56363111       56475523  NM_001267843      CLOCK
17   chr4   56363111       56475523     NM_006681        NMU
18   chr4   56363111       56475523     NM_152401      PDCL2
20   chr4   93951928       94129918     NM_001510      GRID2
21   chr7   71434905       71938527  NM_001017440      CALN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   21000617       22448393  NM_001004719         OR4M2
1   chr15   21000617       22448393  NM_001005241         OR4N4
2   chr15   21000617       22448393  NM_001277303        POTEB2
3   chr15   21000617       22448393  NM_001277304         POTEB
4   chr15   21000617       22448393     NM_207355        POTEB3
6   chr15   21000617       22448393     NR_015416     LOC727924
7   chr15   21000617       22448393     NR_024387       CXADRP2
8   chr15   21000617       22448393     NR_027053     LOC646214
9   chr15   21000617       22448393     NR_028067        OR4N3P
10  chr15   21000617       22448393     NR_028506         NF1P2
12  chr15   21000617       22448393     NR_036062     MIR3118-2
13  chr15   21000617       22448393     NR_036063     MIR3118-3
14  chr15   21000617       22448393     NR_040094     LINC01193
15  chr15   21000617       22448393     NR_049895     MIR5701-2
16  chr15   21000617       22448393     NR_110480  LOC101927079
20  chr15   21000617       22448393     NR_128721     MIR5701-3
21  chr15   21000617       22448393     NR_135694   IGHV1OR15-1
22   chr7  110629642      110851266  NM_001099658         LRRN3
23   chr7  110629642      110851266  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr16    8651142        8819046  NM_000663      ABAT
3  chr16    8651142        8819046  NM_024109   METTL22,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10  120500008      121875315  NM_001005339     RGS10
1   chr10  120500008      121875315  NM_001243194    INPP5F
3   chr10  120500008      121875315  NM_001256378     MCMBP
5   chr10  120500008      121875315  NM_001303113    FAM45A
6   chr10  120500008      121875315  NM_001323969     TIAL1
8   chr10  120500008      121875315     NM_003750     EIF3A
9   chr10  120500008      121875315     NM_004281      BAG3
10  chr10  120500008      121875315     NM_005308      GRK5
11  chr10  120500008      121875315     NM_007190   SEC23IP
13  chr10  120500008      121875315     NM_153810    CACUL1
14  chr10  120500008      121875315     NM_199461    NANOS1
15  chr10  120500008      121875315     NR_002917   SNORA19
16  chr10  120500008      121875315     NR_027141   FAM45BP
17  chr10  120500008      121875315     NR_039829   MIR4681
18  chr10  120500008      121875315     NR_039830   MIR4682
19  chr10  120500008      121875315     NR_110305     SFXN4
20  chr10  120500008      121875315     NR_126103     PRDX3,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr1  171288763      171480161  NM_002022          FMO4
1  chr1  171288763      171480161  NM_015172        PRRC2C
2  chr1  171288763      171480161  NR_002719        TOP1P1
3  chr8   58151391       58294779  NR_026772     LINC00588
4  chr8   58151391       58294779  NR_038874     LOC286177
5  chr8   58151391       58294779  NR_125818  LOC101929488
6  chr9  101930408      102182641  NM_006808        SEC61B
7  chr9  101930408      102182641  NM_033087          ALG2
8  chr9  101930408      102182641  NR_102270          NAMA,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr18   63444177       63699577  NM_001317214      CDH7,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81471970       81604112  NM_001278495      NUTM2B
1   chr10   81471970       81604112     NR_029407   LOC642361
2   chr10   81471970       81604112     NR_120611  NUTM2B-AS1
5   chr19   57867925       58025066  NM_001023561      ZNF749
6   chr19   57867925       58025066  NM_001098491      ZNF419
7   chr19   57867925       58025066  NM_001144068      ZNF772
8   chr19   57867925       58025066  NM_001172773      ZNF548
9   chr19   57867925       58025066  NM_001304334      ZNF773
11  chr19   57867925       58025066  NM_001330617       ZNF17
13  chr19   57867925       58025066     NM_020633       VN1R1
14  chr19   57867925       58025066     NM_020657      ZNF304
15  chr19   57867925       58025066     NM_173631      ZNF547
16  chr19   57867925       58025066     NR_002166    TRAPPC2B
18  chr22   19882388       20279608     NM_000754        COMT
21  chr22   19882388       20279608  NM_001190326       DGCR8
22  chr22   19882388       20279608  NM_001243537     CCDC188
23  chr22   19882388       20279608  NM_001278639      RANBP1
26  chr22   19882388       20279608  NM_001282512      TXNRD2
27  chr22   19882388       20279608  NM_001283116      TANGO2
30  chr22   19882388       20279608     NM_001670       ARVCF
33  chr22   19882388       20279608     NM_013373      ZDHHC8
34  chr22   19882388       20279608     NM_022727      TRMT2A
35  chr22   19882388       20279608     NM_023004       RTN4R
36  chr22   19882388       20279608     NR_026919   LINC00896
37  chr22   19882388       20279608     NR_029706      MIR185
38  chr22   19882388       20279608     NR_031618     MIR1286
39  chr22   19882388       20279608     NR_031706     MIR1306
40  chr22   19882388       20279608     NR_037412     MIR3618
41  chr22   19882388       20279608     NR_038460   LOC284865
42  chr22   19882388       20279608     NR_039918     MIR4761
43  chr22   19882388       20279608     NR_106874     MIR6816
44   chr3  155621113      155824404     NM_003875        GMPS
45   chr7   14928653       15363276  NM_001004320        AGMO
46   chr7  110718542      110865941  NM_001099658       LRRN3
47   chr7  110718542      110865941  NM_001244606      IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  186182687      186299358  NM_001303232      PRG4
1  chr1  186182687      186299358     NM_003292       TPR
2  chr9   39112523       39310058     NM_033655   CNTNAP3,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2   39713068       39813529  NR_037875     LOC728730
1  chr6  162868599      163022915  NM_013988         PARK2
2  chr9   67110708       67607399  NR_002817        AQP7P1
3  chr9   67110708       67607399  NR_136300  LOC102724580,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr9   74727653       74838612  NM_001242505       GDA,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21481630       21674008  NM_001077180        METTL9
2   chr16   21481630       21674008     NM_005849         IGSF6
3   chr16   21481630       21674008     NR_002594      SLC7A5P2
4   chr16   21481630       21674008     NR_027155        SMG1P3
5   chr16   21481630       21674008     NR_049833     MIR3680-2
6   chr16   21481630       21674008     NR_110930  LOC101927814
7    chr2   69581138       70007711     NM_001153         ANXA4
8    chr2   69581138       70007711  NM_001244710         GFPT1
10   chr2   69581138       70007711     NM_014911          AAK1
11   chr2   69581138       70007711     NM_015700          NFU1
12   chr2   69581138       70007711     NR_003705      SNORA36C,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   22194129       23684207  NM_001001413      GOLGA6L1
1   chr15   22194129       23684207  NM_001004719         OR4M2
2   chr15   22194129       23684207  NM_001005241         OR4N4
3   chr15   22194129       23684207  NM_001008860         NIPA2
4   chr15   22194129       23684207  NM_001033028        CYFIP1
5   chr15   22194129       23684207  NM_001102610       TUBGCP5
6   chr15   22194129       23684207  NM_001142275         NIPA1
7   chr15   22194129       23684207  NM_001271664     GOLGA6L22
14  chr15   22194129       23684207     NR_002824       HERC2P2
15  chr15   22194129       23684207     NR_003521       WHAMMP3
16  chr15   22194129       23684207     NR_015416     LOC727924
17  chr15   22194129       23684207     NR_024074      GOLGA8IP
18  chr15   22194129       23684207     NR_027407      GOLGA8DP
19  chr15   22194129       23684207     NR_028067        OR4N3P
20  chr15   22194129       23684207     NR_031672      MIR1268A
21  chr15   22194129       23684207     NR_033350      GOLGA8EP
22  chr15   22194129       23684207     NR_033735        REREP3
23  chr15   22194129       23684207     NR_036470       HERC2P7
24  chr15   22194129       23684207     NR_038843       GOLGA8S
25  chr15   22194129       23684207     NR_039734     MIR4509-3
26  chr15   22194129       23684207     NR_040057     LOC283683
27  chr15   22194129       23684207     NR_110480  LOC101927079
29  chr15   22194129       23684207     NR_135666   IGHV1OR15-3
30  chr15   22194129       23684207     NR_135694   IGHV1OR15-1
31   chr6   65536500       65699221  NM_001142800           EYS,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   37381454       37732446     NM_052997   ANKRD30A
1  chr10   37381454       37732446     NR_104061  LINC00993
2   chr2   26557226       26819667  NM_001029881       CIB4
3   chr2   26557226       26819667  NM_001105519    C2orf70
4   chr2   26557226       26819667  NM_001321975     ADGRF3
5   chr2   26557226       26819667     NM_004802       OTOF
6   chr2   26557226       26819667     NM_033505    SELENOI
7   chr2   26557226       26819667     NM_145038       DRC1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr20   14654854       14766516     NM_080676   MACROD2
1   chr7  110655858      110775860  NM_001099658     LRRN3
2   chr7  110655858      110775860  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   22335370       23204227     NR_047040  LINC00424
1  chr13   22335370       23204227     NR_103810  LINC00540
2   chr2   34719267       34968264     NR_126404  LINC01320
3   chr3    1347116        1852470  NM_001289081      CNTN6,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1   78977860       79078767     NM_000959     PTGFR
1  chr7  110680638      110868818  NM_001099658     LRRN3
2  chr7  110680638      110868818  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   12998377       13189775  NM_001010889       PRAMEF6
1   chr1   12998377       13189775  NM_001010890       PRAMEF9
2   chr1   12998377       13189775  NM_001013407       PRAMEF5
3   chr1   12998377       13189775  NM_001099850      PRAMEF18
4   chr1   12998377       13189775  NM_001100631      PRAMEF22
5   chr1   12998377       13189775  NM_001136561      HNRNPCL2
6   chr1   12998377       13189775  NM_001306072      PRAMEF26
7   chr1   12998377       13189775  NM_001310134      PRAMEF25
8   chr1   12998377       13189775     NR_111945     PRAMEF36P
9   chr1   49082739       49183646  NM_001323575         AGBL4
10  chr2   78782004       79190869     NR_136312  LOC105374820,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83562498       83674142  NM_001142699          DLG2
4   chr13   86021641       86364586     NR_046989     LINC00351
5   chr14   38199259       38394819  NM_001310135          TTC6
6   chr14   38199259       38394819     NR_135286     LINC00517
7    chr2   97163175       97332287  NM_001115016        KANSL3
8    chr2   97163175       97332287  NM_001285485        NEURL3
9    chr2   97163175       97332287  NM_001293083        FER1L5
10   chr2   97163175       97332287  NM_001319085        ARID5A
14   chr2   97163175       97332287     NR_135564  LOC105373496
15   chr3  116130609      116296477  NM_001318915         LSAMP
16   chr7  117588067      117836462     NM_016200          LSM8
17   chr9   95646575       95756707  NM_001083536          FGD3
20   chr9   95646575       95756707     NR_111003     LOC642943,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2  130575041      130718752     NR_026740     LOC389033
1  chr2  130575041      130718752     NR_110285  LOC101927924
2  chr7   64050804       64220261  NM_001282360        ZNF107
3  chr7   64050804       64220261     NR_077227  LOC100128885
5  chr7   64050804       64220261     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144739015      145091130  NM_001002810       PDE4DIP
7    chr1  144739015      145091130  NM_001277444         NBPF9
8    chr1  144739015      145091130  NM_001278267        NBPF20
10   chr1  144739015      145091130     NR_102405         NBPF8
11  chr14   39134689       39283416     NR_039982     LINC00639
12   chr2   78210438       78580662     NR_110287  LOC101927948
13   chr2   78210438       78580662     NR_110288  LOC101927967
14   chr2  107654373      107820732     NR_049853      MIR548AU
15   chr2  110159050      110288709  NM_001099289        SH3RF3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   47836849       47987490  NM_001113498     MDGA2
1   chr16    6762468        6869682  NM_001142334    RBFOX1
4   chr16   21738312       21953434  NM_001161683      OTOA
5   chr16   21738312       21953434  NM_001310148    NPIPB4
8   chr16   21738312       21953434     NR_003370    RRN3P1
9    chr7   21203611       21599059  NM_001277115    DNAH11
10   chr7   21203611       21599059  NM_001326542       SP4
11   chr7   21203611       21599059     NR_031594   MIR1183,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   47902353       49085660     NM_000088        COL1A1
1   chr17   47902353       49085660  NM_001077503          TAC4
2   chr17   47902353       49085660  NM_001144070         ABCC3
3   chr17   47902353       49085660  NM_001166131          EME1
4   chr17   47902353       49085660  NM_001168215        TMEM92
5   chr17   47902353       49085660  NM_001199158          KAT7
6   chr17   47902353       49085660  NM_001199898          PDK2
9   chr17   47902353       49085660  NM_001242791      FLJ45513
10  chr17   47902353       49085660  NM_001243877          TOB1
12  chr17   47902353       49085660  NM_001251971         SPAG9
13  chr17   47902353       49085660  NM_001257359        SAMD14
14  chr17   47902353       49085660  NM_001258372       SPATA20
15  chr17   47902353       49085660     NM_001267          CHAD
16  chr17   47902353       49085660  NM_001288968         ACSF2
17  chr17   47902353       49085660  NM_001330330        LUC7L3
18  chr17   47902353       49085660  NM_001330341       WFIKKN2
19  chr17   47902353       49085660     NM_001934          DLX4
20  chr17   47902353       49085660     NM_002204         ITGA3
24  chr17   47902353       49085660     NM_005220          DLX3
26  chr17   47902353       49085660     NM_016504        MRPL27
27  chr17   47902353       49085660     NM_017957          EPN3
28  chr17   47902353       49085660     NM_018346         RSAD1
29  chr17   47902353       49085660     NM_018509        LRRC59
30  chr17   47902353       49085660     NM_018896       CACNA1G
31  chr17   47902353       49085660     NM_022167         XYLT2
32  chr17   47902353       49085660     NM_032133       MYCBPAP
33  chr17   47902353       49085660     NM_032595       PPP1R9B
34  chr17   47902353       49085660     NM_052855       ANKRD40
38  chr17   47902353       49085660     NR_024193         HILS1
39  chr17   47902353       49085660     NR_038230     LOC284080
40  chr17   47902353       49085660     NR_038439   CACNA1G-AS1
41  chr17   47902353       49085660     NR_038458      TOB1-AS1
42  chr17   47902353       49085660     NR_073199     LINC00483
43  chr17   47902353       49085660     NR_107026       MIR8059
45  chr17   47902353       49085660     NR_110806  LOC101927230
46  chr17   47902353       49085660     NR_125805    TMEM92-AS1
47  chr17   47902353       49085660     NR_135553          SGCA
48  chr17   47902353       49085660     NR_135675  LOC105371824
49   chr9   41513543       44175748  NM_001012419     ANKRD20A3
51   chr9   41513543       44175748  NM_001012421     ANKRD20A2
53   chr9   41513543       44175748  NM_001145196     SPATA31A6
54   chr9   41513543       44175748  NM_001201380      CNTNAP3B
55   chr9   41513543       44175748     NM_199244       FOXD4L4
56   chr9   41513543       44175748     NR_003528       ZNF658B
57   chr9   41513543       44175748     NR_003670        FGF7P3
58   chr9   41513543       44175748     NR_015363         GLIDR
59   chr9   41513543       44175748     NR_026558        AQP7P3
60   chr9   41513543       44175748     NR_026803       FAM74A1
61   chr9   41513543       44175748     NR_027472     LOC642929
62   chr9   41513543       44175748     NR_046175     LOC286297
63   chr9   41513543       44175748     NR_111893     CNTNAP3P2
64   chr9   41513543       44175748     NR_121570  LOC101928381
65   chr9   41513543       44175748     NR_121572      GXYLT1P3
69   chr9   41513543       44175748     NR_126048  LOC102724238
70   chr9   41513543       44175748     NR_126049     LOC554249
71   chr9   41513543       44175748     NR_126166       FAM74A7
72   chr9   41513543       44175748     NR_135597  LOC101928195
73   chr9   41513543       44175748     NR_136299  LOC101929583
74   chr9   41513543       44175748     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    6654634        6964023  NM_001004460        OR10A2
1   chr11    6654634        6964023  NM_001004489        OR2AG1
2   chr11    6654634        6964023  NM_001004490        OR2AG2
3   chr11    6654634        6964023  NM_001004684         OR2D3
4   chr11    6654634        6964023     NM_003696         OR6A2
5   chr11    6654634        6964023     NM_003700         OR2D2
6   chr11    6654634        6964023     NM_003737         DCHS1
7   chr11    6654634        6964023     NM_013250        ZNF215
8   chr11    6654634        6964023     NM_022061        MRPL17
9   chr11    6654634        6964023     NM_178168        OR10A5
10  chr11    6654634        6964023     NM_207186        OR10A4
11  chr11    6654634        6964023     NR_003945        GVINP1
12  chr14   47844100       49230562  NM_001113498         MDGA2
13  chr14   47844100       49230562     NR_037503       MIR548Y
14  chr14   47844100       49230562     NR_039996     LINC00648
15  chr15   28680039       28824172     NR_033351       GOLGA8F
16  chr15   28680039       28824172     NR_033353       GOLGA8G
17  chr15   28680039       28824172     NR_039734     MIR4509-3
18   chr2   97530573       97685260  NM_001122646       FAM178B
21   chr2   97530573       97685260     NM_017789        SEMA4C
22   chr2   97530573       97685260     NR_110209  LOC101927053
23   chr2  167124193      167249757     NM_002977         SCN9A
24   chr2  167124193      167249757     NR_110260  LOC101929680,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143128066      143294972     NR_110761  LOC102723769
1   chr12   27053038       27650445  NM_001080406      C12orf71
2   chr12   27053038       27650445  NM_001145010         SMCO2
3   chr12   27053038       27650445  NM_001171887      FGFR1OP2
5   chr12   27053038       27650445  NM_001248002        ARNTL2
6   chr12   27053038       27650445  NM_001271811         MED21
7   chr12   27053038       27650445     NM_015000        STK38L
8   chr12   27053038       27650445     NM_016551        TM7SF3
9   chr12   27053038       27650445     NM_018164          ASUN
10  chr12   27053038       27650445     NR_109975    ARNTL2-AS1
11  chr22   17265361       17416337     NM_175878          XKR3
12  chr22   17265361       17416337     NR_003607       HSFY1P1
13   chr7   75086718       75202812  NM_001099415       POM121C
14   chr7   75086718       75202812  NM_001243198          HIP1
15   chr7   75086718       75202812  NM_001306141        SPDYE5
16   chr7   75086718       75202812     NR_028059        PMS2P3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   68607729       69119950  NM_001305204      ZFP90
1  chr16   68607729       69119950  NM_001317184       CDH1
2  chr16   68607729       69119950  NM_001317195       CDH3
3  chr16   68607729       69119950     NM_024562     TANGO6
4  chr16   68607729       69119950     NR_106988  MIR7641-2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   23403597       24006501     NR_107021       MIR8054
1  chr18   67776745       68009944  NM_001318520          RTTN
2  chr18   67776745       68009944     NM_004232         SOCS6
3  chr18   67776745       68009944     NR_126336  LOC101927481
4   chr2  194725254      196142612     NR_110222  LOC101927406
5   chr2  194725254      196142612     NR_110223  LOC101927431
6   chr9   39052686       39212398     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   67660824       67783946  NM_001127384        CTNNA3
2   chr7   68624972       69290793  NM_001127231         AUTS2
4   chr7   68624972       69290793     NR_108105  LOC100507468,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr2   47057660       47187342  NM_001171506      MCFD2
3  chr2   47057660       47187342  NM_001288951      TTC7A
5  chr2   47057660       47187342     NR_024452  LINC01119,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12856102       13630179  NM_001009611       PRAMEF4
1    chr1   12856102       13630179  NM_001010889       PRAMEF6
3    chr1   12856102       13630179  NM_001010890       PRAMEF9
4    chr1   12856102       13630179  NM_001012276       PRAMEF8
7    chr1   12856102       13630179  NM_001013407       PRAMEF5
9    chr1   12856102       13630179  NM_001013631      HNRNPCL1
10   chr1   12856102       13630179  NM_001024661      PRAMEF14
11   chr1   12856102       13630179  NM_001039361      PRAMEF10
13   chr1   12856102       13630179  NM_001098376      PRAMEF15
14   chr1   12856102       13630179  NM_001099790      PRAMEF19
15   chr1   12856102       13630179  NM_001099850      PRAMEF18
17   chr1   12856102       13630179  NM_001099851      PRAMEF17
18   chr1   12856102       13630179  NM_001099852      PRAMEF20
19   chr1   12856102       13630179  NM_001100631      PRAMEF22
21   chr1   12856102       13630179  NM_001136561      HNRNPCL2
22   chr1   12856102       13630179  NM_001146181      HNRNPCL3
23   chr1   12856102       13630179  NM_001146344      PRAMEF11
24   chr1   12856102       13630179  NM_001291381     PRAMEF33P
26   chr1   12856102       13630179  NM_001294139       PRAMEF1
27   chr1   12856102       13630179  NM_001300891      PRAMEF27
29   chr1   12856102       13630179  NM_001302551      HNRNPCL4
30   chr1   12856102       13630179  NM_001306072      PRAMEF26
31   chr1   12856102       13630179  NM_001310134      PRAMEF25
33   chr1   12856102       13630179     NM_023014       PRAMEF2
34   chr1   12856102       13630179     NR_111945     PRAMEF36P
36   chr1   87660139       87817410  NM_001290053  LOC101927844
37   chr1   87660139       87817410     NM_006769          LMO4
38  chr16   21548975       21661125  NM_001077180        METTL9
40  chr16   21548975       21661125     NM_005849         IGSF6
41  chr16   21548975       21661125     NR_110930  LOC101927814
42  chr16   28737033       28925469  NM_001145795         SH2B1
44  chr16   28737033       28925469  NM_001199142         EIF3C
45  chr16   28737033       28925469  NM_001286075        ATP2A1
47  chr16   28737033       28925469  NM_001287251        NPIPB9
49  chr16   28737033       28925469  NM_001317856        EIF3CL
50  chr16   28737033       28925469     NM_003321          TUFM
53  chr16   28737033       28925469     NM_024816        RABEP2
54  chr16   28737033       28925469     NM_148416        ATXN2L
55  chr16   28737033       28925469     NR_039872       MIR4721
56  chr16   28737033       28925469     NR_046287    ATP2A1-AS1
57  chr22   20103092       20451934  NM_001242313      TMEM191B
58  chr22   20103092       20451934  NM_001243537       CCDC188
59  chr22   20103092       20451934  NM_001278639        RANBP1
62  chr22   20103092       20451934     NM_013373        ZDHHC8
63  chr22   20103092       20451934     NM_022727        TRMT2A
64  chr22   20103092       20451934     NM_023004         RTN4R
65  chr22   20103092       20451934     NM_033257        DGCR6L
66  chr22   20103092       20451934     NR_003563       PI4KAP1
67  chr22   20103092       20451934     NR_026919     LINC00896
68  chr22   20103092       20451934     NR_031618       MIR1286
69  chr22   20103092       20451934     NR_038460     LOC284865
70  chr22   20103092       20451934     NR_136560       FAM230A
71  chr22   20103092       20451934     NR_136572  LOC101927859
72   chr7   77752763       77979948     NM_012301         MAGI2
73   chr7   77752763       77979948     NR_003680     RPL13AP17,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   69611573       69846633  NM_001244710         GFPT1
1  chr2   69611573       69846633     NM_014911          AAK1
2  chr2   69611573       69846633     NM_015700          NFU1
3  chr2   69611573       69846633     NR_003705      SNORA36C
4  chr6  136911013      137133812     NM_005923        MAP3K5
5  chr6  136911013      137133812     NR_125858  LOC101928461
6  chr6  136911013      137133812     NR_134635  LOC101928429
7  chr6  162696059      162805050     NM_013988         PARK2
8  chr7    9090903       10271810     NR_002790          PER4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   47962101       48698858     NM_000088        COL1A1
1   chr17   47962101       48698858  NM_001166131          EME1
2   chr17   47962101       48698858  NM_001168215        TMEM92
3   chr17   47962101       48698858  NM_001199898          PDK2
6   chr17   47962101       48698858  NM_001257359        SAMD14
7   chr17   47962101       48698858  NM_001258372       SPATA20
8   chr17   47962101       48698858     NM_001267          CHAD
9   chr17   47962101       48698858  NM_001288968         ACSF2
10  chr17   47962101       48698858     NM_001934          DLX4
11  chr17   47962101       48698858     NM_002204         ITGA3
13  chr17   47962101       48698858     NM_005220          DLX3
14  chr17   47962101       48698858     NM_016504        MRPL27
15  chr17   47962101       48698858     NM_017957          EPN3
16  chr17   47962101       48698858     NM_018346         RSAD1
17  chr17   47962101       48698858     NM_018509        LRRC59
18  chr17   47962101       48698858     NM_018896       CACNA1G
19  chr17   47962101       48698858     NM_022167         XYLT2
20  chr17   47962101       48698858     NM_032133       MYCBPAP
21  chr17   47962101       48698858     NM_032595       PPP1R9B
24  chr17   47962101       48698858     NR_024193         HILS1
25  chr17   47962101       48698858     NR_038230     LOC284080
26  chr17   47962101       48698858     NR_038439   CACNA1G-AS1
28  chr17   47962101       48698858     NR_110806  LOC101927230
29  chr17   47962101       48698858     NR_125805    TMEM92-AS1
30  chr17   47962101       48698858     NR_135553          SGCA
31  chr17   47962101       48698858     NR_135675  LOC105371824
32   chr3   60332088       60494694  NM_001320899          FHIT
33   chr4    8955960       11483629     NM_000798          DRD5
34   chr4    8955960       11483629  NM_001001290        SLC2A9
35   chr4    8955960       11483629  NM_001040448       DEFB131
36   chr4    8955960       11483629  NM_001242326      USP17L25
44   chr4    8955960       11483629  NM_001256852      USP17L10
45   chr4    8955960       11483629  NM_001256853      USP17L12
47   chr4    8955960       11483629  NM_001256854      USP17L11
50   chr4    8955960       11483629  NM_001256855      USP17L13
51   chr4    8955960       11483629  NM_001256857      USP17L17
52   chr4    8955960       11483629  NM_001256860      USP17L19
53   chr4    8955960       11483629  NM_001256861      USP17L20
54   chr4    8955960       11483629  NM_001256894      USP17L15
55   chr4    8955960       11483629     NM_005112          WDR1
56   chr4    8955960       11483629     NM_005114        HS3ST1
58   chr4    8955960       11483629     NM_052964          CLNK
59   chr4    8955960       11483629     NM_053042       ZNF518B
60   chr4    8955960       11483629     NR_027279      USP17L6P
61   chr4    8955960       11483629     NR_030298        MIR572
62   chr4    8955960       11483629     NR_031688      MIR548I2
63   chr4    8955960       11483629     NR_036090       MIR3138
64   chr4    8955960       11483629     NR_046416      USP17L9P,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  108444865      108552727     NM_006113       VAV3
1    chr1  108444865      108552727     NR_046653   VAV3-AS1
2   chr13   89234566       89347394     NR_047490  LINC00560
3    chr6  154020696      155037033  NM_001008503      OPRM1
5    chr6  154020696      155037033  NM_001130699     IPCEF1
14   chr6  154020696      155037033     NM_173515     CNKSR3
17   chr9   41881869       41988092     NR_003670     FGF7P3
18   chr9   41881869       41988092     NR_015363      GLIDR,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr16   85241976       85385978  NR_038859  LINC00311
1  chr16   85241976       85385978  NR_049816    MIR5093,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67667243       67850141  NM_001127384    CTNNA3
2  chr16   14817749       14926405  NM_001277323    NPIPA3
4  chr16   14817749       14926405  NM_001277324    NPIPA2
6  chr16   14817749       14926405     NR_023387   ABCC6P2,    chrom  cnv_start  cnv_terminate    tx_name   gene_name
0  chr13   54076768       54744743  NR_047488   LINC00558
1  chr13   54076768       54744743  NR_108062   LINC00458
3  chr21   13472357       14848754  NR_026916  ANKRD30BP2
4  chr21   13472357       14848754  NR_036164   MIR3156-3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48427546       48530863  NM_001005512    OR4A47
1  chr11   83660391       84785823  NM_001142699      DLG2
5  chr16    6499708        6734612  NM_001308117    RBFOX1
7   chr9   17147760       17263599  NM_001114395     CNTLN,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   26638683       26802184  NM_001105519   C2orf70
1  chr2   26638683       26802184     NM_004802      OTOF
2  chr2   26638683       26802184     NM_145038      DRC1
4  chr2  193489754      193799943     NR_002769    PCGEM1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1   49109958       49236969  NM_001302082     BEND5
1  chr1   49109958       49236969  NM_001323575     AGBL4
2  chr3   59997938       60196747  NM_001320899      FHIT
4  chr7   75752493       75894413  NM_001110199     SRRM3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  130546931      130842746  NM_001099771         POTEF
1   chr2  130546931      130842746     NM_032144         RAB6C
2   chr2  130546931      130842746     NR_026740     LOC389033
3   chr2  130546931      130842746     NR_026758        FAR2P1
4   chr2  130546931      130842746     NR_036537     RAB6C-AS1
5   chr2  130546931      130842746     NR_110285  LOC101927924
6   chr4   94179430       94295025     NM_001510         GRID2
7   chr6   45015544       45132594  NM_001261823        SUPT3H
8   chr7   85930184       86519262     NM_000840          GRM3
9   chr7   85930184       86519262  NM_001142749     KIAA1324L
12  chr7   94270010       94401925  NM_001184962         PEG10
13  chr7   94270010       94401925  NM_001301139          SGCE,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr2   47038516       47211399  NM_001171506      MCFD2
3   chr2   47038516       47211399  NM_001288951      TTC7A
5   chr2   47038516       47211399     NR_024452  LINC01119
6   chr2   47038516       47211399     NR_034099  LINC01118
7   chr4  129686786      129788516  NM_001287437      JADE1
13  chr9   41507420       41615317     NR_003528    ZNF658B
14  chr9   41507420       41615317     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr18     620975         827848  NM_001012716     TYMSOS
1   chr18     620975         827848     NM_001071       TYMS
2   chr18     620975         827848  NM_001126123     ENOSF1
3   chr18     620975         827848  NM_001289036      CLUL1
7   chr18     620975         827848     NM_005433       YES1
10   chr2   52264264       52393981     NR_135237  LOC730100,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   31909597       32055118  NM_001265588     ZNF267
1   chr2   51656766       51834908     NR_135237  LOC730100
2   chr3   80808212       81081625     NR_132411  LOC728290,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   60331758       60461417     NR_026946  LINC00301
1   chr4  167641904      168313433  NM_001204353     SPOCK3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143680516      143853499  NM_001123068       PPIAL4G
1    chr1  143680516      143853499     NR_104014     LINC01138
2    chr1  143680516      143853499     NR_111930  LOC100132057
3    chr1  241750243      241909495     NM_001821          CHML
4    chr1  241750243      241909495     NM_003679           KMO
5    chr1  241750243      241909495     NM_014322          OPN3
6    chr1  241750243      241909495     NM_144625         WDR64
7   chr12  130231871      130447197     NM_133448      TMEM132D
8    chr7   81969051       82094391     NM_000722      CACNA2D1
10   chr9   30300619       30428706     NR_046204     LINC01242,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr10   81467703       81579038  NM_001278495      NUTM2B
1  chr10   81467703       81579038     NR_120611  NUTM2B-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143110577      143315583     NR_110761  LOC102723769
1   chr15   51438798       51729868  NM_001330297          GLDN
2   chr15   51438798       51729868     NM_031226       CYP19A1
4   chr15   51438798       51729868     NR_039863       MIR4713
5   chr15   51438798       51729868     NR_107012     MIR7973-1
6   chr15   51438798       51729868     NR_107013     MIR7973-2
7   chr15   97521307       98747422     NM_183376        ARRDC4
8   chr15   97521307       98747422     NR_024172     LINC00923
9   chr15   97521307       98747422     NR_110756  LOC101927310
10  chr15   97521307       98747422     NR_120324  LOC101927286
11  chr15   97521307       98747422     NR_120325     LINC01582
12  chr16   29516655       29787651  NM_001030288           SPN
13  chr16   29516655       29787651  NM_001318249          QPRT
15  chr16   29516655       29787651     NM_175900      C16orf54
16  chr16   29516655       29787651     NR_049833     MIR3680-2
17  chr16   29516655       29787651     NR_135305        SMG1P2
19   chr3  131189663      131422081  NM_001289112         CPNE4
20   chr3  131189663      131422081     NM_007208         MRPL3
23   chr3  131189663      131422081     NR_002985       SNORA58
24   chr4  121625858      121896093     NM_018699         PRDM5
25   chr7  110604772      113078220  NM_001099658         LRRN3
26   chr7  110604772      113078220  NM_001134468        LSMEM1
27   chr7  110604772      113078220  NM_001146266         GPR85
29   chr7  110604772      113078220  NM_001197079         IFRD1
31   chr7  110604772      113078220  NM_001244606        IMMP2L
32   chr7  110604772      113078220  NM_001287497       TMEM168
34   chr7  110604772      113078220     NM_014705         DOCK4
36   chr7  110604772      113078220     NM_021994        ZNF277
38   chr7  110604772      113078220     NM_152556          BMT2
40   chr7  110604772      113078220     NR_024412     LINC00998
41   chr7  110604772      113078220     NR_103806     DOCK4-AS1
42   chr7  110604772      113078220     NR_110158  LOC101928012
43   chr7  110604772      113078220     NR_110160  LOC100996249
44   chr7  110604772      113078220     NR_110162        HRAT17,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  215432962      215854114     NM_000465         BARD1
1   chr2  215432962      215854114  NM_001080500         VWC2L
2   chr2  215432962      215854114     NM_015657        ABCA12
4   chr2  215432962      215854114     NR_110292  LOC101928103
5   chr6  162878367      163504494  NM_001080378         PACRG
7   chr6  162878367      163504494     NM_013988         PARK2
8   chr6  162878367      163504494     NR_110871     PACRG-AS2
10  chr9   31249392       31413478     NR_135134     LINC01243,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67303623       67632430     NM_000695       ALDH3B2
1   chr11   67303623       67632430     NM_000852         GSTP1
3   chr11   67303623       67632430  NM_001166102        NDUFV1
4   chr11   67303623       67632430  NM_001243750         NUDT8
5   chr11   67303623       67632430     NM_005995         TBX10
6   chr11   67303623       67632430     NM_080658          ACY3
8   chr11   67303623       67632430     NR_024249      FAM86C2P
9   chr11   67303623       67632430     NR_033791        DOC2GP
10  chr11   67303623       67632430     NR_130935      C11orf72
11  chr15   30232860       30525965  NM_001282472       GOLGA8J
12  chr15   30232860       30525965  NM_001301025          TJP1
13  chr15   30232860       30525965     NR_026771  DKFZP434L187
14  chr15   30232860       30525965     NR_026859        ULK4P3
15  chr15   30232860       30525965     NR_033933       GOLGA8T
16  chr21   13479264       16287690  NM_001256370        SAMSN1
17  chr21   13479264       16287690  NM_001256579     LOC388813
19  chr21   13479264       16287690  NM_001302998          LIPI
20  chr21   13479264       16287690  NM_001320602         RBM11
21  chr21   13479264       16287690     NM_006948        HSPA13
22  chr21   13479264       16287690     NM_174981         POTED
24  chr21   13479264       16287690     NR_003087        ABCC13
26  chr21   13479264       16287690     NR_026755      CYP4F29P
27  chr21   13479264       16287690     NR_026916    ANKRD30BP2
28  chr21   13479264       16287690     NR_027270   ANKRD20A11P
29  chr21   13479264       16287690     NR_036061     MIR3118-1
30  chr21   13479264       16287690     NR_036164     MIR3156-3
31  chr21   13479264       16287690     NR_046512    SAMSN1-AS1
32  chr21   13479264       16287690     NR_110544  LOC102724188
33  chr21   13479264       16287690     NR_128718     MIR8069-2
34  chr22   20105444       20241953  NM_001243537       CCDC188
35  chr22   20105444       20241953  NM_001278639        RANBP1
38  chr22   20105444       20241953     NM_013373        ZDHHC8
39  chr22   20105444       20241953     NM_023004         RTN4R
40  chr22   20105444       20241953     NR_026919     LINC00896
41  chr22   20105444       20241953     NR_031618       MIR1286
42  chr22   20105444       20241953     NR_038460     LOC284865
43   chr8     152442         378190  NM_001042415        ZNF596
48   chr8     152442         378190     NM_012173        FBXO25
49   chr8     152442         378190     NR_003572     RPL23AP53
50   chr8     152442         378190     NR_103537        FAM87A,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1   48886435       49134830  NM_001286238     SPATA6
1  chr1   48886435       49134830  NM_001323575      AGBL4
2  chr9   25510936       25799655  NM_001004125      TUSC1
3  chr9   25510936       25799655     NR_121604  LINC01241,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   68628897       68888428  NM_001317184          CDH1
1  chr16   68628897       68888428  NM_001317195          CDH3
2  chr16   68628897       68888428     NM_024562        TANGO6
3  chr16   68628897       68888428     NR_106988     MIR7641-2
4  chr21   22329920       22592361     NM_004540         NCAM2
5   chr3   60332037       60442370  NM_001320899          FHIT
6   chr9  102217071      102356232     NR_109802  LOC101928438,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11     740382         850480     NM_001004      RPLP2
1   chr11     740382         850480  NM_001025234     TSPAN4
4   chr11     740382         850480  NM_001039490      CD151
5   chr11     740382         850480  NM_001191060   SLC25A22
7   chr11     740382         850480  NM_001286606    CRACR2B
8   chr11     740382         850480  NM_001293167      PANO1
9   chr11     740382         850480  NM_001318824      PDDC1
11  chr11     740382         850480     NM_006755     TALDO1
12  chr11     740382         850480     NM_016564      CEND1
13  chr11     740382         850480     NM_020376     PNPLA2
14  chr11     740382         850480     NM_021128     POLR2L
16  chr11     740382         850480     NM_145886      PIDD1
17  chr11     740382         850480     NR_002585    SNORA52
18  chr11     740382         850480     NR_126342  LOC171391
19  chr12   72660572       72769848     NM_013381      TRHDE
20  chr12   72660572       72769848     NR_026836  TRHDE-AS1
22  chr15   25820565       25934598     NM_024490     ATP10A
23  chr17    5555703        6561900  NM_001105520  C17orf100
24  chr17    5555703        6561900  NM_001195228     FAM64A
25  chr17    5555703        6561900  NM_001285402      AIPL1
28  chr17    5555703        6561900     NM_014804   KIAA0753
29  chr17    5555703        6561900     NM_015253      WSCD1
30  chr17    5555703        6561900     NM_016060      MED31
31  chr17    5555703        6561900     NM_031220    PITPNM3
32  chr17    5555703        6561900     NM_032731    TXNDC17
33  chr17    5555703        6561900     NR_039745  MIR4520-1
34  chr17    5555703        6561900     NR_039874  MIR4520-2
35  chr17    5555703        6561900     NR_040000  LOC339166
36  chr17    5555703        6561900     NR_045985   ALOX15P1
37  chr18   35143841       35263786     NM_020180      CELF4
38  chr18   35143841       35263786     NR_036202    MIR4318
39   chr4   91117951       91236024  NM_001145065     CCSER1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    7161130        7427559  NM_001018039        SFMBT2
2   chr10    7161130        7427559     NR_132972      SNORD129
3   chr11    6659328        7997117  NM_001003745        OR10A3
4   chr11    6659328        7997117  NM_001004460        OR10A2
5   chr11    6659328        7997117  NM_001004461        OR10A6
6   chr11    6659328        7997117  NM_001004489        OR2AG1
7   chr11    6659328        7997117  NM_001004490        OR2AG2
8   chr11    6659328        7997117  NM_001004684         OR2D3
9   chr11    6659328        7997117  NM_001256568       PPFIBP2
11  chr11    6659328        7997117  NM_001302826        CYB5R2
14  chr11    6659328        7997117     NM_003696         OR6A2
15  chr11    6659328        7997117     NM_003700         OR2D2
16  chr11    6659328        7997117     NM_003737         DCHS1
17  chr11    6659328        7997117     NM_013249        ZNF214
18  chr11    6659328        7997117     NM_013250        ZNF215
19  chr11    6659328        7997117     NM_014469        RBMXL2
21  chr11    6659328        7997117     NM_022061        MRPL17
22  chr11    6659328        7997117     NM_153444         OR5P2
23  chr11    6659328        7997117     NM_153445         OR5P3
24  chr11    6659328        7997117     NM_175733          SYT9
25  chr11    6659328        7997117     NM_176821        NLRP10
26  chr11    6659328        7997117     NM_176822        NLRP14
27  chr11    6659328        7997117     NM_178168        OR10A5
28  chr11    6659328        7997117     NM_198185         OVCH2
29  chr11    6659328        7997117     NM_198474        OLFML1
30  chr11    6659328        7997117     NM_207186        OR10A4
31  chr11    6659328        7997117     NR_003945        GVINP1
32  chr11    6659328        7997117     NR_027711        OR5E1P
33  chr11    6659328        7997117     NR_031683       MIR302E
34  chr11    6659328        7997117     NR_036678     LOC283299
35  chr11    6659328        7997117     NR_103855  LOC100506258
36   chr3   26011959       27178157  NM_001304384         NEK10
37   chr3   26011959       27178157  NM_001317808        LRRC3B
43   chr3  174252831      174636357     NM_207015      NAALADL2
44   chr7     135949         346838  NM_001195127  WI2-2373I1.2
45   chr7     135949         346838     NM_020223        FAM20C
46   chr7     135949         346838     NR_108065  LOC100507642
47   chr7     135949         346838     NR_134324  LOC105375115
48   chr7     135949         346838     NR_134325  LOC102723672
49   chr7  110560449      111057140  NM_001099658         LRRN3
50   chr7  110560449      111057140  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   69634999       69762890     NM_014911          AAK1
1   chr2   69634999       69762890     NM_015700          NFU1
2   chr2   69634999       69762890     NR_003705      SNORA36C
3   chr2  130536625      130954949  NM_001099771         POTEF
4   chr2  130536625      130954949  NM_001258307       CCDC74B
5   chr2  130536625      130954949  NM_001330282         MZT2B
6   chr2  130536625      130954949     NM_017951         SMPD4
7   chr2  130536625      130954949     NM_032144         RAB6C
8   chr2  130536625      130954949     NM_207312        TUBA3E
9   chr2  130536625      130954949     NR_026740     LOC389033
10  chr2  130536625      130954949     NR_026758        FAR2P1
12  chr2  130536625      130954949     NR_033903       MED15P9
13  chr2  130536625      130954949     NR_036537     RAB6C-AS1
14  chr2  130536625      130954949     NR_110285  LOC101927924,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11    6716500        7022771  NM_001004460    OR10A2
1   chr11    6716500        7022771  NM_001004489    OR2AG1
2   chr11    6716500        7022771  NM_001004490    OR2AG2
3   chr11    6716500        7022771  NM_001004684     OR2D3
4   chr11    6716500        7022771     NM_003696     OR6A2
5   chr11    6716500        7022771     NM_003700     OR2D2
6   chr11    6716500        7022771     NM_013249    ZNF214
7   chr11    6716500        7022771     NM_013250    ZNF215
8   chr11    6716500        7022771     NM_178168    OR10A5
9   chr11    6716500        7022771     NM_207186    OR10A4
10  chr11    6716500        7022771     NR_003945    GVINP1
11   chr3  189583334      189719098  NM_001114979      TP63
13   chr3  189583334      189719098  NM_001134418      P3H2
18   chr6  161783666      161889260     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   59086451       59193384  NM_001085487         MYSM1
1   chr11  131432659      131586025  NM_001048209           NTM
2   chr11  131432659      131586025     NR_126159       NTM-AS1
3   chr18   67801855       67929693  NM_001318520          RTTN
4   chr22   17244065       17349815     NM_175878          XKR3
5   chr22   17244065       17349815     NR_003607       HSFY1P1
6    chr3  111564346      111676008  NM_001134437        PHLDB2
9    chr3  111564346      111676008     NM_153268        PLCXD2
10   chr5  119921307      120035409  NM_001300783         PRR16
13   chr7  146483862      146909869     NM_014141       CNTNAP2
14   chr7  146483862      146909869     NR_110829  LOC101928700,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   12850749       13255845  NM_001009611    PRAMEF4
1   chr1   12850749       13255845  NM_001010889    PRAMEF6
2   chr1   12850749       13255845  NM_001010890    PRAMEF9
3   chr1   12850749       13255845  NM_001012276    PRAMEF8
4   chr1   12850749       13255845  NM_001013407    PRAMEF5
5   chr1   12850749       13255845  NM_001013631   HNRNPCL1
6   chr1   12850749       13255845  NM_001099850   PRAMEF18
7   chr1   12850749       13255845  NM_001100631   PRAMEF22
8   chr1   12850749       13255845  NM_001136561   HNRNPCL2
9   chr1   12850749       13255845  NM_001146181   HNRNPCL3
10  chr1   12850749       13255845  NM_001146344   PRAMEF11
11  chr1   12850749       13255845  NM_001294139    PRAMEF1
12  chr1   12850749       13255845  NM_001302551   HNRNPCL4
13  chr1   12850749       13255845  NM_001306072   PRAMEF26
14  chr1   12850749       13255845  NM_001310134   PRAMEF25
16  chr1   12850749       13255845     NM_023014    PRAMEF2
17  chr1   12850749       13255845     NR_111945  PRAMEF36P
19  chr1  144724072      144898796  NM_001002811    PDE4DIP
23  chr1  144724072      144898796  NM_001277444      NBPF9
24  chr1  144724072      144898796  NM_001278267     NBPF20
25  chr1  144724072      144898796     NR_102405      NBPF8
26  chr4   30700145       30810190  NM_001173523      PCDH7
29  chr4   69315672       69433528     NM_001077    UGT2B17
30  chr4   69315672       69433528     NM_014058  TMPRSS11E
31  chr5   17755649       17946816     NR_134286  LOC646241
33  chr7  110623179      111964959  NM_001099658      LRRN3
34  chr7  110623179      111964959  NM_001244606     IMMP2L
35  chr7  110623179      111964959     NM_014705      DOCK4
36  chr7  110623179      111964959     NM_021994     ZNF277
38  chr7  110623179      111964959     NR_103806  DOCK4-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143685986      143827990  NM_001123068       PPIAL4G
1   chr1  143685986      143827990     NR_104014     LINC01138
2   chr1  143685986      143827990     NR_111930  LOC100132057
3  chr16    6552909        6713220  NM_001308117        RBFOX1
5   chr3    1143542        1625286  NM_001289081         CNTN6
6   chr4   75349924       75523093     NM_001657          AREG
7   chr4  189398816      189554755     NR_033869     LINC01060,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   21001268       21274990  NM_001277303     POTEB2
1  chr15   21001268       21274990     NM_207355     POTEB3
2  chr15   21001268       21274990     NR_028506      NF1P2
3  chr15   21001268       21274990     NR_036062  MIR3118-2
4  chr15   21001268       21274990     NR_040094  LINC01193
5  chr15   21001268       21274990     NR_049895  MIR5701-2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   42661215       42963308  NM_001130447     HAUS2
1   chr15   42661215       42963308  NM_001284306    ZNF106
4   chr15   42661215       42963308     NM_003825    SNAP23
5   chr15   42661215       42963308     NM_020759    STARD9
6   chr15   42661215       42963308     NM_153260    LRRC57
7   chr15   42661215       42963308     NM_173087     CAPN3
10  chr16   83114929       83292760  NM_001220488     CDH13
12   chr3  105572207      105796261  NM_001321786      CBLB
18   chr4  121668893      121769614     NM_018699     PRDM5,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr5      71140         176982  NM_052909  PLEKHG4B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   25220700       26571058  NM_001008564      NUP58
1   chr13   25220700       26571058  NM_001184993      RNF17
2   chr13   25220700       26571058  NM_001185085     ATP12A
3   chr13   25220700       26571058  NM_001313741     ATP8A2
4   chr13   25220700       26571058     NM_004685      MTMR6
6   chr13   25220700       26571058     NM_030979     PABPC3
7   chr13   25220700       26571058     NM_152704      AMER2
9   chr13   25220700       26571058     NR_026730    TPTE2P1
10  chr13   25220700       26571058     NR_047594      CENPJ
11  chr13   25220700       26571058     NR_120427  LINC01053
12  chr13   25220700       26571058     NR_120428  LINC00463, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56963725       58262247  NM_001190478      MTRNR2L5
1   chr10   56963725       58262247     NM_007057         ZWINT
2    chr2  185171521      185387422     NR_039638     MIR548AE1
3   chr20   10878583       11163126     NR_109866  LOC101929413
4   chr21   23026000       23692441     NR_038400     LINC00308
5   chr21   23026000       23692441     NR_038872     LINC00317
6   chr21   23026000       23692441     NR_109958     LINC01425
7   chr21   23026000       23692441     NR_109959  LOC101927843
8   chr22   19931209       20102631     NM_000754          COMT
11  chr22   19931209       20102631  NM_001190326         DGCR8
12  chr22   19931209       20102631  NM_001283116        TANGO2
15  chr22   19931209       20102631     NM_001670         ARVCF
17  chr22   19931209       20102631     NM_022727        TRMT2A
18  chr22   19931209       20102631     NR_029706        MIR185
19  chr22   19931209       20102631     NR_031706       MIR1306
20  chr22   19931209       20102631     NR_037412       MIR3618
21  chr22   19931209       20102631     NR_039918       MIR4761
22  chr22   19931209       20102631     NR_106874       MIR6816
23   chr7   75908984       76068393  NM_001110199         SRRM3
24   chr7   75908984       76068393  NM_001110354           ZP3
25   chr7   75908984       76068393     NM_001540         HSPB1
27   chr7   75908984       76068393     NM_012479         YWHAG
28   chr7   75908984       76068393     NM_080744         SSC4D
29   chr7  110448923      110879878  NM_001099658         LRRN3
30   chr7  110448923      110879878  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr14   26979856       27112872  NM_002515     NOVA1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   19646321       21234926  NM_001039649         ZMYM5
1   chr13   19646321       21234926  NM_001042414         PSPC1
2   chr13   19646321       21234926  NM_001110221          GJB6
4   chr13   19646321       21234926  NM_001190964         ZMYM2
6   chr13   19646321       21234926  NM_001271850         TPTE2
7   chr13   19646321       21234926  NM_001318493         IFT88
8   chr13   19646321       21234926     NM_004004          GJB2
9   chr13   19646321       21234926     NM_006001        TUBA3C
11  chr13   19646321       21234926     NM_015974         CRYL1
12  chr13   19646321       21234926     NM_017520      MPHOSPH8
13  chr13   19646321       21234926     NM_021954          GJA3
17  chr13   19646321       21234926     NR_027248     ANKRD26P3
18  chr13   19646321       21234926     NR_034026     LINC00421
19  chr13   19646321       21234926     NR_039721       MIR4499
20  chr13   19646321       21234926     NR_046988     LINC00350
23  chr13   19646321       21234926     NR_126054  LOC101928697
24  chr13   19646321       21234926     NR_126380     LINC01072
25  chr14   42146020       42324585  NM_001346175         LRFN5
26   chr5   98681215       98931542     NR_110562  CTD-2151A2.1
27   chr6  161972433      162209177     NM_013988         PARK2
28   chr9   28610589       29019692  NM_001258282        LINGO2
30   chr9   28610589       29019692     NR_030597        MIR876
31   chr9   28610589       29019692     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   52785528       54341769  NM_001080534    UNC13C
1   chr15   52785528       54341769  NM_001142495     MYO5A
2   chr15   52785528       54341769  NM_001286495   FAM214A
3   chr15   52785528       54341769  NM_001306191    ARPP19
8   chr15   52785528       54341769     NM_004498   ONECUT1
10  chr15   52785528       54341769     NM_182758     WDR72,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   25069915       25174709  NM_001009909         LUZP2
1    chr2   51178357       51313744  NM_001330079         NRXN1
4    chr2   51178357       51313744     NR_135237     LOC730100
5   chr20   14643145       14820726     NM_080676       MACROD2
6   chr21   29438996       29544336     NR_126010     LOC284825
8   chr21   29438996       29544336     NR_126012  LOC101927973
9    chr7   75793877       75960236  NM_001110199         SRRM3
10   chr7   75793877       75960236     NM_001540         HSPB1
11   chr7   75793877       75960236     NM_012479         YWHAG
12   chr8   87997955       88313895     NM_173538         CNBD1
13   chr9   16793565       17091225     NM_017637          BNC2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   28448725       28561608     NM_000086       CLN3
2   chr16   28448725       28561608  NM_001042483      NUPR1
6   chr16   28448725       28561608     NM_018690      APOBR
7   chr16   28448725       28561608     NM_145659       IL27
8   chr16   68595297       68901191  NM_001305204      ZFP90
10  chr16   68595297       68901191  NM_001317184       CDH1
11  chr16   68595297       68901191  NM_001317195       CDH3
12  chr16   68595297       68901191     NM_024562     TANGO6
13  chr16   68595297       68901191     NR_106988  MIR7641-2
14   chr2   39699752       39875176     NR_037875  LOC728730,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14895663       15037298     NM_080676      MACROD2
1  chr20   14895663       15037298     NR_037841  MACROD2-AS1
3   chr7  110511399      110771728  NM_001099658        LRRN3
4   chr7  110511399      110771728  NM_001244606       IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   12784002       13180974  NM_001009611       PRAMEF4
1   chr1   12784002       13180974  NM_001010889       PRAMEF6
2   chr1   12784002       13180974  NM_001010890       PRAMEF9
3   chr1   12784002       13180974  NM_001012276       PRAMEF8
4   chr1   12784002       13180974  NM_001013407       PRAMEF5
5   chr1   12784002       13180974  NM_001013631      HNRNPCL1
6   chr1   12784002       13180974  NM_001080830      PRAMEF12
7   chr1   12784002       13180974  NM_001099850      PRAMEF18
8   chr1   12784002       13180974  NM_001100631      PRAMEF22
9   chr1   12784002       13180974  NM_001103170       AADACL3
10  chr1   12784002       13180974  NM_001146181      HNRNPCL3
11  chr1   12784002       13180974  NM_001146344      PRAMEF11
12  chr1   12784002       13180974  NM_001294139       PRAMEF1
13  chr1   12784002       13180974  NM_001302551      HNRNPCL4
14  chr1   12784002       13180974  NM_001306072      PRAMEF26
15  chr1   12784002       13180974  NM_001310134      PRAMEF25
17  chr1   12784002       13180974     NM_023014       PRAMEF2
18  chr1   12784002       13180974     NM_152290      C1orf158
19  chr1   12784002       13180974     NR_111945     PRAMEF36P
20  chr3  118665765      118775451  NM_001015887        IGSF11
22  chr3  118665765      118775451     NR_046230    IGSF11-AS1
23  chr5   66199401       67537190  NM_001164664         MAST4
27  chr5   66199401       67537190     NM_005582         CD180
29  chr5   66199401       67537190     NM_181523        PIK3R1
30  chr5   66199401       67537190     NR_105003  LOC102467655
31  chr5   66199401       67537190     NR_111908     MAST4-AS1
32  chr5   66199401       67537190     NR_130779  LOC101928858,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    6752957        7615614  NM_001004460        OR10A2
1   chr11    6752957        7615614  NM_001004489        OR2AG1
2   chr11    6752957        7615614  NM_001004490        OR2AG2
3   chr11    6752957        7615614  NM_001004684         OR2D3
4   chr11    6752957        7615614     NM_003621       PPFIBP2
5   chr11    6752957        7615614     NM_003696         OR6A2
6   chr11    6752957        7615614     NM_003700         OR2D2
7   chr11    6752957        7615614     NM_013249        ZNF214
8   chr11    6752957        7615614     NM_013250        ZNF215
9   chr11    6752957        7615614     NM_014469        RBMXL2
10  chr11    6752957        7615614     NM_175733          SYT9
11  chr11    6752957        7615614     NM_176822        NLRP14
12  chr11    6752957        7615614     NM_178168        OR10A5
13  chr11    6752957        7615614     NM_198474        OLFML1
14  chr11    6752957        7615614     NM_207186        OR10A4
15  chr11    6752957        7615614     NR_031683       MIR302E
16  chr11    6752957        7615614     NR_103855  LOC100506258
17   chr4   98381778       98511747     NM_174952         STPG2
18   chr4   98381778       98511747     NR_102713     STPG2-AS1
19   chr6  146472266      146821108  NM_001278064          GRM1,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr10   54211305       54345105  NR_120641  LINC01468,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1  187246268      187387570     NR_126347    LINC01036
1  chr20   14744959       14986812     NM_080676      MACROD2
2  chr20   14744959       14986812     NR_037841  MACROD2-AS1
4   chr9   28536327       28785938  NM_001258282       LINGO2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr16   71041520       71190247  NM_001198542     HYDIN
3    chr2  153115567      153235512     NM_052905     FMNL2
4    chr4   71369234       72890663     NM_000583        GC
5    chr4   71369234       72890663     NM_000788       DCK
6    chr4   71369234       72890663  NM_001037442     RUFY3
7    chr4   71369234       72890663  NM_001098477     GRSF1
8    chr4   71369234       72890663  NM_001098484    SLC4A4
12   chr4   71369234       72890663  NM_001244766     MOB1B
14   chr4   71369234       72890663  NM_001286731      AMTN
20   chr4   71369234       72890663     NM_016519      AMBN
21   chr4   71369234       72890663     NM_020368      UTP3
22   chr4   71369234       72890663     NM_031889      ENAM
23   chr4   71369234       72890663     NM_144646    JCHAIN
24   chr9   39062348       39191067     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   31355913       31483768  NM_001304274     IMMP1L
1   chr11   31355913       31483768     NM_181706    DNAJC24
2   chr11   31355913       31483768     NM_181807      DCDC1
3   chr12    5061423        5167713     NM_002234      KCNA5
4    chr2  185144879      185296602     NR_039638  MIR548AE1
5    chr3  162864417      163005853     NR_033945  LINC01192
6    chr4    9043985        9564546  NM_001040448    DEFB131
7    chr4    9043985        9564546  NM_001242326   USP17L25
15   chr4    9043985        9564546  NM_001256852   USP17L10
16   chr4    9043985        9564546  NM_001256853   USP17L12
18   chr4    9043985        9564546  NM_001256854   USP17L11
21   chr4    9043985        9564546  NM_001256855   USP17L13
22   chr4    9043985        9564546  NM_001256857   USP17L17
23   chr4    9043985        9564546  NM_001256860   USP17L19
24   chr4    9043985        9564546  NM_001256861   USP17L20
25   chr4    9043985        9564546  NM_001256894   USP17L15
26   chr4    9043985        9564546     NR_027279   USP17L6P
27   chr4    9043985        9564546     NR_031688   MIR548I2
28   chr4    9043985        9564546     NR_046416   USP17L9P
29   chr8  135661602      135774959  NM_001174158       ZFAT,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   28646004       28991673  NM_001282468    GOLGA8M
1  chr15   28646004       28991673     NR_026589    WHAMMP2
2  chr15   28646004       28991673     NR_033351    GOLGA8F
3  chr15   28646004       28991673     NR_033353    GOLGA8G
4  chr15   28646004       28991673     NR_036443    HERC2P9
5  chr15   28646004       28991673     NR_039734  MIR4509-3
7   chr9    9891483       10179438     NM_002839      PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21500464       21632415  NM_001077180        METTL9
2   chr16   21500464       21632415     NR_002594      SLC7A5P2
3   chr16   21500464       21632415     NR_027155        SMG1P3
4   chr16   21500464       21632415     NR_049833     MIR3680-2
5   chr16   21500464       21632415     NR_110930  LOC101927814
6   chr16   21857512       21960779  NM_001310148        NPIPB4
7    chr3  159977789      160239387  NM_001190241         IFT80
9    chr3  159977789      160239387  NM_001288753          SMC4
10   chr3  159977789      160239387     NM_002268         KPNA4
12   chr3  159977789      160239387     NM_173084        TRIM59
13   chr3  159977789      160239387     NR_003001       SCARNA7
14   chr3  159977789      160239387     NR_029525       MIR16-2
15   chr3  159977789      160239387     NR_029663        MIR15B
16   chr4   69284734       69421136     NM_001077       UGT2B17
17   chr4   69284734       69421136     NM_014058     TMPRSS11E
18   chr9   88344879       88448951  NM_001286717       AGTPBP1
19   chr9   88344879       88448951     NR_029410     LOC389765,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   86100151       86211736     NM_017953    ZNHIT6
1    chr1   86100151       86211736     NM_152890   COL24A1
2    chr1  108435082      108650408     NM_006113      VAV3
3    chr1  108435082      108650408     NR_046653  VAV3-AS1
4    chr1  108435082      108650408     NR_107006   MIR7852
5   chr11    7611942        7786939  NM_001256568   PPFIBP2
7   chr11    7611942        7786939  NM_001302826    CYB5R2
11  chr11    7611942        7786939     NM_198185     OVCH2
12  chr18   64248901       64351482     NM_021153     CDH19
13   chr4   94184819       94313498     NM_001510     GRID2
14   chr7  110644236      110815162  NM_001099658     LRRN3
15   chr7  110644236      110815162  NM_001244606    IMMP2L
17   chr9   41896556       42014928     NR_003670    FGF7P3
18   chr9   41896556       42014928     NR_015363     GLIDR,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2  134086427      134343896     NM_207363    NCKAP5
1  chr7    6769447        7037959  NM_001099697  RSPH10B2
2  chr7    6769447        7037959     NM_198097     CCZ1B
3  chr7    6769447        7037959     NR_002217    PMS2CL
4  chr7   75791212       75902171  NM_001110199     SRRM3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  100653140      100766936  NM_001166244         HPSE2
1   chr10  100653140      100766936     NR_106762       MIR6507
2   chr15   30224868       31028100  NM_001039841     ARHGAP11B
3   chr15   30224868       31028100  NM_001282472       GOLGA8J
4   chr15   30224868       31028100  NM_001282484       GOLGA8R
5   chr15   30224868       31028100  NM_001282490       GOLGA8H
6   chr15   30224868       31028100  NM_001301025          TJP1
7   chr15   30224868       31028100     NM_139320      CHRFAM7A
8   chr15   30224868       31028100     NR_026771  DKFZP434L187
9   chr15   30224868       31028100     NR_026858        ULK4P1
10  chr15   30224868       31028100     NR_026859        ULK4P3
11  chr15   30224868       31028100     NR_033933       GOLGA8T
12  chr15   30224868       31028100     NR_038253  LOC100288637
14   chr2   75931295       76117235  NM_001201334         GCFC2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4547597        4693063  NM_001004137        OR52M1
1   chr11    4547597        4693063  NM_001004751        OR51D1
2   chr11    4547597        4693063  NM_001005169        OR52I1
3   chr11    4547597        4693063  NM_001005170        OR52I2
4   chr11    4547597        4693063     NM_018073        TRIM68
5   chr11    4547597        4693063     NM_144663      C11orf40
6   chr11    4547597        4693063     NM_152430        OR51E1
7   chr17   47843846       48038756  NM_001077503          TAC4
8   chr17   47843846       48038756  NM_001199158          KAT7
9   chr17   47843846       48038756  NM_001242791      FLJ45513
10   chr2   63179178       63323738  NM_001142614         EHBP1
12   chr2   63179178       63323738  NM_001199770          OTX1
14   chr2   63179178       63323738     NR_027069  LOC100132215
17   chr7   16693840       16922573  NM_001159767          BZW2
18   chr7   16693840       16922573     NM_006408          AGR2
19   chr7   16693840       16922573     NM_014399       TSPAN13
20   chr7   16693840       16922573     NM_176813          AGR3
21   chr7   75871002       76079926  NM_001110199         SRRM3
22   chr7   75871002       76079926  NM_001110354           ZP3
23   chr7   75871002       76079926     NM_001540         HSPB1
25   chr7   75871002       76079926     NM_012479         YWHAG
26   chr7   75871002       76079926     NM_080744         SSC4D,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr19   34527135       34766355  NM_014686  KIAA0355
1  chr19   34527135       34766355  NM_015578    LSM14A,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   55651772       56049288  NM_001142770    PCDH15
3   chr15   54526370       54733294  NM_001080534    UNC13C
5   chr18   36537954       36888946     NR_024391  MIR924HG
6    chr3    3887107        3997957  NM_001324189     LRRN1
7    chr3  131299038      131557347  NM_001289112     CPNE4
10   chr9   41867897       41991782     NR_003670    FGF7P3
11   chr9   41867897       41991782     NR_015363     GLIDR,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12855650       12988448  NM_001009611    PRAMEF4
1    chr1   12855650       12988448  NM_001012276    PRAMEF8
2    chr1   12855650       12988448  NM_001013631   HNRNPCL1
3    chr1   12855650       12988448  NM_001146181   HNRNPCL3
4    chr1   12855650       12988448  NM_001146344   PRAMEF11
5    chr1   12855650       12988448  NM_001294139    PRAMEF1
6    chr1   12855650       12988448  NM_001302551   HNRNPCL4
8    chr1   12855650       12988448     NM_023014    PRAMEF2
9   chr15   21128994       21785690     NR_028506      NF1P2
10  chr15   21128994       21785690     NR_040094  LINC01193
11  chr15   21128994       21785690     NR_049895  MIR5701-2
12  chr20   14661388       14762463     NM_080676    MACROD2
13   chr7  110686140      110799592  NM_001099658      LRRN3
14   chr7  110686140      110799592  NM_001244606     IMMP2L,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr7  111261911      111586447  NM_014705      DOCK4
1  chr7  111261911      111586447  NR_103806  DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16462192       16563524  NM_001282511        NPIPA8
1   chr16   16462192       16563524     NR_106971     MIR6511A4
2   chr16   21497750       21620874  NM_001077180        METTL9
4   chr16   21497750       21620874     NR_002594      SLC7A5P2
5   chr16   21497750       21620874     NR_027155        SMG1P3
6   chr16   21497750       21620874     NR_049833     MIR3680-2
7   chr16   21497750       21620874     NR_110930  LOC101927814
8    chr4   69263341       69364070     NM_014058     TMPRSS11E
9    chr5     121587         223400  NM_001080478       LRRC14B
10   chr5     121587         223400     NM_004168          SDHA
11   chr5     121587         223400     NM_052909      PLEKHG4B
12   chr5     121587         223400     NM_145265       CCDC127
13   chr9   39077816       39194308     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr17   47917323       48261777     NM_000088     COL1A1
1   chr17   47917323       48261777  NM_001077503       TAC4
2   chr17   47917323       48261777  NM_001199898       PDK2
5   chr17   47917323       48261777  NM_001242791   FLJ45513
6   chr17   47917323       48261777  NM_001257359     SAMD14
7   chr17   47917323       48261777     NM_001934       DLX4
8   chr17   47917323       48261777     NM_002204      ITGA3
10  chr17   47917323       48261777     NM_005220       DLX3
11  chr17   47917323       48261777     NM_032595    PPP1R9B
13  chr17   47917323       48261777     NR_024193      HILS1
14  chr17   47917323       48261777     NR_038230  LOC284080
15  chr17   47917323       48261777     NR_135553       SGCA
16   chr7    3343154        3777777     NM_152744       SDK1,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr5   99813650       99960904  NM_198507   FAM174A,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   12812008       12979514  NM_001009611    PRAMEF4
1   chr1   12812008       12979514  NM_001012276    PRAMEF8
2   chr1   12812008       12979514  NM_001013631   HNRNPCL1
3   chr1   12812008       12979514  NM_001080830   PRAMEF12
4   chr1   12812008       12979514  NM_001146181   HNRNPCL3
5   chr1   12812008       12979514  NM_001146344   PRAMEF11
6   chr1   12812008       12979514  NM_001294139    PRAMEF1
7   chr1   12812008       12979514  NM_001302551   HNRNPCL4
9   chr1   12812008       12979514     NM_023014    PRAMEF2
10  chr1   12812008       12979514     NM_152290   C1orf158
11  chr3   65819411       65955175  NM_001033057      MAGI1
13  chr3   65819411       65955175     NR_046575  MAGI1-AS1
14  chr7  110521962      110649800  NM_001244606     IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr4     132750         308566  NM_001039127     ZNF718
1  chr4     132750         308566  NM_001137608     ZNF732
4  chr4     132750         308566     NR_027481    ZNF876P
7  chr4   69278514       69481168     NM_001077    UGT2B17
8  chr4   69278514       69481168     NM_014058  TMPRSS11E
9  chr8   86682745       86849121     NR_003594   REXO1L2P,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11  122003749      122134231     NR_024430    MIR100HG
1   chr11  122003749      122134231     NR_029477   MIRLET7A2
2   chr11  122003749      122134231     NR_029515      MIR100
9   chr12   57681601       57838872  NM_001330122      R3HDM2
10  chr12   57681601       57838872     NM_005538       INHBC
12  chr15   77852632       77977928  NM_001301186      LINGO1
22  chr15   77852632       77977928     NR_045123  LINGO1-AS1
23  chr15   77852632       77977928     NR_120361  LINGO1-AS2,    chrom  cnv_start  cnv_terminate       tx_name               gene_name
0   chr7   75766055       76924496  NM_001102594                    DTX2
2   chr7   75766055       76924496  NM_001110199                   SRRM3
3   chr7   75766055       76924496  NM_001110354                     ZP3
4   chr7   75766055       76924496     NM_001540                   HSPB1
5   chr7   75766055       76924496     NM_006682                    FGL2
7   chr7   75766055       76924496     NM_012479                   YWHAG
8   chr7   75766055       76924496     NM_020879                 CCDC146
9   chr7   75766055       76924496     NM_030570                   UPK3B
10  chr7   75766055       76924496     NM_080744                   SSC4D
11  chr7   75766055       76924496     NM_152992                  POMZP3
12  chr7   75766055       76924496     NR_003262                  FDPSP2
13  chr7   75766055       76924496     NR_023383  DTX2P1-UPK3BP1-PMS2P11
14  chr7   75766055       76924496     NR_028058                  PMS2P9
15  chr7   75766055       76924496     NR_029411            LOC100133091,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  242456790      243010686  NM_001164356         THAP4
1   chr2  242456790      243010686  NM_001165031         DTYMK
2   chr2  242456790      243010686  NM_001167601          NEU4
4   chr2  242456790      243010686  NM_001287249        D2HGDH
5   chr2  242456790      243010686  NM_001330161          ING5
7   chr2  242456790      243010686     NM_005018         PDCD1
9   chr2  242456790      243010686     NM_022134       GAL3ST2
11  chr2  242456790      243010686     NM_032515           BOK
12  chr2  242456790      243010686     NM_173821          RTP5
13  chr2  242456790      243010686     NM_178326         ATG4B
14  chr2  242456790      243010686     NR_033346       BOK-AS1
15  chr2  242456790      243010686     NR_110220     LINC01237
16  chr2  242456790      243010686     NR_110592  LOC102723927
17  chr2  242456790      243010686     NR_135766     LOC285095
20  chr3  163680812      164666391     NR_031665       MIR1263
21  chr3  163680812      164666391     NR_126405     LINC01324,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   16291034       16760711  NM_001001395       LMO3
1   chr12   16291034       16760711  NM_001170798    SLC15A5
6   chr12   16291034       16760711  NM_001267598      MGST1
12  chr22   20145276       20267071     NM_023004      RTN4R
13  chr22   20145276       20267071     NR_026919  LINC00896
14  chr22   20145276       20267071     NR_031618    MIR1286
15  chr22   20145276       20267071     NR_038460  LOC284865
16   chr5   17700053       17850774     NR_134286  LOC646241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  220036012      220143458     NM_004446          EPRS
1    chr1  220036012      220143458     NR_002753       RNU5F-1
2    chr1  220036012      220143458     NR_046437      SLC30A10
3   chr10   55794725       56029468  NM_001142770        PCDH15
6   chr17     154917         415209  NM_001013672      C17orf97
7   chr17     154917         415209  NM_001128159         VPS53
8   chr17     154917         415209  NM_001190411        RPH3AL
9   chr17     154917         415209     NM_182705         RFLNB
10  chr17     154917         415209     NR_040011  LOC100506388
11  chr17     154917         415209     NR_136407  LOC105371430
12   chr6  162779503      162949859     NM_013988         PARK2
13   chr7  110522671      110644351  NM_001244606        IMMP2L
15   chr9   80091116       80266540     NM_004297         GNA14
16   chr9   80091116       80266540     NR_121184     GNA14-AS1,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr10    1491406        1826579     NM_018702      ADARB2
1  chr10    1491406        1826579     NR_033387  ADARB2-AS1
2  chr16   83124902       83232799  NM_001220488       CDH13
4   chr5   66226649       66340279  NM_001164664       MAST4
9   chr5   66226649       66340279     NR_111908   MAST4-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   60316669       60567257  NM_001310141     MS4A18
1   chr11   60316669       60567257     NM_031457      MS4A8
2   chr11   60316669       60567257     NM_152717     MS4A15
3   chr11   60316669       60567257     NM_206893     MS4A10
4   chr11   60316669       60567257     NR_026946  LINC00301
5   chr14   47770869       48172368  NM_001113498      MDGA2
8    chr2   69558486       70032492     NM_001153      ANXA4
9    chr2   69558486       70032492  NM_001244710      GFPT1
11   chr2   69558486       70032492     NM_014911       AAK1
12   chr2   69558486       70032492     NM_015700       NFU1
13   chr2   69558486       70032492     NR_003705   SNORA36C,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr22   20092886       20208284  NM_001190326      DGCR8
1   chr22   20092886       20208284  NM_001243537    CCDC188
2   chr22   20092886       20208284  NM_001278639     RANBP1
5   chr22   20092886       20208284     NM_013373     ZDHHC8
6   chr22   20092886       20208284     NM_022727     TRMT2A
7   chr22   20092886       20208284     NR_026919  LINC00896
8   chr22   20092886       20208284     NR_038460  LOC284865
9   chr22   20092886       20208284     NR_106874    MIR6816
10   chr3  131224386      132070316     NM_001099       ACPP
12   chr3  131224386      132070316  NM_001289112      CPNE4
15   chr3  131224386      132070316     NR_049890    MIR5704
16   chr7  110573878      111162956  NM_001099658      LRRN3
17   chr7  110573878      111162956  NM_001244606     IMMP2L
19   chr7  145976021      146106947     NM_014141    CNTNAP2
20   chr9  132359878      132516227  NM_001286796      NTMT1
24   chr9  132359878      132516227     NM_004878      PTGES
25   chr9  132359878      132516227     NM_016307      PRRX2
26   chr9  132359878      132516227     NM_177999       ASB6
27   chr9  132359878      132516227     NM_199350    C9orf50
28   chr9  132359878      132516227     NR_132102  PRRX2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145291875      145480486  NM_001039888      ANKRD34A
1    chr1  145291875      145480486  NM_001277444         NBPF9
2    chr1  145291875      145480486  NM_001278267        NBPF20
3    chr1  145291875      145480486  NM_001302371        NBPF10
4    chr1  145291875      145480486  NM_001313972         TXNIP
6    chr1  145291875      145480486     NM_032305       POLR3GL
7    chr1  145291875      145480486     NM_145277          HFE2
8    chr1  145291875      145480486     NM_153713         LIX1L
9    chr1  145291875      145480486     NR_104217       NBPF25P
10   chr1  145291875      145480486     NR_125967  LOC101928979
11  chr11    7598722        8233444  NM_001003745        OR10A3
12  chr11    7598722        8233444  NM_001004461        OR10A6
13  chr11    7598722        8233444  NM_001135109          RIC3
14  chr11    7598722        8233444  NM_001256568       PPFIBP2
16  chr11    7598722        8233444  NM_001302826        CYB5R2
18  chr11    7598722        8233444     NM_003320           TUB
20  chr11    7598722        8233444     NM_003754         EIF3F
22  chr11    7598722        8233444     NM_153444         OR5P2
23  chr11    7598722        8233444     NM_153445         OR5P3
24  chr11    7598722        8233444     NM_176821        NLRP10
26  chr11    7598722        8233444     NM_198185         OVCH2
27  chr11    7598722        8233444     NR_027711        OR5E1P
28  chr11    7598722        8233444     NR_036678     LOC283299
30  chr11    7598722        8233444     NR_120537       TUB-AS1
31  chr11    7598722        8233444     NR_125366        CASC23,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr4    8989973        9347727  NM_001242326   USP17L25
5   chr4    8989973        9347727  NM_001256852   USP17L10
6   chr4    8989973        9347727  NM_001256853   USP17L12
8   chr4    8989973        9347727  NM_001256854   USP17L11
11  chr4    8989973        9347727  NM_001256855   USP17L13
12  chr4    8989973        9347727  NM_001256857   USP17L17
13  chr4    8989973        9347727  NM_001256860   USP17L19
14  chr4    8989973        9347727  NM_001256861   USP17L20
15  chr4    8989973        9347727  NM_001256894   USP17L15
16  chr7   77761933       78227869     NM_012301      MAGI2
17  chr7   77761933       78227869     NR_003680  RPL13AP17,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11  132026631      132152263  NM_001048209       NTM,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr22   20074807       20181513  NM_001190326     DGCR8
1  chr22   20074807       20181513  NM_001243537   CCDC188
2  chr22   20074807       20181513  NM_001278639    RANBP1
5  chr22   20074807       20181513     NM_013373    ZDHHC8
6  chr22   20074807       20181513     NM_022727    TRMT2A
7  chr22   20074807       20181513     NR_106874   MIR6816,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83655717       83788545  NM_001142699          DLG2
4   chr12   19570227       20051971  NM_001267043         AEBP2
6   chr14   45482605       45584798  NM_001308120       FAM179B
7   chr14   45482605       45584798     NM_017922        PRPF39
8   chr14   45482605       45584798     NR_003691      SNORD127
9   chr16   68587840       68699502  NM_001305204         ZFP90
11  chr16   68587840       68699502  NM_001317195          CDH3
12   chr2   97474928       98886124     NM_001079         ZAP70
13   chr2   97474928       98886124  NM_001122646       FAM178B
14   chr2   97474928       98886124  NM_001164315       ANKRD36
16   chr2   97474928       98886124  NM_001320849        FAHD2B
17   chr2   97474928       98886124  NM_001345864         VWA3B
18   chr2   97474928       98886124     NM_001862         COX5B
19   chr2   97474928       98886124     NM_005735        ACTR1B
20   chr2   97474928       98886124     NM_015348       TMEM131
21   chr2   97474928       98886124     NM_016466       ANKRD39
23   chr2   97474928       98886124     NM_017623         CNNM3
24   chr2   97474928       98886124     NM_017789        SEMA4C
25   chr2   97474928       98886124     NM_020184         CNNM4
26   chr2   97474928       98886124     NM_025190      ANKRD36B
28   chr2   97474928       98886124     NM_144994       ANKRD23
31   chr2   97474928       98886124     NR_038386     LINC01125
32   chr2   97474928       98886124     NR_103732  LOC100506076
36   chr2   97474928       98886124     NR_110209  LOC101927053
37   chr2   97474928       98886124     NR_130704  LOC100506123
40   chr4   91210549       91326144  NM_001145065        CCSER1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   54151089       54317226     NR_120641     LINC01468
2   chr5   20453069       20590042  NM_001291956         CDH18
3   chr9   67223077       67406919     NR_002817        AQP7P1
4   chr9   67223077       67406919     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  233751249      233860935     NM_002245      KCNK1
1    chr1  233751249      233860935     NR_039625    MIR4427
2   chr15   28646560       28937540     NR_033351    GOLGA8F
3   chr15   28646560       28937540     NR_033353    GOLGA8G
4   chr15   28646560       28937540     NR_036443    HERC2P9
5   chr15   28646560       28937540     NR_039734  MIR4509-3
7    chr5   20460133       21777932  NM_001291956      CDH18
8    chr5   20460133       21777932  NM_001317227      CDH12
11   chr5   20460133       21777932     NR_027026     GUSBP1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   83960687       84102266  NM_001010848      NRG3
2  chr10   83960687       84102266     NR_120666  NRG3-AS1
3  chr15   52983900       53153012     NM_004498   ONECUT1
5   chr7   21357501       21543945  NM_001326542       SP4
6   chr7   21357501       21543945     NR_031594   MIR1183,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   29754232       29904537     NM_015307      FAM189A1
1   chr2   31377210       31514893  NM_001145122        CAPN14
3   chr2   31377210       31514893     NM_014600          EHD3
4   chr8   58098719       58337405     NR_026772     LINC00588
5   chr8   58098719       58337405     NR_038235     LINC01606
6   chr8   58098719       58337405     NR_038874     LOC286177
7   chr8   58098719       58337405     NR_125818  LOC101929488,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   51443806       51672539  NM_001330297          GLDN
1   chr15   51443806       51672539     NM_031226       CYP19A1
3   chr15   51443806       51672539     NR_039863       MIR4713
4   chr15   51443806       51672539     NR_107012     MIR7973-1
5   chr15   51443806       51672539     NR_107013     MIR7973-2
6   chr15   65461442       65713675     NM_003613          CILP
7   chr15   65461442       65713675     NM_004884        IGDCC3
8   chr15   65461442       65713675     NM_006660          CLPX
9   chr15   65461442       65713675     NM_017851        PARP16
10  chr15   65461442       65713675     NM_020962        IGDCC4
11  chr16   21506669       21655744  NM_001077180        METTL9
13  chr16   21506669       21655744     NM_005849         IGSF6
14  chr16   21506669       21655744     NR_002594      SLC7A5P2
15  chr16   21506669       21655744     NR_027155        SMG1P3
16  chr16   21506669       21655744     NR_049833     MIR3680-2
17  chr16   21506669       21655744     NR_110930  LOC101927814
18   chr2   51338329       51464356     NR_135237     LOC730100
19   chr2   51656135       51843020     NR_135237     LOC730100
20   chr7  110648526      110787878  NM_001099658         LRRN3
21   chr7  110648526      110787878  NM_001244606        IMMP2L
23   chr9     513058         695956  NM_001256876         KANK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   55728166       55864568  NM_001142770        PCDH15
3   chr15   30317391       30743271  NM_001282472       GOLGA8J
4   chr15   30317391       30743271  NM_001282484       GOLGA8R
5   chr15   30317391       30743271     NM_139320      CHRFAM7A
6   chr15   30317391       30743271     NR_026771  DKFZP434L187
7   chr15   30317391       30743271     NR_026859        ULK4P3
8   chr15   30317391       30743271     NR_033933       GOLGA8T
9    chr4  130535428      130781314     NR_110753  LOC101927282
10   chr7   29448647       29709806  NM_001293069          CHN2
14   chr7   29448647       29709806  NM_001329997         PRR15
17   chr7   29448647       29709806     NR_024278     LOC646762,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  244975392      245536694  NM_001143943        EFCAB2
2   chr1  244975392      245536694  NM_001312871         COX20
4   chr1  244975392      245536694     NM_004501        HNRNPU
5   chr1  244975392      245536694     NM_018012        KIF26B
8   chr1  244975392      245536694     NR_111907  LOC101928068
9   chr1  244975392      245536694     NR_132782      SNORA100
10  chr3   60185185       60354211  NM_001320899          FHIT
11  chr9   41452515       41576901  NM_001113541     SPATA31A5
12  chr9   41452515       41576901     NM_015667     SPATA31A7
13  chr9   41452515       41576901     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67979100       68163414  NM_001127384     CTNNA3
2   chr11   67270749       67824645     NM_000695    ALDH3B2
3   chr11   67270749       67824645     NM_000852      GSTP1
5   chr11   67270749       67824645  NM_001161473    ALDH3B1
6   chr11   67270749       67824645  NM_001166102     NDUFV1
7   chr11   67270749       67824645  NM_001243750      NUDT8
9   chr11   67270749       67824645  NM_001318496      CABP2
10  chr11   67270749       67824645     NM_002496     NDUFS8
11  chr11   67270749       67824645     NM_004910    PITPNM1
12  chr11   67270749       67824645     NM_005851    CDK2AP2
13  chr11   67270749       67824645     NM_005995      TBX10
14  chr11   67270749       67824645     NM_006019     TCIRG1
16  chr11   67270749       67824645     NM_030930    UNC93B1
17  chr11   67270749       67824645     NM_080658       ACY3
19  chr11   67270749       67824645     NM_212469       CHKA
20  chr11   67270749       67824645     NR_024249   FAM86C2P
21  chr11   67270749       67824645     NR_033791     DOC2GP
22  chr11   67270749       67824645     NR_039840    MIR4691
24  chr11   67270749       67824645     NR_106811    MIR6753
25  chr11   67270749       67824645     NR_106963    MIR7113
26  chr11   67270749       67824645     NR_130935   C11orf72
27  chr20   14638322       14784081     NM_080676    MACROD2
28  chr21   22664668       23252420     NM_004540      NCAM2
29  chr21   22664668       23252420     NR_038872  LINC00317
30  chr21   22664668       23252420     NR_109958  LINC01425
31   chr7   71437686       71866111  NM_001017440      CALN1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   16426635       16582106  NM_001170798   SLC15A5
1  chr12   16426635       16582106  NM_001267598     MGST1
6  chr16   68790162       68959619  NM_001317184      CDH1
7  chr16   68790162       68959619     NM_024562    TANGO6,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48310293       48490851  NM_001004702      OR4C3
1   chr11   48310293       48490851  NM_001004725      OR4S1
2   chr11   48310293       48490851  NM_001005513     OR4C45
3   chr15   28280036       28692634     NM_000275       OCA2
5   chr15   28280036       28692634     NM_004667      HERC2
6   chr15   28280036       28692634     NR_033351    GOLGA8F
7   chr15   28280036       28692634     NR_033353    GOLGA8G
8   chr15   28280036       28692634     NR_039734  MIR4509-3
9    chr6    1802346        2087613  NM_001253846       GMDS
11   chr9   39119339       40222830  NM_001085452  SPATA31A1
13   chr9   39119339       40222830     NM_033655    CNTNAP3
14   chr9   39119339       40222830     NR_003528    ZNF658B
15   chr9   39119339       40222830     NR_026803    FAM74A1,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr4   94125154       94272072  NM_001510     GRID2
1  chr7    8595301        8769366  NM_152745     NXPH1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63339604       63490290     NR_047029  LINC00448
3   chr15   20640686       20843705  NM_001145004   GOLGA6L6
4   chr15   20640686       20843705     NR_027411   GOLGA8CP
5   chr15   20640686       20843705     NR_036432    HERC2P3
6   chr16   69966462       70104106  NM_001136214    CLEC18A
7   chr16   69966462       70104106  NM_001270453       WWP2
12  chr16   69966462       70104106     NR_003610    PDXDC2P
13  chr16   69966462       70104106     NR_029681     MIR140
14  chr16   69966462       70104106     NR_036265  MIR1972-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81465846       81597792  NM_001278495        NUTM2B
1   chr10   81465846       81597792     NR_029407     LOC642361
2   chr10   81465846       81597792     NR_120611    NUTM2B-AS1
5   chr18   61838226       61966117     NR_033881     LOC284294
6   chr18   61838226       61966117     NR_033983     LINC01538
7    chr2  133687485      133828276     NM_207363        NCKAP5
8    chr2  133687485      133828276     NR_135572  LOC101928185
9   chr20   10839424       10943804     NR_109866  LOC101929413
10  chr20   40596235       40752829     NM_133170         PTPRT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17      89194         586231  NM_001013672      C17orf97
1   chr17      89194         586231  NM_001128159         VPS53
2   chr17      89194         586231  NM_001190411        RPH3AL
4   chr17      89194         586231     NM_182705         RFLNB
5   chr17      89194         586231     NR_040011  LOC100506388
6   chr17      89194         586231     NR_136407  LOC105371430
7    chr2  110156793      110293721  NM_001099289        SH3RF3
8    chr2  110203251      110311344  NM_001099289        SH3RF3
9    chr2  110203251      110311344  NM_001321504        SEPT10
11  chr20   14636381       14911693     NM_080676       MACROD2
12  chr20   14636381       14911693     NR_037841   MACROD2-AS1
14   chr5  120520071      120673570     NR_104999  LOC102467226,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   79539911       79786357  NM_001272020         NRXN3
3  chr14   79539911       79786357     NR_135159  LOC105370586
4  chr16   83967284       84159662  NM_001080442       SLC38A8
5  chr16   83967284       84159662  NM_001146051         HSDL1
6  chr16   83967284       84159662     NM_003791        MBTPS1
7  chr16   83967284       84159662     NM_019065        NECAB2
8  chr16   83967284       84159662     NM_182981        OSGIN1
9   chr7  132787168      132919700     NR_133931  LOC105375512,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr12   85671252       85861797  NM_006982          ALX1
1   chr9   41835093       42233160  NR_003670        FGF7P3
2   chr9   41835093       42233160  NR_015363         GLIDR
5   chr9   41835093       42233160  NR_126048  LOC102724238
6   chr9   41835093       42233160  NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102432231      102771667     NR_110211         OLFM3
1   chr18   56142150       56763669  NM_001289967  LOC101927322
2   chr18   56142150       56763669  NM_001318727        ZNF532
4   chr18   56142150       56763669     NM_006785         MALT1
6   chr18   56142150       56763669     NM_052947         ALPK2
7   chr18   56142150       56763669     NR_024021        OACYLP
8   chr18   56142150       56763669     NR_132963      SNORA108
9   chr19   21654995       21909470  NM_001001415        ZNF429
10  chr19   21654995       21909470     NM_173531        ZNF100
11  chr19   21654995       21909470     NR_037194     LINC00664,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   68061720       68215816  NM_001127384        CTNNA3
2  chr11    4165492        4274559     NR_047550  LOC100506082
3  chr14   47732366       47853972  NM_001113498         MDGA2
6  chr15   30233452       30394501  NM_001282472       GOLGA8J
7  chr15   30233452       30394501  NM_001301025          TJP1
8  chr22   32365105       32498299     NM_000343        SLC5A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   22323653       22470874     NR_047040     LINC00424
1   chr19   24231035       24506347  NM_001278661        ZNF254
4   chr19   24231035       24506347     NR_003603      HAVCR1P1
5    chr9   67040079       69589999  NM_001012419     ANKRD20A3
6    chr9   67040079       69589999  NM_001085457         CBWD6
7    chr9   67040079       69589999  NM_001085476       FOXD4L6
8    chr9   67040079       69589999  NM_001098805     ANKRD20A4
9    chr9   67040079       69589999  NM_001286836         CBWD5
10   chr9   67040079       69589999     NM_032250     ANKRD20A1
11   chr9   67040079       69589999     NR_002817        AQP7P1
12   chr9   67040079       69589999     NR_002836        PGM5P2
13   chr9   67040079       69589999     NR_015361     LOC440896
14   chr9   67040079       69589999     NR_027422        FAM27B
15   chr9   67040079       69589999     NR_031629       MIR1299
16   chr9   67040079       69589999     NR_033907        FRG1JP
17   chr9   67040079       69589999     NR_034006        FRG1HP
19   chr9   67040079       69589999     NR_039689      MIR4477B
20   chr9   67040079       69589999     NR_103833       FAM27E3
21   chr9   67040079       69589999     NR_121606  LOC102723709
22   chr9   67040079       69589999     NR_136300  LOC102724580
23   chr9   67040079       69589999     NR_136306  LOC102725126
24   chr9   67040079       69589999     NR_136310  LOC105379252
25   chr9   67040079       69589999     NR_144466  LOC105379807,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67902187       68072543  NM_001127384        CTNNA3
2    chr2   52239534       52353222     NR_135237     LOC730100
3   chr20   14747863       14855077     NM_080676       MACROD2
4    chr9    6555194        6658887     NM_000170          GLDC
5    chr9   67029795       68570586  NM_001012419     ANKRD20A3
6    chr9   67029795       68570586     NM_032250     ANKRD20A1
7    chr9   67029795       68570586     NR_002817        AQP7P1
8    chr9   67029795       68570586     NR_027422        FAM27B
9    chr9   67029795       68570586     NR_033907        FRG1JP
10   chr9   67029795       68570586     NR_039689      MIR4477B
11   chr9   67029795       68570586     NR_046175     LOC286297
12   chr9   67029795       68570586     NR_103833       FAM27E3
13   chr9   67029795       68570586     NR_121606  LOC102723709
14   chr9   67029795       68570586     NR_135597  LOC101928195
15   chr9   67029795       68570586     NR_136299  LOC101929583
16   chr9   67029795       68570586     NR_136300  LOC102724580
17   chr9   67029795       68570586     NR_144466  LOC105379807,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   20627156       21465249  NM_001145004   GOLGA6L6
1   chr15   20627156       21465249  NM_001277303     POTEB2
2   chr15   20627156       21465249     NM_207355     POTEB3
3   chr15   20627156       21465249     NR_027411   GOLGA8CP
4   chr15   20627156       21465249     NR_027992     NBEAP1
5   chr15   20627156       21465249     NR_028506      NF1P2
6   chr15   20627156       21465249     NR_036062  MIR3118-2
7   chr15   20627156       21465249     NR_036432    HERC2P3
8   chr15   20627156       21465249     NR_040094  LINC01193
9   chr15   20627156       21465249     NR_049895  MIR5701-2
11   chr9  116751462      116897827  NM_001318041     ZNF618
12   chr9  116751462      116897827     NM_001633       AMBP
13   chr9  116751462      116897827     NM_138424      KIF12,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10  135262778      135424201     NM_000773    CYP2E1
1  chr10  135262778      135424201  NM_001143763     SYCE1
4  chr10  135262778      135424201     NR_002934    SCART1
5  chr10  135262778      135424201     NR_033789    SPRNP1
6  chr15   28514571       28614793     NM_004667     HERC2
7  chr16   68590339       68715431  NM_001305204     ZFP90
9  chr16   68590339       68715431  NM_001317195      CDH3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   37563674       37671418  NM_001171170      SLC25A21
1   chr14   37563674       37671418  NM_001195296        MIPOL1
2   chr14   37563674       37671418     NR_033240  SLC25A21-AS1
3   chr15   20706881       20859237  NM_001145004      GOLGA6L6
4   chr15   20706881       20859237     NR_027411      GOLGA8CP
5   chr15   20706881       20859237     NR_036432       HERC2P3
6    chr2  110160836      110306357  NM_001099289        SH3RF3
7    chr2  110160836      110306357  NM_001321504        SEPT10
9    chr3    1087587        1212375  NM_001289081         CNTN6
10   chr4   93782733       94302002     NM_001510         GRID2
11   chr9   16828213       16944884     NM_017637          BNC2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  242426146      243138748  NM_001164356         THAP4
1   chr2  242426146      243138748  NM_001165031         DTYMK
2   chr2  242426146      243138748  NM_001167601          NEU4
4   chr2  242426146      243138748  NM_001271978         STK25
7   chr2  242426146      243138748  NM_001287249        D2HGDH
8   chr2  242426146      243138748  NM_001330161          ING5
10  chr2  242426146      243138748     NM_005018         PDCD1
11  chr2  242426146      243138748     NM_014808         FARP2
13  chr2  242426146      243138748     NM_022134       GAL3ST2
15  chr2  242426146      243138748     NM_032515           BOK
16  chr2  242426146      243138748     NM_173821          RTP5
17  chr2  242426146      243138748     NM_178326         ATG4B
18  chr2  242426146      243138748     NR_033346       BOK-AS1
19  chr2  242426146      243138748     NR_110220     LINC01237
20  chr2  242426146      243138748     NR_110592  LOC102723927
21  chr2  242426146      243138748     NR_130699     LOC728323
22  chr2  242426146      243138748     NR_135766     LOC285095,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4182600        4361165     NR_047550  LOC100506082
1   chr13   80797072       80963978  NM_001318536         SPRY2
4    chr2   35673982       36113094     NR_039629      MIR548AD
5    chr5   28334706       30572042     NR_033961        LSP1P3
6    chr5   28334706       30572042     NR_104628  LOC101929681
7    chr5   28334706       30572042     NR_109948  LOC101929645
8    chr5   28334706       30572042     NR_130777  LOC101929660
9    chr5   28334706       30572042     NR_134264  LOC105374704
10   chr6  162547472      162688521     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  187072770      187270305     NR_126347  LINC01036
1   chr10   54181436       54321083     NR_120641  LINC01468
3    chr2   97214424       97464751  NM_001115016     KANSL3
4    chr2   97214424       97464751  NM_001293083     FER1L5
5    chr2   97214424       97464751  NM_001319085     ARID5A
7    chr2   97214424       97464751  NM_001322354     LMAN2L
8    chr2   97214424       97464751     NM_020184      CNNM4
10   chr2   97214424       97464751     NR_036074    MIR3127
12   chr7   63896991       63999036  NM_001130022     ZNF680,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143716806      143821257  NM_001123068       PPIAL4G
1    chr1  143716806      143821257     NR_104014     LINC01138
2    chr1  143716806      143821257     NR_111930  LOC100132057
3   chr15   21146421       21294801     NR_040094     LINC01193
4   chr20   14493216       15001878     NM_080676       MACROD2
5   chr20   14493216       15001878     NR_037841   MACROD2-AS1
7   chr20   14493216       15001878     NR_104193   MACROD2-IT1
8    chr3  111640918      111759009  NM_001008273        TAGLN3
9    chr3  111640918      111759009  NM_001134437        PHLDB2
11   chr3  111640918      111759009  NM_001272069        ABHD10
14   chr3  111640918      111759009     NR_026734       TMPRSS7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16    8575163        8920832     NM_000303          PMM2
1   chr16    8575163        8920832     NM_000663          ABAT
3   chr16    8575163        8920832  NM_001146336       TMEM114
6   chr16    8575163        8920832     NM_015421       TMEM186
8   chr16    8575163        8920832     NM_024109       METTL22
10   chr2   97160002       97297900  NM_001115016        KANSL3
11   chr2   97160002       97297900  NM_001285485        NEURL3
12   chr2   97160002       97297900  NM_001319085        ARID5A
16   chr2   97160002       97297900     NR_135564  LOC105373496
17   chr2  112420737      113649079     NM_000575          IL1A
18   chr2  112420737      113649079     NM_000576          IL1B
19   chr2  112420737      113649079  NM_001128165         FBLN7
20   chr2  112420737      113649079  NM_001164463         RGPD8
21   chr2  112420737      113649079  NM_001282772        POLR1B
22   chr2  112420737      113649079  NM_001304353        CHCHD5
24   chr2  112420737      113649079  NM_001304361        CKAP2L
25   chr2  112420737      113649079     NM_005054         RGPD5
26   chr2  112420737      113649079     NM_005415       SLC20A1
27   chr2  112420737      113649079     NM_006343         MERTK
29   chr2  112420737      113649079     NM_022662        ANAPC1
30   chr2  112420737      113649079     NM_032494         ZC3H8
31   chr2  112420737      113649079     NM_032824       TMEM87B
32   chr2  112420737      113649079     NM_153712           TTL
33   chr2  112420737      113649079     NM_198581         ZC3H6
34   chr2  112420737      113649079     NR_033871      FLJ42351
35   chr2  112420737      113649079     NR_039929     MIR4771-2
36   chr2  112420737      113649079     NR_136321  LOC105373562,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr7  110607560      111613757  NM_001099658      LRRN3
1  chr7  110607560      111613757  NM_001244606     IMMP2L
2  chr7  110607560      111613757     NM_014705      DOCK4
4  chr7  110607560      111613757     NR_103806  DOCK4-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11    7801918        7920689     NM_153444      OR5P2
1  chr11    7801918        7920689     NM_153445      OR5P3
2  chr11    7801918        7920689     NR_027711     OR5E1P
3  chr11    7801918        7920689     NR_036678  LOC283299
4   chr3   41368487       41525015  NM_001322500       ULK4
6   chr3   60412528       60541620  NM_001320899       FHIT,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   38160776       38262442  NM_001310135      TTC6
1   chr7  110523670      110683279  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  134023523      134189882  NM_001143757        LRRC27
3   chr10  134023523      134189882  NM_001318878        STK32C
11   chr5   17393951       17553360     NR_134270  LOC102723526
13   chr5   17393951       17553360     NR_134273  LOC101929544,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  245024252      245256622  NM_001143943        EFCAB2
2   chr1  245024252      245256622     NM_004501        HNRNPU
4   chr1  245024252      245256622     NR_111907  LOC101928068
5  chr11   95770331       95884698     NM_032427         MAML2
6  chr13   23153072       23537908     NR_033774       BASP1P1
7  chr13   23153072       23537908     NR_138043     LINC00621
8   chr7  152341335      152600489     NM_005431         XRCC2
9   chr7  152341335      152600489     NM_020445        ACTR3B,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr13  113437685      113615194  NM_015205    ATP11A
1   chr7    8739419        8853521  NM_152745     NXPH1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr14   80040370       80190725  NM_001272020        NRXN3
3  chr16    6690719        7252021  NM_001142334       RBFOX1
6  chr20   14807426       14941259     NM_080676      MACROD2
7  chr20   14807426       14941259     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   86316197       87079787     NM_032229    SLITRK6
1   chr21   36050092       36224553  NM_001001890      RUNX1
3   chr21   36050092       36224553  NM_001317009      CLIC6
5   chr21   36050092       36224553     NR_024351  LINC00160
6   chr21   36050092       36224553     NR_038885  LINC01426
8    chr3  111623995      111771249  NM_001008273     TAGLN3
9    chr3  111623995      111771249  NM_001134437     PHLDB2
11   chr3  111623995      111771249  NM_001272069     ABHD10
14   chr3  111623995      111771249     NR_026734    TMPRSS7,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   78986525       79092981     NM_000959     PTGFR
1    chr1   78986525       79092981     NM_006820    IFI44L
2    chr1  144816728      145094122  NM_001002810   PDE4DIP
9    chr1  144816728      145094122  NM_001277444     NBPF9
10   chr1  144816728      145094122  NM_001278267    NBPF20
12   chr1  144816728      145094122     NR_102405     NBPF8
13  chr10  134081799      134198470  NM_001143757    LRRC27
16  chr10  134081799      134198470  NM_001318878    STK32C
23  chr15   28766015       28890000     NR_033351   GOLGA8F
24  chr15   28766015       28890000     NR_033353   GOLGA8G
25  chr21   22357558       22493586     NM_004540     NCAM2
26   chr6  162583994      163092656     NM_013988     PARK2
27   chr7   75757815       76002233  NM_001110199     SRRM3
28   chr7   75757815       76002233     NM_001540     HSPB1
29   chr7   75757815       76002233     NM_012479     YWHAG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21557505       21732530  NM_001077180        METTL9
1   chr16   21557505       21732530  NM_001161683          OTOA
3   chr16   21557505       21732530     NM_005849         IGSF6
6   chr16   21557505       21732530     NR_110930  LOC101927814
7    chr2   25159432       25261441  NM_001198559       DNAJC27
8    chr2   25159432       25261441     NR_034113   DNAJC27-AS1
9    chr2   50750574       50904073  NM_001330082         NRXN1
10   chr9   11744995       12713443     NM_000550         TYRP1
11   chr9   11744995       12713443     NR_125775   LURAP1L-AS1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   75767462       75931511  NM_001110199     SRRM3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  187178618      187279559     NR_126347  LINC01036
1   chr1  224740689      224877198  NM_001322302      CNIH3
5  chr21   22587481       22733733     NM_004540      NCAM2
6   chr4   93747775       94367039     NM_001510      GRID2
7   chr4  165948591      166069682  NM_001100389    TMEM192
8   chr4  165948591      166069682     NM_152620     TRIM60
9   chr6  129254380      129392205  NM_001079823      LAMA2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   67883745       68030565  NM_001127384        CTNNA3
2  chr11  108484619      108617031     NM_004398         DDX10
3   chr6   90225837       90350912  NM_001242809        ANKRD6
6   chr6   90225837       90350912     NM_020466         LYRM2
8   chr6   90225837       90350912     NR_111915  LOC101929057,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   79037547       79284438     NM_006417     IFI44
1   chr1   79037547       79284438     NM_006820    IFI44L
3   chr1  244972996      245106190  NM_001312871     COX20
5   chr1  244972996      245106190     NM_004501    HNRNPU
7   chr1  244972996      245106190     NR_132782  SNORA100
8  chr16   68606277       68752792  NM_001305204     ZFP90
9  chr16   68606277       68752792  NM_001317195      CDH3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   55689879       55861644  NM_001142770    PCDH15
3   chr7  110655952      111061048  NM_001099658     LRRN3
4   chr7  110655952      111061048  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   12846299       12952218  NM_001009611       PRAMEF4
1   chr1   12846299       12952218  NM_001013631      HNRNPCL1
2   chr1   12846299       12952218  NM_001146181      HNRNPCL3
3   chr1   12846299       12952218  NM_001146344      PRAMEF11
4   chr1   12846299       12952218  NM_001294139       PRAMEF1
5   chr1   12846299       12952218  NM_001302551      HNRNPCL4
7   chr1   12846299       12952218     NM_023014       PRAMEF2
8   chr7   64078771       64989647  NM_001007253        ERV3-1
9   chr7   64078771       64989647  NM_001160183        ZNF138
10  chr7   64078771       64989647  NM_001282360        ZNF107
11  chr7   64078771       64989647  NM_001287532         ZNF92
12  chr7   64078771       64989647     NM_015852        ZNF117
13  chr7   64078771       64989647     NM_021148        ZNF273
14  chr7   64078771       64989647     NR_033416        CCT6P3
16  chr7   64078771       64989647     NR_077227  LOC100128885
18  chr7   64078771       64989647     NR_106898       MIR6839
19  chr7  121619751      121821616  NM_001206838        PTPRZ1
20  chr7  121619751      121821616     NM_005763          AASS,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   19592851       19843439  NM_001142308     MALRD1
1   chr15   54555451       54793555  NM_001080534     UNC13C
3   chr16   68593807       69845639     NM_000903       NQO1
4   chr16   68593807       69845639  NM_001039690      CHTF8
6   chr16   68593807       69845639  NM_001199280       HAS3
7   chr16   68593807       69845639  NM_001199434       NIP7
8   chr16   68593807       69845639  NM_001270454       WWP2
11  chr16   68593807       69845639  NM_001305204      ZFP90
13  chr16   68593807       69845639  NM_001317184       CDH1
14  chr16   68593807       69845639  NM_001317195       CDH3
16  chr16   68593807       69845639     NM_005652      TERF2
17  chr16   68593807       69845639     NM_006750      SNTB2
18  chr16   68593807       69845639     NM_013245      VPS4A
19  chr16   68593807       69845639     NM_022341        PDF
20  chr16   68593807       69845639     NM_024562     TANGO6
21  chr16   68593807       69845639     NM_030579      CYB5B
22  chr16   68593807       69845639     NM_032382       COG8
23  chr16   68593807       69845639     NM_032830       UTP4
25  chr16   68593807       69845639     NM_144676      TMED6
26  chr16   68593807       69845639     NM_173214      NFAT5
28  chr16   68593807       69845639     NR_031719    MIR1538
29  chr16   68593807       69845639     NR_074074       NOB1
30  chr16   68593807       69845639     NR_106988  MIR7641-2
31   chr4   69305782       69416983     NM_001077    UGT2B17
32   chr4   69305782       69416983     NM_014058  TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28136227       28307649     NM_000275          OCA2
2   chr16   68611567       68839990  NM_001317184          CDH1
3   chr16   68611567       68839990  NM_001317195          CDH3
4   chr16   68611567       68839990     NR_106988     MIR7641-2
5   chr16   85300728       85459206     NR_038859     LINC00311
6   chr16   85300728       85459206     NR_049816       MIR5093
7    chr2  130605834      130752349     NM_032144         RAB6C
8    chr2  130605834      130752349     NR_026740     LOC389033
9    chr2  130605834      130752349     NR_036537     RAB6C-AS1
10   chr2  130605834      130752349     NR_110285  LOC101927924
11   chr4  190478134      190634842     NR_121679     LINC01262
12   chr4  190478134      190634842     NR_135513  LOC105379514
13   chr4  190543710      190804039     NR_121679     LINC01262
14   chr4  190543710      190804039     NR_132380     LINC01596
15   chr4  190543710      190804039     NR_135513  LOC105379514,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr15   30307178       30440194  NM_001282472     GOLGA8J
1  chr15   30307178       30440194     NR_026859      ULK4P3
2  chr15   30307178       30440194     NR_033933     GOLGA8T
3   chr2  214287902      214507676     NM_024532      SPAG16
4   chr8    6600783        6710059     NM_018361      AGPAT5
5   chr8    6600783        6710059     NM_207411        XKR5
6   chr8    6600783        6710059     NR_039803    MIR4659A
7   chr8    6600783        6710059     NR_039807    MIR4659B
8   chr8    6600783        6710059     NR_045217  GS1-24F4.2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63320963       63466865     NR_047029     LINC00448
3    chr2  234341628      235054230     NM_000463        UGT1A1
4    chr2  234341628      235054230  NM_001001394        DNAJB3
5    chr2  234341628      235054230     NM_001072        UGT1A6
6    chr2  234341628      235054230  NM_001282962         HJURP
7    chr2  234341628      235054230  NM_001287395        MROH2A
8    chr2  234341628      235054230     NM_003648          DGKD
9    chr2  234341628      235054230     NM_006944          SPP2
10   chr2  234341628      235054230     NM_007120        UGT1A4
11   chr2  234341628      235054230     NM_018218         USP40
12   chr2  234341628      235054230     NM_019075       UGT1A10
13   chr2  234341628      235054230     NM_019076        UGT1A8
14   chr2  234341628      235054230     NM_019077        UGT1A7
15   chr2  234341628      235054230     NM_019078        UGT1A5
16   chr2  234341628      235054230     NM_019093        UGT1A3
17   chr2  234341628      235054230     NM_021027        UGT1A9
18   chr2  234341628      235054230     NM_024080         TRPM8
21   chr2  234341628      235054230     NR_024322        MSL3P1
22   chr2  234341628      235054230     NR_037694  LOC100286922
23  chr21   17901957       18062225     NR_027790      MIR99AHG
25  chr21   17901957       18062225     NR_029480      MIRLET7C
26  chr21   17901957       18062225     NR_029514        MIR99A
27  chr21   17901957       18062225     NR_029694      MIR125B2
36   chr5      93612         194277  NM_001080478       LRRC14B
37   chr5      93612         194277     NM_052909      PLEKHG4B
38   chr7   64066589       64168816  NM_001282360        ZNF107
39   chr7   64066589       64168816     NR_077227  LOC100128885
41   chr7   64066589       64168816     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11    4764210        4883921  NM_001004752    OR51F1
1  chr11    4764210        4883921  NM_001004753    OR51F2
2  chr11    4764210        4883921  NM_001004758    OR51S1
3  chr11    4764210        4883921  NM_001005177    OR52R1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   83575470       83697150  NM_001142699        DLG2
4   chr13   93092618       93260955     NM_004466        GPC5
5   chr13   93092618       93260955     NR_049840    MIR548AS
6   chr15   28455491       28952528  NM_001282468     GOLGA8M
7   chr15   28455491       28952528     NM_004667       HERC2
8   chr15   28455491       28952528     NR_033351     GOLGA8F
10  chr15   28455491       28952528     NR_033353     GOLGA8G
12  chr15   28455491       28952528     NR_036443     HERC2P9
13  chr15   28455491       28952528     NR_039734   MIR4509-3
15   chr8  124915738      125019405  NM_001039112      FER1L6
16   chr8  124915738      125019405     NR_040044  FER1L6-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   47838737       48341790  NM_001113498         MDGA2
1  chr14   47838737       48341790     NR_037503       MIR548Y
2  chr14   47838737       48341790     NR_039996     LINC00648
3   chr2  181828546      182060941  NM_001278554        UBE2E3
6   chr2  181828546      182060941     NR_130784  LOC101927156
7   chr9   67013921       67257199     NR_046175     LOC286297
8   chr9   67013921       67257199     NR_135597  LOC101928195
9   chr9   67013921       67257199     NR_136299  LOC101929583,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  144738786      144895380  NM_001002811    PDE4DIP
4   chr1  144738786      144895380  NM_001277444      NBPF9
5   chr1  144738786      144895380  NM_001278267     NBPF20
6   chr1  144738786      144895380     NR_102405      NBPF8
7   chr1  241481093      241616857  NM_001282773       RGS7
8   chr2   46953901       47131618  NM_001171506      MCFD2
11  chr2   46953901       47131618     NM_014011      SOCS5
13  chr2   46953901       47131618     NR_024452  LINC01119
14  chr2   46953901       47131618     NR_034099  LINC01118
15  chr3  163647067      163908312     NR_031665    MIR1263
16  chr4   69251170       69379195     NM_014058  TMPRSS11E,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  186207856      186330785  NM_001303232       PRG4
1   chr1  186207856      186330785     NM_003292        TPR
2  chr15   98238412       98739944     NM_183376     ARRDC4
3  chr15   98238412       98739944     NR_024172  LINC00923
4  chr15   98238412       98739944     NR_120325  LINC01582,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12798363       13057508  NM_001009611    PRAMEF4
1    chr1   12798363       13057508  NM_001010889    PRAMEF6
2    chr1   12798363       13057508  NM_001010890    PRAMEF9
3    chr1   12798363       13057508  NM_001012276    PRAMEF8
4    chr1   12798363       13057508  NM_001013631   HNRNPCL1
5    chr1   12798363       13057508  NM_001080830   PRAMEF12
6    chr1   12798363       13057508  NM_001099850   PRAMEF18
7    chr1   12798363       13057508  NM_001100631   PRAMEF22
8    chr1   12798363       13057508  NM_001146181   HNRNPCL3
9    chr1   12798363       13057508  NM_001146344   PRAMEF11
10   chr1   12798363       13057508  NM_001294139    PRAMEF1
11   chr1   12798363       13057508  NM_001302551   HNRNPCL4
12   chr1   12798363       13057508  NM_001306072   PRAMEF26
13   chr1   12798363       13057508  NM_001310134   PRAMEF25
15   chr1   12798363       13057508     NM_023014    PRAMEF2
16   chr1   12798363       13057508     NM_152290   C1orf158
17   chr1  143551844      143680981     NR_106967    MIR6077
18  chr10   96481827       96892252     NM_000769    CYP2C19
19  chr10   96481827       96892252     NM_000770     CYP2C8
20  chr10   96481827       96892252     NM_000771     CYP2C9
21  chr10   96481827       96892252     NM_000772    CYP2C18
22  chr15   30266490       30380402  NM_001282472    GOLGA8J
23  chr16   68549661       68652003  NM_001305204      ZFP90
25   chr2   35490300       35921255     NR_039629   MIR548AD
26   chr3     796551         968316     NR_110118  LINC01266
27   chr3    1140467        1272473  NM_001289081      CNTN6,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  185878053      186063904     NM_031935        HMCN1
1   chr13   40382683       40815545     NR_033877    LINC00548
2   chr13   40382683       40815545     NR_046870    LINC00332
3   chr18   61793573       61905258     NR_027245    LINC00305
4   chr18   61793573       61905258     NR_033881    LOC284294
5   chr18   61793573       61905258     NR_033983    LINC01538
6    chr2  112371498      112605889     NM_022662       ANAPC1
7    chr2  112371498      112605889     NR_039929    MIR4771-2
8   chr20   14642865       14818289     NM_080676      MACROD2
9    chr9   11741932       14215380     NM_000550        TYRP1
10   chr9   11741932       14215380  NM_001190738         NFIB
11   chr9   11741932       14215380  NM_001261407         MPDZ
15   chr9   11741932       14215380     NM_203403      LURAP1L
16   chr9   11741932       14215380     NR_033863     FLJ41200
17   chr9   11741932       14215380     NR_038194    LINC00583
18   chr9   11741932       14215380     NR_125775  LURAP1L-AS1
19   chr9   11741932       14215380     NR_132976     SNORD137,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28227283       28336946     NM_000275          OCA2
2    chr2   25176194       25342376  NM_001198559       DNAJC27
3    chr2   25176194       25342376  NM_001319099         EFR3B
5    chr2   25176194       25342376     NR_034113   DNAJC27-AS1
6   chr21   22363140       24033786     NM_004540         NCAM2
7   chr21   22363140       24033786     NR_038400     LINC00308
8   chr21   22363140       24033786     NR_038872     LINC00317
9   chr21   22363140       24033786     NR_109958     LINC01425
10  chr21   22363140       24033786     NR_109959  LOC101927843
11   chr4    9026511        9315846  NM_001256852      USP17L10
12   chr4    9026511        9315846  NM_001256853      USP17L12
14   chr4    9026511        9315846  NM_001256854      USP17L11
17   chr4    9026511        9315846  NM_001256855      USP17L13
18   chr4    9026511        9315846  NM_001256857      USP17L17
19   chr4    9026511        9315846  NM_001256860      USP17L19
20   chr4    9026511        9315846  NM_001256861      USP17L20
21   chr4    9026511        9315846  NM_001256894      USP17L15
22   chr4  169187512      169289046  NM_001012967        DDX60L
23   chr4  169187512      169289046     NM_017631         DDX60, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67835386       68070914  NM_001127384        CTNNA3
2   chr15   28668647       28806072     NR_033351       GOLGA8F
3   chr15   28668647       28806072     NR_033353       GOLGA8G
4   chr15   28668647       28806072     NR_039734     MIR4509-3
6   chr15   82865161       83024873  NM_001164465     GOLGA6L10
7   chr15   82865161       83024873  NM_001291420      GOLGA6L9
9   chr15   82865161       83024873     NR_004847      UBE2Q2P2
10  chr15   82865161       83024873     NR_026811     GOLGA2P10
11  chr15   82865161       83024873     NR_045529     ADAMTS7P1
12  chr15   82865161       83024873     NR_102747     LOC727751
13  chr15   82865161       83024873     NR_111962    GOLGA6L17P
14  chr15   82865161       83024873     NR_120378  LOC102724034
15  chr22   19875330       20152627     NM_000754          COMT
18  chr22   19875330       20152627  NM_001190326         DGCR8
19  chr22   19875330       20152627  NM_001243537       CCDC188
20  chr22   19875330       20152627  NM_001278639        RANBP1
23  chr22   19875330       20152627  NM_001282512        TXNRD2
24  chr22   19875330       20152627  NM_001283116        TANGO2
27  chr22   19875330       20152627     NM_001670         ARVCF
30  chr22   19875330       20152627     NM_013373        ZDHHC8
31  chr22   19875330       20152627     NM_022727        TRMT2A
32  chr22   19875330       20152627     NR_029706        MIR185
33  chr22   19875330       20152627     NR_031706       MIR1306
34  chr22   19875330       20152627     NR_037412       MIR3618
35  chr22   19875330       20152627     NR_039918       MIR4761
36  chr22   19875330       20152627     NR_106874       MIR6816
37   chr8  104006089      104465043  NM_001164615          FZD6
38   chr8  104006089      104465043  NM_001256099        CTHRC1
39   chr8  104006089      104465043     NM_001695      ATP6V1C1
41   chr8  104006089      104465043     NM_015420        DCAF13
42   chr8  104006089      104465043     NM_024812         BAALC
43   chr8  104006089      104465043     NM_030780      SLC25A32
45   chr8  104006089      104465043     NR_027071     BAALC-AS2
46   chr8  104006089      104465043     NR_036106       MIR3151
47   chr8  104006089      104465043     NR_109954     BAALC-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87728715       87912376     NM_006769          LMO4
1    chr1   87728715       87912376     NR_038324     LINC01364
2    chr1  142529549      142718167     NR_046228   ANKRD20A12P
3   chr14   47834481       48077485  NM_001113498         MDGA2
4   chr16   29678846       29832962  NM_001030288           SPN
5   chr16   29678846       29832962  NM_001256269         KIF22
7   chr16   29678846       29832962  NM_001256443         PRRT2
8   chr16   29678846       29832962  NM_001276275           MAZ
9   chr16   29678846       29832962  NM_001318249          QPRT
12  chr16   29678846       29832962     NM_005115           MVP
13  chr16   29678846       29832962     NM_024516         PAGR1
14  chr16   29678846       29832962     NM_152338          ZG16
15  chr16   29678846       29832962     NM_175900      C16orf54
16   chr2   97168188       97369605  NM_001115016        KANSL3
17   chr2   97168188       97369605  NM_001285485        NEURL3
18   chr2   97168188       97369605  NM_001293083        FER1L5
19   chr2   97168188       97369605  NM_001319085        ARID5A
23   chr2   97168188       97369605     NR_135564  LOC105373496
24   chr6  120201452      120507568     NR_036098       MIR3144,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr2  112391225      113017352  NM_001128165      FBLN7
1   chr2  112391225      113017352     NM_006343      MERTK
2   chr2  112391225      113017352     NM_022662     ANAPC1
3   chr2  112391225      113017352     NM_032494      ZC3H8
4   chr2  112391225      113017352     NM_032824    TMEM87B
5   chr2  112391225      113017352     NR_039929  MIR4771-2
6   chr4   69225240       69354377     NM_014058  TMPRSS11E
7   chr9  116766024      116930912  NM_001318041     ZNF618
8   chr9  116766024      116930912     NM_001633       AMBP
9   chr9  116766024      116930912     NM_032888    COL27A1
10  chr9  116766024      116930912     NM_138424      KIF12,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   49063045       49225766  NM_001302082         BEND5
1   chr1   49063045       49225766  NM_001323575         AGBL4
2   chr2   39684805       39825596     NR_037875     LOC728730
3   chr3  193055851      193158053     NM_032279       ATP13A4
4   chr3  193055851      193158053     NM_198505       ATP13A5
5   chr9   41874753       42059067     NR_003670        FGF7P3
6   chr9   41874753       42059067     NR_015363         GLIDR
9   chr9   41874753       42059067     NR_126048  LOC102724238
10  chr9   41874753       42059067     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  112358759      113956767  NM_001004440       FAM19A3
1   chr1  112358759      113956767  NM_001042679          RHOC
2   chr1  112358759      113956767  NM_001130079         MOV10
3   chr1  112358759      113956767  NM_001142782         MAGI3
4   chr1  112358759      113956767  NM_001166496       SLC16A1
5   chr1  112358759      113956767  NM_001270945     LOC643355
7   chr1  112358759      113956767  NM_001308264          ST7L
8   chr1  112358759      113956767  NM_001312686         LRIG2
11  chr1  112358759      113956767     NM_004185         WNT2B
12  chr1  112358759      113956767     NM_005167         PPM1J
13  chr1  112358759      113956767     NM_006135        CAPZA1
15  chr1  112358759      113956767     NM_018704     CTTNBP2NL
18  chr1  112358759      113956767     NM_172198         KCND3
20  chr1  112358759      113956767     NR_002796      AKR7A2P1
21  chr1  112358759      113956767     NR_036210       MIR4256
22  chr1  112358759      113956767     NR_038846     LOC643441
23  chr1  112358759      113956767     NR_046619     KCND3-AS1
24  chr1  112358759      113956767     NR_046783     KCND3-IT1
25  chr1  112358759      113956767     NR_103743   SLC16A1-AS1
26  chr1  112358759      113956767     NR_103746     LINC01356
27  chr1  112358759      113956767     NR_103777  LOC100996251
28  chr7  143693406      144168046  NM_001001659        OR2A14
29  chr7  143693406      144168046  NM_001003702      ARHGEF35
30  chr7  143693406      144168046  NM_001004135        OR2A12
31  chr7  143693406      144168046  NM_001004488        OR2A25
32  chr7  143693406      144168046  NM_001005281         OR6B1
33  chr7  143693406      144168046  NM_001005287         OR2A1
35  chr7  143693406      144168046  NM_001005328         OR2A7
36  chr7  143693406      144168046  NM_001005480         OR2A2
37  chr7  143693406      144168046  NM_001080413         NOBOX
38  chr7  143693406      144168046  NM_001278507        CTAGE8
39  chr7  143693406      144168046     NM_005435       ARHGEF5
40  chr7  143693406      144168046     NM_012365         OR2A5
41  chr7  143693406      144168046     NM_022445          TPK1
42  chr7  143693406      144168046     NM_198495        CTAGE4
44  chr7  143693406      144168046     NR_002157        OR2A9P
46  chr7  143693406      144168046     NR_002158       OR2A20P
48  chr7  143693406      144168046     NR_033942     ARHGEF34P
49  chr7  143693406      144168046     NR_126022  LOC101928605
50  chr7  143693406      144168046     NR_126023     OR2A1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   72629879       72786587     NR_126330     LINC01572
1   chr16   79748751       79874778     NR_104660     LINC01229
3   chr16   79748751       79874778     NR_104663        MAFTRR
4    chr3   59990501       60095841  NM_001320899          FHIT
6    chr6  140424893      140551904     NR_037441       MIR3668
7    chr7     115022         238907     NM_020223        FAM20C
8    chr7     115022         238907     NR_108065  LOC100507642
9    chr7     115022         238907     NR_134324  LOC105375115
10   chr7     115022         238907     NR_134325  LOC102723672,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67320289       67566735     NM_000695   ALDH3B2
1   chr11   67320289       67566735     NM_000852     GSTP1
3   chr11   67320289       67566735  NM_001166102    NDUFV1
4   chr11   67320289       67566735  NM_001243750     NUDT8
5   chr11   67320289       67566735     NM_005995     TBX10
6   chr11   67320289       67566735     NM_080658      ACY3
8   chr11   67320289       67566735     NR_024249  FAM86C2P
9   chr11   67320289       67566735     NR_033791    DOC2GP
10  chr11   67320289       67566735     NR_130935  C11orf72
11  chr14   26949985       27056426     NM_002515     NOVA1
13   chr2   52872262       53012327     NR_039630   MIR4431
14   chr7    9377181       10110021     NR_002790      PER4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81451632       81855663  NM_001270367       TMEM254
3   chr10   81451632       81855663  NM_001278495        NUTM2B
4   chr10   81451632       81855663     NM_003019         SFTPD
5   chr10   81451632       81855663     NR_002724         MBL1P
6   chr10   81451632       81855663     NR_027431   TMEM254-AS1
7   chr10   81451632       81855663     NR_029407     LOC642361
8   chr10   81451632       81855663     NR_033857       BMS1P21
9   chr10   81451632       81855663     NR_120611    NUTM2B-AS1
12   chr7   64068225       64284489  NM_001160183        ZNF138
13   chr7   64068225       64284489  NM_001282360        ZNF107
15   chr7   64068225       64284489     NR_077227  LOC100128885
17   chr7   64068225       64284489     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12  130204593      130311137     NM_133448  TMEM132D
1   chr15   20706804       20886152  NM_001145004  GOLGA6L6
2   chr15   20706804       20886152     NR_027411  GOLGA8CP
3   chr15   20706804       20886152     NR_027992    NBEAP1
4   chr15   20706804       20886152     NR_036432   HERC2P3
5    chr2   31378360       31644789     NM_000379       XDH
6    chr2   31378360       31644789  NM_001145122    CAPN14
8    chr2   31378360       31644789     NM_014600      EHD3
9    chr7   75392523       75590690     NM_000941       POR
10   chr7   75392523       75590690  NM_001040457    RHBDD2
11   chr7   75392523       75590690     NM_002991     CCL24
12   chr7   75392523       75590690     NM_006072     CCL26
13   chr7   75392523       75590690     NR_002955  SNORA14A
14   chr7   75392523       75590690     NR_039795   MIR4651,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   78967366       79069411     NM_000959      PTGFR
1    chr1  108437192      108739933     NM_006113       VAV3
2    chr1  108437192      108739933     NM_013386   SLC25A24
4    chr1  108437192      108739933     NR_046653   VAV3-AS1
5    chr1  108437192      108739933     NR_107006    MIR7852
6   chr10  117317704      117635583     NM_207303     ATRNL1
7   chr11    6654413        7004883  NM_001004460     OR10A2
8   chr11    6654413        7004883  NM_001004489     OR2AG1
9   chr11    6654413        7004883  NM_001004490     OR2AG2
10  chr11    6654413        7004883  NM_001004684      OR2D3
11  chr11    6654413        7004883     NM_003696      OR6A2
12  chr11    6654413        7004883     NM_003700      OR2D2
13  chr11    6654413        7004883     NM_003737      DCHS1
14  chr11    6654413        7004883     NM_013250     ZNF215
15  chr11    6654413        7004883     NM_022061     MRPL17
16  chr11    6654413        7004883     NM_178168     OR10A5
17  chr11    6654413        7004883     NM_207186     OR10A4
18  chr11    6654413        7004883     NR_003945     GVINP1
19  chr15   20959505       21102887  NM_001277303     POTEB2
20  chr15   20959505       21102887     NM_207355     POTEB3
21  chr15   20959505       21102887     NR_027992     NBEAP1
22  chr15   20959505       21102887     NR_036062  MIR3118-2
24   chr5  109856922      110397967  NM_001039763    TMEM232
25   chr5  109856922      110397967  NM_001303250   SLC25A46
27   chr9   38963732       39127781     NM_033655    CNTNAP3,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr10   37363009       37468611  NM_052997  ANKRD30A
1   chr5   23853164       24085534  NR_131245   C5orf17
2   chr7  109588821      109730741  NR_003024   EIF3IP1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   84095605       84551610  NM_001142699       DLG2
2   chr6   95345992       96903678     NM_006581       FUT9
3   chr6   95345992       96903678     NM_024641      MANEA
4   chr6   95345992       96903678     NR_047502  MANEA-AS1
6   chr7    9298603        9742897     NR_002790       PER4,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   82365360       82533646  NM_001297704      ADGRL2
2   chr10    1523869        1655870     NM_018702      ADARB2
3   chr10    1523869        1655870     NR_033387  ADARB2-AS1
4   chr15   30259936       30483241  NM_001282472     GOLGA8J
5   chr15   30259936       30483241  NM_001301025        TJP1
6   chr15   30259936       30483241     NR_026859      ULK4P3
7   chr15   30259936       30483241     NR_033933     GOLGA8T
8   chr16   68570545       68751740  NM_001305204       ZFP90
10  chr16   68570545       68751740  NM_001317195        CDH3
11  chr16   79760684       79902120     NR_104660   LINC01229
13  chr16   79760684       79902120     NR_104663      MAFTRR
14   chr4   94158288       94474955     NM_001510       GRID2
15   chr9   30358681       30486670     NR_046204   LINC01242
16   chr9   41473701       41708668  NM_001113541   SPATA31A5
17   chr9   41473701       41708668     NM_015667   SPATA31A7
18   chr9   41473701       41708668     NR_003528     ZNF658B
19   chr9   41473701       41708668     NR_026803     FAM74A1
20   chr9   41547734       41655910     NR_003528     ZNF658B,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   67988686       68141559  NM_001127384        CTNNA3
2  chr17   64581101       64700812     NM_002737         PRKCA
3   chr2  186494300      186746631     NM_173651         FSIP2
4   chr2  186494300      186746631     NR_110214  LOC101927196
7   chr2  186494300      186746631     NR_144453     FSIP2-AS1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  145344564      145446377  NM_001277444         NBPF9
1  chr1  145344564      145446377  NM_001278267        NBPF20
2  chr1  145344564      145446377  NM_001302371        NBPF10
3  chr1  145344564      145446377  NM_001313972         TXNIP
5  chr1  145344564      145446377     NM_145277          HFE2
6  chr1  145344564      145446377     NR_104217       NBPF25P
7  chr1  145344564      145446377     NR_125967  LOC101928979
8  chr9   39122944       39249106     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14866019       16338697  NM_001033087      MACROD2
1  chr20   14866019       16338697     NM_024704       KIF16B
3  chr20   14866019       16338697     NR_037841  MACROD2-AS1
5  chr20   14866019       16338697     NR_130924    LOC613266,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   21695816       21816946  NM_001161683       OTOA
3   chr16   21695816       21816946     NR_003370     RRN3P1
4    chr7   64184849       65407714  NM_001007253     ERV3-1
5    chr7   64184849       65407714  NM_001160183     ZNF138
6    chr7   64184849       65407714  NM_001287532      ZNF92
7    chr7   64184849       65407714     NM_015852     ZNF117
8    chr7   64184849       65407714     NM_021148     ZNF273
9    chr7   64184849       65407714     NM_173517   VKORC1L1
10   chr7   64184849       65407714     NR_002961    SNORA22
11   chr7   64184849       65407714     NR_003110     CCT6P1
12   chr7   64184849       65407714     NR_027392    INTS4P2
13   chr7   64184849       65407714     NR_033416     CCT6P3
14   chr7   64184849       65407714     NR_038378  LOC441242
17   chr9   43321046       44055008  NM_001145196  SPATA31A6
18   chr9   43321046       44055008  NM_001201380   CNTNAP3B
19   chr9   43321046       44055008     NR_111893  CNTNAP3P2
20   chr9   43321046       44055008     NR_126166    FAM74A7,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr7   64050191       65475457     NM_000181          GUSB
1   chr7   64050191       65475457  NM_001007253        ERV3-1
2   chr7   64050191       65475457  NM_001160183        ZNF138
3   chr7   64050191       65475457  NM_001282360        ZNF107
4   chr7   64050191       65475457  NM_001287532         ZNF92
6   chr7   64050191       65475457     NM_015852        ZNF117
7   chr7   64050191       65475457     NM_021148        ZNF273
8   chr7   64050191       65475457     NM_173517      VKORC1L1
9   chr7   64050191       65475457     NR_002961       SNORA22
10  chr7   64050191       65475457     NR_003110        CCT6P1
11  chr7   64050191       65475457     NR_027392       INTS4P2
12  chr7   64050191       65475457     NR_033416        CCT6P3
13  chr7   64050191       65475457     NR_038378     LOC441242
15  chr7   64050191       65475457     NR_077227  LOC100128885
18  chr7   64050191       65475457     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   21654186       21781412     NM_020366     RPGRIP1
1   chr14   21654186       21781412     NM_031314      HNRNPC
2   chr14   21654186       21781412     NR_038970   LINC00641
4   chr15   30286545       30400457  NM_001282472     GOLGA8J
5   chr15   30286545       30400457     NR_026859      ULK4P3
6    chr4    8978661        9757709  NM_001040448     DEFB131
7    chr4    8978661        9757709  NM_001242326    USP17L25
15   chr4    8978661        9757709  NM_001256852    USP17L10
16   chr4    8978661        9757709  NM_001256853    USP17L12
18   chr4    8978661        9757709  NM_001256854    USP17L11
21   chr4    8978661        9757709  NM_001256855    USP17L13
22   chr4    8978661        9757709  NM_001256857    USP17L17
23   chr4    8978661        9757709  NM_001256860    USP17L19
24   chr4    8978661        9757709  NM_001256861    USP17L20
25   chr4    8978661        9757709  NM_001256894    USP17L15
26   chr4    8978661        9757709     NR_027279    USP17L6P
27   chr4    8978661        9757709     NR_031688    MIR548I2
28   chr4    8978661        9757709     NR_046416    USP17L9P
29   chr5  151286689      151448112     NM_000171       GLRA1
30   chr5  151286689      151448112     NR_109876  CTB-12O2.1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67863730       68333299  NM_001127384    CTNNA3
2  chr20   14705635       14857051     NM_080676   MACROD2
3   chr4   93756391       94018832     NM_001510     GRID2
4   chr5   99763723      100057728     NM_198507   FAM174A, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr10   81442491       81587957  NM_001278495      NUTM2B
1  chr10   81442491       81587957     NR_027512     BEND3P3
2  chr10   81442491       81587957     NR_029407   LOC642361
3  chr10   81442491       81587957     NR_120611  NUTM2B-AS1
6  chr14   38221094       38408833  NM_001310135        TTC6
7  chr14   38221094       38408833     NR_135286   LINC00517
8   chr8  111912086      112021394     NR_125416   LINC01608,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   21429843       21600445     NM_130464        NPIPB3
1  chr16   21429843       21600445     NR_002594      SLC7A5P2
2  chr16   21429843       21600445     NR_024456  LOC100190986
3  chr16   21429843       21600445     NR_027155        SMG1P3
4  chr16   21429843       21600445     NR_049833     MIR3680-2
5   chr7  110679223      110827970  NM_001099658         LRRN3
6   chr7  110679223      110827970  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr2   62168825       62271015  NM_001321781    COMMD1
2   chr3   24670141       24902536  NM_001290216      RARB
3   chr4   93279199       93391483     NM_001510     GRID2
4   chr5  109580856      110447741  NM_001039763   TMEM232
5   chr5  109580856      110447741  NM_001303250  SLC25A46
6   chr5  109580856      110447741     NM_033035      TSLP
9   chr5  109580856      110447741     NM_139281     WDR36
10  chr5  109580856      110447741     NR_031644  MIR548F3
12  chr7  110516481      110768714  NM_001099658     LRRN3
13  chr7  110516481      110768714  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    5083663        5306462  NM_001253908        AKR1C3
2   chr10    5083663        5306462     NM_001818        AKR1C4
4   chr10    5083663        5306462     NR_027916       AKR1C8P
5   chr10   25991051       26511612     NM_000818          GAD2
7   chr10   25991051       26511612     NM_017433         MYO3A
8   chr10   25991051       26511612     NR_108067     LINC00836
9   chr10   25991051       26511612     NR_120650  LOC101929073
10  chr11     700668         951404     NM_001004         RPLP2
11  chr11     700668         951404  NM_001025234        TSPAN4
14  chr11     700668         951404  NM_001039490         CD151
15  chr11     700668         951404  NM_001042463        TMEM80
16  chr11     700668         951404  NM_001142675         CHID1
17  chr11     700668         951404  NM_001191060      SLC25A22
20  chr11     700668         951404  NM_001286606       CRACR2B
21  chr11     700668         951404  NM_001293167         PANO1
22  chr11     700668         951404  NM_001318824         PDDC1
24  chr11     700668         951404     NM_006755        TALDO1
25  chr11     700668         951404     NM_012305         AP2A2
26  chr11     700668         951404     NM_016564         CEND1
27  chr11     700668         951404     NM_020376        PNPLA2
28  chr11     700668         951404     NM_021128        POLR2L
29  chr11     700668         951404     NM_022772        EPS8L2
32  chr11     700668         951404     NM_145886         PIDD1
33  chr11     700668         951404     NR_002585       SNORA52
34  chr11     700668         951404     NR_126342     LOC171391
35  chr11   83959963       84105400  NM_001142699          DLG2
39   chr6  162790882      162939617     NM_013988         PARK2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14658053       15112026     NM_080676      MACROD2
1  chr20   14658053       15112026     NR_037841  MACROD2-AS1
3   chr3    4006144        4390980  NM_001243723       SETMAR
5   chr7  110540414      110937386  NM_001099658        LRRN3
6   chr7  110540414      110937386  NM_001244606       IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr3     846731         948544     NR_110118     LINC01266
1  chr7   64053065       64161241  NM_001282360        ZNF107
2  chr7   64053065       64161241     NR_077227  LOC100128885
4  chr7   64053065       64161241     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  135268217      135430353     NM_000773     CYP2E1
1   chr10  135268217      135430353  NM_001143763      SYCE1
4   chr10  135268217      135430353     NR_002934     SCART1
5   chr10  135268217      135430353     NR_033789     SPRNP1
6   chr11   79148534       79994464  NM_001098816      TENM4
7   chr13   88030147       88458694     NM_015567    SLITRK5
8   chr13   88030147       88458694     NR_033829  MIR4500HG
9   chr13   88030147       88458694     NR_039722    MIR4500
10  chr13   88030147       88458694     NR_104059  LINC00397
11   chr6  162760385      162892300     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  104207181      104322776  NM_001008218         AMY1B
2    chr1  104207181      104322776  NM_001008219         AMY1C
4    chr1  104207181      104322776  NM_001008221         AMY1A
8   chr11   89109723       89544849  NM_001143837          NOX4
9   chr11   89109723       89544849  NM_001271942        TRIM77
14  chr11   89109723       89544849     NM_020358        TRIM49
15  chr11   89109723       89544849     NM_153696        FOLH1B
17  chr15   87207046       87384627     NM_152336         AGBL1
18  chr16   29553765       30131666     NM_000034         ALDOA
19  chr16   29553765       30131666  NM_001030288           SPN
20  chr16   29553765       30131666  NM_001040056         MAPK3
21  chr16   29553765       30131666  NM_001083613       TMEM219
22  chr16   29553765       30131666  NM_001109659      C16orf92
24  chr16   29553765       30131666  NM_001114099        SEZ6L2
26  chr16   29553765       30131666  NM_001145524         YPEL3
28  chr16   29553765       30131666  NM_001256269         KIF22
30  chr16   29553765       30131666  NM_001256443         PRRT2
31  chr16   29553765       30131666  NM_001276275           MAZ
32  chr16   29553765       30131666  NM_001282062         DOC2A
35  chr16   29553765       30131666  NM_001286585         CDIPT
36  chr16   29553765       30131666  NM_001293204           MVP
37  chr16   29553765       30131666  NM_001303507         PPP4C
38  chr16   29553765       30131666  NM_001304562        INO80E
39  chr16   29553765       30131666  NM_001318249          QPRT
40  chr16   29553765       30131666  NM_001318504        FAM57B
44  chr16   29553765       30131666     NM_003609        HIRIP3
45  chr16   29553765       30131666     NM_004608          TBX6
46  chr16   29553765       30131666     NM_004783         TAOK2
49  chr16   29553765       30131666     NM_024307         GDPD3
50  chr16   29553765       30131666     NM_024516         PAGR1
53  chr16   29553765       30131666     NM_152338          ZG16
54  chr16   29553765       30131666     NM_175900      C16orf54
55  chr16   29553765       30131666     NM_178863        KCTD13
56  chr16   29553765       30131666     NM_181718        ASPHD1
58  chr16   29553765       30131666     NR_015396     CDIPT-AS1
60  chr16   29553765       30131666     NR_049833     MIR3680-2
62  chr16   29553765       30131666     NR_135192  LOC101928595
63  chr16   29553765       30131666     NR_135305        SMG1P2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18531909       19409364  NM_001004060         NOMO2
1   chr16   18531909       19409364     NM_001019        RPS15A
2   chr16   18531909       19409364  NM_001160364          TMC7
3   chr16   18531909       19409364  NM_001190983          COQ7
4   chr16   18531909       19409364  NM_001256720       CLEC19A
6   chr16   18531909       19409364  NM_001308157         SYT17
7   chr16   18531909       19409364  NM_001313858       ARL6IP1
10  chr16   18531909       19409364     NM_015092          SMG1
14  chr16   18531909       19409364     NR_003569       ABCC6P1
15  chr16   18531909       19409364     NR_028028      ITPRIPL2
16  chr16   18531909       19409364     NR_119379  LOC102723385,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   16562100       16671376     NM_018994        FBXO42
1    chr1   16562100       16671376     NM_030907          RSG1
2   chr22   20127190       20306600  NM_001243537       CCDC188
3   chr22   20127190       20306600     NM_013373        ZDHHC8
4   chr22   20127190       20306600     NM_023004         RTN4R
5   chr22   20127190       20306600     NM_033257        DGCR6L
6   chr22   20127190       20306600     NR_026919     LINC00896
7   chr22   20127190       20306600     NR_031618       MIR1286
8   chr22   20127190       20306600     NR_038460     LOC284865
9    chr3    4225911        4417309  NM_001164675         SUMF1
10   chr3    4225911        4417309  NM_001243723        SETMAR
12   chr3  111624815      113182501  NM_001008273        TAGLN3
13   chr3  111624815      113182501  NM_001085357          BTLA
14   chr3  111624815      113182501  NM_001134437        PHLDB2
16   chr3  111624815      113182501  NM_001164496        CFAP44
17   chr3  111624815      113182501  NM_001171747       C3orf52
18   chr3  111624815      113182501  NM_001199215      CD200R1L
19   chr3  111624815      113182501  NM_001272069        ABHD10
20   chr3  111624815      113182501  NM_001301861           BOC
22   chr3  111624815      113182501  NM_001318828         CD200
23   chr3  111624815      113182501  NM_001319111         NEPRO
24   chr3  111624815      113182501  NM_001320531        SLC9C1
25   chr3  111624815      113182501  NM_001331079        SPICE1
27   chr3  111624815      113182501     NM_014170        GTPBP8
29   chr3  111624815      113182501     NM_017945       SLC35A5
31   chr3  111624815      113182501     NM_022488          ATG3
34   chr3  111624815      113182501     NM_138806       CD200R1
38   chr3  111624815      113182501     NM_152785         GCSAM
39   chr3  111624815      113182501     NM_199511        CCDC80
40   chr3  111624815      113182501     NR_026734       TMPRSS7
41   chr3  111624815      113182501     NR_030292        MIR567
42   chr3  111624815      113182501     NR_046728    CFAP44-AS1
43   chr3  111624815      113182501     NR_107043       MIR8076
44   chr3  111624815      113182501     NR_109779     LINC01279
45   chr3  111624815      113182501     NR_110017  LOC101929694
46   chr3  111624815      113182501     NR_110823  LOC101929717
47   chr7   64028643       64211541  NM_001282360        ZNF107
48   chr7   64028643       64211541     NR_033245     LOC641746
49   chr7   64028643       64211541     NR_077227  LOC100128885
51   chr7   64028643       64211541     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12665573       13050562  NM_001009611    PRAMEF4
1    chr1   12665573       13050562  NM_001010889    PRAMEF6
2    chr1   12665573       13050562  NM_001010890    PRAMEF9
3    chr1   12665573       13050562  NM_001012276    PRAMEF8
4    chr1   12665573       13050562  NM_001013630    AADACL4
5    chr1   12665573       13050562  NM_001013631   HNRNPCL1
6    chr1   12665573       13050562  NM_001080830   PRAMEF12
7    chr1   12665573       13050562  NM_001099850   PRAMEF18
8    chr1   12665573       13050562  NM_001100631   PRAMEF22
9    chr1   12665573       13050562  NM_001103170    AADACL3
10   chr1   12665573       13050562  NM_001146181   HNRNPCL3
11   chr1   12665573       13050562  NM_001146344   PRAMEF11
12   chr1   12665573       13050562  NM_001294139    PRAMEF1
13   chr1   12665573       13050562  NM_001302551   HNRNPCL4
14   chr1   12665573       13050562  NM_001319225      DHRS3
17   chr1   12665573       13050562     NM_023014    PRAMEF2
18   chr1   12665573       13050562     NM_152290   C1orf158
19  chr16   68601243       68886510  NM_001305204      ZFP90
20  chr16   68601243       68886510  NM_001317184       CDH1
21  chr16   68601243       68886510  NM_001317195       CDH3
22  chr16   68601243       68886510     NM_024562     TANGO6
23  chr16   68601243       68886510     NR_106988  MIR7641-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  132023486      132188849  NM_001048209           NTM
3   chr11  132023486      132188849     NR_046820        NTM-IT
4    chr2   51285040       52269427     NR_135237     LOC730100
5   chr20   41028701       41198158     NM_133170         PTPRT
6    chr9   72276657       72967270  NM_001010940      C9orf135
7    chr9   72276657       72967270  NM_001099666         PTAR1
8    chr9   72276657       72967270     NM_001163         APBA1
9    chr9   72276657       72967270     NM_015110          SMC5
10   chr9   72276657       72967270     NM_153267        MAMDC2
11   chr9   72276657       72967270     NR_038833  C9orf135-AS1
12   chr9   72276657       72967270     NR_039990      SMC5-AS1
13   chr9   72276657       72967270     NR_040076    MAMDC2-AS1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   25508871       25656092  NM_001256304      DTNB
2  chr2   25508871       25656092  NM_001320892    DNMT3A
8  chr2   25508871       25656092     NR_031570   MIR1301,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr13   63116638       63447906     NR_047029    LINC00448
3  chr14   47832091       47944702  NM_001113498        MDGA2
4  chr20   14665590       15050814     NM_080676      MACROD2
5  chr20   14665590       15050814     NR_037841  MACROD2-AS1
7   chr7  108465752      108704317  NM_001024607      C7orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48279566       49485646  NM_001004702         OR4C3
1   chr11   48279566       49485646  NM_001004725         OR4S1
2   chr11   48279566       49485646  NM_001004726         OR4X1
3   chr11   48279566       49485646  NM_001005512        OR4A47
4   chr11   48279566       49485646  NM_001005513        OR4C45
5   chr11   48279566       49485646  NM_001193472         FOLH1
6   chr11   48279566       49485646  NM_001206626       TRIM49B
7   chr11   48279566       49485646  NM_001206631       TRIM64C
8   chr15   28669279       28772465     NR_033351       GOLGA8F
9   chr15   28669279       28772465     NR_033353       GOLGA8G
10  chr15   28669279       28772465     NR_039734     MIR4509-3
12   chr2  242439776      242843807  NM_001164356         THAP4
13   chr2  242439776      242843807  NM_001165031         DTYMK
14   chr2  242439776      242843807  NM_001167601          NEU4
16   chr2  242439776      242843807  NM_001271978         STK25
19   chr2  242439776      242843807  NM_001287249        D2HGDH
20   chr2  242439776      242843807  NM_001330161          ING5
22   chr2  242439776      242843807     NM_005018         PDCD1
24   chr2  242439776      242843807     NM_022134       GAL3ST2
26   chr2  242439776      242843807     NM_032515           BOK
27   chr2  242439776      242843807     NM_173821          RTP5
28   chr2  242439776      242843807     NM_178326         ATG4B
29   chr2  242439776      242843807     NR_033346       BOK-AS1
30   chr2  242439776      242843807     NR_110220     LINC01237
31   chr2  242439776      242843807     NR_135766     LOC285095
34  chr21   13428614       14606035     NR_026916    ANKRD30BP2
35   chr5   96649585       97070826     NR_105028     LINC01340
36   chr9   67222974       67476223     NR_002817        AQP7P1
37   chr9   67222974       67476223     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr15   28731470       28899365  NR_033351       GOLGA8F
1  chr15   28731470       28899365  NR_033353       GOLGA8G
2  chr15   28731470       28899365  NR_039734     MIR4509-3
3  chr20    5130663        5234946  NM_003818          CDS2
4   chr5  124883262      125029870  NR_109887  LOC101927460,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr3    3847295        4156684  NM_001324189      LRRN1
1   chr4   69224459       69720014     NM_001075    UGT2B10
2   chr4   69224459       69720014     NM_001076    UGT2B15
3   chr4   69224459       69720014     NM_001077    UGT2B17
4   chr4   69224459       69720014     NM_014058  TMPRSS11E
5   chr7  110524653      110698553  NM_001244606     IMMP2L
7   chr8      73240         431399  NM_001005504     OR4F21
8   chr8      73240         431399  NM_001042415     ZNF596
13  chr8      73240         431399     NM_012173     FBXO25
14  chr8      73240         431399     NR_003572  RPL23AP53
15  chr8      73240         431399     NR_103537     FAM87A,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   21137273       21295237     NR_040094  LINC01193
1  chr15   21137273       21295237     NR_049895  MIR5701-2
2   chr4  121690911      121819092     NM_018699      PRDM5
3   chr5  109618114      109847333  NM_001039763    TMEM232,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  108428654      108617272     NM_006113       VAV3
1    chr1  108428654      108617272     NR_046653   VAV3-AS1
2    chr1  108428654      108617272     NR_107006    MIR7852
3   chr11   86739125       86976042  NM_001168724    TMEM135
4   chr15   28639843       28771844     NR_033351    GOLGA8F
5   chr15   28639843       28771844     NR_033353    GOLGA8G
6   chr15   28639843       28771844     NR_039734  MIR4509-3
8    chr3  148138651      148478135     NM_009585      AGTR1
10   chr7  110673887      110823703  NM_001099658      LRRN3
11   chr7  110673887      110823703  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30299828       30430798  NM_001282472       GOLGA8J
1   chr15   30299828       30430798     NR_026859        ULK4P3
2   chr15   30299828       30430798     NR_033933       GOLGA8T
3   chr16   21527620       21701593  NM_001077180        METTL9
4   chr16   21527620       21701593  NM_001161683          OTOA
6   chr16   21527620       21701593     NM_005849         IGSF6
8   chr16   21527620       21701593     NR_002594      SLC7A5P2
9   chr16   21527620       21701593     NR_110930  LOC101927814
10   chr3  162856882      163651070     NR_033945     LINC01192
11   chr7  110643266      110897277  NM_001099658         LRRN3
12   chr7  110643266      110897277  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67258829       67367912     NM_000852         GSTP1
1   chr11   67258829       67367912  NM_001318496         CABP2
2   chr11   67258829       67367912     NM_004910       PITPNM1
3   chr11   67258829       67367912     NM_005851       CDK2AP2
5   chr20    8561041       10140040     NM_000933         PLCB4
7   chr20    8561041       10140040  NM_001303472        ANKEF1
8   chr20    8561041       10140040     NM_012261         LAMP5
9   chr20    8561041       10140040     NM_015192         PLCB1
10  chr20    8561041       10140040     NM_177990          PAK5
12  chr20    8561041       10140040     NR_040710    SNAP25-AS1
13  chr20    8561041       10140040     NR_109861  LOC101929371
14  chr20    8561041       10140040     NR_109957     LAMP5-AS1
15   chr5   17766832       17893822     NR_134286     LOC646241
17   chr7  110608915      111180209  NM_001099658         LRRN3
18   chr7  110608915      111180209  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   77796197       77977953  NM_001301186        LINGO1
10  chr15   77796197       77977953     NR_045123    LINGO1-AS1
11  chr15   77796197       77977953     NR_120361    LINGO1-AS2
12  chr15   77796197       77977953     NR_135692  LOC101929457
13  chr16   21832252       21988907  NM_001310148        NPIPB4
14  chr16   21832252       21988907     NM_003366        UQCRC2
15   chr2  110160808      110297832  NM_001099289        SH3RF3
16  chr20   14521244       14636839     NM_080676       MACROD2
17  chr20   14521244       14636839     NR_104193   MACROD2-IT1
18  chr21   28129580       28256568     NM_006988       ADAMTS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   42061747       42303379  NM_001346175         LRFN5
1   chr2   51335474       51490052     NR_135237     LOC730100
2  chr20   10843907       11157916     NR_109866  LOC101929413
3  chr21   23464230       23679352     NR_038400     LINC00308
4  chr21   23464230       23679352     NR_109959  LOC101927843
5   chr4   93213014       93390595     NM_001510         GRID2
6   chr5    3573608        3719074     NM_024337          IRX1
7   chr6   45075160       45211197  NM_001261823        SUPT3H
8   chr6   45075160       45211197     NR_030313        MIR586,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   29481367       29696554  NM_001030288           SPN
1   chr16   29481367       29696554  NM_001318249          QPRT
3   chr16   29481367       29696554     NR_049833     MIR3680-2
4   chr16   29481367       29696554     NR_135305        SMG1P2
6   chr16   69983632       70214524  NM_001136214       CLEC18A
8   chr16   69983632       70214524     NM_017990          PDPR
9   chr16   69983632       70214524     NM_173619       CLEC18C
11  chr16   69983632       70214524     NR_003610       PDXDC2P
12  chr16   69983632       70214524     NR_036265     MIR1972-2
13  chr16   69983632       70214524     NR_126007     LOC400541
14  chr18   14677891       14956016  NM_001145029      ANKRD30B
15  chr18   14677891       14956016     NR_036153     MIR3156-2
16  chr18   14677891       14956016     NR_104164     LINC01443
17   chr3   72676948       72927684     NM_018130          SHQ1
18   chr3   72676948       72927684     NR_135531  LOC105377162
19   chr4     124447         267632  NM_001039127        ZNF718
20   chr4     124447         267632  NM_001137608        ZNF732
23   chr4     124447         267632     NR_027481       ZNF876P
26   chr4  184422845      184554662  NM_001291959          ING2
28   chr4  184422845      184554662     NR_033995     LOC389247,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    6707459        6820911  NM_001004489        OR2AG1
1   chr11    6707459        6820911  NM_001004490        OR2AG2
2   chr11    6707459        6820911     NM_003696         OR6A2
3   chr11    6707459        6820911     NR_003945        GVINP1
4   chr12   27158498       27656354  NM_001080406      C12orf71
5   chr12   27158498       27656354  NM_001145010         SMCO2
6   chr12   27158498       27656354  NM_001248002        ARNTL2
7   chr12   27158498       27656354  NM_001271811         MED21
8   chr12   27158498       27656354     NM_015000        STK38L
9   chr12   27158498       27656354     NM_016551        TM7SF3
10  chr12   27158498       27656354     NR_109975    ARNTL2-AS1
11   chr2  202113376      204591512  NM_001044385       TMEM237
12   chr2  202113376      204591512  NM_001104586          CARF
13   chr2  202113376      204591512  NM_001114132        NBEAL1
14   chr2  202113376      204591512  NM_001135745          ALS2
15   chr2  202113376      204591512  NM_001168216      ALS2CR11
17   chr2  202113376      204591512     NM_001204         BMPR2
18   chr2  202113376      204591512  NM_001206864        STRADB
19   chr2  202113376      204591512  NM_001261435         CDK15
21   chr2  202113376      204591512  NM_001277372      KIAA2012
22   chr2  202113376      204591512  NM_001282926          ABI2
24   chr2  202113376      204591512  NM_001288622         ICA1L
29   chr2  202113376      204591512  NM_001329728         RAPH1
30   chr2  202113376      204591512     NM_003352         SUMO1
31   chr2  202113376      204591512     NM_003507          FZD7
32   chr2  202113376      204591512     NM_006139          CD28
33   chr2  202113376      204591512     NM_015049         TRAK2
34   chr2  202113376      204591512     NM_015934         NOP58
35   chr2  202113376      204591512     NM_018256         WDR12
37   chr2  202113376      204591512     NM_033066          MPP4
38   chr2  202113376      204591512     NM_033355         CASP8
43   chr2  202113376      204591512     NM_173511       FAM117B
44   chr2  202113376      204591512     NM_177538       CYP20A1
47   chr2  202113376      204591512     NR_003031       SNORD11
48   chr2  202113376      204591512     NR_003058       SNORD70
49   chr2  202113376      204591512     NR_003694      SNORD11B
50   chr2  202113376      204591512     NR_110620      ALS2CR12
52   chr2  202113376      204591512     NR_135243     LOC729224
55   chr2  242489884      242926381  NM_001164356         THAP4
56   chr2  242489884      242926381  NM_001165031         DTYMK
57   chr2  242489884      242926381  NM_001167601          NEU4
59   chr2  242489884      242926381  NM_001287249        D2HGDH
60   chr2  242489884      242926381  NM_001330161          ING5
62   chr2  242489884      242926381     NM_005018         PDCD1
64   chr2  242489884      242926381     NM_022134       GAL3ST2
66   chr2  242489884      242926381     NM_032515           BOK
67   chr2  242489884      242926381     NM_173821          RTP5
68   chr2  242489884      242926381     NM_178326         ATG4B
69   chr2  242489884      242926381     NR_033346       BOK-AS1
70   chr2  242489884      242926381     NR_110220     LINC01237
71   chr2  242489884      242926381     NR_110592  LOC102723927
72   chr2  242489884      242926381     NR_135766     LOC285095
75   chr7  110752038      110893673  NM_001099658         LRRN3
76   chr7  110752038      110893673  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12803550       12950158  NM_001009611    PRAMEF4
1    chr1   12803550       12950158  NM_001013631   HNRNPCL1
2    chr1   12803550       12950158  NM_001080830   PRAMEF12
3    chr1   12803550       12950158  NM_001146181   HNRNPCL3
4    chr1   12803550       12950158  NM_001146344   PRAMEF11
5    chr1   12803550       12950158  NM_001294139    PRAMEF1
6    chr1   12803550       12950158  NM_001302551   HNRNPCL4
8    chr1   12803550       12950158     NM_023014    PRAMEF2
9    chr1   12803550       12950158     NM_152290   C1orf158
10  chr19   23476327       23623726  NM_001300951      ZNF91
11  chr19   23476327       23623726     NR_126448  LINC01224
12   chr7   53301990       54596521     NR_004422      HPVC1
13   chr7   53301990       54596521     NR_038371  LINC01446
14   chr7   53301990       54596521     NR_120515  LINC01445
15   chr7   64103152       64244193  NM_001282360     ZNF107
17   chr7   64103152       64244193     NR_106898    MIR6839
18   chr9  119728172      119857230     NM_014010      ASTN2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  244995259      245534153  NM_001143943        EFCAB2
2   chr1  244995259      245534153  NM_001312871         COX20
4   chr1  244995259      245534153     NM_004501        HNRNPU
5   chr1  244995259      245534153     NM_018012        KIF26B
8   chr1  244995259      245534153     NR_111907  LOC101928068
9   chr1  244995259      245534153     NR_132782      SNORA100
10  chr4   68962455       69102840     NM_182502     TMPRSS11B
11  chr4   68962455       69102840     NM_207407     TMPRSS11F
12  chr4   68962455       69102840     NR_015446        FTLP10
13  chr4   68962455       69102840     NR_104048   TMPRSS11BNL
14  chr9   41494362       42510699  NM_001012419     ANKRD20A3
15  chr9   41494362       42510699  NM_001012421     ANKRD20A2
16  chr9   41494362       42510699  NM_001113541     SPATA31A5
17  chr9   41494362       42510699     NM_015667     SPATA31A7
18  chr9   41494362       42510699     NR_003528       ZNF658B
19  chr9   41494362       42510699     NR_003670        FGF7P3
20  chr9   41494362       42510699     NR_015363         GLIDR
21  chr9   41494362       42510699     NR_026803       FAM74A1
22  chr9   41494362       42510699     NR_121572      GXYLT1P3
25  chr9   41494362       42510699     NR_126048  LOC102724238
26  chr9   41494362       42510699     NR_126049     LOC554249
27  chr9   41494362       42510699     NR_136310  LOC105379252,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr15   28574826       28698932  NR_033351       GOLGA8F
1  chr15   28574826       28698932  NR_033353       GOLGA8G
2  chr15   28574826       28698932  NR_039734     MIR4509-3
3  chr20   10832184       10947556  NR_109866  LOC101929413
4   chr9   41813411       41969909  NR_003670        FGF7P3
5   chr9   41813411       41969909  NR_015363         GLIDR
8   chr9  119701772      119934167  NM_014010         ASTN2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   88966714       89088394  NM_001099338        NUTM2A
1   chr10   88966714       89088394     NR_024397    NUTM2A-AS1
2   chr16   16516603       17864916     NM_022166         XYLT1
3   chr16   16516603       17864916     NR_135179  LOC102723692
4   chr16   88424775       88525048  NM_001127464        ZNF469
5   chr16   88424775       88525048     NM_153813         ZFPM1
6    chr4   69208229       69326245  NM_001031732        YTHDC1
7    chr4   69208229       69326245     NM_014058     TMPRSS11E
8    chr7  110575622      110694070  NM_001244606        IMMP2L
10   chr8   58181686       58458983     NR_026772     LINC00588
11   chr8   58181686       58458983     NR_125818  LOC101929488
12   chr9  102044007      102928215  NM_001318381          INVS
13   chr9  102044007      102928215     NM_015051         ERP44
14   chr9  102044007      102928215     NM_017919         STX17
15   chr9  102044007      102928215     NM_173199         NR4A3
17   chr9  102044007      102928215     NR_038853     STX17-AS1
18   chr9  102044007      102928215     NR_102270          NAMA
19   chr9  102044007      102928215     NR_109802  LOC101928438,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   81035006       81873099     NR_036186       MIR4300
1   chr11   81035006       81873099     NR_120571     MIR4300HG
2    chr2  129501140      131347534  NM_001079530         CFC1B
3    chr2  129501140      131347534  NM_001099771         POTEF
4    chr2  129501140      131347534  NM_001142370        PTPN18
5    chr2  129501140      131347534  NM_001258307       CCDC74B
6    chr2  129501140      131347534  NM_001277406         POTEI
7    chr2  129501140      131347534  NM_001320304          IMP4
8    chr2  129501140      131347534  NM_001321118       CCDC115
10   chr2  129501140      131347534  NM_001330282         MZT2B
11   chr2  129501140      131347534     NM_017951         SMPD4
12   chr2  129501140      131347534     NM_032144         RAB6C
14   chr2  129501140      131347534     NM_207312        TUBA3E
15   chr2  129501140      131347534     NR_026740     LOC389033
16   chr2  129501140      131347534     NR_026758        FAR2P1
17   chr2  129501140      131347534     NR_027313        TISP43
22   chr2  129501140      131347534     NR_033903       MED15P9
23   chr2  129501140      131347534     NR_033930     LOC646743
25   chr2  129501140      131347534     NR_036537     RAB6C-AS1
26   chr2  129501140      131347534     NR_046260        FAR2P2
27   chr2  129501140      131347534     NR_103761      CYP4F62P
28   chr2  129501140      131347534     NR_110278  LOC101927881
29   chr2  129501140      131347534     NR_110285  LOC101927924
30   chr2  129501140      131347534     NR_122040     LOC151121
31   chr2  133648998      133762794     NM_207363        NCKAP5
32   chr2  133648998      133762794     NR_135572  LOC101928185
33   chr4    9006464        9222918  NM_001256852      USP17L10
34   chr4    9006464        9222918  NM_001256853      USP17L12
35   chr4    9006464        9222918  NM_001256854      USP17L11,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr16   15056302       15172669  NM_001270767     NTAN1
1   chr16   15056302       15172669  NM_001285445    PDXDC1
6   chr16   15056302       15172669  NM_001301064      RRN3
8   chr18     593820         787527  NM_001012716    TYMSOS
9   chr18     593820         787527     NM_001071      TYMS
10  chr18     593820         787527  NM_001126123    ENOSF1
11  chr18     593820         787527  NM_001289036     CLUL1
15  chr18     593820         787527     NM_005433      YES1
18  chr18   25046679       26423076  NM_001308176      CDH2
20   chr3  105291767      105545129  NM_001321786      CBLB
25   chr3  105291767      105545129     NM_001627     ALCAM
27   chr4   71346067       71476698  NM_001145006      MUC7
29   chr4   71346067       71476698  NM_001286731      AMTN
30   chr4   71346067       71476698     NM_016519      AMBN
32   chr7    8588006        8693625     NM_152745     NXPH1
33   chr7  146525661      146758031     NM_014141   CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27661312       27817906  NM_001034842        PTCHD3
1   chr10   27661312       27817906  NM_001256411         RAB18
2   chr22   20131028       20377379  NM_001243537       CCDC188
3   chr22   20131028       20377379     NM_013373        ZDHHC8
4   chr22   20131028       20377379     NM_023004         RTN4R
5   chr22   20131028       20377379     NM_033257        DGCR6L
6   chr22   20131028       20377379     NR_026919     LINC00896
7   chr22   20131028       20377379     NR_031618       MIR1286
8   chr22   20131028       20377379     NR_038460     LOC284865
9   chr22   20131028       20377379     NR_136560       FAM230A
10  chr22   20131028       20377379     NR_136572  LOC101927859
11   chr7  117506289      117907487     NM_016200          LSM8
12   chr7  117506289      117907487     NM_019644        ANKRD7
13   chr7  117506289      117907487     NM_033427       CTTNBP2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88984075       89318534  NM_001099338      NUTM2A
1   chr10   88984075       89318534  NM_001178118      MINPP1
3   chr10   88984075       89318534     NR_024397  NUTM2A-AS1
4   chr10   88984075       89318534     NR_029408   LINC00863
5   chr10   88984075       89318534     NR_039825     MIR4678
6   chr10   88984075       89318534     NR_046091   LINC00864
7   chr10   88984075       89318534     NR_075100      NUTM2D
9   chr17   21285482       21440178  NM_001113434    C17orf51
10  chr17   21285482       21440178  NM_001194958      KCNJ18
11  chr17   21285482       21440178     NM_021012      KCNJ12
12   chr7  110715317      110819946  NM_001099658       LRRN3
13   chr7  110715317      110819946  NM_001244606      IMMP2L,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr9   30385549       30553528  NR_046204  LINC01242,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   50839251       50940623  NM_001330082     NRXN1
1  chr2   50839251       50940623     NR_130470   MIR8485
2  chr2  110201675      110351962  NM_001099289    SH3RF3
3  chr2  110201675      110351962  NM_001321504    SEPT10
5  chr7  110665325      110999861  NM_001099658     LRRN3
6  chr7  110665325      110999861  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67734278       67835520  NM_001127384     CTNNA3
2    chr2   50938595       51195056  NM_001330079      NRXN1
5    chr4   69228769       69452823     NM_001077    UGT2B17
6    chr4   69228769       69452823     NM_014058  TMPRSS11E
7    chr5   19657645       19791478  NM_001291956      CDH18
10   chr7  157341224      157482240  NM_001308267     PTPRN2
12   chr7  157341224      157482240     NR_029689   MIR153-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27199664       27301430  NM_001080406      C12orf71
1   chr15   28650235       28862072     NR_033351       GOLGA8F
2   chr15   28650235       28862072     NR_033353       GOLGA8G
3   chr15   28650235       28862072     NR_039734     MIR4509-3
5   chr15   30265600       30786161  NM_001282472       GOLGA8J
6   chr15   30265600       30786161  NM_001282484       GOLGA8R
7   chr15   30265600       30786161     NM_139320      CHRFAM7A
8   chr15   30265600       30786161     NR_026771  DKFZP434L187
9   chr15   30265600       30786161     NR_026859        ULK4P3
10  chr15   30265600       30786161     NR_033933       GOLGA8T
11   chr2   34216925       34558500     NR_126403     LINC01317
12   chr2   34216925       34558500     NR_132381     LINC01318
13   chr7  108457741      108708477  NM_001024607       C7orf66,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr4  129596328      129838181  NM_001287437      JADE1
6   chr4  129596328      129838181     NM_144643      SCLT1
7   chr7   64103500       64219594  NM_001282360     ZNF107
9   chr7   64103500       64219594     NR_106898    MIR6839
10  chr8  111864597      112199133     NR_125416  LINC01608
12  chr8  111864597      112199133     NR_125418  LINC01609,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   20759792       20866090  NM_001288713      NELL1
1  chr14   47863896       48272999  NM_001113498      MDGA2
2  chr14   47863896       48272999     NR_037503    MIR548Y
3  chr14   47863896       48272999     NR_039996  LINC00648
4  chr20   40995220       41194029     NM_133170      PTPRT
5   chr3  165313069      165806884     NM_000055       BCHE,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr13   22338999       22577696  NR_047040    LINC00424
1  chr20   14641990       14899459  NM_080676      MACROD2
2  chr20   14641990       14899459  NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21669925       21916588  NM_001161683          OTOA
1   chr16   21669925       21916588  NM_001310148        NPIPB4
4   chr16   21669925       21916588     NR_003370        RRN3P1
5   chr16   76306233       76983974  NM_001322181       CNTNAP4
7   chr16   76306233       76983974     NR_039870       MIR4719
8   chr16   76306233       76983974     NR_110934  LOC101928203
9   chr21   22994872       23498857     NR_038400     LINC00308
10  chr21   22994872       23498857     NR_038872     LINC00317
11  chr21   22994872       23498857     NR_109958     LINC01425
12  chr21   22994872       23498857     NR_109959  LOC101927843,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   48918323       49200726  NM_001286238        SPATA6
1    chr1   48918323       49200726  NM_001302082         BEND5
2    chr1   48918323       49200726  NM_001323575         AGBL4
3   chr14   75148584       75278153  NM_001039479         AREL1
4   chr14   75148584       75278153  NM_001318508          FCF1
6   chr14   75148584       75278153     NM_019589         YLPM1
7   chr17   48096760       48266036     NM_000088        COL1A1
8   chr17   48096760       48266036  NM_001199898          PDK2
11  chr17   48096760       48266036  NM_001257359        SAMD14
12  chr17   48096760       48266036     NM_002204         ITGA3
14  chr17   48096760       48266036     NM_032595       PPP1R9B
15  chr17   48096760       48266036     NR_024193         HILS1
16  chr17   48096760       48266036     NR_038230     LOC284080
17  chr17   48096760       48266036     NR_135553          SGCA
18   chr2   63233435       65081325  NM_001001521          UGP2
19   chr2   63233435       65081325  NM_001002243         AFTPH
20   chr2   63233435       65081325  NM_001042692         WDPCP
21   chr2   63233435       65081325  NM_001142614         EHBP1
23   chr2   63233435       65081325  NM_001199112          MDH1
24   chr2   63233435       65081325  NM_001199770          OTX1
27   chr2   63233435       65081325     NM_014181        LGALSL
28   chr2   63233435       65081325     NM_014755       SERTAD2
31   chr2   63233435       65081325     NM_016516         VPS54
32   chr2   63233435       65081325     NM_020651         PELI1
33   chr2   63233435       65081325     NR_027069  LOC100132215
35   chr2   63233435       65081325     NR_033837     LINC00309
36   chr2   63233435       65081325     NR_034023     LOC339807
37   chr2   63233435       65081325     NR_036635       DBIL5P2
38   chr2   63233435       65081325     NR_039632      MIR4433A
39   chr2   63233435       65081325     NR_039633       MIR4434
40   chr2   63233435       65081325     NR_106995      MIR4433B
41   chr2   63233435       65081325     NR_110224  LOC101927438
42   chr2   63233435       65081325     NR_120420  LOC100507006
44   chr2   63233435       65081325     NR_136167  LOC101927402
45  chr21   17868271       18534712     NR_027790      MIR99AHG
47  chr21   17868271       18534712     NR_029480      MIRLET7C
48  chr21   17868271       18534712     NR_029514        MIR99A
49  chr21   17868271       18534712     NR_029694      MIR125B2
58   chr4  169271777      169422120  NM_001012967        DDX60L
59   chr4  169271777      169422120  NM_001166108         PALLD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12804304       13273981  NM_001009611       PRAMEF4
1    chr1   12804304       13273981  NM_001010889       PRAMEF6
2    chr1   12804304       13273981  NM_001010890       PRAMEF9
3    chr1   12804304       13273981  NM_001012276       PRAMEF8
4    chr1   12804304       13273981  NM_001013407       PRAMEF5
5    chr1   12804304       13273981  NM_001013631      HNRNPCL1
6    chr1   12804304       13273981  NM_001080830      PRAMEF12
7    chr1   12804304       13273981  NM_001099850      PRAMEF18
8    chr1   12804304       13273981  NM_001100631      PRAMEF22
9    chr1   12804304       13273981  NM_001136561      HNRNPCL2
10   chr1   12804304       13273981  NM_001146181      HNRNPCL3
11   chr1   12804304       13273981  NM_001146344      PRAMEF11
12   chr1   12804304       13273981  NM_001294139       PRAMEF1
13   chr1   12804304       13273981  NM_001302551      HNRNPCL4
14   chr1   12804304       13273981  NM_001306072      PRAMEF26
15   chr1   12804304       13273981  NM_001310134      PRAMEF25
17   chr1   12804304       13273981     NM_023014       PRAMEF2
18   chr1   12804304       13273981     NM_152290      C1orf158
19   chr1   12804304       13273981     NR_111945     PRAMEF36P
21   chr1  145263139      145433495  NM_001277444         NBPF9
22   chr1  145263139      145433495  NM_001278267        NBPF20
23   chr1  145263139      145433495  NM_001302371        NBPF10
24   chr1  145263139      145433495     NM_145277          HFE2
25   chr1  145263139      145433495     NM_203458      NOTCH2NL
26   chr1  145263139      145433495     NR_104217       NBPF25P
27   chr1  145263139      145433495     NR_125967  LOC101928979
28   chr1  185872271      186017400     NM_031935         HMCN1
29  chr11    6712949        6847097  NM_001004489        OR2AG1
30  chr11    6712949        6847097  NM_001004490        OR2AG2
31  chr11    6712949        6847097     NM_003696         OR6A2
32  chr11    6712949        6847097     NR_003945        GVINP1
33  chr16   68628133       68823431  NM_001317184          CDH1
34  chr16   68628133       68823431  NM_001317195          CDH3
35  chr16   68628133       68823431     NR_106988     MIR7641-2
36   chr2   51703526       51923142     NR_135237     LOC730100
37   chr2   97282362       97779922  NM_001115016        KANSL3
38   chr2   97282362       97779922  NM_001122646       FAM178B
39   chr2   97282362       97779922  NM_001164315       ANKRD36
41   chr2   97282362       97779922  NM_001293083        FER1L5
42   chr2   97282362       97779922  NM_001320849        FAHD2B
43   chr2   97282362       97779922  NM_001322354        LMAN2L
44   chr2   97282362       97779922     NM_016466       ANKRD39
46   chr2   97282362       97779922     NM_017623         CNNM3
47   chr2   97282362       97779922     NM_017789        SEMA4C
48   chr2   97282362       97779922     NM_020184         CNNM4
50   chr2   97282362       97779922     NM_144994       ANKRD23
52   chr2   97282362       97779922     NR_036074       MIR3127
54   chr2   97282362       97779922     NR_110209  LOC101927053
55   chr5   22771591       22928185     NM_004061         CDH12
56   chr6  162774160      163472870  NM_001080378         PACRG
58   chr6  162774160      163472870     NM_013988         PARK2
59   chr6  162774160      163472870     NR_110871     PACRG-AS2
61   chr7   75718256       75869639  NM_001110199         SRRM3
62   chr7   75718256       75869639     NR_135079       GTF2IP7
63   chr7  110516958      111181879  NM_001099658         LRRN3
64   chr7  110516958      111181879  NM_001244606        IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  102428362      102532055     NR_110211     OLFM3
1  chr7    6825385        6928895  NM_001099697  RSPH10B2
2  chr7    6825385        6928895     NM_198097     CCZ1B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   60278987       60451870  NM_001278320        MS4A13
1   chr11   60278987       60451870     NR_026946     LINC00301
2   chr12   29135892       29733299  NM_001193451         TMTC1
3   chr12   29135892       29733299  NM_001271783          FAR2
5   chr12   29135892       29733299     NM_016570        ERGIC2
7   chr12   29135892       29733299     NM_183378         OVCH1
8   chr12   29135892       29733299     NR_073171     OVCH1-AS1
10  chr12   29135892       29733299     NR_103860  LOC100506606
11  chr18   35047571       36895461     NM_020180         CELF4
12  chr18   35047571       36895461     NR_024391      MIR924HG
13  chr18   35047571       36895461     NR_036202       MIR4318
14   chr3   60054065       60165750  NM_001320899          FHIT
16   chr3  192344557      192458635     NM_004113         FGF12
17   chr4   94162630       94399374     NM_001510         GRID2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14773400       15387893  NM_001033087      MACROD2
2  chr20   14773400       15387893     NR_037841  MACROD2-AS1
4   chr4   69312761       69423617     NM_001077      UGT2B17
5   chr4   69312761       69423617     NM_014058    TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12852274       13179905  NM_001009611    PRAMEF4
1    chr1   12852274       13179905  NM_001010889    PRAMEF6
2    chr1   12852274       13179905  NM_001010890    PRAMEF9
3    chr1   12852274       13179905  NM_001012276    PRAMEF8
4    chr1   12852274       13179905  NM_001013407    PRAMEF5
5    chr1   12852274       13179905  NM_001013631   HNRNPCL1
6    chr1   12852274       13179905  NM_001099850   PRAMEF18
7    chr1   12852274       13179905  NM_001100631   PRAMEF22
8    chr1   12852274       13179905  NM_001146181   HNRNPCL3
9    chr1   12852274       13179905  NM_001146344   PRAMEF11
10   chr1   12852274       13179905  NM_001294139    PRAMEF1
11   chr1   12852274       13179905  NM_001302551   HNRNPCL4
12   chr1   12852274       13179905  NM_001306072   PRAMEF26
13   chr1   12852274       13179905  NM_001310134   PRAMEF25
15   chr1   12852274       13179905     NM_023014    PRAMEF2
16   chr1   12852274       13179905     NR_111945  PRAMEF36P
17  chr11   79088241       79322984  NM_001098816      TENM4
18  chr11   79088241       79322984     NR_030598     MIR708
19  chr11   79088241       79322984     NR_049841    MIR5579
20   chr4   94146681       94251310     NM_001510      GRID2
21   chr9     147739         460426  NM_001145355      CBWD1
22   chr9     147739         460426  NM_001190458      DOCK8
23   chr9     147739         460426     NM_152569    C9orf66,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   80833320       80994917  NM_001318536      SPRY2
3   chr3    7072276        7484018     NM_181874       GRM7
4   chr4   69143263       69248057  NM_001031732     YTHDC1
5   chr4   69315752       69518267     NM_001076    UGT2B15
6   chr4   69315752       69518267     NM_001077    UGT2B17
7   chr4   69315752       69518267     NM_014058  TMPRSS11E,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   54536040       54683041  NM_001080534    UNC13C,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   38926316       39030989     NR_045000      ACTR3BP5
1   chr12   85499564       85617936  NM_001079910        LRRIQ1
2   chr14   67444405       67622970     NM_020806          GPHN
3   chr15   85788853       86324845  NM_001270546        AKAP13
4   chr15   85788853       86324845  NM_001310153      GOLGA6L3
6   chr15   85788853       86324845     NM_022480        KLHL25
7   chr15   85788853       86324845     NR_031682       MIR1276
8   chr15   85788853       86324845     NR_106993       MIR7706
9   chr15   85788853       86324845     NR_120366  LOC101929679
10   chr4  182006665      182264110     NR_033918     LINC00290
11   chr5   12409138       12695835     NR_033383     LINC01194
12   chr5   12409138       12695835     NR_039659       MIR4454
13   chr9   28544757       28671745  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   89018015       89274210  NM_001178118      MINPP1
2   chr10   89018015       89274210     NR_024397  NUTM2A-AS1
3   chr10   89018015       89274210     NR_029408   LINC00863
4   chr10   89018015       89274210     NR_039825     MIR4678
5   chr10   89018015       89274210     NR_046091   LINC00864
6   chr10   89018015       89274210     NR_075100      NUTM2D
8   chr11  131431437      131733729  NM_001048209         NTM
9   chr11  131431437      131733729     NR_126159     NTM-AS1
10   chr2  110176279      110333290  NM_001099289      SH3RF3
11   chr2  110176279      110333290  NM_001321504      SEPT10
13   chr9   30230758       30412013     NR_046204   LINC01242, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27129400       27302978  NM_001080406      C12orf71
1   chr12   27129400       27302978  NM_001271811         MED21
2   chr12   27129400       27302978     NM_016551        TM7SF3
3   chr13   63096293       64439402     NR_002171      OR7E156P
4   chr13   63096293       64439402     NR_047011     LINC00395
5   chr13   63096293       64439402     NR_047029     LINC00448
8   chr13   63096293       64439402     NR_126409     LINC00376
9   chr13   63096293       64439402     NR_130763  LOC102723968
10  chr22   20612610       20715933     NR_136569     LOC729461
11  chr22   20612610       20715933     NR_136572  LOC101927859
12   chr7   64067267       64174481  NM_001282360        ZNF107
13   chr7   64067267       64174481     NR_077227  LOC100128885
15   chr7   64067267       64174481     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11  134201190      134303433     NM_054025    B3GAT1
1   chr11  134201190      134303433     NM_138342    GLB1L2
2   chr17   14033341       14161994  NM_001007530    CDRT15
3   chr17   14033341       14161994     NM_001303     COX10
4    chr4   75363640       75551638     NM_001657      AREG
5    chr5  154187785      154306094  NM_001301074     CNOT8
8    chr5  154187785      154306094     NM_015315     LARP1
9    chr5  154187785      154306094     NM_015465    GEMIN5
10   chr5  154187785      154306094     NM_032385    FAXDC2
11   chr5  154187785      154306094     NR_039667   MIR378H,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   25087686       25403626  NM_001009909     LUZP2
1   chr16   18542936       18998941  NM_001004060     NOMO2
2   chr16   18542936       18998941     NM_001019    RPS15A
3   chr16   18542936       18998941  NM_001160364      TMC7
5   chr16   18542936       18998941  NM_001313858   ARL6IP1
7   chr16   18542936       18998941     NM_015092      SMG1
9   chr16   18542936       18998941     NR_003569   ABCC6P1
10   chr7   64081526       64236778  NM_001282360    ZNF107
12   chr7   64081526       64236778     NR_106898   MIR6839
13   chr7   64118894       64232629  NM_001282360    ZNF107
15   chr7   64118894       64232629     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89068714       89243739  NM_001143837          NOX4
6   chr11   89066773       89176081  NM_001143837          NOX4
11  chr16   78802832       78909055     NM_016373          WWOX
12  chr17   63547999       63745534  NM_001037325        CEP112
15  chr17   63547999       63745534     NM_004655         AXIN2
16   chr2   81582707       81688714     NR_110161  LOC100507201
17   chr5     138104         255878  NM_001080478       LRRC14B
18   chr5     138104         255878     NM_004168          SDHA
19   chr5     138104         255878     NM_052909      PLEKHG4B
20   chr5     138104         255878     NM_145265       CCDC127
21   chr7  110574596      110834937  NM_001099658         LRRN3
22   chr7  110574596      110834937  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr17   47886162       47995486  NM_001077503       TAC4
1  chr17   47886162       47995486  NM_001199158       KAT7
2  chr17   47886162       47995486  NM_001242791   FLJ45513
3  chr20   14681996       14855165     NM_080676    MACROD2
4   chr5   12409825       12921038     NR_033383  LINC01194
5   chr5   12409825       12921038     NR_039659    MIR4454
6   chr9   28700870       28811411  NM_001258282     LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  130215801      130360679     NM_133448      TMEM132D
1   chr18   63525856       63861398  NM_001317214          CDH7
4   chr21   13469808       15707144  NM_001302998          LIPI
5   chr21   13469808       15707144  NM_001320602         RBM11
6   chr21   13469808       15707144     NM_174981         POTED
8   chr21   13469808       15707144     NR_003087        ABCC13
10  chr21   13469808       15707144     NR_026755      CYP4F29P
11  chr21   13469808       15707144     NR_026916    ANKRD30BP2
12  chr21   13469808       15707144     NR_027270   ANKRD20A11P
13  chr21   13469808       15707144     NR_036061     MIR3118-1
14  chr21   13469808       15707144     NR_036164     MIR3156-3
15  chr21   13469808       15707144     NR_110544  LOC102724188
16  chr21   13469808       15707144     NR_128718     MIR8069-2
17   chr4  167666999      167953402  NM_001204353        SPOCK3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   42071671       42183315  NM_001346175     LRFN5
1  chr16   14797802       14983170  NM_001277323    NPIPA3
3  chr16   14797802       14983170  NM_001277324    NPIPA2
5  chr16   14797802       14983170     NM_014287     NOMO1
6  chr16   14797802       14983170     NR_023387   ABCC6P2
7   chr9   22399804       22548879     NM_022160    DMRTA1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr4  136808378      137339828     NR_103762     LINC00613
2   chr7    6864853        7120703     NM_198097         CCZ1B
3   chr7    6864853        7120703     NR_034022  LOC100131257
4   chr7    6864853        7120703     NR_037454       MIR3683
5   chr7   64067237       64527019  NM_001007253        ERV3-1
6   chr7   64067237       64527019  NM_001160183        ZNF138
7   chr7   64067237       64527019  NM_001282360        ZNF107
8   chr7   64067237       64527019     NM_015852        ZNF117
9   chr7   64067237       64527019     NM_021148        ZNF273
10  chr7   64067237       64527019     NR_033416        CCT6P3
12  chr7   64067237       64527019     NR_077227  LOC100128885
14  chr7   64067237       64527019     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr13   80772375       80925741  NM_001318536     SPRY2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   82435824       82739509  NM_001297704     ADGRL2
2  chr13   63151951       63253026     NR_047029  LINC00448
3   chr6   83373896       83837065  NM_001199942     DOPEY1
4   chr6   83373896       83837065  NM_001304437      UBE3D,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   19885322       20138684  NM_001145442         POTEM
1   chr14   19885322       20138684     NR_073459       BMS1P18
2   chr14   19885322       20138684     NR_110505  LOC100508046
3   chr14   19885322       20138684     NR_110526       DUXAP10
4   chr14   19885322       20138684     NR_122111     LINC01296
6   chr14   19885322       20138684     NR_133911       BMS1P22
7   chr17    5594448        5810523     NR_040000     LOC339166
8    chr4   69161230       69364035  NM_001031732        YTHDC1
9    chr4   69161230       69364035     NM_014058     TMPRSS11E
10   chr7  133235308      133367450     NM_021807         EXOC4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28620776       28975753  NM_001282468       GOLGA8M
1   chr15   28620776       28975753     NR_033351       GOLGA8F
3   chr15   28620776       28975753     NR_033353       GOLGA8G
5   chr15   28620776       28975753     NR_036443       HERC2P9
6   chr15   28620776       28975753     NR_039734     MIR4509-3
8   chr15   30230722       30495306  NM_001282472       GOLGA8J
9   chr15   30230722       30495306  NM_001301025          TJP1
10  chr15   30230722       30495306     NR_026771  DKFZP434L187
11  chr15   30230722       30495306     NR_026859        ULK4P3
12  chr15   30230722       30495306     NR_033933       GOLGA8T
13   chr2   97284756       97519894  NM_001115016        KANSL3
14   chr2   97284756       97519894  NM_001293083        FER1L5
15   chr2   97284756       97519894  NM_001322354        LMAN2L
16   chr2   97284756       97519894     NM_016466       ANKRD39
17   chr2   97284756       97519894     NM_017623         CNNM3
18   chr2   97284756       97519894     NM_020184         CNNM4
20   chr2   97284756       97519894     NM_144994       ANKRD23
21   chr2   97284756       97519894     NR_036074       MIR3127,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr18   35116293       35293157     NM_020180          CELF4
1   chr18   35116293       35293157     NR_036202        MIR4318
2    chr2   50789752       50899060  NM_001330082          NRXN1
3    chr5     144574        1519881  NM_001003841        SLC6A19
4    chr5     144574        1519881  NM_001009877           BRD9
5    chr5     144574        1519881     NM_001044         SLC6A3
6    chr5     144574        1519881  NM_001080478        LRRC14B
7    chr5     144574        1519881  NM_001166260         TRIP13
8    chr5     144574        1519881  NM_001193376           TERT
9    chr5     144574        1519881  NM_001242412           AHRR
10   chr5     144574        1519881  NM_001284351         SLC9A3
12   chr5     144574        1519881     NM_004168           SDHA
14   chr5     144574        1519881     NM_006598        SLC12A7
15   chr5     144574        1519881     NM_007030           TPPP
16   chr5     144574        1519881     NM_007277          EXOC3
17   chr5     144574        1519881     NM_013232          PDCD6
18   chr5     144574        1519881     NM_018140          CEP72
19   chr5     144574        1519881     NM_024786        ZDHHC11
20   chr5     144574        1519881     NM_024830         LPCAT1
21   chr5     144574        1519881     NM_030782        CLPTM1L
22   chr5     144574        1519881     NM_033120           NKD2
23   chr5     144574        1519881     NM_052909       PLEKHG4B
24   chr5     144574        1519881     NM_145265        CCDC127
25   chr5     144574        1519881     NM_182632        SLC6A18
26   chr5     144574        1519881     NR_024158         PP7080
27   chr5     144574        1519881     NR_039661        MIR4456
28   chr5     144574        1519881     NR_039662        MIR4457
29   chr5     144574        1519881     NR_039778        MIR4635
31   chr5     144574        1519881     NR_103444   LOC100996325
32   chr5     144574        1519881     NR_104613          HRAT5
33   chr5     144574        1519881     NR_104614   LOC100506688
34   chr5     144574        1519881     NR_106723        MIR6075
35   chr5     144574        1519881     NR_109911  CTD-3080P12.3
36   chr5     144574        1519881     NR_125375   LOC100288152
37   chr5     144574        1519881     NR_125810      LINC01511
38   chr5     144574        1519881     NR_126522      EXOC3-AS1
40   chr7   19730712       19877647  NM_001002926        TWISTNB
41   chr7   19730712       19877647     NM_152774        TMEM196
42   chr7   19730712       19877647     NR_036101        MIR3146
43   chr8    4252816        4412528     NM_033225          CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81480245       81688912     NR_002724         MBL1P
1   chr10   81480245       81688912     NR_029407     LOC642361
2   chr10   81480245       81688912     NR_033857       BMS1P21
3   chr10   81480245       81688912     NR_120611    NUTM2B-AS1
6    chr7      60980        1809501  NM_001031617         COX19
7    chr7      60980        1809501  NM_001080453         INTS1
8    chr7      60980        1809501  NM_001080461          UNCX
9    chr7      60980        1809501  NM_001097620      TMEM184A
10   chr7      60980        1809501  NM_001098201         GPER1
11   chr7      60980        1809501  NM_001128636         ELFN1
12   chr7      60980        1809501  NM_001130965          SUN1
13   chr7      60980        1809501  NM_001134340         PSMG3
14   chr7      60980        1809501  NM_001134395       C7orf50
15   chr7      60980        1809501  NM_001164758       PRKAR1B
22   chr7      60980        1809501  NM_001195127  WI2-2373I1.2
23   chr7      60980        1809501  NM_001284308         ADAP1
27   chr7      60980        1809501  NM_001303473        GPR146
31   chr7      60980        1809501     NM_002360          MAFK
34   chr7      60980        1809501     NM_015949          GET4
35   chr7      60980        1809501     NM_017781        CYP2W1
36   chr7      60980        1809501     NM_020223        FAM20C
38   chr7      60980        1809501     NM_033023         PDGFA
39   chr7      60980        1809501     NM_182491       ZFAND2A
40   chr7      60980        1809501     NM_182924       MICALL2
41   chr7      60980        1809501     NR_001288        TFAMP1
42   chr7      60980        1809501     NR_021487     PSMG3-AS1
43   chr7      60980        1809501     NR_029898        MIR339
44   chr7      60980        1809501     NR_033960     LOC442497
45   chr7      60980        1809501     NR_033963        HRAT92
46   chr7      60980        1809501     NR_075098        DNAAF5
47   chr7      60980        1809501     NR_108065  LOC100507642
48   chr7      60980        1809501     NR_110054  LOC101926963
50   chr7      60980        1809501     NR_110069  LOC101927021
52   chr7      60980        1809501     NR_120508     ELFN1-AS1
53   chr7      60980        1809501     NR_132384  LOC101927000
54   chr7      60980        1809501     NR_134324  LOC105375115
55   chr7      60980        1809501     NR_134325  LOC102723672
58   chr7   75750226       75962347  NM_001110199         SRRM3
59   chr7   75750226       75962347     NM_001540         HSPB1
60   chr7   75750226       75962347     NM_012479         YWHAG
61   chr8    7852031        8003620     NR_003668    DEFB109P1B
62   chr8    7852031        8003620     NR_027424        FAM66E
63   chr8    7852031        8003620     NR_031689      MIR548I3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   67867091       68211541  NM_001127384     CTNNA3
2  chr14   47841719       49270218  NM_001113498      MDGA2
3  chr14   47841719       49270218     NR_037503    MIR548Y
4  chr14   47841719       49270218     NR_039996  LINC00648
5   chr7  110700442      111719323  NM_001099658      LRRN3
6   chr7  110700442      111719323  NM_001244606     IMMP2L
7   chr7  110700442      111719323     NM_014705      DOCK4
9   chr7  110700442      111719323     NR_103806  DOCK4-AS1,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr4   71346404       71492163  NM_001145006       MUC7
2  chr4   71346404       71492163  NM_001286731       AMTN
3  chr4   71346404       71492163     NM_016519       AMBN
5  chr7  109588568      109769763     NR_003024    EIF3IP1
6  chr8   58065289       58190902     NR_038235  LINC01606
7  chr8   58065289       58190902     NR_038874  LOC286177,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr7  132718084      132885447  NM_001317178        CHCHD3
2  chr7  132718084      132885447     NR_037427       MIR3654
3  chr7  132718084      132885447     NR_133931  LOC105375512
4  chr9   43132300       43260191  NM_001012419     ANKRD20A3
5  chr9   43132300       43260191  NM_001012421     ANKRD20A2
6  chr9   43132300       43260191     NR_027472     LOC642929,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr11   97268491       99818411  NM_001243270        CNTN5
3  chr20   14539601       14852288     NM_080676      MACROD2
4  chr20   14539601       14852288     NR_104193  MACROD2-IT1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67846110       68053084  NM_001127384    CTNNA3
2  chr13   80818716       81009354  NM_001318536     SPRY2
5   chr4  145137586      145635146     NM_022475      HHIP
6   chr4  145137586      145635146     NR_037595  HHIP-AS1
7   chr6  162777785      162983003     NM_013988     PARK2,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr14   42096780       42279678  NM_001346175       LRFN5
1  chr15   79730825       79886834     NM_015206    KIAA1024
2   chr8  124920196      125174294  NM_001039112      FER1L6
3   chr8  124920196      125174294     NR_040044  FER1L6-AS1
4   chr8  124920196      125174294     NR_103547  FER1L6-AS2,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr20    5191117        5593933  NM_019593        GPCPD1
1  chr20    5191117        5593933  NM_144773        PROKR2
2  chr20    5191117        5593933  NR_015406     LINC00654
3  chr20    5191117        5593933  NR_029405     LOC643406
4  chr20    5191117        5593933  NR_038240     LINC00658
5  chr20    5191117        5593933  NR_109860  LOC101929207,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   89004952       89247980     NR_024397   NUTM2A-AS1
1   chr10   89004952       89247980     NR_029408    LINC00863
2   chr10   89004952       89247980     NR_046091    LINC00864
3   chr10   89004952       89247980     NR_075100       NUTM2D
5   chr11  132159267      132302649  NM_001012393        OPCML
6   chr11  132159267      132302649  NM_001048209          NTM
11  chr18   14652614       14910083  NM_001145029     ANKRD30B
12  chr18   14652614       14910083     NR_036153    MIR3156-2
13   chr2   25196104       25306236  NM_001319099        EFR3B
15   chr2   25196104       25306236     NR_034113  DNAJC27-AS1
16   chr8   19768370       19879955     NM_000237          LPL
17   chr9   20760822       20935283     NM_017794        FOCAD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145278475      145384168  NM_001277444         NBPF9
1    chr1  145278475      145384168  NM_001278267        NBPF20
2    chr1  145278475      145384168  NM_001302371        NBPF10
3    chr1  145278475      145384168     NM_203458      NOTCH2NL
4    chr1  145278475      145384168     NR_104217       NBPF25P
5    chr1  145278475      145384168     NR_125967  LOC101928979
6   chr10   96415389       98534518     NM_000769       CYP2C19
7   chr10   96415389       98534518     NM_000770        CYP2C8
8   chr10   96415389       98534518     NM_000771        CYP2C9
9   chr10   96415389       98534518     NM_000772       CYP2C18
10  chr10   96415389       98534518  NM_001001732        CC2D2B
11  chr10   96415389       98534518  NM_001098175        ENTPD1
12  chr10   96415389       98534518  NM_001114094          BLNK
13  chr10   96415389       98534518  NM_001130446     C10orf131
14  chr10   96415389       98534518  NM_001143973         TCTN3
17  chr10   96415389       98534518  NM_001278525       ZNF518A
19  chr10   96415389       98534518  NM_001284326        OPALIN
20  chr10   96415389       98534518  NM_001290295        SORBS1
23  chr10   96415389       98534518  NM_001323413      ALDH18A1
27  chr10   96415389       98534518     NM_004088          DNTT
28  chr10   96415389       98534518     NM_012465          TLL2
29  chr10   96415389       98534518     NM_019084          CCNJ
30  chr10   96415389       98534518     NM_020123        TM9SF3
31  chr10   96415389       98534518     NM_020992        PDLIM1
32  chr10   96415389       98534518     NM_152309       PIK3AP1
33  chr10   96415389       98534518     NM_207321         ACSM6
34  chr10   96415389       98534518     NR_036113       MIR3157
35  chr10   96415389       98534518     NR_038444    ENTPD1-AS1
39  chr11   83640994       83767581  NM_001142699          DLG2
43  chr16   21488870       21711083  NM_001077180        METTL9
..    ...        ...            ...           ...           ...
50  chr16   21488870       21711083     NR_049833     MIR3680-2
51  chr16   21488870       21711083     NR_110930  LOC101927814
52   chr2  110135769      110320083  NM_001099289        SH3RF3
53   chr2  110135769      110320083  NM_001321504        SEPT10
55   chr4  189214587      189720288     NR_033869     LINC01060
56   chr5     121811         619371  NM_001080478       LRRC14B
57   chr5     121811         619371  NM_001242412          AHRR
58   chr5     121811         619371  NM_001284351        SLC9A3
59   chr5     121811         619371     NM_004168          SDHA
60   chr5     121811         619371     NM_007277         EXOC3
61   chr5     121811         619371     NM_013232         PDCD6
62   chr5     121811         619371     NM_018140         CEP72
63   chr5     121811         619371     NM_052909      PLEKHG4B
64   chr5     121811         619371     NM_145265       CCDC127
65   chr5     121811         619371     NR_024158        PP7080
66   chr5     121811         619371     NR_039661       MIR4456
68   chr5     121811         619371     NR_103444  LOC100996325
69   chr5     121811         619371     NR_104613         HRAT5
70   chr5     121811         619371     NR_125375  LOC100288152
71   chr5     121811         619371     NR_126522     EXOC3-AS1
72   chr6  155403846      155534104     NM_012454         TIAM2
73   chr7   64059048       64272700  NM_001160183        ZNF138
74   chr7   64059048       64272700  NM_001282360        ZNF107
76   chr7   64059048       64272700     NR_077227  LOC100128885
78   chr7   64059048       64272700     NR_106898       MIR6839
79   chr7   79034398       79213808     NM_012301         MAGI2
80   chr7   79034398       79213808     NR_038343     MAGI2-AS3
83   chr7  110561196      110803323  NM_001099658         LRRN3
84   chr7  110561196      110803323  NM_001244606        IMMP2L
86   chr9   39128375       39280477     NM_033655       CNTNAP3

[64 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr15   30246063       30385841  NM_001282472      GOLGA8J
1   chr15   30246063       30385841  NM_001301025         TJP1
2   chr19   47815237       48278724  NM_001009813        MEIS3
3   chr19   47815237       48278724  NM_001271749        C5AR2
5   chr19   47815237       48278724  NM_001277075       ZNF541
6   chr19   47815237       48278724  NM_001291296         KPTN
9   chr19   47815237       48278724     NM_001736        C5AR1
10  chr19   47815237       48278724     NM_014601         EHD2
11  chr19   47815237       48278724     NM_014681        DHX34
12  chr19   47815237       48278724     NM_015063       SLC8A2
13  chr19   47815237       48278724     NM_015710      GLTSCR2
14  chr19   47815237       48278724     NM_015711      GLTSCR1
16  chr19   47815237       48278724     NR_003048      SNORD23
17  chr19   47815237       48278724     NR_038452     NAPA-AS1
18  chr19   47815237       48278724     NR_038457         NAPA
19  chr19   47815237       48278724     NR_132382  GLTSCR2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21487834       21819102  NM_001077180        METTL9
1   chr16   21487834       21819102  NM_001161683          OTOA
3   chr16   21487834       21819102     NM_005849         IGSF6
6   chr16   21487834       21819102     NR_002594      SLC7A5P2
7   chr16   21487834       21819102     NR_003370        RRN3P1
8   chr16   21487834       21819102     NR_027155        SMG1P3
9   chr16   21487834       21819102     NR_049833     MIR3680-2
10  chr16   21487834       21819102     NR_110930  LOC101927814
11  chr18   35057136       35184126     NM_020180         CELF4
12   chr2  242463942      242657837  NM_001164356         THAP4
13   chr2  242463942      242657837  NM_001165031         DTYMK
14   chr2  242463942      242657837  NM_001330161          ING5
18   chr2  242463942      242657837     NM_032515           BOK
19   chr2  242463942      242657837     NM_178326         ATG4B
20   chr2  242463942      242657837     NR_033346       BOK-AS1
21   chr3  101089259      101198991  NM_001282803         SENP7
23   chr7    4315257        5567089  NM_001033518         WIPI2
25   chr7    4315257        5567089  NM_001037165         FOXK1
26   chr7    4315257        5567089  NM_001040661       SLC29A4
27   chr7    4315257        5567089  NM_001080495        TNRC18
28   chr7    4315257        5567089  NM_001100600          MMD2
29   chr7    4315257        5567089     NM_001101          ACTB
30   chr7    4315257        5567089  NM_001204456          RBAK
31   chr7    4315257        5567089  NM_001204513   RBAK-RBAKDN
32   chr7    4315257        5567089  NM_001321213        FBXL18
33   chr7    4315257        5567089     NM_014855         AP5Z1
34   chr7    4315257        5567089     NM_018059         RADIL
35   chr7    4315257        5567089     NM_020144        PAPOLB
38   chr7    4315257        5567089     NR_015343        RBAKDN
39   chr7    4315257        5567089     NR_015449      RNF216P1
40   chr7    4315257        5567089     NR_030318        MIR589
41   chr7    4315257        5567089     NR_034163       ZNF890P
42   chr7    4315257        5567089     NR_039800       MIR4656
44   chr7    4315257        5567089     NR_126168     LOC221946,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr11    7785246        7946843  NM_153444      OR5P2
1  chr11    7785246        7946843  NM_153445      OR5P3
2  chr11    7785246        7946843  NR_027711     OR5E1P
3  chr11    7785246        7946843  NR_036678  LOC283299
4   chr4   97895421       98582534  NM_174952      STPG2
5   chr4   97895421       98582534  NR_102713  STPG2-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr4  121658515      121805609     NM_018699         PRDM5
1   chr5   22834356       22938239     NM_004061         CDH12
2   chr6  162735620      162835779     NM_013988         PARK2
3   chr9   28209807       28312732  NM_001258282        LINGO2
5   chr9   95663718       95910381  NM_001083536          FGD3
7   chr9   95663718       95910381  NM_001287005         SUSD3
8   chr9   95663718       95910381     NM_004148         NINJ1
10  chr9   95663718       95910381     NR_121565  LOC101927954
11  chr9   95663718       95910381     NR_134468        CARD19,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83607397       83728698  NM_001142699          DLG2
4   chr15   20284304       20564609     NR_038836       CHEK2P2
5    chr3  163654490      163912799     NR_031665       MIR1263
6    chr9   39112806       39422547  NM_001085452     SPATA31A1
7    chr9   39112806       39422547     NM_033655       CNTNAP3
8    chr9   39112806       39422547     NR_026803       FAM74A1
9    chr9  119729499      121332417     NM_014010         ASTN2
10   chr9  119729499      121332417     NM_138557          TLR4
11   chr9  119729499      121332417     NR_003708      SNORA70C
12   chr9  119729499      121332417     NR_109806  LOC101928797,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   47861232       48176555  NM_001113498     MDGA2
1   chr3   41356115       41502480  NM_001322500      ULK4
3   chr7  110564861      110797231  NM_001099658     LRRN3
4   chr7  110564861      110797231  NM_001244606    IMMP2L,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr4   94173579       94952627  NM_001510     GRID2
1  chr4   94173579       94952627  NM_005172     ATOH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr19   47840475       47941044  NM_001009813         MEIS3
1   chr19   47840475       47941044  NM_001271749         C5AR2
5   chr19   47840475       47941044     NM_014681         DHX34
6   chr19   47840475       47941044     NM_015063        SLC8A2
8    chr2  181870098      182001890  NM_001278554        UBE2E3
11   chr2  181870098      182001890     NR_130784  LOC101927156
12   chr5   24063330       24186801     NR_131245       C5orf17
13   chr7  110758331      111017862  NM_001099658         LRRN3
14   chr7  110758331      111017862  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245039325      245148953  NM_001143943        EFCAB2
3    chr1  245039325      245148953     NR_111907  LOC101928068
4   chr12   27133277       27253566  NM_001080406      C12orf71
5   chr12   27133277       27253566  NM_001271811         MED21
6   chr12   27133277       27253566     NM_016551        TM7SF3
7   chr13   86327933       86499452     NM_032229       SLITRK6
8   chr15   58827063       59151613     NM_000236          LIPC
9   chr15   58827063       59151613  NM_001040450        FAM63B
11  chr15   58827063       59151613     NM_001110        ADAM10
12  chr15   58827063       59151613     NR_073415     HSP90AB4P
13  chr15   58827063       59151613     NR_135474  LOC101928725
14  chr16   21689898       21905731  NM_001161683          OTOA
15  chr16   21689898       21905731  NM_001310148        NPIPB4
18  chr16   21689898       21905731     NR_003370        RRN3P1
19   chr5  151303678      151431775     NM_000171         GLRA1
20   chr5  151303678      151431775     NR_109876    CTB-12O2.1
21   chr9     330698         473422  NM_001190458         DOCK8
22   chr9     330698         473422  NM_001256876         KANK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187184846      187469389     NR_126347     LINC01036
1    chr1  187184846      187469389     NR_132374     LINC01037
2   chr10   37383848       37522713     NM_052997      ANKRD30A
3   chr14   81633333       81943181  NM_001256430         STON2
4   chr14   81633333       81943181  NM_001278940        GTF2A1
5   chr14   81633333       81943181     NM_005065         SEL1L
8   chr14   81633333       81943181     NR_003021       SNORA79
9   chr14   81633333       81943181     NR_109999  LOC100506700
10  chr14   81633333       81943181     NR_135252  LOC101928504,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr21   30805892       31134435     NM_000830      GRIK1
4  chr21   30805892       31134435     NR_027021  GRIK1-AS1
5  chr21   30805892       31134435     NR_033368  GRIK1-AS2
6   chr7  110706462      111188632  NM_001099658      LRRN3
7   chr7  110706462      111188632  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  165240578      165483599  NM_001174069         LMX1A
1    chr1  165240578      165483599  NM_001256571          RXRG
4    chr1  165240578      165483599     NR_026744     LOC400794
6   chr13   22378024       22646536     NR_047040     LINC00424
7   chr15   20657769       21084380  NM_001145004      GOLGA6L6
8   chr15   20657769       21084380  NM_001277303        POTEB2
9   chr15   20657769       21084380     NM_207355        POTEB3
10  chr15   20657769       21084380     NR_027411      GOLGA8CP
11  chr15   20657769       21084380     NR_027992        NBEAP1
12  chr15   20657769       21084380     NR_036062     MIR3118-2
13  chr15   20657769       21084380     NR_036432       HERC2P3
15  chr19   47837872       47938813  NM_001009813         MEIS3
16  chr19   47837872       47938813  NM_001271749         C5AR2
20  chr19   47837872       47938813     NM_014681         DHX34
21  chr19   47837872       47938813     NM_015063        SLC8A2
23   chr2   51121280       51657272  NM_001330079         NRXN1
26   chr2   51121280       51657272     NR_135237     LOC730100
27   chr3  105485365      105615156  NM_001321786          CBLB
33   chr5   99575479       99720403     NR_027503  LOC100133050,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  144045073      144249085  NM_001278267      NBPF20
1   chr18   35075392       35203230     NM_020180       CELF4
2   chr19    1121874        1427990     NM_000156        GAMT
3   chr19    1121874        1427990     NM_000455       STK11
4   chr19    1121874        1427990  NM_001001975       ATP5D
5   chr19    1121874        1427990  NM_001100122       SBNO2
6   chr19    1121874        1427990     NM_001280       CIRBP
9   chr19    1121874        1427990     NM_001405       EFNA2
11  chr19    1121874        1427990     NM_017914    C19orf24
12  chr19    1121874        1427990     NM_024407      NDUFS7
13  chr19    1121874        1427990     NM_032853        MUM1
15  chr19    1121874        1427990     NM_152769       CBARP
16  chr19    1121874        1427990     NM_170711      DAZAP1
17  chr19    1121874        1427990     NM_177401        MIDN
20  chr19    1121874        1427990     NR_027271   CIRBP-AS1
21  chr20   14676727       14818771     NM_080676     MACROD2
22   chr4    9010004       10589003     NM_000798        DRD5
23   chr4    9010004       10589003  NM_001001290      SLC2A9
24   chr4    9010004       10589003  NM_001040448     DEFB131
25   chr4    9010004       10589003  NM_001242326    USP17L25
33   chr4    9010004       10589003  NM_001256852    USP17L10
34   chr4    9010004       10589003  NM_001256853    USP17L12
36   chr4    9010004       10589003  NM_001256854    USP17L11
39   chr4    9010004       10589003  NM_001256855    USP17L13
40   chr4    9010004       10589003  NM_001256857    USP17L17
41   chr4    9010004       10589003  NM_001256860    USP17L19
42   chr4    9010004       10589003  NM_001256861    USP17L20
43   chr4    9010004       10589003  NM_001256894    USP17L15
44   chr4    9010004       10589003     NM_005112        WDR1
46   chr4    9010004       10589003     NM_052964        CLNK
47   chr4    9010004       10589003     NM_053042     ZNF518B
48   chr4    9010004       10589003     NR_027279    USP17L6P
49   chr4    9010004       10589003     NR_031688    MIR548I2
50   chr4    9010004       10589003     NR_036090     MIR3138
51   chr4    9010004       10589003     NR_046416    USP17L9P
52   chr7  108498050      108627785  NM_001024607     C7orf66
53   chr8    7122928        7471239  NM_001040705    DEFB107B
54   chr8    7122928        7471239  NM_001081551    DEFB103A
55   chr8    7122928        7471239  NM_001164457     ZNF705G
56   chr8    7122928        7471239  NM_001205266      DEFB4B
57   chr8    7122928        7471239  NM_001256873     USP17L1
58   chr8    7122928        7471239  NM_001256874     USP17L4
59   chr8    7122928        7471239  NM_001282478     PRR23D2
60   chr8    7122928        7471239  NM_001282479     PRR23D1
61   chr8    7122928        7471239     NM_058200     SPAG11B
65   chr8    7122928        7471239     NM_080389    DEFB104A
66   chr8    7122928        7471239     NM_152250    DEFB105A
67   chr8    7122928        7471239     NM_152251    DEFB106A
68   chr8    7122928        7471239     NR_003668  DEFB109P1B
69   chr8    7122928        7471239     NR_027000   LINC00965
71   chr8    7122928        7471239     NR_027423      FAM66B
72   chr8    7122928        7471239     NR_046343    FAM90A7P
74   chr9   28228411       28341681  NM_001258282      LINGO2
76   chr9   31267631       31558701     NR_135134   LINC01243,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   28199436       28391051  NM_000275      OCA2
2  chr15   28199436       28391051  NM_004667     HERC2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12763238       12899522  NM_001080830      PRAMEF12
1    chr1   12763238       12899522  NM_001103170       AADACL3
2    chr1   12763238       12899522  NM_001146344      PRAMEF11
3    chr1   12763238       12899522  NM_001294139       PRAMEF1
5    chr1   12763238       12899522     NM_152290      C1orf158
6   chr13  102865970      103001915  NM_001321932         FGF14
13  chr13  102865970      103001915     NR_036486     FGF14-IT1
14   chr2   97144867       97367080  NM_001115016        KANSL3
15   chr2   97144867       97367080  NM_001285485        NEURL3
16   chr2   97144867       97367080  NM_001293083        FER1L5
17   chr2   97144867       97367080  NM_001319085        ARID5A
21   chr2   97144867       97367080     NR_135564  LOC105373496
22   chr2  181835283      182518054     NM_000885         ITGA4
23   chr2  181835283      182518054  NM_001278554        UBE2E3
27   chr2  181835283      182518054     NR_027689         CERKL
28   chr2  181835283      182518054     NR_039637       MIR4437
29   chr2  181835283      182518054     NR_130784  LOC101927156
30   chr4  169246758      169369984  NM_001012967        DDX60L,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   22599666       22909855  NR_103810  LINC00540
1   chr7  146034795      146144881  NM_014141    CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   23413132       23567142     NR_107021    MIR8054
1   chr15  100182452      100804909  NM_001130928      MEF2A
2   chr15  100182452      100804909  NM_001284417     LYSMD4
5   chr15  100182452      100804909     NM_139057   ADAMTS17
6   chr15  100182452      100804909     NR_003260    DNM1P46
7   chr15  100182452      100804909     NR_135737  LOC400464
8   chr19   24202954       24313701  NM_001278661     ZNF254
11  chr19   47855877       47994923  NM_001009813      MEIS3
12  chr19   47855877       47994923  NM_001291296       KPTN
15  chr19   47855877       47994923     NM_014681      DHX34
16  chr19   47855877       47994923     NM_015063     SLC8A2
17  chr19   47855877       47994923     NR_038452   NAPA-AS1
18  chr19   47855877       47994923     NR_038457       NAPA
19   chr4   88000142       88145157  NM_001166693       AFF1
20   chr4   88000142       88145157  NM_001292003      KLHL8
24   chr7  118480295      120717631  NM_001105533      CPED1
25   chr7  118480295      120717631     NM_012281      KCND2
26   chr7  118480295      120717631     NM_012338    TSPAN12
27   chr7  118480295      120717631     NM_019071       ING3
30   chr7  118480295      120717631     NR_131960     LVCAT5
34   chr9    4447710        4594645     NM_004170     SLC1A1,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr5   99600406       99734554  NR_027503  LOC100133050
1  chr9  101880358      101981484  NM_004612        TGFBR1
2  chr9  101880358      101981484  NM_033087          ALG2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  189975541      190104802  NM_001317188        BRINP3
2   chr16   85277636       85561129     NR_038859     LINC00311
3   chr16   85277636       85561129     NR_049816       MIR5093
4   chr20   10861648       11132644     NR_109866  LOC101929413
5    chr7  153856674      155292164  NM_001039350          DPP6
8    chr7  153856674      155292164  NM_001346590        INSIG1
9    chr7  153856674      155292164     NM_001427           EN2
10   chr7  153856674      155292164     NM_007349        PAXIP1
11   chr7  153856674      155292164     NM_024012         HTR5A
13   chr7  153856674      155292164     NR_024476    PAXIP1-AS2
15   chr7  153856674      155292164     NR_028090    PAXIP1-AS1
16   chr7  153856674      155292164     NR_038945     HTR5A-AS1
17   chr7  153856674      155292164     NR_103545         BLACE
18   chr9    9789951       10013256     NM_002839         PTPRD
19   chr9    9789951       10013256     NR_135135  LOC105375972,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   38219705       38338449  NM_001310135       TTC6
1  chr16   79777737       79941187     NR_104660  LINC01229
3  chr16   79777737       79941187     NR_104663     MAFTRR
4   chr5   59634141       59737408  NM_001165899      PDE4D,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67846018       67947094  NM_001127384     CTNNA3
2   chr12   41644398       42045761  NM_001164595     PDZRN4
4   chr17   21319795       21494519  NM_001113434   C17orf51
5   chr17   21319795       21494519  NM_001194958     KCNJ18
6   chr17   21319795       21494519     NM_021012     KCNJ12
7   chr22   20124604       20224877  NM_001243537    CCDC188
8   chr22   20124604       20224877     NM_013373     ZDHHC8
9   chr22   20124604       20224877     NR_026919  LINC00896
10  chr22   20124604       20224877     NR_038460  LOC284865
11   chr3  116080224      116223841  NM_001318915      LSAMP
12   chr3  116080224      116223841     NR_109998  LSAMP-AS1
13   chr7   75887295       76010521  NM_001110199      SRRM3
14   chr7   75887295       76010521     NM_001540      HSPB1
15   chr7   75887295       76010521     NM_012479      YWHAG,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  245000639      245121019  NM_001312871         COX20
2   chr1  245000639      245121019     NM_004501        HNRNPU
4   chr1  245000639      245121019     NR_132782      SNORA100
5   chr7  132751408      133072422  NM_001037126         EXOC4
6   chr7  132751408      133072422  NM_001317178        CHCHD3
9   chr7  132751408      133072422     NR_106749       MIR6133
10  chr7  132751408      133072422     NR_133931  LOC105375512,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr15   82839924       82969986  NM_001164465   GOLGA6L10
1  chr15   82839924       82969986  NM_001291420    GOLGA6L9
3  chr15   82839924       82969986     NR_026811   GOLGA2P10
4  chr15   82839924       82969986     NR_045529   ADAMTS7P1
5  chr15   82839924       82969986     NR_102747   LOC727751
6  chr15   82839924       82969986     NR_111962  GOLGA6L17P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  224668959      224879372  NM_001322302         CNIH3
4   chr15   28739842       28928022     NR_033351       GOLGA8F
5   chr15   28739842       28928022     NR_033353       GOLGA8G
6   chr15   28739842       28928022     NR_036443       HERC2P9
7    chr2   78789368       78901780     NR_136312  LOC105374820
8   chr22   32341286       32548642     NM_000343        SLC5A1
9   chr22   32341286       32548642  NM_001010859      C22orf42
11  chr22   32341286       32548642     NM_003405         YWHAH
12  chr22   32341286       32548642     NM_015372      C22orf24
13  chr22   32341286       32548642     NR_040114       AP1B1P1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  133601675      133823815     NM_207363        NCKAP5
1   chr2  133601675      133823815     NR_135572  LOC101928185
2   chr3  116108034      116471663  NM_001318915         LSAMP
3   chr3  116108034      116471663     NR_015391         TUSC7
4   chr7   64039514       64275042  NM_001160183        ZNF138
5   chr7   64039514       64275042  NM_001282360        ZNF107
6   chr7   64039514       64275042     NR_033245     LOC641746
8   chr7   64039514       64275042     NR_077227  LOC100128885
10  chr7   64039514       64275042     NR_106898       MIR6839
11  chr8    7889989        8019126     NR_031689      MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   28762853       29019314  NM_001282468   GOLGA8M
1   chr15   28762853       29019314     NR_026589   WHAMMP2
2   chr15   28762853       29019314     NR_033351   GOLGA8F
3   chr15   28762853       29019314     NR_033353   GOLGA8G
4   chr15   28762853       29019314     NR_036443   HERC2P9
5    chr2   75842420       76020375  NM_001201334     GCFC2
8    chr2   75842420       76020375     NM_014763    MRPL19
9    chr7   80117188       80251933  NM_001001547      CD36
10   chr7   80117188       80251933  NM_001102386     GNAT3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  237536906      237665864     NM_001035          RYR2
1   chr1  237536906      237665864     NR_039626       MIR4428
2   chr2  133688884      133816739     NM_207363        NCKAP5
3   chr2  133688884      133816739     NR_135572  LOC101928185
4   chr5  106793537      107492247  NM_001163315        FBXL17
5   chr5  106793537      107492247     NM_001962         EFNA5
6   chr7  110772512      110909937  NM_001244606        IMMP2L
8   chr9   43081616       43305508  NM_001012419     ANKRD20A3
9   chr9   43081616       43305508  NM_001012421     ANKRD20A2
10  chr9   43081616       43305508     NR_027472     LOC642929,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr9   44335260       44569983  NR_121564  LOC101927827
1  chr9   44335260       44569983  NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   14890095       15681251  NM_001033087       MACROD2
2   chr20   14890095       15681251     NR_037841   MACROD2-AS1
4    chr4   30671602       31989401  NM_001173523         PCDH7
7    chr4   30671602       31989401     NR_125935  LOC102723778
8    chr5  117459760      117818023     NR_104609       HNCAT21
9    chr5  117459760      117818023     NR_104610        HRAT56
10   chr5  117459760      117818023     NR_104997  LOC102467224,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67968226       68094813  NM_001127384        CTNNA3
2   chr13   46918423       47065435  NM_001286761        RUBCNL
4   chr13   46918423       47065435     NR_120426     LINC01198
5   chr16   22200656       22330391  NM_001258033        POLR3E
6   chr16   22200656       22330391     NM_013302         EEF2K
7    chr7  132704138      132829148  NM_001317178        CHCHD3
9    chr7  132704138      132829148     NR_037427       MIR3654
10   chr7  132704138      132829148     NR_133931  LOC105375512
11   chr8  125002117      126339906  NM_001039112        FER1L6
12   chr8  125002117      126339906  NM_001146160        TATDN1
13   chr8  125002117      126339906  NM_001282974         MTSS1
15   chr8  125002117      126339906     NM_003129          SQLE
16   chr8  125002117      126339906     NM_005005        NDUFB9
17   chr8  125002117      126339906     NM_007218        RNF139
18   chr8  125002117      126339906     NM_014846        WASHC5
19   chr8  125002117      126339906     NM_017956        TRMT12
20   chr8  125002117      126339906     NM_152412        ZNF572
21   chr8  125002117      126339906     NM_173685        NSMCE2
22   chr8  125002117      126339906     NM_194291        TMEM65
23   chr8  125002117      126339906     NR_027321     LINC00964
24   chr8  125002117      126339906     NR_039806      MIR4662A
25   chr8  125002117      126339906     NR_039809      MIR4662B
26   chr8  125002117      126339906     NR_040044    FER1L6-AS1
27   chr8  125002117      126339906     NR_103547    FER1L6-AS2
28   chr8  125002117      126339906     NR_106903       MIR6844
29   chr8  125002117      126339906     NR_108047    RNF139-AS1
31   chr8  125002117      126339906     NR_125420  LOC101927588
32   chr8  125002117      126339906     NR_134457  LOC105375744
33   chr9   28726668       28855347  NM_001258282        LINGO2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   12832249       13023416  NM_001009611    PRAMEF4
1   chr1   12832249       13023416  NM_001010889    PRAMEF6
2   chr1   12832249       13023416  NM_001010890    PRAMEF9
3   chr1   12832249       13023416  NM_001012276    PRAMEF8
4   chr1   12832249       13023416  NM_001013631   HNRNPCL1
5   chr1   12832249       13023416  NM_001080830   PRAMEF12
6   chr1   12832249       13023416  NM_001146181   HNRNPCL3
7   chr1   12832249       13023416  NM_001146344   PRAMEF11
8   chr1   12832249       13023416  NM_001294139    PRAMEF1
9   chr1   12832249       13023416  NM_001302551   HNRNPCL4
11  chr1   12832249       13023416     NM_023014    PRAMEF2
12  chr4   94092624       94231802     NM_001510      GRID2
13  chr9   80113703       80223435     NM_004297      GNA14
14  chr9   80113703       80223435     NR_121184  GNA14-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17     185825         447423  NM_001013672      C17orf97
1   chr17     185825         447423  NM_001128159         VPS53
2   chr17     185825         447423  NM_001190411        RPH3AL
4   chr17     185825         447423     NM_182705         RFLNB
5   chr17     185825         447423     NR_136407  LOC105371430
6   chr19   23838352       23976073     NM_138286        ZNF681
7   chr19   23838352       23976073     NM_138330        ZNF675
8   chr19   23838352       23976073     NR_003662       RPSAP58
9    chr9   28583244       29077059  NM_001258282        LINGO2
11   chr9   28583244       29077059     NR_030597        MIR876
12   chr9   28583244       29077059     NR_030618        MIR873
13   chr9  116765406      117030813  NM_001318041        ZNF618
14   chr9  116765406      117030813     NM_001633          AMBP
15   chr9  116765406      117030813     NM_032888       COL27A1
16   chr9  116765406      117030813     NM_138424         KIF12
17   chr9  116765406      117030813     NR_030255        MIR455,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   61086173       61203177     NR_039624       MIR4426
1   chr17    3864793        4088702  NM_001254755        CYB5D2
3   chr17    3864793        4088702  NM_001257999        ANKFY1
4   chr17    3864793        4088702     NM_015113         ZZEF1
7   chr17    3864793        4088702     NM_174955        ATP2A3
8   chr17   29352834       29490517     NM_000267           NF1
10  chr17   29352834       29490517     NR_039886       MIR4733
11  chr21   23440660       23654570     NR_038400     LINC00308
12  chr21   23440660       23654570     NR_109959  LOC101927843
13   chr6  162681993      162805254     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67171176       67314564  NM_001018070        CORO1B
1   chr11   67171176       67314564  NM_001078650       TMEM134
2   chr11   67171176       67314564  NM_001166222        CARNS1
3   chr11   67171176       67314564  NM_001256508      TBC1D10C
4   chr11   67171176       67314564  NM_001300895         CABP4
6   chr11   67171176       67314564  NM_001302959           AIP
7   chr11   67171176       67314564  NM_001318496         CABP2
8   chr11   67171176       67314564     NM_003952       RPS6KB2
10  chr11   67171176       67314564     NM_004910       PITPNM1
11  chr11   67171176       67314564     NM_005608       PTPRCAP
12  chr11   67171176       67314564     NM_005851       CDK2AP2
15  chr11   67171176       67314564     NM_206997        GPR152
18  chr11   67171176       67314564     NR_106810       MIR6752
19  chr13   63110989       63318345     NR_047029     LINC00448
20  chr15   20679630       20809655  NM_001145004      GOLGA6L6
21  chr15   20679630       20809655     NR_027411      GOLGA8CP
22  chr15   20679630       20809655     NR_036432       HERC2P3
23   chr2   97509378       97613071  NM_001122646       FAM178B
25   chr2   97509378       97613071     NM_016466       ANKRD39
27   chr2   97509378       97613071     NM_017789        SEMA4C
28   chr2   97509378       97613071     NM_144994       ANKRD23
29   chr2   97509378       97613071     NR_110209  LOC101927053
30  chr20   25385559       25628109  NM_001318226          NINL
31  chr20   25385559       25628109     NM_021067         GINS1
32  chr20   25385559       25628109     NM_152667          NANP
33  chr20   25385559       25628109     NR_126465    ZNF337-AS1
36   chr3    4116785        4464648  NM_001164675         SUMF1
37   chr3    4116785        4464648  NM_001243723        SETMAR
39   chr9   41918653       42344533     NR_003670        FGF7P3
40   chr9   41918653       42344533     NR_015363         GLIDR
43   chr9   41918653       42344533     NR_126048  LOC102724238
44   chr9   41918653       42344533     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr8    7162567        7405595  NM_001040705    DEFB107B
1   chr8    7162567        7405595  NM_001081551    DEFB103A
2   chr8    7162567        7405595  NM_001164457     ZNF705G
3   chr8    7162567        7405595  NM_001205266      DEFB4B
4   chr8    7162567        7405595  NM_001256873     USP17L1
5   chr8    7162567        7405595  NM_001256874     USP17L4
6   chr8    7162567        7405595  NM_001282478     PRR23D2
7   chr8    7162567        7405595  NM_001282479     PRR23D1
8   chr8    7162567        7405595     NM_058200     SPAG11B
12  chr8    7162567        7405595     NM_080389    DEFB104A
13  chr8    7162567        7405595     NM_152250    DEFB105A
14  chr8    7162567        7405595     NM_152251    DEFB106A
15  chr8    7162567        7405595     NR_003668  DEFB109P1B
16  chr8    7162567        7405595     NR_027423      FAM66B,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr19   21672779       21787031  NM_001001415     ZNF429
1  chr19   21672779       21787031     NR_037194  LINC00664
2   chr3     877407        1002130     NR_110118  LINC01266,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr2   26576851       26827178  NM_001029881       CIB4
1  chr2   26576851       26827178  NM_001105519    C2orf70
2  chr2   26576851       26827178     NM_004802       OTOF
3  chr2   26576851       26827178     NM_033505    SELENOI
4  chr2   26576851       26827178     NM_145038       DRC1
6  chr6   65508697       65848343  NM_001142800        EYS
7  chr7   21161341       21500078  NM_001326542        SP4
9  chr9    2447551        2556786     NR_015375  VLDLR-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr17   63509734       63639992  NM_001037325    CEP112
3  chr17   63509734       63639992     NM_004655     AXIN2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   12775229       13143619  NM_001009611   PRAMEF4
1   chr1   12775229       13143619  NM_001010889   PRAMEF6
2   chr1   12775229       13143619  NM_001010890   PRAMEF9
3   chr1   12775229       13143619  NM_001012276   PRAMEF8
4   chr1   12775229       13143619  NM_001013407   PRAMEF5
5   chr1   12775229       13143619  NM_001013631  HNRNPCL1
6   chr1   12775229       13143619  NM_001080830  PRAMEF12
7   chr1   12775229       13143619  NM_001099850  PRAMEF18
8   chr1   12775229       13143619  NM_001100631  PRAMEF22
9   chr1   12775229       13143619  NM_001103170   AADACL3
10  chr1   12775229       13143619  NM_001146181  HNRNPCL3
11  chr1   12775229       13143619  NM_001146344  PRAMEF11
12  chr1   12775229       13143619  NM_001294139   PRAMEF1
13  chr1   12775229       13143619  NM_001302551  HNRNPCL4
14  chr1   12775229       13143619  NM_001306072  PRAMEF26
15  chr1   12775229       13143619  NM_001310134  PRAMEF25
17  chr1   12775229       13143619     NM_023014   PRAMEF2
18  chr1   12775229       13143619     NM_152290  C1orf158
19  chr4   69119796       69227689  NM_001031732    YTHDC1
20  chr9   17205315       17312111  NM_001114395     CNTLN,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81520721       81677070     NR_029407   LOC642361
1   chr10   81520721       81677070     NR_033857     BMS1P21
2   chr10   81520721       81677070     NR_120611  NUTM2B-AS1
5    chr2   52015806       52132808     NR_135237   LOC730100
6    chr4  121655606      122000242     NM_018699       PRDM5
7    chr4  121655606      122000242     NM_024574        NDNF
8    chr7  110522072      110764861  NM_001099658       LRRN3
9    chr7  110522072      110764861  NM_001244606      IMMP2L
11   chr7  110603951      110894809  NM_001099658       LRRN3
12   chr7  110603951      110894809  NM_001244606      IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145299784      145685008  NM_001012758        NUDT17
1    chr1  145299784      145685008  NM_001039888      ANKRD34A
2    chr1  145299784      145685008  NM_001184795        PEX11B
3    chr1  145299784      145685008  NM_001277444         NBPF9
4    chr1  145299784      145685008  NM_001278267        NBPF20
5    chr1  145299784      145685008  NM_001280799       ANKRD35
6    chr1  145299784      145685008  NM_001302371        NBPF10
7    chr1  145299784      145685008  NM_001303040        ITGA10
8    chr1  145299784      145685008  NM_001303456        POLR3C
9    chr1  145299784      145685008  NM_001313972         TXNIP
11   chr1  145299784      145685008     NM_005105         RBM8A
12   chr1  145299784      145685008     NM_006099         PIAS3
15   chr1  145299784      145685008     NM_014455        RNF115
16   chr1  145299784      145685008     NM_032305       POLR3GL
17   chr1  145299784      145685008     NM_145277          HFE2
18   chr1  145299784      145685008     NM_153713         LIX1L
19   chr1  145299784      145685008     NR_002328        GNRHR2
23   chr1  145299784      145685008     NR_104217       NBPF25P
24   chr1  145299784      145685008     NR_106794       MIR6736
25   chr1  145299784      145685008     NR_125967  LOC101928979
26  chr11   48309270       48530894  NM_001004702         OR4C3
27  chr11   48309270       48530894  NM_001004725         OR4S1
28  chr11   48309270       48530894  NM_001005512        OR4A47
29  chr11   48309270       48530894  NM_001005513        OR4C45
30  chr12   27231355       27372740  NM_001080406      C12orf71
31   chr2   75934924       76159023  NM_001201334         GCFC2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   12835739       13074959  NM_001009611     PRAMEF4
1    chr1   12835739       13074959  NM_001010889     PRAMEF6
2    chr1   12835739       13074959  NM_001010890     PRAMEF9
3    chr1   12835739       13074959  NM_001012276     PRAMEF8
4    chr1   12835739       13074959  NM_001013631    HNRNPCL1
5    chr1   12835739       13074959  NM_001080830    PRAMEF12
6    chr1   12835739       13074959  NM_001099850    PRAMEF18
7    chr1   12835739       13074959  NM_001100631    PRAMEF22
8    chr1   12835739       13074959  NM_001146181    HNRNPCL3
9    chr1   12835739       13074959  NM_001146344    PRAMEF11
10   chr1   12835739       13074959  NM_001294139     PRAMEF1
11   chr1   12835739       13074959  NM_001302551    HNRNPCL4
12   chr1   12835739       13074959  NM_001306072    PRAMEF26
13   chr1   12835739       13074959  NM_001310134    PRAMEF25
15   chr1   12835739       13074959     NM_023014     PRAMEF2
16  chr10   89001381       89272576  NM_001178118      MINPP1
18  chr10   89001381       89272576     NR_024397  NUTM2A-AS1
19  chr10   89001381       89272576     NR_029408   LINC00863
20  chr10   89001381       89272576     NR_039825     MIR4678
21  chr10   89001381       89272576     NR_046091   LINC00864
22  chr10   89001381       89272576     NR_075100      NUTM2D
24  chr13   88042508       88274287     NR_033829   MIR4500HG
25  chr13   88042508       88274287     NR_039722     MIR4500
26   chr5   17684674       17832735     NR_134286   LOC646241,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  152439508      152659357     NM_014357      LCE2B
1    chr1  152439508      152659357     NM_019060      CRCT1
2    chr1  152439508      152659357     NM_032563      LCE3D
3    chr1  152439508      152659357     NM_178429      LCE2C
4    chr1  152439508      152659357     NM_178430      LCE2D
5    chr1  152439508      152659357     NM_178431      LCE3A
6    chr1  152439508      152659357     NM_178433      LCE3B
7    chr1  152439508      152659357     NM_178434      LCE3C
8    chr1  152439508      152659357     NM_178435      LCE3E
9    chr1  152439508      152659357     NM_178438      LCE5A
10   chr1  243527774      243719578  NM_001206729       AKT3
12   chr1  243527774      243719578     NM_006642    SDCCAG8
14  chr18    8103286        8235838     NM_002845      PTPRM
15   chr4   69277344       69378073     NM_014058  TMPRSS11E
16   chr6   22073578       22214691     NR_015410     CASC15
17   chr6   22073578       22214691     NR_034143      NBAT1
18   chr7   53319085       53753369     NR_038371  LINC01446
19   chr7   88933771       89088016     NM_181646    ZNF804B
20   chr9   28502217       29537168  NM_001258282     LINGO2
22   chr9   28502217       29537168     NR_030597     MIR876
23   chr9   28502217       29537168     NR_030618     MIR873,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   67421014       67566439     NM_020806      GPHN
1   chr15   26995779       27158150     NM_000810    GABRA5
3   chr15   26995779       27158150  NM_001278631    GABRB3
5    chr2  242424107      242549876  NM_001164356     THAP4
6    chr2  242424107      242549876  NM_001271978     STK25
9    chr2  242424107      242549876     NM_014808     FARP2
11   chr2  242424107      242549876     NM_032515       BOK
12   chr2  242424107      242549876     NR_033346   BOK-AS1
13   chr7  110506583      110676096  NM_001244606    IMMP2L
15   chr8    3643507        3856458     NM_033225     CSMD1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2  216249158      216376869  NM_001306129           FN1
3  chr2  216249158      216376869     NR_110607  LOC102724849
4  chr9   11967210       13275169     NM_000550         TYRP1
5  chr9   11967210       13275169  NM_001261407          MPDZ
7  chr9   11967210       13275169     NM_203403       LURAP1L
8  chr9   11967210       13275169     NR_125775   LURAP1L-AS1
9  chr9   11967210       13275169     NR_132976      SNORD137,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  162817801      162939998     NM_178550    CCDC190
1  chr16   68594491       69020498  NM_001305204      ZFP90
3  chr16   68594491       69020498  NM_001317184       CDH1
4  chr16   68594491       69020498  NM_001317195       CDH3
5  chr16   68594491       69020498     NM_024562     TANGO6
6  chr16   68594491       69020498     NR_106988  MIR7641-2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   27579498       27681290     NR_138082     ARMC4P1
1    chr2   53457133       54995494  NM_001003937      TSPYL6
2    chr2   53457133       54995494  NM_001039753        EML6
3    chr2   53457133       54995494  NM_001100396     C2orf73
4    chr2   53457133       54995494  NM_001164165  GPR75-ASB3
5    chr2   53457133       54995494  NM_001201965        ASB3
6    chr2   53457133       54995494  NM_001320587       ACYP2
9    chr2   53457133       54995494  NM_001346127       CHAC2
10   chr2   53457133       54995494     NM_003128      SPTBN1
11   chr2   53457133       54995494     NM_006794       GPR75
12   chr2   53457133       54995494     NM_014614       PSME4
13   chr2   53457133       54995494     NM_015701      ERLEC1
17   chr2   53457133       54995494     NR_002229   RPL23AP32
18   chr2   53457133       54995494     NR_037453     MIR3682
19   chr9  116738791      116847287  NM_001318041      ZNF618
20   chr9  116738791      116847287     NM_001633        AMBP,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr20   14887496       15065213  NM_080676       MACROD2
1  chr20   14887496       15065213  NR_037841   MACROD2-AS1
3   chr9   44239407       44431211  NR_121564  LOC101927827
4   chr9   44239407       44431211  NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12    1054183        1232014  NM_001297419      RAD52
3   chr12    1054183        1232014  NM_001301248       ERC1
5   chr13   54699130       54871791     NR_108062  LINC00458
7   chr16   68609235       68851088  NM_001305204      ZFP90
8   chr16   68609235       68851088  NM_001317184       CDH1
9   chr16   68609235       68851088  NM_001317195       CDH3
10  chr16   68609235       68851088     NR_106988  MIR7641-2
11   chr3  118719542      118868617  NM_001015887     IGSF11
13   chr3  118719542      118868617     NM_152539    C3orf30,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   19109362       19443350  NM_001142308    MALRD1
1   chr6  129201696      129358224  NM_001079823     LAMA2
2   chr7  110658426      110945403  NM_001099658     LRRN3
3   chr7  110658426      110945403  NM_001244606    IMMP2L
5   chr8   16011990       16267057     NM_002445      MSR1,     chrom  cnv_start  cnv_terminate    tx_name     gene_name
0   chr13   63311025       63549722  NR_047029     LINC00448
3   chr16   61070644       61471842  NR_039624       MIR4426
4   chr16   79784322       79942517  NR_104660     LINC01229
6   chr16   79784322       79942517  NR_104663        MAFTRR
7   chr21   23444301       23568247  NR_038400     LINC00308
8   chr21   23444301       23568247  NR_109959  LOC101927843
9    chr6  136867847      136970074  NM_003980          MAP7
10   chr6  136867847      136970074  NM_005923        MAP3K5
11   chr6  136867847      136970074  NR_125858  LOC101928461,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   31432905       31592263  NM_001304274     IMMP1L
1   chr11   31432905       31592263     NM_019040       ELP4
2   chr11   31432905       31592263     NM_181706    DNAJC24
3   chr12   27148675       27512304  NM_001080406   C12orf71
4   chr12   27148675       27512304  NM_001248002     ARNTL2
5   chr12   27148675       27512304  NM_001271811      MED21
6   chr12   27148675       27512304     NM_015000     STK38L
7   chr12   27148675       27512304     NM_016551     TM7SF3
8   chr13  102888176      103225266  NM_001321932      FGF14
15  chr13  102888176      103225266     NR_036486  FGF14-IT1
16  chr13  102888176      103225266     NR_036487  FGF14-AS2
17  chr13  102888176      103225266     NR_125912  FGF14-AS1
18   chr3    2320056        2458954  NM_001206955      CNTN4,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  110529311      110703284  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr6  162627533      162918513     NM_013988         PARK2
1   chr7  143032665      143197553     NM_000083         CLCN1
2   chr7  143032665      143197553  NM_001278297       FAM131B
3   chr7  143032665      143197553  NM_001322263  LOC100507507
4   chr7  143032665      143197553     NM_003461           ZYX
5   chr7  143032665      143197553     NM_005232         EPHA1
7   chr7  143032665      143197553     NM_176883       TAS2R41
8   chr7  143032665      143197553     NM_177437       TAS2R60
9   chr7  143032665      143197553     NR_033897     EPHA1-AS1
10  chr7  143032665      143197553     NR_106952       MIR6892,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  110674912      110791314  NM_001099658     LRRN3
1  chr7  110674912      110791314  NM_001244606    IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr4   69300410       69444294     NM_001077       UGT2B17
1  chr4   69300410       69444294     NM_014058     TMPRSS11E
2  chr7   64057196       64273029  NM_001160183        ZNF138
3  chr7   64057196       64273029  NM_001282360        ZNF107
5  chr7   64057196       64273029     NR_077227  LOC100128885
7  chr7   64057196       64273029     NR_106898       MIR6839
8  chr7  133239330      133493341     NM_021807         EXOC4
9  chr7  133239330      133493341     NR_120513  LOC101928861,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr17   21338507       21516517  NM_001113434  C17orf51
1   chr9   28503557       28904691  NM_001258282    LINGO2
3   chr9   28503557       28904691     NR_030597    MIR876
4   chr9   28503557       28904691     NR_030618    MIR873,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  171337939      171643661     NM_000261        MYOC
1    chr1  171337939      171643661     NM_015172      PRRC2C
2   chr11   89077808       89251386  NM_001143837        NOX4
8   chr15   77845290       78374754  NM_001301186      LINGO1
17  chr15   77845290       78374754     NM_015079     TBC1D2B
19  chr15   77845290       78374754     NR_026998    LOC91450
20  chr15   77845290       78374754     NR_027024   LOC645752
21  chr15   77845290       78374754     NR_045123  LINGO1-AS1
22  chr15   77845290       78374754     NR_120361  LINGO1-AS2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr18     811932        1078594  NM_001099733   ADCYAP1
2   chr18     811932        1078594     NM_005433      YES1
3   chr20   25399414       25570016  NM_001318226      NINL
4   chr20   25399414       25570016     NM_021067     GINS1
5    chr4    9152449        9338373  NM_001242326  USP17L25
8    chr4    9152449        9338373  NM_001256852  USP17L10
9    chr4    9152449        9338373  NM_001256853  USP17L12
11   chr4    9152449        9338373  NM_001256854  USP17L11
14   chr4    9152449        9338373  NM_001256855  USP17L13
15   chr4    9152449        9338373  NM_001256857  USP17L17
16   chr4    9152449        9338373  NM_001256860  USP17L19
17   chr4    9152449        9338373  NM_001256861  USP17L20
18   chr4    9152449        9338373  NM_001256894  USP17L15
19   chr7   75900362       76006204  NM_001110199     SRRM3
20   chr7   75900362       76006204     NM_001540     HSPB1
21   chr7   75900362       76006204     NM_012479     YWHAG,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88933446       89044288  NM_001099338      NUTM2A
1   chr10   88933446       89044288  NM_001330112      FAM35A
3   chr10   88933446       89044288     NR_024397  NUTM2A-AS1
4   chr13   85975456       86589949     NM_032229     SLITRK6
5   chr13   85975456       86589949     NR_046989   LINC00351
6   chr15   20948615       21094402  NM_001277303      POTEB2
7   chr15   20948615       21094402     NM_207355      POTEB3
8   chr15   20948615       21094402     NR_027992      NBEAP1
9   chr15   20948615       21094402     NR_036062   MIR3118-2
11  chr15   21157653       21287088     NR_040094   LINC01193
12   chr5  109849817      110037997  NM_001039763     TMEM232
13   chr5  127796860      127994867     NM_001999        FBN2
14   chr9   80069841       80356818     NM_002072        GNAQ
15   chr9   80069841       80356818     NM_004297       GNA14
16   chr9   80069841       80356818     NR_121184   GNA14-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81430780       81765953  NM_001278495        NUTM2B
1   chr10   81430780       81765953     NM_003019         SFTPD
2   chr10   81430780       81765953     NR_002724         MBL1P
3   chr10   81430780       81765953     NR_027512       BEND3P3
4   chr10   81430780       81765953     NR_029407     LOC642361
5   chr10   81430780       81765953     NR_033857       BMS1P21
6   chr10   81430780       81765953     NR_120611    NUTM2B-AS1
9   chr12   16278595       16382031  NM_001170798       SLC15A5
10   chr5  117423858      117531232     NR_104997  LOC102467224
11   chr6  162635817      162740407     NM_013988         PARK2
12   chr9  116749926      116932984  NM_001318041        ZNF618
13   chr9  116749926      116932984     NM_001633          AMBP
14   chr9  116749926      116932984     NM_032888       COL27A1
15   chr9  116749926      116932984     NM_138424         KIF12,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48372828       48885568  NM_001005512    OR4A47
1  chr11   48372828       48885568  NM_001005513    OR4C45,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13  102935964      103251287  NM_001321932      FGF14
6   chr13  102935964      103251287     NM_003291       TPP2
8   chr13  102935964      103251287     NR_036486  FGF14-IT1
9   chr13  102935964      103251287     NR_036487  FGF14-AS2
10  chr13  102935964      103251287     NR_125912  FGF14-AS1
11  chr20   14741418       14844892     NM_080676    MACROD2
12   chr3  101121710      101299665  NM_001282803      SENP7
14   chr3  101121710      101299665  NM_001320399       PCNP
15   chr3  101121710      101299665     NM_017819    TRMT10C
16   chr3  101121710      101299665     NR_036433   FAM172BP,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr22   19887701       20272690     NM_000754       COMT
3   chr22   19887701       20272690  NM_001190326      DGCR8
4   chr22   19887701       20272690  NM_001243537    CCDC188
5   chr22   19887701       20272690  NM_001278639     RANBP1
8   chr22   19887701       20272690  NM_001282512     TXNRD2
9   chr22   19887701       20272690  NM_001283116     TANGO2
12  chr22   19887701       20272690     NM_001670      ARVCF
15  chr22   19887701       20272690     NM_013373     ZDHHC8
16  chr22   19887701       20272690     NM_022727     TRMT2A
17  chr22   19887701       20272690     NM_023004      RTN4R
18  chr22   19887701       20272690     NR_026919  LINC00896
19  chr22   19887701       20272690     NR_029706     MIR185
20  chr22   19887701       20272690     NR_031618    MIR1286
21  chr22   19887701       20272690     NR_031706    MIR1306
22  chr22   19887701       20272690     NR_037412    MIR3618
23  chr22   19887701       20272690     NR_038460  LOC284865
24  chr22   19887701       20272690     NR_039918    MIR4761
25  chr22   19887701       20272690     NR_106874    MIR6816,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3    1293752        1547763  NM_001289081     CNTN6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12831715       12940706  NM_001009611       PRAMEF4
1    chr1   12831715       12940706  NM_001013631      HNRNPCL1
2    chr1   12831715       12940706  NM_001080830      PRAMEF12
3    chr1   12831715       12940706  NM_001146181      HNRNPCL3
4    chr1   12831715       12940706  NM_001146344      PRAMEF11
5    chr1   12831715       12940706  NM_001294139       PRAMEF1
6    chr1   12831715       12940706  NM_001302551      HNRNPCL4
8    chr1   12831715       12940706     NM_023014       PRAMEF2
9   chr15   51455147       51557979     NM_031226       CYP19A1
10  chr15   51455147       51557979     NR_039863       MIR4713
11  chr18   24746879       24856744  NM_001256316         CHST9
12   chr2  110219868      110338427  NM_001099289        SH3RF3
13   chr2  110219868      110338427  NM_001321504        SEPT10
15   chr5     167853         563301  NM_001080478       LRRC14B
16   chr5     167853         563301  NM_001242412          AHRR
17   chr5     167853         563301  NM_001284351        SLC9A3
18   chr5     167853         563301     NM_004168          SDHA
19   chr5     167853         563301     NM_007277         EXOC3
20   chr5     167853         563301     NM_013232         PDCD6
21   chr5     167853         563301     NM_052909      PLEKHG4B
22   chr5     167853         563301     NM_145265       CCDC127
23   chr5     167853         563301     NR_024158        PP7080
24   chr5     167853         563301     NR_039661       MIR4456
26   chr5     167853         563301     NR_104613         HRAT5
27   chr5     167853         563301     NR_125375  LOC100288152
28   chr5     167853         563301     NR_126522     EXOC3-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   47835385       47945413  NM_001113498         MDGA2
1   chr7   64045458       64225186  NM_001282360        ZNF107
2   chr7   64045458       64225186     NR_077227  LOC100128885
4   chr7   64045458       64225186     NR_106898       MIR6839,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  245038506      245567970  NM_001143943        EFCAB2
2  chr1  245038506      245567970     NM_018012        KIF26B
4  chr1  245038506      245567970     NR_111907  LOC101928068
5  chr2  109884725      110051101  NM_001099289        SH3RF3
6  chr2  109884725      110051101     NR_036224       MIR4266,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67326622       67473230     NM_000695   ALDH3B2
1   chr11   67326622       67473230     NM_000852     GSTP1
3   chr11   67326622       67473230  NM_001166102    NDUFV1
4   chr11   67326622       67473230  NM_001243750     NUDT8
5   chr11   67326622       67473230     NM_005995     TBX10
6   chr11   67326622       67473230     NM_080658      ACY3
8   chr11   67326622       67473230     NR_033791    DOC2GP
9   chr11   67326622       67473230     NR_130935  C11orf72
10   chr5  109827117      109942489  NM_001039763   TMEM232
11   chr5  109827117      109942489     NR_031644  MIR548F3
12   chr7   19645360       19746141  NM_001002926   TWISTNB
13   chr7   19645360       19746141     NR_036101   MIR3146,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10  111154696      112453218  NM_001008541      MXI1
1   chr10  111154696      112453218     NM_001121      ADD3
2   chr10  111154696      112453218  NM_001134363     RBM20
5   chr10  111154696      112453218  NM_001324128   XPNPEP1
7   chr10  111154696      112453218     NM_004419     DUSP5
8   chr10  111154696      112453218     NM_005445      SMC3
9   chr10  111154696      112453218     NM_005871    SMNDC1
12  chr10  111154696      112453218     NR_038943  ADD3-AS1
13  chr20   40582436       40796001     NM_133170     PTPRT
14   chr3    1137681        1249193  NM_001289081     CNTN6,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr11   48313643       48717307  NM_001004702        OR4C3
1  chr11   48313643       48717307  NM_001004725        OR4S1
2  chr11   48313643       48717307  NM_001005512       OR4A47
3  chr11   48313643       48717307  NM_001005513       OR4C45
4  chr17   64579486       64703951     NM_002737        PRKCA
5  chr20   14619590       14913595     NM_080676      MACROD2
6  chr20   14619590       14913595     NR_037841  MACROD2-AS1
8   chr3  193122555      193262227     NM_032279      ATP13A4
9   chr9   22365050       22507094     NM_022160       DMRTA1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   41732265       42748602  NM_001099650        GXYLT1
1   chr12   41732265       42748602  NM_001143787        PPHLN1
3   chr12   41732265       42748602  NM_001164595        PDZRN4
4   chr12   41732265       42748602  NM_001190980          YAF2
7   chr12   41732265       42748602     NM_033114         ZCRB1
9   chr12   41732265       42748602     NR_107005       MIR7851
10  chr12   41732265       42748602     NR_135041  LOC101927038
11  chr14   55629140       55793105     NM_014750        DLGAP5
12  chr14   55629140       55793105     NM_017943        FBXO34
14   chr2  242501935      242615459  NM_001164356         THAP4
15   chr2  242501935      242615459  NM_001165031         DTYMK
17   chr2  242501935      242615459     NM_032515           BOK
18   chr2  242501935      242615459     NM_178326         ATG4B,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   68123329       68468998  NM_001127384     CTNNA3
2  chr16   78748001       78996998     NM_016373       WWOX
3  chr20   14701642       14811369     NM_080676    MACROD2
4   chr4  136809035      137074479     NR_103762  LINC00613
6   chr9   41448019       41609673  NM_001113541  SPATA31A5
7   chr9   41448019       41609673     NM_015667  SPATA31A7
8   chr9   41448019       41609673     NR_003528    ZNF658B
9   chr9   41448019       41609673     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0   chr1  193291365      193541953  NR_125789    LINC01031
1  chr13   83399131       84749489  NM_052910      SLITRK1
2  chr13   83399131       84749489  NR_046871    LINC00333
3  chr20   14752819       14923292  NM_080676      MACROD2
4  chr20   14752819       14923292  NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28600031       28896203     NR_033351       GOLGA8F
2   chr15   28600031       28896203     NR_033353       GOLGA8G
4   chr15   28600031       28896203     NR_039734     MIR4509-3
6    chr7  123475733      123884836  NM_001136002      TMEM229A
7    chr7  123475733      123884836  NM_001174044         SPAM1
10   chr7  123475733      123884836     NM_012269         HYAL4
11   chr7  123475733      123884836     NR_133947  LOC105375483,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   68753021       68985104  NM_001317184       CDH1
1  chr16   68753021       68985104     NM_024562     TANGO6
2  chr16   68753021       68985104     NR_106988  MIR7641-2
3  chr16   76340960       76450027  NM_001322181    CNTNAP4
5  chr22   32336104       32437148     NM_003405      YWHAH
6  chr22   32336104       32437148     NM_015372   C22orf24
7   chr9   31346776       31454625     NR_135134  LINC01243,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49590483       49733892  NM_001323575         AGBL4
1    chr1   49590483       49733892     NR_125988  LOC101929721
2   chr10   81457416       82114029     NM_000429         MAT1A
3   chr10   81457416       82114029  NM_001012973         PLAC9
4   chr10   81457416       82114029  NM_001269053         DYDC1
5   chr10   81457416       82114029  NM_001270042         DYDC2
6   chr10   81457416       82114029  NM_001270367       TMEM254
9   chr10   81457416       82114029  NM_001278407        ANXA11
11  chr10   81457416       82114029  NM_001278495        NUTM2B
13  chr10   81457416       82114029     NM_003019         SFTPD
15  chr10   81457416       82114029     NR_002724         MBL1P
16  chr10   81457416       82114029     NR_027431   TMEM254-AS1
17  chr10   81457416       82114029     NR_029407     LOC642361
18  chr10   81457416       82114029     NR_033857       BMS1P21
19  chr10   81457416       82114029     NR_038464     LINC00857
20  chr10   81457416       82114029     NR_120611    NUTM2B-AS1
23  chr10   81457416       82114029     NR_136612  LOC100130698
25  chr16   68537301       68704664  NM_001305204         ZFP90
27  chr16   68537301       68704664  NM_001317195          CDH3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   20661925       20762494  NM_001145004  GOLGA6L6
1  chr15   20661925       20762494     NR_036432   HERC2P3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   48871424       49299321  NM_001286238    SPATA6
1   chr1   48871424       49299321  NM_001302082     BEND5
2   chr1   48871424       49299321  NM_001323575     AGBL4
3  chr12  130245967      130436605     NM_133448  TMEM132D
4  chr15   65463193       65600580     NM_003613      CILP
5  chr15   65463193       65600580     NM_006660      CLPX
6  chr15   65463193       65600580     NM_017851    PARP16,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143126011      143474853     NR_110761  LOC102723769
1  chr16   22182407       22667667  NM_001135865        NPIPB5
2  chr16   22182407       22667667  NM_001258033        POLR3E
3  chr16   22182407       22667667     NM_001802          CDR2
4  chr16   22182407       22667667     NM_013302         EEF2K
5  chr16   22182407       22667667     NR_003676     LOC653786
6  chr16   22182407       22667667     NR_027154        SMG1P1
7  chr16   22182407       22667667     NR_027460        RRN3P3
8  chr16   22182407       22667667     NR_136333       MFSD13B
9   chr7   82825072       83489993  NM_001178129        SEMA3E,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   98254142       98362541     NR_024172  LINC00923
1    chr3  172086404      172243415  NM_001135095     FNDC3B
2    chr3  172086404      172243415  NM_001190942    TNFSF10
4    chr3  172086404      172243415     NM_004122       GHSR
7    chr4  169201640      169660594  NM_001012967     DDX60L
8    chr4  169201640      169660594  NM_001166108      PALLD
11   chr4  169201640      169660594     NM_017631      DDX60
12   chr6  162238206      163641978  NM_001080378      PACRG
14   chr6  162238206      163641978     NM_013988      PARK2
15   chr6  162238206      163641978     NR_110871  PACRG-AS2
17   chr6  162238206      163641978     NR_122120  PACRG-AS3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   68055570       68529576  NM_001127384    CTNNA3
2   chr17   21875375       22025730  NM_001190452  MTRNR2L1
3   chr17   21875375       22025730     NR_027084  FLJ36000
4    chr5  110324369      110755758  NM_001323374     CAMK4
8    chr5  110324369      110755758     NM_033035      TSLP
10   chr5  110324369      110755758     NM_139281     WDR36,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr9   39073642       39259493  NM_033655   CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr4   68949967       69133809     NM_182502     TMPRSS11B
1   chr4   68949967       69133809     NM_207407     TMPRSS11F
2   chr4   68949967       69133809     NR_015446        FTLP10
3   chr4   68949967       69133809     NR_104048   TMPRSS11BNL
4   chr7    9259174        9693458     NR_002790          PER4
5   chr7   64202566       64453302  NM_001007253        ERV3-1
6   chr7   64202566       64453302  NM_001160183        ZNF138
7   chr7   64202566       64453302     NM_015852        ZNF117
8   chr7   64202566       64453302     NM_021148        ZNF273
10  chr8     206458         500534  NM_001256113          TDRP
11  chr8     206458         500534     NM_012173        FBXO25
13  chr8     206458         500534     NR_103537        FAM87A
14  chr9  102159965      102701226     NM_017919         STX17
15  chr9  102159965      102701226     NM_173199         NR4A3
17  chr9  102159965      102701226     NR_038853     STX17-AS1
18  chr9  102159965      102701226     NR_109802  LOC101928438,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15  100097249      100213842  NM_001130928      MEF2A
2   chr22   20107492       20223492  NM_001243537    CCDC188
3   chr22   20107492       20223492  NM_001278639     RANBP1
6   chr22   20107492       20223492     NM_013373     ZDHHC8
7   chr22   20107492       20223492     NR_026919  LINC00896
8   chr22   20107492       20223492     NR_038460  LOC284865
9    chr4   69288902       69398714     NM_014058  TMPRSS11E
10   chr9     190573         448042  NM_001190458      DOCK8
11   chr9     190573         448042     NM_152569    C9orf66,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14699912       14871411     NM_080676      MACROD2
1  chr20   14699912       14871411     NR_037841  MACROD2-AS1
2   chr7  110541697      110893478  NM_001099658        LRRN3
3   chr7  110541697      110893478  NM_001244606       IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   81675036       82123007  NM_001244984         SEL1L
1   chr14   81675036       82123007  NM_001256430         STON2
2   chr14   81675036       82123007  NM_001278940        GTF2A1
6   chr14   81675036       82123007     NR_109999  LOC100506700
7   chr14   81675036       82123007     NR_110074     LINC01467
8   chr14   81675036       82123007     NR_135252  LOC101928504
9   chr16    8655195        8812206     NM_000663          ABAT
11  chr16    8655195        8812206     NM_024109       METTL22,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  132038314      132141981  NM_001048209        NTM
3   chr16   15414782       15601653  NM_001128423     MPV17L
4   chr16   15414782       15601653  NM_001142469   C16orf45
5   chr16   15414782       15601653  NM_001277325     NPIPA5
7    chr4   69115786       69608572  NM_001031732     YTHDC1
8    chr4   69115786       69608572     NM_001076    UGT2B15
9    chr4   69115786       69608572     NM_001077    UGT2B17
10   chr4   69115786       69608572     NM_014058  TMPRSS11E
11   chr4  169187458      169310593  NM_001012967     DDX60L
12   chr4  169187458      169310593     NM_017631      DDX60
13   chr7   14824562       14999200     NM_004080       DGKB,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   30225828       30354965  NM_001301025      TJP1, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63033903       63766743     NR_047029  LINC00448
3   chr13   63033903       63766743     NR_126409  LINC00376
4   chr16   15446812       15703273  NM_001128423     MPV17L
5   chr16   15446812       15703273  NM_001142469   C16orf45
6   chr16   15446812       15703273  NM_001184998   KIAA0430
7   chr16   15446812       15703273  NM_001277325     NPIPA5
9   chr19   33173592       33684142  NM_001105570     NUDT19
10  chr19   33173592       33684142  NM_001110822     TDRD12
11  chr19   33173592       33684142  NM_001300978     FAAP24
12  chr19   33173592       33684142     NM_014270     SLC7A9
13  chr19   33173592       33684142     NM_032816      CEP89
14  chr19   33173592       33684142     NM_033103      RHPN2
15  chr19   33173592       33684142     NM_173479      WDR88
16  chr19   33173592       33684142     NR_135270    GPATCH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68554865       68712183  NM_001127384        CTNNA3
2   chr10   68554865       68712183     NM_178011        LRRTM3
3   chr10   68554865       68712183     NR_111911  LOC101928961
4   chr16   29738661       29968323  NM_001114099        SEZ6L2
5   chr16   29738661       29968323  NM_001256269         KIF22
7   chr16   29738661       29968323  NM_001256443         PRRT2
8   chr16   29738661       29968323  NM_001276275           MAZ
9   chr16   29738661       29968323  NM_001286585         CDIPT
10  chr16   29738661       29968323  NM_001293204           MVP
13  chr16   29738661       29968323     NM_024516         PAGR1
14  chr16   29738661       29968323     NM_152338          ZG16
15  chr16   29738661       29968323     NM_175900      C16orf54
16  chr16   29738661       29968323     NM_178863        KCTD13
17  chr16   29738661       29968323     NM_181718        ASPHD1
18  chr16   29738661       29968323     NR_015396     CDIPT-AS1
20   chr9   28714154       30199339  NM_001258282        LINGO2
22   chr9   28714154       30199339     NR_030597        MIR876
23   chr9   28714154       30199339     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  121955600      122057720  NM_001001786          BLID
1   chr11  121955600      122057720     NR_024430      MIR100HG
2   chr11  121955600      122057720     NR_029477     MIRLET7A2
3   chr11  121955600      122057720     NR_029515        MIR100
4   chr11  121955600      122057720     NR_029671      MIR125B1
15  chr15   28537647       28778665     NM_004667         HERC2
16  chr15   28537647       28778665     NR_033351       GOLGA8F
18  chr15   28537647       28778665     NR_033353       GOLGA8G
20  chr15   28537647       28778665     NR_039734     MIR4509-3
22   chr2  233090882      233192751  NM_001257281        DIS3L2
24   chr5  152256526      152631885     NR_109877     LINC01470
25   chr6    5172500        5320880  NM_001164840         LYRM4
27   chr6    5172500        5320880  NM_001318872         FARS2
30   chr6    5172500        5320880     NR_126015     LYRM4-AS1
32   chr7  142989325      143093208     NM_000083         CLCN1
33   chr7  142989325      143093208     NM_001224         CASP2
34   chr7  142989325      143093208  NM_001278297       FAM131B
35   chr7  142989325      143093208  NM_001322263  LOC100507507
36   chr7  142989325      143093208     NM_003461           ZYX
37   chr7  142989325      143093208     NM_005232         EPHA1
40   chr7  142989325      143093208     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   15040856       15429036  NM_001270767          NTAN1
1   chr16   15040856       15429036  NM_001285445         PDXDC1
6   chr16   15040856       15429036  NM_001301064           RRN3
8   chr16   15040856       15429036     NM_006985         NPIPA1
9   chr16   15040856       15429036     NR_037466      MIR3180-4
10  chr16   15040856       15429036     NR_106775      MIR6511B1
11  chr16   15040856       15429036     NR_106965      MIR6511B2
12  chr16   15040856       15429036     NR_123721  PKD1P6-NPIPP1
14  chr16   15040856       15429036     NR_125434   LOC100505915
15   chr5   99384608       99955902     NM_198507        FAM174A
16   chr5   99384608       99955902     NR_027503   LOC100133050
17   chr5  104427545      104544252     NR_000039        RAB9BP1
18   chr6   65584426       65710392  NM_001142800            EYS
19   chr7   71505839       71611605  NM_001017440          CALN1
21   chr7  110692934      110833319  NM_001099658          LRRN3
22   chr7  110692934      110833319  NM_001244606         IMMP2L
24   chr8    7185590        7633561  NM_001040705       DEFB107B
25   chr8    7185590        7633561  NM_001081551       DEFB103A
26   chr8    7185590        7633561  NM_001164457        ZNF705G
27   chr8    7185590        7633561  NM_001205266         DEFB4B
28   chr8    7185590        7633561  NM_001256873        USP17L1
29   chr8    7185590        7633561  NM_001256874        USP17L4
30   chr8    7185590        7633561  NM_001282478        PRR23D2
31   chr8    7185590        7633561  NM_001282479        PRR23D1
32   chr8    7185590        7633561     NM_058200        SPAG11B
36   chr8    7185590        7633561     NM_080389       DEFB104A
37   chr8    7185590        7633561     NM_152250       DEFB105A
38   chr8    7185590        7633561     NM_152251       DEFB106A
39   chr8    7185590        7633561     NR_027423         FAM66B
40   chr8    7185590        7633561     NR_046343       FAM90A7P
42   chr8    7185590        7633561     NR_046351      FAM90A10P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21650477       21795902     NM_020366       RPGRIP1
1   chr14   21650477       21795902     NM_031314        HNRNPC
2   chr14   21650477       21795902     NR_038970     LINC00641
4   chr14   61832492       62227316  NM_001243084         HIF1A
5   chr14   61832492       62227316     NM_006255         PRKCH
7   chr14   61832492       62227316     NR_039985      FLJ22447
8   chr14   61832492       62227316     NR_045406     HIF1A-AS2
9   chr14   61832492       62227316     NR_047116     HIF1A-AS1
10  chr14   61832492       62227316     NR_110416  LOC101927780
12  chr14   61832492       62227316     NR_144368  LOC105370526
13   chr8    6967139        7196801  NM_001256873       USP17L1
14   chr8    6967139        7196801  NM_001256874       USP17L4
15   chr8    6967139        7196801     NR_003668    DEFB109P1B
16   chr8    6967139        7196801     NR_027000     LINC00965
19   chr8    6967139        7196801     NR_027423        FAM66B,    chrom  cnv_start  cnv_terminate    tx_name          gene_name
0  chr22   16979601       17170239  NM_014406             CCT8L2
1  chr22   16979601       17170239  NR_001591             TPTEP1
2  chr22   16979601       17170239  NR_040115  ANKRD62P1-PARP4P3
3   chr5   17718505       17909672  NR_134286          LOC646241,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   88974579       89107829  NM_001099338        NUTM2A
1  chr10   88974579       89107829     NR_024397    NUTM2A-AS1
2  chr10   88974579       89107829     NR_029408     LINC00863
4  chr22   17193588       17315383     NM_175878          XKR3
5  chr22   17193588       17315383     NR_003607       HSFY1P1
6  chr22   17193588       17315383     NR_134584  LOC101929350
7   chr5  120508221      120687949     NR_104999  LOC102467226
8   chr6  162879484      162991546     NM_013988         PARK2
9   chr9   24418316       24607113  NM_001271706        IZUMO3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  135241507      135351593     NM_000773        CYP2E1
1   chr10  135241507      135351593     NR_002934        SCART1
2   chr16   83971687       84122663  NM_001080442       SLC38A8
3   chr16   83971687       84122663     NM_003791        MBTPS1
4   chr16   83971687       84122663     NM_019065        NECAB2
5   chr16   83971687       84122663     NM_182981        OSGIN1
6   chr20   10862042       12454672  NM_001282550         BTBD3
9   chr20   10862042       12454672     NR_038972     LOC339593
10  chr20   10862042       12454672     NR_109866  LOC101929413
11  chr20   10862042       12454672     NR_110635     LINC00687
12   chr9   28601824       28737528  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   58505964       59245195     NR_037490       MIR3924
1   chr15   29772387       30004470  NM_001301025          TJP1
4   chr15   29772387       30004470     NM_015307      FAM189A1
5   chr15   29772387       30004470     NR_135221  LOC100130111
6   chr16   21546320       22020326  NM_001077180        METTL9
7   chr16   21546320       22020326  NM_001161683          OTOA
8   chr16   21546320       22020326  NM_001164579      C16orf52
10  chr16   21546320       22020326  NM_001310148        NPIPB4
11  chr16   21546320       22020326     NM_003366        UQCRC2
12  chr16   21546320       22020326     NM_005849         IGSF6
15  chr16   21546320       22020326     NM_173806         PDZD9
16  chr16   21546320       22020326     NR_003370        RRN3P1
17  chr16   21546320       22020326     NR_110930  LOC101927814
18   chr4  128477885      128658027  NM_001318467      SLC25A31
19   chr4  128477885      128658027     NM_015693          INTU
20   chr6   90245321       90352991  NM_001242809        ANKRD6
23   chr6   90245321       90352991     NM_014611          MDN1
24   chr6   90245321       90352991     NM_020466         LYRM2
26   chr6   90245321       90352991     NR_111915  LOC101929057,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   87363629       87562438  NM_001134492    HS2ST1
1    chr1   87363629       87562438     NM_004261   SELENOF
3   chr11   89072399       89215123  NM_001143837      NOX4
8   chr16   15378422       15508181  NM_001128423    MPV17L
9   chr16   15378422       15508181  NM_001277325    NPIPA5
10  chr21   22546708       22984766     NM_004540     NCAM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27104464       28630163  NM_001029874         REP15
1   chr12   27104464       28630163  NM_001080406      C12orf71
2   chr12   27104464       28630163  NM_001145010         SMCO2
3   chr12   27104464       28630163  NM_001146221        MANSC4
4   chr12   27104464       28630163  NM_001171887      FGFR1OP2
6   chr12   27104464       28630163  NM_001190864        MRPS35
7   chr12   27104464       28630163  NM_001248002        ARNTL2
8   chr12   27104464       28630163  NM_001271811         MED21
9   chr12   27104464       28630163  NM_001330367        CCDC91
10  chr12   27104464       28630163     NM_002820         PTHLH
11  chr12   27104464       28630163     NM_015000        STK38L
12  chr12   27104464       28630163     NM_016551        TM7SF3
13  chr12   27104464       28630163     NM_020782        KLHL42
14  chr12   27104464       28630163     NM_177444       PPFIBP1
18  chr12   27104464       28630163     NR_109975    ARNTL2-AS1
19  chr16   68546141       68683566  NM_001305204         ZFP90
21  chr16   68546141       68683566  NM_001317195          CDH3
22   chr3   72692721       72915488     NM_018130          SHQ1
23   chr3   72692721       72915488     NR_135531  LOC105377162,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   40295319       40511207  NM_001258419    LRRC4C
2    chr2  153077376      153219011     NM_052905     FMNL2
3   chr22   19880206       20127694     NM_000754      COMT
6   chr22   19880206       20127694  NM_001190326     DGCR8
7   chr22   19880206       20127694  NM_001278639    RANBP1
10  chr22   19880206       20127694  NM_001282512    TXNRD2
11  chr22   19880206       20127694  NM_001283116    TANGO2
14  chr22   19880206       20127694     NM_001670     ARVCF
17  chr22   19880206       20127694     NM_013373    ZDHHC8
18  chr22   19880206       20127694     NM_022727    TRMT2A
19  chr22   19880206       20127694     NR_029706    MIR185
20  chr22   19880206       20127694     NR_031706   MIR1306
21  chr22   19880206       20127694     NR_037412   MIR3618
22  chr22   19880206       20127694     NR_039918   MIR4761
23  chr22   19880206       20127694     NR_106874   MIR6816,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14830206       14963456     NM_080676      MACROD2
1  chr20   14830206       14963456     NR_037841  MACROD2-AS1
3   chr7  108451713      108567713  NM_001024607      C7orf66
4   chr7  110697683      110899499  NM_001099658        LRRN3
5   chr7  110697683      110899499  NM_001244606       IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr3  156024176      156177049  NM_001308217      KCNAB1
5  chr3  156024176      156177049     NR_046618  KCNAB1-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   37403817       37680011     NM_052997   ANKRD30A
1  chr10   37403817       37680011     NR_104061  LINC00993
2   chr5    5939793        6585095  NM_001145161    UBE2QL1
3   chr5    5939793        6585095     NM_032286      MED10
4   chr5    5939793        6585095     NR_024423  LINC01018
6   chr5    5939793        6585095     NR_028351   FLJ33360,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   26673433       26950827     NM_002515     NOVA1
2  chr22   17233477       17393745     NM_175878      XKR3
3  chr22   17233477       17393745     NR_003607   HSFY1P1
4   chr3    2321788        2520442  NM_001206955     CNTN4
6   chr4  169209665      169345702  NM_001012967    DDX60L
8   chr4  169209665      169345702     NM_017631     DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   54231926       56705374     NM_000242          MBL2
1   chr10   54231926       56705374  NM_001142770        PCDH15
4   chr10   54231926       56705374     NR_031642      MIR548F1
5   chr10   54231926       56705374     NR_134503  LOC105378311
6   chr15   28126877       28302301     NM_000275          OCA2
8   chr16   76583483       76708312  NM_001322181       CNTNAP4
10  chr16   76583483       76708312     NR_110934  LOC101928203
11   chr2   25484741       25724282  NM_001256304          DTNB
13   chr2   25484741       25724282  NM_001320892        DNMT3A
19   chr2   25484741       25724282     NR_031570       MIR1301
20   chr7     107138         233103     NM_020223        FAM20C
21   chr7     107138         233103     NR_108065  LOC100507642
22   chr7     107138         233103     NR_134324  LOC105375115
23   chr7     107138         233103     NR_134325  LOC102723672
24   chr7  110586065      110710007  NM_001244606        IMMP2L, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   47745871       47914885  NM_001113498         MDGA2
3  chr20   14810161       15026925     NM_080676       MACROD2
4  chr20   14810161       15026925     NR_037841   MACROD2-AS1
6   chr6  145839110      146071193     NM_005670         EPM2A
7   chr6  145839110      146071193     NR_038246  LOC100507557
8   chr6  162381438      162528751     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr13   41377354       41628342  NM_001145353         ELF1
1   chr13   41377354       41628342     NM_014252     SLC25A15
3   chr13   41377354       41628342     NR_003365      SUGT1P3
4   chr13   41377354       41628342     NR_030352       MIR621
5   chr13   41377354       41628342     NR_038259      TPTE2P5
6   chr19    1838222        1965448  NM_001130111      ABHD17A
7   chr19    1838222        1965448     NM_001319      CSNK1G2
8   chr19    1838222        1965448  NM_001329539       SCAMP4
9   chr19    1838222        1965448     NM_020695        REXO1
10  chr19    1838222        1965448     NM_031918        KLF16
11  chr19    1838222        1965448     NM_138422        ADAT3
12  chr19    1838222        1965448     NR_033400  CSNK1G2-AS1
13   chr3   65790634       66041370  NM_001033057        MAGI1
15   chr3   65790634       66041370     NR_046575    MAGI1-AS1
16   chr5   82386472       82494823  NM_001318012        XRCC4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   20146646       20261456     NM_023004         RTN4R
1   chr22   20146646       20261456     NR_026919     LINC00896
2   chr22   20146646       20261456     NR_031618       MIR1286
3   chr22   20146646       20261456     NR_038460     LOC284865
4    chr4   81867547       82250572     NM_001201          BMP3
5    chr4   81867547       82250572  NM_001206997       C4orf22
6    chr4   81867547       82250572  NM_001282483         PRKG2
8    chr4   81867547       82250572     NR_125908  LOC101928942
9    chr4  184404603      184582745  NM_001291959          ING2
10   chr4  184404603      184582745  NM_001307922         RWDD4
12   chr4  184404603      184582745     NM_021942      TRAPPC11
13   chr4  184404603      184582745     NR_033995     LOC389247,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   95755369       96165794  NM_001261833      JRKL
1   chr11   95755369       96165794  NM_001318737    CCDC82
3   chr11   95755369       96165794     NM_032427     MAML2
4   chr11   95755369       96165794     NR_036125  MIR1260B
5   chr14   47838106       47998374  NM_001113498     MDGA2
6   chr15  100146471      100291908  NM_001130928     MEF2A
7   chr15  100146471      100291908  NM_001284417    LYSMD4
10   chr6   45026197       45212121  NM_001261823    SUPT3H
11   chr6   45026197       45212121     NR_030313    MIR586,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12825728       12955168  NM_001009611    PRAMEF4
1    chr1   12825728       12955168  NM_001013631   HNRNPCL1
2    chr1   12825728       12955168  NM_001080830   PRAMEF12
3    chr1   12825728       12955168  NM_001146181   HNRNPCL3
4    chr1   12825728       12955168  NM_001146344   PRAMEF11
5    chr1   12825728       12955168  NM_001294139    PRAMEF1
6    chr1   12825728       12955168  NM_001302551   HNRNPCL4
8    chr1   12825728       12955168     NM_023014    PRAMEF2
9   chr12   62447103       62972832  NM_001252079      USP15
10  chr12   62447103       62972832  NM_001278469       MON2
12  chr12   62447103       62972832     NM_178539    FAM19A2
13  chr12   62447103       62972832     NR_106740    MIR6125
14  chr14   47854228       48093141  NM_001113498      MDGA2
15  chr16   69959911       70157918  NM_001136214    CLEC18A
16  chr16   69959911       70157918  NM_001270453       WWP2
19  chr16   69959911       70157918     NM_017990       PDPR
22  chr16   69959911       70157918     NR_003610    PDXDC2P
23  chr16   69959911       70157918     NR_029681     MIR140
24  chr16   69959911       70157918     NR_036265  MIR1972-2
25   chr2   51989493       52112754     NR_135237  LOC730100,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   55760999       55981303  NM_001142770    PCDH15
3   chr11   48417022       48621034  NM_001005512    OR4A47
4   chr11   89666146       90550354  NM_001105522  TRIM49D2
5   chr11   89666146       90550354  NM_001136486    TRIM64
6   chr11   89666146       90550354  NM_001143975    UBTFL1
7   chr11   89666146       90550354  NM_001144073   CHORDC1
8   chr11   89666146       90550354  NM_001195234   TRIM49C
9   chr11   89666146       90550354  NM_001206627  TRIM49D1
10  chr11   89666146       90550354     NM_005467   NAALAD2
11  chr11   89666146       90550354     NR_028346  TRIM53AP
12  chr11   89666146       90550354     NR_039711   MIR4490
13  chr11   89666146       90550354     NR_104190  DISC1FP1
14   chr2  193631186      193893289     NR_002769    PCGEM1
15   chr5    3583073        4197566     NM_024337      IRX1
16   chr6  162848379      163164319  NM_001080378     PACRG
18   chr6  162848379      163164319     NM_013988     PARK2
19   chr7  110556716      110956292  NM_001099658     LRRN3
20   chr7  110556716      110956292  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81522965       81918413  NM_001012973         PLAC9
1   chr10   81522965       81918413  NM_001270367       TMEM254
4   chr10   81522965       81918413  NM_001278407        ANXA11
7   chr10   81522965       81918413     NM_003019         SFTPD
9   chr10   81522965       81918413     NR_002724         MBL1P
10  chr10   81522965       81918413     NR_027431   TMEM254-AS1
11  chr10   81522965       81918413     NR_029407     LOC642361
12  chr10   81522965       81918413     NR_033857       BMS1P21
13  chr10   81522965       81918413     NR_120611    NUTM2B-AS1
17  chr16   21516063       22182504  NM_001077180        METTL9
18  chr16   21516063       22182504  NM_001161683          OTOA
19  chr16   21516063       22182504  NM_001164579      C16orf52
21  chr16   21516063       22182504  NM_001310148        NPIPB4
22  chr16   21516063       22182504     NM_003366        UQCRC2
23  chr16   21516063       22182504     NM_005849         IGSF6
26  chr16   21516063       22182504     NM_173615         VWA3A
27  chr16   21516063       22182504     NM_173806         PDZD9
28  chr16   21516063       22182504     NR_002594      SLC7A5P2
29  chr16   21516063       22182504     NR_003370        RRN3P1
30  chr16   21516063       22182504     NR_049833     MIR3680-2
31  chr16   21516063       22182504     NR_110930  LOC101927814
32   chr2   97210678       97319536  NM_001115016        KANSL3
33   chr2   97210678       97319536  NM_001293083        FER1L5
34   chr2   97210678       97319536  NM_001319085        ARID5A
37  chr20   14707654       14814047     NM_080676       MACROD2
38   chr3    3871232        4100451  NM_001324189         LRRN1
39   chr3  162847964      163034179     NR_033945     LINC01192
40   chr9    9845182        9949497     NM_002839         PTPRD
41   chr9   11968353       12721706     NM_000550         TYRP1
42   chr9   11968353       12721706     NR_125775   LURAP1L-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   99240935       99591405  NM_001243270     CNTN5
3   chr6  161944034      162132696     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   95763375       96024534  NM_001301829         ABCC4
2   chr14   81657988       81887207  NM_001256430         STON2
3   chr14   81657988       81887207  NM_001278940        GTF2A1
6   chr14   81657988       81887207     NR_003021       SNORA79
7   chr14   81657988       81887207     NR_135252  LOC101928504
8   chr15   28711022       28813957     NR_033351       GOLGA8F
9   chr15   28711022       28813957     NR_033353       GOLGA8G
10  chr15   28711022       28813957     NR_039734     MIR4509-3
11  chr15   98216556       98561010     NM_183376        ARRDC4
12  chr15   98216556       98561010     NR_024172     LINC00923
13  chr17   47840066       48314706     NM_000088        COL1A1
14  chr17   47840066       48314706  NM_001077503          TAC4
15  chr17   47840066       48314706  NM_001199158          KAT7
16  chr17   47840066       48314706  NM_001199898          PDK2
19  chr17   47840066       48314706  NM_001242791      FLJ45513
20  chr17   47840066       48314706  NM_001257359        SAMD14
21  chr17   47840066       48314706     NM_001934          DLX4
22  chr17   47840066       48314706     NM_002204         ITGA3
24  chr17   47840066       48314706     NM_005220          DLX3
25  chr17   47840066       48314706     NM_030802       FAM117A
26  chr17   47840066       48314706     NM_032595       PPP1R9B
28  chr17   47840066       48314706     NR_024193         HILS1
29  chr17   47840066       48314706     NR_038230     LOC284080
30  chr17   47840066       48314706     NR_110806  LOC101927230
31  chr17   47840066       48314706     NR_135553          SGCA
32  chr17   47989178       48134371     NM_001934          DLX4
33  chr17   47989178       48134371     NM_002204         ITGA3
34  chr17   47989178       48134371     NM_005220          DLX3
36  chr17   47989178       48134371     NR_038230     LOC284080
37   chr7  146490030      146691300     NM_014141       CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr17   47815714       48131890  NM_001077503       TAC4
1   chr17   47815714       48131890  NM_001199158       KAT7
2   chr17   47815714       48131890  NM_001242791   FLJ45513
3   chr17   47815714       48131890     NM_001934       DLX4
4   chr17   47815714       48131890     NM_005220       DLX3
5   chr17   47815714       48131890     NM_030802    FAM117A
7   chr17   47815714       48131890     NR_038230  LOC284080
8    chr7  110619146      111579729  NM_001099658      LRRN3
9    chr7  110619146      111579729  NM_001244606     IMMP2L
10   chr7  110619146      111579729     NM_014705      DOCK4
12   chr7  110619146      111579729     NR_103806  DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   68544895       68843496  NM_001305204         ZFP90
2   chr16   68544895       68843496  NM_001317184          CDH1
3   chr16   68544895       68843496  NM_001317195          CDH3
4   chr16   68544895       68843496     NR_106988     MIR7641-2
5    chr9   41921111       42258007     NR_003670        FGF7P3
6    chr9   41921111       42258007     NR_015363         GLIDR
9    chr9   41921111       42258007     NR_126048  LOC102724238
10   chr9   41921111       42258007     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37427562       38831334  NM_001190489      MTRNR2L7
1   chr10   37427562       38831334  NM_001267597        ZNF248
4   chr10   37427562       38831334  NM_001324177        ZNF33A
5   chr10   37427562       38831334  NM_001324246        ZNF37A
9   chr10   37427562       38831334     NM_052997      ANKRD30A
10  chr10   37427562       38831334     NM_145011         ZNF25
11  chr10   37427562       38831334     NR_003086     HSD17B7P2
12  chr10   37427562       38831334     NR_024497     LINC00999
13  chr10   37427562       38831334     NR_024524  LOC100129055
14  chr10   37427562       38831334     NR_027269       SEPT7P9
15  chr10   37427562       38831334     NR_051997      ZNF33BP1
16  chr10   37427562       38831334     NR_104061     LINC00993
19  chr20   40581597       40837407     NM_133170         PTPRT
20   chr5   20460637       20657756  NM_001291956         CDH18
21   chr9   39107110       40232542  NM_001085452     SPATA31A1
23   chr9   39107110       40232542     NM_033655       CNTNAP3
24   chr9   39107110       40232542     NR_003528       ZNF658B
25   chr9   39107110       40232542     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  215760271      215872977  NM_001319294         KCTD3
1    chr1  215760271      215872977     NM_206933         USH2A
2   chr11   67282597       67426022     NM_000852         GSTP1
3   chr11   67282597       67426022  NM_001166102        NDUFV1
4   chr11   67282597       67426022  NM_001243750         NUDT8
5   chr11   67282597       67426022  NM_001318496         CABP2
6   chr11   67282597       67426022     NM_005995         TBX10
7   chr11   67282597       67426022     NM_080658          ACY3
9   chr11   67282597       67426022     NR_033791        DOC2GP
10  chr11   67282597       67426022     NR_130935      C11orf72
11  chr18   35081332       35288306     NM_020180         CELF4
12  chr18   35081332       35288306     NR_036202       MIR4318
13  chr21   29425274       30144431     NR_026552     LINC00161
14  chr21   29425274       30144431     NR_126010     LOC284825
16  chr21   29425274       30144431     NR_126012  LOC101927973
17   chr7   79038738       79247405     NM_012301         MAGI2
18   chr7   79038738       79247405     NR_038343     MAGI2-AS3
21   chr9   31329498       32754764  NM_001195622        TOPORS
22   chr9   31329498       32754764  NM_001199987        NDUFB6
23   chr9   31329498       32754764  NM_001278352          ACO1
24   chr9   31329498       32754764     NM_014314         DDX58
25   chr9   31329498       32754764     NM_153809         TAF1L
26   chr9   31329498       32754764     NR_033991    TOPORS-AS1
29   chr9   31329498       32754764     NR_135134     LINC01243,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81503241       81780635     NM_003019         SFTPD
1   chr10   81503241       81780635     NR_002724         MBL1P
2   chr10   81503241       81780635     NR_029407     LOC642361
3   chr10   81503241       81780635     NR_033857       BMS1P21
4   chr10   81503241       81780635     NR_120611    NUTM2B-AS1
7   chr11   83466753       83620763  NM_001142699          DLG2
11  chr16   68564609       68816162  NM_001305204         ZFP90
13  chr16   68564609       68816162  NM_001317184          CDH1
14  chr16   68564609       68816162  NM_001317195          CDH3
15  chr16   68564609       68816162     NR_106988     MIR7641-2
16  chr16   76342109       76482174  NM_001322181       CNTNAP4
18   chr7      74133         238498     NM_020223        FAM20C
19   chr7      74133         238498     NR_108065  LOC100507642
20   chr7      74133         238498     NR_134324  LOC105375115
21   chr7      74133         238498     NR_134325  LOC102723672,     chrom  cnv_start  cnv_terminate    tx_name     gene_name
0    chr1  181410828      181573434  NM_000721       CACNA1E
1   chr10   37387275       37496342  NM_052997      ANKRD30A
2   chr14   26947968       29067097  NM_002515         NOVA1
4   chr14   26947968       29067097  NR_036193       MIR4307
5   chr14   26947968       29067097  NR_039992     LINC00645
6   chr14   26947968       29067097  NR_110033  LOC101927062
7   chr14   26947968       29067097  NR_110041     MIR4307HG
8   chr14   26947968       29067097  NR_110556  LOC102724890
9   chr14   26947968       29067097  NR_130461       MIR3171
10  chr20   14631477       14826387  NM_080676       MACROD2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   16568919       16668938     NM_018994     FBXO42
1   chr12   71600445       72806525  NM_001277227       LGR5
2   chr12   71600445       72806525     NM_013381      TRHDE
3   chr12   71600445       72806525     NM_014999      RAB21
4   chr12   71600445       72806525     NM_018279     TMEM19
5   chr12   71600445       72806525     NM_031435      THAP2
6   chr12   71600445       72806525     NM_144982     ZFC3H1
7   chr12   71600445       72806525     NM_173353       TPH2
8   chr12   71600445       72806525     NR_024072     MRS2P2
9   chr12   71600445       72806525     NR_026836  TRHDE-AS1
11  chr12   71600445       72806525     NR_027449    TBC1D15
12   chr4   69173546       69296681  NM_001031732     YTHDC1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  110905495      111029881  NM_001244606    IMMP2L
2  chr9    1297824        2071901  NM_001289396   SMARCA2,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr7  110538282      110815189  NM_001099658      LRRN3
1  chr7  110538282      110815189  NM_001244606     IMMP2L
3  chr7  110621947      110835857  NM_001099658      LRRN3
4  chr7  110621947      110835857  NM_001244606     IMMP2L
6  chr9   30368276       30610129     NR_046204  LINC01242
7  chr9   30390697       30536804     NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   41378941       41515450  NM_001145353       ELF1
1   chr13   41378941       41515450     NM_014252   SLC25A15
3   chr13   41378941       41515450     NR_003365    SUGT1P3
4   chr13   41378941       41515450     NR_030352     MIR621
5   chr13   41378941       41515450     NR_038259    TPTE2P5
6    chr4   66429595       67590088  NM_001281766      EPHA5
9    chr4   66429595       67590088     NR_031673   MIR1269A
10   chr4   66429595       67590088     NR_034138  EPHA5-AS1,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr8  111870534      111993029  NR_125417  LINC01608
1  chr9    9985372       10142227  NM_002839      PTPRD,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   12803528       12927475  NM_001013631  HNRNPCL1
1   chr1   12803528       12927475  NM_001080830  PRAMEF12
2   chr1   12803528       12927475  NM_001146181  HNRNPCL3
3   chr1   12803528       12927475  NM_001146344  PRAMEF11
4   chr1   12803528       12927475  NM_001294139   PRAMEF1
5   chr1   12803528       12927475  NM_001302551  HNRNPCL4
7   chr1   12803528       12927475     NM_023014   PRAMEF2
8   chr1   12803528       12927475     NM_152290  C1orf158
9   chr7   16715388       16833697  NM_001159767      BZW2
10  chr7   16715388       16833697     NM_006408      AGR2
11  chr7   16715388       16833697     NM_014399   TSPAN13,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2  110197139      110316368  NM_001099289    SH3RF3
1  chr2  110197139      110316368  NM_001321504    SEPT10
3  chr7   64106107       64219631  NM_001282360    ZNF107
5  chr7   64106107       64219631     NR_106898   MIR6839,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3  131263580      131441161  NM_001289112     CPNE4
3  chr4   66755481       67159699     NR_031673  MIR1269A
4  chr5   23993373       24171679     NR_131245   C5orf17
5  chr6   80968700       81100842     NM_000056    BCKDHB,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  108387085      108554591     NM_006113       VAV3
1    chr1  108387085      108554591     NR_046653   VAV3-AS1
2    chr1  108387085      108554591     NR_107006    MIR7852
3   chr14   21938801       22111905  NM_001005465     OR10G3
4   chr14   21938801       22111905  NM_001005466     OR10G2
5   chr14   21938801       22111905  NM_001163380      RAB2B
6   chr14   21938801       22111905  NM_001303523       TOX4
7   chr14   21938801       22111905     NM_019852     METTL3
9   chr14   21938801       22111905     NR_111966      SALL2
11   chr7  109569240      109995247     NR_003024    EIF3IP1
12   chr8   48437335       48733507  NM_001080394      SPIDR
13   chr8   48437335       48733507     NM_005195      CEBPD
14   chr8   48437335       48733507     NM_006904      PRKDC
15   chr8  111986111      112150160     NR_125416  LINC01608
17   chr8  111986111      112150160     NR_125418  LINC01609,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   10563247       11231222  NM_001110213          PRH2
1   chr12   10563247       11231222  NM_001291315          PRH1
2   chr12   10563247       11231222  NM_001300739        MAGOHB
3   chr12   10563247       11231222  NM_001304448         KLRC1
4   chr12   10563247       11231222  NM_001316893  PRH1-TAS2R14
6   chr12   10563247       11231222     NM_002260         KLRC2
7   chr12   10563247       11231222     NM_002261         KLRC3
8   chr12   10563247       11231222     NM_003651          YBX3
9   chr12   10563247       11231222     NM_007244          PRR4
12  chr12   10563247       11231222     NM_018423         STYK1
13  chr12   10563247       11231222     NM_023917        TAS2R9
14  chr12   10563247       11231222     NM_023918        TAS2R8
15  chr12   10563247       11231222     NM_023919        TAS2R7
16  chr12   10563247       11231222     NM_023920       TAS2R13
17  chr12   10563247       11231222     NM_023921       TAS2R10
18  chr12   10563247       11231222     NM_023922       TAS2R14
19  chr12   10563247       11231222     NM_176885       TAS2R31
20  chr12   10563247       11231222     NM_176887       TAS2R46
21  chr12   10563247       11231222     NM_176888       TAS2R19
22  chr12   10563247       11231222     NM_176889       TAS2R20
23  chr12   10563247       11231222     NM_176890       TAS2R50
25  chr12   10563247       11231222     NR_028045        KLRA1P
26  chr12   10563247       11231222     NR_037918     PRH1-PRR4
27  chr12   10563247       11231222     NR_120463  LOC101928162
29  chr19   10305870       10717612     NM_000201         ICAM1
30  chr19   10305870       10717612  NM_001031734         FDX1L
31  chr19   10305870       10717612  NM_001103167         ZGLP1
32  chr19   10305870       10717612  NM_001111307         PDE4A
35  chr19   10305870       10717612  NM_001145056       SLC44A2
36  chr19   10305870       10717612  NM_001166215         S1PR5
38  chr19   10305870       10717612  NM_001281504         ATG4D
39  chr19   10305870       10717612  NM_001300887         AP1M2
40  chr19   10305870       10717612  NM_001320608         ICAM3
41  chr19   10305870       10717612     NM_001544         ICAM4
42  chr19   10305870       10717612     NM_001800        CDKN2D
43  chr19   10305870       10717612     NM_003259         ICAM5
44  chr19   10305870       10717612     NM_003331          TYK2
45  chr19   10305870       10717612     NM_004230         S1PR2
47  chr19   10305870       10717612     NM_007065         CDC37
48  chr19   10305870       10717612     NM_012289         KEAP1
49  chr19   10305870       10717612     NM_015956         MRPL4
50  chr19   10305870       10717612     NM_023008          KRI1
53  chr19   10305870       10717612     NM_133452        RAVER1
56  chr19   10305870       10717612     NR_031592       MIR1181
57  chr19   10305870       10717612     NR_031603       MIR1238
58  chr19   10305870       10717612     NR_036206       MIR4322
59   chr7   75852209       75957902  NM_001110199         SRRM3
60   chr7   75852209       75957902     NM_001540         HSPB1
61   chr7   75852209       75957902     NM_012479         YWHAG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  215822868      217670758  NM_001134285         ESRRG
7    chr1  215822868      217670758     NM_007123         USH2A
8    chr1  215822868      217670758     NM_018040       GPATCH2
10   chr1  215822868      217670758     NR_125992  LOC102723833
11  chr13   63280451       63406618     NR_047029     LINC00448
14  chr13   71720579       71829855     NR_047699     LINC00348
15  chr21   17900473       18015091     NR_027790      MIR99AHG
17  chr21   17900473       18015091     NR_029480      MIRLET7C
18  chr21   17900473       18015091     NR_029514        MIR99A
19  chr21   17900473       18015091     NR_029694      MIR125B2
28  chr22   32320733       32459612     NM_000343        SLC5A1
30  chr22   32320733       32459612  NM_001302819      C22orf24
31  chr22   32320733       32459612     NM_003405         YWHAH
33   chr3  117931219      118255755     NR_135547  LOC105374060
34   chr8  110240016      110658340  NM_001099743          SYBU
39   chr8  110240016      110658340  NM_001128211        NUDCD1
40   chr8  110240016      110658340  NM_001193557          ENY2
41   chr8  110240016      110658340  NM_001278938         EBAG9
42   chr8  110240016      110658340  NM_001317989  LOC100132813
47   chr8  110240016      110658340     NM_177531       PKHD1L1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37415812       37540277     NM_052997      ANKRD30A
1    chr7   64062001       64295375  NM_001160183        ZNF138
2    chr7   64062001       64295375  NM_001282360        ZNF107
4    chr7   64062001       64295375     NR_077227  LOC100128885
6    chr7   64062001       64295375     NR_106898       MIR6839
7    chr7  109512220      109917012     NR_003024       EIF3IP1
8    chr7  110699346      110871960  NM_001099658         LRRN3
9    chr7  110699346      110871960  NM_001244606        IMMP2L
11   chr9   74709374       75038181  NM_001102420        ZFAND5
12   chr9   74709374       75038181  NM_001242505           GDA
15   chr9   74709374       75038181     NR_110952     LINC01504,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr7   24306813       24511819  NM_000905       NPY,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10    1989015        2114455     NR_040253  LINC00700
1   chr10   27637839       28046704  NM_001034842     PTCHD3
2   chr10   27637839       28046704  NM_001242702        MKX
3   chr10   27637839       28046704  NM_001256411      RAB18
4   chr10   27637839       28046704     NR_121652    MKX-AS1
5   chr10   55779465       55930945  NM_001142770     PCDH15
8   chr15   30249587       30384072  NM_001282472    GOLGA8J
9   chr15   30249587       30384072  NM_001301025       TJP1
10   chr2  110188030      110318351  NM_001099289     SH3RF3
11   chr2  110188030      110318351  NM_001321504     SEPT10,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   81837254       82010423     NR_120571     MIR4300HG
1    chr2   97159292       97441695  NM_001115016        KANSL3
2    chr2   97159292       97441695  NM_001285485        NEURL3
3    chr2   97159292       97441695  NM_001293083        FER1L5
4    chr2   97159292       97441695  NM_001319085        ARID5A
6    chr2   97159292       97441695  NM_001322354        LMAN2L
7    chr2   97159292       97441695     NM_020184         CNNM4
11   chr2   97159292       97441695     NR_135564  LOC105373496
12   chr6  130187198      130592294  NM_001007102       L3MBTL3
13   chr6  130187198      130592294  NM_001017373         SAMD3
18   chr9    9843662       10078385     NM_002839         PTPRD
19   chr9   28612551       28800627  NM_001258282        LINGO2,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr8   19763389       19875943  NM_000237       LPL,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  165187312      165728573     NM_000696    ALDH9A1
1   chr1  165187312      165728573  NM_001005214     LRRC52
2   chr1  165187312      165728573  NM_001174069      LMX1A
3   chr1  165187312      165728573  NM_001256571       RXRG
4   chr1  165187312      165728573     NM_004528      MGST3
6   chr1  165187312      165728573     NM_019026      TMCO1
8   chr1  165187312      165728573     NR_026744  LOC400794
10  chr1  165187312      165728573     NR_036683  LOC440700
11  chr9   28552470       28950537  NM_001258282     LINGO2
13  chr9   28552470       28950537     NR_030597     MIR876
14  chr9   28552470       28950537     NR_030618     MIR873
15  chr9   41861529       41968806     NR_003670     FGF7P3
16  chr9   41861529       41968806     NR_015363      GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20634899       20780221  NM_001145004      GOLGA6L6
1   chr15   20634899       20780221     NR_027411      GOLGA8CP
2   chr15   20634899       20780221     NR_036432       HERC2P3
3   chr15   30277193       30583381  NM_001282472       GOLGA8J
4   chr15   30277193       30583381     NR_026771  DKFZP434L187
5   chr15   30277193       30583381     NR_026859        ULK4P3
6   chr15   30277193       30583381     NR_033933       GOLGA8T
7    chr2   34178252       34352976     NR_126403     LINC01317
8    chr2   34178252       34352976     NR_132381     LINC01318
9   chr20   14650846       14798159     NM_080676       MACROD2
10  chr22   20099955       20277536  NM_001243537       CCDC188
11  chr22   20099955       20277536  NM_001278639        RANBP1
14  chr22   20099955       20277536     NM_013373        ZDHHC8
15  chr22   20099955       20277536     NM_022727        TRMT2A
16  chr22   20099955       20277536     NM_023004         RTN4R
17  chr22   20099955       20277536     NR_026919     LINC00896
18  chr22   20099955       20277536     NR_031618       MIR1286
19  chr22   20099955       20277536     NR_038460     LOC284865
20  chr22   20099955       20277536     NR_106874       MIR6816
21   chr6    5125468        5230084  NM_001164840         LYRM4
24   chr6    5125468        5230084     NR_037462       MIR3691
25   chr6    5125468        5230084     NR_126015     LYRM4-AS1
27   chr6  131067718      131179872  NM_001135554       EPB41L2
28   chr6  131067718      131179872  NM_001195597         SMLR1
30   chr7    5625832        5845606     NM_003088         FSCN1
31   chr7    5625832        5845606     NM_207116        RNF216
32   chr7    5625832        5845606     NR_046834    RNF216-IT1
33   chr7    5625832        5845606     NR_106934       MIR6874,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4201480        4317454     NR_047550  LOC100506082
1   chr13   54409598       54523178     NR_047488     LINC00558
2   chr19    1771092        1960223  NM_001080488       ONECUT3
3   chr19    1771092        1960223  NM_001130111       ABHD17A
4   chr19    1771092        1960223  NM_001178002        ATP8B3
5   chr19    1771092        1960223     NM_001319       CSNK1G2
6   chr19    1771092        1960223  NM_001329539        SCAMP4
7   chr19    1771092        1960223     NM_020695         REXO1
8   chr19    1771092        1960223     NM_031918         KLF16
9   chr19    1771092        1960223     NM_138422         ADAT3
11  chr19    1771092        1960223     NR_031730       MIR1909
12  chr19    1771092        1960223     NR_033400   CSNK1G2-AS1
13  chr19    1771092        1960223     NR_034114  LOC100288123
14   chr6   80980679       81241924     NM_000056        BCKDHB
15   chr7  133289517      133544584     NM_021807         EXOC4
16   chr7  133289517      133544584     NR_120513  LOC101928861
17   chr9    4467333        4758313  NM_001039395       SPATA6L
18   chr9    4467333        4758313  NM_001199853           AK3
21   chr9    4467333        4758313     NM_004170        SLC1A1
23   chr9    4467333        4758313     NM_017913       CDC37L1
24   chr9    4467333        4758313     NM_203453         PLPP6
25   chr9    4467333        4758313     NR_121597   CDC37L1-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr6    1875924        2016309  NM_001253846          GMDS
2   chr7   64039137       64193833  NM_001282360        ZNF107
3   chr7   64039137       64193833     NR_033245     LOC641746
4   chr7   64039137       64193833     NR_077227  LOC100128885
6   chr7   64039137       64193833     NR_106898       MIR6839
7   chr9   39059755       39468858  NM_001085452     SPATA31A1
8   chr9   39059755       39468858     NM_033655       CNTNAP3
9   chr9   39059755       39468858     NR_003528       ZNF658B
10  chr9   39059755       39468858     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14789050       14906054     NM_080676      MACROD2
1  chr20   14789050       14906054     NR_037841  MACROD2-AS1
3   chr7   16705748       16845526  NM_001159767         BZW2
4   chr7   16705748       16845526     NM_006408         AGR2
5   chr7   16705748       16845526     NM_014399      TSPAN13,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  237512163      237692305     NM_001035          RYR2
1    chr1  237512163      237692305     NR_039626       MIR4428
2   chr10   68092224       68268121  NM_001127384        CTNNA3
4   chr11    4246071        4910992  NM_001004137        OR52M1
5   chr11    4246071        4910992  NM_001004751        OR51D1
6   chr11    4246071        4910992  NM_001004752        OR51F1
7   chr11    4246071        4910992  NM_001004753        OR51F2
8   chr11    4246071        4910992  NM_001004758        OR51S1
9   chr11    4246071        4910992  NM_001004759        OR51T1
10  chr11    4246071        4910992  NM_001005161        OR52B4
11  chr11    4246071        4910992  NM_001005169        OR52I1
12  chr11    4246071        4910992  NM_001005170        OR52I2
13  chr11    4246071        4910992  NM_001005171        OR52K1
14  chr11    4246071        4910992  NM_001005172        OR52K2
15  chr11    4246071        4910992  NM_001005177        OR52R1
16  chr11    4246071        4910992     NM_003141        TRIM21
17  chr11    4246071        4910992     NM_018073        TRIM68
18  chr11    4246071        4910992     NM_030774        OR51E2
19  chr11    4246071        4910992     NM_144663      C11orf40
20  chr11    4246071        4910992     NM_152430        OR51E1
21  chr16   21480838       21605626     NR_002594      SLC7A5P2
22  chr16   21480838       21605626     NR_027155        SMG1P3
23  chr16   21480838       21605626     NR_049833     MIR3680-2
24  chr16   21480838       21605626     NR_110930  LOC101927814
25  chr16   68801544       68993159  NM_001317184          CDH1
26  chr16   68801544       68993159     NM_024562        TANGO6
27   chr4   69272076       69410962     NM_001077       UGT2B17
28   chr4   69272076       69410962     NM_014058     TMPRSS11E
29   chr5  150101733      150209434  NM_001135643         DCTN4
31   chr5  150101733      150209434     NM_032947         SMIM3
32   chr9   39081750       39187143     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88944497       89056182  NM_001099338      NUTM2A
1   chr10   88944497       89056182  NM_001330112      FAM35A
3   chr10   88944497       89056182     NR_024397  NUTM2A-AS1
4   chr14   47790165       47904737  NM_001113498       MDGA2
7   chr15   21179091       21472178     NR_040094   LINC01193
8    chr3    4177291        4581509  NM_001164675       SUMF1
9    chr3    4177291        4581509  NM_001168272       ITPR1
10   chr3    4177291        4581509  NM_001243723      SETMAR
12   chr3    4177291        4581509     NR_108075   ITPR1-AS1
13   chr4   93262317       94859107     NM_001510       GRID2
14   chr4   93262317       94859107     NM_005172       ATOH1
15   chr7  110650564      111008723  NM_001099658       LRRN3
16   chr7  110650564      111008723  NM_001244606      IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   15401873       15638790  NM_001128423    MPV17L
1  chr16   15401873       15638790  NM_001142469  C16orf45
2  chr16   15401873       15638790  NM_001277325    NPIPA5
4   chr7    8659509        8763581     NM_152745     NXPH1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   27230619       27360410  NM_001080406  C12orf71,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   30272928       30393506  NM_001282472   GOLGA8J,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   54773441       54989437  NR_031628    MIR1297
1   chr3  162933740      163084095  NR_033945  LINC01192
2   chr4   71404825       71568790  NM_016519       AMBN
3   chr4   71404825       71568790  NM_020368       UTP3
4   chr4   71404825       71568790  NM_031889       ENAM
5   chr4   71404825       71568790  NM_144646     JCHAIN
6   chr7    3344423        3555512  NM_152744       SDK1
7   chr8    6955892        7138950  NR_027000  LINC00965,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   63142601       63916678     NR_047029  LINC00448
3  chr13   63142601       63916678     NR_126409  LINC00376
4   chr2  110184151      110293009  NM_001099289     SH3RF3
5   chr7  110555944      110833241  NM_001099658      LRRN3
6   chr7  110555944      110833241  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr18     635053         739669  NM_001012716        TYMSOS
1   chr18     635053         739669     NM_001071          TYMS
2   chr18     635053         739669  NM_001126123        ENOSF1
3   chr18     635053         739669  NM_001289036         CLUL1
7   chr18     635053         739669     NM_005433          YES1
10   chr6  145822599      146210779  NM_001042683         SHPRH
11   chr6  145822599      146210779     NM_005670         EPM2A
12   chr6  145822599      146210779     NM_032145        FBXO30
13   chr6  145822599      146210779     NR_038245  LOC100507557,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   71731317       72007511     NR_047699  LINC00348
1   chr15   20934541       21113427  NM_001277303     POTEB2
2   chr15   20934541       21113427     NM_207355     POTEB3
3   chr15   20934541       21113427     NR_027992     NBEAP1
4   chr15   20934541       21113427     NR_036062  MIR3118-2
6   chr22   20072504       20202295  NM_001190326      DGCR8
7   chr22   20072504       20202295  NM_001243537    CCDC188
8   chr22   20072504       20202295  NM_001278639     RANBP1
11  chr22   20072504       20202295     NM_013373     ZDHHC8
12  chr22   20072504       20202295     NM_022727     TRMT2A
13  chr22   20072504       20202295     NR_026919  LINC00896
14  chr22   20072504       20202295     NR_031706    MIR1306
15  chr22   20072504       20202295     NR_037412    MIR3618
16  chr22   20072504       20202295     NR_038460  LOC284865
17  chr22   20072504       20202295     NR_106874    MIR6816
18   chr7   64112073       64373671  NM_001160183     ZNF138
19   chr7   64112073       64373671  NM_001282360     ZNF107
20   chr7   64112073       64373671     NM_021148     ZNF273
23   chr7   64112073       64373671     NR_106898    MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   19622677       19895015  NM_001267043     AEBP2
2    chr3   59996876       60136037  NM_001320899      FHIT
4    chr6  162777204      162883748     NM_013988     PARK2
5    chr6  162847145      163121122     NM_013988     PARK2
6    chr7   64122633       64507857  NM_001007253    ERV3-1
7    chr7   64122633       64507857  NM_001160183    ZNF138
8    chr7   64122633       64507857  NM_001282360    ZNF107
9    chr7   64122633       64507857     NM_015852    ZNF117
10   chr7   64122633       64507857     NM_021148    ZNF273
11   chr7   64122633       64507857     NR_033416    CCT6P3
14   chr7   64122633       64507857     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr18   61810078       61933007     NR_027245     LINC00305
1   chr18   61810078       61933007     NR_033881     LOC284294
2   chr18   61810078       61933007     NR_033983     LINC01538
3   chr21   29481070       29661905     NR_126010     LOC284825
4   chr21   29481070       29661905     NR_126012  LOC101927973
5    chr4   80217876       81512407  NM_001099403         PRDM8
6    chr4   80217876       81512407  NM_001145794        ANTXR2
7    chr4   80217876       81512407  NM_001206997       C4orf22
10   chr4   80217876       81512407  NM_001291812          FGF5
12   chr4   80217876       81512407     NM_032693         NAA11
14   chr4   80217876       81512407     NM_033214           GK2
15   chr4   80217876       81512407     NR_026555         PCAT4
16   chr4   80217876       81512407     NR_038342     LINC01088
17   chr4   80217876       81512407     NR_038826     LINC00989
18   chr8  124982043      125085707  NM_001039112        FER1L6
19   chr8  124982043      125085707     NR_040044    FER1L6-AS1
20   chr8  124982043      125085707     NR_103547    FER1L6-AS2
21   chr9   25472883       25907506  NM_001004125         TUSC1
22   chr9   25472883       25907506     NR_121604     LINC01241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21734683       21848207  NM_001161683          OTOA
1   chr16   21734683       21848207  NM_001310148        NPIPB4
4   chr16   21734683       21848207     NR_003370        RRN3P1
5    chr2   97301148       97423321  NM_001115016        KANSL3
6    chr2   97301148       97423321  NM_001293083        FER1L5
7    chr2   97301148       97423321  NM_001322354        LMAN2L
10   chr2  110133149      110348773  NM_001099289        SH3RF3
11   chr2  110133149      110348773  NM_001321504        SEPT10
13  chr20   41064477       41235976     NM_133170         PTPRT
14   chr6  162884052      164201851  NM_001080378         PACRG
16   chr6  162884052      164201851     NM_006775           QKI
17   chr6  162884052      164201851     NM_013988         PARK2
18   chr6  162884052      164201851     NR_028390     PACRG-AS1
19   chr6  162884052      164201851     NR_033862  DKFZp451B082
20   chr6  162884052      164201851     NR_037593          CAHM
21   chr6  162884052      164201851     NR_110871     PACRG-AS2
23   chr6  162884052      164201851     NR_122120     PACRG-AS3
24   chr6  162884052      164201851     NR_134620  LOC102724152
25   chr9    9931720       10033922     NM_002839         PTPRD,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   42210693       42680262  NM_001346175      LRFN5
1  chr15   28669968       28797511     NR_033351    GOLGA8F
2  chr15   28669968       28797511     NR_033353    GOLGA8G
3  chr15   28669968       28797511     NR_039734  MIR4509-3
5   chr3    7007535        7420133     NM_181874       GRM7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89141838       89272543  NM_001143837          NOX4
6   chr16   82979586       83081606  NM_001220488         CDH13
8   chr16   82979586       83081606     NR_110937  LOC101928417
9    chr7   64027521       65375834  NM_001007253        ERV3-1
10   chr7   64027521       65375834  NM_001160183        ZNF138
11   chr7   64027521       65375834  NM_001282360        ZNF107
12   chr7   64027521       65375834  NM_001287532         ZNF92
13   chr7   64027521       65375834     NM_015852        ZNF117
14   chr7   64027521       65375834     NM_021148        ZNF273
15   chr7   64027521       65375834     NM_173517      VKORC1L1
16   chr7   64027521       65375834     NR_002961       SNORA22
17   chr7   64027521       65375834     NR_003110        CCT6P1
18   chr7   64027521       65375834     NR_027392       INTS4P2
19   chr7   64027521       65375834     NR_033245     LOC641746
20   chr7   64027521       65375834     NR_033416        CCT6P3
21   chr7   64027521       65375834     NR_038378     LOC441242
23   chr7   64027521       65375834     NR_077227  LOC100128885
26   chr7   64027521       65375834     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10  135275110      135380729     NM_000773    CYP2E1
1  chr10  135275110      135380729  NM_001143763     SYCE1
4  chr10  135275110      135380729     NR_002934    SCART1
5  chr10  135275110      135380729     NR_033789    SPRNP1
6  chr16   16471844       16573302  NM_001282511    NPIPA8
7   chr7  110602114      111191192  NM_001099658     LRRN3
8   chr7  110602114      111191192  NM_001244606    IMMP2L, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr22   32467733       32582687     NM_000343    SLC5A1
1  chr22   32467733       32582687  NM_001010859  C22orf42
3  chr22   32467733       32582687     NR_040114   AP1B1P1
4   chr3   17295029       17588134  NM_001134381    TBC1D5
6   chr3  101143871      101284920  NM_001282803     SENP7
8   chr3  101143871      101284920     NM_017819   TRMT10C
9   chr3  101143871      101284920     NR_036433  FAM172BP,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187082551      187371886     NR_126347     LINC01036
1   chr14   19884098       20055413  NM_001145442         POTEM
2   chr14   19884098       20055413     NR_073459       BMS1P18
3   chr14   19884098       20055413     NR_110505  LOC100508046
4   chr14   19884098       20055413     NR_110526       DUXAP10
5   chr14   19884098       20055413     NR_122111     LINC01296
7   chr14   19884098       20055413     NR_133911       BMS1P22
8   chr22   19918202       20123420     NM_000754          COMT
11  chr22   19918202       20123420  NM_001190326         DGCR8
12  chr22   19918202       20123420  NM_001278639        RANBP1
15  chr22   19918202       20123420  NM_001282512        TXNRD2
16  chr22   19918202       20123420  NM_001283116        TANGO2
19  chr22   19918202       20123420     NM_001670         ARVCF
22  chr22   19918202       20123420     NM_013373        ZDHHC8
23  chr22   19918202       20123420     NM_022727        TRMT2A
24  chr22   19918202       20123420     NR_029706        MIR185
25  chr22   19918202       20123420     NR_031706       MIR1306
26  chr22   19918202       20123420     NR_037412       MIR3618
27  chr22   19918202       20123420     NR_039918       MIR4761
28  chr22   19918202       20123420     NR_106874       MIR6816
29   chr7   29509126       29678583  NM_001293069          CHN2
33   chr7   29509126       29678583  NM_001329997         PRR15,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   76024477       76135319  NM_001130058    SLC44A5
4   chr15   99890117      100240587  NM_001130928      MEF2A
5   chr15   99890117      100240587  NM_001284400     LRRC28
8   chr21   23038867       23230482     NR_038872  LINC00317
9   chr21   23038867       23230482     NR_109958  LINC01425
10   chr9   38916056       39269978     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48305476       48538288  NM_001004702         OR4C3
1   chr11   48305476       48538288  NM_001004725         OR4S1
2   chr11   48305476       48538288  NM_001005512        OR4A47
3   chr11   48305476       48538288  NM_001005513        OR4C45
4   chr14   45437199       45574284  NM_001308120       FAM179B
5   chr14   45437199       45574284     NM_017922        PRPF39
6   chr20   14727199       14925853     NM_080676       MACROD2
7   chr20   14727199       14925853     NR_037841   MACROD2-AS1
9    chr3  146562068      146668501     NR_135560  LOC101927866
10   chr5   17673161       17818627     NR_134286     LOC646241
12   chr7   69247846       69582382  NM_001127231         AUTS2
14   chr9   11928198       12812406     NM_000550         TYRP1
15   chr9   11928198       12812406     NM_203403       LURAP1L
16   chr9   11928198       12812406     NR_125775   LURAP1L-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  186182459      186405115  NM_001164245       C1orf27
1    chr1  186182459      186405115  NM_001303232          PRG4
2    chr1  186182459      186405115     NM_003292           TPR
3    chr1  186182459      186405115     NM_022375          OCLM
4    chr1  186182459      186405115     NR_126002  LOC102724919
5   chr11   20792411       21008299  NM_001288713         NELL1
6   chr19    1843999        1981234  NM_001130111       ABHD17A
7   chr19    1843999        1981234     NM_001319       CSNK1G2
8   chr19    1843999        1981234  NM_001329539        SCAMP4
9   chr19    1843999        1981234     NM_020695         REXO1
10  chr19    1843999        1981234     NM_031918         KLF16
11  chr19    1843999        1981234     NM_138422         ADAT3
12  chr19    1843999        1981234     NR_033400   CSNK1G2-AS1
13   chr2  181843630      182121353  NM_001278554        UBE2E3
16   chr2  181843630      182121353     NR_130784  LOC101927156
17   chr7  110674308      110789680  NM_001099658         LRRN3
18   chr7  110674308      110789680  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   57669411       57796615  NM_001330122     R3HDM2
2   chr15   20995690       21121888  NM_001277303     POTEB2
3   chr15   20995690       21121888     NM_207355     POTEB3
4   chr15   20995690       21121888     NR_036062  MIR3118-2
6    chr7    2678559        2801345  NM_001282440      GNA12
8    chr7    2678559        2801345  NM_001284355       AMZ1
11   chr7    2678559        2801345     NM_025250      TTYH3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   63175279       63843254     NR_047029  LINC00448
3  chr13   63175279       63843254     NR_126409  LINC00376
4  chr16    6696270        7026910  NM_001142334     RBFOX1
7   chr4   69266692       69420403     NM_001077    UGT2B17
8   chr4   69266692       69420403     NM_014058  TMPRSS11E
9   chr6  162551877      162664625     NM_013988      PARK2,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr20   14623403       14849151  NM_080676   MACROD2
1   chr6  162627970      162835436  NM_013988     PARK2
2   chr7   11012478       11776068  NM_014660     PHF14
3   chr7   11012478       11776068  NM_015204    THSD7A,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  245057237      245161740  NM_001143943        EFCAB2
3   chr1  245057237      245161740     NR_111907  LOC101928068
4   chr2   97154724       97301945  NM_001115016        KANSL3
5   chr2   97154724       97301945  NM_001285485        NEURL3
6   chr2   97154724       97301945  NM_001319085        ARID5A
10  chr2   97154724       97301945     NR_135564  LOC105373496,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   83677697       83888786  NM_001142699       DLG2
4  chr12   16250678       16380113  NM_001170798    SLC15A5
5   chr9   30338177       30522527     NR_046204  LINC01242,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr6    4243744        4464293     NR_106988  MIR7641-2
1  chr6   89407960       89592310  NM_001286428      RNGTT,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr8    8132533        8232994  NM_001080826     PRAG1
1  chr9   14847121       14978609     NM_144966     FREM1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   15101223       15222331  NM_001270767          NTAN1
1   chr16   15101223       15222331  NM_001285445         PDXDC1
6   chr16   15101223       15222331  NM_001301064           RRN3
8   chr16   15101223       15222331     NR_123721  PKD1P6-NPIPP1
10  chr16   15101223       15222331     NR_125434   LOC100505915
11   chr7   14919212       15317431  NM_001004320           AGMO
12   chr7   64064738       64322183  NM_001160183         ZNF138
13   chr7   64064738       64322183  NM_001282360         ZNF107
15   chr7   64064738       64322183     NR_077227   LOC100128885
17   chr7   64064738       64322183     NR_106898        MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   84142744       84285468  NM_001142699       DLG2
2   chr18   55796979       56016926  NM_001144964     NEDD4L
7    chr2   34238827       34391233     NR_126403  LINC01317
8    chr2   34238827       34391233     NR_132381  LINC01318
9    chr8   50588910       51352500  NM_001287813      SNTG1
14   chr9   30375781       30533052     NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30255078       31727756  NM_001039841     ARHGAP11B
1   chr15   30255078       31727756  NM_001146094          FAN1
3   chr15   30255078       31727756  NM_001243538     LOC283710
4   chr15   30255078       31727756  NM_001252020         TRPM1
7   chr15   30255078       31727756  NM_001282472       GOLGA8J
8   chr15   30255078       31727756  NM_001282484       GOLGA8R
9   chr15   30255078       31727756  NM_001282490       GOLGA8H
10  chr15   30255078       31727756  NM_001301025          TJP1
11  chr15   30255078       31727756  NM_001302461         KLF13
14  chr15   30255078       31727756     NM_017762        MTMR10
15  chr15   30255078       31727756     NM_139320      CHRFAM7A
16  chr15   30255078       31727756     NR_026771  DKFZP434L187
17  chr15   30255078       31727756     NR_026858        ULK4P1
18  chr15   30255078       31727756     NR_026859        ULK4P3
19  chr15   30255078       31727756     NR_029624        MIR211
20  chr15   30255078       31727756     NR_033933       GOLGA8T
21  chr15   30255078       31727756     NR_038253  LOC100288637
23  chr15   30255078       31727756     NR_072991      HERC2P10
24  chr15   30255078       31727756     NR_135834  LOC102725022
25  chr15   30261893       30663392  NM_001282472       GOLGA8J
26  chr15   30261893       30663392     NM_139320      CHRFAM7A
27  chr15   30261893       30663392     NR_026771  DKFZP434L187
28  chr15   30261893       30663392     NR_026859        ULK4P3
29  chr15   30261893       30663392     NR_033933       GOLGA8T
30  chr20    9019380        9214290  NM_001172646         PLCB4,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr21   40114710       40322624  NM_001256295          ETS2
2  chr21   40114710       40322624     NR_027065     LINC00114
5  chr21   40114710       40322624     NR_109926  LOC101928398
6  chr21   40114710       40322624     NR_120405     LOC400867
7   chr3  176577538      176740259  NM_001321193       TBL1XR1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   26981460       27125077     NM_002515         NOVA1
2   chr15   20710034       20813632  NM_001145004      GOLGA6L6
3   chr15   20710034       20813632     NR_027411      GOLGA8CP
4   chr15   20710034       20813632     NR_036432       HERC2P3
5    chr2  109871255      109978008  NM_001099289        SH3RF3
6    chr2  109871255      109978008     NR_036224       MIR4266
7    chr4   75350761       75992803  NM_001316963           BTC
8    chr4   75350761       75992803     NM_001657          AREG
9    chr4   75350761       75992803     NM_015393         PARM1
10   chr4   75350761       75992803     NR_121617  LOC100507388,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   63033190       63519599  NR_047029  LINC00448
3  chr13   63140399       63275719  NR_047029  LINC00448
4   chr8    4019022        4140113  NM_033225      CSMD1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr4     111715         643165     NM_000283      PDE6B
1   chr4     111715         643165  NM_001039127     ZNF718
2   chr4     111715         643165  NM_001137608     ZNF732
3   chr4     111715         643165  NM_001289053       PIGG
6   chr4     111715         643165     NM_003441     ZNF141
7   chr4     111715         643165     NM_133474     ZNF721
8   chr4     111715         643165     NR_002451    ABCA11P
9   chr4     111715         643165     NR_027481    ZNF876P
10  chr4     111715         643165     NR_030297     MIR571
15  chr4   69217897       69459529     NM_001077    UGT2B17
16  chr4   69217897       69459529     NM_014058  TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name        gene_name
0    chr1  165181631      165627318  NM_001005214           LRRC52
1    chr1  165181631      165627318  NM_001174069            LMX1A
2    chr1  165181631      165627318  NM_001256571             RXRG
3    chr1  165181631      165627318     NM_004528            MGST3
6    chr1  165181631      165627318     NR_026744        LOC400794
8   chr14   47779904       47903889  NM_001113498            MDGA2
11   chr2  110210829      110801984  NM_001037866            RGPD6
12   chr2  110210829      110801984  NM_001099289           SH3RF3
14   chr2  110210829      110801984  NM_001205288            LIMS4
15   chr2  110210829      110801984  NM_001321504           SEPT10
17   chr2  110210829      110801984     NM_005054            RGPD5
18   chr2  110210829      110801984     NM_023016           SOWAHC
19   chr2  110210829      110801984     NR_027142        LOC440895
20   chr2  110210829      110801984     NR_027145  LIMS3-LOC440895
21   chr2  110210829      110801984     NR_027467            LIMS3
22   chr2  110210829      110801984     NR_046110        LINC01123
23   chr3  156140035      156359982  NM_001308197             SSR3
26   chr3  156140035      156359982  NM_001308217           KCNAB1
31   chr3  156140035      156359982     NR_046618       KCNAB1-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   20935908       21037968     NM_019844   SLCO1B3
1  chr14   26988609       27192016     NM_002515     NOVA1
3  chr20   25312080       25510865  NM_001042472    ABHD12
4  chr20   25312080       25510865  NM_001318226      NINL
6  chr20   25312080       25510865     NM_021067     GINS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12810755       13207727  NM_001009611       PRAMEF4
1    chr1   12810755       13207727  NM_001010889       PRAMEF6
2    chr1   12810755       13207727  NM_001010890       PRAMEF9
3    chr1   12810755       13207727  NM_001012276       PRAMEF8
4    chr1   12810755       13207727  NM_001013407       PRAMEF5
5    chr1   12810755       13207727  NM_001013631      HNRNPCL1
6    chr1   12810755       13207727  NM_001080830      PRAMEF12
7    chr1   12810755       13207727  NM_001099850      PRAMEF18
8    chr1   12810755       13207727  NM_001100631      PRAMEF22
9    chr1   12810755       13207727  NM_001136561      HNRNPCL2
10   chr1   12810755       13207727  NM_001146181      HNRNPCL3
11   chr1   12810755       13207727  NM_001146344      PRAMEF11
12   chr1   12810755       13207727  NM_001294139       PRAMEF1
13   chr1   12810755       13207727  NM_001302551      HNRNPCL4
14   chr1   12810755       13207727  NM_001306072      PRAMEF26
15   chr1   12810755       13207727  NM_001310134      PRAMEF25
17   chr1   12810755       13207727     NM_023014       PRAMEF2
18   chr1   12810755       13207727     NM_152290      C1orf158
19   chr1   12810755       13207727     NR_111945     PRAMEF36P
21  chr18   63761963       67289053  NM_001093729      CCDC102B
22  chr18   63761963       67289053     NM_019022          TMX3
23  chr18   63761963       67289053     NM_021153         CDH19
25  chr18   63761963       67289053     NM_032160          DSEL
26  chr18   63761963       67289053     NM_152721          DOK6
27  chr18   63761963       67289053     NR_033921     LOC643542
28  chr18   63761963       67289053     NR_049809       MIR5011
29  chr18   63761963       67289053     NR_134579  LOC105372179
30   chr9   43070050       43263945  NM_001012419     ANKRD20A3
31   chr9   43070050       43263945  NM_001012421     ANKRD20A2
32   chr9   43070050       43263945     NR_027472     LOC642929,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  186192789      186331717  NM_001303232          PRG4
1    chr1  186192789      186331717     NM_003292           TPR
2   chr15   28658365       28830667     NR_033351       GOLGA8F
3   chr15   28658365       28830667     NR_033353       GOLGA8G
4   chr15   28658365       28830667     NR_039734     MIR4509-3
6   chr15   30233711       30744261  NM_001282472       GOLGA8J
7   chr15   30233711       30744261  NM_001282484       GOLGA8R
8   chr15   30233711       30744261  NM_001301025          TJP1
9   chr15   30233711       30744261     NM_139320      CHRFAM7A
10  chr15   30233711       30744261     NR_026771  DKFZP434L187
11  chr15   30233711       30744261     NR_026859        ULK4P3
12  chr15   30233711       30744261     NR_033933       GOLGA8T
13  chr16   82970296       83170818  NM_001220488         CDH13
15  chr16   82970296       83170818     NR_110937  LOC101928417
16   chr3  111640824      111801355  NM_001008273        TAGLN3
17   chr3  111640824      111801355  NM_001134437        PHLDB2
19   chr3  111640824      111801355  NM_001272069        ABHD10
22   chr3  111640824      111801355     NR_026734       TMPRSS7,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   26967331       27184550     NM_002515     NOVA1
2  chr17   64540377       64646675     NM_002737     PRKCA
3   chr2   31377834       31670939     NM_000379       XDH
4   chr2   31377834       31670939  NM_001145122    CAPN14
6   chr2   31377834       31670939     NM_014600      EHD3
7   chr8    4181126        4524626     NM_033225     CSMD1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr12  120520157      121389014     NM_000017        ACADS
1   chr12  120520157      121389014     NM_000928      PLA2G1B
2   chr12  120520157      121389014  NM_001033677        CABP1
3   chr12  120520157      121389014  NM_001037494       DYNLL1
4   chr12  120520157      121389014  NM_001080533      UNC119B
5   chr12  120520157      121389014  NM_001167606        RAB35
6   chr12  120520157      121389014  NM_001303627         MLEC
8   chr12  120520157      121389014  NM_001330474        RNF10
9   chr12  120520157      121389014     NM_002442         MSI1
10  chr12  120520157      121389014     NM_002859          PXN
12  chr12  120520157      121389014     NM_003769        SRSF9
14  chr12  120520157      121389014     NM_004373       COX6A1
15  chr12  120520157      121389014     NM_006836         GCN1
16  chr12  120520157      121389014     NM_012240        SIRT4
18  chr12  120520157      121389014     NM_015918         POP5
19  chr12  120520157      121389014     NM_016399       TRIAP1
21  chr12  120520157      121389014     NM_032314         COQ5
22  chr12  120520157      121389014     NM_053275        RPLP0
23  chr12  120520157      121389014     NM_139015        SPPL3
24  chr12  120520157      121389014     NM_176818         GATC
26  chr12  120520157      121389014     NM_207311       BICDL1
27  chr12  120520157      121389014     NR_038854         NRAV
28  chr12  120520157      121389014     NR_038924      PXN-AS1
29  chr12  120520157      121389014     NR_039719      MIR4498
30  chr12  120520157      121389014     NR_039849      MIR4700
31  chr12  120520157      121389014     NR_131215  XLOC_009911
32  chr16   21780586       21953866  NM_001310148       NPIPB4
33  chr16   21780586       21953866     NR_003370       RRN3P1
34  chr18   19185228       19314320  NM_001291916       SNRPD1
35  chr18   19185228       19314320  NM_001308256        ABHD3
37  chr18   19185228       19314320     NR_031565     MIR320C1
38   chr3   60271063       60380130  NM_001320899         FHIT
39   chr5   22802723       22986234     NM_004061        CDH12
40   chr7  121596772      122140474  NM_001024613        FEZF1
41   chr7  121596772      122140474  NM_001206838       PTPRZ1
42   chr7  121596772      122140474     NM_005763         AASS
43   chr7  121596772      122140474     NM_017954       CADPS2
44   chr7  121596772      122140474     NR_036484    FEZF1-AS1,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2  133665902      133814637  NM_207363        NCKAP5
1  chr2  133665902      133814637  NR_135572  LOC101928185,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12   85513217       85631589  NM_001079910        LRRIQ1
1  chr20   14651647       14796354     NM_080676       MACROD2
2   chr9   41916114       42042679     NR_003670        FGF7P3
3   chr9   41916114       42042679     NR_015363         GLIDR
6   chr9   41916114       42042679     NR_126048  LOC102724238
7   chr9   41916114       42042679     NR_126049     LOC554249,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr6  144695934      144824892     NM_007124      UTRN
1  chr6  144695934      144824892     NR_132778   SNORA98
2  chr7    6689647        6810027  NM_001099697  RSPH10B2
3  chr7    6689647        6810027  NM_001278559    ZNF316
4  chr7    6689647        6810027     NM_006956     ZNF12
5  chr7    6689647        6810027     NR_002217    PMS2CL,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245040182      245177607  NM_001143943        EFCAB2
3    chr1  245040182      245177607     NR_111907  LOC101928068
4   chr16   76778714       77015631     NR_039870       MIR4719
5   chr19   33164765       33342755  NM_001105570        NUDT19
6   chr19   33164765       33342755  NM_001110822        TDRD12
7   chr19   33164765       33342755     NM_014270        SLC7A9
8   chr19   33164765       33342755     NM_032139       ANKRD27
9   chr19   33164765       33342755     NM_207391        RGS9BP
10   chr2  212985449      213171389  NM_001042599         ERBB4
11   chr7   64048083       64180377  NM_001282360        ZNF107
12   chr7   64048083       64180377     NR_077227  LOC100128885
14   chr7   64048083       64180377     NR_106898       MIR6839
15   chr7  110618220      110763349  NM_001099658         LRRN3
16   chr7  110618220      110763349  NM_001244606        IMMP2L
18   chr7  146559261      146703896     NM_014141       CNTNAP2
19   chr8  100534284      100782636     NM_017890        VPS13B
20   chr8  100534284      100782636     NR_030329        MIR599
21   chr8  100534284      100782636     NR_030596        MIR875,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr5   24040655       24403981  NR_131245   C5orf17
1  chr8  100607336      100739194  NM_017890    VPS13B
2  chr9  103362792      103860352  NM_207299    PLPPR1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr13  102868841      104052656     NM_000123       ERCC5
1   chr13  102868841      104052656     NM_000452     SLC10A2
2   chr13  102868841      104052656  NM_001010977    METTL21C
3   chr13  102868841      104052656  NM_001146197     CCDC168
4   chr13  102868841      104052656  NM_001159596        BIVM
5   chr13  102868841      104052656  NM_001204425  BIVM-ERCC5
6   chr13  102868841      104052656  NM_001286775       TEX30
7   chr13  102868841      104052656  NM_001321932       FGF14
13  chr13  102868841      104052656     NM_003291        TPP2
14  chr13  102868841      104052656     NM_024089      KDELC1
16  chr13  102868841      104052656     NR_026965   METTL21EP
17  chr13  102868841      104052656     NR_036486   FGF14-IT1
18  chr13  102868841      104052656     NR_036487   FGF14-AS2
19  chr13  102868841      104052656     NR_125912   FGF14-AS1
20  chr17   47815938       47950465  NM_001077503        TAC4
21  chr17   47815938       47950465  NM_001199158        KAT7
22  chr17   47815938       47950465  NM_001242791    FLJ45513
23  chr17   47815938       47950465     NM_030802     FAM117A,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr4   94015239       94471448     NM_001510        GRID2
1   chr4   94139639       94467581     NM_001510        GRID2
2   chr5  142413872      142533582  NM_001135608     ARHGAP26
3   chr6  162723986      162895199     NM_013988        PARK2
4   chr7  146572647      146687457     NM_014141      CNTNAP2
5   chr9    4501467        5143509  NM_001039395      SPATA6L
6   chr9    4501467        5143509  NM_001199853          AK3
9   chr9    4501467        5143509  NM_001286699         RCL1
11  chr9    4501467        5143509  NM_001322194         JAK2
14  chr9    4501467        5143509     NM_004170       SLC1A1
17  chr9    4501467        5143509     NM_017913      CDC37L1
18  chr9    4501467        5143509     NM_203453        PLPP6
19  chr9    4501467        5143509     NR_029836     MIR101-2
20  chr9    4501467        5143509     NR_121597  CDC37L1-AS1
21  chr9   16790535       17871694  NM_001114395        CNTLN
23  chr9   16790535       17871694     NM_003026       SH3GL2
24  chr9   16790535       17871694     NM_017637         BNC2
26  chr9  103423856      104290741     NM_000035        ALDOB
27  chr9  103423856      104290741  NM_001127610         BAAT
28  chr9  103423856      104290741  NM_001303107      TMEM246
31  chr9  103423856      104290741     NM_017753       PLPPR1
32  chr9  103423856      104290741     NM_019051       MRPL50
34  chr9  103423856      104290741     NR_103480       ZNF189
35  chr9  103423856      104290741     NR_121573  TMEM246-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   48290333       48416570  NM_001004702     OR4C3
1   chr11   48290333       48416570  NM_001004725     OR4S1
2   chr11   48290333       48416570  NM_001005513    OR4C45
3   chr11   48262386       48368827  NM_001004702     OR4C3
4   chr11   48262386       48368827  NM_001004725     OR4S1
5   chr11   48262386       48368827  NM_001004726     OR4X1
6   chr11   48262386       48368827  NM_001004727     OR4X2
7   chr11   48262386       48368827  NM_001005513    OR4C45
8    chr7   21407235       21614209  NM_001277115    DNAH11
9    chr7   21407235       21614209  NM_001326542       SP4
10   chr7   21407235       21614209     NR_031594   MIR1183,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr19   33710615       33827322  NM_001285829         CEBPA
1  chr19   33710615       33827322     NM_019849       SLC7A10
2  chr19   33710615       33827322     NR_026887     CEBPA-AS1
3   chr2   49052480       49435876     NM_181446          FSHR
4   chr2   49052480       49435876     NR_107011      MIR548BA
5   chr2   81615479       81748638     NR_110161  LOC100507201,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   76045256       76222280     NM_000016         ACADM
1    chr1   76045256       76222280  NM_001130058       SLC44A5
5    chr1   76045256       76222280     NR_130749        DLSTP1
6   chr11   36889412       38066833     NR_135110  LOC105376633
7   chr15   42698045       42875775  NM_001130447         HAUS2
8   chr15   42698045       42875775  NM_001284306        ZNF106
11  chr15   42698045       42875775     NM_003825        SNAP23
12  chr15   42698045       42875775     NM_020759        STARD9
13  chr15   42698045       42875775     NM_153260        LRRC57
14  chr15   42698045       42875775     NM_173087         CAPN3
17  chr17    3369301        3525261     NM_000049          ASPA
19  chr17    3369301        3525261  NM_001170696       SPATA22
24  chr17    3369301        3525261     NM_013276          SHPK
25  chr17    3369301        3525261     NM_018727         TRPV1
30  chr17    3369301        3525261     NM_145068         TRPV3
31  chr19   47852801       48373362     NM_000554           CRX
32  chr19   47852801       48373362  NM_001009813         MEIS3
33  chr19   47852801       48373362  NM_001277075        ZNF541
34  chr19   47852801       48373362  NM_001291296          KPTN
37  chr19   47852801       48373362     NM_003009       SELENOW
38  chr19   47852801       48373362     NM_014601          EHD2
39  chr19   47852801       48373362     NM_014681         DHX34
40  chr19   47852801       48373362     NM_015063        SLC8A2
41  chr19   47852801       48373362     NM_015710       GLTSCR2
42  chr19   47852801       48373362     NM_015711       GLTSCR1
43  chr19   47852801       48373362     NM_198479         TPRX1
44  chr19   47852801       48373362     NR_003048       SNORD23
45  chr19   47852801       48373362     NR_038452      NAPA-AS1
46  chr19   47852801       48373362     NR_038457          NAPA
47  chr19   47852801       48373362     NR_132382   GLTSCR2-AS1,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr3  189574880      191238023  NM_001083308       PYDC2
1   chr3  189574880      191238023  NM_001114979        TP63
3   chr3  189574880      191238023  NM_001134418        P3H2
4   chr3  189574880      191238023  NM_001146686        GMNC
5   chr3  189574880      191238023  NM_001167928      IL1RAP
11  chr3  189574880      191238023     NM_006580      CLDN16
13  chr3  189574880      191238023     NM_021101       CLDN1
14  chr3  189574880      191238023     NM_174908      CCDC50
15  chr3  189574880      191238023     NM_198152       UTS2B
16  chr3  189574880      191238023     NM_198184        OSTN
17  chr3  189574880      191238023     NM_207316     TMEM207
18  chr3  189574880      191238023     NR_024343      SNAR-I
19  chr3  189574880      191238023     NR_120606  LINCR-0002
20  chr3  189574880      191238023     NR_126419    P3H2-AS1
21  chr3  189574880      191238023     NR_133663    OSTN-AS1
22  chr4   88573979       88686533     NM_004407        DMP1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   99180916       99291766  NM_001243270     CNTN5
2  chr11  108538555      108663278     NM_004398     DDX10
3   chr2  109889594      110129125  NM_001099289    SH3RF3
4   chr2  109889594      110129125     NR_036224   MIR4266,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12  130270639      130420982     NM_133448   TMEM132D
1   chr16   80802261       81240319  NM_001076780     PKD1L2
2   chr16   80802261       81240319  NM_001100625      CENPN
3   chr16   80802261       81240319  NM_001100873   C16orf46
7   chr16   80802261       81240319  NM_001300728      ATMIN
8   chr16   80802261       81240319     NM_004483       GCSH
11  chr16   80802261       81240319     NM_020188       CMC2
14  chr16   80802261       81240319     NM_152342      CDYL2
15  chr16   80802261       81240319     NR_131948    PRCAT47
16   chr6  162886640      163007020     NM_013988      PARK2
17   chr9   41485966       41618568  NM_001113541  SPATA31A5
18   chr9   41485966       41618568     NM_015667  SPATA31A7
19   chr9   41485966       41618568     NR_003528    ZNF658B
20   chr9   41485966       41618568     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr2   75857160       76022891  NM_001201334     GCFC2
3   chr2   75857160       76022891     NM_014763    MRPL19
4  chr20   14698570       14864301     NM_080676   MACROD2
5   chr4   94088624       94248892     NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  153053350      153159054  NM_001014291        SPRR2G
1    chr1  153053350      153159054  NM_001014450        SPRR2F
2    chr1  153053350      153159054  NM_001024209        SPRR2E
3    chr1  153053350      153159054     NR_003062        SPRR2C
4    chr1  153053350      153159054     NR_110685  LOC101928009
5   chr20   14779804       14925911     NM_080676       MACROD2
6   chr20   14779804       14925911     NR_037841   MACROD2-AS1
8    chr7   21210685       21498402  NM_001326542           SP4
10   chr8  110237919      110670150  NM_001099743          SYBU
15   chr8  110237919      110670150  NM_001128211        NUDCD1
16   chr8  110237919      110670150  NM_001193557          ENY2
17   chr8  110237919      110670150  NM_001278938         EBAG9
18   chr8  110237919      110670150  NM_001317989  LOC100132813
23   chr8  110237919      110670150     NM_177531       PKHD1L1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21561687       21818128  NM_001077180        METTL9
1   chr16   21561687       21818128  NM_001161683          OTOA
3   chr16   21561687       21818128     NM_005849         IGSF6
6   chr16   21561687       21818128     NR_003370        RRN3P1
7   chr16   21561687       21818128     NR_110930  LOC101927814
8    chr3    2342927        3129195  NM_001206955         CNTN4
11   chr3    2342927        3129195     NM_175726         IL5RA
12   chr3    2342927        3129195     NR_046554     CNTN4-AS1
13   chr4  169203872      169328964  NM_001012967        DDX60L
15   chr4  169203872      169328964     NM_017631         DDX60
16   chr7    6875060        7191236     NR_034022  LOC100131257
17   chr7    6875060        7191236     NR_037454       MIR3683,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0   chr1  102429697      102661326  NR_110211      OLFM3
1  chr10   96486834       96945141  NM_000769    CYP2C19
2  chr10   96486834       96945141  NM_000770     CYP2C8
3  chr10   96486834       96945141  NM_000771     CYP2C9
4  chr10   96486834       96945141  NM_000772    CYP2C18
5  chr15   21090717       21193939  NR_028506      NF1P2
6  chr15   21090717       21193939  NR_040094  LINC01193
7  chr15   21090717       21193939  NR_049895  MIR5701-2
8  chr18   61816713       61918582  NR_033881  LOC284294
9  chr18   61816713       61918582  NR_033983  LINC01538,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   27107885       27294770  NM_001080406   C12orf71
1   chr12   27107885       27294770  NM_001171887   FGFR1OP2
3   chr12   27107885       27294770  NM_001271811      MED21
4   chr12   27107885       27294770     NM_016551     TM7SF3
5    chr2   69559458       69704895  NM_001244710      GFPT1
6    chr2   69559458       69704895     NM_014911       AAK1
7    chr2   69559458       69704895     NM_015700       NFU1
8    chr4  167627322      167899660  NM_001204353     SPOCK3
11   chr9   80078463       80332474     NM_002072       GNAQ
12   chr9   80078463       80332474     NM_004297      GNA14
13   chr9   80078463       80332474     NR_121184  GNA14-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   42233792       43764398  NM_001346175     LRFN5
1   chr7   64119167       64588844  NM_001007253    ERV3-1
2   chr7   64119167       64588844  NM_001160183    ZNF138
3   chr7   64119167       64588844  NM_001282360    ZNF107
4   chr7   64119167       64588844     NM_015852    ZNF117
5   chr7   64119167       64588844     NM_021148    ZNF273
6   chr7   64119167       64588844     NR_033416    CCT6P3
9   chr7   64119167       64588844     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   99895458      100806334  NM_001130928         MEF2A
1   chr15   99895458      100806334  NM_001284400        LRRC28
2   chr15   99895458      100806334  NM_001284417        LYSMD4
6   chr15   99895458      100806334     NM_139057      ADAMTS17
7   chr15   99895458      100806334     NR_003260       DNM1P46
8   chr15   99895458      100806334     NR_135737     LOC400464
9    chr2  216235519      216637002  NM_001306129           FN1
12   chr2  216235519      216637002     NR_037195     LINC00607
13   chr2  216235519      216637002     NR_110607  LOC102724849
14   chr2  216235519      216637002     NR_132383     LINC01614
15   chr7   64073313       64218020  NM_001282360        ZNF107
16   chr7   64073313       64218020     NR_077227  LOC100128885
18   chr7   64073313       64218020     NR_106898       MIR6839
19   chr7  110647281      111238436  NM_001099658         LRRN3
20   chr7  110647281      111238436  NM_001244606        IMMP2L
22   chr8   58047026       58304471     NR_026772     LINC00588
23   chr8   58047026       58304471     NR_038235     LINC01606
24   chr8   58047026       58304471     NR_038874     LOC286177
25   chr8   58047026       58304471     NR_125818  LOC101929488
26   chr9   41866300       42037910     NR_003670        FGF7P3
27   chr9   41866300       42037910     NR_015363         GLIDR
30   chr9   41866300       42037910     NR_126048  LOC102724238
31   chr9   41866300       42037910     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   89238548       89673171     NR_047490  LINC00560
1   chr16   68611942       68768470  NM_001317195       CDH3
2   chr22   32444680       32685698     NM_000343     SLC5A1
3   chr22   32444680       32685698  NM_001010859   C22orf42
4   chr22   32444680       32685698  NM_001098527      RFPL2
9   chr22   32444680       32685698     NM_014227     SLC5A4
10  chr22   32444680       32685698     NR_040114    AP1B1P1
11   chr7  157309003      157459689  NM_001308267     PTPRN2
13   chr7  157309003      157459689     NR_029689   MIR153-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17    3306592        3417551     NM_000049          ASPA
2   chr17    3306592        3417551  NM_001170696       SPATA22
7   chr17    3306592        3417551     NM_003554         OR1E2
8   chr17    3306592        3417551     NM_012373         OR3A3
10  chr17    3306592        3417551     NM_145068         TRPV3
11   chr3    1172275        1298840  NM_001289081         CNTN6
12   chr6  162706506      162848141     NM_013988         PARK2
13   chr8   57871927       59546354     NM_000780        CYP7A1
14   chr8   57871927       59546354  NM_001077619        UBXN2B
15   chr8   57871927       59546354  NM_001144772         NSMAF
17   chr8   57871927       59546354  NM_001330537         SDCBP
20   chr8   57871927       59546354     NM_017813        IMPAD1
21   chr8   57871927       59546354     NM_147189       FAM110B
22   chr8   57871927       59546354     NR_026772     LINC00588
23   chr8   57871927       59546354     NR_038235     LINC01606
24   chr8   57871927       59546354     NR_038874     LOC286177
25   chr8   57871927       59546354     NR_105005  LOC101929528
26   chr8   57871927       59546354     NR_125818  LOC101929488
27   chr8   57871927       59546354     NR_130934     LINC01602
28   chr8   57871927       59546354     NR_134276     LOC286178,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1   60568600       61774680  NM_001145511           NFIA
3    chr1   60568600       61774680     NR_104180       NFIA-AS1
4    chr1   60568600       61774680     NR_110617       NFIA-AS2
6    chr1   60568600       61774680     NR_110628   LOC101926964
7   chr13   31505230       31676652     NM_152325          TEX26
8   chr13   31505230       31676652     NR_038287      TEX26-AS1
10  chr15   20684813       20901577  NM_001145004       GOLGA6L6
11  chr15   20684813       20901577     NR_027411       GOLGA8CP
12  chr15   20684813       20901577     NR_027992         NBEAP1
13  chr15   20684813       20901577     NR_036432        HERC2P3
14   chr7   29505340       30468530  NM_001080529          WIPF3
15   chr7   29505340       30468530  NM_001145513          SCRN1
17   chr7   29505340       30468530  NM_001197026        PLEKHA8
19   chr7   29505340       30468530  NM_001293069           CHN2
23   chr7   29505340       30468530  NM_001329997          PRR15
25   chr7   29505340       30468530     NM_006092           NOD1
27   chr7   29505340       30468530     NM_017946         FKBP14
29   chr7   29505340       30468530     NM_147128          ZNRF2
30   chr7   29505340       30468530     NM_152793          MTURN
32   chr7   29505340       30468530     NR_002186  DKFZP586I1420
33   chr7   29505340       30468530     NR_024278      LOC646762
34   chr7   29505340       30468530     NR_027347        ZNRF2P2
35   chr7   29505340       30468530     NR_036482      DPY19L2P3
36   chr7   29505340       30468530     NR_037513       MIR550B1
37   chr7   29505340       30468530     NR_039600       MIR550A3
38   chr7   29505340       30468530     NR_108081      LINC01176
39   chr7   29505340       30468530     NR_136267   LOC105375218
40   chr9  132338143      132909437     NM_000113          TOR1A
41   chr9  132338143      132909437  NM_001136557         GPR107
42   chr9  132338143      132909437  NM_001286796          NTMT1
47   chr9  132338143      132909437     NM_004878          PTGES
48   chr9  132338143      132909437     NM_006676          USP20
49   chr9  132338143      132909437     NM_014506          TOR1B
50   chr9  132338143      132909437     NM_015033          FNBP1
51   chr9  132338143      132909437     NM_016307          PRRX2
52   chr9  132338143      132909437     NM_016520        C9orf78
53   chr9  132338143      132909437     NM_177999           ASB6
54   chr9  132338143      132909437     NM_199350        C9orf50
55   chr9  132338143      132909437     NR_106914        MIR6855
56   chr9  132338143      132909437     NR_132102      PRRX2-AS1
57   chr9  132338143      132909437     NR_135124      LOC401554, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3    2341920        2598115  NM_001206955     CNTN4
2  chr7   64090865       64388525  NM_001160183    ZNF138
3  chr7   64090865       64388525  NM_001282360    ZNF107
4  chr7   64090865       64388525     NM_021148    ZNF273
7  chr7   64090865       64388525     NR_106898   MIR6839,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   47751268       48339106  NM_001113498      MDGA2
2  chr14   47751268       48339106     NR_037503    MIR548Y
3  chr14   47751268       48339106     NR_039996  LINC00648
5  chr20   14912556       15116754     NM_080676    MACROD2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   46897347       47017349  NM_001286761     RUBCNL
2   chr2   51284322       51420359     NR_135237  LOC730100,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16    6750335        6966468  NM_001142334        RBFOX1
3    chr2   97145981       97256009  NM_001285485        NEURL3
4    chr2   97145981       97256009  NM_001319085        ARID5A
7    chr2   97145981       97256009     NR_135564  LOC105373496
8   chr20   14741078       15093193     NM_080676       MACROD2
9   chr20   14741078       15093193     NR_037841   MACROD2-AS1
11   chr3  156031929      156158127  NM_001308217        KCNAB1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr17   14066666       14166825  NM_001007530    CDRT15
1  chr17   14066666       14166825     NM_001303     COX10
2  chr21   28135702       28333709     NM_006988   ADAMTS1
3  chr21   28135702       28333709     NM_007038   ADAMTS5
4  chr21   28135702       28333709     NR_039916   MIR4759
5   chr4   98892920       99033741     NM_174952     STPG2
6   chr9   38956796       39124700     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr21   22402726       23387113     NM_004540         NCAM2
1   chr21   22402726       23387113     NR_038872     LINC00317
2   chr21   22402726       23387113     NR_109958     LINC01425
3   chr21   22402726       23387113     NR_109959  LOC101927843
4   chr21   29473318       29721496     NR_126010     LOC284825
6   chr21   29473318       29721496     NR_126012  LOC101927973
7    chr4     108493         280795  NM_001039127        ZNF718
8    chr4     108493         280795  NM_001137608        ZNF732
11   chr4     108493         280795     NR_027481       ZNF876P,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   52023855       52665897     NR_135237     LOC730100
1  chr2   52023855       52665897     NR_135239  LOC105374596
2  chr9   28632811       28818179  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   99246537       99539642  NM_001243270       CNTN5
3    chr7  110314525      110448880  NM_001244606      IMMP2L
5    chr8     453886         846192  NM_001256113        TDRP
6    chr8     453886         846192  NM_001303100      ERICH1
7    chr8     453886         846192  NM_001346810      DLGAP2
10   chr8     453886         846192     NR_073397  ERICH1-AS1
11   chr8     453886         846192     NR_134292   LOC401442,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   28145827       28317346     NM_000275      OCA2
2  chr18   24725819       24839109  NM_001256316     CHST9
3   chr4   91114101       91217287  NM_001145065    CCSER1
5   chr8    7858303        8043671     NR_027424    FAM66E
6   chr8    7858303        8043671     NR_031689  MIR548I3,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr8   16470064       16908122  NM_019851     FGF20
1  chr8   16470064       16908122  NM_181723     MICU3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1    2847015        3024970     NM_080431        ACTRT2
1    chr1    2847015        3024970     NM_199454        PRDM16
2    chr1    2847015        3024970     NR_015440     LINC00982
4    chr1  241722781      241933870     NM_001821          CHML
5    chr1  241722781      241933870     NM_003679           KMO
6    chr1  241722781      241933870     NM_014322          OPN3
7    chr1  241722781      241933870     NM_144625         WDR64
8   chr13   63173569       63297511     NR_047029     LINC00448
9   chr14   19900227       20028946  NM_001145442         POTEM
10  chr14   19900227       20028946     NR_073459       BMS1P18
11  chr14   19900227       20028946     NR_110505  LOC100508046
12  chr14   19900227       20028946     NR_110526       DUXAP10
13  chr14   19900227       20028946     NR_122111     LINC01296
15  chr14   19900227       20028946     NR_133911       BMS1P22
16  chr20   14750012       14893394     NM_080676       MACROD2
17  chr20   14750012       14893394     NR_037841   MACROD2-AS1
19   chr6  162887349      164766265  NM_001080378         PACRG
21   chr6  162887349      164766265     NM_006775           QKI
22   chr6  162887349      164766265     NM_013988         PARK2
23   chr6  162887349      164766265     NR_028390     PACRG-AS1
24   chr6  162887349      164766265     NR_033862  DKFZp451B082
25   chr6  162887349      164766265     NR_037593          CAHM
26   chr6  162887349      164766265     NR_110871     PACRG-AS2
28   chr6  162887349      164766265     NR_122120     PACRG-AS3
29   chr6  162887349      164766265     NR_134620  LOC102724152
30   chr9   30364191       30869775     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   86278288       86475596     NM_013244        MGAT4C
1   chr14   38221002       40099918     NM_001049         SSTR1
2   chr14   38221002       40099918  NM_001079537      TRAPPC6B
3   chr14   38221002       40099918  NM_001247988          MIA2
5   chr14   38221002       40099918  NM_001310135          TTC6
7   chr14   38221002       40099918     NM_002687           PNN
8   chr14   38221002       40099918     NM_003616        GEMIN2
9   chr14   38221002       40099918     NM_006364        SEC23A
11  chr14   38221002       40099918     NM_175060       CLEC14A
12  chr14   38221002       40099918     NM_203301        FBXO33
14  chr14   38221002       40099918     NR_038935  LOC100288846
15  chr14   38221002       40099918     NR_039982     LINC00639
16  chr14   38221002       40099918     NR_135256  LOC105370457
17  chr14   38221002       40099918     NR_135286     LINC00517,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17     167957         334062  NM_001013672      C17orf97
1   chr17     167957         334062  NM_001190411        RPH3AL
2   chr17     167957         334062     NM_182705         RFLNB
3   chr17     167957         334062     NR_040011  LOC100506388
4   chr17     167957         334062     NR_136407  LOC105371430
5   chr17   48349024       48610622  NM_001166131          EME1
6   chr17   48349024       48610622  NM_001168215        TMEM92
7   chr17   48349024       48610622     NM_001267          CHAD
8   chr17   48349024       48610622  NM_001288968         ACSF2
9   chr17   48349024       48610622     NM_016504        MRPL27
10  chr17   48349024       48610622     NM_017957          EPN3
11  chr17   48349024       48610622     NM_018346         RSAD1
12  chr17   48349024       48610622     NM_018509        LRRC59
13  chr17   48349024       48610622     NM_022167         XYLT2
14  chr17   48349024       48610622     NM_032133       MYCBPAP
17  chr17   48349024       48610622     NR_125805    TMEM92-AS1
18   chr6   22003322       22105655     NR_015410        CASC15,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   48286386       48404635  NM_001004702         OR4C3
1  chr11   48286386       48404635  NM_001004725         OR4S1
2  chr11   48286386       48404635  NM_001005513        OR4C45
3  chr15   29735277       29928249     NM_015307      FAM189A1
4   chr6  136851589      136953816     NM_003980          MAP7
5   chr6  136851589      136953816     NM_005923        MAP3K5
6   chr6  136851589      136953816     NR_125858  LOC101928461
7   chr7  110604229      110881623  NM_001099658         LRRN3
8   chr7  110604229      110881623  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   58451505       59318390     NR_037490       MIR3924
1   chr10  117394885      117611149     NM_207303        ATRNL1
2   chr14   21768605       21892109  NM_001170629          CHD8
3   chr14   21768605       21892109     NM_007192       SUPT16H
4   chr14   21768605       21892109     NM_020366       RPGRIP1
6   chr14   21768605       21892109     NR_002916        SNORD8
7   chr14   21768605       21892109     NR_003029        SNORD9
8   chr14   78341497       79413756  NM_001142545         ADCK1
9   chr14   78341497       79413756     NM_004796         NRXN3
11  chr21   30088706       31712662     NM_000830         GRIK1
12  chr21   30088706       31712662  NM_001077711     KRTAP27-1
13  chr21   30088706       31712662  NM_001085455     KRTAP24-1
14  chr21   30088706       31712662  NM_001128598     KRTAP25-1
15  chr21   30088706       31712662     NM_001186         BACH1
16  chr21   30088706       31712662  NM_001286619      MAP3K7CL
22  chr21   30088706       31712662  NM_001320724        RWDD2B
23  chr21   30088706       31712662  NM_001320766          LTN1
24  chr21   30088706       31712662     NM_006447         USP16
25  chr21   30088706       31712662     NM_006585          CCT8
26  chr21   30088706       31712662     NM_012131        CLDN17
27  chr21   30088706       31712662     NM_013240        N6AMT1
32  chr21   30088706       31712662     NM_199328         CLDN8
33  chr21   30088706       31712662     NM_203405     KRTAP26-1
35  chr21   30088706       31712662     NR_027021     GRIK1-AS1
36  chr21   30088706       31712662     NR_027072     LINC00189
38  chr21   30088706       31712662     NR_033368     GRIK1-AS2
39  chr21   30088706       31712662     NR_038855     LINC00307
40  chr21   30088706       31712662     NR_046564     BACH1-IT2
42   chr4   86110592       87707382  NM_001025616      ARHGAP24
44   chr4   86110592       87707382  NM_001318067        MAPK10
49   chr4   86110592       87707382     NM_006264        PTPN13
51   chr4   86110592       87707382     NR_039656       MIR4451
52   chr4   86110592       87707382     NR_039657       MIR4452
53   chr4   86110592       87707382     NR_110879  LOC101929064
54   chr7   63968083       64614993  NM_001007253        ERV3-1
55   chr7   63968083       64614993  NM_001130022        ZNF680
56   chr7   63968083       64614993  NM_001160183        ZNF138
57   chr7   63968083       64614993  NM_001282360        ZNF107
58   chr7   63968083       64614993     NM_015852        ZNF117
59   chr7   63968083       64614993     NM_021148        ZNF273
61   chr7   63968083       64614993     NR_033245     LOC641746
62   chr7   63968083       64614993     NR_033416        CCT6P3
64   chr7   63968083       64614993     NR_077227  LOC100128885
66   chr7   63968083       64614993     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr20   14772853       14920135  NM_080676      MACROD2
1  chr20   14772853       14920135  NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88938377       89067166  NM_001099338      NUTM2A
1   chr10   88938377       89067166  NM_001330112      FAM35A
3   chr10   88938377       89067166     NR_024397  NUTM2A-AS1
4   chr11   60260632       60578472  NM_001278320      MS4A13
5   chr11   60260632       60578472  NM_001310141      MS4A18
6   chr11   60260632       60578472     NM_017716      MS4A12
7   chr11   60260632       60578472     NM_031457       MS4A8
8   chr11   60260632       60578472     NM_152717      MS4A15
9   chr11   60260632       60578472     NM_206893      MS4A10
10  chr11   60260632       60578472     NR_026946   LINC00301,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  193334257      193472021     NR_125789     LINC01031
1   chr7  110660662      110797635  NM_001099658         LRRN3
2   chr7  110660662      110797635  NM_001244606        IMMP2L
4   chr7  143023412      143176365     NM_000083         CLCN1
5   chr7  143023412      143176365  NM_001278297       FAM131B
6   chr7  143023412      143176365  NM_001322263  LOC100507507
7   chr7  143023412      143176365     NM_003461           ZYX
8   chr7  143023412      143176365     NM_005232         EPHA1
10  chr7  143023412      143176365     NM_176883       TAS2R41
11  chr7  143023412      143176365     NM_177437       TAS2R60
12  chr7  143023412      143176365     NR_033897     EPHA1-AS1
13  chr7  143023412      143176365     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   15044045       15427441  NM_001270767          NTAN1
1   chr16   15044045       15427441  NM_001285445         PDXDC1
6   chr16   15044045       15427441  NM_001301064           RRN3
8   chr16   15044045       15427441     NM_006985         NPIPA1
9   chr16   15044045       15427441     NR_037466      MIR3180-4
10  chr16   15044045       15427441     NR_106775      MIR6511B1
11  chr16   15044045       15427441     NR_106965      MIR6511B2
12  chr16   15044045       15427441     NR_123721  PKD1P6-NPIPP1
14  chr16   15044045       15427441     NR_125434   LOC100505915
15  chr20   14617542       14729058     NM_080676        MACROD2
16  chr20   23391606       24260463     NM_000099           CST3
17  chr20   23391606       24260463  NM_001008693           CST9
18  chr20   23391606       24260463  NM_001283018           NAPB
20  chr20   23391606       24260463     NM_001322           CST2
21  chr20   23391606       24260463     NM_001898           CST1
22  chr20   23391606       24260463     NM_001899           CST4
23  chr20   23391606       24260463     NM_001900           CST5
24  chr20   23391606       24260463     NM_005492           CST8
25  chr20   23391606       24260463     NM_080610          CST9L
26  chr20   23391606       24260463     NM_080830          CST11
27  chr20   23391606       24260463     NM_138283          CSTL1
28  chr20   23391606       24260463     NM_178311         GGTLC1
30  chr20   23391606       24260463     NR_001279         CST13P
31  chr20   23391606       24260463     NR_040102       FLJ33581
32   chr5   12464863       13076936     NR_033383      LINC01194
33   chr5   12464863       13076936     NR_039659        MIR4454,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   79036948       79235115     NM_006417        IFI44
1    chr1   79036948       79235115     NM_006820       IFI44L
3   chr14   67456266       67974558  NM_001256550         MPP5
4   chr14   67456266       67974558     NM_004094       EIF2S1
5   chr14   67456266       67974558     NM_015994      ATP6V1D
6   chr14   67456266       67974558     NM_016445        PLEK2
7   chr14   67456266       67974558     NM_020806         GPHN
8   chr14   67456266       67974558     NM_173526       FAM71D
9   chr14   67456266       67974558     NM_182526     TMEM229B
10  chr14   67456266       67974558     NR_049879      MIR5694
11  chr22   19889986       20079871     NM_000754         COMT
14  chr22   19889986       20079871  NM_001190326        DGCR8
15  chr22   19889986       20079871  NM_001282512       TXNRD2
16  chr22   19889986       20079871  NM_001283116       TANGO2
19  chr22   19889986       20079871     NM_001670        ARVCF
22  chr22   19889986       20079871     NR_029706       MIR185
23  chr22   19889986       20079871     NR_031706      MIR1306
24  chr22   19889986       20079871     NR_037412      MIR3618
25  chr22   19889986       20079871     NR_039918      MIR4761
26   chr8   19764714       19873572     NM_000237          LPL
27   chr9   11813399       13108677     NM_000550        TYRP1
28   chr9   11813399       13108677  NM_001261407         MPDZ
30   chr9   11813399       13108677     NM_203403      LURAP1L
31   chr9   11813399       13108677     NR_125775  LURAP1L-AS1
32   chr9   11813399       13108677     NR_132976     SNORD137,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   78161120       79717361     NM_000199          SGSH
1   chr17   78161120       79717361  NM_001009811        CEP131
2   chr17   78161120       79717361  NM_001037984      SLC38A10
3   chr17   78161120       79717361  NM_001080395          AATK
4   chr17   78161120       79717361  NM_001086521       NDUFAF8
5   chr17   78161120       79717361  NM_001164637         ENDOV
7   chr17   78161120       79717361  NM_001166349      SLC26A11
8   chr17   78161120       79717361  NM_001256071        RNF213
9   chr17   78161120       79717361  NM_001257970        CARD14
10  chr17   78161120       79717361  NM_001270888      SLC25A10
11  chr17   78161120       79717361  NM_001272086  LOC100130370
12  chr17   78161120       79717361  NM_001290212       TSPAN10
13  chr17   78161120       79717361  NM_001291324        BAHCC1
14  chr17   78161120       79717361  NM_001304999         OXLD1
15  chr17   78161120       79717361  NM_001329608         ARL16
17  chr17   78161120       79717361     NM_002522         NPTX1
18  chr17   78161120       79717361     NM_002602         PDE6G
19  chr17   78161120       79717361     NM_002949        MRPL12
20  chr17   78161120       79717361     NM_004712           HGS
22  chr17   78161120       79717361     NM_006340        BAIAP2
23  chr17   78161120       79717361     NM_012418         FSCN2
25  chr17   78161120       79717361     NM_017921        NPLOC4
26  chr17   78161120       79717361     NM_020761         RPTOR
29  chr17   78161120       79717361     NM_024591         CHMP6
32  chr17   78161120       79717361     NM_144679        TEPSIN
33  chr17   78161120       79717361     NM_178520       TMEM105
34  chr17   78161120       79717361     NM_199287       CCDC137
35  chr17   78161120       79717361     NR_026857    BAIAP2-AS1
36  chr17   78161120       79717361     NR_027255      AATK-AS1
37  chr17   78161120       79717361     NR_029376  LOC100294362
38  chr17   78161120       79717361     NR_029897        MIR338
39  chr17   78161120       79717361     NR_030394        MIR657
40  chr17   78161120       79717361     NR_031652       MIR1250
41  chr17   78161120       79717361     NR_033338       FAAP100
42  chr17   78161120       79717361     NR_036151       MIR3065
43  chr17   78161120       79717361     NR_036152       MIR3186
44  chr17   78161120       79717361     NR_037688         ACTG1
45  chr17   78161120       79717361     NR_038080     LINC00482
46  chr17   78161120       79717361     NR_039883       MIR4730
47  chr17   78161120       79717361     NR_039894       MIR4740
49  chr17   78161120       79717361     NR_106844       MIR6786
50  chr17   78161120       79717361     NR_110852  LOC101928855
55  chr17   78161120       79717361     NR_135654  LOC105371925
56  chr20   14615677       14718325     NM_080676       MACROD2
57  chr20   23347009       23605539  NM_001008693          CST9
58  chr20   23347009       23605539  NM_001283018          NAPB
59  chr20   23347009       23605539  NM_001317019          GZF1
60  chr20   23347009       23605539     NM_005492          CST8
62  chr20   23347009       23605539     NM_080610         CST9L
63  chr20   23347009       23605539     NM_080830         CST11
64  chr20   23347009       23605539     NM_138283         CSTL1
65  chr20   23347009       23605539     NR_001279        CST13P
66   chr8    4184286        4348251     NM_033225         CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67671428       68411549  NM_001127384        CTNNA3
2   chr11  131401477      131519517  NM_001048209           NTM
3   chr11  131401477      131519517     NR_110140  LOC101929653
4   chr11  132236619      132621455  NM_001012393         OPCML
7   chr14   47902348       48034950  NM_001113498         MDGA2
8   chr17   64527730       64720262     NM_002737         PRKCA
9   chr21   23411679       23678670     NR_038400     LINC00308
10  chr21   23411679       23678670     NR_109959  LOC101927843
11   chr4   94175530       94808004     NM_001510         GRID2
12   chr4   94175530       94808004     NM_005172         ATOH1
13   chr5  175371134      175610597  NM_001265615       FAM153B
14   chr5  175371134      175610597     NM_032361         THOC3
15   chr5  175371134      175610597     NR_036494     LOC643201
16   chr5  175371134      175610597     NR_038402  LOC100507387
17   chr5  175371134      175610597     NR_103794  LOC100996385,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145355873      145468023  NM_001277444         NBPF9
1    chr1  145355873      145468023  NM_001278267        NBPF20
2    chr1  145355873      145468023  NM_001302371        NBPF10
3    chr1  145355873      145468023  NM_001313972         TXNIP
5    chr1  145355873      145468023     NM_032305       POLR3GL
6    chr1  145355873      145468023     NM_145277          HFE2
7    chr1  145355873      145468023     NR_104217       NBPF25P
8    chr1  145355873      145468023     NR_125967  LOC101928979
9   chr13   62989111       63349926     NR_047029     LINC00448
10  chr15   28653363       28794823     NR_033351       GOLGA8F
11  chr15   28653363       28794823     NR_033353       GOLGA8G
12  chr15   28653363       28794823     NR_039734     MIR4509-3
14  chr16   82934948       83248957  NM_001220488         CDH13
16  chr16   82934948       83248957     NR_110937  LOC101928417,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   59088183       59445477  NM_001085487         MYSM1
1    chr1   59088183       59445477     NM_002228           JUN
2    chr1   59088183       59445477     NR_034014     LINC01135
3    chr1  245023404      245131074     NM_004501        HNRNPU
4    chr1  245023404      245131074     NR_111907  LOC101928068
5   chr10   81469964       81627575  NM_001278495        NUTM2B
6   chr10   81469964       81627575     NR_029407     LOC642361
7   chr10   81469964       81627575     NR_120611    NUTM2B-AS1
10   chr2  130558962      131298193  NM_001079530         CFC1B
11   chr2  130558962      131298193  NM_001099771         POTEF
12   chr2  130558962      131298193  NM_001142370        PTPN18
13   chr2  130558962      131298193  NM_001258307       CCDC74B
14   chr2  130558962      131298193  NM_001277406         POTEI
15   chr2  130558962      131298193  NM_001320304          IMP4
16   chr2  130558962      131298193  NM_001321118       CCDC115
18   chr2  130558962      131298193  NM_001330282         MZT2B
19   chr2  130558962      131298193     NM_017951         SMPD4
20   chr2  130558962      131298193     NM_032144         RAB6C
22   chr2  130558962      131298193     NM_207312        TUBA3E
23   chr2  130558962      131298193     NR_026740     LOC389033
24   chr2  130558962      131298193     NR_026758        FAR2P1
25   chr2  130558962      131298193     NR_027313        TISP43
28   chr2  130558962      131298193     NR_033903       MED15P9
29   chr2  130558962      131298193     NR_033930     LOC646743
30   chr2  130558962      131298193     NR_036537     RAB6C-AS1
31   chr2  130558962      131298193     NR_046260        FAR2P2
32   chr2  130558962      131298193     NR_103761      CYP4F62P
33   chr2  130558962      131298193     NR_110285  LOC101927924
34   chr3  111622214      111842518  NM_001008273        TAGLN3
35   chr3  111622214      111842518  NM_001134437        PHLDB2
37   chr3  111622214      111842518  NM_001171747       C3orf52
38   chr3  111622214      111842518  NM_001272069        ABHD10
42   chr3  111622214      111842518     NM_152785         GCSAM
43   chr3  111622214      111842518     NR_026734       TMPRSS7
44   chr3  111622214      111842518     NR_030292        MIR567
45   chr8    3698922        3807273     NM_033225         CSMD1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12   80962202       81268266  NM_001145026         PTPRQ
1  chr12   80962202       81268266  NM_001324423         LIN7A
2  chr12   80962202       81268266     NM_002469          MYF6
3  chr12   80962202       81268266     NM_005593          MYF5
4  chr12   80962202       81268266     NR_030348        MIR617
5  chr12   80962202       81268266     NR_120468     LINC01490
6  chr14   26964120       27246959     NM_002515         NOVA1
8  chr14   26964120       27246959     NR_110033  LOC101927062
9  chr20   14662316       14764649     NM_080676       MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12822436       13211191  NM_001009611       PRAMEF4
1    chr1   12822436       13211191  NM_001010889       PRAMEF6
2    chr1   12822436       13211191  NM_001010890       PRAMEF9
3    chr1   12822436       13211191  NM_001012276       PRAMEF8
4    chr1   12822436       13211191  NM_001013407       PRAMEF5
5    chr1   12822436       13211191  NM_001013631      HNRNPCL1
6    chr1   12822436       13211191  NM_001080830      PRAMEF12
7    chr1   12822436       13211191  NM_001099850      PRAMEF18
8    chr1   12822436       13211191  NM_001100631      PRAMEF22
9    chr1   12822436       13211191  NM_001136561      HNRNPCL2
10   chr1   12822436       13211191  NM_001146181      HNRNPCL3
11   chr1   12822436       13211191  NM_001146344      PRAMEF11
12   chr1   12822436       13211191  NM_001294139       PRAMEF1
13   chr1   12822436       13211191  NM_001302551      HNRNPCL4
14   chr1   12822436       13211191  NM_001306072      PRAMEF26
15   chr1   12822436       13211191  NM_001310134      PRAMEF25
17   chr1   12822436       13211191     NM_023014       PRAMEF2
18   chr1   12822436       13211191     NR_111945     PRAMEF36P
20   chr2  236604312      236709106  NM_001244888         AGAP1
22  chr20   14690124       14810936     NM_080676       MACROD2
23   chr4   94196573       94343827     NM_001510         GRID2
24   chr4   94186248       94602237     NM_001510         GRID2
25   chr4  125296711      125474421     NR_110838  LOC101927087
26   chr5   59655096       61279052     NM_000082         ERCC8
28   chr5   59655096       61279052  NM_001048249        SMIM15
29   chr5   59655096       61279052  NM_001145208       DEPDC1B
30   chr5   59655096       61279052  NM_001165899         PDE4D
31   chr5   59655096       61279052     NM_020928        ZSWIM6
32   chr5   59655096       61279052     NM_024930        ELOVL7
33   chr5   59655096       61279052     NM_173667       C5orf64
34   chr5   59655096       61279052     NM_174889       NDUFAF2
35   chr5   59655096       61279052     NR_024617         PART1
38   chr5   59655096       61279052     NR_105000  LOC100506526
39   chr5   59655096       61279052     NR_109908  CTC-436P18.1
40   chr5   59655096       61279052     NR_109910  LOC101928651
42   chr5  104417417      105028528     NR_000039       RAB9BP1
43   chr8   16615389       19143058     NM_000015          NAT2
44   chr8   16615389       19143058     NM_000662          NAT1
45   chr8   16615389       19143058  NM_001001925         MTUS1
47   chr8   16615389       19143058  NM_001008539        SLC7A2
48   chr8   16615389       19143058  NM_001127505         ASAH1
49   chr8   16615389       19143058  NM_001145152        VPS37A
54   chr8   16615389       19143058  NM_001315507          PCM1
55   chr8   16615389       19143058  NM_001322087         CNOT7
60   chr8   16615389       19143058     NM_004686         MTMR7
61   chr8   16615389       19143058     NM_006207        PDGFRL
63   chr8   16615389       19143058     NM_015310          PSD3
64   chr8   16615389       19143058     NM_016353        ZDHHC2
65   chr8   16615389       19143058     NM_019851         FGF20
68   chr8   16615389       19143058     NM_181723         MICU3
69   chr8   16615389       19143058     NM_201552          FGL1
72   chr8   16615389       19143058     NR_036103       MIR548V
73   chr8   16615389       19143058     NR_038919  LOC100128993
74   chr8   16615389       19143058     NR_125429  LOC101929066,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17      72013         383217  NM_001013672      C17orf97
1   chr17      72013         383217  NM_001190411        RPH3AL
2   chr17      72013         383217     NM_182705         RFLNB
3   chr17      72013         383217     NR_040011  LOC100506388
4   chr17      72013         383217     NR_136407  LOC105371430
5   chr18    8149835        8795137  NM_001025300         RAB12
6   chr18    8149835        8795137     NM_002845         PTPRM
7   chr18    8149835        8795137     NM_015210         MTCL1
8   chr18    8149835        8795137     NR_024419  LOC100192426
9   chr18    8149835        8795137     NR_120598        GACAT2
10  chr20   40506789       41126053     NM_133170         PTPRT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67233983       67501806     NM_000695       ALDH3B2
1   chr11   67233983       67501806     NM_000852         GSTP1
3   chr11   67233983       67501806  NM_001078650       TMEM134
4   chr11   67233983       67501806  NM_001166102        NDUFV1
5   chr11   67233983       67501806  NM_001243750         NUDT8
6   chr11   67233983       67501806  NM_001302959           AIP
7   chr11   67233983       67501806  NM_001318496         CABP2
9   chr11   67233983       67501806     NM_004910       PITPNM1
10  chr11   67233983       67501806     NM_005851       CDK2AP2
11  chr11   67233983       67501806     NM_005995         TBX10
12  chr11   67233983       67501806     NM_080658          ACY3
14  chr11   67233983       67501806     NR_033791        DOC2GP
16  chr11   67233983       67501806     NR_106810       MIR6752
17  chr11   67233983       67501806     NR_130935      C11orf72
18  chr11   67301418       67408773     NM_000852         GSTP1
19  chr11   67301418       67408773  NM_001166102        NDUFV1
20  chr11   67301418       67408773  NM_001243750         NUDT8
21  chr11   67301418       67408773     NM_005995         TBX10
23  chr11   67301418       67408773     NR_033791        DOC2GP
24  chr11   67301418       67408773     NR_130935      C11orf72
25  chr22   20067291       20424283  NM_001190326         DGCR8
26  chr22   20067291       20424283  NM_001242313      TMEM191B
27  chr22   20067291       20424283  NM_001243537       CCDC188
28  chr22   20067291       20424283  NM_001278639        RANBP1
31  chr22   20067291       20424283     NM_013373        ZDHHC8
32  chr22   20067291       20424283     NM_022727        TRMT2A
33  chr22   20067291       20424283     NM_023004         RTN4R
34  chr22   20067291       20424283     NM_033257        DGCR6L
35  chr22   20067291       20424283     NR_003563       PI4KAP1
36  chr22   20067291       20424283     NR_026919     LINC00896
37  chr22   20067291       20424283     NR_031618       MIR1286
38  chr22   20067291       20424283     NR_031706       MIR1306
39  chr22   20067291       20424283     NR_037412       MIR3618
40  chr22   20067291       20424283     NR_038460     LOC284865
41  chr22   20067291       20424283     NR_106874       MIR6816
42  chr22   20067291       20424283     NR_136560       FAM230A
43  chr22   20067291       20424283     NR_136572  LOC101927859
44   chr7   17711167       17853891     NM_015132         SNX13
45   chr9   39111071       39308379     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   40864604       42983733  NM_001346175      LRFN5
1  chr14   40864604       42983733     NR_109757  LOC644919
3  chr14   47782907       47883671  NM_001113498      MDGA2
6  chr18   63320974       63436382  NM_001317214       CDH7,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   20824799       21303998  NM_001288713     NELL1
1   chr11   67285293       67417435     NM_000852     GSTP1
2   chr11   67285293       67417435  NM_001166102    NDUFV1
3   chr11   67285293       67417435  NM_001243750     NUDT8
4   chr11   67285293       67417435  NM_001318496     CABP2
5   chr11   67285293       67417435     NM_005995     TBX10
6   chr11   67285293       67417435     NM_080658      ACY3
8   chr11   67285293       67417435     NR_033791    DOC2GP
9   chr11   67285293       67417435     NR_130935  C11orf72
10  chr17   14041869       14335854  NM_001007530    CDRT15
11  chr17   14041869       14335854     NM_001303     COX10
12  chr17   14041869       14335854     NM_006041  HS3ST3B1
13  chr17   14041869       14335854     NR_026880  MGC12916
14   chr6  162795281      163373182  NM_001080378     PACRG
16   chr6  162795281      163373182     NM_013988     PARK2
17   chr7  111235132      111379706     NM_014705     DOCK4, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr10   27571072       27728390  NM_001034842       PTCHD3
1  chr10   27571072       27728390     NR_138082      ARMC4P1
2  chr15   36186415       36414948     NR_039735      MIR4510
3  chr19   23875168       24085581     NM_138286       ZNF681
4  chr19   23875168       24085581     NR_003662      RPSAP58
5  chr20   14672651       14907555     NM_080676      MACROD2
6  chr20   14672651       14907555     NR_037841  MACROD2-AS1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr5  109783488      109926876  NM_001039763   TMEM232
1  chr5  109783488      109926876     NR_031644  MIR548F3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145268719      145774303  NM_001012758        NUDT17
1    chr1  145268719      145774303  NM_001039888      ANKRD34A
2    chr1  145268719      145774303  NM_001097612        GPR89A
3    chr1  145268719      145774303  NM_001184795        PEX11B
4    chr1  145268719      145774303  NM_001201325         PDZK1
5    chr1  145268719      145774303  NM_001277444         NBPF9
6    chr1  145268719      145774303  NM_001278267        NBPF20
7    chr1  145268719      145774303  NM_001280799       ANKRD35
8    chr1  145268719      145774303  NM_001302371        NBPF10
9    chr1  145268719      145774303  NM_001303040        ITGA10
10   chr1  145268719      145774303  NM_001303456        POLR3C
11   chr1  145268719      145774303  NM_001313972         TXNIP
13   chr1  145268719      145774303     NM_005105         RBM8A
14   chr1  145268719      145774303     NM_006099         PIAS3
17   chr1  145268719      145774303     NM_007053         CD160
18   chr1  145268719      145774303     NM_014455        RNF115
19   chr1  145268719      145774303     NM_032305       POLR3GL
20   chr1  145268719      145774303     NM_145277          HFE2
21   chr1  145268719      145774303     NM_153713         LIX1L
22   chr1  145268719      145774303     NM_203458      NOTCH2NL
23   chr1  145268719      145774303     NR_002328        GNRHR2
27   chr1  145268719      145774303     NR_104217       NBPF25P
28   chr1  145268719      145774303     NR_106794       MIR6736
29   chr1  145268719      145774303     NR_125967  LOC101928979
30  chr11   89053973       89157159  NM_001143837          NOX4
35  chr20   14685615       14791746     NM_080676       MACROD2
36   chr4    8587818        8769279  NM_001014447           CPZ
37   chr4    8587818        8769279     NM_080819         GPR78
39   chr4  169204504      169394608  NM_001012967        DDX60L
41   chr4  169204504      169394608     NM_017631         DDX60,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr5  119922194      120355056  NM_001300783         PRR16
3  chr5  125585935      125692394     NR_105039  LOC101927488
4  chr7   21429872       21885877  NM_001277115        DNAH11
5  chr7   21429872       21885877  NM_001326542           SP4
6  chr7   21429872       21885877     NR_031594       MIR1183,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  162824030      162944424     NM_178550    CCDC190
1    chr1  242679005      242822387     NM_152666       PLD5
2   chr13   59294001       60477308  NM_001042517     DIAPH3
7   chr13   88020323       88141464     NR_033829  MIR4500HG
8   chr19   24271526       24482415  NM_001278661     ZNF254
11  chr19   24271526       24482415     NR_003603   HAVCR1P1,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr15   28164290       28357743  NM_000275         OCA2
2  chr15   28164290       28357743  NM_004667        HERC2
3  chr20   14793183       14922753  NM_080676      MACROD2
4  chr20   14793183       14922753  NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63144119       63255056     NR_047029  LINC00448
1   chr16    6373191        6964346  NM_001142334     RBFOX1
4   chr17   78131774       78264933     NM_000199       SGSH
5   chr17   78131774       78264933  NM_001166349   SLC26A11
6   chr17   78131774       78264933  NM_001256071     RNF213
7   chr17   78131774       78264933  NM_001257970     CARD14
12   chr2   51160162       51333331  NM_001330079      NRXN1
15   chr2   51160162       51333331     NR_135237  LOC730100
16   chr9   29844503       31365932     NR_046204  LINC01242,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   81523251       81633063     NR_029407     LOC642361
1  chr10   81523251       81633063     NR_120611    NUTM2B-AS1
4  chr15   98232510       98426749     NR_024172     LINC00923
5  chr18    8123831        8605575     NM_002845         PTPRM
6  chr18    8123831        8605575     NR_024419  LOC100192426
7  chr18   63770643       64564831     NM_021153         CDH19
8   chr3   41370994       41570444  NM_001322500          ULK4,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   11549846       12174593  NM_001080491       USP6NL
1   chr10   11549846       12174593  NM_001142627      SEC61A2
4   chr10   11549846       12174593     NM_015542         UPF2
5   chr10   11549846       12174593     NM_018706       DHTKD1
6   chr10   11549846       12174593     NM_024693       ECHDC3
8   chr10   11549846       12174593     NM_153256      PROSER2
9   chr10   11549846       12174593     NR_038222  PROSER2-AS1
10  chr10   11549846       12174593     NR_039699     MIR548AK
12   chr5   66249877       66374637  NM_001164664        MAST4
17   chr5   66249877       66374637     NR_111908    MAST4-AS1
18   chr7    2652808        2755518  NM_001284355         AMZ1
19   chr7    2652808        2755518  NM_001287501         IQCE
21   chr7    2652808        2755518     NM_025250        TTYH3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  244316411      245847017  NM_001012970      C1orf100
1   chr1  244316411      245847017     NM_001126          ADSS
2   chr1  244316411      245847017  NM_001143943        EFCAB2
3   chr1  244316411      245847017  NM_001242340      C1orf101
5   chr1  244316411      245847017  NM_001297746         DESI2
6   chr1  244316411      245847017  NM_001312871         COX20
8   chr1  244316411      245847017     NM_004501        HNRNPU
9   chr1  244316411      245847017     NM_018012        KIF26B
12  chr1  244316411      245847017     NR_111907  LOC101928068
13  chr1  244316411      245847017     NR_132782      SNORA100
14  chr3  111607377      111953046  NM_001008273        TAGLN3
15  chr3  111607377      111953046  NM_001134437        PHLDB2
17  chr3  111607377      111953046  NM_001171747       C3orf52
18  chr3  111607377      111953046  NM_001272069        ABHD10
19  chr3  111607377      111953046  NM_001320531        SLC9C1
23  chr3  111607377      111953046     NM_152785         GCSAM
24  chr3  111607377      111953046     NR_026734       TMPRSS7
25  chr3  111607377      111953046     NR_030292        MIR567
26  chr5   19044798       19716327  NM_001291956         CDH18,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   84114748       84315056  NM_001142699       DLG2
2   chr2  185127072      185479187     NM_194250    ZNF804A
3   chr2  185127072      185479187     NR_039638  MIR548AE1
4  chr20   14644495       14777097     NM_080676    MACROD2, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [], Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   82748533       83109348  NM_001164465     GOLGA6L10
1   chr15   82748533       83109348  NM_001291420      GOLGA6L9
4   chr15   82748533       83109348     NR_004847      UBE2Q2P2
5   chr15   82748533       83109348     NR_026811     GOLGA2P10
7   chr15   82748533       83109348     NR_045529     ADAMTS7P1
8   chr15   82748533       83109348     NR_102747     LOC727751
9   chr15   82748533       83109348     NR_111943         RPS17
11  chr15   82748533       83109348     NR_111962    GOLGA6L17P
12  chr15   82748533       83109348     NR_120378  LOC102724034
13   chr2  110226928      110469949  NM_001099289        SH3RF3
14   chr2  110226928      110469949  NM_001321504        SEPT10
16   chr2  110226928      110469949     NM_023016        SOWAHC
17   chr5  109775674      110366829  NM_001039763       TMEM232
18   chr5  109775674      110366829  NM_001303250      SLC25A46
20   chr5  109775674      110366829     NR_031644      MIR548F3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   31428883       31631398     NM_000379           XDH
1   chr2   31428883       31631398  NM_001145122        CAPN14
3   chr2   31428883       31631398     NM_014600          EHD3
4   chr2  181895013      182040479  NM_001278554        UBE2E3
7   chr2  181895013      182040479     NR_130784  LOC101927156
8   chr4  169248943      169559132  NM_001012967        DDX60L
9   chr4  169248943      169559132  NM_001166108         PALLD
12  chr5   93460192       93978411  NM_001145678      KIAA0825
13  chr5   93460192       93978411     NM_032290          SLF1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr17   14034164       14397490  NM_001007530     CDRT15
1   chr17   14034164       14397490     NM_001303      COX10
2   chr17   14034164       14397490     NM_006041   HS3ST3B1
3   chr17   14034164       14397490     NR_026880   MGC12916
4   chr22   19935120       20189595     NM_000754       COMT
7   chr22   19935120       20189595  NM_001190326      DGCR8
8   chr22   19935120       20189595  NM_001243537    CCDC188
9   chr22   19935120       20189595  NM_001278639     RANBP1
12  chr22   19935120       20189595  NM_001283116     TANGO2
15  chr22   19935120       20189595     NM_001670      ARVCF
17  chr22   19935120       20189595     NM_013373     ZDHHC8
18  chr22   19935120       20189595     NM_022727     TRMT2A
19  chr22   19935120       20189595     NR_029706     MIR185
20  chr22   19935120       20189595     NR_031706    MIR1306
21  chr22   19935120       20189595     NR_037412    MIR3618
22  chr22   19935120       20189595     NR_038460  LOC284865
23  chr22   19935120       20189595     NR_039918    MIR4761
24  chr22   19935120       20189595     NR_106874    MIR6816
25   chr7  110587198      111745639  NM_001099658      LRRN3
26   chr7  110587198      111745639  NM_001244606     IMMP2L
27   chr7  110587198      111745639     NM_014705      DOCK4
29   chr7  110587198      111745639     NR_103806  DOCK4-AS1
30   chr9   14888035       15031813     NM_144966      FREM1
31   chr9   14888035       15031813     NR_003920  LOC389705,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr20   14623477       14748200  NM_080676   MACROD2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   52771687       52946375  NM_001142495     MYO5A
1  chr15   52771687       52946375  NM_001286495   FAM214A
2  chr15   52771687       52946375  NM_001306191    ARPP19
7  chr16   21803435       21963147  NM_001310148    NPIPB4
8  chr16   21803435       21963147     NR_003370    RRN3P1
9   chr2   35656734       35905086     NR_039629  MIR548AD,   chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr7  110364413      110490978  NM_001244606       IMMP2L
2  chr9   11982149       13375458     NM_000550        TYRP1
3  chr9   11982149       13375458  NM_001261407         MPDZ
5  chr9   11982149       13375458     NM_203403      LURAP1L
6  chr9   11982149       13375458     NR_125775  LURAP1L-AS1
7  chr9   11982149       13375458     NR_132976     SNORD137,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   86087547       86230278     NM_017953        ZNHIT6
1    chr1   86087547       86230278     NM_152890       COL24A1
2   chr14   42039931       42413634  NM_001346175         LRFN5
3   chr16   83119747       83233985  NM_001220488         CDH13
5   chr19   23484361       23626281  NM_001300951         ZNF91
6   chr19   23484361       23626281     NR_126448     LINC01224
7    chr3    1952801        4615006  NM_001164675         SUMF1
8    chr3    1952801        4615006  NM_001168272         ITPR1
9    chr3    1952801        4615006  NM_001173482          CRBN
10   chr3    1952801        4615006  NM_001206955         CNTN4
12   chr3    1952801        4615006  NM_001243723        SETMAR
14   chr3    1952801        4615006  NM_001302946         TRNT1
15   chr3    1952801        4615006  NM_001324189         LRRN1
17   chr3    1952801        4615006     NM_175726         IL5RA
20   chr3    1952801        4615006     NR_046554     CNTN4-AS1
21   chr3    1952801        4615006     NR_046555     CNTN4-AS2
22   chr3    1952801        4615006     NR_108075     ITPR1-AS1
23   chr4    9049010        9462126  NM_001040448       DEFB131
24   chr4    9049010        9462126  NM_001242326      USP17L25
32   chr4    9049010        9462126  NM_001256852      USP17L10
33   chr4    9049010        9462126  NM_001256853      USP17L12
35   chr4    9049010        9462126  NM_001256854      USP17L11
38   chr4    9049010        9462126  NM_001256855      USP17L13
39   chr4    9049010        9462126  NM_001256857      USP17L17
40   chr4    9049010        9462126  NM_001256860      USP17L19
41   chr4    9049010        9462126  NM_001256861      USP17L20
42   chr4    9049010        9462126  NM_001256894      USP17L15
43   chr4    9049010        9462126     NR_027279      USP17L6P
44   chr4    9049010        9462126     NR_046416      USP17L9P
45   chr5   28275295       28378805     NR_134265  LOC105374698,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   20630069       20888378  NM_001145004  GOLGA6L6
1  chr15   20630069       20888378     NR_027411  GOLGA8CP
2  chr15   20630069       20888378     NR_027992    NBEAP1
3  chr15   20630069       20888378     NR_036432   HERC2P3
4   chr5  104396025      104508050     NR_000039   RAB9BP1,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0   chr1  237477875      238066953  NM_001035          RYR2
1   chr1  237477875      238066953  NM_021186           ZP4
2   chr1  237477875      238066953  NR_027247  LOC100130331
3   chr1  237477875      238066953  NR_039626       MIR4428
4  chr20   14676698       14825478  NM_080676       MACROD2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr17   21264899       21384844  NM_001194958       KCNJ18
1   chr17   21264899       21384844     NM_021012       KCNJ12
2    chr2   97388844       97499860  NM_001322354       LMAN2L
3    chr2   97388844       97499860     NM_017623        CNNM3
4    chr2   97388844       97499860     NM_020184        CNNM4
6    chr2   97388844       97499860     NR_036074      MIR3127
7   chr20   14415019       15573460  NM_001033087      MACROD2
9   chr20   14415019       15573460     NR_037841  MACROD2-AS1
11  chr20   14415019       15573460     NR_104193  MACROD2-IT1
12   chr3   60336852       61497345  NM_001320899         FHIT
13   chr3   60336852       61497345     NR_128708     MIR548BB
14   chr7   64080708       65743851     NM_000048          ASL
15   chr7   64080708       65743851     NM_000181         GUSB
16   chr7   64080708       65743851  NM_001007253       ERV3-1
18   chr7   64080708       65743851  NM_001160183       ZNF138
19   chr7   64080708       65743851  NM_001282360       ZNF107
20   chr7   64080708       65743851  NM_001287532        ZNF92
22   chr7   64080708       65743851     NM_003596        TPST1
23   chr7   64080708       65743851     NM_015852       ZNF117
24   chr7   64080708       65743851     NM_021148       ZNF273
25   chr7   64080708       65743851     NM_173517     VKORC1L1
26   chr7   64080708       65743851     NR_002961      SNORA22
27   chr7   64080708       65743851     NR_003110       CCT6P1
28   chr7   64080708       65743851     NR_024548         CRCP
29   chr7   64080708       65743851     NR_027392      INTS4P2
30   chr7   64080708       65743851     NR_033416       CCT6P3
31   chr7   64080708       65743851     NR_038378    LOC441242
35   chr7   64080708       65743851     NR_106898      MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr16   14776028       14910205  NM_001277323    NPIPA3
2   chr16   14776028       14910205  NM_001277324    NPIPA2
4   chr16   14776028       14910205     NR_133651   PLA2G10
5    chr7   80182128       80513974     NM_000072      CD36
13   chr7   80182128       80513974     NM_006379    SEMA3C,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  102408115      102528601     NR_110211      OLFM3
1   chr14   42084867       42194175  NM_001346175      LRFN5
2    chr7   80063504       80302417     NM_000072       CD36
5    chr7   80063504       80302417  NM_001102386      GNAT3
11   chr7  121691181      121794617  NM_001206838     PTPRZ1
12   chr7  121691181      121794617     NM_005763       AASS
13   chr9   31312122       31428715     NR_135134  LINC01243,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   48405289       48558242  NM_001005512    OR4A47
1   chr19   57925788       58235423  NM_001023561    ZNF749
2   chr19   57925788       58235423  NM_001098491    ZNF419
3   chr19   57925788       58235423  NM_001144068    ZNF772
4   chr19   57925788       58235423  NM_001199295    ZNF549
5   chr19   57925788       58235423  NM_001270938    ZNF551
6   chr19   57925788       58235423  NM_001277090    ZNF550
7   chr19   57925788       58235423  NM_001304334    ZNF773
9   chr19   57925788       58235423  NM_001321145      ZIK1
10  chr19   57925788       58235423  NM_001321375    ZNF671
11  chr19   57925788       58235423  NM_001321981    ZNF530
12  chr19   57925788       58235423  NM_001322306    ZNF211
13  chr19   57925788       58235423  NM_001330617     ZNF17
14  chr19   57925788       58235423     NM_003435    ZNF134
16  chr19   57925788       58235423     NM_017879    ZNF416
17  chr19   57925788       58235423     NM_020633     VN1R1
19  chr19   57925788       58235423     NM_152677    ZSCAN4
20  chr19   57925788       58235423     NR_110975    ZNF154
23   chr9    9975141       10076473     NM_002839     PTPRD
24   chr9  116539648      116721534  NM_001318041    ZNF618,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr21   28157235       28260095     NM_006988   ADAMTS1
1   chr4   69154927       69276228  NM_001031732    YTHDC1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr19   47804850       47933908  NM_001009813     MEIS3
1   chr19   47804850       47933908  NM_001271749     C5AR2
5   chr19   47804850       47933908     NM_001736     C5AR1
6   chr19   47804850       47933908     NM_014681     DHX34
7   chr19   47804850       47933908     NM_015063    SLC8A2
9    chr3    5997282        7178189     NM_181874      GRM7
10   chr3    5997282        7178189     NR_110123  GRM7-AS3
12   chr3    5997282        7178189     NR_131906  GRM7-AS2
13   chr7    6825529        6935392  NM_001099697  RSPH10B2
14   chr7    6825529        6935392     NM_198097     CCZ1B
15   chr7   64137814       64276860  NM_001160183    ZNF138
16   chr7   64137814       64276860  NM_001282360    ZNF107
19   chr7   64137814       64276860     NR_106898   MIR6839
20   chr7  110697195      110866652  NM_001099658     LRRN3
21   chr7  110697195      110866652  NM_001244606    IMMP2L
23   chr8  100587792      102023282  NM_001029860    FBXO43
24   chr8  100587792      102023282  NM_001135699     YWHAZ
27   chr8  100587792      102023282  NM_001270377   ANKRD46
30   chr8  100587792      102023282  NM_001280539    RNF19A
31   chr8  100587792      102023282  NM_001286692     RGS22
33   chr8  100587792      102023282     NM_002568    PABPC1
34   chr8  100587792      102023282     NM_003114     SPAG1
36   chr8  100587792      102023282     NM_004374     COX6C
37   chr8  100587792      102023282     NM_005034    POLR2K
39   chr8  100587792      102023282     NM_017890    VPS13B
41   chr8  100587792      102023282     NM_152628     SNX31
44   chr8  100587792      102023282     NR_031675  MIR1273A
45   chr8  100587792      102023282     NR_039681   MIR4471
46   chr8  100587792      102023282     NR_106992   MIR7705,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   68584476       68910135  NM_001305204      ZFP90
2   chr16   68584476       68910135  NM_001317184       CDH1
3   chr16   68584476       68910135  NM_001317195       CDH3
4   chr16   68584476       68910135     NM_024562     TANGO6
5   chr16   68584476       68910135     NR_106988  MIR7641-2
6   chr19   34648609       34903675  NM_001289789        GPI
9   chr19   34648609       34903675     NM_014686   KIAA0355
10  chr19   34648609       34903675     NM_015578     LSM14A
11  chr19   34648609       34903675     NM_032346     PDCD2L
12   chr2   78829505       79403167  NM_001008387      REG3G
13   chr2   78829505       79403167     NM_002580      REG3A
14   chr2   78829505       79403167     NM_002909      REG1A
15   chr2   78829505       79403167     NM_006507      REG1B
17   chr2   78829505       79403167     NR_002714     REG1CP
18   chr6  162850772      163226113  NM_001080378      PACRG
20   chr6  162850772      163226113     NM_013988      PARK2
21   chr9   11968311       12699706     NM_000550      TYRP1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   68614354       68826475  NM_001317184           CDH1
1   chr16   68614354       68826475  NM_001317195           CDH3
2   chr16   68614354       68826475     NR_106988      MIR7641-2
3   chr19    9388190        9652945  NM_001172650  ZNF559-ZNF177
4   chr19    9388190        9652945  NM_001172651         ZNF177
5   chr19    9388190        9652945  NM_001202406         ZNF559
8   chr19    9388190        9652945  NM_001271314         ZNF266
9   chr19    9388190        9652945  NM_001300883         ZNF426
11  chr19    9388190        9652945     NM_152476         ZNF560
12  chr19    9388190        9652945     NM_198535         ZNF699
13  chr19    9388190        9652945     NR_134920   LOC101928238
14   chr2  107668856      107852009     NR_049853       MIR548AU
15   chr8   48446618       48649447  NM_001080394          SPIDR,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  185865102      186148073     NM_031935         HMCN1
1  chr17   21867721       21978571     NR_027084      FLJ36000
2   chr2  216207995      216494692  NM_001306129           FN1
4   chr2  216207995      216494692     NM_004044          ATIC
6   chr2  216207995      216494692     NR_037195     LINC00607
7   chr2  216207995      216494692     NR_110607  LOC102724849
8   chr5   16890464       17058443     NM_012334         MYO10,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr9   74648716       75986505     NM_000689    ALDH1A1
1   chr9   74648716       75986505     NM_000700      ANXA1
2   chr9   74648716       75986505  NM_001102420     ZFAND5
3   chr9   74648716       75986505  NM_001128618    C9orf57
4   chr9   74648716       75986505  NM_001242505        GDA
7   chr9   74648716       75986505     NM_138691       TMC1
8   chr9   74648716       75986505     NR_110952  LINC01504
10  chr9   74648716       75986505     NR_121120  LINC01474,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   82162648       82276228  NM_001297704     ADGRL2
2   chr15   28551080       28717217     NM_004667      HERC2
3   chr15   28551080       28717217     NR_033351    GOLGA8F
4   chr15   28551080       28717217     NR_033353    GOLGA8G
5   chr15   28551080       28717217     NR_039734  MIR4509-3
6   chr19    1131524        1427339     NM_000156       GAMT
7   chr19    1131524        1427339     NM_000455      STK11
8   chr19    1131524        1427339  NM_001001975      ATP5D
9   chr19    1131524        1427339  NM_001100122      SBNO2
10  chr19    1131524        1427339     NM_001280      CIRBP
13  chr19    1131524        1427339     NM_001405      EFNA2
15  chr19    1131524        1427339     NM_017914   C19orf24
16  chr19    1131524        1427339     NM_024407     NDUFS7
17  chr19    1131524        1427339     NM_032853       MUM1
19  chr19    1131524        1427339     NM_152769      CBARP
20  chr19    1131524        1427339     NM_170711     DAZAP1
21  chr19    1131524        1427339     NM_177401       MIDN
24  chr19    1131524        1427339     NR_027271  CIRBP-AS1
25   chr9   30378147       30530664     NR_046204  LINC01242,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr9   20786435       20939685     NM_017794         FOCAD
1  chr9   28673574       29075920  NM_001258282        LINGO2
3  chr9   28673574       29075920     NR_030597        MIR876
4  chr9   28673574       29075920     NR_030618        MIR873
5  chr9   67160598       67489900     NR_002817        AQP7P1
6  chr9   67160598       67489900     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   10514069       10820185  NM_001256160    ATF7IP2
1  chr16   10514069       10820185     NM_001424       EMP2
2  chr16   10514069       10820185     NM_144674      TEKT5
4   chr2  185155685      185293072     NR_039638  MIR548AE1
5   chr5   16054371       16158751  NM_001102562    MARCH11,     chrom  cnv_start  cnv_terminate       tx_name        gene_name
0   chr16   21818836       22194066  NM_001164579         C16orf52
1   chr16   21818836       22194066  NM_001310148           NPIPB4
2   chr16   21818836       22194066     NM_003366           UQCRC2
3   chr16   21818836       22194066     NM_173615            VWA3A
4   chr16   21818836       22194066     NM_173806            PDZD9
5   chr16   21818836       22194066     NR_003370           RRN3P1
6    chr2   24957040       25309155  NM_001013663           PTRHD1
7    chr2   24957040       25309155  NM_001198559          DNAJC27
8    chr2   24957040       25309155  NM_001319099            EFR3B
9    chr2   24957040       25309155  NM_001320613            ADCY3
10   chr2   24957040       25309155  NM_001322101            CENPO
11   chr2   24957040       25309155     NM_003743            NCOA1
13   chr2   24957040       25309155     NR_034113      DNAJC27-AS1
14   chr2   97438491       97539398     NM_016466          ANKRD39
15   chr2   97438491       97539398     NM_017623            CNNM3
16   chr2   97438491       97539398     NM_017789           SEMA4C
17   chr2   97438491       97539398     NM_020184            CNNM4
18   chr2   97438491       97539398     NM_144994          ANKRD23
19   chr2   97438491       97539398     NR_036074          MIR3127
20   chr2  110144605      112694525     NM_000272            NPHP1
21   chr2  110144605      112694525  NM_001037866            RGPD6
23   chr2  110144605      112694525  NM_001099289           SH3RF3
26   chr2  110144605      112694525  NM_001142807            ACOXL
27   chr2  110144605      112694525  NM_001204106          BCL2L11
29   chr2  110144605      112694525  NM_001205288            LIMS4
31   chr2  110144605      112694525  NM_001321504           SEPT10
33   chr2  110144605      112694525     NM_004336             BUB1
34   chr2  110144605      112694525     NM_005054            RGPD5
36   chr2  110144605      112694525     NM_005434             MALL
37   chr2  110144605      112694525     NM_006343            MERTK
38   chr2  110144605      112694525     NM_022662           ANAPC1
39   chr2  110144605      112694525     NM_023016           SOWAHC
41   chr2  110144605      112694525     NR_015395      MIR4435-2HG
43   chr2  110144605      112694525     NR_027063        LINC00116
44   chr2  110144605      112694525     NR_027142        LOC440895
46   chr2  110144605      112694525     NR_027145  LIMS3-LOC440895
48   chr2  110144605      112694525     NR_027244        LINC01106
49   chr2  110144605      112694525     NR_027467            LIMS3
51   chr2  110144605      112694525     NR_036225          MIR4267
52   chr2  110144605      112694525     NR_037626     LOC100507334
53   chr2  110144605      112694525     NR_039634        MIR4435-1
54   chr2  110144605      112694525     NR_039636        MIR4435-2
55   chr2  110144605      112694525     NR_039929        MIR4771-2
56   chr2  110144605      112694525     NR_039941        MIR4436B1
58   chr2  110144605      112694525     NR_046110        LINC01123
60   chr2  110144605      112694525     NR_122074        LOC400997
61   chr2  110144605      112694525     NR_132975         SNORD132
62   chr2  110144605      112694525     NR_135529     LOC105373553,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   68600682       68702448  NM_001305204     ZFP90
2  chr16   68600682       68702448  NM_001317195      CDH3
3   chr6   80895989       81063098     NM_000056    BCKDHB,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr18   35103884       35223595  NM_020180      CELF4
1   chr4   69281759       69487996  NM_001077    UGT2B17
2   chr4   69281759       69487996  NM_014058  TMPRSS11E
3   chr7   88227055       88839128  NM_152706    C7orf62
4   chr7   88227055       88839128  NM_181646    ZNF804B
5   chr9   39096775       39290670  NM_033655    CNTNAP3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2  110205085      110308054  NM_001099289    SH3RF3
1  chr2  110205085      110308054  NM_001321504    SEPT10
3  chr7   94227196       94495708  NM_001184962     PEG10
4  chr7   94227196       94495708  NM_001301139      SGCE
5  chr7  110580269      111165331  NM_001099658     LRRN3
6  chr7  110580269      111165331  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   49599124       50109822  NM_001323575         AGBL4
1   chr1   49599124       50109822     NR_046839     AGBL4-IT1
2   chr1   49599124       50109822     NR_125988  LOC101929721
3   chr2   34153277       34279242     NR_126403     LINC01317
4   chr2   52323025       52525679     NR_135237     LOC730100
5   chr7  110507309      110676585  NM_001244606        IMMP2L
7   chr8   57825208       58036620     NM_017813        IMPAD1
8   chr9   41458987       41571412  NM_001113541     SPATA31A5
9   chr9   41458987       41571412     NM_015667     SPATA31A7
10  chr9   41458987       41571412     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr20   14608428       14911169     NM_080676       MACROD2
1  chr20   14608428       14911169     NR_037841   MACROD2-AS1
3  chr20   14608428       14911169     NR_104193   MACROD2-IT1
4   chr7   69034030       69351870  NM_001127231         AUTS2
6   chr7   69034030       69351870     NR_108105  LOC100507468,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10  100619740      101004729  NM_001166244     HPSE2
1  chr10  100619740      101004729     NR_106762   MIR6507, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   54529445       54704869  NM_001080534        UNC13C
2  chr18   61795237       62651872     NR_027245     LINC00305
3  chr18   61795237       62651872     NR_033881     LOC284294
4  chr18   61795237       62651872     NR_033983     LINC01538
5   chr3  146595895      146708506     NR_135560  LOC101927866
6   chr7    6770027        6929583  NM_001099697      RSPH10B2
7   chr7    6770027        6929583     NM_198097         CCZ1B
8   chr7    6770027        6929583     NR_002217        PMS2CL,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   99224671       99340356  NM_001243270         CNTN5
2   chr6   95620567       96117604     NM_024641         MANEA
3   chr6   95620567       96117604     NR_047502     MANEA-AS1
5   chr8   58148347       58274718     NR_026772     LINC00588
6   chr8   58148347       58274718     NR_038874     LOC286177
7   chr8   58148347       58274718     NR_125818  LOC101929488,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr15   28241570       28345119  NM_000275          OCA2
2   chr8   58168654       58342267  NR_026772     LINC00588
3   chr8   58168654       58342267  NR_038874     LOC286177
4   chr8   58168654       58342267  NR_125818  LOC101929488,    chrom  cnv_start  cnv_terminate    tx_name   gene_name
0  chr13   18106154       19400685  NR_047508   LINC00417
1  chr13   18106154       19400685  NR_138091  ANKRD20A9P
2   chr6   91041919       91282937  NM_145332      MAP3K7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89695231       89813247  NM_001136486        TRIM64
1   chr11   89695231       89813247  NM_001195234       TRIM49C
2   chr11   89695231       89813247     NR_028346      TRIM53AP
3    chr2   97272444       98946871     NM_001079         ZAP70
4    chr2   97272444       98946871  NM_001115016        KANSL3
5    chr2   97272444       98946871  NM_001122646       FAM178B
6    chr2   97272444       98946871  NM_001164315       ANKRD36
8    chr2   97272444       98946871  NM_001293083        FER1L5
9    chr2   97272444       98946871  NM_001320849        FAHD2B
10   chr2   97272444       98946871  NM_001322354        LMAN2L
11   chr2   97272444       98946871  NM_001345864         VWA3B
12   chr2   97272444       98946871     NM_001862         COX5B
13   chr2   97272444       98946871     NM_005735        ACTR1B
14   chr2   97272444       98946871     NM_015348       TMEM131
15   chr2   97272444       98946871     NM_016466       ANKRD39
17   chr2   97272444       98946871     NM_017623         CNNM3
18   chr2   97272444       98946871     NM_017789        SEMA4C
19   chr2   97272444       98946871     NM_020184         CNNM4
20   chr2   97272444       98946871     NM_025190      ANKRD36B
23   chr2   97272444       98946871     NM_144994       ANKRD23
26   chr2   97272444       98946871     NR_036074       MIR3127
27   chr2   97272444       98946871     NR_038386     LINC01125
29   chr2   97272444       98946871     NR_103732  LOC100506076
33   chr2   97272444       98946871     NR_110209  LOC101927053
34   chr2   97272444       98946871     NR_130704  LOC100506123
37   chr7   64056256       64186121  NM_001282360        ZNF107
38   chr7   64056256       64186121     NR_077227  LOC100128885
40   chr7   64056256       64186121     NR_106898       MIR6839
41   chr7  110673111      110850828  NM_001099658         LRRN3
42   chr7  110673111      110850828  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr20   23310029       23461808  NM_001283018       NAPB
1  chr20   23310029       23461808  NM_001317019       GZF1
2  chr20   23310029       23461808     NM_013248       NXT1
4  chr20   23310029       23461808     NM_080830      CST11
5  chr20   23310029       23461808     NM_138283      CSTL1
6  chr20   23310029       23461808     NR_109884  LINC01431,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr19   57915950       58467072  NM_001023561    ZNF749
1   chr19   57915950       58467072  NM_001077426    ZNF586
2   chr19   57915950       58467072  NM_001098491    ZNF419
3   chr19   57915950       58467072  NM_001144068    ZNF772
4   chr19   57915950       58467072  NM_001144989    ZNF814
5   chr19   57915950       58467072  NM_001199295    ZNF549
6   chr19   57915950       58467072  NM_001204817    ZNF587
7   chr19   57915950       58467072  NM_001204818   ZNF587B
8   chr19   57915950       58467072  NM_001270938    ZNF551
9   chr19   57915950       58467072  NM_001277090    ZNF550
10  chr19   57915950       58467072  NM_001297734    ZNF417
11  chr19   57915950       58467072  NM_001304334    ZNF773
13  chr19   57915950       58467072  NM_001317029    ZNF418
14  chr19   57915950       58467072  NM_001321145      ZIK1
15  chr19   57915950       58467072  NM_001321375    ZNF671
16  chr19   57915950       58467072  NM_001321981    ZNF530
17  chr19   57915950       58467072  NM_001322306    ZNF211
18  chr19   57915950       58467072  NM_001330617     ZNF17
19  chr19   57915950       58467072     NM_003435    ZNF134
20  chr19   57915950       58467072     NM_005773    ZNF256
22  chr19   57915950       58467072     NM_017879    ZNF416
23  chr19   57915950       58467072     NM_020633     VN1R1
24  chr19   57915950       58467072     NM_024762    ZNF552
27  chr19   57915950       58467072     NM_152677    ZSCAN4
28  chr19   57915950       58467072     NM_173632    ZNF776
29  chr19   57915950       58467072     NR_024162  FKBP1AP1
30  chr19   57915950       58467072     NR_110975    ZNF154
33   chr3  131296166      131458155  NM_001289112     CPNE4,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3   41317606       41628919  NM_001322500      ULK4
2  chr6  162619618      162753766     NM_013988     PARK2
3  chr7  109502374      109728122     NR_003024   EIF3IP1, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   99913641      100215933  NM_001130928     MEF2A
1  chr15   99913641      100215933  NM_001284400    LRRC28
4   chr7  110349829      110455533  NM_001244606    IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr8   50565697       51009991  NM_001287813     SNTG1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145344597      145598608  NM_001012758        NUDT17
1    chr1  145344597      145598608  NM_001039888      ANKRD34A
2    chr1  145344597      145598608  NM_001184795        PEX11B
3    chr1  145344597      145598608  NM_001277444         NBPF9
4    chr1  145344597      145598608  NM_001278267        NBPF20
5    chr1  145344597      145598608  NM_001280799       ANKRD35
6    chr1  145344597      145598608  NM_001302371        NBPF10
7    chr1  145344597      145598608  NM_001303040        ITGA10
8    chr1  145344597      145598608  NM_001303456        POLR3C
9    chr1  145344597      145598608  NM_001313972         TXNIP
11   chr1  145344597      145598608     NM_005105         RBM8A
12   chr1  145344597      145598608     NM_006099         PIAS3
15   chr1  145344597      145598608     NM_032305       POLR3GL
16   chr1  145344597      145598608     NM_145277          HFE2
17   chr1  145344597      145598608     NM_153713         LIX1L
18   chr1  145344597      145598608     NR_002328        GNRHR2
22   chr1  145344597      145598608     NR_104217       NBPF25P
23   chr1  145344597      145598608     NR_106794       MIR6736
24   chr1  145344597      145598608     NR_125967  LOC101928979
25  chr15   99924973      100232844  NM_001130928         MEF2A
26  chr15   99924973      100232844  NM_001284400        LRRC28
29   chr3   17359232       17670381  NM_001134381        TBC1D5
31   chr6  155455468      155586114  NM_001001346        CLDN20
32   chr6  155455468      155586114  NM_001010927         TIAM2
34   chr6  155455468      155586114     NM_016020         TFB1M
35   chr7   71428271       72006945  NM_001017440         CALN1
37   chr9   39041734       39179455     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12802861       12909657  NM_001013631      HNRNPCL1
1    chr1   12802861       12909657  NM_001080830      PRAMEF12
2    chr1   12802861       12909657  NM_001146181      HNRNPCL3
3    chr1   12802861       12909657  NM_001146344      PRAMEF11
4    chr1   12802861       12909657  NM_001294139       PRAMEF1
5    chr1   12802861       12909657  NM_001302551      HNRNPCL4
7    chr1   12802861       12909657     NM_152290      C1orf158
8   chr12   16300844       16446316  NM_001170798       SLC15A5
9   chr22   19935200       20674431     NM_000754          COMT
12  chr22   19935200       20674431  NM_001190326         DGCR8
13  chr22   19935200       20674431  NM_001242313      TMEM191B
14  chr22   19935200       20674431  NM_001243537       CCDC188
15  chr22   19935200       20674431  NM_001278639        RANBP1
18  chr22   19935200       20674431  NM_001283116        TANGO2
21  chr22   19935200       20674431     NM_001670         ARVCF
23  chr22   19935200       20674431     NM_013373        ZDHHC8
24  chr22   19935200       20674431     NM_015672        RIMBP3
25  chr22   19935200       20674431     NM_022727        TRMT2A
26  chr22   19935200       20674431     NM_023004         RTN4R
27  chr22   19935200       20674431     NM_033257        DGCR6L
28  chr22   19935200       20674431     NR_003563       PI4KAP1
29  chr22   19935200       20674431     NR_026919     LINC00896
30  chr22   19935200       20674431     NR_029706        MIR185
31  chr22   19935200       20674431     NR_031618       MIR1286
32  chr22   19935200       20674431     NR_031706       MIR1306
33  chr22   19935200       20674431     NR_037412       MIR3618
34  chr22   19935200       20674431     NR_038460     LOC284865
35  chr22   19935200       20674431     NR_039918       MIR4761
36  chr22   19935200       20674431     NR_106874       MIR6816
37  chr22   19935200       20674431     NR_136560       FAM230A
38  chr22   19935200       20674431     NR_136569     LOC729461
39  chr22   19935200       20674431     NR_136572  LOC101927859
40   chr3    2368271        2614934  NM_001206955         CNTN4
42   chr9   28516077       28653798  NM_001258282        LINGO2
44   chr9  101913658      102143607     NM_004612        TGFBR1
45   chr9  101913658      102143607     NM_006808        SEC61B
46   chr9  101913658      102143607     NM_033087          ALG2
47   chr9  101913658      102143607     NR_102270          NAMA,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67991878       68118796  NM_001127384        CTNNA3
2   chr16   14799373       15032185  NM_001277323        NPIPA3
4   chr16   14799373       15032185  NM_001277324        NPIPA2
6   chr16   14799373       15032185     NM_006985        NPIPA1
7   chr16   14799373       15032185     NM_014287         NOMO1
8   chr16   14799373       15032185     NR_023387       ABCC6P2
9   chr16   14799373       15032185     NR_036140     MIR3179-1
10  chr16   14799373       15032185     NR_036141     MIR3180-1
11  chr16   14799373       15032185     NR_036142     MIR3180-2
12  chr16   14799373       15032185     NR_103772  LOC100288162
13  chr16   14799373       15032185     NR_106970     MIR6511A3
14  chr16   14799373       15032185     NR_107060     MIR6770-2
15  chr16   14799373       15032185     NR_128713     MIR3670-4
16   chr6  162720800      162872651     NM_013988         PARK2
17   chr9    6602116        6712161     NM_000170          GLDC,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr19   20294108       20431841     NM_052852        ZNF486
1    chr3   41360596       43206990     NM_000729           CCK
2    chr3   41360596       43206990  NM_001042646         TRAK1
3    chr3   41360596       43206990  NM_001099668        HIGD1A
5    chr3   41360596       43206990  NM_001129908       FAM198A
6    chr3   41360596       43206990  NM_001134656        ZNF662
8    chr3   41360596       43206990  NM_001201572        SEC22C
10   chr3   41360596       43206990  NM_001205272        KRBOX1
11   chr3   41360596       43206990  NM_001251882         VIPR1
16   chr3   41360596       43206990     NM_001296         ACKR2
17   chr3   41360596       43206990  NM_001304386         LYZL4
18   chr3   41360596       43206990  NM_001322500          ULK4
19   chr3   41360596       43206990     NM_004391        CYP8B1
20   chr3   41360596       43206990     NM_005385          NKTR
22   chr3   41360596       43206990     NM_016305        SS18L2
24   chr3   41360596       43206990     NM_020707         HHATL
25   chr3   41360596       43206990     NM_032806       POMGNT2
26   chr3   41360596       43206990     NM_144719        CCDC13
27   chr3   41360596       43206990     NM_145166        ZBTB47
28   chr3   41360596       43206990     NM_152393        KLHL40
31   chr3   41360596       43206990     NR_046654     VIPR1-AS1
32   chr3   41360596       43206990     NR_046732    CCDC13-AS1
33   chr3   41360596       43206990     NR_122033    KRBOX1-AS1
34   chr3   41360596       43206990     NR_122070     LOC729083
35   chr3   41360596       43206990     NR_125400  LOC101928323
36   chr7   14864468       15083589     NM_004080          DGKB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102384220      102550476     NR_110211         OLFM3
1    chr1  142838469      143233293     NR_110761  LOC102723769
2   chr13  113030223      113135017     NM_145248        SPACA7
3   chr15   20292824       21091718  NM_001145004      GOLGA6L6
4   chr15   20292824       21091718  NM_001277303        POTEB2
5   chr15   20292824       21091718     NM_207355        POTEB3
6   chr15   20292824       21091718     NR_027411      GOLGA8CP
7   chr15   20292824       21091718     NR_027992        NBEAP1
8   chr15   20292824       21091718     NR_036062     MIR3118-2
9   chr15   20292824       21091718     NR_036432       HERC2P3
10  chr15   20292824       21091718     NR_038836       CHEK2P2
12  chr20   40610374       40740109     NM_133170         PTPRT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245026462      245153452  NM_001143943        EFCAB2
2    chr1  245026462      245153452     NM_004501        HNRNPU
4    chr1  245026462      245153452     NR_111907  LOC101928068
5   chr14   61768787       61920850     NM_006255         PRKCH
6    chr4    9018293        9452916  NM_001040448       DEFB131
7    chr4    9018293        9452916  NM_001242326      USP17L25
15   chr4    9018293        9452916  NM_001256852      USP17L10
16   chr4    9018293        9452916  NM_001256853      USP17L12
18   chr4    9018293        9452916  NM_001256854      USP17L11
21   chr4    9018293        9452916  NM_001256855      USP17L13
22   chr4    9018293        9452916  NM_001256857      USP17L17
23   chr4    9018293        9452916  NM_001256860      USP17L19
24   chr4    9018293        9452916  NM_001256861      USP17L20
25   chr4    9018293        9452916  NM_001256894      USP17L15
26   chr4    9018293        9452916     NR_027279      USP17L6P
27   chr4    9018293        9452916     NR_046416      USP17L9P
28   chr7   64119732       64349967  NM_001160183        ZNF138
29   chr7   64119732       64349967  NM_001282360        ZNF107
32   chr7   64119732       64349967     NR_106898       MIR6839
33   chr9   25496849       25781982  NM_001004125         TUSC1
34   chr9   25496849       25781982     NR_121604     LINC01241,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   25815839       25971310     NM_024490        ATP10A
1   chr5  117373871      117490238     NR_104997  LOC102467224
2   chr7  110628767      110885208  NM_001099658         LRRN3
3   chr7  110628767      110885208  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr19   10273364       10809188     NM_000201       ICAM1
1   chr19   10273364       10809188  NM_001031734       FDX1L
2   chr19   10273364       10809188  NM_001103167       ZGLP1
3   chr19   10273364       10809188  NM_001111307       PDE4A
6   chr19   10273364       10809188  NM_001137673        ILF3
7   chr19   10273364       10809188  NM_001145056     SLC44A2
8   chr19   10273364       10809188  NM_001166215       S1PR5
10  chr19   10273364       10809188  NM_001281504       ATG4D
11  chr19   10273364       10809188  NM_001300887       AP1M2
12  chr19   10273364       10809188  NM_001318730       DNMT1
13  chr19   10273364       10809188  NM_001320608       ICAM3
15  chr19   10273364       10809188     NM_001544       ICAM4
16  chr19   10273364       10809188     NM_001800      CDKN2D
17  chr19   10273364       10809188     NM_003259       ICAM5
18  chr19   10273364       10809188     NM_003331        TYK2
19  chr19   10273364       10809188     NM_004230       S1PR2
21  chr19   10273364       10809188     NM_007065       CDC37
23  chr19   10273364       10809188     NM_012289       KEAP1
24  chr19   10273364       10809188     NM_015956       MRPL4
26  chr19   10273364       10809188     NM_023008        KRI1
29  chr19   10273364       10809188     NM_133452      RAVER1
32  chr19   10273364       10809188     NR_024333    ILF3-AS1
33  chr19   10273364       10809188     NR_031592     MIR1181
34  chr19   10273364       10809188     NR_031603     MIR1238
35  chr19   10273364       10809188     NR_036206     MIR4322
36   chr3  156095125      156260013  NM_001308197        SSR3
39   chr3  156095125      156260013  NM_001308217      KCNAB1
44   chr3  156095125      156260013     NR_046618  KCNAB1-AS1
45   chr6  162728906      162869947     NM_013988       PARK2
46   chr9   28500696       28678651  NM_001258282      LINGO2,      chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr16   26852750       28971879     NM_000086        CLN3
1    chr16   26852750       28971879     NM_000418        IL4R
2    chr16   26852750       28971879  NM_001024401        SBK1
4    chr16   26852750       28971879  NM_001042483       NUPR1
5    chr16   26852750       28971879     NM_001054     SULT1A2
6    chr16   26852750       28971879  NM_001145348        KDM8
7    chr16   26852750       28971879  NM_001145545    C16orf82
8    chr16   26852750       28971879  NM_001145795       SH2B1
10   chr16   26852750       28971879  NM_001199142       EIF3C
12   chr16   26852750       28971879  NM_001282524      NPIPB6
13   chr16   26852750       28971879  NM_001286075      ATP2A1
19   chr16   26852750       28971879  NM_001287251      NPIPB9
21   chr16   26852750       28971879  NM_001310136      NPIPB8
22   chr16   26852750       28971879  NM_001317856      EIF3CL
24   chr16   26852750       28971879  NM_001323901       GSG1L
25   chr16   26852750       28971879     NM_001520      GTF3C1
26   chr16   26852750       28971879     NM_001770        CD19
27   chr16   26852750       28971879     NM_003321        TUFM
29   chr16   26852750       28971879     NM_015171        XPO6
30   chr16   26852750       28971879     NM_015202    KIAA0556
32   chr16   26852750       28971879     NM_018690       APOBR
33   chr16   26852750       28971879     NM_021798       IL21R
35   chr16   26852750       28971879     NM_024816      RABEP2
36   chr16   26852750       28971879     NM_032815    NFATC2IP
37   chr16   26852750       28971879     NM_138414       SGF29
39   chr16   26852750       28971879     NM_145080      NSMCE1
40   chr16   26852750       28971879     NM_145659        IL27
41   chr16   26852750       28971879     NM_148416      ATXN2L
43   chr16   26852750       28971879     NM_177529     SULT1A1
47   chr16   26852750       28971879     NR_037158   IL21R-AS1
..     ...        ...            ...           ...         ...
52   chr16   26852750       28971879     NR_107058   MIR6862-2
54    chr8    7026172        8418520  NM_001040705    DEFB107B
56    chr8    7026172        8418520  NM_001080826       PRAG1
57    chr8    7026172        8418520  NM_001081551    DEFB103A
59    chr8    7026172        8418520  NM_001081552     SPAG11A
60    chr8    7026172        8418520  NM_001164457     ZNF705G
61    chr8    7026172        8418520  NM_001193630     ZNF705B
62    chr8    7026172        8418520  NM_001205266      DEFB4B
63    chr8    7026172        8418520  NM_001256871     USP17L3
64    chr8    7026172        8418520  NM_001256872     USP17L8
65    chr8    7026172        8418520  NM_001256873     USP17L1
66    chr8    7026172        8418520  NM_001256874     USP17L4
67    chr8    7026172        8418520  NM_001282478     PRR23D2
69    chr8    7026172        8418520  NM_001282479     PRR23D1
71    chr8    7026172        8418520     NM_004942      DEFB4A
72    chr8    7026172        8418520     NM_058200     SPAG11B
77    chr8    7026172        8418520     NM_080389    DEFB104A
79    chr8    7026172        8418520     NM_152250    DEFB105A
81    chr8    7026172        8418520     NM_152251    DEFB106A
83    chr8    7026172        8418520     NR_003668  DEFB109P1B
85    chr8    7026172        8418520     NR_024361    FAM86B3P
88    chr8    7026172        8418520     NR_027000   LINC00965
91    chr8    7026172        8418520     NR_027423      FAM66B
92    chr8    7026172        8418520     NR_027424      FAM66E
93    chr8    7026172        8418520     NR_031689    MIR548I3
94    chr8    7026172        8418520     NR_046343    FAM90A7P
96    chr8    7026172        8418520     NR_046351   FAM90A10P
97    chr9   28599079       28956561  NM_001258282      LINGO2
99    chr9   28599079       28956561     NR_030597      MIR876
100   chr9   28599079       28956561     NR_030618      MIR873

[64 rows x 5 columns], Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  186028107      186157789     NM_031935      HMCN1
1   chr22   32370374       32543035     NM_000343     SLC5A1
3   chr22   32370374       32543035     NR_040114    AP1B1P1
4    chr3    1128172        3606308  NM_001173482       CRBN
5    chr3    1128172        3606308  NM_001206955      CNTN4
7    chr3    1128172        3606308  NM_001289081      CNTN6
8    chr3    1128172        3606308  NM_001302946      TRNT1
10   chr3    1128172        3606308     NM_175726      IL5RA
13   chr3    1128172        3606308     NR_046554  CNTN4-AS1
14   chr3    1128172        3606308     NR_046555  CNTN4-AS2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr21   17814546       17953707     NR_027790   MIR99AHG
2   chr21   17814546       17953707     NR_029480   MIRLET7C
3   chr21   17814546       17953707     NR_029514     MIR99A
11   chr6  162857621      162975712     NM_013988      PARK2
12   chr7   64121710       64303151  NM_001160183     ZNF138
13   chr7   64121710       64303151  NM_001282360     ZNF107
16   chr7   64121710       64303151     NR_106898    MIR6839
17   chr9   14953024       15069695     NR_003920  LOC389705,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr19   47788360       47946862  NM_001009813     MEIS3
1  chr19   47788360       47946862  NM_001271749     C5AR2
5  chr19   47788360       47946862     NM_001736     C5AR1
6  chr19   47788360       47946862     NM_014681     DHX34
7  chr19   47788360       47946862     NM_015063    SLC8A2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  130280928      130903385  NM_001190971        PIWIL1
2   chr12  130280928      130903385     NM_007197         FZD10
3   chr12  130280928      130903385     NM_015347        RIMBP2
4   chr12  130280928      130903385     NM_133448      TMEM132D
5   chr12  130280928      130903385     NR_024457  LOC100190940
6   chr12  130280928      130903385     NR_033834     FZD10-AS1
7    chr5  150090742      150626566  NM_001135643         DCTN4
9    chr5  150090742      150626566  NM_001145805          IRGM
10   chr5  150090742      150626566     NM_001155         ANXA6
11   chr5  150090742      150626566  NM_001172831        ZNF300
13   chr5  150090742      150626566  NM_001252390         TNIP1
17   chr5  150090742      150626566  NM_001329790          GPX3
20   chr5  150090742      150626566     NM_015621        CCDC69
21   chr5  150090742      150626566     NM_032947         SMIM3
22   chr5  150090742      150626566     NR_026867      ZNF300P1
23   chr7   75105591       75267161  NM_001099415       POM121C
24   chr7   75105591       75267161  NM_001243198          HIP1
25   chr7   75105591       75267161  NM_001306141        SPDYE5
26   chr7   75105591       75267161     NR_028059        PMS2P3
27   chr7  125762038      126188611  NM_001127323          GRM8
29   chr9   30358831       30502219     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   79018975       79151056     NM_006417      IFI44
1    chr1   79018975       79151056     NM_006820     IFI44L
3   chr17    5536624        6346905  NM_001285402      AIPL1
6   chr17    5536624        6346905     NM_015253      WSCD1
7   chr17    5536624        6346905     NR_040000  LOC339166
8    chr4   71421741       71939960     NM_000788        DCK
9    chr4   71421741       71939960  NM_001037442      RUFY3
10   chr4   71421741       71939960  NM_001098477      GRSF1
12   chr4   71421741       71939960  NM_001244766      MOB1B
18   chr4   71421741       71939960     NM_016519       AMBN
19   chr4   71421741       71939960     NM_020368       UTP3
20   chr4   71421741       71939960     NM_031889       ENAM
21   chr4   71421741       71939960     NM_144646     JCHAIN
22   chr6  104434931      105312386  NM_001321080      HACE1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49127685       49256676  NM_001302082         BEND5
1    chr1   49127685       49256676  NM_001323575         AGBL4
2    chr1   97434803       98000676     NM_000110          DPYD
3    chr1   97434803       98000676     NR_046590      DPYD-AS1
4   chr20   14657032       14828043     NM_080676       MACROD2
5    chr9   41888276       42126973     NR_003670        FGF7P3
6    chr9   41888276       42126973     NR_015363         GLIDR
9    chr9   41888276       42126973     NR_126048  LOC102724238
10   chr9   41888276       42126973     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  134238260      134369228     NM_054025     B3GAT1
1   chr11  134238260      134369228     NM_138342     GLB1L2
2   chr11  134238260      134369228     NR_033852  LOC283177
3   chr20   25347055       25589605  NM_001042472     ABHD12
4   chr20   25347055       25589605  NM_001318226       NINL
6   chr20   25347055       25589605     NM_021067      GINS1
7    chr4  169247370      169532637  NM_001012967     DDX60L
8    chr4  169247370      169532637  NM_001166108      PALLD
10   chr9   20817906       20960265     NM_017794      FOCAD,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  224733363      226852492     NM_000120      EPHX1
1   chr1  224733363      226852492  NM_001003665       STUM
2   chr1  224733363      226852492  NM_001008493       ENAH
3   chr1  224733363      226852492  NM_001130440       SRP9
5   chr1  224733363      226852492  NM_001145154     DNAH14
6   chr1  224733363      226852492  NM_001270410       LIN9
7   chr1  224733363      226852492  NM_001271681      PYCR2
8   chr1  224733363      226852492  NM_001282402      MIXL1
10  chr1  224733363      226852492  NM_001322302      CNIH3
13  chr1  224733363      226852492     NM_001618      PARP1
14  chr1  224733363      226852492     NM_002107      H3F3A
15  chr1  224733363      226852492     NM_002221      ITPKB
16  chr1  224733363      226852492     NM_002296        LBR
17  chr1  224733363      226852492     NM_003240     LEFTY2
18  chr1  224733363      226852492     NM_014698    TMEM63A
19  chr1  224733363      226852492     NM_020997     LEFTY1
20  chr1  224733363      226852492     NM_022735      ACBD3
23  chr1  224733363      226852492     NM_152608       SDE2
26  chr1  224733363      226852492     NR_002315    H3F3AP4
27  chr1  224733363      226852492     NR_103784  ITPKB-IT1
28  chr1  224733363      226852492     NR_106799    MIR6741
30  chr9   28537488       28647457  NM_001258282     LINGO2
32  chr9  116355215      116702985  NM_001276260       RGS3
37  chr9  116355215      116702985  NM_001318041     ZNF618,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   85453564       85607880  NM_001079910     LRRIQ1
1   chr15   28564433       28773518     NM_004667      HERC2
2   chr15   28564433       28773518     NR_033351    GOLGA8F
4   chr15   28564433       28773518     NR_033353    GOLGA8G
6   chr15   28564433       28773518     NR_039734  MIR4509-3
8   chr18   19205176       19315150  NM_001291916     SNRPD1
9   chr18   19205176       19315150  NM_001308256      ABHD3
11  chr18   19205176       19315150     NR_031565   MIR320C1
12   chr4   71365050       71542767  NM_001286731       AMTN
13   chr4   71365050       71542767     NM_016519       AMBN
14   chr4   71365050       71542767     NM_031889       ENAM
15   chr4   71365050       71542767     NM_144646     JCHAIN,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14619742       14917402     NM_080676      MACROD2
1  chr20   14619742       14917402     NR_037841  MACROD2-AS1
3   chr7   75874572       75986251  NM_001110199        SRRM3
4   chr7   75874572       75986251     NM_001540        HSPB1
5   chr7   75874572       75986251     NM_012479        YWHAG,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  186223445      186395128  NM_001164245        C1orf27
1    chr1  186223445      186395128  NM_001303232           PRG4
2    chr1  186223445      186395128     NM_003292            TPR
3    chr1  186223445      186395128     NM_022375           OCLM
4   chr16   15207123       15366426  NM_001285449         PDXDC1
6   chr16   15207123       15366426     NR_037466      MIR3180-4
7   chr16   15207123       15366426     NR_106775      MIR6511B1
8   chr16   15207123       15366426     NR_106965      MIR6511B2
9   chr16   15207123       15366426     NR_123721  PKD1P6-NPIPP1
11  chr20   40543659       41022242     NM_133170          PTPRT
12   chr9   44271486       44397857     NR_121564   LOC101927827
13   chr9  108525780      108870416     NM_018112        TMEM38B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   59142513       59325666  NM_001085487         MYSM1
1    chr1   59142513       59325666     NM_002228           JUN
2    chr1   59142513       59325666     NR_034014     LINC01135
3   chr13   46185361       46351543  NM_001286341         SPERT
5   chr13   46185361       46351543     NM_182542       ERICH6B
6   chr13   46185361       46351543     NR_125786     LINC01055
7   chr16    6376842        6621260  NM_001308117        RBFOX1
9   chr19   33151966       33313389  NM_001105570        NUDT19
10  chr19   33151966       33313389  NM_001110822        TDRD12
11  chr19   33151966       33313389     NM_032139       ANKRD27
12  chr19   33151966       33313389     NM_207391        RGS9BP
13   chr4  190385116      191977746  NM_001286820          FRG2
14   chr4  190385116      191977746     NM_004477          FRG1
15   chr4  190385116      191977746     NR_121644          DBET
16   chr4  190385116      191977746     NR_121679     LINC01262
17   chr4  190385116      191977746     NR_132380     LINC01596
18   chr4  190385116      191977746     NR_135513  LOC105379514
19   chr9   41443572       41552655  NM_001113541     SPATA31A5
20   chr9   41443572       41552655     NM_015667     SPATA31A7
21   chr9   41443572       41552655     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11    4318155        4487240  NM_001005161    OR52B4
1  chr11    4318155        4487240  NM_001005172    OR52K2
2  chr11    4318155        4487240     NM_003141    TRIM21
3  chr15   28147834       28454105     NM_000275      OCA2
5  chr15   28147834       28454105     NM_004667     HERC2
6   chr7   82888121       83051630  NM_001178129    SEMA3E
8   chr7  133270661      133400101     NM_021807     EXOC4,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr10   68084366       68496964  NM_001127384      CTNNA3
2   chr4   98384567       98593652     NM_174952       STPG2
3   chr4   98384567       98593652     NR_102713   STPG2-AS1
4   chr7   89255757       89571080     NR_110029  STEAP2-AS1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   39722621       39888803     NR_037875     LOC728730
1  chr2  181884499      182318783  NM_001278554        UBE2E3
4  chr2  181884499      182318783     NR_039637       MIR4437
5  chr2  181884499      182318783     NR_130784  LOC101927156
6  chr9   22225694       23461751     NM_022160        DMRTA1
7  chr9   22225694       23461751     NR_038977     LINC01239
8  chr9   38989409       39328845     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   20698999       20808723  NM_001145004  GOLGA6L6
1   chr15   20698999       20808723     NR_027411  GOLGA8CP
2   chr15   20698999       20808723     NR_036432   HERC2P3
3   chr15   43726519       43860352  NM_001141979   TP53BP1
4   chr15   43726519       43860352  NM_001190214   PPIP5K1
5   chr15   43726519       43860352     NM_002373     MAP1A
8   chr16    8571753        8874045     NM_000663      ABAT
10  chr16    8571753        8874045  NM_001146336   TMEM114
14  chr16    8571753        8874045     NM_024109   METTL22
16   chr5     147180         268604  NM_001080478   LRRC14B
17   chr5     147180         268604     NM_004168      SDHA
18   chr5     147180         268604     NM_052909  PLEKHG4B
19   chr5     147180         268604     NM_145265   CCDC127, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   50812490       53049826  NM_001330079         NRXN1
3   chr2   50812490       53049826     NR_039630       MIR4431
4   chr2   50812490       53049826     NR_130470       MIR8485
5   chr2   50812490       53049826     NR_135237     LOC730100
6   chr2   50812490       53049826     NR_135239  LOC105374596
7  chr20   14651572       14763692     NM_080676       MACROD2
8   chr7  110692852      110798545  NM_001099658         LRRN3
9   chr7  110692852      110798545  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr2   50754821       50996948  NM_001330082      NRXN1
1   chr2   50754821       50996948     NR_130470    MIR8485
2  chr21   23487035       23634256     NR_038400  LINC00308
3   chr4   98853611       98971691     NM_174952      STPG2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   48057251       48353756     NM_000088        COL1A1
1   chr17   48057251       48353756  NM_001168215        TMEM92
2   chr17   48057251       48353756  NM_001199898          PDK2
5   chr17   48057251       48353756  NM_001257359        SAMD14
6   chr17   48057251       48353756     NM_002204         ITGA3
8   chr17   48057251       48353756     NM_005220          DLX3
9   chr17   48057251       48353756     NM_032595       PPP1R9B
11  chr17   48057251       48353756     NR_024193         HILS1
12  chr17   48057251       48353756     NR_038230     LOC284080
13  chr17   48057251       48353756     NR_110806  LOC101927230
14  chr17   48057251       48353756     NR_135553          SGCA
15   chr4  169247685      169373230  NM_001012967        DDX60L
17   chr5  106847166      106962175     NM_001962         EFNA5, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr20    5211117        5438338     NM_144773     PROKR2
1  chr20    5211117        5438338     NR_038240  LINC00658
2   chr4  128423364      128657755  NM_001318467   SLC25A31
3   chr4  128423364      128657755     NM_015693       INTU
4   chr7   75733843       75862522  NM_001110199      SRRM3
5   chr7   75733843       75862522     NR_135079    GTF2IP7,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   50786168       51452368  NM_001330079         NRXN1
3   chr2   50786168       51452368     NR_130470       MIR8485
4   chr2   50786168       51452368     NR_135237     LOC730100
5   chr2   84686952       84919973     NM_001370         DNAH6
6   chr2  129514420      129682757     NR_110278  LOC101927881
7   chr5  106093926      106575173     NR_104671  LOC102467213
8   chr6  154007784      154365943  NM_001008503         OPRM1
17  chr7  110690145      110820466  NM_001099658         LRRN3
18  chr7  110690145      110820466  NM_001244606        IMMP2L
20  chr9   43076765       43227120  NM_001012419     ANKRD20A3
21  chr9   43076765       43227120  NM_001012421     ANKRD20A2
22  chr9   43076765       43227120     NR_027472     LOC642929,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   79096780       79204154  NM_001098816      TENM4
1  chr11   79096780       79204154     NR_030598     MIR708
2  chr11   79096780       79204154     NR_049841    MIR5579
3  chr14   38174665       38428905  NM_001310135       TTC6
4  chr14   38174665       38428905     NR_135286  LINC00517
5   chr4   80203168       80537627     NM_032693      NAA11
6   chr4   80203168       80537627     NM_033214        GK2
7   chr4   80203168       80537627     NR_038342  LINC01088
8   chr4   80203168       80537627     NR_038826  LINC00989,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr21   23442043       23543119     NR_038400     LINC00308
1  chr21   23442043       23543119     NR_109959  LOC101927843
2   chr7  110655029      110798062  NM_001099658         LRRN3
3   chr7  110655029      110798062  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr13   63175720       64665798  NR_002171      OR7E156P
1  chr13   63175720       64665798  NR_047011     LINC00395
2  chr13   63175720       64665798  NR_047029     LINC00448
5  chr13   63175720       64665798  NR_126409     LINC00376
6  chr13   63175720       64665798  NR_130763  LOC102723968,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr22   19918099       20043712     NM_000754      COMT
3   chr22   19918099       20043712  NM_001282512    TXNRD2
4   chr22   19918099       20043712  NM_001283116    TANGO2
7   chr22   19918099       20043712     NM_001670     ARVCF
10  chr22   19918099       20043712     NR_029706    MIR185
11  chr22   19918099       20043712     NR_039918   MIR4761
12   chr7  152329005      152673612     NM_005431     XRCC2
13   chr7  152329005      152673612     NM_020445    ACTR3B
14   chr9   17206818       17403085  NM_001114395     CNTLN,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   12759055       13106918  NM_001009611   PRAMEF4
1   chr1   12759055       13106918  NM_001010889   PRAMEF6
2   chr1   12759055       13106918  NM_001010890   PRAMEF9
3   chr1   12759055       13106918  NM_001012276   PRAMEF8
4   chr1   12759055       13106918  NM_001013631  HNRNPCL1
5   chr1   12759055       13106918  NM_001080830  PRAMEF12
6   chr1   12759055       13106918  NM_001099850  PRAMEF18
7   chr1   12759055       13106918  NM_001100631  PRAMEF22
8   chr1   12759055       13106918  NM_001103170   AADACL3
9   chr1   12759055       13106918  NM_001146181  HNRNPCL3
10  chr1   12759055       13106918  NM_001146344  PRAMEF11
11  chr1   12759055       13106918  NM_001294139   PRAMEF1
12  chr1   12759055       13106918  NM_001302551  HNRNPCL4
13  chr1   12759055       13106918  NM_001306072  PRAMEF26
14  chr1   12759055       13106918  NM_001310134  PRAMEF25
16  chr1   12759055       13106918     NM_023014   PRAMEF2
17  chr1   12759055       13106918     NM_152290  C1orf158
18  chr2  110164880      110337287  NM_001099289    SH3RF3
19  chr2  110164880      110337287  NM_001321504    SEPT10
21  chr6  144724043      144835184     NM_007124      UTRN
22  chr6  144724043      144835184     NR_132778   SNORA98
23  chr7   75049357       75166298  NM_001099415   POM121C
24  chr7   75049357       75166298  NM_001243198      HIP1
25  chr7   75049357       75166298  NM_001306141    SPDYE5
26  chr7   75049357       75166298     NR_028059    PMS2P3
27  chr9   28230407       28349636  NM_001258282    LINGO2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   42209985       42378274  NM_001346175         LRFN5
1  chr15   98272669       98813930     NM_183376        ARRDC4
2  chr15   98272669       98813930     NR_024172     LINC00923
3  chr15   98272669       98813930     NR_120325     LINC01582
4  chr21   29423525       29580796     NR_126010     LOC284825
6  chr21   29423525       29580796     NR_126012  LOC101927973
7   chr7  110598595      110822504  NM_001099658         LRRN3
8   chr7  110598595      110822504  NM_001244606        IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr9   14918521       15189517  NM_001168339        TTC39B
2  chr9   14918521       15189517     NR_003920     LOC389705
3  chr9   67057395       67353567     NR_002817        AQP7P1
4  chr9   67057395       67353567     NR_136300  LOC102724580,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   11833850       12242953     NM_015204    THSD7A
1  chr9   26293112       26884341  NM_001167575     CAAP1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   21832716       21980783  NM_001310148     NPIPB4
1  chr16   21832716       21980783     NM_003366     UQCRC2
2  chr18   35073119       35174885     NM_020180      CELF4
3   chr3     882401        1379961  NM_001289081      CNTN6
4   chr3     882401        1379961     NR_110118  LINC01266,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr19   23842393       24148002  NM_001244038    ZNF726
1   chr19   23842393       24148002     NM_138286    ZNF681
2   chr19   23842393       24148002     NM_138330    ZNF675
3   chr19   23842393       24148002     NR_003662   RPSAP58
4    chr2  110142639      110250870  NM_001099289    SH3RF3
5    chr2  193613457      193889336     NR_002769    PCGEM1
6    chr6   45075299       45445523  NM_001024630     RUNX2
7    chr6   45075299       45445523  NM_001261823    SUPT3H
9    chr6   45075299       45445523     NR_030313    MIR586
11   chr7   75813520       75924950  NM_001110199     SRRM3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2   50884386       51058397  NM_001330082         NRXN1
1    chr2   50884386       51058397     NR_130470       MIR8485
2    chr2  195512497      195612754     NR_110223  LOC101927431
3   chr20   40524541       40801047     NM_133170         PTPRT
4   chr20   41081759       41227518     NM_133170         PTPRT
5   chr22   19900284       20197015     NM_000754          COMT
8   chr22   19900284       20197015  NM_001190326         DGCR8
9   chr22   19900284       20197015  NM_001243537       CCDC188
10  chr22   19900284       20197015  NM_001278639        RANBP1
13  chr22   19900284       20197015  NM_001282512        TXNRD2
14  chr22   19900284       20197015  NM_001283116        TANGO2
17  chr22   19900284       20197015     NM_001670         ARVCF
20  chr22   19900284       20197015     NM_013373        ZDHHC8
21  chr22   19900284       20197015     NM_022727        TRMT2A
22  chr22   19900284       20197015     NR_026919     LINC00896
23  chr22   19900284       20197015     NR_029706        MIR185
24  chr22   19900284       20197015     NR_031706       MIR1306
25  chr22   19900284       20197015     NR_037412       MIR3618
26  chr22   19900284       20197015     NR_038460     LOC284865
27  chr22   19900284       20197015     NR_039918       MIR4761
28  chr22   19900284       20197015     NR_106874       MIR6816
29   chr7    3286550        3436366     NM_152744          SDK1
30   chr7  110619841      110724814  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr13   95293408       95488968     NM_007084         SOX21
1  chr13   95293408       95488968     NR_046514     SOX21-AS1
2  chr13   95293408       95488968     NR_110754  LOC101927284
3  chr13   95293408       95488968     NR_120417  LOC101927248
4  chr20   14871111       15120108     NM_080676       MACROD2
5  chr20   14871111       15120108     NR_037841   MACROD2-AS1
7   chr3  116117348      116420089  NM_001318915         LSAMP,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  245021534      246227614  NM_001143943        EFCAB2
1  chr1  245021534      246227614  NM_001167740         SMYD3
3  chr1  245021534      246227614     NM_004501        HNRNPU
4  chr1  245021534      246227614     NM_018012        KIF26B
7  chr1  245021534      246227614     NR_111907  LOC101928068,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  135282096      135403041     NM_000773     CYP2E1
1   chr10  135282096      135403041  NM_001143763      SYCE1
4   chr10  135282096      135403041     NR_033789     SPRNP1
5   chr14   41909724       42267018  NM_001346175      LRFN5
6    chr2  233014413      233182702  NM_001257281     DIS3L2
8    chr4   98407867       98529662     NM_174952      STPG2
9    chr4   98407867       98529662     NR_102713  STPG2-AS1
10   chr8   15959982       16106753     NM_002445       MSR1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr3   41292189       41547255  NM_001322500          ULK4
2  chr9   67106144       67327768     NR_002817        AQP7P1
3  chr9   67106144       67327768     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   15375883       15482276  NM_001277325    NPIPA5
1  chr17   21896585       22013178     NR_027084  FLJ36000,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   67302508       67464309     NM_000695    ALDH3B2
1   chr11   67302508       67464309     NM_000852      GSTP1
3   chr11   67302508       67464309  NM_001166102     NDUFV1
4   chr11   67302508       67464309  NM_001243750      NUDT8
5   chr11   67302508       67464309     NM_005995      TBX10
6   chr11   67302508       67464309     NM_080658       ACY3
8   chr11   67302508       67464309     NR_033791     DOC2GP
9   chr11   67302508       67464309     NR_130935   C11orf72
10  chr11  102655162      102878467     NM_002421       MMP1
11  chr11  102655162      102878467     NM_002422       MMP3
12  chr11  102655162      102878467     NM_002426      MMP12
13  chr11  102655162      102878467     NM_002427      MMP13
14  chr11  102655162      102878467     NR_038390     WTAPP1
15  chr16   29555555       29992052  NM_001030288        SPN
16  chr16   29555555       29992052  NM_001083613    TMEM219
17  chr16   29555555       29992052  NM_001114099     SEZ6L2
18  chr16   29555555       29992052  NM_001256269      KIF22
20  chr16   29555555       29992052  NM_001256443      PRRT2
21  chr16   29555555       29992052  NM_001276275        MAZ
22  chr16   29555555       29992052  NM_001286585      CDIPT
23  chr16   29555555       29992052  NM_001293204        MVP
24  chr16   29555555       29992052  NM_001318249       QPRT
27  chr16   29555555       29992052     NM_004783      TAOK2
30  chr16   29555555       29992052     NM_024516      PAGR1
31  chr16   29555555       29992052     NM_152338       ZG16
32  chr16   29555555       29992052     NM_175900   C16orf54
33  chr16   29555555       29992052     NM_178863     KCTD13
34  chr16   29555555       29992052     NM_181718     ASPHD1
35  chr16   29555555       29992052     NR_015396  CDIPT-AS1
37  chr16   29555555       29992052     NR_049833  MIR3680-2
38  chr16   29555555       29992052     NR_135305     SMG1P2
40   chr9   39011780       39151875     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   12800464       12958499  NM_001009611     PRAMEF4
1    chr1   12800464       12958499  NM_001013631    HNRNPCL1
2    chr1   12800464       12958499  NM_001080830    PRAMEF12
3    chr1   12800464       12958499  NM_001146181    HNRNPCL3
4    chr1   12800464       12958499  NM_001146344    PRAMEF11
5    chr1   12800464       12958499  NM_001294139     PRAMEF1
6    chr1   12800464       12958499  NM_001302551    HNRNPCL4
8    chr1   12800464       12958499     NM_023014     PRAMEF2
9    chr1   12800464       12958499     NM_152290    C1orf158
10  chr10   81494143       81790315     NM_003019       SFTPD
11  chr10   81494143       81790315     NR_002724       MBL1P
12  chr10   81494143       81790315     NR_029407   LOC642361
13  chr10   81494143       81790315     NR_033857     BMS1P21
14  chr10   81494143       81790315     NR_120611  NUTM2B-AS1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr19      50759         255018  NM_001005240      OR4F17
1   chr19      50759         255018     NR_026818     FAM138A
2   chr19      50759         255018     NR_028324   LINC01002
3   chr19      50759         255018     NR_033266      WASH5P
4   chr19      50759         255018     NR_036266   MIR1302-9
5    chr2   31428108       32105849     NM_000348      SRD5A2
6    chr2   31428108       32105849     NM_000379         XDH
7    chr2   31428108       32105849  NM_001145122      CAPN14
9    chr2   31428108       32105849     NM_014600        EHD3
10   chr2   31428108       32105849     NR_126032       MEMO1
12   chr8    6538116        7128155  NM_001302265      DEFA1B
13   chr8    6538116        7128155     NM_001925       DEFA4
14   chr8    6538116        7128155     NM_001926       DEFA6
15   chr8    6538116        7128155     NM_004084       DEFA1
17   chr8    6538116        7128155     NM_005217       DEFA3
18   chr8    6538116        7128155     NM_005218       DEFB1
19   chr8    6538116        7128155     NM_018361      AGPAT5
20   chr8    6538116        7128155     NM_021010       DEFA5
21   chr8    6538116        7128155     NM_207411        XKR5
22   chr8    6538116        7128155     NR_027000   LINC00965
24   chr8    6538116        7128155     NR_029386     DEFA10P
25   chr8    6538116        7128155     NR_036686      DEFT1P
27   chr8    6538116        7128155     NR_039803    MIR4659A
28   chr8    6538116        7128155     NR_039807    MIR4659B
29   chr8    6538116        7128155     NR_045217  GS1-24F4.2
30   chr8    6538116        7128155     NR_073407      DEFA8P
31   chr8    6538116        7128155     NR_073408      DEFA9P
32   chr8    6538116        7128155     NR_073421     DEFA11P
33   chr8    6538116        7128155     NR_125386   MCPH1-AS1
34   chr9   41861614       42012335     NR_003670      FGF7P3
35   chr9   41861614       42012335     NR_015363       GLIDR,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr15   41698927       41808203     NM_002220        ITPKA
1   chr15   41698927       41808203     NM_015138         RTF1
2   chr15   41698927       41808203     NM_206961          LTK
3    chr2  193432568      193713328     NR_002769       PCGEM1
4    chr4   68942197       69066082     NM_207407    TMPRSS11F
5    chr4   68942197       69066082     NR_015446       FTLP10
6    chr4   68942197       69066082     NR_104048  TMPRSS11BNL
7    chr7  110616325      111136886  NM_001099658        LRRN3
8    chr7  110616325      111136886  NM_001244606       IMMP2L
10   chr9     497628         646839  NM_001256876        KANK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12819384       13514839  NM_001009611       PRAMEF4
1    chr1   12819384       13514839  NM_001010889       PRAMEF6
3    chr1   12819384       13514839  NM_001010890       PRAMEF9
4    chr1   12819384       13514839  NM_001012276       PRAMEF8
6    chr1   12819384       13514839  NM_001013407       PRAMEF5
8    chr1   12819384       13514839  NM_001013631      HNRNPCL1
9    chr1   12819384       13514839  NM_001024661      PRAMEF14
10   chr1   12819384       13514839  NM_001039361      PRAMEF10
11   chr1   12819384       13514839  NM_001080830      PRAMEF12
12   chr1   12819384       13514839  NM_001098376      PRAMEF15
13   chr1   12819384       13514839  NM_001099790      PRAMEF19
14   chr1   12819384       13514839  NM_001099850      PRAMEF18
16   chr1   12819384       13514839  NM_001099851      PRAMEF17
17   chr1   12819384       13514839  NM_001100631      PRAMEF22
19   chr1   12819384       13514839  NM_001136561      HNRNPCL2
20   chr1   12819384       13514839  NM_001146181      HNRNPCL3
21   chr1   12819384       13514839  NM_001146344      PRAMEF11
22   chr1   12819384       13514839  NM_001291381     PRAMEF33P
23   chr1   12819384       13514839  NM_001294139       PRAMEF1
24   chr1   12819384       13514839  NM_001300891      PRAMEF27
26   chr1   12819384       13514839  NM_001302551      HNRNPCL4
27   chr1   12819384       13514839  NM_001306072      PRAMEF26
28   chr1   12819384       13514839  NM_001310134      PRAMEF25
30   chr1   12819384       13514839     NM_023014       PRAMEF2
31   chr1   12819384       13514839     NM_152290      C1orf158
32   chr1   12819384       13514839     NR_111945     PRAMEF36P
34  chr12  130241039      130626263     NM_133448      TMEM132D
35  chr12  130241039      130626263     NR_024457  LOC100190940
36  chr20   14684957       15070430     NM_080676       MACROD2
37  chr20   14684957       15070430     NR_037841   MACROD2-AS1
39   chr9   80130540       80243076     NM_004297         GNA14
40   chr9   80130540       80243076     NR_121184     GNA14-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21489007       21680131  NM_001077180        METTL9
2   chr16   21489007       21680131     NM_005849         IGSF6
3   chr16   21489007       21680131     NR_002594      SLC7A5P2
4   chr16   21489007       21680131     NR_027155        SMG1P3
5   chr16   21489007       21680131     NR_049833     MIR3680-2
6   chr16   21489007       21680131     NR_110930  LOC101927814
7   chr16   83043986       83448268  NM_001220488         CDH13
9   chr22   20118890       20276925  NM_001243537       CCDC188
10  chr22   20118890       20276925     NM_013373        ZDHHC8
11  chr22   20118890       20276925     NM_023004         RTN4R
12  chr22   20118890       20276925     NR_026919     LINC00896
13  chr22   20118890       20276925     NR_031618       MIR1286
14  chr22   20118890       20276925     NR_038460     LOC284865
15   chr7  110505309      111170230  NM_001099658         LRRN3
16   chr7  110505309      111170230  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  244966160      245078572  NM_001312871      COX20
2   chr1  244966160      245078572     NM_004501     HNRNPU
4   chr1  244966160      245078572     NR_132782   SNORA100
5  chr15   28664307       28800936     NR_033351    GOLGA8F
6  chr15   28664307       28800936     NR_033353    GOLGA8G
7  chr15   28664307       28800936     NR_039734  MIR4509-3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   79120405       79223841  NM_001098816         TENM4
1  chr11   79120405       79223841     NR_049841       MIR5579
2   chr4  161702742      162421899  NM_001128428         FSTL5
3   chr5  117380095      117894636     NR_104609       HNCAT21
4   chr5  117380095      117894636     NR_104610        HRAT56
5   chr5  117380095      117894636     NR_104997  LOC102467224,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27190525       27684340  NM_001080406      C12orf71
1   chr12   27190525       27684340  NM_001145010         SMCO2
2   chr12   27190525       27684340  NM_001248002        ARNTL2
3   chr12   27190525       27684340     NM_015000        STK38L
4   chr12   27190525       27684340     NM_177444       PPFIBP1
5   chr12   27190525       27684340     NR_109975    ARNTL2-AS1
6   chr18   67105085       67226924     NM_152721          DOK6
7   chr18   67105085       67226924     NR_134579  LOC105372179
8    chr7  110717672      111436829  NM_001099658         LRRN3
9    chr7  110717672      111436829  NM_001244606        IMMP2L
10   chr7  110717672      111436829     NM_014705         DOCK4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12852762       13135165  NM_001009611       PRAMEF4
1    chr1   12852762       13135165  NM_001010889       PRAMEF6
2    chr1   12852762       13135165  NM_001010890       PRAMEF9
3    chr1   12852762       13135165  NM_001012276       PRAMEF8
4    chr1   12852762       13135165  NM_001013407       PRAMEF5
5    chr1   12852762       13135165  NM_001013631      HNRNPCL1
6    chr1   12852762       13135165  NM_001099850      PRAMEF18
7    chr1   12852762       13135165  NM_001100631      PRAMEF22
8    chr1   12852762       13135165  NM_001146181      HNRNPCL3
9    chr1   12852762       13135165  NM_001146344      PRAMEF11
10   chr1   12852762       13135165  NM_001294139       PRAMEF1
11   chr1   12852762       13135165  NM_001302551      HNRNPCL4
12   chr1   12852762       13135165  NM_001306072      PRAMEF26
13   chr1   12852762       13135165  NM_001310134      PRAMEF25
15   chr1   12852762       13135165     NM_023014       PRAMEF2
16   chr1   91866502       91980082  NM_001017975          HFM1
17   chr1   91866502       91980082  NM_001134419          CDC7
19  chr15  100167626      100374982  NM_001130928         MEF2A
20  chr15  100167626      100374982  NM_001284417        LYSMD4
23  chr15  100167626      100374982     NR_003260       DNM1P46
24  chr15  100167626      100374982     NR_135737     LOC400464
25  chr18   61822364       62010544     NR_033881     LOC284294
26  chr18   61822364       62010544     NR_033983     LINC01538
27   chr2     856493         972072     NM_018968         SNTG2
28   chr2     856493         972072     NR_033880     LINC01115
29   chr2     856493         972072     NR_110179  LOC101060385
30   chr2     856493         972072     NR_136151  LOC101060391
31  chr22   19912498       20090832     NM_000754          COMT
34  chr22   19912498       20090832  NM_001190326         DGCR8
35  chr22   19912498       20090832  NM_001282512        TXNRD2
36  chr22   19912498       20090832  NM_001283116        TANGO2
39  chr22   19912498       20090832     NM_001670         ARVCF
42  chr22   19912498       20090832     NR_029706        MIR185
43  chr22   19912498       20090832     NR_031706       MIR1306
44  chr22   19912498       20090832     NR_037412       MIR3618
45  chr22   19912498       20090832     NR_039918       MIR4761
46   chr4  190403277      190604375     NR_121679     LINC01262
47   chr4  190403277      190604375     NR_135513  LOC105379514
48   chr5  106830723      106966760     NM_001962         EFNA5,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr12   72612582       72760829     NM_013381      TRHDE
1  chr12   72612582       72760829     NR_026836  TRHDE-AS1
3  chr14   47880895       47991096  NM_001113498      MDGA2
4  chr16   68616554       68922448  NM_001317184       CDH1
5  chr16   68616554       68922448  NM_001317195       CDH3
6  chr16   68616554       68922448     NM_024562     TANGO6
7  chr16   68616554       68922448     NR_106988  MIR7641-2
8   chr2   52033054       52219269     NR_135237  LOC730100
9  chr20   40588892       40801537     NM_133170      PTPRT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   77642450       77768477  NM_001304505        HMG20A
1   chr15   77642450       77768477     NM_024776         PEAK1
2   chr16   76234949       76405738  NM_001322181       CNTNAP4
4    chr2   50831930       50989248  NM_001330082         NRXN1
5    chr2   50831930       50989248     NR_130470       MIR8485
6    chr2   97140032       98661461     NM_001079         ZAP70
7    chr2   97140032       98661461  NM_001115016        KANSL3
8    chr2   97140032       98661461  NM_001122646       FAM178B
9    chr2   97140032       98661461  NM_001164315       ANKRD36
11   chr2   97140032       98661461  NM_001285485        NEURL3
12   chr2   97140032       98661461  NM_001293083        FER1L5
13   chr2   97140032       98661461  NM_001319085        ARID5A
15   chr2   97140032       98661461  NM_001320849        FAHD2B
16   chr2   97140032       98661461  NM_001322354        LMAN2L
17   chr2   97140032       98661461     NM_001862         COX5B
18   chr2   97140032       98661461     NM_005735        ACTR1B
19   chr2   97140032       98661461     NM_015348       TMEM131
20   chr2   97140032       98661461     NM_016466       ANKRD39
22   chr2   97140032       98661461     NM_017623         CNNM3
23   chr2   97140032       98661461     NM_017789        SEMA4C
24   chr2   97140032       98661461     NM_020184         CNNM4
25   chr2   97140032       98661461     NM_025190      ANKRD36B
27   chr2   97140032       98661461     NM_144994       ANKRD23
30   chr2   97140032       98661461     NR_036074       MIR3127
31   chr2   97140032       98661461     NR_038386     LINC01125
33   chr2   97140032       98661461     NR_103732  LOC100506076
38   chr2   97140032       98661461     NR_110209  LOC101927053
39   chr2   97140032       98661461     NR_130704  LOC100506123
41   chr2   97140032       98661461     NR_135564  LOC105373496
42   chr3   60298447       60702665  NM_001320899          FHIT
43   chr3   60298447       60702665     NR_128708      MIR548BB
44   chr3  105323285      105462241  NM_001321786          CBLB
50   chr9   39098948       39199267     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  224659362      225280881  NM_001145154     DNAH14
1   chr1  224659362      225280881  NM_001322302      CNIH3
7   chr4  165969648      166076405  NM_001100389    TMEM192
8   chr7  110535495      110700899  NM_001244606     IMMP2L
10  chr8  111810339      113108861     NR_125416  LINC01608
12  chr8  111810339      113108861     NR_125418  LINC01609,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   19720087       20007064  NM_001271850         TPTE2
1   chr13   19720087       20007064     NM_006001        TUBA3C
3   chr13   19720087       20007064     NR_027248     ANKRD26P3
4   chr13   19720087       20007064     NR_034026     LINC00421
7   chr13   19720087       20007064     NR_126054  LOC101928697
8   chr20   14840862       15118585     NM_080676       MACROD2
9   chr20   14840862       15118585     NR_037841   MACROD2-AS1
11   chr6  131032714      131171875  NM_001135554       EPB41L2
12   chr6  131032714      131171875  NM_001195597         SMLR1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   81625708       81755677  NM_001256430         STON2
1   chr14   81625708       81755677  NM_001278940        GTF2A1
4   chr14   81625708       81755677     NR_003021       SNORA79
5   chr14   81625708       81755677     NR_135252  LOC101928504
6    chr7   75898518       76056589  NM_001110199         SRRM3
7    chr7   75898518       76056589  NM_001110354           ZP3
8    chr7   75898518       76056589     NM_001540         HSPB1
10   chr7   75898518       76056589     NM_012479         YWHAG
11   chr7   75898518       76056589     NM_080744         SSC4D
12   chr8    3632148        3759136     NM_033225         CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16    8654968        8994452     NM_000303          PMM2
1   chr16    8654968        8994452     NM_000663          ABAT
2   chr16    8654968        8994452  NM_001042476       CARHSP1
8   chr16    8654968        8994452  NM_001286457          USP7
12  chr16    8654968        8994452     NM_015421       TMEM186
14  chr16    8654968        8994452     NM_024109       METTL22
16   chr2   52037658       52272796     NR_135237     LOC730100
17  chr21   17815953       18060371     NR_027790      MIR99AHG
19  chr21   17815953       18060371     NR_029480      MIRLET7C
20  chr21   17815953       18060371     NR_029514        MIR99A
21  chr21   17815953       18060371     NR_029694      MIR125B2
30   chr4  118835515      119289488     NM_003619        PRSS12
31   chr4  118835515      119289488     NM_004784         NDST3
32   chr4  118835515      119289488     NR_002963       SNORA24
33   chr4  118835515      119289488     NR_003584         SNHG8
34   chr5    6096750        7685355  NM_001145161       UBE2QL1
35   chr5    6096750        7685355  NM_001171805         PAPD7
37   chr5    6096750        7685355  NM_001324322        SRD5A1
38   chr5    6096750        7685355     NM_020546         ADCY2
39   chr5    6096750        7685355     NM_032286         MED10
40   chr5    6096750        7685355     NR_024423     LINC01018
42   chr5    6096750        7685355     NR_028351      FLJ33360
43   chr5    6096750        7685355     NR_033906     LOC442132
44   chr5    6096750        7685355     NR_036242       MIR4278
45   chr5    6096750        7685355     NR_037947         NSUN2
46   chr5    6096750        7685355     NR_039659       MIR4454
47   chr5    6096750        7685355     NR_103771  LOC100505625
48   chr5    6096750        7685355     NR_134277  LOC101929261
49   chr7  110699208      110874632  NM_001099658         LRRN3
50   chr7  110699208      110874632  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  135276260      135483415     NM_000773        CYP2E1
1   chr10  135276260      135483415  NM_001080998         FRG2B
2   chr10  135276260      135483415  NM_001143763         SYCE1
5   chr10  135276260      135483415     NR_002934        SCART1
6   chr10  135276260      135483415     NR_033789        SPRNP1
7   chr21   28121248       28313052     NM_006988       ADAMTS1
8   chr21   28121248       28313052     NM_007038       ADAMTS5
9    chr4  189375454      190750761     NR_033869     LINC01060
10   chr4  189375454      190750761     NR_121679     LINC01262
11   chr4  189375454      190750761     NR_135513  LOC105379514
12   chr6   38070707       38266762  NM_001172418         BTBD9
13   chr6   38070707       38266762     NM_021943        ZFAND3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   83984858       84136232  NM_001142699          DLG2
3   chr7   64058229       64188537  NM_001282360        ZNF107
4   chr7   64058229       64188537     NR_077227  LOC100128885
6   chr7   64058229       64188537     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   68623825       68824303  NM_001317184       CDH1
1  chr16   68623825       68824303  NM_001317195       CDH3
2  chr16   68623825       68824303     NR_106988  MIR7641-2
3   chr4   72994515       73122105     NM_004885     NPFFR2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   68035977       68180684  NM_001127384      CTNNA3
2   chr10   81461591       81668515  NM_001278495      NUTM2B
3   chr10   81461591       81668515     NR_029407   LOC642361
4   chr10   81461591       81668515     NR_033857     BMS1P21
5   chr10   81461591       81668515     NR_120611  NUTM2B-AS1
8   chr17   47820373       47957346  NM_001077503        TAC4
9   chr17   47820373       47957346  NM_001199158        KAT7
10  chr17   47820373       47957346  NM_001242791    FLJ45513
11  chr17   47820373       47957346     NM_030802     FAM117A
12  chr18   63157003       63580012  NM_001317214        CDH7, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   26613875       26795631  NM_001105519       C2orf70
1  chr2   26613875       26795631     NM_004802          OTOF
2  chr2   26613875       26795631     NM_033505       SELENOI
3  chr2   26613875       26795631     NM_145038          DRC1
5  chr2   78207945       78795697     NR_110287  LOC101927948
6  chr2   78207945       78795697     NR_110288  LOC101927967
7  chr2   78207945       78795697     NR_136312  LOC105374820,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1  108362543      108493556     NM_006113       VAV3
1  chr1  108362543      108493556     NR_107006    MIR7852
2  chr2  212975191      213109917  NM_001042599      ERBB4
3  chr4   69105381       69223829  NM_001031732     YTHDC1
4  chr4   69105381       69223829     NM_182502  TMPRSS11B
5  chr7  110696796      111395506  NM_001099658      LRRN3
6  chr7  110696796      111395506  NM_001244606     IMMP2L
7  chr7  110696796      111395506     NM_014705      DOCK4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245034109      245181391  NM_001143943        EFCAB2
3    chr1  245034109      245181391     NR_111907  LOC101928068
4   chr22   19918752       21022243     NM_000754          COMT
7   chr22   19918752       21022243  NM_001190326         DGCR8
8   chr22   19918752       21022243  NM_001242313      TMEM191B
9   chr22   19918752       21022243  NM_001243537       CCDC188
10  chr22   19918752       21022243  NM_001256523         ZNF74
11  chr22   19918752       21022243  NM_001278639        RANBP1
14  chr22   19918752       21022243  NM_001282512        TXNRD2
15  chr22   19918752       21022243  NM_001283116        TANGO2
16  chr22   19918752       21022243  NM_001293236         MED15
20  chr22   19918752       21022243     NM_001670         ARVCF
23  chr22   19918752       21022243     NM_013373        ZDHHC8
24  chr22   19918752       21022243     NM_015672        RIMBP3
25  chr22   19918752       21022243     NM_022727        TRMT2A
26  chr22   19918752       21022243     NM_023004         RTN4R
27  chr22   19918752       21022243     NM_033257        DGCR6L
28  chr22   19918752       21022243     NM_153334        SCARF2
29  chr22   19918752       21022243     NR_003563       PI4KAP1
30  chr22   19918752       21022243     NR_026919     LINC00896
31  chr22   19918752       21022243     NR_029706        MIR185
32  chr22   19918752       21022243     NR_031618       MIR1286
33  chr22   19918752       21022243     NR_031706       MIR1306
34  chr22   19918752       21022243     NR_033825        KLHL22
35  chr22   19918752       21022243     NR_037412       MIR3618
36  chr22   19918752       21022243     NR_038460     LOC284865
37  chr22   19918752       21022243     NR_039918       MIR4761
38  chr22   19918752       21022243     NR_106874       MIR6816
39  chr22   19918752       21022243     NR_136560       FAM230A
40  chr22   19918752       21022243     NR_136569     LOC729461
41  chr22   19918752       21022243     NR_136572  LOC101927859
42   chr9     339027         492338  NM_001190458         DOCK8
43   chr9     339027         492338  NM_001256876         KANK1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  100027362      100239199  NM_001013660        FRRS1
1    chr1  100027362      100239199     NM_017734        PALMD
2    chr1  100027362      100239199     NR_037516    MIR548AA1
3   chr11   40348991       40724221  NM_001258419       LRRC4C
4   chr20   14800535       14949136     NM_080676      MACROD2
5   chr20   14800535       14949136     NR_037841  MACROD2-AS1
7    chr5   26894805       27420534     NM_016279         CDH9
8    chr7   75893141       76121674  NM_001102594         DTX2
10   chr7   75893141       76121674  NM_001110199        SRRM3
11   chr7   75893141       76121674  NM_001110354          ZP3
12   chr7   75893141       76121674     NM_001540        HSPB1
14   chr7   75893141       76121674     NM_012479        YWHAG
15   chr7   75893141       76121674     NM_080744        SSC4D
16   chr7   75893141       76121674     NR_003262       FDPSP2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   81015547       81133796  NM_001145026     PTPRQ
1  chr12   81015547       81133796     NM_002469      MYF6
2  chr12   81015547       81133796     NM_005593      MYF5
3  chr16   68582033       68712959  NM_001305204     ZFP90
5  chr16   68582033       68712959  NM_001317195      CDH3
6   chr5   59801067       59935692  NM_001145208   DEPDC1B
7   chr5   59801067       59935692     NR_024617     PART1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   60337812       60682266  NM_001310141        MS4A18
1   chr11   60337812       60682266     NM_004778        PTGDR2
2   chr11   60337812       60682266     NM_014502        PRPF19
3   chr11   60337812       60682266     NM_024092       TMEM109
4   chr11   60337812       60682266     NM_024098        CCDC86
5   chr11   60337812       60682266     NM_031457         MS4A8
6   chr11   60337812       60682266     NM_152717        MS4A15
7   chr11   60337812       60682266     NM_206893        MS4A10
8   chr11   60337812       60682266     NM_207341           ZP1
9   chr11   60337812       60682266     NR_026946     LINC00301
10  chr13   54746842       55154719     NR_031628       MIR1297
11  chr16   68594704       68786607  NM_001305204         ZFP90
13  chr16   68594704       68786607  NM_001317184          CDH1
14  chr16   68594704       68786607  NM_001317195          CDH3
15  chr16   68594704       68786607     NR_106988     MIR7641-2
16   chr7   64029618       64208061  NM_001282360        ZNF107
17   chr7   64029618       64208061     NR_033245     LOC641746
18   chr7   64029618       64208061     NR_077227  LOC100128885
20   chr7   64029618       64208061     NR_106898       MIR6839
21   chr8   19787973       20048302     NM_000237           LPL
22   chr8   19787973       20048302  NM_001135691       SLC18A1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  210262907      210466919  NM_001039538          MAP2
2   chr4  169229229      169863383  NM_001012967        DDX60L
3   chr4  169229229      169863383  NM_001166108         PALLD
7   chr4  169229229      169863383     NM_017631         DDX60
8   chr7  110647934      110858544  NM_001099658         LRRN3
9   chr7  110647934      110858544  NM_001244606        IMMP2L
11  chr7  110758174      111267220  NM_001099658         LRRN3
12  chr7  110758174      111267220  NM_001244606        IMMP2L
14  chr7  146524035      146782219     NM_014141       CNTNAP2
15  chr7  146524035      146782219     NR_110829  LOC101928700,   chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr6  162390803      162703490     NM_013988       PARK2
1  chr7  121659414      121901464  NM_001206838      PTPRZ1
2  chr7  121659414      121901464     NM_005763        AASS
3  chr8    7842358        7983471     NR_003668  DEFB109P1B
4  chr8    7842358        7983471     NR_027424      FAM66E
5  chr8    7842358        7983471     NR_031689    MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   89147689       89781843  NM_001105522   TRIM49D2
2   chr11   89147689       89781843  NM_001136486     TRIM64
3   chr11   89147689       89781843  NM_001143837       NOX4
4   chr11   89147689       89781843  NM_001164397    TRIM64B
5   chr11   89147689       89781843  NM_001195234    TRIM49C
6   chr11   89147689       89781843  NM_001206627   TRIM49D1
8   chr11   89147689       89781843  NM_001271942     TRIM77
13  chr11   89147689       89781843     NM_020358     TRIM49
14  chr11   89147689       89781843     NM_153696     FOLH1B
15  chr11   89147689       89781843     NR_028346   TRIM53AP
18  chr12   97969065       98150180     NR_077240  LOC643711
20  chr15   28610348       28724083     NR_033351    GOLGA8F
21  chr15   28610348       28724083     NR_033353    GOLGA8G
22  chr15   28610348       28724083     NR_039734  MIR4509-3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67971451       68078665  NM_001127384        CTNNA3
2   chr11  131359577      131472188  NM_001048209           NTM
3   chr11  131359577      131472188     NR_110140  LOC101929653
4    chr7  142994340      143128965     NM_000083         CLCN1
5    chr7  142994340      143128965     NM_001224         CASP2
6    chr7  142994340      143128965  NM_001278297       FAM131B
7    chr7  142994340      143128965  NM_001322263  LOC100507507
8    chr7  142994340      143128965     NM_003461           ZYX
9    chr7  142994340      143128965     NM_005232         EPHA1
12   chr7  142994340      143128965     NR_033897     EPHA1-AS1
13   chr7  142994340      143128965     NR_106952       MIR6892
14   chr9   30284286       30440880     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   86139935       86859092  NM_001184765     ODF2L
1    chr1   86139935       86859092     NM_017953    ZNHIT6
3    chr1   86139935       86859092     NM_152890   COL24A1
4    chr1   86139935       86859092     NR_107010   MIR7856
5   chr10   67892453       67996904  NM_001127384    CTNNA3
7   chr19   23626985       24919638  NM_001244038    ZNF726
8   chr19   23626985       24919638  NM_001278661    ZNF254
11  chr19   23626985       24919638     NM_138286    ZNF681
12  chr19   23626985       24919638     NM_138330    ZNF675
13  chr19   23626985       24919638     NR_003603  HAVCR1P1
14  chr19   23626985       24919638     NR_003662   RPSAP58
15   chr3  148071527      148928162     NM_000096        CP
16   chr3  148071527      148928162  NM_001184721      GYG1
17   chr3  148071527      148928162  NM_001308258      HPS3
18   chr3  148071527      148928162  NM_001318934      HLTF
20   chr3  148071527      148928162     NM_001870      CPA3
21   chr3  148071527      148928162     NM_001871      CPB1
22   chr3  148071527      148928162     NM_009585     AGTR1
26   chr3  148071527      148928162     NR_046648  HLTF-AS1
27   chr7    8673766        8829775     NM_152745     NXPH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143706163      143836886  NM_001123068       PPIAL4G
1    chr1  143706163      143836886     NR_104014     LINC01138
2    chr1  143706163      143836886     NR_111930  LOC100132057
3   chr15   20979451       21297716  NM_001277303        POTEB2
4   chr15   20979451       21297716     NM_207355        POTEB3
5   chr15   20979451       21297716     NR_028506         NF1P2
6   chr15   20979451       21297716     NR_036062     MIR3118-2
7   chr15   20979451       21297716     NR_040094     LINC01193
8   chr15   20979451       21297716     NR_049895     MIR5701-2
10  chr20   55511270       55750733     NM_001719          BMP7
11  chr21   23138994       24007851     NR_038400     LINC00308
12  chr21   23138994       24007851     NR_109958     LINC01425
13  chr21   23138994       24007851     NR_109959  LOC101927843
14   chr4  121661775      121792701     NM_018699         PRDM5
15   chr5   17710907       17867435     NR_134286     LOC646241
17   chr9   44288257       44400541     NR_121564  LOC101927827,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   97278835       97618725  NM_001115016        KANSL3
1   chr2   97278835       97618725  NM_001122646       FAM178B
3   chr2   97278835       97618725  NM_001293083        FER1L5
4   chr2   97278835       97618725  NM_001322354        LMAN2L
5   chr2   97278835       97618725     NM_016466       ANKRD39
7   chr2   97278835       97618725     NM_017623         CNNM3
8   chr2   97278835       97618725     NM_017789        SEMA4C
9   chr2   97278835       97618725     NM_020184         CNNM4
11  chr2   97278835       97618725     NM_144994       ANKRD23
12  chr2   97278835       97618725     NR_036074       MIR3127
14  chr2   97278835       97618725     NR_110209  LOC101927053
15  chr5  106850570      107411872  NM_001163315        FBXL17
16  chr5  106850570      107411872     NM_001962         EFNA5
17  chr7  102196735      102331353  NM_001031618        SPDYE2
19  chr7  102196735      102331353  NM_001097615       POLR2J3
20  chr7  102196735      102331353  NM_001114403        UPK3BL
21  chr7  102196735      102331353  NM_001277335        RASA4B
22  chr7  102196735      102331353     NM_006989         RASA4
23  chr7  102196735      102331353     NM_032959       POLR2J2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  145041791      145376767  NM_001277444         NBPF9
1  chr1  145041791      145376767  NM_001278267        NBPF20
2  chr1  145041791      145376767  NM_001302371        NBPF10
3  chr1  145041791      145376767     NM_004892        SEC22B
4  chr1  145041791      145376767     NM_022359       PDE4DIP
5  chr1  145041791      145376767     NM_203458      NOTCH2NL
6  chr1  145041791      145376767     NR_104217       NBPF25P
7  chr1  145041791      145376767     NR_125967  LOC101928979,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   55709329       55824737  NM_001142770     PCDH15
3   chr11   48449193       48586580  NM_001005512     OR4A47
4   chr15   28570819       28703647     NR_033351    GOLGA8F
5   chr15   28570819       28703647     NR_033353    GOLGA8G
6   chr15   28570819       28703647     NR_039734  MIR4509-3
7   chr16   15423588       15902787  NM_001040113      MYH11
8   chr16   15423588       15902787  NM_001128423     MPV17L
9   chr16   15423588       15902787  NM_001142469   C16orf45
10  chr16   15423588       15902787  NM_001143979       NDE1
11  chr16   15423588       15902787  NM_001184998   KIAA0430
12  chr16   15423588       15902787  NM_001277325     NPIPA5
15  chr16   15423588       15902787     NR_030159     MIR484
16  chr16   15423588       15902787     NR_106761    MIR6506,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   20713081       20816679  NM_001145004   GOLGA6L6
1  chr15   20713081       20816679     NR_027411   GOLGA8CP
2   chr3  162872263      163304494     NR_033945  LINC01192
3   chr4  182004655      182120250     NR_033918  LINC00290
4   chr7  110555963      111254673  NM_001099658      LRRN3
5   chr7  110555963      111254673  NM_001244606     IMMP2L,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr4   69323365       69481994  NM_001077    UGT2B17
1  chr4   69323365       69481994  NM_014058  TMPRSS11E
2  chr9   22355669       22515225  NM_022160     DMRTA1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21546409       21706940  NM_001077180        METTL9
1   chr16   21546409       21706940  NM_001161683          OTOA
3   chr16   21546409       21706940     NM_005849         IGSF6
5   chr16   21546409       21706940     NR_110930  LOC101927814
6    chr4  145094922      145827762     NM_022475          HHIP
7    chr4  145094922      145827762     NR_037595      HHIP-AS1
8    chr5  109851242      110016605  NM_001039763       TMEM232
9    chr7    5616099        5831932     NM_003088         FSCN1
10   chr7    5616099        5831932     NM_207116        RNF216
11   chr7    5616099        5831932     NR_046834    RNF216-IT1
12   chr7    5616099        5831932     NR_106934       MIR6874
13   chr7  110622354      110769636  NM_001099658         LRRN3
14   chr7  110622354      110769636  NM_001244606        IMMP2L
16   chr8    3928364        4041816     NM_033225         CSMD1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   27145335       27294530  NM_001080406   C12orf71
1   chr12   27145335       27294530  NM_001271811      MED21
2   chr12   27145335       27294530     NM_016551     TM7SF3
3   chr17   21388027       21592039  NM_001113434   C17orf51
4    chr2   97200539       97336243  NM_001115016     KANSL3
5    chr2   97200539       97336243  NM_001293083     FER1L5
6    chr2   97200539       97336243  NM_001319085     ARID5A
9    chr7   14806276       14939104     NM_004080       DGKB
11   chr7   75744522       75891457  NM_001110199      SRRM3
12   chr9   39090121       39438963  NM_001085452  SPATA31A1
13   chr9   39090121       39438963     NM_033655    CNTNAP3
14   chr9   39090121       39438963     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   28291162       28421187  NM_000275      OCA2
2  chr15   28291162       28421187  NM_004667     HERC2,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr10   54209473       54720686     NM_000242        MBL2
1  chr10   54209473       54720686     NR_120641   LINC01468
3  chr10   88959534       89075534  NM_001099338      NUTM2A
4  chr10   88959534       89075534     NR_024397  NUTM2A-AS1
5  chr17   63483898       63696019  NM_001037325      CEP112
8  chr17   63483898       63696019     NM_004655       AXIN2,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr9   41482902       41619926  NM_001113541  SPATA31A5
1  chr9   41482902       41619926     NM_015667  SPATA31A7
2  chr9   41482902       41619926     NR_003528    ZNF658B
3  chr9   41482902       41619926     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   30308776       30432118  NM_001282472   GOLGA8J
1  chr15   30308776       30432118     NR_026859    ULK4P3
2  chr15   30308776       30432118     NR_033933   GOLGA8T
3   chr4   71385145       71583152  NM_001130709     RUFY3
4   chr4   71385145       71583152  NM_001286731      AMTN
5   chr4   71385145       71583152     NM_016519      AMBN
6   chr4   71385145       71583152     NM_020368      UTP3
7   chr4   71385145       71583152     NM_031889      ENAM
8   chr4   71385145       71583152     NM_144646    JCHAIN, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102424935      104048891  NM_001286997  LOC101928436
1    chr1  102424935      104048891     NM_001854       COL11A1
2    chr1  102424935      104048891     NR_110211         OLFM3
3   chr11    7851843        8028867  NM_001003745        OR10A3
4   chr11    7851843        8028867  NM_001004461        OR10A6
5   chr11    7851843        8028867     NM_003754         EIF3F
6   chr11    7851843        8028867     NM_176821        NLRP10
7   chr11    7851843        8028867     NR_027711        OR5E1P
8   chr11    7851843        8028867     NR_036678     LOC283299
9    chr7   75365634       75491796  NM_001243198          HIP1
10   chr7   75365634       75491796     NM_002991         CCL24
11   chr7   75365634       75491796     NM_006072         CCL26,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   58898100       58998259     NM_001110     ADAM10
1  chr15   58898100       58998259     NR_073415  HSP90AB4P
2   chr4   91156548       91268064  NM_001145065     CCSER1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   38166601       38340214  NM_001310135          TTC6
1    chr2  153089159      153309708     NM_052905         FMNL2
2   chr21   13649813       14833628     NR_026916    ANKRD30BP2
3   chr21   13649813       14833628     NR_036164     MIR3156-3
4   chr22   20138390       21696076     NM_000185      SERPIND1
5   chr22   20138390       21696076  NM_001018060         AIFM3
7   chr22   20138390       21696076  NM_001159554         P2RX6
8   chr22   20138390       21696076  NM_001242313      TMEM191B
9   chr22   20138390       21696076  NM_001256523         ZNF74
10  chr22   20138390       21696076  NM_001291006       LRRC74B
11  chr22   20138390       21696076  NM_001293236         MED15
13  chr22   20138390       21696076     NM_004173        SLC7A4
14  chr22   20138390       21696076     NM_004782        SNAP29
15  chr22   20138390       21696076     NM_005207          CRKL
17  chr22   20138390       21696076     NM_006767         LZTR1
18  chr22   20138390       21696076     NM_015672        RIMBP3
19  chr22   20138390       21696076     NM_023004         RTN4R
20  chr22   20138390       21696076     NM_030573         THAP7
21  chr22   20138390       21696076     NM_033257        DGCR6L
22  chr22   20138390       21696076     NM_058004         PI4KA
23  chr22   20138390       21696076     NM_153334        SCARF2
24  chr22   20138390       21696076     NR_002829        P2RX6P
25  chr22   20138390       21696076     NR_003563       PI4KAP1
26  chr22   20138390       21696076     NR_003608       TUBA3FP
27  chr22   20138390       21696076     NR_024583     POM121L8P
28  chr22   20138390       21696076     NR_024592     POM121L4P
29  chr22   20138390       21696076     NR_026815      TMEM191A
30  chr22   20138390       21696076     NR_026919     LINC00896
31  chr22   20138390       21696076     NR_027051     THAP7-AS1
33  chr22   20138390       21696076     NR_030379        MIR649
34  chr22   20138390       21696076     NR_031618       MIR1286
35  chr22   20138390       21696076     NR_033825        KLHL22
36  chr22   20138390       21696076     NR_037566         BCRP2
37  chr22   20138390       21696076     NR_038460     LOC284865
38  chr22   20138390       21696076     NR_108107       FAM230B
39  chr22   20138390       21696076     NR_110537  LOC101928891
40  chr22   20138390       21696076     NR_136559  LOC100996335
41  chr22   20138390       21696076     NR_136560       FAM230A
42  chr22   20138390       21696076     NR_136569     LOC729461
43  chr22   20138390       21696076     NR_136572  LOC101927859
44  chr22   20138390       21696076     NR_136575  LOC102724728
46   chr6  162720169      163151124  NM_001080378         PACRG
48   chr6  162720169      163151124     NM_013988         PARK2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   81481588       81595041     NR_029407     LOC642361
1  chr10   81481588       81595041     NR_120611    NUTM2B-AS1
4  chr11   86686742       86902738  NM_001168724       TMEM135
5  chr11   86686742       86902738     NR_038905  LOC100506368
6  chr17   21861558       21985455     NR_027084      FLJ36000,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   17803492       17986311     NR_039770       MIR3974
1   chr16   21502862       21635004  NM_001077180        METTL9
3   chr16   21502862       21635004     NR_002594      SLC7A5P2
4   chr16   21502862       21635004     NR_027155        SMG1P3
5   chr16   21502862       21635004     NR_049833     MIR3680-2
6   chr16   21502862       21635004     NR_110930  LOC101927814
7   chr19   57920911       58386847  NM_001023561        ZNF749
8   chr19   57920911       58386847  NM_001077426        ZNF586
9   chr19   57920911       58386847  NM_001098491        ZNF419
10  chr19   57920911       58386847  NM_001144068        ZNF772
11  chr19   57920911       58386847  NM_001144989        ZNF814
12  chr19   57920911       58386847  NM_001199295        ZNF549
13  chr19   57920911       58386847  NM_001204817        ZNF587
14  chr19   57920911       58386847  NM_001204818       ZNF587B
15  chr19   57920911       58386847  NM_001270938        ZNF551
16  chr19   57920911       58386847  NM_001277090        ZNF550
17  chr19   57920911       58386847  NM_001304334        ZNF773
19  chr19   57920911       58386847  NM_001321145          ZIK1
20  chr19   57920911       58386847  NM_001321375        ZNF671
21  chr19   57920911       58386847  NM_001321981        ZNF530
22  chr19   57920911       58386847  NM_001322306        ZNF211
23  chr19   57920911       58386847  NM_001330617         ZNF17
24  chr19   57920911       58386847     NM_003435        ZNF134
26  chr19   57920911       58386847     NM_017879        ZNF416
27  chr19   57920911       58386847     NM_020633         VN1R1
28  chr19   57920911       58386847     NM_024762        ZNF552
30  chr19   57920911       58386847     NM_152677        ZSCAN4
31  chr19   57920911       58386847     NM_173632        ZNF776
32  chr19   57920911       58386847     NR_024162      FKBP1AP1
33  chr19   57920911       58386847     NR_110975        ZNF154, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr1  193299190      193504196  NR_125789  LINC01031,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  142702582      142911249     NR_046228   ANKRD20A12P
1  chr16   21551422       21653612  NM_001077180        METTL9
3  chr16   21551422       21653612     NM_005849         IGSF6
4  chr16   21551422       21653612     NR_110930  LOC101927814
5  chr21   23091776       23210520     NR_038872     LINC00317
6  chr21   23091776       23210520     NR_109958     LINC01425
7   chr5   98747155       99325829     NR_110562  CTD-2151A2.1
8   chr9   39085830       39204640     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   19625922       19743403  NM_001142308    MALRD1
1  chr16   80761272       80883384     NM_152342     CDYL2
2  chr16   80761272       80883384     NR_131948   PRCAT47
3   chr7   64081491       64224958  NM_001282360    ZNF107
5   chr7   64081491       64224958     NR_106898   MIR6839,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr9   41920592       42021326  NR_003670        FGF7P3
1  chr9   41920592       42021326  NR_015363         GLIDR
4  chr9   41920592       42021326  NR_126048  LOC102724238
5  chr9   41920592       42021326  NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr12   10588759       10806491  NM_001300739       MAGOHB
1   chr12   10588759       10806491  NM_001304448        KLRC1
4   chr12   10588759       10806491     NM_018423        STYK1
6   chr12   10588759       10806491     NR_028045       KLRA1P
7   chr12   27216036       27352064  NM_001080406     C12orf71
8    chr3  116066778      116271037  NM_001318915        LSAMP
9    chr3  116066778      116271037     NR_109998    LSAMP-AS1
10   chr3  162929874      163054597     NR_033945    LINC01192
11   chr3  193054367      193566588     NM_015560         OPA1
12   chr3  193054367      193566588     NM_032279      ATP13A4
13   chr3  193054367      193566588     NM_198505      ATP13A5
14   chr3  193054367      193566588     NR_046634     OPA1-AS1
15   chr3  193054367      193566588     NR_046726  ATP13A4-AS1
17   chr6  162567971      162693584     NM_013988        PARK2
18   chr8    3651226        3775949     NM_033225        CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67309840       67690941     NM_000695       ALDH3B2
1   chr11   67309840       67690941     NM_000852         GSTP1
3   chr11   67309840       67690941  NM_001166102        NDUFV1
4   chr11   67309840       67690941  NM_001243750         NUDT8
5   chr11   67309840       67690941     NM_005995         TBX10
6   chr11   67309840       67690941     NM_080658          ACY3
8   chr11   67309840       67690941     NR_024249      FAM86C2P
9   chr11   67309840       67690941     NR_033791        DOC2GP
10  chr11   67309840       67690941     NR_130935      C11orf72
11  chr14   26605032       28373201     NM_002515         NOVA1
13  chr14   26605032       28373201     NR_036193       MIR4307
14  chr14   26605032       28373201     NR_039992     LINC00645
15  chr14   26605032       28373201     NR_110033  LOC101927062
16  chr14   26605032       28373201     NR_110041     MIR4307HG
17  chr14   26605032       28373201     NR_110556  LOC102724890
18  chr14   26605032       28373201     NR_130461       MIR3171
19   chr5   99721001       99854251     NR_027503  LOC100133050
20   chr6  162379607      162697447     NM_013988         PARK2
21   chr7   69299885       69429068  NM_001127231         AUTS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145091199      145733241  NM_001012758        NUDT17
1    chr1  145091199      145733241  NM_001039888      ANKRD34A
2    chr1  145091199      145733241  NM_001184795        PEX11B
3    chr1  145091199      145733241  NM_001201325         PDZK1
4    chr1  145091199      145733241  NM_001277444         NBPF9
5    chr1  145091199      145733241  NM_001278267        NBPF20
6    chr1  145091199      145733241  NM_001280799       ANKRD35
7    chr1  145091199      145733241  NM_001302371        NBPF10
8    chr1  145091199      145733241  NM_001303040        ITGA10
9    chr1  145091199      145733241  NM_001303456        POLR3C
10   chr1  145091199      145733241  NM_001313972         TXNIP
12   chr1  145091199      145733241     NM_004892        SEC22B
13   chr1  145091199      145733241     NM_005105         RBM8A
14   chr1  145091199      145733241     NM_006099         PIAS3
17   chr1  145091199      145733241     NM_007053         CD160
18   chr1  145091199      145733241     NM_014455        RNF115
19   chr1  145091199      145733241     NM_032305       POLR3GL
20   chr1  145091199      145733241     NM_145277          HFE2
21   chr1  145091199      145733241     NM_153713         LIX1L
22   chr1  145091199      145733241     NM_203458      NOTCH2NL
23   chr1  145091199      145733241     NR_002328        GNRHR2
27   chr1  145091199      145733241     NR_104217       NBPF25P
28   chr1  145091199      145733241     NR_106794       MIR6736
29   chr1  145091199      145733241     NR_125967  LOC101928979
30  chr10   53138408       53322722  NM_001098512         PRKG1
32   chr5   17765510       17918776     NR_134286     LOC646241
34   chr7   63969183       64373465  NM_001130022        ZNF680
35   chr7   63969183       64373465  NM_001160183        ZNF138
36   chr7   63969183       64373465  NM_001282360        ZNF107
37   chr7   63969183       64373465     NM_021148        ZNF273
39   chr7   63969183       64373465     NR_033245     LOC641746
41   chr7   63969183       64373465     NR_077227  LOC100128885
43   chr7   63969183       64373465     NR_106898       MIR6839
44   chr7  110634228      110855760  NM_001099658         LRRN3
45   chr7  110634228      110855760  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13  102917520      103047545  NM_001321932      FGF14
7   chr13  102917520      103047545     NR_036486  FGF14-IT1
8   chr13  102917520      103047545     NR_036487  FGF14-AS2
9   chr13  102917520      103047545     NR_125912  FGF14-AS1
10   chr2  213006182      213107308  NM_001042599      ERBB4
11   chr7  102118780      102236554  NM_001031618     SPDYE2
12   chr7  102118780      102236554  NM_001097615    POLR2J3
13   chr7  102118780      102236554  NM_001277335     RASA4B
15   chr7  102118780      102236554     NM_006234     POLR2J
16   chr7  102118780      102236554     NM_006989      RASA4
17   chr9    9463133        9571079     NM_002839      PTPRD
18   chr9   39090749       39212588     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   22123101       22500806  NM_001004719         OR4M2
1   chr15   22123101       22500806  NM_001005241         OR4N4
2   chr15   22123101       22500806     NR_015416     LOC727924
3   chr15   22123101       22500806     NR_028067        OR4N3P
4   chr15   22123101       22500806     NR_028506         NF1P2
5   chr15   22123101       22500806     NR_110480  LOC101927079
7   chr15   22123101       22500806     NR_128721     MIR5701-3
8   chr15   22123101       22500806     NR_135666   IGHV1OR15-3
9   chr15   22123101       22500806     NR_135694   IGHV1OR15-1
10  chr16   21745341       22022615  NM_001161683          OTOA
11  chr16   21745341       22022615  NM_001164579      C16orf52
12  chr16   21745341       22022615  NM_001310148        NPIPB4
13  chr16   21745341       22022615     NM_003366        UQCRC2
16  chr16   21745341       22022615     NM_173806         PDZD9
17  chr16   21745341       22022615     NR_003370        RRN3P1
18   chr9   39041960       39370503  NM_001085452     SPATA31A1
19   chr9   39041960       39370503     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   85436542       85671509  NM_001079910     LRRIQ1
1   chr19   24228460       24379146  NM_001278661     ZNF254
4   chr19   24228460       24379146     NR_003603   HAVCR1P1
5    chr3     616863         760865     NR_110118  LINC01266
6    chr4  167602137      169037627  NM_001204353     SPOCK3
9    chr4  167602137      169037627     NM_007193     ANXA10
10   chr7  110685743      110897864  NM_001099658      LRRN3
11   chr7  110685743      110897864  NM_001244606     IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   12986885       13091180  NM_001010889       PRAMEF6
1   chr1   12986885       13091180  NM_001010890       PRAMEF9
2   chr1   12986885       13091180  NM_001099850      PRAMEF18
3   chr1   12986885       13091180  NM_001100631      PRAMEF22
4   chr1   12986885       13091180  NM_001306072      PRAMEF26
5   chr1   12986885       13091180  NM_001310134      PRAMEF25
6   chr1  102414233      102558340     NR_110211         OLFM3
7   chr9     517577         629256  NM_001256876         KANK1
9   chr9   67181722       67403862     NR_002817        AQP7P1
10  chr9   67181722       67403862     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12816282       13083273  NM_001009611      PRAMEF4
1    chr1   12816282       13083273  NM_001010889      PRAMEF6
2    chr1   12816282       13083273  NM_001010890      PRAMEF9
3    chr1   12816282       13083273  NM_001012276      PRAMEF8
4    chr1   12816282       13083273  NM_001013631     HNRNPCL1
5    chr1   12816282       13083273  NM_001080830     PRAMEF12
6    chr1   12816282       13083273  NM_001099850     PRAMEF18
7    chr1   12816282       13083273  NM_001100631     PRAMEF22
8    chr1   12816282       13083273  NM_001146181     HNRNPCL3
9    chr1   12816282       13083273  NM_001146344     PRAMEF11
10   chr1   12816282       13083273  NM_001294139      PRAMEF1
11   chr1   12816282       13083273  NM_001302551     HNRNPCL4
12   chr1   12816282       13083273  NM_001306072     PRAMEF26
13   chr1   12816282       13083273  NM_001310134     PRAMEF25
15   chr1   12816282       13083273     NM_023014      PRAMEF2
16   chr1   12816282       13083273     NM_152290     C1orf158
17  chr12   72712682       72822780     NM_013381        TRHDE
18  chr16   28699770       28921551  NM_001145795        SH2B1
20  chr16   28699770       28921551  NM_001199142        EIF3C
21  chr16   28699770       28921551  NM_001286075       ATP2A1
23  chr16   28699770       28921551  NM_001287251       NPIPB9
25  chr16   28699770       28921551  NM_001317856       EIF3CL
26  chr16   28699770       28921551     NM_003321         TUFM
29  chr16   28699770       28921551     NM_024816       RABEP2
30  chr16   28699770       28921551     NM_148416       ATXN2L
31  chr16   28699770       28921551     NR_039872      MIR4721
32  chr16   28699770       28921551     NR_046287   ATP2A1-AS1
33  chr16   28699770       28921551     NR_107058    MIR6862-2
34  chr20   14899652       15000317     NM_080676      MACROD2
35  chr20   14899652       15000317     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   54171271       54442267     NR_120641  LINC01468
2   chr12   86306919       86442956     NM_013244     MGAT4C
3   chr12   97932250       98111660     NR_029678   MIR135A2
4   chr12   97932250       98111660     NR_077241  LOC643711
5   chr15   36176549       36329422     NR_039735    MIR4510
6   chr21   22353621       22548894     NM_004540      NCAM2
7    chr4   71416015       71925061     NM_000788        DCK
8    chr4   71416015       71925061  NM_001037442      RUFY3
9    chr4   71416015       71925061  NM_001098477      GRSF1
11   chr4   71416015       71925061  NM_001244766      MOB1B
17   chr4   71416015       71925061     NM_016519       AMBN
18   chr4   71416015       71925061     NM_020368       UTP3
19   chr4   71416015       71925061     NM_031889       ENAM
20   chr4   71416015       71925061     NM_144646     JCHAIN
21   chr4  121660653      121793529     NM_018699      PRDM5
22   chr5  106813599      106917482     NM_001962      EFNA5
23   chr7  110383812      110603586  NM_001244606     IMMP2L
25   chr9    7784414        8012947  NM_001318058    TMEM261,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr20    8551867        8898041  NM_015192     PLCB1
1   chr6  140447569      140648667  NR_037441   MIR3668
2   chr6  162674077      162792967  NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   30340539       31727001  NM_001080509       TSPAN11
1   chr12   30340539       31727001  NM_001135811        FAM60A
3   chr12   30340539       31727001  NM_001190995          IPO8
4   chr12   30340539       31727001  NM_001308339       DENND5B
5   chr12   30340539       31727001  NM_001319844       CAPRIN2
8   chr12   30340539       31727001     NM_030653         DDX11
11  chr12   30340539       31727001     NR_026806      FLJ13224
12  chr12   30340539       31727001     NR_038927     DDX11-AS1
13  chr12   30340539       31727001     NR_040245     LINC00941
14  chr12   30340539       31727001     NR_135046     LOC645485
15  chr20   14643450       14939772     NM_080676       MACROD2
16  chr20   14643450       14939772     NR_037841   MACROD2-AS1
18   chr3  131286621      132844307     NM_001099          ACPP
20   chr3  131286621      132844307  NM_001136469       TMEM108
22   chr3  131286621      132844307  NM_001289112         CPNE4
23   chr3  131286621      132844307  NM_001320210          UBA5
25   chr3  131286621      132844307  NM_001329126       DNAJC13
27   chr3  131286621      132844307     NM_016557         ACKR4
29   chr3  131286621      132844307     NM_153240         NPHP3
33   chr3  131286621      132844307     NR_002811     NPHP3-AS1
34   chr3  131286621      132844307     NR_037804  NPHP3-ACAD11
35   chr3  131286621      132844307     NR_049890       MIR5704
36   chr3  131286621      132844307     NR_132428        ACAD11
37   chr5   17734069       17861136     NR_134286     LOC646241
39   chr5   95308552       95528326     NR_030309        MIR583
40   chr5   95308552       95528326     NR_130776  LOC101929710,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr1  102427755      102622432  NR_110211      OLFM3
1  chr3     607969         839748  NR_110118  LINC01266,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   97235887       99004056  NM_001243270     CNTN5
2  chr15   28815882       28983268  NM_001282468   GOLGA8M
3  chr15   28815882       28983268     NR_026589   WHAMMP2
4  chr15   28815882       28983268     NR_036443   HERC2P9
5  chr20   41061111       41260585     NM_133170     PTPRT
6   chr9   41536721       41671248     NR_003528   ZNF658B,    chrom  cnv_start  cnv_terminate       tx_name      gene_name
0  chr16   15187193       15308988  NM_001285449         PDXDC1
1  chr16   15187193       15308988  NM_001301064           RRN3
3  chr16   15187193       15308988     NR_037466      MIR3180-4
4  chr16   15187193       15308988     NR_106775      MIR6511B1
5  chr16   15187193       15308988     NR_106965      MIR6511B2
6  chr16   15187193       15308988     NR_123721  PKD1P6-NPIPP1
8  chr16   15187193       15308988     NR_125434   LOC100505915,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67191241       67301626  NM_001018070        CORO1B
1   chr11   67191241       67301626  NM_001078650       TMEM134
2   chr11   67191241       67301626  NM_001166222        CARNS1
3   chr11   67191241       67301626  NM_001300895         CABP4
5   chr11   67191241       67301626  NM_001302959           AIP
6   chr11   67191241       67301626  NM_001318496         CABP2
7   chr11   67191241       67301626     NM_003952       RPS6KB2
9   chr11   67191241       67301626     NM_004910       PITPNM1
10  chr11   67191241       67301626     NM_005608       PTPRCAP
11  chr11   67191241       67301626     NM_005851       CDK2AP2
14  chr11   67191241       67301626     NM_206997        GPR152
16  chr11   67191241       67301626     NR_106810       MIR6752
17  chr12   85469501       85809158  NM_001079910        LRRIQ1
18  chr12   85469501       85809158     NM_006982          ALX1
19  chr16   78814165       78930758     NM_016373          WWOX
20   chr7  143001423      146423609     NM_000083         CLCN1
21   chr7  143001423      146423609  NM_001001659        OR2A14
22   chr7  143001423      146423609  NM_001003702      ARHGEF35
23   chr7  143001423      146423609  NM_001004135        OR2A12
24   chr7  143001423      146423609  NM_001004488        OR2A25
25   chr7  143001423      146423609  NM_001004685         OR2F2
26   chr7  143001423      146423609  NM_001005281         OR6B1
27   chr7  143001423      146423609  NM_001005287         OR2A1
29   chr7  143001423      146423609  NM_001005328         OR2A7
30   chr7  143001423      146423609  NM_001005480         OR2A2
31   chr7  143001423      146423609  NM_001008747       CTAGE15
32   chr7  143001423      146423609  NM_001080413         NOBOX
33   chr7  143001423      146423609  NM_001130025         TCAF2
35   chr7  143001423      146423609  NM_001206938         TCAF1
37   chr7  143001423      146423609     NM_001224         CASP2
38   chr7  143001423      146423609  NM_001278297       FAM131B
39   chr7  143001423      146423609  NM_001278507        CTAGE8
40   chr7  143001423      146423609  NM_001322263  LOC100507507
41   chr7  143001423      146423609     NM_003461           ZYX
42   chr7  143001423      146423609     NM_005232         EPHA1
43   chr7  143001423      146423609     NM_005435       ARHGEF5
44   chr7  143001423      146423609     NM_012365         OR2A5
45   chr7  143001423      146423609     NM_012369         OR2F1
46   chr7  143001423      146423609     NM_014141       CNTNAP2
49   chr7  143001423      146423609     NM_022445          TPK1
52   chr7  143001423      146423609     NM_176883       TAS2R41
53   chr7  143001423      146423609     NM_177437       TAS2R60
54   chr7  143001423      146423609     NM_178561        CTAGE6
55   chr7  143001423      146423609     NM_198495        CTAGE4
57   chr7  143001423      146423609     NR_002157        OR2A9P
59   chr7  143001423      146423609     NR_002158       OR2A20P
61   chr7  143001423      146423609     NR_015421     LOC154761
62   chr7  143001423      146423609     NR_033897     EPHA1-AS1
63   chr7  143001423      146423609     NR_033942     ARHGEF34P
64   chr7  143001423      146423609     NR_106952       MIR6892
65   chr7  143001423      146423609     NR_110549       TCAF2P1
67   chr7  143001423      146423609     NR_126022  LOC101928605
68   chr7  143001423      146423609     NR_126023     OR2A1-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   56540908       56745983  NM_001142770     PCDH15
3  chr14   37937236       38038143  NM_001195296     MIPOL1
4  chr17    5551692        5724861     NR_040000  LOC339166,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   41368213       42662744  NM_001009814          VWA8
1   chr13   41368213       42662744  NM_001110798         NAA16
2   chr13   41368213       42662744  NM_001145353          ELF1
3   chr13   41368213       42662744  NM_001204504          DGKH
4   chr13   41368213       42662744     NM_004294         MTRF1
5   chr13   41368213       42662744     NM_007187          WBP4
6   chr13   41368213       42662744     NM_014059          RGCC
7   chr13   41368213       42662744     NM_014252      SLC25A15
10  chr13   41368213       42662744     NM_032138        KBTBD7
11  chr13   41368213       42662744     NM_152903        KBTBD6
14  chr13   41368213       42662744     NR_002163       OR7E37P
15  chr13   41368213       42662744     NR_003365       SUGT1P3
16  chr13   41368213       42662744     NR_030352        MIR621
17  chr13   41368213       42662744     NR_036127       MIR3168
18  chr13   41368213       42662744     NR_038259       TPTE2P5
19  chr13   41368213       42662744     NR_039974      VWA8-AS1
20  chr13   41368213       42662744     NR_049803       MIR5006
21  chr13   41368213       42662744     NR_120423  LOC101929140
22  chr14   21949550       22152355  NM_001001912         OR4E2
23  chr14   21949550       22152355  NM_001005465        OR10G3
24  chr14   21949550       22152355  NM_001005466        OR10G2
25  chr14   21949550       22152355  NM_001303523          TOX4
26  chr14   21949550       22152355  NM_001317107         OR4E1
27  chr14   21949550       22152355     NM_019852        METTL3
28  chr14   21949550       22152355     NR_111966         SALL2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   37591262       38000127  NM_001171170      SLC25A21
1  chr14   37591262       38000127  NM_001195296        MIPOL1
2  chr14   37591262       38000127     NR_033240  SLC25A21-AS1
3   chr5   19632839       19970956  NM_001291956         CDH18
6   chr7   75317972       75524896  NM_001040457        RHBDD2
7   chr7   75317972       75524896  NM_001243198          HIP1
8   chr7   75317972       75524896     NM_002991         CCL24
9   chr7   75317972       75524896     NM_006072         CCL26,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  108017009      108570905  NM_001079874      VAV3
1    chr1  108017009      108570905  NM_001113228     NTNG1
5    chr1  108017009      108570905     NR_046653  VAV3-AS1
6    chr1  108017009      108570905     NR_107006   MIR7852
7   chr16   10554229       10684934  NM_001256160   ATF7IP2
8   chr16   10554229       10684934     NM_001424      EMP2
10  chr18     563467         875274  NM_001012716    TYMSOS
11  chr18     563467         875274     NM_001071      TYMS
12  chr18     563467         875274  NM_001126123    ENOSF1
13  chr18     563467         875274  NM_001289036     CLUL1
17  chr18     563467         875274     NM_004066     CETN1
18  chr18     563467         875274     NM_005433      YES1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   89017598       89398404  NM_001178118      MINPP1
2   chr10   89017598       89398404     NR_024397  NUTM2A-AS1
3   chr10   89017598       89398404     NR_029408   LINC00863
4   chr10   89017598       89398404     NR_039825     MIR4678
5   chr10   89017598       89398404     NR_046091   LINC00864
6   chr10   89017598       89398404     NR_075100      NUTM2D
8   chr10   89001065       89155075     NR_024397  NUTM2A-AS1
9   chr10   89001065       89155075     NR_029408   LINC00863
10  chr10   89001065       89155075     NR_075100      NUTM2D
12  chr11    7813446        8306654  NM_001003745      OR10A3
13  chr11    7813446        8306654  NM_001004461      OR10A6
14  chr11    7813446        8306654  NM_001135109        RIC3
15  chr11    7813446        8306654  NM_001270428        LMO1
16  chr11    7813446        8306654     NM_003320         TUB
17  chr11    7813446        8306654     NM_003754       EIF3F
18  chr11    7813446        8306654     NM_153444       OR5P2
19  chr11    7813446        8306654     NM_153445       OR5P3
20  chr11    7813446        8306654     NM_176821      NLRP10
22  chr11    7813446        8306654     NR_027711      OR5E1P
23  chr11    7813446        8306654     NR_036678   LOC283299
26  chr11    7813446        8306654     NR_120537     TUB-AS1
27  chr11    7813446        8306654     NR_125366      CASC23
29  chr19     917942        1039781     NM_005224      ARID3A
30  chr19     917942        1039781     NM_024100       WDR18
31  chr19     917942        1039781     NM_032551      KISS1R
32  chr19     917942        1039781     NM_033420     TMEM259
33  chr19     917942        1039781     NM_138690      GRIN3B
34  chr19     917942        1039781     NM_201277        CNN2
35  chr19     917942        1039781     NR_125730      RNU6-2
36   chr9   28683966       28900099  NM_001258282      LINGO2
38   chr9   28683966       28900099     NR_030597      MIR876
39   chr9   28683966       28900099     NR_030618      MIR873,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  145073232      145174847  NM_001277444         NBPF9
1   chr1  145073232      145174847  NM_001278267        NBPF20
2   chr1  145073232      145174847     NM_004892        SEC22B
3   chr1  145073232      145174847     NM_022359       PDE4DIP
4   chr7  143010950      143155965     NM_000083         CLCN1
5   chr7  143010950      143155965  NM_001278297       FAM131B
6   chr7  143010950      143155965  NM_001322263  LOC100507507
7   chr7  143010950      143155965     NM_003461           ZYX
8   chr7  143010950      143155965     NM_005232         EPHA1
10  chr7  143010950      143155965     NM_177437       TAS2R60
11  chr7  143010950      143155965     NR_033897     EPHA1-AS1
12  chr7  143010950      143155965     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4222860        4396833  NM_001005161        OR52B4
1   chr11    4222860        4396833     NR_047550  LOC100506082
2   chr15   20643706       20880071  NM_001145004      GOLGA6L6
3   chr15   20643706       20880071     NR_027411      GOLGA8CP
4   chr15   20643706       20880071     NR_027992        NBEAP1
5   chr15   20643706       20880071     NR_036432       HERC2P3
6    chr4   69229767       69387962     NM_014058     TMPRSS11E
7    chr4  188321943      188743400     NR_038931     LOC339975
8    chr4  188321943      188743400     NR_110436  LOC100506272
9    chr7   64094256       64218198  NM_001282360        ZNF107
11   chr7   64094256       64218198     NR_106898       MIR6839
12   chr9   11857865       13093922     NM_000550         TYRP1
13   chr9   11857865       13093922     NM_203403       LURAP1L
14   chr9   11857865       13093922     NR_125775   LURAP1L-AS1
15   chr9   11857865       13093922     NR_132976      SNORD137,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   40254754       40498032  NM_001258419        LRRC4C
2  chr14   81669463       81821923  NM_001256430         STON2
3  chr14   81669463       81821923  NM_001278940        GTF2A1
6  chr14   81669463       81821923     NR_135252  LOC101928504
7  chr21   28099637       28214646     NM_006988       ADAMTS1
8   chr3  105529567      105740488  NM_001321786          CBLB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67299836       67408903     NM_000852         GSTP1
1   chr11   67299836       67408903  NM_001166102        NDUFV1
2   chr11   67299836       67408903  NM_001243750         NUDT8
3   chr11   67299836       67408903     NM_005995         TBX10
5   chr11   67299836       67408903     NR_033791        DOC2GP
6   chr11   67299836       67408903     NR_130935      C11orf72
7   chr16   21554627       21825758  NM_001077180        METTL9
8   chr16   21554627       21825758  NM_001161683          OTOA
10  chr16   21554627       21825758     NM_005849         IGSF6
13  chr16   21554627       21825758     NR_003370        RRN3P1
14  chr16   21554627       21825758     NR_110930  LOC101927814,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143076349      143336569     NR_110761  LOC102723769
1   chr3  189605063      189728198  NM_001134418          P3H2
2   chr3  189605063      189728198  NM_001329148          TP63
6   chr5    5893389        7268696  NM_001145161       UBE2QL1
7   chr5    5893389        7268696  NM_001171805         PAPD7
9   chr5    5893389        7268696  NM_001324322        SRD5A1
10  chr5    5893389        7268696     NM_032286         MED10
11  chr5    5893389        7268696     NR_024423     LINC01018
13  chr5    5893389        7268696     NR_028351      FLJ33360
14  chr5    5893389        7268696     NR_036242       MIR4278
15  chr5    5893389        7268696     NR_037947         NSUN2
16  chr5    5893389        7268696     NR_103771  LOC100505625
17  chr6  116568625      116695212  NM_001322939           DSE
20  chr6  116568625      116695212     NM_003309        TSPYL1
21  chr6  116568625      116695212     NM_021648        TSPYL4
25  chr9   88367213       88765432  NM_001321881         NAA35
27  chr9   88367213       88765432     NM_016548         GOLM1
30  chr9   88367213       88765432     NR_029410     LOC389765
31  chr9   88367213       88765432     NR_110996  LOC101927623,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr17   21449290       21550532  NM_001113434  C17orf51,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr15   77835490       78109212  NM_001301186      LINGO1
10  chr15   77835490       78109212     NR_045123  LINGO1-AS1
11  chr15   77835490       78109212     NR_120361  LINGO1-AS2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   48329100       48440478  NM_001004702        OR4C3
1   chr11   48329100       48440478  NM_001005513       OR4C45
2   chr14   42084927       42212153  NM_001346175        LRFN5
3   chr19   47777576       48812527     NM_000234         LIG1
4   chr19   47777576       48812527     NM_000554          CRX
5   chr19   47777576       48812527  NM_001009813        MEIS3
6   chr19   47777576       48812527  NM_001128326        BSPH1
7   chr19   47777576       48812527  NM_001184901        CARD8
10  chr19   47777576       48812527  NM_001271749        C5AR2
12  chr19   47777576       48812527  NM_001277075       ZNF541
13  chr19   47777576       48812527  NM_001291296         KPTN
15  chr19   47777576       48812527  NM_001301062       ZNF114
19  chr19   47777576       48812527     NM_001736        C5AR1
20  chr19   47777576       48812527     NM_003009      SELENOW
21  chr19   47777576       48812527     NM_003167      SULT2A1
22  chr19   47777576       48812527     NM_003706      PLA2G4C
23  chr19   47777576       48812527     NM_014601         EHD2
24  chr19   47777576       48812527     NM_014681        DHX34
25  chr19   47777576       48812527     NM_015063       SLC8A2
26  chr19   47777576       48812527     NM_015710      GLTSCR2
27  chr19   47777576       48812527     NM_015711      GLTSCR1
29  chr19   47777576       48812527     NM_019855        CABP5
30  chr19   47777576       48812527     NM_022142      ELSPBP1
31  chr19   47777576       48812527     NM_144577      CCDC114
33  chr19   47777576       48812527     NM_178511       INAFM1
34  chr19   47777576       48812527     NM_198479        TPRX1
35  chr19   47777576       48812527     NM_199341     C19orf68
36  chr19   47777576       48812527     NR_003048      SNORD23
37  chr19   47777576       48812527     NR_004435      SNAR-A1
39  chr19   47777576       48812527     NR_004437     SNAR-A12
41  chr19   47777576       48812527     NR_024214      SNAR-A3
42  chr19   47777576       48812527     NR_024217      SNAR-C2
45  chr19   47777576       48812527     NR_024218      SNAR-C4
46  chr19   47777576       48812527     NR_024221      SNAR-C3
50  chr19   47777576       48812527     NR_038452     NAPA-AS1
51  chr19   47777576       48812527     NR_038457         NAPA
52  chr19   47777576       48812527     NR_040599    CARD8-AS1
53  chr19   47777576       48812527     NR_132363  PLA2G4C-AS1
56  chr19   47777576       48812527     NR_132382  GLTSCR2-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   68117919       68691581  NM_001127384        CTNNA3
2  chr10   68117919       68691581     NM_178011        LRRTM3
3  chr10   68117919       68691581     NR_111911  LOC101928961,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  110473022      110576715  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11  104584400      104785140     NR_034064        CASP12
1  chr11  104584400      104785140     NR_034078     LOC643733
2  chr14   45646833       45814737  NM_001308133         FANCM
3  chr14   45646833       45814737     NM_018353      MIS18BP1
4   chr5   99582956       99733261     NR_027503  LOC100133050,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr15   98267298       98698687     NM_183376       ARRDC4
1   chr15   98267298       98698687     NR_024172    LINC00923
2   chr15   98267298       98698687     NR_120325    LINC01582
3   chr20   14886543       15043071     NM_080676      MACROD2
4   chr20   14886543       15043071     NR_037841  MACROD2-AS1
6    chr7   75749283       75863161  NM_001110199        SRRM3
7    chr7  110462594      110575477  NM_001244606       IMMP2L
9    chr7  110608555      111151845  NM_001099658        LRRN3
10   chr7  110608555      111151845  NM_001244606       IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143498593      143902811  NM_001123068       PPIAL4G
1   chr1  143498593      143902811  NM_001287385        FAM72C
2   chr1  143498593      143902811  NM_001345942        FAM72D
5   chr1  143498593      143902811     NR_104014     LINC01138
6   chr1  143498593      143902811     NR_106967       MIR6077
7   chr1  143498593      143902811     NR_111930  LOC100132057
9   chr4   66481856       67011320  NM_001281766         EPHA5
12  chr4   66481856       67011320     NR_034138     EPHA5-AS1
13  chr7  132758233      132933450  NM_001317178        CHCHD3
15  chr7  132758233      132933450     NR_133931  LOC105375512
16  chr8  111873608      111993988     NR_125417     LINC01608
17  chr9   67215447       67663418     NR_002817        AQP7P1
18  chr9   67215447       67663418     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  152437189      152630642     NM_019060         CRCT1
1   chr1  152437189      152630642     NM_032563         LCE3D
2   chr1  152437189      152630642     NM_178431         LCE3A
3   chr1  152437189      152630642     NM_178433         LCE3B
4   chr1  152437189      152630642     NM_178434         LCE3C
5   chr1  152437189      152630642     NM_178435         LCE3E
6   chr1  152437189      152630642     NM_178438         LCE5A
7   chr2   52204423       52318003     NR_135237     LOC730100
8   chr7   64078288       64353600  NM_001160183        ZNF138
9   chr7   64078288       64353600  NM_001282360        ZNF107
11  chr7   64078288       64353600     NR_077227  LOC100128885
13  chr7   64078288       64353600     NR_106898       MIR6839
14  chr9   95635024       95858593  NM_001007101        ZNF484
15  chr9   95635024       95858593  NM_001083536          FGD3
17  chr9   95635024       95858593  NM_001287005         SUSD3
19  chr9   95635024       95858593     NR_111003     LOC642943
20  chr9   95635024       95858593     NR_121565  LOC101927954
21  chr9   95635024       95858593     NR_134468        CARD19,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   97316870       97514405  NM_001293083    FER1L5
1  chr2   97316870       97514405  NM_001322354    LMAN2L
2  chr2   97316870       97514405     NM_016466   ANKRD39
3  chr2   97316870       97514405     NM_017623     CNNM3
4  chr2   97316870       97514405     NM_020184     CNNM4
6  chr2   97316870       97514405     NM_144994   ANKRD23
7  chr2   97316870       97514405     NR_036074   MIR3127,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   85999111       86496148     NM_032229    SLITRK6
1   chr13   85999111       86496148     NR_046989  LINC00351
2   chr14   47767858       47889602  NM_001113498      MDGA2
5   chr16   68571574       69363216  NM_001039690      CHTF8
7   chr16   68571574       69363216  NM_001199280       HAS3
8   chr16   68571574       69363216  NM_001305204      ZFP90
10  chr16   68571574       69363216  NM_001317184       CDH1
11  chr16   68571574       69363216  NM_001317195       CDH3
13  chr16   68571574       69363216     NM_006750      SNTB2
14  chr16   68571574       69363216     NM_013245      VPS4A
15  chr16   68571574       69363216     NM_022341        PDF
16  chr16   68571574       69363216     NM_024562     TANGO6
17  chr16   68571574       69363216     NM_032382       COG8
18  chr16   68571574       69363216     NM_032830       UTP4
20  chr16   68571574       69363216     NR_106988  MIR7641-2
21   chr6  162573727      162701716     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12    5062466        5560026  NM_001102654          NTF3
1   chr12    5062466        5560026     NM_002234         KCNA5
2   chr12    5062466        5560026     NR_120476  LOC101929584
4    chr4  125388082      125785302  NM_001167882       ANKRD50
6    chr4  125388082      125785302     NR_110838  LOC101927087
7    chr7   94277533       94623202  NM_001166160       PPP1R9A
9    chr7   94277533       94623202  NM_001184962         PEG10
10   chr7   94277533       94623202  NM_001301139          SGCE
11   chr7  110704842      110862453  NM_001099658         LRRN3
12   chr7  110704842      110862453  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  130284584      132558724  NM_001002019          PUS1
2   chr12  130284584      132558724  NM_001190971        PIWIL1
3   chr12  130284584      132558724  NM_001261411        SFSWAP
4   chr12  130284584      132558724  NM_001300796           RAN
5   chr12  130284584      132558724     NM_003565          ULK1
7   chr12  130284584      132558724     NM_007197         FZD10
8   chr12  130284584      132558724     NM_015347        RIMBP2
9   chr12  130284584      132558724     NM_015409         EP400
10  chr12  130284584      132558724     NM_016155         MMP17
12  chr12  130284584      132558724     NM_133448      TMEM132D
13  chr12  130284584      132558724     NM_194356          STX2
14  chr12  130284584      132558724     NM_198827        ADGRD1
15  chr12  130284584      132558724     NR_002979       SNORA49
16  chr12  130284584      132558724     NR_024457  LOC100190940
17  chr12  130284584      132558724     NR_026670     LINC01257
18  chr12  130284584      132558724     NR_033834     FZD10-AS1
19  chr12  130284584      132558724     NR_103736     LOC338797
20  chr12  130284584      132558724     NR_131950        LACAT8
21  chr12  130284584      132558724     NR_135045  LOC107161159
22  chr22   20104581       20422421  NM_001242313      TMEM191B
23  chr22   20104581       20422421  NM_001243537       CCDC188
24  chr22   20104581       20422421  NM_001278639        RANBP1
27  chr22   20104581       20422421     NM_013373        ZDHHC8
28  chr22   20104581       20422421     NM_022727        TRMT2A
29  chr22   20104581       20422421     NM_023004         RTN4R
30  chr22   20104581       20422421     NM_033257        DGCR6L
31  chr22   20104581       20422421     NR_003563       PI4KAP1
32  chr22   20104581       20422421     NR_026919     LINC00896
33  chr22   20104581       20422421     NR_031618       MIR1286
34  chr22   20104581       20422421     NR_038460     LOC284865
35  chr22   20104581       20422421     NR_136560       FAM230A
36  chr22   20104581       20422421     NR_136572  LOC101927859
37   chr7   64189848       64391664  NM_001160183        ZNF138
38   chr7   64189848       64391664     NM_021148        ZNF273
40   chr7   93302958       93605250     NM_004126         GNG11
41   chr7   93302958       93605250     NM_006528         TFPI2
42   chr7   93302958       93605250     NM_021955         GNGT1
43   chr7   93302958       93605250     NR_039796       MIR4652
44   chr7   93302958       93605250     NR_133909          BET1
45   chr7   93302958       93605250     NR_134235  LOC105375401,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30269823       30481999  NM_001282472       GOLGA8J
1   chr15   30269823       30481999     NR_026859        ULK4P3
2   chr15   30269823       30481999     NR_033933       GOLGA8T
3   chr16   21504830       21622946  NM_001077180        METTL9
5   chr16   21504830       21622946     NR_002594      SLC7A5P2
6   chr16   21504830       21622946     NR_027155        SMG1P3
7   chr16   21504830       21622946     NR_049833     MIR3680-2
8   chr16   21504830       21622946     NR_110930  LOC101927814
9    chr4   68965535       69123489     NM_182502     TMPRSS11B
10   chr4   68965535       69123489     NM_207407     TMPRSS11F
11   chr4   68965535       69123489     NR_015446        FTLP10
12   chr4   68965535       69123489     NR_104048   TMPRSS11BNL
13   chr9   41901969       42029680     NR_003670        FGF7P3
14   chr9   41901969       42029680     NR_015363         GLIDR
17   chr9   41901969       42029680     NR_126048  LOC102724238
18   chr9   41901969       42029680     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67991814       69870730  NM_001127384        CTNNA3
1   chr10   67991814       69870730  NM_001142498         SIRT1
2   chr10   67991814       69870730  NM_001256267          MYPN
4   chr10   67991814       69870730  NM_001278187         HERC4
9   chr10   67991814       69870730     NM_021800       DNAJC12
11  chr10   67991814       69870730     NM_178011        LRRTM3
13  chr10   67991814       69870730     NR_106973       MIR7151
15  chr10   67991814       69870730     NR_111911  LOC101928961
16  chr10   67991814       69870730     NR_131184      POU5F1P5
17  chr10   68613863       68739408  NM_001127384        CTNNA3
19  chr10   68613863       68739408     NM_178011        LRRTM3
20  chr10   68613863       68739408     NR_111911  LOC101928961
21  chr16   15452091       15701086  NM_001128423        MPV17L
22  chr16   15452091       15701086  NM_001142469      C16orf45
23  chr16   15452091       15701086  NM_001184998      KIAA0430
24  chr16   15452091       15701086  NM_001277325        NPIPA5
26   chr4   93281412       93399503     NM_001510         GRID2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr2    1064831        2451293  NM_001329844      MYT1L
7   chr2    1064831        2451293     NM_012293       PXDN
9   chr2    1064831        2451293     NM_018968      SNTG2
10  chr2    1064831        2451293     NM_175719        TPO
12  chr2    1064831        2451293     NR_024468  MYT1L-AS1
13  chr2   75896365       76649718  NM_001201334      GCFC2, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   21041278       21167843  NM_001277303        POTEB2
1   chr15   21041278       21167843     NM_207355        POTEB3
2   chr15   21041278       21167843     NR_028506         NF1P2
3   chr15   21041278       21167843     NR_040094     LINC01193
4   chr15   21041278       21167843     NR_049895     MIR5701-2
6   chr17   29373652       29475267     NM_000267           NF1
8   chr17   29373652       29475267     NR_039886       MIR4733
9    chr4  169237902      169485390  NM_001012967        DDX60L
10   chr4  169237902      169485390  NM_001166108         PALLD
12   chr4  169237902      169485390     NM_017631         DDX60
13   chr7  123402600      124720399  NM_001024603       C7orf77
14   chr7  123402600      124720399  NM_001042594          POT1
15   chr7  123402600      124720399  NM_001136002      TMEM229A
16   chr7  123402600      124720399  NM_001174044         SPAM1
19   chr7  123402600      124720399     NM_005302         GPR37
20   chr7  123402600      124720399     NM_012269         HYAL4
21   chr7  123402600      124720399     NR_002731        HYALP1
22   chr7  123402600      124720399     NR_110180  LOC101928211
23   chr7  123402600      124720399     NR_125718      POT1-AS1
24   chr7  123402600      124720399     NR_125730        RNU6-2
25   chr7  123402600      124720399     NR_133947  LOC105375483
26   chr8  124917471      125058584  NM_001039112        FER1L6
27   chr8  124917471      125058584     NR_040044    FER1L6-AS1
28   chr8  124917471      125058584     NR_103547    FER1L6-AS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   78220201       79426281  NM_001009811        CEP131
1   chr17   78220201       79426281  NM_001037984      SLC38A10
2   chr17   78220201       79426281  NM_001080395          AATK
3   chr17   78220201       79426281  NM_001086521       NDUFAF8
4   chr17   78220201       79426281  NM_001164637         ENDOV
6   chr17   78220201       79426281  NM_001166349      SLC26A11
7   chr17   78220201       79426281  NM_001256071        RNF213
8   chr17   78220201       79426281  NM_001272086  LOC100130370
9   chr17   78220201       79426281  NM_001291324        BAHCC1
10  chr17   78220201       79426281     NM_002522         NPTX1
12  chr17   78220201       79426281     NM_006340        BAIAP2
14  chr17   78220201       79426281     NM_020761         RPTOR
16  chr17   78220201       79426281     NM_024591         CHMP6
18  chr17   78220201       79426281     NM_144679        TEPSIN
19  chr17   78220201       79426281     NM_178520       TMEM105
20  chr17   78220201       79426281     NR_026857    BAIAP2-AS1
21  chr17   78220201       79426281     NR_027255      AATK-AS1
22  chr17   78220201       79426281     NR_029376  LOC100294362
23  chr17   78220201       79426281     NR_029897        MIR338
24  chr17   78220201       79426281     NR_030394        MIR657
25  chr17   78220201       79426281     NR_031652       MIR1250
26  chr17   78220201       79426281     NR_036151       MIR3065
27  chr17   78220201       79426281     NR_036152       MIR3186
28  chr17   78220201       79426281     NR_038080     LINC00482
29  chr17   78220201       79426281     NR_039883       MIR4730
30  chr17   78220201       79426281     NR_039894       MIR4740
31  chr17   78220201       79426281     NR_110852  LOC101928855
32  chr17   78220201       79426281     NR_135654  LOC105371925
33   chr3  148127562      148530378     NM_009585         AGTR1,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr3    7006313        7226087  NM_181874      GRM7,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr9   39038660       39237423  NM_033655       CNTNAP3
1  chr9   41848918       42158553  NR_003670        FGF7P3
2  chr9   41848918       42158553  NR_015363         GLIDR
5  chr9   41848918       42158553  NR_126048  LOC102724238
6  chr9   41848918       42158553  NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67628242       68626616  NM_001127384    CTNNA3
2   chr7   64110736       64262263  NM_001160183    ZNF138
3   chr7   64110736       64262263  NM_001282360    ZNF107
6   chr7   64110736       64262263     NR_106898   MIR6839
7   chr7   69085693       69187813  NM_001127231     AUTS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   38163117       38645287  NM_001310135          TTC6
1   chr14   38163117       38645287     NR_135286     LINC00517
2   chr19     908763        1155426  NM_001039848          GPX4
3   chr19     908763        1155426  NM_001100122         SBNO2
4   chr19     908763        1155426  NM_001258328      ARHGAP45
7   chr19     908763        1155426  NM_001316323        POLR2E
10  chr19     908763        1155426     NM_005224        ARID3A
13  chr19     908763        1155426     NM_019112         ABCA7
14  chr19     908763        1155426     NM_024100         WDR18
15  chr19     908763        1155426     NM_032551        KISS1R
16  chr19     908763        1155426     NM_033420       TMEM259
17  chr19     908763        1155426     NM_138690        GRIN3B
18  chr19     908763        1155426     NM_138774        R3HDM4
19  chr19     908763        1155426     NM_201277          CNN2
20  chr19     908763        1155426     NR_125730        RNU6-2
21   chr2   50777896       51051618  NM_001330082         NRXN1
22   chr2   50777896       51051618     NR_130470       MIR8485
23   chr2   95455005       95568180     NM_144705         TEKT4
24   chr2   95455005       95568180     NR_003366    ANKRD20A8P
25   chr2   95455005       95568180     NR_037597     LOC442028
26   chr3   17297736       18135829  NM_001134381        TBC1D5
27   chr3   17297736       18135829  NM_001257177     LOC339862
29   chr3   17297736       18135829     NR_135536  LOC105376975
30   chr5     155930         378729  NM_001080478       LRRC14B
31   chr5     155930         378729  NM_001242412          AHRR
32   chr5     155930         378729     NM_004168          SDHA
33   chr5     155930         378729     NM_013232         PDCD6
34   chr5     155930         378729     NM_052909      PLEKHG4B
35   chr5     155930         378729     NM_145265       CCDC127
37   chr5     155930         378729     NR_104613         HRAT5,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr21   13435574       14785932  NR_026916    ANKRD30BP2
1  chr21   13435574       14785932  NR_036164     MIR3156-3
2   chr3  117747185      118275208  NR_135547  LOC105374060,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67658290       67828646  NM_001127384        CTNNA3
2   chr20   14843800       15076999     NM_080676       MACROD2
3   chr20   14843800       15076999     NR_037841   MACROD2-AS1
5    chr7     115153         311208     NM_020223        FAM20C
6    chr7     115153         311208     NR_108065  LOC100507642
7    chr7     115153         311208     NR_134324  LOC105375115
8    chr7     115153         311208     NR_134325  LOC102723672
9    chr7   75724130       76012839  NM_001110199         SRRM3
10   chr7   75724130       76012839     NM_001540         HSPB1
11   chr7   75724130       76012839     NM_012479         YWHAG
12   chr7   75724130       76012839     NR_135079       GTF2IP7
13   chr8  100537831      100662660     NM_017890        VPS13B
14   chr8  100537831      100662660     NR_030329        MIR599
15   chr8  100537831      100662660     NR_030596        MIR875,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  241482148      241590804  NM_001282773      RGS7
1  chr17   14023311       14329205  NM_001007530    CDRT15
2  chr17   14023311       14329205     NM_001303     COX10
3  chr17   14023311       14329205     NM_006041  HS3ST3B1
4  chr17   14023311       14329205     NR_026880  MGC12916
5  chr21   22308774       22435458     NM_004540     NCAM2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  237462754      237575544     NM_001035       RYR2
1   chr10  128359827      129752175  NM_001030013        NPS
2   chr10  128359827      129752175  NM_001039762    FAM196A
3   chr10  128359827      129752175  NM_001290223      DOCK1
4   chr10  128359827      129752175  NM_001323355      PTPRE
5   chr10  128359827      129752175     NM_152311      CLRN3
6   chr10  128359827      129752175     NM_207426      FOXI2
7   chr19   21896625       22064011  NM_001256650      ZNF43
9   chr19   21896625       22064011     NM_173531     ZNF100
10  chr19   21896625       22064011     NR_024523  LOC641367
11  chr19   34627470       34821365     NM_014686   KIAA0355
12  chr19   34627470       34821365     NM_015578     LSM14A
13   chr3    1443112        1555129  NM_001289081      CNTN6
14   chr3  189534824      190248129  NM_001114979       TP63
16   chr3  189534824      190248129  NM_001134418       P3H2
17   chr3  189534824      190248129  NM_001167928     IL1RAP
23   chr3  189534824      190248129     NM_006580     CLDN16
25   chr3  189534824      190248129     NM_021101      CLDN1
26   chr3  189534824      190248129     NM_207316    TMEM207
27   chr3  189534824      190248129     NR_030642     MIR944
28   chr3  189534824      190248129     NR_126419   P3H2-AS1
29   chr4   94103412       94210345     NM_001510      GRID2
30   chr4  182066750      182254967     NR_033918  LINC00290
31   chr7   21370016       21655149  NM_001277115     DNAH11
32   chr7   21370016       21655149  NM_001326542        SP4
33   chr7   21370016       21655149     NR_031594    MIR1183,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67586025       67699748  NM_001127384        CTNNA3
2   chr19   20209951       20644235     NM_007138         ZNF90
3   chr19   20209951       20644235     NM_052852        ZNF486
4   chr19   20209951       20644235     NR_036053       MIR1270
6   chr19   20209951       20644235     NR_036455       ZNF826P
7    chr7   75810384       76021281  NM_001110199         SRRM3
8    chr7   75810384       76021281     NM_001540         HSPB1
9    chr7   75810384       76021281     NM_012479         YWHAG
10   chr7   75810384       76021281     NM_080744         SSC4D
11   chr9   41935865       42581167  NM_001012419     ANKRD20A3
12   chr9   41935865       42581167  NM_001012421     ANKRD20A2
13   chr9   41935865       42581167     NR_003670        FGF7P3
14   chr9   41935865       42581167     NR_015363         GLIDR
15   chr9   41935865       42581167     NR_121572      GXYLT1P3
18   chr9   41935865       42581167     NR_126048  LOC102724238
19   chr9   41935865       42581167     NR_126049     LOC554249
20   chr9   41935865       42581167     NR_136310  LOC105379252,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3  105519301      105628987  NM_001321786      CBLB,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   97764101       97997475     NR_120324  LOC101927286
1   chr7   88927775       89094031     NM_181646       ZNF804B
2   chr9   28595468       28709843  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145102719      145205300  NM_001277444         NBPF9
1    chr1  145102719      145205300  NM_001278267        NBPF20
2    chr1  145102719      145205300     NM_004892        SEC22B
3   chr11   84032402       84252347  NM_001142699          DLG2
5   chr16    8654574        9324104     NM_000303          PMM2
6   chr16    8654574        9324104     NM_000663          ABAT
7   chr16    8654574        9324104  NM_001042476       CARHSP1
13  chr16    8654574        9324104  NM_001286457          USP7
16  chr16    8654574        9324104     NM_014117      C16orf72
18  chr16    8654574        9324104     NM_015421       TMEM186
20  chr16    8654574        9324104     NM_024109       METTL22
22   chr7     141076         324737     NM_020223        FAM20C
23   chr7     141076         324737     NR_108065  LOC100507642
24   chr7     141076         324737     NR_134324  LOC105375115
25   chr7     141076         324737     NR_134325  LOC102723672
26   chr7   11790976       12391179  NM_001134232      TMEM106B
27   chr7   11790976       12391179  NM_001135924          VWDE
28   chr7   11790976       12391179     NM_015204        THSD7A, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   47835693       48061441  NM_001113498     MDGA2
1  chr15   52711359       52972604  NM_001142495     MYO5A
2  chr15   52711359       52972604  NM_001286495   FAM214A
3  chr15   52711359       52972604  NM_001306191    ARPP19,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   12777678       12893086  NM_001080830      PRAMEF12
1   chr1   12777678       12893086  NM_001103170       AADACL3
2   chr1   12777678       12893086  NM_001146344      PRAMEF11
3   chr1   12777678       12893086  NM_001294139       PRAMEF1
5   chr1   12777678       12893086     NM_152290      C1orf158
6   chr7   64065311       64167910  NM_001282360        ZNF107
7   chr7   64065311       64167910     NR_077227  LOC100128885
9   chr7   64065311       64167910     NR_106898       MIR6839
10  chr9   41902359       42748289  NM_001012419     ANKRD20A3
11  chr9   41902359       42748289  NM_001012421     ANKRD20A2
12  chr9   41902359       42748289     NM_199244       FOXD4L4
13  chr9   41902359       42748289     NR_003670        FGF7P3
14  chr9   41902359       42748289     NR_015363         GLIDR
15  chr9   41902359       42748289     NR_121572      GXYLT1P3
18  chr9   41902359       42748289     NR_126048  LOC102724238
19  chr9   41902359       42748289     NR_126049     LOC554249
20  chr9   41902359       42748289     NR_136310  LOC105379252,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   28197672       28322137  NM_000275      OCA2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   16398745       16706616  NM_001001395      LMO3
1  chr12   16398745       16706616  NM_001170798   SLC15A5
6  chr12   16398745       16706616  NM_001267598     MGST1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  193273075      193471082     NR_125789     LINC01031
1  chr11    4177568        4419618  NM_001005161        OR52B4
2  chr11    4177568        4419618     NM_003141        TRIM21
3  chr11    4177568        4419618     NR_047550  LOC100506082
4   chr2  210261758      210408123  NM_001039538          MAP2
5  chr20   14689752       14833220     NM_080676       MACROD2
6   chr7  110390875      110542464  NM_001244606        IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr9   39123995       39589931  NM_001085452  SPATA31A1
1  chr9   39123995       39589931     NM_033655    CNTNAP3
2  chr9   39123995       39589931     NR_003528    ZNF658B
3  chr9   39123995       39589931     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   19598325       19727895  NM_001142308    MALRD1
1   chr14   47761571       48075682  NM_001113498     MDGA2
4   chr16    6686822        6825983  NM_001142334    RBFOX1
7   chr19   47860134       47976229  NM_001009813     MEIS3
10  chr19   47860134       47976229     NM_014681     DHX34
11  chr19   47860134       47976229     NM_015063    SLC8A2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr13   54794702       54996518     NR_031628   MIR1297
1  chr15   28539429       28648753     NM_004667     HERC2
2  chr15   28539429       28648753     NR_033351   GOLGA8F
3  chr15   28539429       28648753     NR_033353   GOLGA8G
4   chr7   69103647       69351310  NM_001127231     AUTS2,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr12   72567567       73078117  NM_013381      TRHDE
1  chr12   72567567       73078117  NR_026836  TRHDE-AS1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2  133537135      134271097     NM_207363        NCKAP5
1  chr2  133537135      134271097     NR_110294  LOC101928161
2  chr2  133537135      134271097     NR_135572  LOC101928185
3  chr3   24581844       25223886  NM_001290216          RARB
4  chr8   19737245       19849600     NM_000237           LPL,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   67960127       68071789  NM_001127384        CTNNA3
2   chr2  186014597      186209507     NR_136319  LOC105373782,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89058660       90905054  NM_001105522      TRIM49D2
2   chr11   89058660       90905054  NM_001136486        TRIM64
3   chr11   89058660       90905054  NM_001143837          NOX4
4   chr11   89058660       90905054  NM_001143975        UBTFL1
5   chr11   89058660       90905054  NM_001144073       CHORDC1
6   chr11   89058660       90905054  NM_001164397       TRIM64B
7   chr11   89058660       90905054  NM_001195234       TRIM49C
8   chr11   89058660       90905054  NM_001206627      TRIM49D1
10  chr11   89058660       90905054  NM_001271942        TRIM77
15  chr11   89058660       90905054     NM_005467       NAALAD2
16  chr11   89058660       90905054     NM_020358        TRIM49
17  chr11   89058660       90905054     NM_153696        FOLH1B
18  chr11   89058660       90905054     NR_028346      TRIM53AP
20  chr11   89058660       90905054     NR_031663       MIR1261
21  chr11   89058660       90905054     NR_039711       MIR4490
22  chr11   89058660       90905054     NR_104190      DISC1FP1
24  chr16   12356701       12501924     NM_032167         SNX29
25  chr18   67094943       67362012     NM_152721          DOK6
26  chr18   67094943       67362012     NR_134579  LOC105372179,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12808973       13154642  NM_001009611    PRAMEF4
1    chr1   12808973       13154642  NM_001010889    PRAMEF6
2    chr1   12808973       13154642  NM_001010890    PRAMEF9
3    chr1   12808973       13154642  NM_001012276    PRAMEF8
4    chr1   12808973       13154642  NM_001013407    PRAMEF5
5    chr1   12808973       13154642  NM_001013631   HNRNPCL1
6    chr1   12808973       13154642  NM_001080830   PRAMEF12
7    chr1   12808973       13154642  NM_001099850   PRAMEF18
8    chr1   12808973       13154642  NM_001100631   PRAMEF22
9    chr1   12808973       13154642  NM_001146181   HNRNPCL3
10   chr1   12808973       13154642  NM_001146344   PRAMEF11
11   chr1   12808973       13154642  NM_001294139    PRAMEF1
12   chr1   12808973       13154642  NM_001302551   HNRNPCL4
13   chr1   12808973       13154642  NM_001306072   PRAMEF26
14   chr1   12808973       13154642  NM_001310134   PRAMEF25
16   chr1   12808973       13154642     NM_023014    PRAMEF2
17   chr1   12808973       13154642     NM_152290   C1orf158
18  chr12   72582292       72747696     NM_013381      TRHDE
19  chr12   72582292       72747696     NR_026836  TRHDE-AS1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11  122021539      122234490     NR_024430       MIR100HG
1   chr11  122021539      122234490     NR_029515         MIR100
8   chr13   54747811       55131337     NR_031628        MIR1297
9   chr19    9420260        9924245  NM_001077624         ZNF846
10  chr19    9420260        9924245  NM_001130031         ZNF562
11  chr19    9420260        9924245  NM_001172650  ZNF559-ZNF177
12  chr19    9420260        9924245  NM_001172651         ZNF177
13  chr19    9420260        9924245  NM_001202406         ZNF559
16  chr19    9420260        9924245  NM_001271314         ZNF266
17  chr19    9420260        9924245  NM_001300883         ZNF426
18  chr19    9420260        9924245  NM_001308269         ZNF121
19  chr19    9420260        9924245  NM_001316936         FBXL12
20  chr19    9420260        9924245  NM_001330365         ZNF561
23  chr19    9420260        9924245     NM_152476         ZNF560
24  chr19    9420260        9924245     NM_198535         ZNF699
25  chr19    9420260        9924245     NR_122038     ZNF561-AS1
26  chr19    9420260        9924245     NR_134920   LOC101928238
27  chr20    5192134        5297728     NM_144773         PROKR2
28   chr7  110627893      110729981  NM_001244606         IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    6678771        7184355  NM_001004460     OR10A2
1   chr11    6678771        7184355  NM_001004489     OR2AG1
2   chr11    6678771        7184355  NM_001004490     OR2AG2
3   chr11    6678771        7184355  NM_001004684      OR2D3
4   chr11    6678771        7184355     NM_003696      OR6A2
5   chr11    6678771        7184355     NM_003700      OR2D2
6   chr11    6678771        7184355     NM_013249     ZNF214
7   chr11    6678771        7184355     NM_013250     ZNF215
8   chr11    6678771        7184355     NM_014469     RBMXL2
9   chr11    6678771        7184355     NM_022061     MRPL17
10  chr11    6678771        7184355     NM_176822     NLRP14
11  chr11    6678771        7184355     NM_178168     OR10A5
12  chr11    6678771        7184355     NM_207186     OR10A4
13  chr11    6678771        7184355     NR_003945     GVINP1
14  chr15   28627500       28874163     NR_033351    GOLGA8F
16  chr15   28627500       28874163     NR_033353    GOLGA8G
18  chr15   28627500       28874163     NR_039734  MIR4509-3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  243545566      243773989  NM_001206729      AKT3
2    chr1  243545566      243773989     NM_006642   SDCCAG8
4   chr16   83965318       84158771  NM_001080442   SLC38A8
5   chr16   83965318       84158771  NM_001146051     HSDL1
6   chr16   83965318       84158771     NM_003791    MBTPS1
7   chr16   83965318       84158771     NM_019065    NECAB2
8   chr16   83965318       84158771     NM_182981    OSGIN1
9    chr7  110671704      110824634  NM_001099658     LRRN3
10   chr7  110671704      110824634  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   28762514       28894460     NR_033351    GOLGA8F
1  chr15   28762514       28894460     NR_033353    GOLGA8G
2   chr4   66445654       66589787  NM_001281766      EPHA5
5   chr4   66445654       66589787     NR_034138  EPHA5-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11     654681         956252     NM_001004         RPLP2
1   chr11     654681         956252  NM_001025234        TSPAN4
4   chr11     654681         956252  NM_001039490         CD151
5   chr11     654681         956252  NM_001042463        TMEM80
6   chr11     654681         956252  NM_001142675         CHID1
7   chr11     654681         956252  NM_001191060      SLC25A22
10  chr11     654681         956252  NM_001286606       CRACR2B
11  chr11     654681         956252  NM_001293167         PANO1
12  chr11     654681         956252  NM_001318824         PDDC1
14  chr11     654681         956252     NM_006755        TALDO1
15  chr11     654681         956252     NM_012305         AP2A2
16  chr11     654681         956252     NM_016564         CEND1
17  chr11     654681         956252     NM_020376        PNPLA2
18  chr11     654681         956252     NM_021008         DEAF1
19  chr11     654681         956252     NM_021128        POLR2L
20  chr11     654681         956252     NM_022772        EPS8L2
23  chr11     654681         956252     NM_145886         PIDD1
24  chr11     654681         956252     NR_002585       SNORA52
25  chr11     654681         956252     NR_126342     LOC171391
26  chr16   10539839       10642066  NM_001256160       ATF7IP2
27  chr16   10539839       10642066     NM_001424          EMP2
29  chr16   21558176       21730916  NM_001077180        METTL9
30  chr16   21558176       21730916  NM_001161683          OTOA
32  chr16   21558176       21730916     NM_005849         IGSF6
35  chr16   21558176       21730916     NR_110930  LOC101927814
36  chr17   78211356       78522505  NM_001164637         ENDOV
38  chr17   78211356       78522505  NM_001166349      SLC26A11
39  chr17   78211356       78522505  NM_001256071        RNF213
40  chr17   78211356       78522505     NM_002522         NPTX1
41  chr17   78211356       78522505     NM_020761         RPTOR
43  chr17   78211356       78522505     NR_029376  LOC100294362
44  chr17   78211356       78522505     NR_039883       MIR4730
45   chr2  153100585      153223954     NM_052905         FMNL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143541064      143848935  NM_001123068       PPIAL4G
1    chr1  143541064      143848935     NR_104014     LINC01138
2    chr1  143541064      143848935     NR_106967       MIR6077
3    chr1  143541064      143848935     NR_111930  LOC100132057
4    chr1  145296445      145545062  NM_001039888      ANKRD34A
5    chr1  145296445      145545062  NM_001184795        PEX11B
6    chr1  145296445      145545062  NM_001277444         NBPF9
7    chr1  145296445      145545062  NM_001278267        NBPF20
8    chr1  145296445      145545062  NM_001302371        NBPF10
9    chr1  145296445      145545062  NM_001303040        ITGA10
10   chr1  145296445      145545062  NM_001313972         TXNIP
12   chr1  145296445      145545062     NM_005105         RBM8A
14   chr1  145296445      145545062     NM_032305       POLR3GL
15   chr1  145296445      145545062     NM_145277          HFE2
16   chr1  145296445      145545062     NM_153713         LIX1L
17   chr1  145296445      145545062     NR_002328        GNRHR2
21   chr1  145296445      145545062     NR_104217       NBPF25P
22   chr1  145296445      145545062     NR_125967  LOC101928979
23  chr10   67865563       68112454  NM_001127384        CTNNA3
25  chr13   63122177       63317087     NR_047029     LINC00448
26   chr6  116511845      117146567  NM_001010892        RSPH4A
27   chr6  116511845      117146567  NM_001085480       FAM162B
28   chr6  116511845      117146567  NM_001139444      TRAPPC3L
29   chr6  116511845      117146567  NM_001276460        FAM26F
30   chr6  116511845      117146567  NM_001286355        GPRC6A
31   chr6  116511845      117146567  NM_001322939           DSE
34   chr6  116511845      117146567     NM_002269         KPNA5
35   chr6  116511845      117146567     NM_003309        TSPYL1
36   chr6  116511845      117146567     NM_015952         RWDD1
37   chr6  116511845      117146567     NM_021648        TSPYL4
38   chr6  116511845      117146567     NM_145062         ZUFSP
39   chr6  116511845      117146567     NM_152729        NT5DC1
40   chr6  116511845      117146567     NM_153036        FAM26D
41   chr6  116511845      117146567     NM_153711        FAM26E
45   chr7   69021326       69125019  NM_001127231         AUTS2
47   chr7   69021326       69125019     NR_108105  LOC100507468
48   chr7  110610895      111012093  NM_001099658         LRRN3
49   chr7  110610895      111012093  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63167118       63287568     NR_047029  LINC00448
1    chr3   37848324       38222027  NM_001172567      MYD88
2    chr3   37848324       38222027     NM_002207      ITGA9
3    chr3   37848324       38222027     NM_005109      OXSR1
4    chr3   37848324       38222027     NM_005808     CTDSPL
5    chr3   37848324       38222027     NM_006225      PLCD1
6    chr3   37848324       38222027     NM_007337      DLEC1
7    chr3   37848324       38222027     NM_015873       VILL
8    chr3   37848324       38222027     NR_024024      ACAA1
10   chr3   37848324       38222027     NR_029499    MIR26A1
11   chr3   37848324       38222027     NR_110531  ITGA9-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145346062      145533435  NM_001039888      ANKRD34A
1    chr1  145346062      145533435  NM_001184795        PEX11B
2    chr1  145346062      145533435  NM_001277444         NBPF9
3    chr1  145346062      145533435  NM_001278267        NBPF20
4    chr1  145346062      145533435  NM_001302371        NBPF10
5    chr1  145346062      145533435  NM_001303040        ITGA10
6    chr1  145346062      145533435  NM_001313972         TXNIP
8    chr1  145346062      145533435     NM_005105         RBM8A
10   chr1  145346062      145533435     NM_032305       POLR3GL
11   chr1  145346062      145533435     NM_145277          HFE2
12   chr1  145346062      145533435     NM_153713         LIX1L
13   chr1  145346062      145533435     NR_002328        GNRHR2
17   chr1  145346062      145533435     NR_104217       NBPF25P
18   chr1  145346062      145533435     NR_125967  LOC101928979
19  chr15   78342931       78640278  NM_001101404         SH2D7
20  chr15   78342931       78640278  NM_001130182        DNAJA4
22  chr15   78342931       78640278  NM_001199377        ACSBG1
23  chr15   78342931       78640278  NM_001301224          CIB2
24  chr15   78342931       78640278  NM_001303247         WDR61
25  chr15   78342931       78640278     NM_004378        CRABP1
26  chr15   78342931       78640278     NM_005530         IDH3A
27  chr15   78342931       78640278     NM_015079       TBC1D2B
29  chr20    8056505        8262825     NM_015192         PLCB1
30  chr20    8056505        8262825     NR_046809     PLCB1-IT1
31  chr20   14522732       14880486     NM_080676       MACROD2
32  chr20   14522732       14880486     NR_037841   MACROD2-AS1
33  chr20   14522732       14880486     NR_104193   MACROD2-IT1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  162802583      163018847     NM_178550   CCDC190
1  chr15   30293229       30417175  NM_001282472   GOLGA8J
2  chr15   30293229       30417175     NR_026859    ULK4P3
3  chr16    8602222        8706517  NM_001146336   TMEM114
5   chr6  129285600      129476145  NM_001079823     LAMA2,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr9   88385266       88556581  NM_001321881      NAA35
3  chr9   88385266       88556581     NR_029410  LOC389765,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    4238096        4619197  NM_001004137     OR52M1
1   chr11    4238096        4619197  NM_001005161     OR52B4
2   chr11    4238096        4619197  NM_001005169     OR52I1
3   chr11    4238096        4619197  NM_001005170     OR52I2
4   chr11    4238096        4619197  NM_001005171     OR52K1
5   chr11    4238096        4619197  NM_001005172     OR52K2
6   chr11    4238096        4619197     NM_003141     TRIM21
7   chr11    4238096        4619197     NM_144663   C11orf40
8   chr12   72670202       72919813     NM_013381      TRHDE
9   chr13   54410075       54975948     NR_031628    MIR1297
10  chr13   54410075       54975948     NR_047488  LINC00558
11  chr13   54410075       54975948     NR_108062  LINC00458
13   chr2   49125343       49367743     NM_181446       FSHR
14   chr2   49125343       49367743     NR_107011   MIR548BA
15   chr6   20971127       21095513     NM_017774     CDKAL1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28157387       28489410     NM_000275          OCA2
2   chr15   28157387       28489410     NM_004667         HERC2
3   chr16    8600042        8768331  NM_001146336       TMEM114
5   chr16    8600042        8768331     NM_024109       METTL22
7    chr4   69320898       69604520     NM_001076       UGT2B15
8    chr4   69320898       69604520     NM_001077       UGT2B17
9    chr4   69320898       69604520     NM_014058     TMPRSS11E
10   chr6  120247501      120493947     NR_036098       MIR3144
11   chr9   41909618       42097694     NR_003670        FGF7P3
12   chr9   41909618       42097694     NR_015363         GLIDR
15   chr9   41909618       42097694     NR_126048  LOC102724238
16   chr9   41909618       42097694     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr18   40178725       40324020     NM_002930       RIT2
1   chr18   40178725       40324020     NR_046174  LINC00907
2    chr5   66195466       66774140  NM_001164664      MAST4
6    chr5   66195466       66774140     NM_005582      CD180
8    chr5   66195466       66774140     NR_111908  MAST4-AS1
9    chr9   30340404       31788180     NR_046204  LINC01242
10   chr9   30340404       31788180     NR_135134  LINC01243,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    6706917        6818579  NM_001004489     OR2AG1
1   chr11    6706917        6818579  NM_001004490     OR2AG2
2   chr11    6706917        6818579     NM_003696      OR6A2
3   chr11    6706917        6818579     NR_003945     GVINP1
4   chr18     796212         952867  NM_001099733    ADCYAP1
6   chr18     796212         952867     NM_005433       YES1
7    chr5     166279         472406  NM_001080478    LRRC14B
8    chr5     166279         472406  NM_001242412       AHRR
9    chr5     166279         472406  NM_001284351     SLC9A3
10   chr5     166279         472406     NM_004168       SDHA
11   chr5     166279         472406     NM_007277      EXOC3
12   chr5     166279         472406     NM_013232      PDCD6
13   chr5     166279         472406     NM_052909   PLEKHG4B
14   chr5     166279         472406     NM_145265    CCDC127
15   chr5     166279         472406     NR_024158     PP7080
17   chr5     166279         472406     NR_104613      HRAT5
18   chr5     166279         472406     NR_126522  EXOC3-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   26967022       28343419     NM_002515         NOVA1
2   chr14   26967022       28343419     NR_036193       MIR4307
3   chr14   26967022       28343419     NR_039992     LINC00645
4   chr14   26967022       28343419     NR_110033  LOC101927062
5   chr14   26967022       28343419     NR_110041     MIR4307HG
6   chr14   26967022       28343419     NR_110556  LOC102724890
7   chr14   26967022       28343419     NR_130461       MIR3171
8    chr2   51714581       51867518     NR_135237     LOC730100
9    chr2   97300368       97409359  NM_001115016        KANSL3
10   chr2   97300368       97409359  NM_001293083        FER1L5
11   chr2   97300368       97409359  NM_001322354        LMAN2L
14   chr8    3688966        3887620     NM_033225         CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   48903667       49401523  NM_001286238        SPATA6
1    chr1   48903667       49401523  NM_001302082         BEND5
2    chr1   48903667       49401523  NM_001323575         AGBL4
3    chr1  187121358      187290385     NR_126347     LINC01036
4   chr11   48288526       48388662  NM_001004702         OR4C3
5   chr11   48288526       48388662  NM_001004725         OR4S1
6   chr11   48288526       48388662  NM_001005513        OR4C45
7   chr15   20948205       21074770  NM_001277303        POTEB2
8   chr15   20948205       21074770     NM_207355        POTEB3
9   chr15   20948205       21074770     NR_027992        NBEAP1
10  chr15   20948205       21074770     NR_036062     MIR3118-2
12  chr16   22190560       22425620  NM_001258033        POLR3E
13  chr16   22190560       22425620     NM_001802          CDR2
14  chr16   22190560       22425620     NM_013302         EEF2K
15  chr16   22190560       22425620     NR_136333       MFSD13B
16   chr2   97146991       97272536  NM_001115016        KANSL3
17   chr2   97146991       97272536  NM_001285485        NEURL3
18   chr2   97146991       97272536  NM_001319085        ARID5A
22   chr2   97146991       97272536     NR_135564  LOC105373496
23   chr3  146602810      146754193     NR_135560  LOC101927866,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  242437950      242583380  NM_001164356         THAP4
1   chr2  242437950      242583380  NM_001271978         STK25
5   chr2  242437950      242583380     NM_032515           BOK
6   chr2  242437950      242583380     NM_178326         ATG4B
7   chr2  242437950      242583380     NR_033346       BOK-AS1
8   chr9   41896621       42040505     NR_003670        FGF7P3
9   chr9   41896621       42040505     NR_015363         GLIDR
12  chr9   41896621       42040505     NR_126048  LOC102724238
13  chr9   41896621       42040505     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   68041427       68172397  NM_001127384    CTNNA3
2  chr11   21348250       21543548  NM_001288713     NELL1
3  chr16   68590706       68773895  NM_001305204     ZFP90
5  chr16   68590706       68773895  NM_001317184      CDH1
6  chr16   68590706       68773895  NM_001317195      CDH3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  224751638      224955836  NM_001322302         CNIH3
4   chr10   37356650       37567739     NM_052997      ANKRD30A
5   chr15   28481652       28586268     NM_004667         HERC2
6    chr2    1143186        1250601     NM_018968         SNTG2
7    chr2   97191467       97334934  NM_001115016        KANSL3
8    chr2   97191467       97334934  NM_001293083        FER1L5
9    chr2   97191467       97334934  NM_001319085        ARID5A
12   chr2   97191467       97334934     NR_135564  LOC105373496
13  chr22   19916687       20058123     NM_000754          COMT
16  chr22   19916687       20058123  NM_001282512        TXNRD2
17  chr22   19916687       20058123  NM_001283116        TANGO2
20  chr22   19916687       20058123     NM_001670         ARVCF
23  chr22   19916687       20058123     NR_029706        MIR185
24  chr22   19916687       20058123     NR_039918       MIR4761
25   chr4   71400215       71591494  NM_001037442         RUFY3
28   chr4   71400215       71591494     NM_016519          AMBN
29   chr4   71400215       71591494     NM_020368          UTP3
30   chr4   71400215       71591494     NM_031889          ENAM
31   chr4   71400215       71591494     NM_144646        JCHAIN,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   67266972       67792701     NM_000695    ALDH3B2
1   chr11   67266972       67792701     NM_000852      GSTP1
3   chr11   67266972       67792701  NM_001161473    ALDH3B1
4   chr11   67266972       67792701  NM_001166102     NDUFV1
5   chr11   67266972       67792701  NM_001243750      NUDT8
7   chr11   67266972       67792701  NM_001318496      CABP2
8   chr11   67266972       67792701     NM_004910    PITPNM1
9   chr11   67266972       67792701     NM_005851    CDK2AP2
10  chr11   67266972       67792701     NM_005995      TBX10
11  chr11   67266972       67792701     NM_030930    UNC93B1
12  chr11   67266972       67792701     NM_080658       ACY3
14  chr11   67266972       67792701     NR_024249   FAM86C2P
15  chr11   67266972       67792701     NR_033791     DOC2GP
17  chr11   67266972       67792701     NR_130935   C11orf72
18  chr16   68615794       68804925  NM_001317184       CDH1
19  chr16   68615794       68804925  NM_001317195       CDH3
20  chr16   68615794       68804925     NR_106988  MIR7641-2
21   chr2   52039044       52185979     NR_135237  LOC730100
22   chr7  110626320      110770322  NM_001099658      LRRN3
23   chr7  110626320      110770322  NM_001244606     IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12   72545714       72672301     NM_013381         TRHDE
1  chr12   72545714       72672301     NR_026836     TRHDE-AS1
3   chr4  125355369      125488563     NR_110838  LOC101927087
4   chr7  110631248      110892407  NM_001099658         LRRN3
5   chr7  110631248      110892407  NM_001244606        IMMP2L
7   chr7  110686885      110823220  NM_001099658         LRRN3
8   chr7  110686885      110823220  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr12   80931686       81054947  NM_001145026      PTPRQ
1  chr20   14682041       14826714     NM_080676    MACROD2
2   chr5   17726601       18000323     NR_134286  LOC646241
4   chr5   20367638       21245093  NM_001291956      CDH18,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143103353      143293991     NR_110761  LOC102723769
1   chr15   77694843       77965078  NM_001301186        LINGO1
10  chr15   77694843       77965078  NM_001304505        HMG20A
11  chr15   77694843       77965078     NM_024776         PEAK1
13  chr15   77694843       77965078     NR_045123    LINGO1-AS1
14  chr15   77694843       77965078     NR_120361    LINGO1-AS2
15  chr15   77694843       77965078     NR_135692  LOC101929457
16   chr2   25028347       25159157  NM_001320613         ADCY3
17   chr2   25028347       25159157  NM_001322101         CENPO,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11    1078571        1359440  NM_001304359      MUC5AC
1   chr11    1078571        1359440  NM_001318512      TOLLIP
3   chr11    1078571        1359440     NM_002457        MUC2
4   chr11    1078571        1359440     NM_002458       MUC5B
5   chr11    1078571        1359440     NR_029409  TOLLIP-AS1
6   chr11    1078571        1359440     NR_106802     MIR6744
7   chr14   42205080       42463264  NM_001346175       LRFN5
8   chr19   10296519       10398852     NM_000201       ICAM1
9   chr19   10296519       10398852  NM_001318730       DNMT1
11  chr19   10296519       10398852     NM_001544       ICAM4
12  chr19   10296519       10398852     NM_004230       S1PR2
13  chr19   10296519       10398852     NM_015956       MRPL4
15  chr19   10296519       10398852     NR_036206     MIR4322,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82220437       82346635  NM_001297704        ADGRL2
2    chr1  245057644      245247748  NM_001143943        EFCAB2
5    chr1  245057644      245247748     NR_111907  LOC101928068
6   chr10   67920112       68030086  NM_001127384        CTNNA3
8    chr7   64086084       64418436  NM_001160183        ZNF138
9    chr7   64086084       64418436  NM_001282360        ZNF107
10   chr7   64086084       64418436     NM_021148        ZNF273
13   chr7   64086084       64418436     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr19   23888696       24152385  NM_001244038     ZNF726
1   chr19   23888696       24152385     NM_138286     ZNF681
2   chr19   23888696       24152385     NR_003662    RPSAP58
3    chr2   26635525       27498182     NM_000221        KHK
4    chr2   26635525       27498182  NM_001029881       CIB4
5    chr2   26635525       27498182  NM_001035507      AGBL5
6    chr2   26635525       27498182  NM_001042426      CENPA
7    chr2   26635525       27498182  NM_001083590    TMEM214
8    chr2   26635525       27498182  NM_001105519    C2orf70
9    chr2   26635525       27498182  NM_001134693       OST4
10   chr2   26635525       27498182  NM_001166239     CGREF1
12   chr2   26635525       27498182  NM_001253723     DPYSL5
14   chr2   26635525       27498182  NM_001303050     MAPRE3
15   chr2   26635525       27498182  NM_001306079        CAD
16   chr2   26635525       27498182  NM_001318949    SLC30A3
18   chr2   26635525       27498182  NM_001330484       PREB
20   chr2   26635525       27498182     NM_002246      KCNK3
22   chr2   26635525       27498182     NM_004802       OTOF
24   chr2   26635525       27498182     NM_007046    EMILIN1
26   chr2   26635525       27498182     NM_016085     ATRAID
27   chr2   26635525       27498182     NM_017877    SLC35F6
29   chr2   26635525       27498182     NM_021095     SLC5A6
30   chr2   26635525       27498182     NM_032604      ABHD1
32   chr2   26635525       27498182     NM_145038       DRC1
33   chr2   26635525       27498182     NM_175769      TCF23
34   chr2   26635525       27498182     NM_178553      PRR30
36   chr2   26635525       27498182     NR_046730  AGBL5-AS1
39   chr2   51950290       52189352     NR_135237  LOC730100
40   chr7   64099924       65152202  NM_001007253     ERV3-1
41   chr7   64099924       65152202  NM_001160183     ZNF138
42   chr7   64099924       65152202  NM_001282360     ZNF107
43   chr7   64099924       65152202  NM_001287532      ZNF92
44   chr7   64099924       65152202     NM_015852     ZNF117
45   chr7   64099924       65152202     NM_021148     ZNF273
46   chr7   64099924       65152202     NR_027392    INTS4P2
47   chr7   64099924       65152202     NR_033416     CCT6P3
48   chr7   64099924       65152202     NR_038378  LOC441242
51   chr7   64099924       65152202     NR_106898    MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12     991789        1349083  NM_001297419         RAD52
4   chr12     991789        1349083  NM_001301248          ERC1
5   chr12     991789        1349083     NM_018979          WNK1
7   chr13   88004518       88736175     NM_015567       SLITRK5
8   chr13   88004518       88736175     NR_033829     MIR4500HG
9   chr13   88004518       88736175     NR_039722       MIR4500
10  chr13   88004518       88736175     NR_104059     LINC00397
11  chr17   14065776       14470568  NM_001007530        CDRT15
12  chr17   14065776       14470568     NM_001303         COX10
13  chr17   14065776       14470568     NM_006041      HS3ST3B1
14  chr17   14065776       14470568     NR_026880      MGC12916
15   chr7   68546603       69724024  NM_001127231         AUTS2
17   chr7   68546603       69724024     NR_108105  LOC100507468,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr1  100021953      100144126  NM_017734     PALMD,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   19109413       19731870  NM_001142308     MALRD1
1   chr15   21028614       21185885  NM_001277303     POTEB2
2   chr15   21028614       21185885     NM_207355     POTEB3
3   chr15   21028614       21185885     NR_028506      NF1P2
4   chr15   21028614       21185885     NR_036062  MIR3118-2
5   chr15   21028614       21185885     NR_040094  LINC01193
6   chr15   21028614       21185885     NR_049895  MIR5701-2
8    chr2  110184865      110315624  NM_001099289     SH3RF3
9    chr2  110184865      110315624  NM_001321504     SEPT10
11   chr4  121669616      121982980     NM_018699      PRDM5
12   chr4  121669616      121982980     NM_024574       NDNF,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81525173       81715325     NM_003019         SFTPD
1   chr10   81525173       81715325     NR_002724         MBL1P
2   chr10   81525173       81715325     NR_029407     LOC642361
3   chr10   81525173       81715325     NR_033857       BMS1P21
4   chr10   81525173       81715325     NR_120611    NUTM2B-AS1
7   chr13   95327702       95633311     NM_007084         SOX21
8   chr13   95327702       95633311     NR_046514     SOX21-AS1
9   chr13   95327702       95633311     NR_047487     LINC00557
10  chr13   95327702       95633311     NR_110754  LOC101927284
11  chr13   95327702       95633311     NR_120417  LOC101927248
12  chr14   26998570       27159682     NM_002515         NOVA1
14  chr15   21103436       21218054     NR_028506         NF1P2
15  chr15   21103436       21218054     NR_040094     LINC01193
16  chr15   21103436       21218054     NR_049895     MIR5701-2
17   chr4   73007251       73417676     NM_004885        NPFFR2
18   chr4   73007251       73417676     NM_014243       ADAMTS3
20   chr9   95724096       95920754  NM_001083536          FGD3
22   chr9   95724096       95920754  NM_001287005         SUSD3
23   chr9   95724096       95920754     NM_004148         NINJ1
25   chr9   95724096       95920754     NR_121565  LOC101927954
26   chr9   95724096       95920754     NR_134468        CARD19,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr17    1127873        1266742  NM_001164405    BHLHA9
1   chr17    1127873        1266742  NM_001322841       ABR
3   chr17    1127873        1266742     NM_006761     YWHAE
4   chr17    1127873        1266742     NM_172367     TUSC5
5    chr4  128371596      128703948  NM_001317381    HSPA4L
7    chr4  128371596      128703948  NM_001318467  SLC25A31
8    chr4  128371596      128703948     NM_015693      INTU
9    chr7   14790397       15020396     NM_004080      DGKB
11   chr9  101921413      102029306     NM_006808    SEC61B
12   chr9  101921413      102029306     NM_033087      ALG2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   32490012       32606414     NM_000343        SLC5A1
1   chr22   32490012       32606414  NM_001010859      C22orf42
2   chr22   32490012       32606414  NM_001098527         RFPL2
7   chr22   32490012       32606414     NR_040114       AP1B1P1
8    chr4    8978155        9387020  NM_001242326      USP17L25
16   chr4    8978155        9387020  NM_001256852      USP17L10
17   chr4    8978155        9387020  NM_001256853      USP17L12
19   chr4    8978155        9387020  NM_001256854      USP17L11
22   chr4    8978155        9387020  NM_001256855      USP17L13
23   chr4    8978155        9387020  NM_001256857      USP17L17
24   chr4    8978155        9387020  NM_001256860      USP17L19
25   chr4    8978155        9387020  NM_001256861      USP17L20
26   chr4    8978155        9387020  NM_001256894      USP17L15
27   chr4    8978155        9387020     NR_027279      USP17L6P
28   chr4    8978155        9387020     NR_046416      USP17L9P
29   chr6  131085126      131521623  NM_001135554       EPB41L2
30   chr6  131085126      131521623  NM_001195597         SMLR1
32   chr6  131085126      131521623     NM_016377         AKAP7
33   chr7   64209363       66753638     NM_000048           ASL
34   chr7   64209363       66753638     NM_000181          GUSB
35   chr7   64209363       66753638  NM_001007253        ERV3-1
37   chr7   64209363       66753638  NM_001160183        ZNF138
38   chr7   64209363       66753638  NM_001167961         KCTD7
39   chr7   64209363       66753638  NM_001287060       RABGEF1
42   chr7   64209363       66753638  NM_001287532         ZNF92
44   chr7   64209363       66753638     NM_003596         TPST1
45   chr7   64209363       66753638     NM_015852        ZNF117
46   chr7   64209363       66753638     NM_016038          SBDS
47   chr7   64209363       66753638     NM_017994       TMEM248
48   chr7   64209363       66753638     NM_018264          TYW1
49   chr7   64209363       66753638     NM_021148        ZNF273
50   chr7   64209363       66753638     NM_173517      VKORC1L1
51   chr7   64209363       66753638     NR_002961       SNORA22
52   chr7   64209363       66753638     NR_003110        CCT6P1
53   chr7   64209363       66753638     NR_003934    GTF2IRD1P1
54   chr7   64209363       66753638     NR_024548          CRCP
55   chr7   64209363       66753638     NR_026873     LINC00174
56   chr7   64209363       66753638     NR_027392       INTS4P2
57   chr7   64209363       66753638     NR_033416        CCT6P3
58   chr7   64209363       66753638     NR_038378     LOC441242
59   chr7   64209363       66753638     NR_039793     MIR4650-1
60   chr7   64209363       66753638     NR_046297        PMS2P4
65   chr7   64209363       66753638     NR_110037  LOC100996437
66   chr7   64209363       66753638     NR_111972  GS1-124K5.11
69   chr7   64209363       66753638     NR_134570   GS1-124K5.4
71   chr7   64209363       66753638     NR_135738      GTF2IP23
72   chr7   64209363       66753638     NR_136637     LOC644794
73   chr9   41919423       42051565     NR_003670        FGF7P3
74   chr9   41919423       42051565     NR_015363         GLIDR
77   chr9   41919423       42051565     NR_126048  LOC102724238
78   chr9   41919423       42051565     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   28664244       28805197  NM_001199142      EIF3C
2  chr16   28664244       28805197  NM_001287251     NPIPB9
3  chr16   28664244       28805197  NM_001310136     NPIPB8
4  chr16   28664244       28805197  NM_001317856     EIF3CL
5  chr16   28664244       28805197     NR_107058  MIR6862-2
6  chr18   63208286       63519599  NM_001317214       CDH7
9   chr7  110547430      110657399  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21914568       22287042  NM_001001912     OR4E2
1   chr14   21914568       22287042  NM_001005465    OR10G3
2   chr14   21914568       22287042  NM_001005466    OR10G2
3   chr14   21914568       22287042  NM_001163380     RAB2B
4   chr14   21914568       22287042  NM_001303523      TOX4
5   chr14   21914568       22287042  NM_001317107     OR4E1
6   chr14   21914568       22287042     NM_019852    METTL3
8   chr14   21914568       22287042     NR_111966     SALL2
10   chr8   97765318       97963568     NM_016134       CPQ,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67897565       68025572  NM_001127384    CTNNA3
2  chr11   89063595       89219604  NM_001143837      NOX4
7  chr16    6447300        6611887  NM_001308117    RBFOX1
9   chr6  162843408      162970398     NM_013988     PARK2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   11524966       11645425  NM_001080491        USP6NL
3   chr6   97478585       97972400  NM_001286251        KLHL32
7   chr6   97478585       97972400     NM_198468        MMS22L
8   chr6   97478585       97972400     NR_031679      MIR548H3
9   chr6   97478585       97972400     NR_110757  LOC101927314,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   78370306       79030434  NM_001142545         ADCK1
1   chr14   78370306       79030434     NM_004796         NRXN3
3    chr5   99603854       99743894     NR_027503  LOC100133050
4    chr7  143030552      144609551     NM_000083         CLCN1
5    chr7  143030552      144609551  NM_001001659        OR2A14
6    chr7  143030552      144609551  NM_001003702      ARHGEF35
7    chr7  143030552      144609551  NM_001004135        OR2A12
8    chr7  143030552      144609551  NM_001004488        OR2A25
9    chr7  143030552      144609551  NM_001004685         OR2F2
10   chr7  143030552      144609551  NM_001005281         OR6B1
11   chr7  143030552      144609551  NM_001005287         OR2A1
13   chr7  143030552      144609551  NM_001005328         OR2A7
14   chr7  143030552      144609551  NM_001005480         OR2A2
15   chr7  143030552      144609551  NM_001008747       CTAGE15
16   chr7  143030552      144609551  NM_001080413         NOBOX
17   chr7  143030552      144609551  NM_001130025         TCAF2
19   chr7  143030552      144609551  NM_001206938         TCAF1
21   chr7  143030552      144609551  NM_001278297       FAM131B
22   chr7  143030552      144609551  NM_001278507        CTAGE8
23   chr7  143030552      144609551  NM_001322263  LOC100507507
24   chr7  143030552      144609551     NM_003461           ZYX
25   chr7  143030552      144609551     NM_005232         EPHA1
26   chr7  143030552      144609551     NM_005435       ARHGEF5
27   chr7  143030552      144609551     NM_012365         OR2A5
28   chr7  143030552      144609551     NM_012369         OR2F1
31   chr7  143030552      144609551     NM_022445          TPK1
33   chr7  143030552      144609551     NM_176883       TAS2R41
34   chr7  143030552      144609551     NM_177437       TAS2R60
35   chr7  143030552      144609551     NM_178561        CTAGE6
36   chr7  143030552      144609551     NM_198495        CTAGE4
38   chr7  143030552      144609551     NR_002157        OR2A9P
40   chr7  143030552      144609551     NR_002158       OR2A20P
42   chr7  143030552      144609551     NR_015421     LOC154761
43   chr7  143030552      144609551     NR_033897     EPHA1-AS1
44   chr7  143030552      144609551     NR_033942     ARHGEF34P
45   chr7  143030552      144609551     NR_106952       MIR6892
46   chr7  143030552      144609551     NR_110549       TCAF2P1
48   chr7  143030552      144609551     NR_126022  LOC101928605
49   chr7  143030552      144609551     NR_126023     OR2A1-AS1
51   chr9   38938727       39084629     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr12   71488674       71727894  NM_004616        TSPAN8
1   chr4  188266623      188840285  NR_038931     LOC339975
2   chr4  188266623      188840285  NR_110436  LOC100506272,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  144775966      144891364  NM_001002811   PDE4DIP
4  chr1  144775966      144891364  NM_001277444     NBPF9
5  chr1  144775966      144891364  NM_001278267    NBPF20
6  chr1  144775966      144891364     NR_102405     NBPF8
7  chr3    4121259        4504284  NM_001164675     SUMF1
8  chr3    4121259        4504284  NM_001243723    SETMAR,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  122000467      122183978     NR_024430   MIR100HG
1   chr11  122000467      122183978     NR_029477  MIRLET7A2
2   chr11  122000467      122183978     NR_029515     MIR100
9   chr19    1063172        1167801  NM_001039848       GPX4
10  chr19    1063172        1167801  NM_001100122      SBNO2
11  chr19    1063172        1167801  NM_001258328   ARHGAP45
14  chr19    1063172        1167801  NM_001316323     POLR2E
19  chr19    1063172        1167801     NM_019112      ABCA7
20   chr4  181977012      182282621     NR_033918  LINC00290
21   chr9    9493708        9699934     NM_002839      PTPRD,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   48348596       48723955  NM_001005512       OR4A47
1   chr11   48348596       48723955  NM_001005513       OR4C45
2    chr2   84674965       84811249     NM_001370        DNAH6
3    chr2   84674965       84811249     NM_003849       SUCLG1
4   chr20   14421940       14540750     NM_080676      MACROD2
5   chr20   14421940       14540750     NR_104193  MACROD2-IT1
6    chr3  160108658      160253980  NM_001190241        IFT80
7    chr3  160108658      160253980  NM_001288753         SMC4
8    chr3  160108658      160253980     NM_002268        KPNA4
10   chr3  160108658      160253980     NM_173084       TRIM59
11   chr3  160108658      160253980     NR_003001      SCARNA7
12   chr3  160108658      160253980     NR_029525      MIR16-2
13   chr3  160108658      160253980     NR_029663       MIR15B
14   chr4   69111175       69217398  NM_001031732       YTHDC1
15   chr4   69111175       69217398     NM_182502    TMPRSS11B
16   chr6    5138609        5386961  NM_001164840        LYRM4
18   chr6    5138609        5386961  NM_001318872        FARS2
21   chr6    5138609        5386961     NR_037462      MIR3691
22   chr6    5138609        5386961     NR_126015    LYRM4-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   21510484       21621934  NM_001077180        METTL9
2  chr16   21510484       21621934     NR_002594      SLC7A5P2
3  chr16   21510484       21621934     NR_027155        SMG1P3
4  chr16   21510484       21621934     NR_049833     MIR3680-2
5  chr16   21510484       21621934     NR_110930  LOC101927814,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   19555203       19683922  NM_001267043         AEBP2
2   chr16   21421947       21554787     NM_130464        NPIPB3
3   chr16   21421947       21554787     NR_002594      SLC7A5P2
4   chr16   21421947       21554787     NR_024456  LOC100190986
5   chr16   21421947       21554787     NR_027155        SMG1P3
6   chr16   21421947       21554787     NR_049833     MIR3680-2
7   chr16   85244650       85396177     NR_038859     LINC00311
8   chr16   85244650       85396177     NR_049816       MIR5093
9    chr5    6159550        7320043  NM_001145161       UBE2QL1
10   chr5    6159550        7320043  NM_001171805         PAPD7
12   chr5    6159550        7320043  NM_001324322        SRD5A1
13   chr5    6159550        7320043     NM_032286         MED10
14   chr5    6159550        7320043     NR_024423     LINC01018
16   chr5    6159550        7320043     NR_028351      FLJ33360
17   chr5    6159550        7320043     NR_033906     LOC442132
18   chr5    6159550        7320043     NR_036242       MIR4278
19   chr5    6159550        7320043     NR_037947         NSUN2
20   chr5    6159550        7320043     NR_039659       MIR4454
21   chr5    6159550        7320043     NR_103771  LOC100505625
22   chr7  133234273      133968235     NM_021807         EXOC4
23   chr7  133234273      133968235     NM_144648         LRGUK
24   chr7  133234273      133968235     NR_120513  LOC101928861,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr21   23030323       23204334  NR_038872  LINC00317
1  chr21   23030323       23204334  NR_109958  LINC01425,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48259610       48590250  NM_001004702         OR4C3
1   chr11   48259610       48590250  NM_001004725         OR4S1
2   chr11   48259610       48590250  NM_001004726         OR4X1
3   chr11   48259610       48590250  NM_001004727         OR4X2
4   chr11   48259610       48590250  NM_001005512        OR4A47
5   chr11   48259610       48590250  NM_001005513        OR4C45
6   chr16   68568825       68679158  NM_001305204         ZFP90
8   chr16   68568825       68679158  NM_001317195          CDH3
9   chr21   36019182       36147279  NM_001317009         CLIC6
10  chr21   36019182       36147279     NR_024351     LINC00160
11  chr21   36019182       36147279     NR_038885     LINC01426
13   chr6  136912288      137210898     NM_000288          PEX7
14   chr6  136912288      137210898     NM_005923        MAP3K5
15   chr6  136912288      137210898     NR_125858  LOC101928461
16   chr6  136912288      137210898     NR_134635  LOC101928429
17   chr7   64120890       64271531  NM_001160183        ZNF138
18   chr7   64120890       64271531  NM_001282360        ZNF107
21   chr7   64120890       64271531     NR_106898       MIR6839
22   chr7  110606950      111592529  NM_001099658         LRRN3
23   chr7  110606950      111592529  NM_001244606        IMMP2L
24   chr7  110606950      111592529     NM_014705         DOCK4
26   chr7  110606950      111592529     NR_103806     DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  102388170      102579785     NR_110211      OLFM3
1   chr11  134295700      134424369     NR_033852  LOC283177
2   chr14   75185027       75339123  NM_001080408      PROX2
3   chr14   75185027       75339123  NM_001318508       FCF1
5   chr14   75185027       75339123     NM_019589      YLPM1
6   chr16    8591688        8732801  NM_001146336    TMEM114
8   chr16    8591688        8732801     NM_024109    METTL22
10   chr7  145370663      146125738     NM_014141    CNTNAP2
11   chr9   28633317       28799048  NM_001258282     LINGO2
13   chr9   39041362       39187149     NM_033655    CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   58863517       59004338     NM_001110     ADAM10
1  chr15   58863517       59004338     NR_073415  HSP90AB4P
2   chr7    3422464        4543121  NM_001079653       SDK1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   52715090       52964085  NM_001142495      MYO5A
1   chr15   52715090       52964085  NM_001286495    FAM214A
2   chr15   52715090       52964085  NM_001306191     ARPP19
7   chr21   22573515       22714556     NM_004540      NCAM2
8    chr6  130124836      130236348  NM_001010876    TMEM244
9    chr9    7769200        8509321  NM_001318058    TMEM261
10   chr9    7769200        8509321     NM_002839      PTPRD
12   chr9   30392011       30497130     NR_046204  LINC01242,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16    6753595        6867330  NM_001142334     RBFOX1
3   chr2   51323856       51722075     NR_135237  LOC730100
4   chr4   98404846       98596800     NM_174952      STPG2
5   chr4   98404846       98596800     NR_102713  STPG2-AS1,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr15   43954163       44176930  NM_001018108           SERF2
1   chr15   43954163       44176930  NM_001167941           WDR76
5   chr15   43954163       44176930  NM_001199885            HYPK
6   chr15   43954163       44176930  NM_001258031         SERINC4
7   chr15   43954163       44176930  NM_001286490           FRMD5
9   chr15   43954163       44176930  NM_001321927          CKMT1A
12  chr15   43954163       44176930     NM_005313           PDIA3
13  chr15   43954163       44176930     NM_005926           MFAP1
14  chr15   43954163       44176930     NM_025165            ELL3
15  chr15   43954163       44176930     NR_002318      CATSPER2P1
16  chr15   43954163       44176930     NR_003571          PIN4P1
17  chr15   43954163       44176930     NR_031695         MIR1282
18  chr15   43954163       44176930     NR_037673  SERF2-C15ORF63,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3  172050415      172231876  NM_001135095    FNDC3B
1  chr3  172050415      172231876  NM_001190942   TNFSF10
2  chr3  172050415      172231876     NM_004122      GHSR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21663022       21767436  NM_001077180        METTL9
1   chr16   21663022       21767436  NM_001161683          OTOA
3   chr16   21663022       21767436     NM_005849         IGSF6
6    chr6  119785781      119994866     NR_046100     LOC285762
7    chr6  119785781      119994866     NR_134600  LOC105377975
8    chr6  155389137      156054058  NM_001001346        CLDN20
9    chr6  155389137      156054058  NM_001010927         TIAM2
11   chr6  155389137      156054058     NM_015718          NOX3
12   chr6  155389137      156054058     NM_016020         TFB1M
13   chr6  155389137      156054058     NR_134596  LOC105378068,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245051433      245243920  NM_001143943        EFCAB2
3    chr1  245051433      245243920     NR_111907  LOC101928068
4   chr10  135274266      135501487     NM_000773        CYP2E1
5   chr10  135274266      135501487  NM_001080998         FRG2B
6   chr10  135274266      135501487  NM_001143763         SYCE1
9   chr10  135274266      135501487     NR_002934        SCART1
10  chr10  135274266      135501487     NR_033789        SPRNP1
11  chr21   23153401       23485424     NR_038400     LINC00308
12  chr21   23153401       23485424     NR_109958     LINC01425
13  chr21   23153401       23485424     NR_109959  LOC101927843
14   chr7   21352664       21480375  NM_001326542           SP4,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0    chr1   12824259       12971513  NM_001009611            PRAMEF4
1    chr1   12824259       12971513  NM_001013631           HNRNPCL1
2    chr1   12824259       12971513  NM_001080830           PRAMEF12
3    chr1   12824259       12971513  NM_001146181           HNRNPCL3
4    chr1   12824259       12971513  NM_001146344           PRAMEF11
5    chr1   12824259       12971513  NM_001294139            PRAMEF1
6    chr1   12824259       12971513  NM_001302551           HNRNPCL4
8    chr1   12824259       12971513     NM_023014            PRAMEF2
9   chr16   10490840       10659126  NM_001256160            ATF7IP2
10  chr16   10490840       10659126     NM_001424               EMP2
12  chr22   17130462       17303202     NM_175878               XKR3
13  chr22   17130462       17303202     NR_040115  ANKRD62P1-PARP4P3
14  chr22   17130462       17303202     NR_134584       LOC101929350
15   chr4    9099475        9581645  NM_001040448            DEFB131
16   chr4    9099475        9581645  NM_001242326           USP17L25
24   chr4    9099475        9581645  NM_001256852           USP17L10
25   chr4    9099475        9581645  NM_001256853           USP17L12
27   chr4    9099475        9581645  NM_001256854           USP17L11
30   chr4    9099475        9581645  NM_001256855           USP17L13
31   chr4    9099475        9581645  NM_001256857           USP17L17
32   chr4    9099475        9581645  NM_001256860           USP17L19
33   chr4    9099475        9581645  NM_001256861           USP17L20
34   chr4    9099475        9581645  NM_001256894           USP17L15
35   chr4    9099475        9581645     NR_027279           USP17L6P
36   chr4    9099475        9581645     NR_031688           MIR548I2
37   chr4    9099475        9581645     NR_046416           USP17L9P
38   chr7  153832156      153936864  NM_001039350               DPP6
41   chr9  119687156      119797184     NM_014010              ASTN2,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2    1090510        1283963     NM_018968     SNTG2
1  chr7  110772611      110903802  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr7  110636708      110810953  NM_001099658         LRRN3
1   chr7  110636708      110810953  NM_001244606        IMMP2L
3   chr7  143739724      143989335  NM_001001659        OR2A14
4   chr7  143739724      143989335  NM_001003702      ARHGEF35
5   chr7  143739724      143989335  NM_001004135        OR2A12
6   chr7  143739724      143989335  NM_001004488        OR2A25
7   chr7  143739724      143989335  NM_001005287         OR2A1
8   chr7  143739724      143989335  NM_001005328         OR2A7
9   chr7  143739724      143989335  NM_001005480         OR2A2
10  chr7  143739724      143989335  NM_001278507        CTAGE8
11  chr7  143739724      143989335     NM_012365         OR2A5
12  chr7  143739724      143989335     NM_198495        CTAGE4
14  chr7  143739724      143989335     NR_002157        OR2A9P
15  chr7  143739724      143989335     NR_002158       OR2A20P
16  chr7  143739724      143989335     NR_033942     ARHGEF34P
17  chr7  143739724      143989335     NR_126022  LOC101928605
18  chr7  143739724      143989335     NR_126023     OR2A1-AS1
20  chr9   28630394       28885363  NM_001258282        LINGO2
22  chr9   28630394       28885363     NR_030597        MIR876
23  chr9   41863328       42368959  NM_001012419     ANKRD20A3
24  chr9   41863328       42368959  NM_001012421     ANKRD20A2
25  chr9   41863328       42368959     NR_003670        FGF7P3
26  chr9   41863328       42368959     NR_015363         GLIDR
29  chr9   41863328       42368959     NR_126048  LOC102724238
30  chr9   41863328       42368959     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   45658383       45831366  NM_001308133     FANCM
1  chr14   45658383       45831366     NM_018353  MIS18BP1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr12   27226358       27800020  NM_001080406    C12orf71
1   chr12   27226358       27800020  NM_001145010       SMCO2
2   chr12   27226358       27800020  NM_001248002      ARNTL2
3   chr12   27226358       27800020     NM_015000      STK38L
4   chr12   27226358       27800020     NM_177444     PPFIBP1
5   chr12   27226358       27800020     NR_109975  ARNTL2-AS1
6   chr18    8149488        8269199     NM_002845       PTPRM
7   chr20   14630085       14843485     NM_080676     MACROD2
8   chr21   22682216       22793728     NM_004540       NCAM2
9    chr3    4093360        4451114  NM_001164675       SUMF1
10   chr3    4093360        4451114  NM_001243723      SETMAR,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    4289415        4456570  NM_001005161     OR52B4
1   chr11    4289415        4456570     NM_003141     TRIM21
2   chr16   83945376       84330849  NM_001080442    SLC38A8
3   chr16   83945376       84330849  NM_001145400      ADAD2
4   chr16   83945376       84330849  NM_001146051      HSDL1
5   chr16   83945376       84330849  NM_001243156      TAF1C
6   chr16   83945376       84330849  NM_001282466      WFDC1
7   chr16   83945376       84330849  NM_001318756     DNAAF1
8   chr16   83945376       84330849     NM_003791     MBTPS1
9   chr16   83945376       84330849     NM_012213      MLYCD
10  chr16   83945376       84330849     NM_019065     NECAB2
11  chr16   83945376       84330849     NM_172347      KCNG4
13  chr16   83945376       84330849     NM_182981     OSGIN1
14   chr7  111205488      111478901     NM_014705      DOCK4
15   chr7  111205488      111478901     NR_103806  DOCK4-AS1,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr10   81517663       81653073     NR_029407   LOC642361
1  chr10   81517663       81653073     NR_120611  NUTM2B-AS1
4  chr12   16291933       16453734  NM_001170798     SLC15A5, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67878494       68396786  NM_001127384    CTNNA3
2  chr16   76786752       76962398     NR_039870   MIR4719
3   chr6  162625596      162825070     NM_013988     PARK2
4   chr9   39012842       39136788     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr19   23802500       23928132     NM_138286     ZNF681
1   chr19   23802500       23928132     NM_138330     ZNF675
2   chr19   47783630       47957519  NM_001009813      MEIS3
3   chr19   47783630       47957519  NM_001271749      C5AR2
7   chr19   47783630       47957519     NM_001736      C5AR1
8   chr19   47783630       47957519     NM_014681      DHX34
9   chr19   47783630       47957519     NM_015063     SLC8A2
11   chr4  181991750      182192268     NR_033918  LINC00290
12   chr9    2515238        2713488     NM_003383      VLDLR
13   chr9    2515238        2713488     NR_015375  VLDLR-AS1,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr4   69313002       69413079     NM_001077    UGT2B17
1  chr4   69313002       69413079     NM_014058  TMPRSS11E
2  chr7   75909319       76040024  NM_001110199      SRRM3
3  chr7   75909319       76040024     NM_001540      HSPB1
4  chr7   75909319       76040024     NM_007155        ZP3
5  chr7   75909319       76040024     NM_012479      YWHAG
6  chr7   75909319       76040024     NM_080744      SSC4D,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144803721      144964770  NM_001002810       PDE4DIP
7    chr1  144803721      144964770  NM_001277444         NBPF9
8    chr1  144803721      144964770  NM_001278267        NBPF20
10   chr1  144803721      144964770     NR_102405         NBPF8
11   chr1  152420055      152701043  NM_001024679       C1orf68
12   chr1  152420055      152701043     NM_014357         LCE2B
13   chr1  152420055      152701043     NM_019060         CRCT1
14   chr1  152420055      152701043     NM_032563         LCE3D
15   chr1  152420055      152701043     NM_178356         LCE4A
16   chr1  152420055      152701043     NM_178428         LCE2A
17   chr1  152420055      152701043     NM_178429         LCE2C
18   chr1  152420055      152701043     NM_178430         LCE2D
19   chr1  152420055      152701043     NM_178431         LCE3A
20   chr1  152420055      152701043     NM_178433         LCE3B
21   chr1  152420055      152701043     NM_178434         LCE3C
22   chr1  152420055      152701043     NM_178435         LCE3E
23   chr1  152420055      152701043     NM_178438         LCE5A
24  chr14   81614280       81971634  NM_001244984         SEL1L
25  chr14   81614280       81971634  NM_001256430         STON2
26  chr14   81614280       81971634  NM_001278940        GTF2A1
30  chr14   81614280       81971634     NR_003021       SNORA79
31  chr14   81614280       81971634     NR_109999  LOC100506700
32  chr14   81614280       81971634     NR_135252  LOC101928504
33   chr3    2277986        2648210  NM_001206955         CNTN4,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   30228485       30545152  NM_001282472       GOLGA8J
1  chr15   30228485       30545152  NM_001301025          TJP1
2  chr15   30228485       30545152     NR_026771  DKFZP434L187
3  chr15   30228485       30545152     NR_026859        ULK4P3
4  chr15   30228485       30545152     NR_033933       GOLGA8T
5   chr4  169216889      169348080  NM_001012967        DDX60L
7   chr4  169216889      169348080     NM_017631         DDX60,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr6   65539166       65716876  NM_001142800       EYS
1  chr7   69248487       69474235  NM_001127231     AUTS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72597109       72818641     NM_013381         TRHDE
1   chr12   72597109       72818641     NR_026836     TRHDE-AS1
3   chr16   21520592       21719246  NM_001077180        METTL9
4   chr16   21520592       21719246  NM_001161683          OTOA
6   chr16   21520592       21719246     NM_005849         IGSF6
9   chr16   21520592       21719246     NR_002594      SLC7A5P2
10  chr16   21520592       21719246     NR_110930  LOC101927814
11  chr22   32323613       32539237     NM_000343        SLC5A1
13  chr22   32323613       32539237  NM_001302819      C22orf24
14  chr22   32323613       32539237     NM_003405         YWHAH
16  chr22   32323613       32539237     NR_040114       AP1B1P1
17   chr4   69098431       69201617  NM_001031732        YTHDC1
18   chr4   69098431       69201617     NM_182502     TMPRSS11B
19   chr5      80716         399105  NM_001080478       LRRC14B
20   chr5      80716         399105  NM_001242412          AHRR
21   chr5      80716         399105     NM_004168          SDHA
22   chr5      80716         399105     NM_013232         PDCD6
23   chr5      80716         399105     NM_052909      PLEKHG4B
24   chr5      80716         399105     NM_145265       CCDC127
26   chr5      80716         399105     NR_104613         HRAT5
27   chr9    9996853       10106665     NM_002839         PTPRD
28   chr9   66997537       67109047     NR_046175     LOC286297
29   chr9   66997537       67109047     NR_135597  LOC101928195
30   chr9   66997537       67109047     NR_136299  LOC101929583,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr12    5081943        5187562  NM_002234     KCNA5
1   chr2   49086913       49204920  NM_181446      FSHR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   75963660       76132674  NM_001130058       SLC44A5
4   chr19    1815538        1959908  NM_001130111       ABHD17A
5   chr19    1815538        1959908     NM_001319       CSNK1G2
6   chr19    1815538        1959908  NM_001329539        SCAMP4
7   chr19    1815538        1959908     NM_020695         REXO1
8   chr19    1815538        1959908     NM_031918         KLF16
9   chr19    1815538        1959908     NM_138422         ADAT3
10  chr19    1815538        1959908     NR_031730       MIR1909
11  chr19    1815538        1959908     NR_033400   CSNK1G2-AS1
12  chr19    1815538        1959908     NR_034114  LOC100288123,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244999746      245202400  NM_001143943        EFCAB2
2    chr1  244999746      245202400  NM_001312871         COX20
4    chr1  244999746      245202400     NM_004501        HNRNPU
7    chr1  244999746      245202400     NR_111907  LOC101928068
8    chr1  244999746      245202400     NR_132782      SNORA100
9   chr13   63097246       63633070     NR_047029     LINC00448
12   chr5  151357919      151471443     NR_109876    CTB-12O2.1
13   chr9   30268519       30709949     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr20   23378752       23881805     NM_000099      CST3
1   chr20   23378752       23881805  NM_001008693      CST9
2   chr20   23378752       23881805  NM_001283018      NAPB
4   chr20   23378752       23881805     NM_001322      CST2
5   chr20   23378752       23881805     NM_001898      CST1
6   chr20   23378752       23881805     NM_001899      CST4
7   chr20   23378752       23881805     NM_001900      CST5
8   chr20   23378752       23881805     NM_005492      CST8
9   chr20   23378752       23881805     NM_080610     CST9L
10  chr20   23378752       23881805     NM_080830     CST11
11  chr20   23378752       23881805     NM_138283     CSTL1
12  chr20   23378752       23881805     NR_001279    CST13P
13   chr9   39070321       39196558     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  117332302      117485313     NM_207303        ATRNL1
1   chr16   21550254       21702771  NM_001077180        METTL9
2   chr16   21550254       21702771  NM_001161683          OTOA
4   chr16   21550254       21702771     NM_005849         IGSF6
6   chr16   21550254       21702771     NR_110930  LOC101927814
7    chr2   77993993       78122668     NR_110288  LOC101927967
8    chr5  120499172      121916530  NM_001178102           LOX
9    chr5  120499172      121916530  NM_001195535  LOC100505841
12   chr5  120499172      121916530     NM_005460        SNCAIP
13   chr5  120499172      121916530     NM_152546        SRFBP1
14   chr5  120499172      121916530     NM_177478          FTMT
15   chr5  120499172      121916530     NM_207317        ZNF474
16   chr5  120499172      121916530     NR_051996      MGC32805
17   chr5  120499172      121916530     NR_104999  LOC102467226
20   chr8     457809         607383  NM_001256113          TDRP
21   chr8     457809         607383  NM_001303100        ERICH1,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr9   31251969       31505218  NR_135134  LINC01243,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81517099       81706951     NM_003019       SFTPD
1   chr10   81517099       81706951     NR_002724       MBL1P
2   chr10   81517099       81706951     NR_029407   LOC642361
3   chr10   81517099       81706951     NR_033857     BMS1P21
4   chr10   81517099       81706951     NR_120611  NUTM2B-AS1
7    chr2   50757153       50957675  NM_001330082       NRXN1
8    chr2   50757153       50957675     NR_130470     MIR8485
9    chr2  185131017      185628054     NM_194250     ZNF804A
10   chr2  185131017      185628054     NR_039638   MIR548AE1
11   chr4   69181031       69578547  NM_001031732      YTHDC1
12   chr4   69181031       69578547     NM_001076     UGT2B15
13   chr4   69181031       69578547     NM_001077     UGT2B17
14   chr4   69181031       69578547     NM_014058   TMPRSS11E
15   chr9   38856944       39479401  NM_001085452   SPATA31A1
16   chr9   38856944       39479401     NM_033655     CNTNAP3
17   chr9   38856944       39479401     NR_003528     ZNF658B
18   chr9   38856944       39479401     NR_026803     FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48367726       48513513  NM_001005512     OR4A47
1   chr11   48367726       48513513  NM_001005513     OR4C45
2   chr13   80777782       81023074  NM_001318536      SPRY2
5   chr15   98266822       98397545     NR_024172  LINC00923
6   chr16    6972915        7150289  NM_001142334     RBFOX1
9    chr4    9084169        9228171  NM_001256852   USP17L10
10   chr4    9084169        9228171  NM_001256853   USP17L12
11   chr4    9084169        9228171  NM_001256854   USP17L11
12   chr4    9084169        9228171  NM_001256855   USP17L13
13   chr9   28604948       29091357  NM_001258282     LINGO2
15   chr9   28604948       29091357     NR_030597     MIR876
16   chr9   28604948       29091357     NR_030618     MIR873,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   12765555       12876571  NM_001080830  PRAMEF12
1    chr1   12765555       12876571  NM_001103170   AADACL3
2    chr1   12765555       12876571  NM_001294139   PRAMEF1
4    chr1   12765555       12876571     NM_152290  C1orf158
5   chr14   42081717       42219361  NM_001346175     LRFN5
6   chr19   47804886       47911342  NM_001009813     MEIS3
7   chr19   47804886       47911342  NM_001271749     C5AR2
11  chr19   47804886       47911342     NM_001736     C5AR1
12  chr19   47804886       47911342     NM_014681     DHX34
14   chr5    6120783        6343582     NR_028351  FLJ33360
15   chr7  110557814      110679926  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   28568409       28697400     NR_033351    GOLGA8F
1   chr15   28568409       28697400     NR_033353    GOLGA8G
2   chr15   28568409       28697400     NR_039734  MIR4509-3
3    chr2  132018600      132269588  NM_001077637     WTH3DI
4    chr2  132018600      132269588  NM_001083538      POTEE
5    chr2  132018600      132269588  NM_001085365      MZT2A
6    chr2  132018600      132269588     NM_080386     TUBA3D
7    chr2  132018600      132269588     NR_002826    NOC2LP2
8    chr2  132018600      132269588     NR_026922  LOC150776
9    chr2  132018600      132269588     NR_030728  LOC440910
10   chr2  132018600      132269588     NR_036499  LINC01120
11   chr2  132018600      132269588     NR_039945    MIR4784
12   chr2  193636753      193903182     NR_002769     PCGEM1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  185931961      186341257  NM_001303232          PRG4
1   chr1  185931961      186341257     NM_003292           TPR
2   chr1  185931961      186341257     NM_031935         HMCN1
3  chr10   19652590       20075432  NM_001142308        MALRD1
4  chr10   19652590       20075432     NR_120646  LOC101928834
5   chr7   75717845       75845388  NM_001110199         SRRM3
6   chr7   75717845       75845388     NR_135079       GTF2IP7,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13  113434240      113778847     NM_000131         F7
1  chr13  113434240      113778847     NM_000504        F10
2  chr13  113434240      113778847  NM_001112732      MCF2L
6  chr13  113434240      113778847     NM_015205     ATP11A
7  chr13  113434240      113778847     NR_034002  MCF2L-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr19   23825896       24508667  NM_001244038    ZNF726
1  chr19   23825896       24508667  NM_001278661    ZNF254
4  chr19   23825896       24508667     NM_138286    ZNF681
5  chr19   23825896       24508667     NM_138330    ZNF675
6  chr19   23825896       24508667     NR_003603  HAVCR1P1
7  chr19   23825896       24508667     NR_003662   RPSAP58,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1  193286188      193448909     NR_125789    LINC01031
1   chr7  110653558      110934318  NM_001099658        LRRN3
2   chr7  110653558      110934318  NM_001244606       IMMP2L
4   chr9   11761471       13529640     NM_000550        TYRP1
5   chr9   11761471       13529640  NM_001261407         MPDZ
7   chr9   11761471       13529640     NM_203403      LURAP1L
8   chr9   11761471       13529640     NR_033863     FLJ41200
9   chr9   11761471       13529640     NR_125775  LURAP1L-AS1
10  chr9   11761471       13529640     NR_132976     SNORD137,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  102405773      102524544     NR_110211     OLFM3
1  chr19   24201359       24421304  NM_001278661    ZNF254
4  chr19   24201359       24421304     NR_003603  HAVCR1P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   22399614       22628147     NR_047040     LINC00424
1    chr3  155560999      155670066  NM_001190992       SLC33A1
2    chr3  155560999      155670066     NM_003875          GMPS
3    chr6  146407150      154138311     NM_000125          ESR1
4    chr6  146407150      154138311  NM_001002255         SUMO4
5    chr6  146407150      154138311  NM_001029884       PLEKHG1
6    chr6  146407150      154138311  NM_001030060         SAMD5
9    chr6  146407150      154138311  NM_001127715        STXBP5
10   chr6  146407150      154138311  NM_001142522         FBXO5
11   chr6  146407150      154138311  NM_001164694           IYD
12   chr6  146407150      154138311  NM_001204076        KATNA1
13   chr6  146407150      154138311  NM_001242767       MTHFD1L
16   chr6  146407150      154138311  NM_001243325        RAET1E
19   chr6  146407150      154138311  NM_001252049         PCMT1
21   chr6  146407150      154138311  NM_001270519         LATS1
22   chr6  146407150      154138311  NM_001271937         RMND1
23   chr6  146407150      154138311  NM_001278064          GRM1
25   chr6  146407150      154138311  NM_001286562         ARMT1
27   chr6  146407150      154138311  NM_001292034          TAB2
29   chr6  146407150      154138311  NM_001301872        MTRF1L
30   chr6  146407150      154138311  NM_001317089         ULBP1
34   chr6  146407150      154138311  NM_001346505         SASH1
39   chr6  146407150      154138311     NM_005100        AKAP12
40   chr6  146407150      154138311     NM_005715           UST
41   chr6  146407150      154138311     NM_006834         RAB32
43   chr6  146407150      154138311     NM_012419         RGS17
45   chr6  146407150      154138311     NM_020861         ZBTB2
46   chr6  146407150      154138311     NM_024518         ULBP3
47   chr6  146407150      154138311     NM_024694          ADGB
48   chr6  146407150      154138311     NM_025059       CCDC170
49   chr6  146407150      154138311     NM_025107         MYCT1
50   chr6  146407150      154138311     NM_025217         ULBP2
51   chr6  146407150      154138311     NM_030949      PPP1R14C
52   chr6  146407150      154138311     NM_032832         LRP11
53   chr6  146407150      154138311     NM_033071         SYNE1
54   chr6  146407150      154138311     NM_130900        RAET1L
55   chr6  146407150      154138311     NM_138785         GINM1
56   chr6  146407150      154138311     NM_139126         PPIL4
59   chr6  146407150      154138311     NM_194435           VIP
60   chr6  146407150      154138311     NM_198887         NUP43
61   chr6  146407150      154138311     NM_207360       ZC3H12D
62   chr6  146407150      154138311     NR_003954     KATNBL1P6
63   chr6  146407150      154138311     NR_024045        RAET1K
64   chr6  146407150      154138311     NR_034115    STXBP5-AS1
65   chr6  146407150      154138311     NR_036121       MIR3163
66   chr6  146407150      154138311     NR_038408       UST-AS1
67   chr6  146407150      154138311     NR_045126    RAET1E-AS1
70   chr6  146407150      154138311     NR_077247       RPS18P9
71   chr6  146407150      154138311     NR_106988     MIR7641-2
72   chr6  146407150      154138311     NR_120501     SYNE1-AS1
73   chr6  146407150      154138311     NR_125860  LOC101928661
75   chr6  146407150      154138311     NR_125868  LOC102723831
77   chr6  146407150      154138311     NR_130110        RAET1G
78   chr6  146407150      154138311     NR_132442        LUADT1
79   chr6  146407150      154138311     NR_134598  LOC105378052
80   chr6  146407150      154138311     NR_134599  LOC105378047
81   chr6  146407150      154138311     NR_134652     LOC645967
84   chr7   17708227       17833048     NM_015132         SNX13,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr1  245022885      245125112  NM_004501        HNRNPU
1  chr2  185139384      186145581  NM_194250       ZNF804A
2  chr2  185139384      186145581  NR_039638     MIR548AE1
3  chr2  185139384      186145581  NR_136319  LOC105373782
4  chr7   14806738       15035471  NM_004080          DGKB,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   81592324       81831021     NR_110161  LOC100507201
1  chr3   59995922       60353276  NM_001320899          FHIT
3  chr6  162657102      162916142     NM_013988         PARK2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   83040680       83207586  NM_001220488     CDH13
2   chr5  154172594      154286490  NM_001301074     CNOT8
5   chr5  154172594      154286490     NM_015315     LARP1
6   chr5  154172594      154286490     NM_015465    GEMIN5
7   chr5  154172594      154286490     NM_032385    FAXDC2
8   chr5  154172594      154286490     NR_039667   MIR378H,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  135228040      135578510     NM_000773     CYP2E1
1   chr10  135228040      135578510  NM_001012508       SPRN
2   chr10  135228040      135578510  NM_001080998      FRG2B
3   chr10  135228040      135578510  NM_001143763      SYCE1
6   chr10  135228040      135578510     NM_138384       MTG1
7   chr10  135228040      135578510     NR_002934     SCART1
8   chr10  135228040      135578510     NR_033789     SPRNP1
9   chr16   29533037       29655823     NR_049833  MIR3680-2
10  chr16   29533037       29655823     NR_135305     SMG1P2
12   chr7  110647223      110839601  NM_001099658      LRRN3
13   chr7  110647223      110839601  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48320565       48587506  NM_001004702         OR4C3
1   chr11   48320565       48587506  NM_001004725         OR4S1
2   chr11   48320565       48587506  NM_001005512        OR4A47
3   chr11   48320565       48587506  NM_001005513        OR4C45
4   chr11   95907769       96201845  NM_001261833          JRKL
5   chr11   95907769       96201845  NM_001318737        CCDC82
7   chr11   95907769       96201845     NM_032427         MAML2
8   chr11   95907769       96201845     NR_036125      MIR1260B
9   chr11   95907769       96201845     NR_047481      JRKL-AS1
10  chr12   72609372       72810789     NM_013381         TRHDE
11  chr12   72609372       72810789     NR_026836     TRHDE-AS1
13  chr15   20677653       21014743  NM_001145004      GOLGA6L6
14  chr15   20677653       21014743     NR_027411      GOLGA8CP
15  chr15   20677653       21014743     NR_027992        NBEAP1
16  chr15   20677653       21014743     NR_036432       HERC2P3
17   chr2   97224598       97375239  NM_001115016        KANSL3
18   chr2   97224598       97375239  NM_001293083        FER1L5
19   chr2   97224598       97375239  NM_001322354        LMAN2L
22   chr7   64038609       64161978  NM_001282360        ZNF107
23   chr7   64038609       64161978     NR_033245     LOC641746
24   chr7   64038609       64161978     NR_077227  LOC100128885
26   chr7   64038609       64161978     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   52782251       53091992  NM_001142495      MYO5A
1  chr15   52782251       53091992  NM_001286495    FAM214A
2  chr15   52782251       53091992  NM_001306191     ARPP19
6  chr15   52782251       53091992     NM_004498    ONECUT1
9   chr2   51331418       51437851     NR_135237  LOC730100,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   54163775       54287660     NR_120641     LINC01468
2  chr10   67980433       68083614  NM_001127384        CTNNA3
4   chr6  145884882      146344664  NM_001042683         SHPRH
5   chr6  145884882      146344664     NM_005670         EPM2A
6   chr6  145884882      146344664     NM_032145        FBXO30
7   chr6  145884882      146344664     NR_038245  LOC100507557,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr2   75836244       75962928  NM_001201334        GCFC2
3    chr2   75836244       75962928     NM_014763       MRPL19
4    chr2  133120668      133253466     NM_001508        GPR39
5   chr20   14887896       14995342     NM_080676      MACROD2
6   chr20   14887896       14995342     NR_037841  MACROD2-AS1
8    chr7  110503348      110640773  NM_001244606       IMMP2L
10   chr9   41846320       41963180     NR_003670       FGF7P3
11   chr9   41846320       41963180     NR_015363        GLIDR,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr7   63901838       64097893  NM_001130022        ZNF680
2  chr7   63901838       64097893     NR_033245     LOC641746
3  chr7   63901838       64097893     NR_077227  LOC100128885
4  chr7  110661520      111172218  NM_001099658         LRRN3
5  chr7  110661520      111172218  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr20   23368343       23566697  NM_001283018      NAPB
1   chr20   23368343       23566697     NM_005492      CST8
2   chr20   23368343       23566697     NM_080610     CST9L
3   chr20   23368343       23566697     NM_080830     CST11
4   chr20   23368343       23566697     NM_138283     CSTL1
5   chr20   23368343       23566697     NR_001279    CST13P
6    chr8    6742282        6889999  NM_001302265    DEFA1B
7    chr8    6742282        6889999     NM_001925     DEFA4
8    chr8    6742282        6889999     NM_001926     DEFA6
9    chr8    6742282        6889999     NM_004084     DEFA1
11   chr8    6742282        6889999     NM_005217     DEFA3
12   chr8    6742282        6889999     NR_029386   DEFA10P
13   chr8    6742282        6889999     NR_036686    DEFT1P
15   chr8    6742282        6889999     NR_073407    DEFA8P
16   chr8    6742282        6889999     NR_073408    DEFA9P
17   chr8    6742282        6889999     NR_073421   DEFA11P,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr19   23661839       24456027  NM_001244038       ZNF726
1   chr19   23661839       24456027  NM_001278661       ZNF254
4   chr19   23661839       24456027     NM_138286       ZNF681
5   chr19   23661839       24456027     NM_138330       ZNF675
6   chr19   23661839       24456027     NR_003603     HAVCR1P1
7   chr19   23661839       24456027     NR_003662      RPSAP58
8   chr20   14668838       15334659  NM_001033087      MACROD2
10  chr20   14668838       15334659     NR_037841  MACROD2-AS1, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   86032348       86144033     NR_046989  LINC00351
1   chr16   68576848       68978331  NM_001305204      ZFP90
3   chr16   68576848       68978331  NM_001317184       CDH1
4   chr16   68576848       68978331  NM_001317195       CDH3
5   chr16   68576848       68978331     NM_024562     TANGO6
6   chr16   68576848       68978331     NR_106988  MIR7641-2
7   chr17    3395632        3550062     NM_000049       ASPA
9   chr17    3395632        3550062  NM_001321336    SPATA22
10  chr17    3395632        3550062     NM_004937       CTNS
11  chr17    3395632        3550062     NM_013276       SHPK
12  chr17    3395632        3550062     NM_018727      TRPV1
16  chr17    3395632        3550062     NM_145068      TRPV3
17   chr6  146439030      146589385  NM_001278064       GRM1
19   chr7   79084675       79191428     NR_038343  MAGI2-AS3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   16306224       16448687  NM_001170798   SLC15A5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  189900391      190601748  NM_001317188        BRINP3
2    chr1  189900391      190601748     NR_033922     LOC440704
3    chr1  189900391      190601748     NR_110716     LINC01351
5   chr11   48355734       48504461  NM_001005513        OR4C45
6   chr22   19919596       20804433     NM_000754          COMT
9   chr22   19919596       20804433  NM_001190326         DGCR8
10  chr22   19919596       20804433  NM_001242313      TMEM191B
11  chr22   19919596       20804433  NM_001243537       CCDC188
12  chr22   19919596       20804433  NM_001256523         ZNF74
13  chr22   19919596       20804433  NM_001278639        RANBP1
16  chr22   19919596       20804433  NM_001282512        TXNRD2
17  chr22   19919596       20804433  NM_001283116        TANGO2
20  chr22   19919596       20804433     NM_001670         ARVCF
23  chr22   19919596       20804433     NM_013373        ZDHHC8
24  chr22   19919596       20804433     NM_015672        RIMBP3
25  chr22   19919596       20804433     NM_022727        TRMT2A
26  chr22   19919596       20804433     NM_023004         RTN4R
27  chr22   19919596       20804433     NM_033257        DGCR6L
28  chr22   19919596       20804433     NM_153334        SCARF2
29  chr22   19919596       20804433     NR_003563       PI4KAP1
30  chr22   19919596       20804433     NR_026919     LINC00896
31  chr22   19919596       20804433     NR_029706        MIR185
32  chr22   19919596       20804433     NR_031618       MIR1286
33  chr22   19919596       20804433     NR_031706       MIR1306
34  chr22   19919596       20804433     NR_033825        KLHL22
35  chr22   19919596       20804433     NR_037412       MIR3618
36  chr22   19919596       20804433     NR_038460     LOC284865
37  chr22   19919596       20804433     NR_039918       MIR4761
38  chr22   19919596       20804433     NR_106874       MIR6816
39  chr22   19919596       20804433     NR_136560       FAM230A
40  chr22   19919596       20804433     NR_136569     LOC729461
41  chr22   19919596       20804433     NR_136572  LOC101927859
42   chr9   28479574       28615569  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   76037035       76218290     NM_000016        ACADM
1    chr1   76037035       76218290  NM_001130058      SLC44A5
5    chr1   76037035       76218290     NR_130749       DLSTP1
6    chr1  186241111      186398122  NM_001164245      C1orf27
7    chr1  186241111      186398122  NM_001303232         PRG4
8    chr1  186241111      186398122     NM_003292          TPR
9    chr1  186241111      186398122     NM_022375         OCLM
10  chr10   81511620       81942575  NM_001012973        PLAC9
11  chr10   81511620       81942575  NM_001270367      TMEM254
14  chr10   81511620       81942575  NM_001278407       ANXA11
17  chr10   81511620       81942575     NM_003019        SFTPD
19  chr10   81511620       81942575     NR_002724        MBL1P
20  chr10   81511620       81942575     NR_027431  TMEM254-AS1
21  chr10   81511620       81942575     NR_029407    LOC642361
22  chr10   81511620       81942575     NR_033857      BMS1P21
23  chr10   81511620       81942575     NR_120611   NUTM2B-AS1
27  chr18   55829012       56318718  NM_001144964       NEDD4L
32  chr18   55829012       56318718     NM_052947        ALPK2
33  chr18   55829012       56318718     NR_029667       MIR122
34  chr18   55829012       56318718     NR_039899      MIR3591
35  chr18   55829012       56318718     NR_132963     SNORA108
36  chr19   57537860       57653537     NM_020903        USP29
37  chr19   57537860       57653537     NM_052882         ZIM3
38   chr5      99453         240494  NM_001080478      LRRC14B
39   chr5      99453         240494     NM_004168         SDHA
40   chr5      99453         240494     NM_052909     PLEKHG4B
41   chr5      99453         240494     NM_145265      CCDC127,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   29790772       31347013  NM_001039841     ARHGAP11B
1   chr15   29790772       31347013  NM_001146094          FAN1
3   chr15   29790772       31347013  NM_001252020         TRPM1
5   chr15   29790772       31347013  NM_001282472       GOLGA8J
6   chr15   29790772       31347013  NM_001282484       GOLGA8R
7   chr15   29790772       31347013  NM_001282490       GOLGA8H
8   chr15   29790772       31347013  NM_001301025          TJP1
12  chr15   29790772       31347013     NM_015307      FAM189A1
13  chr15   29790772       31347013     NM_017762        MTMR10
14  chr15   29790772       31347013     NM_139320      CHRFAM7A
15  chr15   29790772       31347013     NR_026771  DKFZP434L187
16  chr15   29790772       31347013     NR_026858        ULK4P1
17  chr15   29790772       31347013     NR_026859        ULK4P3
18  chr15   29790772       31347013     NR_033933       GOLGA8T
19  chr15   29790772       31347013     NR_038253  LOC100288637
21  chr15   29790772       31347013     NR_072991      HERC2P10
22  chr15   29790772       31347013     NR_135221  LOC100130111
23  chr16   16451728       16578716  NM_001282511        NPIPA8
24  chr16   16451728       16578716     NR_106971     MIR6511A4
25  chr16   16434893       16930448  NM_001282511        NPIPA8
26  chr16   16434893       16930448     NR_036447        PKD1P1
27  chr16   16434893       16930448     NR_106971     MIR6511A4
28   chr2   50815310       52353671  NM_001330079         NRXN1
31   chr2   50815310       52353671     NR_130470       MIR8485
32   chr2   50815310       52353671     NR_135237     LOC730100,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12835506       12944573  NM_001009611    PRAMEF4
1    chr1   12835506       12944573  NM_001013631   HNRNPCL1
2    chr1   12835506       12944573  NM_001080830   PRAMEF12
3    chr1   12835506       12944573  NM_001146181   HNRNPCL3
4    chr1   12835506       12944573  NM_001146344   PRAMEF11
5    chr1   12835506       12944573  NM_001294139    PRAMEF1
6    chr1   12835506       12944573  NM_001302551   HNRNPCL4
8    chr1   12835506       12944573     NM_023014    PRAMEF2
9   chr13   22400885       22502930     NR_047040  LINC00424
10  chr15   43811319       43963170  NM_001190214    PPIP5K1
11  chr15   43811319       43963170  NM_001282309   CATSPER2
12  chr15   43811319       43963170     NM_002373      MAP1A
14  chr15   43811319       43963170     NM_020990     CKMT1B
15  chr15   43811319       43963170     NM_153700       STRC
19   chr2  110170103      110330414  NM_001099289     SH3RF3
20   chr2  110170103      110330414  NM_001321504     SEPT10
22   chr9  108450206      108673775     NM_018112    TMEM38B,    chrom  cnv_start  cnv_terminate       tx_name        gene_name
0   chr2   97176021       97608883  NM_001115016           KANSL3
1   chr2   97176021       97608883  NM_001122646          FAM178B
3   chr2   97176021       97608883  NM_001293083           FER1L5
4   chr2   97176021       97608883  NM_001319085           ARID5A
6   chr2   97176021       97608883  NM_001322354           LMAN2L
7   chr2   97176021       97608883     NM_016466          ANKRD39
9   chr2   97176021       97608883     NM_017623            CNNM3
10  chr2   97176021       97608883     NM_017789           SEMA4C
11  chr2   97176021       97608883     NM_020184            CNNM4
13  chr2   97176021       97608883     NM_144994          ANKRD23
14  chr2   97176021       97608883     NR_036074          MIR3127
16  chr2   97176021       97608883     NR_110209     LOC101927053
17  chr2   97176021       97608883     NR_135564     LOC105373496
18  chr2  110161831      111479630     NM_000272            NPHP1
19  chr2  110161831      111479630  NM_001037866            RGPD6
21  chr2  110161831      111479630  NM_001099289           SH3RF3
24  chr2  110161831      111479630  NM_001205288            LIMS4
26  chr2  110161831      111479630  NM_001321504           SEPT10
28  chr2  110161831      111479630     NM_004336             BUB1
29  chr2  110161831      111479630     NM_005054            RGPD5
31  chr2  110161831      111479630     NM_005434             MALL
32  chr2  110161831      111479630     NM_023016           SOWAHC
33  chr2  110161831      111479630     NR_027063        LINC00116
34  chr2  110161831      111479630     NR_027142        LOC440895
36  chr2  110161831      111479630     NR_027145  LIMS3-LOC440895
38  chr2  110161831      111479630     NR_027244        LINC01106
39  chr2  110161831      111479630     NR_027467            LIMS3
41  chr2  110161831      111479630     NR_036225          MIR4267
42  chr2  110161831      111479630     NR_037626     LOC100507334
43  chr2  110161831      111479630     NR_039941        MIR4436B1
45  chr2  110161831      111479630     NR_046110        LINC01123
47  chr2  110161831      111479630     NR_132975         SNORD132
48  chr2  110161831      111479630     NR_135529     LOC105373553,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr13   54758530       54900993     NR_031628   MIR1297
1  chr14   47846066       47948086  NM_001113498     MDGA2
2   chr5  104398594      104509610     NR_000039   RAB9BP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12813042       13032163  NM_001009611       PRAMEF4
1    chr1   12813042       13032163  NM_001010889       PRAMEF6
2    chr1   12813042       13032163  NM_001010890       PRAMEF9
3    chr1   12813042       13032163  NM_001012276       PRAMEF8
4    chr1   12813042       13032163  NM_001013631      HNRNPCL1
5    chr1   12813042       13032163  NM_001080830      PRAMEF12
6    chr1   12813042       13032163  NM_001146181      HNRNPCL3
7    chr1   12813042       13032163  NM_001146344      PRAMEF11
8    chr1   12813042       13032163  NM_001294139       PRAMEF1
9    chr1   12813042       13032163  NM_001302551      HNRNPCL4
11   chr1   12813042       13032163     NM_023014       PRAMEF2
12   chr1   12813042       13032163     NM_152290      C1orf158
13  chr15   30272804       32510140  NM_001039841     ARHGAP11B
14  chr15   30272804       32510140  NM_001146094          FAN1
16  chr15   30272804       32510140  NM_001190455        CHRNA7
17  chr15   30272804       32510140  NM_001243538     LOC283710
18  chr15   30272804       32510140  NM_001252020         TRPM1
21  chr15   30272804       32510140  NM_001282472       GOLGA8J
22  chr15   30272804       32510140  NM_001282484       GOLGA8R
23  chr15   30272804       32510140  NM_001282490       GOLGA8H
24  chr15   30272804       32510140  NM_001302461         KLF13
25  chr15   30272804       32510140  NM_001329907        OTUD7A
28  chr15   30272804       32510140     NM_017762        MTMR10
30  chr15   30272804       32510140     NM_139320      CHRFAM7A
31  chr15   30272804       32510140     NR_026771  DKFZP434L187
32  chr15   30272804       32510140     NR_026858        ULK4P1
33  chr15   30272804       32510140     NR_026859        ULK4P3
34  chr15   30272804       32510140     NR_029624        MIR211
35  chr15   30272804       32510140     NR_033933       GOLGA8T
36  chr15   30272804       32510140     NR_038253  LOC100288637
38  chr15   30272804       32510140     NR_072991      HERC2P10
39  chr15   30272804       32510140     NR_135834  LOC102725022
40  chr16    6344419        6455261  NM_001308117        RBFOX1
42   chr2  107672733      108990532  NM_001008743       SULT1C3
43   chr2  107672733      108990532     NM_001056       SULT1C2
44   chr2  107672733      108990532  NM_001305006        SLC5A7
46   chr2  107672733      108990532     NM_182588         RGPD4
47   chr2  107672733      108990532     NR_024439     RGPD4-AS1
48   chr2  107672733      108990532     NR_037191     SULT1C2P1
49   chr2  107672733      108990532     NR_049853      MIR548AU
50   chr2  107672733      108990532     NR_126369        GACAT1
52   chr2  107672733      108990532     NR_131251     LINC01594
53   chr2  107672733      108990532     NR_135071     LINC01593
54   chr2  133701148      133816312     NM_207363        NCKAP5
55   chr5  120791586      123708047     NM_000943          PPIC
56   chr5  120791586      123708047  NM_001136239         PRDM6
57   chr5  120791586      123708047  NM_001166226        CEP120
58   chr5  120791586      123708047  NM_001178102           LOX
59   chr5  120791586      123708047  NM_001195535  LOC100505841
60   chr5  120791586      123708047  NM_001270572       CSNK1G3
64   chr5  120791586      123708047     NM_003100          SNX2
65   chr5  120791586      123708047     NM_005460        SNCAIP
66   chr5  120791586      123708047     NM_014035         SNX24
67   chr5  120791586      123708047     NM_152546        SRFBP1
68   chr5  120791586      123708047     NM_177478          FTMT
69   chr5  120791586      123708047     NM_207317        ZNF474
70   chr5  120791586      123708047     NR_051996      MGC32805
71   chr5  120791586      123708047     NR_109881  LOC101927379
72   chr5  120791586      123708047     NR_125774     LINC01170
75   chr5  120791586      123708047     NR_134281  LOC101927357,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr18   24562515       24718475  NM_001256316         CHST9
1   chr2  215491495      215737232     NM_000465         BARD1
2   chr2  215491495      215737232     NR_110292  LOC101928103
3  chr20   14831124       15235916  NM_001033087       MACROD2
5  chr20   14831124       15235916     NR_037841   MACROD2-AS1
7   chr9   28592595       28706330  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr22   19956629       20252801     NM_000754       COMT
3   chr22   19956629       20252801  NM_001190326      DGCR8
4   chr22   19956629       20252801  NM_001243537    CCDC188
5   chr22   19956629       20252801  NM_001278639     RANBP1
8   chr22   19956629       20252801  NM_001283116     TANGO2
11  chr22   19956629       20252801     NM_001670      ARVCF
13  chr22   19956629       20252801     NM_013373     ZDHHC8
14  chr22   19956629       20252801     NM_022727     TRMT2A
15  chr22   19956629       20252801     NM_023004      RTN4R
16  chr22   19956629       20252801     NR_026919  LINC00896
17  chr22   19956629       20252801     NR_029706     MIR185
18  chr22   19956629       20252801     NR_031618    MIR1286
19  chr22   19956629       20252801     NR_031706    MIR1306
20  chr22   19956629       20252801     NR_037412    MIR3618
21  chr22   19956629       20252801     NR_038460  LOC284865
22  chr22   19956629       20252801     NR_106874    MIR6816
23   chr4   94026470       94147319     NM_001510      GRID2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr20   25395385       25602741  NM_001318226      NINL
1  chr20   25395385       25602741     NM_021067     GINS1
2  chr20   25395385       25602741     NM_152667      NANP
3  chr22   17264115       17367040     NM_175878      XKR3
4  chr22   17264115       17367040     NR_003607   HSFY1P1
5   chr5   22772857       22890338     NM_004061     CDH12,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63168641       63457550     NR_047029  LINC00448
3   chr19   33116507       33297342  NM_001105570     NUDT19
4   chr19   33116507       33297342  NM_001110822     TDRD12
5   chr19   33116507       33297342     NM_032139    ANKRD27
6   chr19   33116507       33297342     NM_207391     RGS9BP
7   chr22   17244156       17348439     NM_175878       XKR3
8   chr22   17244156       17348439     NR_003607    HSFY1P1
9    chr3   65801119       66000372  NM_001033057      MAGI1
11   chr3   65801119       66000372     NR_046575  MAGI1-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   83510770       85099375     NM_052910    SLITRK1
1  chr13   83510770       85099375     NR_046871  LINC00333
2   chr2   56581976       56713982  NM_001080433    CCDC85A
3   chr5   99832053       99936950     NM_198507    FAM174A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108396829      108542151     NM_006113          VAV3
1    chr1  108396829      108542151     NR_046653      VAV3-AS1
2    chr1  108396829      108542151     NR_107006       MIR7852
3   chr10   54197626       54353975     NR_120641     LINC01468
5   chr10   84001527       84287695  NM_001010848          NRG3
7    chr2  117991892      118717223     NM_006773         DDX18
8    chr2  117991892      118717223     NM_019044        CCDC93
9    chr4   94130594       94542336     NM_001510         GRID2
10   chr6  162823124      162934574     NM_013988         PARK2
11   chr9   41872028       41984148     NR_003670        FGF7P3
12   chr9   41872028       41984148     NR_015363         GLIDR
15   chr9   44328015       44988143     NR_121564  LOC101927827
16   chr9   44328015       44988143     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   82814386       83013639  NM_001164465     GOLGA6L10
1   chr15   82814386       83013639  NM_001291420      GOLGA6L9
3   chr15   82814386       83013639     NR_026811     GOLGA2P10
4   chr15   82814386       83013639     NR_045529     ADAMTS7P1
5   chr15   82814386       83013639     NR_102747     LOC727751
6   chr15   82814386       83013639     NR_111943         RPS17
8   chr15   82814386       83013639     NR_111962    GOLGA6L17P
9   chr15   82814386       83013639     NR_120378  LOC102724034
10  chr16   15380085       15481788  NM_001277325        NPIPA5
11  chr17   56148025       56297909     NM_000502           EPX
12  chr17   56148025       56297909  NM_001004707         OR4D2
13  chr17   56148025       56297909  NM_001165927          MKS1
15  chr17   56148025       56297909     NM_012374         OR4D1
16  chr17   56148025       56297909     NM_080677        DYNLL2
17  chr17   56148025       56297909     NR_002307        MSX2P1
18  chr17   56148025       56297909     NR_110809  LOC101927666
19   chr3    1868517        2246372     NM_175607         CNTN4
20   chr3    1868517        2246372     NR_046555     CNTN4-AS2
21   chr7   64179696       64345564  NM_001160183        ZNF138,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143563963      143692632     NR_106967       MIR6077
1    chr1  143563963      143692632     NR_111930  LOC100132057
2   chr10   67980270       68226803  NM_001127384        CTNNA3
4   chr19   47811354       48012624  NM_001009813         MEIS3
5   chr19   47811354       48012624  NM_001271749         C5AR2
7   chr19   47811354       48012624  NM_001291296          KPTN
10  chr19   47811354       48012624     NM_001736         C5AR1
11  chr19   47811354       48012624     NM_014681         DHX34
12  chr19   47811354       48012624     NM_015063        SLC8A2
14  chr19   47811354       48012624     NR_038452      NAPA-AS1
15  chr19   47811354       48012624     NR_038457          NAPA
16   chr4   91175483       91714377  NM_001145065        CCSER1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr17     358550         485345  NM_001128159         VPS53
2   chr4  188358598      189676397  NM_001303419        TRIML2
3   chr4  188358598      189676397  NM_001304358         ZFP42
4   chr4  188358598      189676397     NM_178556        TRIML1
5   chr4  188358598      189676397     NR_033869     LINC01060
6   chr4  188358598      189676397     NR_038931     LOC339975
7   chr4  188358598      189676397     NR_110436  LOC100506272,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   19607543       19715894  NM_001142308    MALRD1
1  chr12   27163347       27351965  NM_001080406  C12orf71
2  chr12   27163347       27351965  NM_001271811     MED21
3  chr12   27163347       27351965     NM_016551    TM7SF3
4   chr6  162493791      162715415     NM_013988     PARK2
5   chr8   19798071       19916881     NM_000237       LPL,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   97921249       98026685     NR_024037      RMST
1  chr12   97921249       98026685     NR_029678  MIR135A2
2   chr7   18392526       18534570  NM_001204144     HDAC9,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   42118838       42338687  NM_001346175         LRFN5
1   chr4   88601573       88905008     NM_000582          SPP1
2   chr4   88601573       88905008  NM_001184694          MEPE
4   chr4   88601573       88905008     NM_004967          IBSP
6   chr6  136879290      137002794     NM_005923        MAP3K5
7   chr6  136879290      137002794     NR_125858  LOC101928461,      chrom  cnv_start  cnv_terminate       tx_name        gene_name
0     chr1   12797722       12930134  NM_001013631         HNRNPCL1
1     chr1   12797722       12930134  NM_001080830         PRAMEF12
2     chr1   12797722       12930134  NM_001146181         HNRNPCL3
3     chr1   12797722       12930134  NM_001146344         PRAMEF11
4     chr1   12797722       12930134  NM_001294139          PRAMEF1
5     chr1   12797722       12930134  NM_001302551         HNRNPCL4
7     chr1   12797722       12930134     NM_023014          PRAMEF2
8     chr1   12797722       12930134     NM_152290         C1orf158
9    chr17    3826979        7266914     NM_000080            CHRNE
10   chr17    3826979        7266914     NM_000173            GP1BA
11   chr17    3826979        7266914     NM_000697           ALOX12
12   chr17    3826979        7266914  NM_001001683            MED11
13   chr17    3826979        7266914  NM_001002914           KCTD11
14   chr17    3826979        7266914  NM_001014985           GLTPD2
15   chr17    3826979        7266914  NM_001033053            NLRP1
16   chr17    3826979        7266914     NM_001042           SLC2A4
17   chr17    3826979        7266914  NM_001083585           RABEP1
18   chr17    3826979        7266914  NM_001100812           CXCL16
19   chr17    3826979        7266914  NM_001104577          SLC52A1
20   chr17    3826979        7266914  NM_001105520        C17orf100
21   chr17    3826979        7266914  NM_001114974           SMTNL2
22   chr17    3826979        7266914  NM_001122890             GGT6
23   chr17    3826979        7266914  NM_001124758            SPNS2
24   chr17    3826979        7266914  NM_001128827             DLG4
25   chr17    3826979        7266914     NM_001140           ALOX15
26   chr17    3826979        7266914  NM_001143760            EIF5A
29   chr17    3826979        7266914  NM_001143775          CTDNEP1
30   chr17    3826979        7266914  NM_001143838          SLC13A5
31   chr17    3826979        7266914  NM_001144939             VMO1
32   chr17    3826979        7266914  NM_001145536        C17orf107
..     ...        ...            ...           ...              ...
105  chr17    3826979        7266914     NM_053285            TEKT1
108  chr17    3826979        7266914     NM_153018             ZFP3
109  chr17    3826979        7266914     NM_153230           FBXO39
110  chr17    3826979        7266914     NM_153357         SLC16A11
111  chr17    3826979        7266914     NM_174893         C17orf49
112  chr17    3826979        7266914     NM_174955           ATP2A3
113  chr17    3826979        7266914     NM_181844            BCL6B
115  chr17    3826979        7266914     NM_201566         SLC16A13
117  chr17    3826979        7266914     NR_002710         ALOX12P2
118  chr17    3826979        7266914     NR_027679            RPAIN
120  chr17    3826979        7266914     NR_029712           MIR195
121  chr17    3826979        7266914     NR_029896           MIR324
122  chr17    3826979        7266914     NR_030178           MIR497
123  chr17    3826979        7266914     NR_034082     LOC100130950
124  chr17    3826979        7266914     NR_037716           RNASEK
125  chr17    3826979        7266914     NR_037717  RNASEK-C17orf49
126  chr17    3826979        7266914     NR_038310         MIR497HG
127  chr17    3826979        7266914     NR_039745        MIR4520-1
128  chr17    3826979        7266914     NR_039874        MIR4520-2
129  chr17    3826979        7266914     NR_040000        LOC339166
130  chr17    3826979        7266914     NR_040089       ALOX12-AS1
131  chr17    3826979        7266914     NR_045985         ALOX15P1
132  chr17    3826979        7266914     NR_046398             XAF1
133  chr17    3826979        7266914     NR_103482     LOC101559451
134  chr17    3826979        7266914     NR_106924          MIR6864
135  chr17    3826979        7266914     NR_106925          MIR6865
136  chr17    3826979        7266914     NR_110982     LOC103021295
138  chr17    3826979        7266914     NR_120665     LOC102724009
139  chr17    3826979        7266914     NR_135644     LOC105371506
140  chr17    3826979        7266914     NR_135658     LOC101928000

[112 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   90871564       91162634     NR_030754     MIR622
1  chr13   90871564       91162634     NR_120414  LINC01049
2  chr17   64554388       64669006     NM_002737      PRKCA
3  chr18   14740566       15024188  NM_001145029   ANKRD30B
4  chr18   14740566       15024188     NR_036153  MIR3156-2
5  chr18   14740566       15024188     NR_104164  LINC01443
6  chr18   14740566       15024188     NR_110783  LINC01444
7   chr9   41565030       41666645     NR_003528    ZNF658B,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  244986487      245237075  NM_001143943        EFCAB2
2  chr1  244986487      245237075  NM_001312871         COX20
4  chr1  244986487      245237075     NM_004501        HNRNPU
7  chr1  244986487      245237075     NR_111907  LOC101928068
8  chr1  244986487      245237075     NR_132782      SNORA100,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67863339       67989305  NM_001127384        CTNNA3
2    chr2   34652163       35030018     NR_126404     LINC01320
3    chr6  162580280      162684694     NM_013988         PARK2
4    chr7   24318609       24486898     NM_000905           NPY
5    chr7  124912114      125422664     NR_110188  LOC101928283
6    chr8    7124008        7617823  NM_001040705      DEFB107B
7    chr8    7124008        7617823  NM_001081551      DEFB103A
8    chr8    7124008        7617823  NM_001164457       ZNF705G
9    chr8    7124008        7617823  NM_001205266        DEFB4B
10   chr8    7124008        7617823  NM_001256873       USP17L1
11   chr8    7124008        7617823  NM_001256874       USP17L4
12   chr8    7124008        7617823  NM_001282478       PRR23D2
13   chr8    7124008        7617823  NM_001282479       PRR23D1
14   chr8    7124008        7617823     NM_058200       SPAG11B
18   chr8    7124008        7617823     NM_080389      DEFB104A
19   chr8    7124008        7617823     NM_152250      DEFB105A
20   chr8    7124008        7617823     NM_152251      DEFB106A
21   chr8    7124008        7617823     NR_003668    DEFB109P1B
22   chr8    7124008        7617823     NR_027000     LINC00965
24   chr8    7124008        7617823     NR_027423        FAM66B
25   chr8    7124008        7617823     NR_046343      FAM90A7P,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  143752667      143900487  NM_001123068   PPIAL4G
1  chr1  143752667      143900487  NM_001287385    FAM72C
2  chr1  143752667      143900487  NM_001345942    FAM72D
6  chr7  110919605      111070246  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr19   47780725       47921741  NM_001009813        MEIS3
1   chr19   47780725       47921741  NM_001271749        C5AR2
5   chr19   47780725       47921741     NM_001736        C5AR1
6   chr19   47780725       47921741     NM_014681        DHX34
8   chr20   14670831       14894885     NM_080676      MACROD2
9   chr20   14670831       14894885     NR_037841  MACROD2-AS1
11   chr5     111663         335762  NM_001080478      LRRC14B
12   chr5     111663         335762  NM_001242412         AHRR
13   chr5     111663         335762     NM_004168         SDHA
14   chr5     111663         335762     NM_013232        PDCD6
15   chr5     111663         335762     NM_052909     PLEKHG4B
16   chr5     111663         335762     NM_145265      CCDC127
18   chr5     111663         335762     NR_104613        HRAT5
19   chr9    2475041        2611443     NR_015375    VLDLR-AS1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1  142558011      142719123     NR_046228  ANKRD20A12P
1  chr10   67963183       68067867  NM_001127384       CTNNA3
3  chr12   27183868       27334504  NM_001080406     C12orf71
4   chr7    4277607        4497381  NM_001079653         SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81490751       81761946     NM_003019         SFTPD
1   chr10   81490751       81761946     NR_002724         MBL1P
2   chr10   81490751       81761946     NR_029407     LOC642361
3   chr10   81490751       81761946     NR_033857       BMS1P21
4   chr10   81490751       81761946     NR_120611    NUTM2B-AS1
7   chr15   58852245       58971331     NM_000236          LIPC
8   chr15   58852245       58971331     NM_001110        ADAM10
9   chr16   21493115       21666219  NM_001077180        METTL9
11  chr16   21493115       21666219     NM_005849         IGSF6
12  chr16   21493115       21666219     NR_002594      SLC7A5P2
13  chr16   21493115       21666219     NR_027155        SMG1P3
14  chr16   21493115       21666219     NR_049833     MIR3680-2
15  chr16   21493115       21666219     NR_110930  LOC101927814
16   chr7   93225257       93629288  NM_001317739          BET1
17   chr7   93225257       93629288     NM_004126         GNG11
18   chr7   93225257       93629288     NM_006528         TFPI2
19   chr7   93225257       93629288     NM_021955         GNGT1
20   chr7   93225257       93629288     NR_039796       MIR4652
22   chr7   93225257       93629288     NR_134235  LOC105375401
23   chr8  111824172      112077534     NR_125416     LINC01608,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   49084529       49225726  NM_001302082         BEND5
1   chr1   49084529       49225726  NM_001323575         AGBL4
2   chr1   87405519       87539546  NM_001134492        HS2ST1
4   chr8    8382593        9690552  NM_001201329       PPP1R3B
5   chr8    8382593        9690552     NM_003747          TNKS
6   chr8    8382593        9690552     NM_004225        MFHAS1
8   chr8    8382593        9690552     NM_153332          ERI1
9   chr8    8382593        9690552     NM_194284        CLDN23
10  chr8    8382593        9690552     NR_030327        MIR597
11  chr8    8382593        9690552     NR_039804       MIR4660
12  chr8    8382593        9690552     NR_040039     LOC157273
13  chr8    8382593        9690552     NR_125431  LOC101929128,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   19595993       19730478  NM_001142308        MALRD1
1   chr13   86275906       86519547     NM_032229       SLITRK6
2   chr15   59917538       60049832  NM_001320674         BNIP2
4   chr15   59917538       60049832  NM_001320929        GTF2A2
7   chr22   20583752       20871707  NM_001256523         ZNF74
8   chr22   20583752       20871707  NM_001293236         MED15
10  chr22   20583752       20871707     NM_153334        SCARF2
11  chr22   20583752       20871707     NR_033825        KLHL22
12  chr22   20583752       20871707     NR_136569     LOC729461
13  chr22   20583752       20871707     NR_136572  LOC101927859
14   chr3    4005757        4547018  NM_001164675         SUMF1
15   chr3    4005757        4547018  NM_001168272         ITPR1
16   chr3    4005757        4547018  NM_001243723        SETMAR
18   chr3    4005757        4547018     NR_108075     ITPR1-AS1
19   chr6  129288167      129538903  NM_001079823         LAMA2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    7778762        9625156     NM_000990        RPL27A
1   chr11    7778762        9625156  NM_001003745        OR10A3
2   chr11    7778762        9625156  NM_001004461        OR10A6
3   chr11    7778762        9625156  NM_001135109          RIC3
4   chr11    7778762        9625156  NM_001143976          WEE1
5   chr11    7778762        9625156  NM_001165030       TMEM41B
6   chr11    7778762        9625156  NM_001243254       DENND5A
7   chr11    7778762        9625156  NM_001270428          LMO1
8   chr11    7778762        9625156  NM_001282656        ZNF143
9   chr11    7778762        9625156  NM_001286094        TMEM9B
11  chr11    7778762        9625156  NM_001289059         STK33
13  chr11    7778762        9625156  NM_001330199        SCUBE2
14  chr11    7778762        9625156     NM_003320           TUB
16  chr11    7778762        9625156     NM_003754         EIF3F
17  chr11    7778762        9625156     NM_005418           ST5
18  chr11    7778762        9625156     NM_006391          IPO7
19  chr11    7778762        9625156     NM_014818        TRIM66
21  chr11    7778762        9625156     NM_020642         AKIP1
22  chr11    7778762        9625156     NM_020643      C11orf16
23  chr11    7778762        9625156     NM_020645         NRIP3
24  chr11    7778762        9625156     NM_020646         ASCL3
27  chr11    7778762        9625156     NM_153444         OR5P2
28  chr11    7778762        9625156     NM_153445         OR5P3
29  chr11    7778762        9625156     NM_176821        NLRP10
32  chr11    7778762        9625156     NR_002580       SNORA3A
33  chr11    7778762        9625156     NR_002962       SNORA23
34  chr11    7778762        9625156     NR_002977       SNORA3B
35  chr11    7778762        9625156     NR_027711        OR5E1P
36  chr11    7778762        9625156     NR_027713       KRT8P41
37  chr11    7778762        9625156     NR_036539     LOC644656
..    ...        ...            ...           ...           ...
62  chr17   48069353       49121631     NM_001267          CHAD
63  chr17   48069353       49121631  NM_001288968         ACSF2
64  chr17   48069353       49121631  NM_001330330        LUC7L3
65  chr17   48069353       49121631  NM_001330341       WFIKKN2
66  chr17   48069353       49121631     NM_002204         ITGA3
70  chr17   48069353       49121631     NM_005220          DLX3
72  chr17   48069353       49121631     NM_016504        MRPL27
73  chr17   48069353       49121631     NM_017957          EPN3
74  chr17   48069353       49121631     NM_018346         RSAD1
75  chr17   48069353       49121631     NM_018509        LRRC59
76  chr17   48069353       49121631     NM_018896       CACNA1G
77  chr17   48069353       49121631     NM_022167         XYLT2
78  chr17   48069353       49121631     NM_032133       MYCBPAP
79  chr17   48069353       49121631     NM_032595       PPP1R9B
80  chr17   48069353       49121631     NM_052855       ANKRD40
83  chr17   48069353       49121631     NR_024193         HILS1
84  chr17   48069353       49121631     NR_038230     LOC284080
85  chr17   48069353       49121631     NR_038439   CACNA1G-AS1
86  chr17   48069353       49121631     NR_038458      TOB1-AS1
87  chr17   48069353       49121631     NR_073199     LINC00483
88  chr17   48069353       49121631     NR_107026       MIR8059
90  chr17   48069353       49121631     NR_110806  LOC101927230
91  chr17   48069353       49121631     NR_125805    TMEM92-AS1
92  chr17   48069353       49121631     NR_135553          SGCA
93  chr17   48069353       49121631     NR_135675  LOC105371824
94   chr2  108825987      108944430  NM_001008743       SULT1C3
95   chr2  108825987      108944430     NM_001056       SULT1C2
97   chr2  108825987      108944430     NR_037191     SULT1C2P1
98   chr2  108825987      108944430     NR_131251     LINC01594
99   chr4   30700139       30901409  NM_001173523         PCDH7

[76 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr18   19152814       19258416  NM_001291916        SNRPD1
1  chr18   19152814       19258416  NM_001308256         ABHD3
3  chr18   19152814       19258416     NM_052911         ESCO1
4   chr7   64071894       64233672  NM_001282360        ZNF107
5   chr7   64071894       64233672     NR_077227  LOC100128885
7   chr7   64071894       64233672     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   19568908       19676854  NM_001142308    MALRD1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10    6756070        6882657     NR_038291     LINC00707
1  chr10    6756070        6882657     NR_108074     LINC00706
2  chr10    6756070        6882657     NR_138480         LINP1
3  chr13   63377762       63863022     NR_120403     LINC00448
4  chr13   63377762       63863022     NR_126409     LINC00376
5  chr20   40539089       40850293     NM_133170         PTPRT
6   chr7   63942561       64054077  NM_001130022        ZNF680
8   chr7   63942561       64054077     NR_033245     LOC641746
9   chr7   63942561       64054077     NR_077227  LOC100128885,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  233713874      233827064     NM_002245      KCNK1
1   chr1  233713874      233827064     NR_039625    MIR4427
2  chr12    5057643        5203430     NM_002234      KCNA5
3  chr13   22387307       22642276     NR_047040  LINC00424
4  chr14   42081603       42205550  NM_001346175      LRFN5,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48279491       48518188  NM_001004702     OR4C3
1  chr11   48279491       48518188  NM_001004725     OR4S1
2  chr11   48279491       48518188  NM_001004726     OR4X1
3  chr11   48279491       48518188  NM_001005512    OR4A47
4  chr11   48279491       48518188  NM_001005513    OR4C45
5   chr6  155403818      155518023     NM_012454     TIAM2,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr4   66442088       66817447  NM_001281766      EPHA5
3  chr4   66442088       66817447     NR_034138  EPHA5-AS1,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0   chr1  185893588      186015122  NM_031935         HMCN1
1  chr13   19684183       19795699  NM_006001        TUBA3C
2  chr13   19684183       19795699  NR_126054  LOC101928697
3  chr19   20298103       20410986  NM_052852        ZNF486
4  chr20   40544732       40827703  NM_133170         PTPRT,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67648859       67748923  NM_001127384     CTNNA3
2   chr15   28637870       28811843     NR_033351    GOLGA8F
3   chr15   28637870       28811843     NR_033353    GOLGA8G
4   chr15   28637870       28811843     NR_039734  MIR4509-3
6   chr20    5191205        5359184     NM_144773     PROKR2
7    chr3  160050316      160880531  NM_001190241      IFT80
9    chr3  160050316      160880531  NM_001288753       SMC4
10   chr3  160050316      160880531  NM_001317912      PPM1L
11   chr3  160050316      160880531     NM_002268      KPNA4
12   chr3  160050316      160880531     NM_003781   B3GALNT1
14   chr3  160050316      160880531     NM_025047      ARL14
17   chr3  160050316      160880531     NM_173084     TRIM59
18   chr3  160050316      160880531     NR_003001    SCARNA7
19   chr3  160050316      160880531     NR_029525    MIR16-2
20   chr3  160050316      160880531     NR_029663     MIR15B
22   chr7   83048528       83216817  NM_001178129     SEMA3E,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   51063396       51402880  NM_001330079         NRXN1
3  chr2   51063396       51402880     NR_135237     LOC730100
4  chr7   64043380       64173424  NM_001282360        ZNF107
5  chr7   64043380       64173424     NR_033245     LOC641746
6  chr7   64043380       64173424     NR_077227  LOC100128885
8  chr7   64043380       64173424     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  245022216      245225235  NM_001143943        EFCAB2
2   chr1  245022216      245225235     NM_004501        HNRNPU
4   chr1  245022216      245225235     NR_111907  LOC101928068
5  chr15   28541602       28643377     NM_004667         HERC2
6  chr15   28541602       28643377     NR_033351       GOLGA8F
7  chr15   28541602       28643377     NR_033353       GOLGA8G
8   chr7  133211698      133362053     NM_021807         EXOC4,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   16598556       16721680  NM_001114600     SZRD1
1    chr1   16598556       16721680     NM_018994    FBXO42
2   chr14   21876232       22082458  NM_001005465    OR10G3
3   chr14   21876232       22082458  NM_001163380     RAB2B
4   chr14   21876232       22082458  NM_001170629      CHD8
5   chr14   21876232       22082458  NM_001303523      TOX4
6   chr14   21876232       22082458     NM_019852    METTL3
9   chr14   21876232       22082458     NR_111966     SALL2
11   chr6  130128158      130428016  NM_001007102   L3MBTL3
12   chr6  130128158      130428016  NM_001010876   TMEM244
15   chr6  162715631      162873702     NM_013988     PARK2,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr10    7174885        7356771  NM_001018039        SFMBT2
2    chr10    7174885        7356771     NR_132972      SNORD129
3    chr11    1146998        3809203     NM_000218         KCNQ1
4    chr11    1146998        3809203     NM_000360            TH
5    chr11    1146998        3809203     NM_000612          IGF2
6    chr11    1146998        3809203  NM_001001480      KRTAP5-5
7    chr11    1146998        3809203  NM_001004325      KRTAP5-2
8    chr11    1146998        3809203  NM_001005922      KRTAP5-1
10   chr11    1146998        3809203  NM_001012416      KRTAP5-6
11   chr11    1146998        3809203  NM_001012708      KRTAP5-3
12   chr11    1146998        3809203  NM_001012709      KRTAP5-4
13   chr11    1146998        3809203  NM_001013253          LSP1
16   chr11    1146998        3809203  NM_001039165        MRGPRE
17   chr11    1146998        3809203  NM_001042376      INS-IGF2
18   chr11    1146998        3809203  NM_001122631        CDKN1C
20   chr11    1146998        3809203  NM_001145829         TNNI2
22   chr11    1146998        3809203  NM_001164377        MRGPRG
23   chr11    1146998        3809203  NM_001170820       IFITM10
24   chr11    1146998        3809203  NM_001172223          MOB2
25   chr11    1146998        3809203  NM_001185097           INS
27   chr11    1146998        3809203  NM_001256627         BRSK2
32   chr11    1146998        3809203  NM_001293171          HOTS
33   chr11    1146998        3809203  NM_001297649          CD81
34   chr11    1146998        3809203  NM_001297658         TSSC4
36   chr11    1146998        3809203  NM_001302862    SLC22A18AS
37   chr11    1146998        3809203  NM_001304359        MUC5AC
38   chr11    1146998        3809203  NM_001315501      SLC22A18
39   chr11    1146998        3809203  NM_001318512        TOLLIP
41   chr11    1146998        3809203  NM_001329958      C11orf21
42   chr11    1146998        3809203     NM_001751          CARS
..     ...        ...            ...           ...           ...
76   chr11    1146998        3809203     NR_026643        FAM99A
77   chr11    1146998        3809203     NR_027138    MRGPRG-AS1
78   chr11    1146998        3809203     NR_028043       IGF2-AS
79   chr11    1146998        3809203     NR_029409    TOLLIP-AS1
80   chr11    1146998        3809203     NR_030158        MIR483
81   chr11    1146998        3809203     NR_030533        MIR675
82   chr11    1146998        3809203     NR_036185       MIR4298
83   chr11    1146998        3809203     NR_039834       MIR4686
84   chr11    1146998        3809203     NR_040083        ZNF195
85   chr11    1146998        3809203     NR_044999       OR7E12P
86   chr11    1146998        3809203     NR_106802       MIR6744
87   chr11    1146998        3809203     NR_107001       MIR7847
88   chr11    1146998        3809203     NR_108080      CD81-AS1
89   chr11    1146998        3809203     NR_120534     LINC01150
90   chr11    1146998        3809203     NR_123732          ART5
91   chr11    1146998        3809203     NR_126335  LOC101927708
92   chr11    1146998        3809203     NR_126400     LINC01219
93   chr11    1146998        3809203     NR_130721     KCNQ1-AS1
95   chr11    1146998        3809203     NR_132974      SNORD131
97   chr11   30220283       30426603     NM_000510          FSHB
98   chr11   30220283       30426603  NM_001145399        MPPED2
99   chr11   30220283       30426603     NM_152316       ARL14EP
100  chr22   20616828       20765903  NM_001256523         ZNF74
101  chr22   20616828       20765903     NR_136569     LOC729461
102  chr22   20616828       20765903     NR_136572  LOC101927859
103   chr3  160033243      160172404  NM_001190241         IFT80
105   chr3  160033243      160172404  NM_001288753          SMC4
107   chr3  160033243      160172404     NM_173084        TRIM59
108   chr3  160033243      160172404     NR_029525       MIR16-2
109   chr3  160033243      160172404     NR_029663        MIR15B

[84 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   28375938       28591839     NM_000086          CLN3
2   chr16   28375938       28591839  NM_001042483         NUPR1
3   chr16   28375938       28591839  NM_001199142         EIF3C
8   chr16   28375938       28591839  NM_001317857        EIF3CL
9   chr16   28375938       28591839     NM_018690         APOBR
10  chr16   28375938       28591839     NM_138414         SGF29
11  chr16   28375938       28591839     NM_145659          IL27
12  chr16   28375938       28591839     NR_107058     MIR6862-2
13   chr2   51217693       51337404  NM_001330079         NRXN1
16   chr2   51217693       51337404     NR_135237     LOC730100
17   chr2   56612595       57311305  NM_001080433       CCDC85A
18   chr2  110151776      110281820  NM_001099289        SH3RF3
19   chr7   16517369       16929111  NM_001159767          BZW2
20   chr7   16517369       16929111  NM_001195280        LRRC72
21   chr7   16517369       16929111     NM_006408          AGR2
22   chr7   16517369       16929111     NM_014399       TSPAN13
23   chr7   16517369       16929111     NM_020319        ANKMY2
24   chr7   16517369       16929111     NM_176813          AGR3
25   chr9   39028605       39134355     NM_033655       CNTNAP3
26   chr9   41463400       42195057  NM_001113541     SPATA31A5
27   chr9   41463400       42195057     NM_015667     SPATA31A7
28   chr9   41463400       42195057     NR_003528       ZNF658B
29   chr9   41463400       42195057     NR_003670        FGF7P3
30   chr9   41463400       42195057     NR_015363         GLIDR
31   chr9   41463400       42195057     NR_026803       FAM74A1
34   chr9   41463400       42195057     NR_126048  LOC102724238
35   chr9   41463400       42195057     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   21544317       21764874  NM_001077180        METTL9
1  chr16   21544317       21764874  NM_001161683          OTOA
3  chr16   21544317       21764874     NM_005849         IGSF6
6  chr16   21544317       21764874     NR_110930  LOC101927814
7  chr20   14911132       15059934     NM_080676       MACROD2
8   chr5  124901381      125002996     NR_109887  LOC101927460,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   15023582       15182973  NM_001270767         NTAN1
1   chr16   15023582       15182973  NM_001285445        PDXDC1
6   chr16   15023582       15182973  NM_001301064          RRN3
8   chr16   15023582       15182973     NM_006985        NPIPA1
9   chr16   15023582       15182973     NR_107060     MIR6770-2
10   chr2   75886858       76060542  NM_001201334         GCFC2
13   chr2   75886858       76060542     NM_014763        MRPL19
14   chr7   64068473       64271865  NM_001160183        ZNF138
15   chr7   64068473       64271865  NM_001282360        ZNF107
17   chr7   64068473       64271865     NR_077227  LOC100128885
19   chr7   64068473       64271865     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   31356949       31498993  NM_001304274       IMMP1L
1   chr11   31356949       31498993     NM_181706      DNAJC24
2   chr11   31356949       31498993     NM_181807        DCDC1
3   chr12   71482817       72825926  NM_001277227         LGR5
4   chr12   71482817       72825926     NM_004616       TSPAN8
5   chr12   71482817       72825926     NM_013381        TRHDE
6   chr12   71482817       72825926     NM_014999        RAB21
7   chr12   71482817       72825926     NM_018279       TMEM19
8   chr12   71482817       72825926     NM_031435        THAP2
9   chr12   71482817       72825926     NM_144982       ZFC3H1
10  chr12   71482817       72825926     NM_173353         TPH2
11  chr12   71482817       72825926     NR_024072       MRS2P2
12  chr12   71482817       72825926     NR_026836    TRHDE-AS1
14  chr12   71482817       72825926     NR_027449      TBC1D15
15  chr15   52726901       52872094  NM_001142495        MYO5A
16  chr15   52726901       52872094  NM_001306191       ARPP19
20  chr17     406041         527149  NM_001128159        VPS53
22  chr20   14804616       14922390     NM_080676      MACROD2
23  chr20   14804616       14922390     NR_037841  MACROD2-AS1
25   chr3  131179837      131302961  NM_001289112        CPNE4
26   chr3  131179837      131302961     NM_007208        MRPL3
29   chr3  131179837      131302961     NR_002985      SNORA58
30   chr4  121675217      121826193     NM_018699        PRDM5
31   chr7   82904557       83016858  NM_001178129       SEMA3E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27657427       27771679  NM_001034842        PTCHD3
1   chr11   64941559       65080445  NM_001004326      SLC22A20
2   chr11   64941559       65080445  NM_001198868         CAPN1
4   chr11   64941559       65080445     NM_002689         POLA2
7    chr4  169238052      169394707  NM_001012967        DDX60L
9    chr4  169238052      169394707     NM_017631         DDX60
10   chr4  189463663      189760168     NR_033869     LINC01060
11   chr9   41907421       42025437     NR_003670        FGF7P3
12   chr9   41907421       42025437     NR_015363         GLIDR
15   chr9   41907421       42025437     NR_126048  LOC102724238
16   chr9   41907421       42025437     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1  102424716      102820164     NR_110211        OLFM3
1   chr2   25228701       25494145  NM_001319099        EFR3B
2   chr2   25228701       25494145  NM_001319205         POMC
3   chr2   25228701       25494145  NM_001320893       DNMT3A
8   chr2   25228701       25494145     NR_034113  DNAJC27-AS1
9   chr2   25228701       25494145     NR_132378    LINC01381
10  chr2   96021452       96133469  NM_001034914       KCNIP3
12  chr2   96021452       96133469     NM_016044       FAHD2A
13  chr6   89482788       90073943  NM_001010853       PM20D2
14  chr6   89482788       90073943  NM_001256703       GABRR1
16  chr6   89482788       90073943  NM_001286428        RNGTT
17  chr6   89482788       90073943     NM_002043       GABRR2
18  chr6   89482788       90073943     NM_006813        PNRC1
19  chr6   89482788       90073943     NM_016021       UBE2J1
20  chr6   89482788       90073943     NM_080743       SRSF12
21  chr6   94369925       94472894     NR_015362         TSG1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  177010698      177148381  NM_001286164         ASTN1
2    chr1  177010698      177148381     NM_021165        BRINP2
4    chr1  245057962      245316146  NM_001143943        EFCAB2
7    chr1  245057962      245316146     NR_111907  LOC101928068
8   chr10   67903938       68171761  NM_001127384        CTNNA3
10  chr15   28287572       28651201     NM_000275          OCA2
12  chr15   28287572       28651201     NM_004667         HERC2
13  chr15   28287572       28651201     NR_033351       GOLGA8F
14  chr15   28287572       28651201     NR_033353       GOLGA8G
15  chr15   28621400       28837854     NR_033351       GOLGA8F
17  chr15   28621400       28837854     NR_033353       GOLGA8G
19  chr15   28621400       28837854     NR_039734     MIR4509-3
21  chr19   33093350       33336139  NM_001105570        NUDT19
22  chr19   33093350       33336139  NM_001110822        TDRD12
23  chr19   33093350       33336139     NM_014270        SLC7A9
24  chr19   33093350       33336139     NM_032139       ANKRD27
25  chr19   33093350       33336139     NM_207391        RGS9BP
26  chr21   17855124       18008835     NR_027790      MIR99AHG
28  chr21   17855124       18008835     NR_029480      MIRLET7C
29  chr21   17855124       18008835     NR_029514        MIR99A
30  chr21   17855124       18008835     NR_029694      MIR125B2
39   chr4    8625767        8847907  NM_001306142          HMX1
40   chr7  110687560      110881267  NM_001099658         LRRN3
41   chr7  110687560      110881267  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr16   21727330       22604785  NM_001135865      NPIPB5
1   chr16   21727330       22604785  NM_001161683        OTOA
2   chr16   21727330       22604785  NM_001164579    C16orf52
3   chr16   21727330       22604785  NM_001258033      POLR3E
4   chr16   21727330       22604785  NM_001310148      NPIPB4
5   chr16   21727330       22604785     NM_001802        CDR2
6   chr16   21727330       22604785     NM_003366      UQCRC2
7   chr16   21727330       22604785     NM_013302       EEF2K
10  chr16   21727330       22604785     NM_173615       VWA3A
11  chr16   21727330       22604785     NM_173806       PDZD9
12  chr16   21727330       22604785     NR_003370      RRN3P1
13  chr16   21727330       22604785     NR_003676   LOC653786
14  chr16   21727330       22604785     NR_027154      SMG1P1
15  chr16   21727330       22604785     NR_027460      RRN3P3
16  chr16   21727330       22604785     NR_136333     MFSD13B
17  chr18    1681863        3032221  NM_001308401      METTL4
18  chr18    1681863        3032221     NM_006101       NDC80
19  chr18    1681863        3032221     NM_014646       LPIN2
20  chr18    1681863        3032221     NM_015295      SMCHD1
21  chr18    1681863        3032221     NM_032048     EMILIN2
22  chr18    1681863        3032221     NR_026659   LOC727896
23  chr18    1681863        3032221     NR_033754      CBX3P2
24  chr20   23327398       23583248  NM_001008693        CST9
25  chr20   23327398       23583248  NM_001283018        NAPB
26  chr20   23327398       23583248  NM_001317019        GZF1
27  chr20   23327398       23583248     NM_005492        CST8
28  chr20   23327398       23583248     NM_013248        NXT1
30  chr20   23327398       23583248     NM_080610       CST9L
31  chr20   23327398       23583248     NM_080830       CST11
32  chr20   23327398       23583248     NM_138283       CSTL1
33  chr20   23327398       23583248     NR_001279      CST13P
34  chr20   23327398       23583248     NR_109884   LINC01431
35   chr8    6940554        7242647  NM_001164457     ZNF705G
36   chr8    6940554        7242647  NM_001256873     USP17L1
37   chr8    6940554        7242647  NM_001256874     USP17L4
38   chr8    6940554        7242647     NR_003668  DEFB109P1B
39   chr8    6940554        7242647     NR_027000   LINC00965
42   chr8    6940554        7242647     NR_027423      FAM66B,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   75858353       75969626  NM_001110199     SRRM3
1  chr7   75858353       75969626     NM_001540     HSPB1
2  chr7   75858353       75969626     NM_012479     YWHAG
3  chr9   41876783       42001506     NR_003670    FGF7P3
4  chr9   41876783       42001506     NR_015363     GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  237551747      237664361     NM_001035          RYR2
1    chr1  237551747      237664361     NR_039626       MIR4428
2   chr10   68622373       68966424  NM_001127384        CTNNA3
5   chr10   68622373       68966424     NM_178011        LRRTM3
7   chr10   68622373       68966424     NR_111911  LOC101928961
8   chr13   86027747       86526217     NM_032229       SLITRK6
9   chr13   86027747       86526217     NR_046989     LINC00351
10  chr15   98187652       98303060     NR_024172     LINC00923
11  chr20   14826332       15417561  NM_001033087       MACROD2
13  chr20   14826332       15417561     NR_037841   MACROD2-AS1
15   chr3     298658         408627  NM_001253387          CHL1
17   chr3     298658         408627     NR_110739      CHL1-AS1
18   chr6  130098996      130226834  NM_001010876       TMEM244
19   chr7   75913727       76023539  NM_001110199         SRRM3
20   chr7   75913727       76023539     NM_001540         HSPB1
21   chr7   75913727       76023539     NM_012479         YWHAG
22   chr7   75913727       76023539     NM_080744         SSC4D,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63170691       63476818     NR_047029  LINC00448
3   chr16   61819537       61953892     NM_001796       CDH8
4    chr5   66231302       66644418  NM_001164664      MAST4
8    chr5   66231302       66644418     NM_005582      CD180
10   chr5   66231302       66644418     NR_111908  MAST4-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  128303897      128797712  NM_001290223      DOCK1
1   chr15   20669485       22012594  NM_001145004   GOLGA6L6
2   chr15   20669485       22012594  NM_001277303     POTEB2
3   chr15   20669485       22012594     NM_207355     POTEB3
4   chr15   20669485       22012594     NR_027053  LOC646214
5   chr15   20669485       22012594     NR_027411   GOLGA8CP
6   chr15   20669485       22012594     NR_027992     NBEAP1
7   chr15   20669485       22012594     NR_028506      NF1P2
8   chr15   20669485       22012594     NR_036062  MIR3118-2
9   chr15   20669485       22012594     NR_036432    HERC2P3
10  chr15   20669485       22012594     NR_040094  LINC01193
11  chr15   20669485       22012594     NR_049895  MIR5701-2
13  chr19   47785046       47905858  NM_001271749      C5AR2
15  chr19   47785046       47905858     NM_001736      C5AR1
16  chr19   47785046       47905858     NM_014681      DHX34
18   chr2   51652512       51887650     NR_135237  LOC730100
19   chr3    1169560        1527314  NM_001289081      CNTN6
20   chr4  165963298      166073384  NM_001100389    TMEM192,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  165214803      165327339  NM_001174069      LMX1A
2   chr15  100090761      100354450  NM_001130928      MEF2A
3   chr15  100090761      100354450  NM_001284417     LYSMD4
6   chr15  100090761      100354450     NR_003260    DNM1P46
7   chr15  100090761      100354450     NR_135737  LOC400464
8   chr16   21790160       21960230  NM_001310148     NPIPB4
9   chr16   21790160       21960230     NR_003370     RRN3P1
10   chr4   87969311       88136420  NM_001166693       AFF1
11   chr4   87969311       88136420  NM_001292003      KLHL8,     chrom  cnv_start  cnv_terminate       tx_name           gene_name
0    chr1   12799496       13774862  NM_001009611             PRAMEF4
1    chr1   12799496       13774862  NM_001010889             PRAMEF6
3    chr1   12799496       13774862  NM_001010890             PRAMEF9
4    chr1   12799496       13774862  NM_001012276             PRAMEF8
7    chr1   12799496       13774862  NM_001013407             PRAMEF5
9    chr1   12799496       13774862  NM_001013631            HNRNPCL1
10   chr1   12799496       13774862  NM_001024661            PRAMEF14
12   chr1   12799496       13774862  NM_001039361            PRAMEF10
14   chr1   12799496       13774862  NM_001080830            PRAMEF12
15   chr1   12799496       13774862  NM_001098376            PRAMEF15
17   chr1   12799496       13774862  NM_001099790            PRAMEF19
19   chr1   12799496       13774862  NM_001099850            PRAMEF18
21   chr1   12799496       13774862  NM_001099851            PRAMEF17
23   chr1   12799496       13774862  NM_001099852            PRAMEF20
25   chr1   12799496       13774862  NM_001100631            PRAMEF22
27   chr1   12799496       13774862  NM_001136561            HNRNPCL2
28   chr1   12799496       13774862  NM_001146181            HNRNPCL3
29   chr1   12799496       13774862  NM_001146344            PRAMEF11
30   chr1   12799496       13774862  NM_001291381           PRAMEF33P
32   chr1   12799496       13774862  NM_001294139             PRAMEF1
33   chr1   12799496       13774862  NM_001300891            PRAMEF27
36   chr1   12799496       13774862  NM_001302551            HNRNPCL4
37   chr1   12799496       13774862  NM_001306072            PRAMEF26
38   chr1   12799496       13774862  NM_001310134            PRAMEF25
40   chr1   12799496       13774862     NM_023014             PRAMEF2
41   chr1   12799496       13774862     NM_152290            C1orf158
42   chr1   12799496       13774862     NR_111945           PRAMEF36P
44  chr16   28743248       28899208  NM_001145795               SH2B1
46  chr16   28743248       28899208  NM_001199142               EIF3C
47  chr16   28743248       28899208  NM_001286075              ATP2A1
49  chr16   28743248       28899208  NM_001287251              NPIPB9
51  chr16   28743248       28899208  NM_001317856              EIF3CL
52  chr16   28743248       28899208     NM_003321                TUFM
55  chr16   28743248       28899208     NM_148416              ATXN2L
56  chr16   28743248       28899208     NR_039872             MIR4721
57  chr16   28743248       28899208     NR_046287          ATP2A1-AS1
58   chr7   84741911       84862723     NM_152754              SEMA3D
59   chr9   64620572       67170492  NM_001113541           SPATA31A5
60   chr9   64620572       67170492     NM_015667           SPATA31A7
61   chr9   64620572       67170492     NR_024496  PTGER4P2-CDK2AP2P2
62   chr9   64620572       67170492     NR_026802             FAM74A4
63   chr9   64620572       67170492     NR_026803             FAM74A1
64   chr9   64620572       67170492     NR_046175           LOC286297
65   chr9   64620572       67170492     NR_121570        LOC101928381
66   chr9   64620572       67170492     NR_121647           LINC01410
67   chr9   64620572       67170492     NR_122076           LOC403323
69   chr9   64620572       67170492     NR_126047           LOC728673
71   chr9   64620572       67170492     NR_135128        LOC100132249
72   chr9   64620572       67170492     NR_135597        LOC101928195
73   chr9   64620572       67170492     NR_136299        LOC101929583,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12772298       13049572  NM_001009611       PRAMEF4
1    chr1   12772298       13049572  NM_001010889       PRAMEF6
2    chr1   12772298       13049572  NM_001010890       PRAMEF9
3    chr1   12772298       13049572  NM_001012276       PRAMEF8
4    chr1   12772298       13049572  NM_001013631      HNRNPCL1
5    chr1   12772298       13049572  NM_001080830      PRAMEF12
6    chr1   12772298       13049572  NM_001099850      PRAMEF18
7    chr1   12772298       13049572  NM_001100631      PRAMEF22
8    chr1   12772298       13049572  NM_001103170       AADACL3
9    chr1   12772298       13049572  NM_001146181      HNRNPCL3
10   chr1   12772298       13049572  NM_001146344      PRAMEF11
11   chr1   12772298       13049572  NM_001294139       PRAMEF1
12   chr1   12772298       13049572  NM_001302551      HNRNPCL4
14   chr1   12772298       13049572     NM_023014       PRAMEF2
15   chr1   12772298       13049572     NM_152290      C1orf158
16  chr16   68556879       68673572  NM_001305204         ZFP90
18   chr2   97174222       97299767  NM_001115016        KANSL3
19   chr2   97174222       97299767  NM_001319085        ARID5A
22   chr2   97174222       97299767     NR_135564  LOC105373496
23   chr2   97325068       97471320  NM_001293083        FER1L5
24   chr2   97325068       97471320  NM_001322354        LMAN2L
25   chr2   97325068       97471320     NM_020184         CNNM4
27   chr2   97325068       97471320     NR_036074       MIR3127
28  chr21   23456127       23723118     NR_038400     LINC00308
29  chr21   23456127       23723118     NR_109959  LOC101927843,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   85706271       85987185  NM_001310153   GOLGA6L3
1  chr15   85706271       85987185     NM_006738     AKAP13
2  chr15   85706271       85987185     NR_049748  LOC642423
3  chr15   85706271       85987185     NR_106993    MIR7706
4   chr9   38966382       39113317     NM_033655    CNTNAP3, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr3  148143085      148486585  NM_009585     AGTR1
2  chr7  117555810      117828249  NM_016200      LSM8,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr1   12830395       12990663  NM_001009611     PRAMEF4
1   chr1   12830395       12990663  NM_001012276     PRAMEF8
2   chr1   12830395       12990663  NM_001013631    HNRNPCL1
3   chr1   12830395       12990663  NM_001080830    PRAMEF12
4   chr1   12830395       12990663  NM_001146181    HNRNPCL3
5   chr1   12830395       12990663  NM_001146344    PRAMEF11
6   chr1   12830395       12990663  NM_001294139     PRAMEF1
7   chr1   12830395       12990663  NM_001302551    HNRNPCL4
9   chr1   12830395       12990663     NM_023014     PRAMEF2
10  chr2   50964003       51109207  NM_001330082       NRXN1
11  chr4   69254263       69376058     NM_014058   TMPRSS11E
12  chr8    7825483        7970190  NM_001256871     USP17L3
13  chr8    7825483        7970190  NM_001256872     USP17L8
14  chr8    7825483        7970190     NR_003668  DEFB109P1B
15  chr8    7825483        7970190     NR_027424      FAM66E
16  chr8    7825483        7970190     NR_031689    MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   45482382       45673812  NM_001308120   FAM179B
1   chr14   45482382       45673812  NM_001308133     FANCM
3   chr14   45482382       45673812     NM_002013     FKBP3
4   chr14   45482382       45673812     NM_017922    PRPF39
5   chr14   45482382       45673812     NM_018353  MIS18BP1
6   chr14   45482382       45673812     NR_003691  SNORD127
7   chr18     590303         806567  NM_001012716    TYMSOS
8   chr18     590303         806567     NM_001071      TYMS
9   chr18     590303         806567  NM_001126123    ENOSF1
10  chr18     590303         806567  NM_001289036     CLUL1
14  chr18     590303         806567     NM_005433      YES1
17   chr5   19659787       19774998  NM_001291956     CDH18
20   chr7    3441023        4111512     NM_152744      SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   22149376       22812395  NM_001001413      GOLGA6L1
1   chr15   22149376       22812395  NM_001004719         OR4M2
2   chr15   22149376       22812395  NM_001005241         OR4N4
3   chr15   22149376       22812395  NM_001271664     GOLGA6L22
4   chr15   22149376       22812395     NR_015416     LOC727924
5   chr15   22149376       22812395     NR_027407      GOLGA8DP
6   chr15   22149376       22812395     NR_028067        OR4N3P
7   chr15   22149376       22812395     NR_031672      MIR1268A
8   chr15   22149376       22812395     NR_033735        REREP3
9   chr15   22149376       22812395     NR_039734     MIR4509-3
10  chr15   22149376       22812395     NR_110480  LOC101927079
12  chr15   22149376       22812395     NR_128721     MIR5701-3
13  chr15   22149376       22812395     NR_135666   IGHV1OR15-3
14  chr15   22149376       22812395     NR_135694   IGHV1OR15-1
15  chr15   26967413       27766307     NM_000810        GABRA5
17  chr15   26967413       27766307  NM_001270873        GABRG3
18  chr15   26967413       27766307  NM_001278631        GABRB3
21  chr15   26967413       27766307     NR_120343    GABRG3-AS1
22  chr16   83990113       84134772  NM_001080442       SLC38A8
23  chr16   83990113       84134772     NM_003791        MBTPS1
24  chr16   83990113       84134772     NM_019065        NECAB2
25  chr16   83990113       84134772     NM_182981        OSGIN1
26   chr9   41472779       41621974  NM_001113541     SPATA31A5
27   chr9   41472779       41621974     NM_015667     SPATA31A7
28   chr9   41472779       41621974     NR_003528       ZNF658B
29   chr9   41472779       41621974     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48317635       48436008  NM_001004702         OR4C3
1   chr11   48317635       48436008  NM_001004725         OR4S1
2   chr11   48317635       48436008  NM_001005513        OR4C45
3   chr15   28668099       28786348     NR_033351       GOLGA8F
4   chr15   28668099       28786348     NR_033353       GOLGA8G
5   chr15   28668099       28786348     NR_039734     MIR4509-3
7   chr15   98278406       98385163     NR_024172     LINC00923
8   chr15   98251876       98353606     NR_024172     LINC00923
9    chr9   44295609       44407622     NR_121564  LOC101927827
10   chr9   44295609       44407622     NR_126050  LOC103908605,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   48861388       49452617  NM_001286238        SPATA6
1   chr1   48861388       49452617  NM_001302082         BEND5
2   chr1   48861388       49452617  NM_001323575         AGBL4
3   chr6  162853884      163872765  NM_001080378         PACRG
5   chr6  162853884      163872765     NM_006775           QKI
6   chr6  162853884      163872765     NM_013988         PARK2
7   chr6  162853884      163872765     NR_028390     PACRG-AS1
8   chr6  162853884      163872765     NR_033862  DKFZp451B082
9   chr6  162853884      163872765     NR_037593          CAHM
10  chr6  162853884      163872765     NR_110871     PACRG-AS2
12  chr6  162853884      163872765     NR_122120     PACRG-AS3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12804887       12983029  NM_001009611       PRAMEF4
1    chr1   12804887       12983029  NM_001012276       PRAMEF8
2    chr1   12804887       12983029  NM_001013631      HNRNPCL1
3    chr1   12804887       12983029  NM_001080830      PRAMEF12
4    chr1   12804887       12983029  NM_001146181      HNRNPCL3
5    chr1   12804887       12983029  NM_001146344      PRAMEF11
6    chr1   12804887       12983029  NM_001294139       PRAMEF1
7    chr1   12804887       12983029  NM_001302551      HNRNPCL4
9    chr1   12804887       12983029     NM_023014       PRAMEF2
10   chr1   12804887       12983029     NM_152290      C1orf158
11  chr17      51551         341585  NM_001013672      C17orf97
12  chr17      51551         341585  NM_001190411        RPH3AL
13  chr17      51551         341585     NM_182705         RFLNB
14  chr17      51551         341585     NR_040011  LOC100506388
15  chr17      51551         341585     NR_136407  LOC105371430
16   chr6   38021089       39093348  NM_001172418         BTBD9
17   chr6   38021089       39093348  NM_001206927         DNAH8
18   chr6   38021089       39093348  NM_001304793        SAYSD1
19   chr6   38021089       39093348     NM_002062         GLP1R
20   chr6   38021089       39093348     NM_006708          GLO1
21   chr6   38021089       39093348     NM_021943        ZFAND3
23   chr6   38021089       39093348     NR_038401  LOC100131047
24   chr6   38021089       39093348     NR_144472     BTBD9-AS1
25   chr7    8698619        8880028     NM_152745         NXPH1
26   chr9     319061         742070  NM_001190458         DOCK8
27   chr9     319061         742070  NM_001256876         KANK1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12823003       13554660  NM_001009611    PRAMEF4
1    chr1   12823003       13554660  NM_001010889    PRAMEF6
3    chr1   12823003       13554660  NM_001010890    PRAMEF9
4    chr1   12823003       13554660  NM_001012276    PRAMEF8
6    chr1   12823003       13554660  NM_001013407    PRAMEF5
8    chr1   12823003       13554660  NM_001013631   HNRNPCL1
9    chr1   12823003       13554660  NM_001024661   PRAMEF14
10   chr1   12823003       13554660  NM_001039361   PRAMEF10
11   chr1   12823003       13554660  NM_001080830   PRAMEF12
12   chr1   12823003       13554660  NM_001098376   PRAMEF15
13   chr1   12823003       13554660  NM_001099790   PRAMEF19
14   chr1   12823003       13554660  NM_001099850   PRAMEF18
16   chr1   12823003       13554660  NM_001099851   PRAMEF17
17   chr1   12823003       13554660  NM_001099852   PRAMEF20
18   chr1   12823003       13554660  NM_001100631   PRAMEF22
20   chr1   12823003       13554660  NM_001136561   HNRNPCL2
21   chr1   12823003       13554660  NM_001146181   HNRNPCL3
22   chr1   12823003       13554660  NM_001146344   PRAMEF11
23   chr1   12823003       13554660  NM_001291381  PRAMEF33P
24   chr1   12823003       13554660  NM_001294139    PRAMEF1
25   chr1   12823003       13554660  NM_001300891   PRAMEF27
27   chr1   12823003       13554660  NM_001302551   HNRNPCL4
28   chr1   12823003       13554660  NM_001306072   PRAMEF26
29   chr1   12823003       13554660  NM_001310134   PRAMEF25
31   chr1   12823003       13554660     NM_023014    PRAMEF2
32   chr1   12823003       13554660     NR_111945  PRAMEF36P
34  chr12   57721420       57991655  NM_001080156    ARHGAP9
36  chr12   57721420       57991655  NM_001146258    PIP4K2C
37  chr12   57721420       57991655  NM_001160045       GLI1
39  chr12   57721420       57991655  NM_001261412      DCTN2
41  chr12   57721420       57991655  NM_001330122     R3HDM2
42  chr12   57721420       57991655     NM_004083      DDIT3
43  chr12   57721420       57991655     NM_004984      KIF5A
44  chr12   57721420       57991655     NM_004990       MARS
45  chr12   57721420       57991655     NM_005538      INHBC
47  chr12   57721420       57991655     NM_031479      INHBE
49  chr12   57721420       57991655     NM_052897       MBD6
50  chr12   57721420       57991655     NR_030346     MIR616
51  chr12   57721420       57991655     NR_106816    MIR6758
52  chr19   24259062       24978219  NM_001278661     ZNF254
55  chr19   24259062       24978219     NR_003603   HAVCR1P1
56   chr9   88403452       88507335     NR_029410  LOC389765,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12     689342        1019982  NM_001294345         NINJ2
3   chr12     689342        1019982     NM_018979          WNK1
4   chr12     689342        1019982     NR_122124  LOC100049716
5   chr12     689342        1019982     NR_134624  LOC105369595
6   chr15   20939867       21121951  NM_001277303        POTEB2
7   chr15   20939867       21121951     NM_207355        POTEB3
8   chr15   20939867       21121951     NR_027992        NBEAP1
9   chr15   20939867       21121951     NR_036062     MIR3118-2
11  chr20   14667980       14873055     NM_080676       MACROD2
12  chr20   14667980       14873055     NR_037841   MACROD2-AS1
13   chr9    4342033        4609102  NM_001039395       SPATA6L
14   chr9    4342033        4609102     NM_004170        SLC1A1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   35686934       35833869     NR_039629  MIR548AD
1  chr3   17355900       17503182  NM_001134381    TBC1D5
3  chr3   60201056       60358667  NM_001320899      FHIT,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr19   10263057       10383543     NM_000201     ICAM1
1  chr19   10263057       10383543  NM_001318730     DNMT1
3  chr19   10263057       10383543     NM_004230     S1PR2
4  chr19   10263057       10383543     NM_015956     MRPL4
6  chr19   10263057       10383543     NR_036206   MIR4322
7   chr9    9989159       10245620     NM_002839     PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   80828009       80942214  NM_001318536         SPRY2
3   chr17   14061292       14229629  NM_001007530        CDRT15
4   chr17   14061292       14229629     NM_001303         COX10
5   chr17   14061292       14229629     NM_006041      HS3ST3B1
6   chr17   14061292       14229629     NR_026880      MGC12916
7    chr2   97172163       97582588  NM_001115016        KANSL3
8    chr2   97172163       97582588  NM_001122646       FAM178B
10   chr2   97172163       97582588  NM_001293083        FER1L5
11   chr2   97172163       97582588  NM_001319085        ARID5A
13   chr2   97172163       97582588  NM_001322354        LMAN2L
14   chr2   97172163       97582588     NM_016466       ANKRD39
16   chr2   97172163       97582588     NM_017623         CNNM3
17   chr2   97172163       97582588     NM_017789        SEMA4C
18   chr2   97172163       97582588     NM_020184         CNNM4
20   chr2   97172163       97582588     NM_144994       ANKRD23
21   chr2   97172163       97582588     NR_036074       MIR3127
23   chr2   97172163       97582588     NR_104346        NEURL3
24   chr2   97172163       97582588     NR_135564  LOC105373496
25   chr7   80094959       80276154     NM_000072          CD36
28   chr7   80094959       80276154  NM_001102386         GNAT3,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr7    6848182        7083149  NM_198097     CCZ1B,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr4    8569200        8714423  NM_001014447           CPZ
1  chr4    8569200        8714423     NM_080819         GPR78
3  chr7   19701561       20023836  NM_001002926       TWISTNB
4  chr7   19701561       20023836     NM_152774       TMEM196
5  chr7   19701561       20023836     NR_036101       MIR3146
6  chr7   19701561       20023836     NR_110114  LOC101927668,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   97447329       97580229     NM_000110          DPYD
1    chr1   97447329       97580229     NR_046590      DPYD-AS1
2   chr10   81493030       81619484     NR_029407     LOC642361
3   chr10   81493030       81619484     NR_120611    NUTM2B-AS1
6   chr11  134244028      134349464     NM_054025        B3GAT1
7   chr11  134244028      134349464     NM_138342        GLB1L2
8   chr11  134244028      134349464     NR_033852     LOC283177
9    chr4  145129064      145830421     NM_022475          HHIP
10   chr4  145129064      145830421     NR_037595      HHIP-AS1
11   chr4  169240762      169341496  NM_001012967        DDX60L
13   chr6  136916416      137230425     NM_000288          PEX7
14   chr6  136916416      137230425     NM_005923        MAP3K5
15   chr6  136916416      137230425     NR_125858  LOC101928461
16   chr6  136916416      137230425     NR_134635  LOC101928429
17   chr9     140300        1986694  NM_001130865         DMRT2
18   chr9     140300        1986694  NM_001145355         CBWD1
19   chr9     140300        1986694  NM_001190458         DOCK8
20   chr9     140300        1986694  NM_001256876         KANK1
23   chr9     140300        1986694     NM_021240         DMRT3
24   chr9     140300        1986694     NM_021951         DMRT1
25   chr9     140300        1986694     NM_152569       C9orf66
29   chr9     140300        1986694     NR_110643     LINC01230
30   chr9   39090705       39256605     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   55739350       55895839  NM_001142770        PCDH15
3   chr16   28437968       28542558     NM_000086          CLN3
8   chr16   28437968       28542558     NM_018690         APOBR
9   chr16   28437968       28542558     NM_145659          IL27
10  chr16   76749021       78279627  NM_001105663         NUDT7
11  chr16   76749021       78279627  NM_001129979        SYCE1L
12  chr16   76749021       78279627  NM_001244755        CLEC3A
13  chr16   76749021       78279627  NM_001286639         MON1B
14  chr16   76749021       78279627  NM_001326358      ADAMTS18
16  chr16   76749021       78279627     NM_016373          WWOX
17  chr16   76749021       78279627     NM_020927         VAT1L
18  chr16   76749021       78279627     NR_039870       MIR4719
21   chr3   72716473       72878771     NM_018130          SHQ1
22   chr7    6872908        8190707  NM_001037763       COL28A1
23   chr7    6872908        8190707  NM_001136020          ICA1
25   chr7    6872908        8190707  NM_001302350         UMAD1
26   chr7    6872908        8190707     NM_002947          RPA3
27   chr7    6872908        8190707     NM_019005          MIOS
28   chr7    6872908        8190707     NM_020156       C1GALT1
30   chr7    6872908        8190707     NM_138426        GLCCI1
31   chr7    6872908        8190707     NR_034022  LOC100131257
32   chr7    6872908        8190707     NR_037454       MIR3683
33   chr7    6872908        8190707     NR_108073  LOC101927354
34   chr7    6872908        8190707     NR_110018  LOC100505921
35   chr7    6872908        8190707     NR_110084  LOC101927391
36   chr7  124913227      125426571     NR_110188  LOC101928283
37   chr8   22946597       23066599     NM_003840     TNFRSF10D
38   chr8   22946597       23066599     NM_003841     TNFRSF10C
39   chr8   22946597       23066599     NM_003844     TNFRSF10A
40   chr8   22946597       23066599     NR_046173     LOC254896, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   27059735       27302285  NM_001080406  C12orf71
1  chr12   27059735       27302285  NM_001171887  FGFR1OP2
3  chr12   27059735       27302285  NM_001271811     MED21
4  chr12   27059735       27302285     NM_016551    TM7SF3
5  chr12   27059735       27302285     NM_018164      ASUN
6   chr8  100513018      100624680     NM_017890    VPS13B
7   chr8  100513018      100624680     NR_030329    MIR599
8   chr8  100513018      100624680     NR_030596    MIR875
9   chr9   15029673       15187868  NM_001168339    TTC39B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12788578       12993316  NM_001009611       PRAMEF4
1    chr1   12788578       12993316  NM_001012276       PRAMEF8
2    chr1   12788578       12993316  NM_001013631      HNRNPCL1
3    chr1   12788578       12993316  NM_001080830      PRAMEF12
4    chr1   12788578       12993316  NM_001103170       AADACL3
5    chr1   12788578       12993316  NM_001146181      HNRNPCL3
6    chr1   12788578       12993316  NM_001146344      PRAMEF11
7    chr1   12788578       12993316  NM_001294139       PRAMEF1
8    chr1   12788578       12993316  NM_001302551      HNRNPCL4
10   chr1   12788578       12993316     NM_023014       PRAMEF2
11   chr1   12788578       12993316     NM_152290      C1orf158
12  chr11    4197317        4427266  NM_001005161        OR52B4
13  chr11    4197317        4427266     NM_003141        TRIM21
14  chr11    4197317        4427266     NR_047550  LOC100506082
15  chr16    9263335        9466241     NR_135195  LOC101927009
16   chr6  140461925      140674046     NR_037441       MIR3668
17   chr8   58131606       58268115     NR_026772     LINC00588
18   chr8   58131606       58268115     NR_038235     LINC01606
19   chr8   58131606       58268115     NR_038874     LOC286177
20   chr8   58131606       58268115     NR_125818  LOC101929488,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   60253993       62022162  NM_001040694        INCENP
1   chr11   60253993       62022162  NM_001079807          PGA3
2   chr11   60253993       62022162  NM_001079808          PGA4
3   chr11   60253993       62022162  NM_001127392          MYRF
4   chr11   60253993       62022162  NM_001139443         BEST1
5   chr11   60253993       62022162  NM_001142565         CPSF7
6   chr11   60253993       62022162  NM_001145077       LRRC10B
7   chr11   60253993       62022162  NM_001161452      CYB561A3
8   chr11   60253993       62022162  NM_001170753       PPP1R32
9   chr11   60253993       62022162  NM_001173990       TMEM216
10  chr11   60253993       62022162  NM_001271686       RAB3IL1
11  chr11   60253993       62022162  NM_001278320        MS4A13
12  chr11   60253993       62022162  NM_001281501         FADS2
15  chr11   60253993       62022162  NM_001300773          SYT7
16  chr11   60253993       62022162  NM_001310141        MS4A18
17  chr11   60253993       62022162  NM_001330281       TMEM138
18  chr11   60253993       62022162  NM_001346456           CD5
19  chr11   60253993       62022162     NM_001923          DDB1
20  chr11   60253993       62022162     NM_002032          FTH1
21  chr11   60253993       62022162     NM_002407       SCGB2A1
22  chr11   60253993       62022162     NM_004111          FEN1
24  chr11   60253993       62022162     NM_004778        PTGDR2
25  chr11   60253993       62022162     NM_006133         DAGLA
26  chr11   60253993       62022162     NM_006551       SCGB1D2
27  chr11   60253993       62022162     NM_006552       SCGB1D1
28  chr11   60253993       62022162     NM_006725           CD6
31  chr11   60253993       62022162     NM_013402         FADS1
32  chr11   60253993       62022162     NM_014206       TMEM258
34  chr11   60253993       62022162     NM_014224          PGA5
35  chr11   60253993       62022162     NM_014502        PRPF19
..    ...        ...            ...           ...           ...
38  chr11   60253993       62022162     NM_017716        MS4A12
39  chr11   60253993       62022162     NM_017841        SDHAF2
40  chr11   60253993       62022162     NM_017870      TMEM132A
41  chr11   60253993       62022162     NM_017966        VPS37C
42  chr11   60253993       62022162     NM_021727         FADS3
43  chr11   60253993       62022162     NM_024092       TMEM109
44  chr11   60253993       62022162     NM_024098        CCDC86
46  chr11   60253993       62022162     NM_031457         MS4A8
47  chr11   60253993       62022162     NM_152717        MS4A15
48  chr11   60253993       62022162     NM_152718          VWCE
49  chr11   60253993       62022162     NM_206893        MS4A10
50  chr11   60253993       62022162     NM_207341           ZP1
51  chr11   60253993       62022162     NR_002775       RPLP0P2
52  chr11   60253993       62022162     NR_026882  DKFZP434K028
53  chr11   60253993       62022162     NR_026946     LINC00301
54  chr11   60253993       62022162     NR_027391       SLC15A3
55  chr11   60253993       62022162     NR_030342        MIR611
56  chr11   60253993       62022162     NR_031729       MIR1908
57  chr11   60253993       62022162     NR_039708       MIR4488
58  chr11   60253993       62022162     NR_106804       MIR6746
59  chr11   60253993       62022162     NR_110189  LOC101927495
61   chr6  161921079      162069459     NM_013988         PARK2
62   chr7  143018279      143148248     NM_000083         CLCN1
63   chr7  143018279      143148248  NM_001278297       FAM131B
64   chr7  143018279      143148248  NM_001322263  LOC100507507
65   chr7  143018279      143148248     NM_003461           ZYX
66   chr7  143018279      143148248     NM_005232         EPHA1
68   chr7  143018279      143148248     NM_177437       TAS2R60
69   chr7  143018279      143148248     NR_033897     EPHA1-AS1
70   chr7  143018279      143148248     NR_106952       MIR6892

[61 rows x 5 columns],   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143703957      143839196  NM_001123068       PPIAL4G
1  chr1  143703957      143839196     NR_104014     LINC01138
2  chr1  143703957      143839196     NR_111930  LOC100132057
3  chr7    8690140        8891505     NM_152745         NXPH1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  190029262      190155716  NM_001317188      BRINP3
2   chr13   63353275       63498468     NR_047029   LINC00448
5   chr14   42046569       42220634  NM_001346175       LRFN5
6   chr15   28691784       28796468     NR_033351     GOLGA8F
7   chr15   28691784       28796468     NR_033353     GOLGA8G
8   chr15   28691784       28796468     NR_039734   MIR4509-3
9    chr2  133081937      133383508     NM_001508       GPR39
10   chr2  133081937      133383508     NR_135203     FAM201B
11  chr20    8544471        8798946     NM_015192       PLCB1
12   chr3  162884211      163119115     NR_033945   LINC01192
13   chr4   94211692       94470846     NM_001510       GRID2
14   chr8    6585093        7104362  NM_001302265      DEFA1B
15   chr8    6585093        7104362     NM_001925       DEFA4
16   chr8    6585093        7104362     NM_001926       DEFA6
17   chr8    6585093        7104362     NM_004084       DEFA1
19   chr8    6585093        7104362     NM_005217       DEFA3
20   chr8    6585093        7104362     NM_005218       DEFB1
21   chr8    6585093        7104362     NM_018361      AGPAT5
22   chr8    6585093        7104362     NM_021010       DEFA5
23   chr8    6585093        7104362     NM_207411        XKR5
24   chr8    6585093        7104362     NR_029386     DEFA10P
25   chr8    6585093        7104362     NR_036686      DEFT1P
27   chr8    6585093        7104362     NR_039803    MIR4659A
28   chr8    6585093        7104362     NR_039807    MIR4659B
29   chr8    6585093        7104362     NR_045217  GS1-24F4.2
30   chr8    6585093        7104362     NR_073407      DEFA8P
31   chr8    6585093        7104362     NR_073408      DEFA9P
32   chr8    6585093        7104362     NR_073421     DEFA11P
33   chr8    8127045        8236777  NM_001080826       PRAG1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  102386771      102511781     NR_110211     OLFM3
1  chr7  110705372      110929264  NM_001099658     LRRN3
2  chr7  110705372      110929264  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   16393538       17277746  NM_001001395          LMO3
1   chr12   16393538       17277746  NM_001170798       SLC15A5
6   chr12   16393538       17277746  NM_001267598         MGST1
12  chr12   16393538       17277746     NR_036619        SKP1P2
13  chr14   79578824       79714074     NM_004796         NRXN3
15  chr14   79578824       79714074     NR_135159  LOC105370586
16  chr20   41062682       41222040     NM_133170         PTPRT
17   chr3   28947216       29726242  NM_001003792         RBMS3
19   chr3   28947216       29726242     NR_109804     RBMS3-AS3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   27629329       27861747  NM_001034842     PTCHD3
1  chr10   27629329       27861747  NM_001256411      RAB18
2  chr10   68018529       68245343  NM_001127384     CTNNA3
4   chr2   51317806       51447376     NR_135237  LOC730100,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81501444       81611542     NR_029407   LOC642361
1   chr10   81501444       81611542     NR_120611  NUTM2B-AS1
4   chr19   23465720       23597578  NM_001300951       ZNF91
5   chr19   23465720       23597578     NR_126448   LINC01224
6   chr20   14683187       14844757     NM_080676     MACROD2
7   chr22   19884770       19987602     NM_000754        COMT
10  chr22   19884770       19987602  NM_001282512      TXNRD2
11  chr22   19884770       19987602     NM_001670       ARVCF
14  chr22   19884770       19987602     NR_039918     MIR4761
15   chr9   28189332       28355708  NM_001258282      LINGO2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   91916821       92885269  NM_001012425      C1orf146
1   chr1   91916821       92885269  NM_001134419          CDC7
3   chr1   91916821       92885269  NM_001195683        TGFBR3
5   chr1   91916821       92885269  NM_001242805          BRDT
6   chr1   91916821       92885269  NM_001287737        SETSIP
7   chr1   91916821       92885269  NM_001319683          GLMN
9   chr1   91916821       92885269     NM_015237      KIAA1107
10  chr1   91916821       92885269     NM_024813         RPAP2
11  chr1   91916821       92885269     NM_173567         EPHX4
12  chr1   91916821       92885269     NM_183242         BTBD8
13  chr1  244983414      245116664  NM_001312871         COX20
15  chr1  244983414      245116664     NM_004501        HNRNPU
17  chr1  244983414      245116664     NR_132782      SNORA100
18  chr2   49121219       49354593     NM_181446          FSHR
19  chr2   49121219       49354593     NR_107011      MIR548BA
20  chr4  190309621      191328502  NM_001286820          FRG2
21  chr4  190309621      191328502     NM_004477          FRG1
22  chr4  190309621      191328502     NR_121644          DBET
23  chr4  190309621      191328502     NR_121679     LINC01262
24  chr4  190309621      191328502     NR_132380     LINC01596
25  chr4  190309621      191328502     NR_135513  LOC105379514
26  chr7   21353716       21482505  NM_001326542           SP4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143131761      143266246     NR_110761  LOC102723769
1   chr10   54146759       54473221     NR_120641     LINC01468
3   chr16   16431322       16550984  NM_001282511        NPIPA8
4   chr16   16431322       16550984     NR_036447        PKD1P1
5   chr16   16431322       16550984     NR_106971     MIR6511A4
6    chr2  110163945      110325237  NM_001099289        SH3RF3
7    chr2  110163945      110325237  NM_001321504        SEPT10
9    chr8    7825080        8038645  NM_001256871       USP17L3
10   chr8    7825080        8038645  NM_001256872       USP17L8
11   chr8    7825080        8038645     NR_003668    DEFB109P1B
12   chr8    7825080        8038645     NR_027424        FAM66E
13   chr8    7825080        8038645     NR_031689      MIR548I3
14   chr8  143450809      143756564  NM_001077527           JRK
15   chr8  143450809      143756564  NM_001291931       TSNARE1
16   chr8  143450809      143756564     NM_001702        ADGRB1
17   chr8  143450809      143756564     NM_015193           ARC
19   chr8  143450809      143756564     NR_033343          PSCA
20   chr8  143450809      143756564     NR_134305  LOC101928087,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr6  119710638      119932353     NR_046100     LOC285762
1   chr6  119710638      119932353     NR_134600  LOC105377975
2   chr7   64107477       64528718  NM_001007253        ERV3-1
3   chr7   64107477       64528718  NM_001160183        ZNF138
4   chr7   64107477       64528718  NM_001282360        ZNF107
5   chr7   64107477       64528718     NM_015852        ZNF117
6   chr7   64107477       64528718     NM_021148        ZNF273
7   chr7   64107477       64528718     NR_033416        CCT6P3
10  chr7   64107477       64528718     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67274837       67555706     NM_000695       ALDH3B2
1   chr11   67274837       67555706     NM_000852         GSTP1
3   chr11   67274837       67555706  NM_001166102        NDUFV1
4   chr11   67274837       67555706  NM_001243750         NUDT8
5   chr11   67274837       67555706  NM_001318496         CABP2
6   chr11   67274837       67555706     NM_005851       CDK2AP2
7   chr11   67274837       67555706     NM_005995         TBX10
8   chr11   67274837       67555706     NM_080658          ACY3
10  chr11   67274837       67555706     NR_033791        DOC2GP
12  chr11   67274837       67555706     NR_130935      C11orf72
13   chr2  110177493      110322200  NM_001099289        SH3RF3
14   chr2  110177493      110322200  NM_001321504        SEPT10
16   chr7     131200         253407     NM_020223        FAM20C
17   chr7     131200         253407     NR_108065  LOC100507642
18   chr7     131200         253407     NR_134324  LOC105375115
19   chr7     131200         253407     NR_134325  LOC102723672
20   chr7  110551568      110704028  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   63304932       63571873  NR_047029  LINC00448,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241720852      242146732  NM_001290693         BECN2
1    chr1  241720852      242146732  NM_001319224          EXO1
2    chr1  241720852      242146732     NM_001821          CHML
3    chr1  241720852      242146732     NM_003679           KMO
5    chr1  241720852      242146732     NM_014322          OPN3
6    chr1  241720852      242146732     NM_144625         WDR64
7   chr10    7117999        7275010  NM_001018039        SFMBT2
9   chr10    7117999        7275010     NR_132972      SNORD129
10  chr17     404848         857559  NM_001128159         VPS53
11  chr17     404848         857559  NM_001205319           NXN
12  chr17     404848         857559  NM_001317947          MRM3
13  chr17     404848         857559  NM_001318008        FAM57A
14  chr17     404848         857559     NM_015721        GEMIN4
15  chr17     404848         857559     NM_016080         GLOD4
18  chr17     404848         857559     NR_024120        DBIL5P
19  chr17     404848         857559     NR_135633  LOC101927727
20   chr9   28168442       28482451  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89099431       89611652  NM_001143837          NOX4
1   chr11   89099431       89611652  NM_001164397       TRIM64B
2   chr11   89099431       89611652  NM_001271942        TRIM77
7   chr11   89099431       89611652     NM_020358        TRIM49
8   chr11   89099431       89611652     NM_153696        FOLH1B
9   chr11   89099431       89611652     NR_028346      TRIM53AP
11  chr12   89388754       89490997     NR_038385     LOC728084
12   chr2   97167626       97328809  NM_001115016        KANSL3
13   chr2   97167626       97328809  NM_001285485        NEURL3
14   chr2   97167626       97328809  NM_001293083        FER1L5
15   chr2   97167626       97328809  NM_001319085        ARID5A
19   chr2   97167626       97328809     NR_135564  LOC105373496
20   chr7  109560573      109749009     NR_003024       EIF3IP1
21   chr7  110991415      111144781  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   79742106       79856473     NR_104660  LINC01229
2  chr16   79742106       79856473     NR_104663     MAFTRR
3   chr3  105327793      105488104  NM_001321786       CBLB,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr21   22560584       22705144  NM_004540     NCAM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   85616033       85751797  NM_001079910        LRRIQ1
1   chr12   85616033       85751797     NM_006982          ALX1
2    chr7    6844046        7415340  NM_001037763       COL28A1
3    chr7    6844046        7415340     NM_020156       C1GALT1
4    chr7    6844046        7415340     NM_198097         CCZ1B
5    chr7    6844046        7415340     NR_034022  LOC100131257
6    chr7    6844046        7415340     NR_037454       MIR3683
7    chr7    6844046        7415340     NR_108073  LOC101927354
8    chr7  110781803      111521034  NM_001244606        IMMP2L
9    chr7  110781803      111521034     NM_014705         DOCK4
11   chr7  110781803      111521034     NR_103806     DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67913295       68069636  NM_001127384        CTNNA3
2    chr8    6777188        6896898  NM_001302265        DEFA1B
3    chr8    6777188        6896898     NM_001925         DEFA4
4    chr8    6777188        6896898     NM_001926         DEFA6
5    chr8    6777188        6896898     NM_004084         DEFA1
7    chr8    6777188        6896898     NM_005217         DEFA3
8    chr8    6777188        6896898     NR_029386       DEFA10P
9    chr8    6777188        6896898     NR_036686        DEFT1P
11   chr8    6777188        6896898     NR_073407        DEFA8P
12   chr8    6777188        6896898     NR_073408        DEFA9P
13   chr8    6777188        6896898     NR_073421       DEFA11P
14   chr9   43276998       44598353  NM_001145196     SPATA31A6
15   chr9   43276998       44598353  NM_001201380      CNTNAP3B
16   chr9   43276998       44598353     NR_111893     CNTNAP3P2
17   chr9   43276998       44598353     NR_121564  LOC101927827
18   chr9   43276998       44598353     NR_126050  LOC103908605
19   chr9   43276998       44598353     NR_126166       FAM74A7
20   chr9   43276998       44598353     NR_131213   XLOC_007697,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr17    5510504        6805782  NM_001105520    C17orf100
1   chr17    5510504        6805782  NM_001143838      SLC13A5
2   chr17    5510504        6805782  NM_001195228       FAM64A
3   chr17    5510504        6805782  NM_001285402        AIPL1
6   chr17    5510504        6805782     NM_014804     KIAA0753
7   chr17    5510504        6805782     NM_015253        WSCD1
8   chr17    5510504        6805782     NM_016060        MED31
9   chr17    5510504        6805782     NM_031220      PITPNM3
10  chr17    5510504        6805782     NM_032731      TXNDC17
11  chr17    5510504        6805782     NM_053285        TEKT1
12  chr17    5510504        6805782     NM_153230       FBXO39
13  chr17    5510504        6805782     NR_002710     ALOX12P2
14  chr17    5510504        6805782     NR_039745    MIR4520-1
15  chr17    5510504        6805782     NR_039874    MIR4520-2
16  chr17    5510504        6805782     NR_040000    LOC339166
17  chr17    5510504        6805782     NR_045985     ALOX15P1
18  chr17    5510504        6805782     NR_046398         XAF1
20  chr20   14651409       15106831     NM_080676      MACROD2
21  chr20   14651409       15106831     NR_037841  MACROD2-AS1
23   chr5  101016783      102506861  NM_001281471      PPIP5K2
24   chr5  101016783      102506861  NM_001289004      SLCO6A1
25   chr5  101016783      102506861  NM_001317954         GIN1
26   chr5  101016783      102506861  NM_001319943          PAM
28   chr5  101016783      102506861     NM_180991      SLCO4C1
29   chr5  101016783      102506861     NR_047462    LINC00492
30   chr5  101016783      102506861     NR_103753    LINC00491
31   chr7  110556744      110715246  NM_001244606       IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr10   67975811       68231984  NM_001127384       CTNNA3
2  chr20   14841839       15598516  NM_001033087      MACROD2
4  chr20   14841839       15598516     NR_037841  MACROD2-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr21   28142685       28635471     NM_006988   ADAMTS1
1  chr21   28142685       28635471     NM_007038   ADAMTS5
2  chr21   28142685       28635471     NR_039916   MIR4759
3   chr3   60345904       60452657  NM_001320899      FHIT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   73380343       74037039     NR_110676     LINC01360
2   chr15   77865013       77970706  NM_001301186        LINGO1
12  chr15   77865013       77970706     NR_045123    LINGO1-AS1
13  chr15   77865013       77970706     NR_120361    LINGO1-AS2
14   chr2   51203476       51315061  NM_001330079         NRXN1
17   chr2   51203476       51315061     NR_135237     LOC730100
18   chr2   77941375       78049119     NR_110288  LOC101927967
19   chr2   78258595       78405886     NR_110287  LOC101927948
20   chr2   78258595       78405886     NR_110288  LOC101927967
21   chr2  242493292      242827828  NM_001164356         THAP4
22   chr2  242493292      242827828  NM_001165031         DTYMK
23   chr2  242493292      242827828  NM_001167601          NEU4
25   chr2  242493292      242827828  NM_001287249        D2HGDH
26   chr2  242493292      242827828  NM_001330161          ING5
28   chr2  242493292      242827828     NM_005018         PDCD1
30   chr2  242493292      242827828     NM_022134       GAL3ST2
32   chr2  242493292      242827828     NM_032515           BOK
33   chr2  242493292      242827828     NM_173821          RTP5
34   chr2  242493292      242827828     NM_178326         ATG4B
35   chr2  242493292      242827828     NR_033346       BOK-AS1
36   chr2  242493292      242827828     NR_110220     LINC01237
37  chr20   41018083       41266435     NM_133170         PTPRT
38   chr7   63841015       63996267  NM_001130022        ZNF680
40   chr7   63841015       63996267     NR_029404       YWHAEP1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  108013187      108209454  NM_001079874      VAV3
1    chr1  108013187      108209454  NM_001113228     NTNG1
5   chr16    8658308        8780420     NM_020686      ABAT
6   chr16    8658308        8780420     NM_024109   METTL22
7   chr19   34657716       35015010  NM_001080436      WTIP
8   chr19   34657716       35015010  NM_001289789       GPI
11  chr19   34657716       35015010     NM_005499      UBA2
12  chr19   34657716       35015010     NM_014686  KIAA0355
13  chr19   34657716       35015010     NM_015578    LSM14A
14  chr19   34657716       35015010     NM_032346    PDCD2L
15   chr3   17377107       17541193  NM_001134381    TBC1D5,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   27614621       28107407  NM_001034842     PTCHD3
1   chr10   27614621       28107407  NM_001242702        MKX
2   chr10   27614621       28107407  NM_001256411      RAB18
3   chr10   27614621       28107407  NM_001290020      ARMC4
7   chr10   27614621       28107407     NR_121652    MKX-AS1
8   chr10   27614621       28107407     NR_138082    ARMC4P1
9   chr10   56518939       56620984  NM_001142770     PCDH15
12   chr4   69095941       69242876  NM_001031732     YTHDC1
13   chr4   69095941       69242876     NM_182502  TMPRSS11B,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr18   63296961       63552771  NM_001317214      CDH7
3   chr4   94022319       94169610     NM_001510     GRID2
4   chr8    7902461        8074763     NR_031689  MIR548I3,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr15   29786474       29991549  NM_015307      FAM189A1
1  chr15   29786474       29991549  NR_135221  LOC100130111,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152407589      152515290     NM_019060         CRCT1
1    chr1  152407589      152515290     NM_178438         LCE5A
2   chr16   21509845       21816116  NM_001077180        METTL9
3   chr16   21509845       21816116  NM_001161683          OTOA
5   chr16   21509845       21816116     NM_005849         IGSF6
8   chr16   21509845       21816116     NR_002594      SLC7A5P2
9   chr16   21509845       21816116     NR_003370        RRN3P1
10  chr16   21509845       21816116     NR_027155        SMG1P3
11  chr16   21509845       21816116     NR_049833     MIR3680-2
12  chr16   21509845       21816116     NR_110930  LOC101927814
13   chr7    3329991        3504715     NM_152744          SDK1
14   chr9   22378367       22589288     NM_022160        DMRTA1, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr2  242416901      242614436  NM_001164356     THAP4
1   chr2  242416901      242614436  NM_001271978     STK25
4   chr2  242416901      242614436     NM_014808     FARP2
6   chr2  242416901      242614436     NM_032515       BOK
7   chr2  242416901      242614436     NM_178326     ATG4B
8   chr2  242416901      242614436     NR_033346   BOK-AS1
9   chr2  242416901      242614436     NR_036083   MIR3133
10  chr7   80150820       80251864  NM_001001547      CD36,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr19   57519378       57666149  NM_001012729      DUXA
1   chr19   57519378       57666149     NM_020903     USP29
2   chr19   57519378       57666149     NM_052882      ZIM3
3    chr5  109773896      110225261  NM_001039763   TMEM232
4    chr5  109773896      110225261  NM_001303250  SLC25A46
6    chr5  109773896      110225261     NR_031644  MIR548F3
7    chr7    3272868        3434669     NM_152744      SDK1
8    chr7   75780766       75938084  NM_001110199     SRRM3
9    chr7   75780766       75938084     NM_001540     HSPB1
10   chr7  110903393      111031104  NM_001244606    IMMP2L
12   chr8  100631578      100825473     NM_017890    VPS13B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    4773578        4902761  NM_001004752     OR51F1
1   chr11    4773578        4902761  NM_001004753     OR51F2
2   chr11    4773578        4902761  NM_001004758     OR51S1
3   chr11    4773578        4902761  NM_001005177     OR52R1
4   chr16   85300268       85405961     NR_038859  LINC00311
5   chr16   85300268       85405961     NR_049816    MIR5093
6    chr3     593009         924343     NR_110118  LINC01266
7    chr3    1336177        1447693  NM_001289081      CNTN6
8    chr3   37808285       37924777     NM_002207      ITGA9
9    chr3   37808285       37924777     NM_005808     CTDSPL
10   chr3   37808285       37924777     NR_110531  ITGA9-AS1
12   chr7  108433486      108579851  NM_001024607    C7orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   29490369       29596909     NR_135305        SMG1P2
2   chr17   48094578       48299584     NM_000088        COL1A1
3   chr17   48094578       48299584  NM_001199898          PDK2
6   chr17   48094578       48299584  NM_001257359        SAMD14
7   chr17   48094578       48299584     NM_002204         ITGA3
9   chr17   48094578       48299584     NM_032595       PPP1R9B
10  chr17   48094578       48299584     NR_024193         HILS1
11  chr17   48094578       48299584     NR_038230     LOC284080
12  chr17   48094578       48299584     NR_110806  LOC101927230
13  chr17   48094578       48299584     NR_135553          SGCA
14  chr21   23159417       23282759     NR_109958     LINC01425
15   chr4    9022683        9423817  NM_001242326      USP17L25
23   chr4    9022683        9423817  NM_001256852      USP17L10
24   chr4    9022683        9423817  NM_001256853      USP17L12
26   chr4    9022683        9423817  NM_001256854      USP17L11
29   chr4    9022683        9423817  NM_001256855      USP17L13
30   chr4    9022683        9423817  NM_001256857      USP17L17
31   chr4    9022683        9423817  NM_001256860      USP17L19
32   chr4    9022683        9423817  NM_001256861      USP17L20
33   chr4    9022683        9423817  NM_001256894      USP17L15
34   chr4    9022683        9423817     NR_027279      USP17L6P
35   chr4    9022683        9423817     NR_046416      USP17L9P
36   chr4  128432185      128566018     NM_015693          INTU,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   42065541       42513512  NM_001346175     LRFN5
1  chr16   21845933       21962526  NM_001310148    NPIPB4
2   chr7  110672778      110829919  NM_001099658     LRRN3
3   chr7  110672778      110829919  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37444691       37641666     NM_052997      ANKRD30A
1   chr10   37444691       37641666     NR_104061     LINC00993
2   chr10   67921564       68073091  NM_001127384        CTNNA3
4   chr14   27040754       27243200     NM_002515         NOVA1
6    chr7  110563881      110702746  NM_001244606        IMMP2L
8    chr8   58107814       58390033     NR_026772     LINC00588
9    chr8   58107814       58390033     NR_038235     LINC01606
10   chr8   58107814       58390033     NR_038874     LOC286177
11   chr8   58107814       58390033     NR_125818  LOC101929488
12   chr9   16825490       17200720  NM_001114395         CNTLN
14   chr9   16825490       17200720     NM_017637          BNC2,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr15   28714052       28912861  NR_033351    GOLGA8F
1  chr15   28714052       28912861  NR_033353    GOLGA8G
2  chr15   28714052       28912861  NR_036443    HERC2P9
3  chr15   28714052       28912861  NR_039734  MIR4509-3
4  chr18   61842049       62023142  NR_033881  LOC284294
5  chr18   61842049       62023142  NR_033983  LINC01538,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  110630913      110852537  NM_001099658     LRRN3
1  chr7  110630913      110852537  NM_001244606    IMMP2L
3  chr7  152308317      152479927     NM_005431     XRCC2
4  chr7  152308317      152479927     NM_020445    ACTR3B,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   28538768       28647212  NM_004667     HERC2
1  chr15   28538768       28647212  NR_033351   GOLGA8F
2  chr15   28538768       28647212  NR_033353   GOLGA8G,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   46149415       46284508  NM_001286341         SPERT
2   chr13   46149415       46284508     NM_182542       ERICH6B
3   chr13   46149415       46284508     NR_125786     LINC01055
4   chr16   14748731       14980814  NM_001277323        NPIPA3
6   chr16   14748731       14980814  NM_001277324        NPIPA2
8   chr16   14748731       14980814     NM_014287         NOMO1
9   chr16   14748731       14980814     NM_016561          BFAR
10  chr16   14748731       14980814     NR_023387       ABCC6P2
11  chr16   14748731       14980814     NR_133651       PLA2G10
12   chr5   95286300       95444371     NM_012081          ELL2
13   chr5   95286300       95444371     NR_030309        MIR583
14   chr5   95286300       95444371     NR_130776  LOC101929710,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr4   68970438       69080771     NM_207407     TMPRSS11F
1   chr4   68970438       69080771     NR_015446        FTLP10
2   chr4   68970438       69080771     NR_104048   TMPRSS11BNL
3   chr6  162837170      163020831     NM_013988         PARK2
4   chr6  162881038      163199303  NM_001080378         PACRG
6   chr6  162881038      163199303     NM_013988         PARK2
7   chr7  110460941      110577612  NM_001244606        IMMP2L
9   chr9   44292272       45417704     NR_027421        FAM27C
10  chr9   44292272       45417704     NR_121564  LOC101927827
11  chr9   44292272       45417704     NR_121606  LOC102723709
12  chr9   44292272       45417704     NR_126050  LOC103908605
13  chr9   44292272       45417704     NR_144466  LOC105379807,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   99182227       99394403  NM_001243270     CNTN5
2   chr15   54597637       54844300  NM_001080534    UNC13C
4    chr4   93226276       93480516     NM_001510     GRID2
5    chr5     159391         271816  NM_001080478   LRRC14B
6    chr5     159391         271816     NM_004168      SDHA
7    chr5     159391         271816     NM_013232     PDCD6
8    chr5     159391         271816     NM_052909  PLEKHG4B
9    chr5     159391         271816     NM_145265   CCDC127
11   chr5     159391         271816     NR_104613     HRAT5
12   chr6  162817736      163005953     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   14886908       15289724  NM_001017999          KAZN
5    chr1   60605564       61904086  NM_001145511          NFIA
8    chr1   60605564       61904086     NR_104180      NFIA-AS1
9    chr1   60605564       61904086     NR_110617      NFIA-AS2
11   chr1   60605564       61904086     NR_110628  LOC101926964
12  chr11   60342536       60444656     NR_026946     LINC00301
13  chr11   83514593       83725240  NM_001142699          DLG2
17  chr13   40343041       40967788  NM_001145079          COG6
18  chr13   40343041       40967788     NR_024506     LINC00598
19  chr13   40343041       40967788     NR_033877     LINC00548
20  chr13   40343041       40967788     NR_046870     LINC00332,     chrom  cnv_start  cnv_terminate    tx_name     gene_name
0   chr13   86026408       88942869  NM_015567       SLITRK5
1   chr13   86026408       88942869  NM_032229       SLITRK6
2   chr13   86026408       88942869  NR_033829     MIR4500HG
3   chr13   86026408       88942869  NR_039722       MIR4500
4   chr13   86026408       88942869  NR_046989     LINC00351
5   chr13   86026408       88942869  NR_104059     LINC00397
6   chr13   86026408       88942869  NR_131919  LOC105370306
7   chr13   86026408       88942869  NR_132371     LINC00430
8   chr14   21699522       21825684  NM_007192       SUPT16H
9   chr14   21699522       21825684  NM_020366       RPGRIP1
10  chr14   21699522       21825684  NM_031314        HNRNPC,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr5  175369861      175499044  NM_001265615       FAM153B
1   chr5  175369861      175499044     NM_032361         THOC3
2   chr5  175369861      175499044     NR_103794  LOC100996385
3   chr7   64100291       67534458     NM_000048           ASL
4   chr7   64100291       67534458     NM_000181          GUSB
5   chr7   64100291       67534458  NM_001007253        ERV3-1
7   chr7   64100291       67534458  NM_001160183        ZNF138
8   chr7   64100291       67534458  NM_001167961         KCTD7
9   chr7   64100291       67534458  NM_001282360        ZNF107
10  chr7   64100291       67534458  NM_001287060       RABGEF1
13  chr7   64100291       67534458  NM_001287532         ZNF92
15  chr7   64100291       67534458     NM_003596         TPST1
16  chr7   64100291       67534458     NM_015852        ZNF117
17  chr7   64100291       67534458     NM_016038          SBDS
18  chr7   64100291       67534458     NM_017994       TMEM248
19  chr7   64100291       67534458     NM_018264          TYW1
20  chr7   64100291       67534458     NM_021148        ZNF273
21  chr7   64100291       67534458     NM_173517      VKORC1L1
22  chr7   64100291       67534458     NR_002961       SNORA22
23  chr7   64100291       67534458     NR_003110        CCT6P1
24  chr7   64100291       67534458     NR_003934    GTF2IRD1P1
25  chr7   64100291       67534458     NR_022007        PMS2P4
26  chr7   64100291       67534458     NR_024548          CRCP
27  chr7   64100291       67534458     NR_026873     LINC00174
28  chr7   64100291       67534458     NR_027392       INTS4P2
29  chr7   64100291       67534458     NR_033416        CCT6P3
30  chr7   64100291       67534458     NR_038378     LOC441242
31  chr7   64100291       67534458     NR_039793     MIR4650-1
32  chr7   64100291       67534458     NR_040585       STAG3L4
39  chr7   64100291       67534458     NR_106898       MIR6839
40  chr7   64100291       67534458     NR_108104     LINC01372
41  chr7   64100291       67534458     NR_110037  LOC100996437
42  chr7   64100291       67534458     NR_111972  GS1-124K5.11
44  chr7   64100291       67534458     NR_120514  LOC102723427
46  chr7   64100291       67534458     NR_134570   GS1-124K5.4
48  chr7   64100291       67534458     NR_135738      GTF2IP23
49  chr7   64100291       67534458     NR_136637     LOC644794,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   89082872       89191138  NM_001143837       NOX4
5   chr13   80853910       80993975  NM_001318536      SPRY2
8   chr20    8615352        9024455     NM_015192      PLCB1
9    chr7  110688042      111300115  NM_001099658      LRRN3
10   chr7  110688042      111300115  NM_001244606     IMMP2L
12   chr9   74641752       74969383  NM_001102420     ZFAND5
13   chr9   74641752       74969383  NM_001128618    C9orf57
14   chr9   74641752       74969383  NM_001242505        GDA
17   chr9   74641752       74969383     NR_110952  LINC01504,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  102398617      102537778     NR_110211     OLFM3
1   chr2  110199174      110314771  NM_001099289    SH3RF3
2   chr2  110199174      110314771  NM_001321504    SEPT10
4   chr3  192426210      192658938     NM_004113     FGF12
5   chr3  192426210      192658938     NM_178496    MB21D2
6   chr4  121657637      121788283     NM_018699     PRDM5
7   chr6   22030814       22162005     NR_015410    CASC15
8   chr6   22030814       22162005     NR_034143     NBAT1
9   chr7  110537236      110910939  NM_001099658     LRRN3
10  chr7  110537236      110910939  NM_001244606    IMMP2L
12  chr7  110603582      110704316  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   28223113       28396282  NM_000275      OCA2
2  chr15   28223113       28396282  NM_004667     HERC2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241479500      241662558     NM_000143            FH
1    chr1  241479500      241662558  NM_001282773          RGS7
2   chr15   28701313       28995298  NM_001282468       GOLGA8M
3   chr15   28701313       28995298     NR_026589       WHAMMP2
4   chr15   28701313       28995298     NR_033351       GOLGA8F
5   chr15   28701313       28995298     NR_033353       GOLGA8G
6   chr15   28701313       28995298     NR_036443       HERC2P9
7   chr15   28701313       28995298     NR_039734     MIR4509-3
8   chr16   68534941       68777730  NM_001305204         ZFP90
10  chr16   68534941       68777730  NM_001317184          CDH1
11  chr16   68534941       68777730  NM_001317195          CDH3
12  chr16   68534941       68777730     NR_106988     MIR7641-2
13   chr4    9020263        9287204  NM_001256852      USP17L10
14   chr4    9020263        9287204  NM_001256853      USP17L12
16   chr4    9020263        9287204  NM_001256854      USP17L11
19   chr4    9020263        9287204  NM_001256855      USP17L13
20   chr4    9020263        9287204  NM_001256857      USP17L17
21   chr4    9020263        9287204  NM_001256860      USP17L19
22   chr4    9020263        9287204  NM_001256861      USP17L20
23   chr4    9020263        9287204  NM_001256894      USP17L15
24   chr9   67053925       67338468     NR_002817        AQP7P1
25   chr9   67053925       67338468     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   14752487       14853756  NM_001277323        NPIPA3
2   chr16   14752487       14853756  NM_001277324        NPIPA2
4   chr16   14752487       14853756     NM_016561          BFAR
5   chr16   14752487       14853756     NR_133651       PLA2G10
6   chr16   29548670       29885566  NM_001030288           SPN
7   chr16   29548670       29885566  NM_001114099        SEZ6L2
8   chr16   29548670       29885566  NM_001256269         KIF22
10  chr16   29548670       29885566  NM_001256443         PRRT2
11  chr16   29548670       29885566  NM_001276275           MAZ
12  chr16   29548670       29885566  NM_001286585         CDIPT
13  chr16   29548670       29885566  NM_001293204           MVP
14  chr16   29548670       29885566  NM_001318249          QPRT
18  chr16   29548670       29885566     NM_024516         PAGR1
19  chr16   29548670       29885566     NM_152338          ZG16
20  chr16   29548670       29885566     NM_175900      C16orf54
21  chr16   29548670       29885566     NR_015396     CDIPT-AS1
23  chr16   29548670       29885566     NR_049833     MIR3680-2
24  chr16   29548670       29885566     NR_135305        SMG1P2
26   chr5  106115718      109549885  NM_001163315        FBXL17
27   chr5  106115718      109549885  NM_001308028           FER
30   chr5  106115718      109549885     NM_001962         EFNA5
31   chr5  106115718      109549885     NM_002372        MAN2A1
33   chr5  106115718      109549885     NM_014819          PJA2
34   chr5  106115718      109549885     NR_033175  LOC100289673
35   chr5  106115718      109549885     NR_046368     LINC01023
36   chr5  106115718      109549885     NR_104671  LOC102467213,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   71107014       71351401  NM_001099642     CMTR2
1  chr16   71107014       71351401  NM_001198542     HYDIN,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr3  163686544      164129407  NR_031665   MIR1263
1  chr9   39012823       39261818  NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   14735291       14876404     NM_080676       MACROD2
1   chr20   14735291       14876404     NR_037841   MACROD2-AS1
2    chr7  110617927      111043934  NM_001099658         LRRN3
3    chr7  110617927      111043934  NM_001244606        IMMP2L
5    chr9   41917473       42045364     NR_003670        FGF7P3
6    chr9   41917473       42045364     NR_015363         GLIDR
9    chr9   41917473       42045364     NR_126048  LOC102724238
10   chr9   41917473       42045364     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr17   21347115       21540066  NM_001113434  C17orf51
1    chr5     118711         434637  NM_001080478   LRRC14B
2    chr5     118711         434637  NM_001242412      AHRR
3    chr5     118711         434637     NM_004168      SDHA
4    chr5     118711         434637     NM_013232     PDCD6
5    chr5     118711         434637     NM_052909  PLEKHG4B
6    chr5     118711         434637     NM_145265   CCDC127
8    chr5     118711         434637     NR_104613     HRAT5
9    chr6   65533238       65650270  NM_001142800       EYS
10   chr7    8613448        8762049     NM_152745     NXPH1
11   chr8  110263077      110379670  NM_001128211    NUDCD1
12   chr8  110263077      110379670  NM_001193557      ENY2
14   chr8  110263077      110379670     NM_177531   PKHD1L1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102399755      103698277     NM_001854       COL11A1
1    chr1  102399755      103698277     NR_110211         OLFM3
2   chr10    1576948        1684797     NM_018702        ADARB2
3   chr10    1576948        1684797     NR_033387    ADARB2-AS1
4   chr10   68538085       68673178  NM_001127384        CTNNA3
6   chr10   68538085       68673178     NR_111911  LOC101928961
7   chr12   85693410       85909543     NM_006982          ALX1
8    chr2   81615957       81814766     NR_110161  LOC100507201
9   chr22   17237010       17337774     NM_175878          XKR3
10  chr22   17237010       17337774     NR_003607       HSFY1P1
11   chr3  116124342      116855999  NM_001318915         LSAMP
12   chr3  116124342      116855999     NR_015391         TUSC7
13   chr3  116124342      116855999     NR_039649       MIR4447
14   chr3  116124342      116855999     NR_121607     LINC00901
15   chr5  119981248      120256537  NM_001300783         PRR16,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17     147914         453523  NM_001013672      C17orf97
1   chr17     147914         453523  NM_001128159         VPS53
2   chr17     147914         453523  NM_001190411        RPH3AL
4   chr17     147914         453523     NM_182705         RFLNB
5   chr17     147914         453523     NR_040011  LOC100506388
6   chr17     147914         453523     NR_136407  LOC105371430
7   chr20   14890607       15356867  NM_001033087       MACROD2
9   chr20   14890607       15356867     NR_037841   MACROD2-AS1
11   chr6   90277489       90378210  NM_001242809        ANKRD6
14   chr6   90277489       90378210     NM_014611          MDN1
15   chr6   90277489       90378210     NM_020466         LYRM2
17   chr6   90277489       90378210     NR_111915  LOC101929057
18   chr7   64119763       64838920  NM_001007253        ERV3-1
19   chr7   64119763       64838920  NM_001160183        ZNF138
20   chr7   64119763       64838920  NM_001282360        ZNF107
21   chr7   64119763       64838920  NM_001287532         ZNF92
22   chr7   64119763       64838920     NM_015852        ZNF117
23   chr7   64119763       64838920     NM_021148        ZNF273
24   chr7   64119763       64838920     NR_033416        CCT6P3
27   chr7   64119763       64838920     NR_106898       MIR6839
28   chr8   58208736       60482876     NM_000780        CYP7A1
29   chr8   58208736       60482876  NM_001077619        UBXN2B
30   chr8   58208736       60482876  NM_001144772         NSMAF
32   chr8   58208736       60482876  NM_001330537         SDCBP
35   chr8   58208736       60482876     NM_014729           TOX
36   chr8   58208736       60482876     NM_147189       FAM110B
37   chr8   58208736       60482876     NR_105005  LOC101929528
38   chr8   58208736       60482876     NR_125818  LOC101929488
39   chr8   58208736       60482876     NR_130934     LINC01602
40   chr8   58208736       60482876     NR_134276     LOC286178
41   chr9    7778617        8167372  NM_001318058       TMEM261,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   56542283       57502866  NM_001142770    PCDH15
3   chr10   56542283       57502866  NM_001190478  MTRNR2L5
4   chr15   59905120       60072571  NM_001320674     BNIP2
6   chr15   59905120       60072571  NM_001320929    GTF2A2
9   chr15   59905120       60072571     NM_004751     GCNT3
10  chr17   78108827       78213916     NM_000199      SGSH
11  chr17   78108827       78213916  NM_001166349  SLC26A11
12  chr17   78108827       78213916  NM_001257970    CARD14
13  chr17   78108827       78213916     NM_014740    EIF4A3
17   chr5  109781781      109952792  NM_001039763   TMEM232
18   chr5  109781781      109952792     NR_031644  MIR548F3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   88504981       88930861     NM_000101          CYBA
1   chr16   88504981       88930861     NM_000485          APRT
2   chr16   88504981       88930861     NM_000512         GALNS
3   chr16   88504981       88930861  NM_001012762          CTU2
4   chr16   88504981       88930861  NM_001127464        ZNF469
5   chr16   88504981       88930861  NM_001142864        PIEZO1
6   chr16   88504981       88930861  NM_001171815        RNF166
8   chr16   88504981       88930861  NM_001294328       PABPN1L
9   chr16   88504981       88930861  NM_001294340        ZC3H18
10  chr16   88504981       88930861  NM_001318532      TRAPPC2L
12  chr16   88504981       88930861     NM_002461           MVD
13  chr16   88504981       88930861     NM_013278         IL17C
14  chr16   88504981       88930861     NM_030928          CDT1
15  chr16   88504981       88930861     NM_153813         ZFPM1
16  chr16   88504981       88930861     NM_178310         SNAI3
18  chr16   88504981       88930861     NR_024399     SNAI3-AS1
20  chr16   88504981       88930861     NR_039873       MIR4722
21  chr16   88504981       88930861     NR_049821       MIR5189
22  chr16   88504981       88930861     NR_103774  LOC100289580
23  chr16   88504981       88930861     NR_120387     LOC339059
25   chr7  110329998      110433315  NM_001244606        IMMP2L
27   chr7  110672796      110789467  NM_001099658         LRRN3
28   chr7  110672796      110789467  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  102395530      102608930     NR_110211     OLFM3
1   chr13   54765228       56151690     NR_031628   MIR1297
2   chr13   54765228       56151690     NR_049804   MIR5007
3   chr14   45653550       45765563  NM_001308133     FANCM
4   chr14   45653550       45765563     NM_018353  MIS18BP1
5   chr16   21856233       22069344  NM_001164579  C16orf52
6   chr16   21856233       22069344  NM_001310148    NPIPB4
7   chr16   21856233       22069344     NM_003366    UQCRC2
8   chr16   21856233       22069344     NM_173806     PDZD9
9    chr2   52885754       52989264     NR_039630   MIR4431
10   chr8   13713375       14218729     NM_139167      SGCZ,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  112446895      112582890  NM_001270945    LOC643355
1    chr1  112446895      112582890     NM_172198        KCND3
2    chr1  112446895      112582890     NR_046619    KCND3-AS1
3   chr10   81474002       81585452     NR_120611   NUTM2B-AS1
6   chr11    5397376        5565662  NM_001004754       OR51I2
7   chr11    5397376        5565662  NM_001004756       OR51M1
8   chr11    5397376        5565662  NM_001004757       OR51Q1
9   chr11    5397376        5565662  NM_001005163       OR52D1
10  chr11    5397376        5565662  NM_001005288       OR51I1
11  chr11    5397376        5565662  NM_001005567       OR51B5
12  chr11    5397376        5565662     NM_017481       UBQLN3
13  chr11    5397376        5565662     NM_145053       UBQLNL
15  chr11    5397376        5565662     NR_133006       OLFM5P
16  chr20   14762131       14916447     NM_080676      MACROD2
17  chr20   14762131       14916447     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81495298       82251975     NM_000429         MAT1A
1   chr10   81495298       82251975  NM_001012973         PLAC9
2   chr10   81495298       82251975  NM_001128309       TSPAN14
3   chr10   81495298       82251975  NM_001243778       FAM213A
6   chr10   81495298       82251975  NM_001269053         DYDC1
7   chr10   81495298       82251975  NM_001270041         DYDC2
9   chr10   81495298       82251975  NM_001270367       TMEM254
12  chr10   81495298       82251975  NM_001278407        ANXA11
15  chr10   81495298       82251975     NM_003019         SFTPD
17  chr10   81495298       82251975     NR_002724         MBL1P
18  chr10   81495298       82251975     NR_027431   TMEM254-AS1
19  chr10   81495298       82251975     NR_029407     LOC642361
20  chr10   81495298       82251975     NR_033857       BMS1P21
21  chr10   81495298       82251975     NR_038464     LINC00857
22  chr10   81495298       82251975     NR_120611    NUTM2B-AS1
25  chr10   81495298       82251975     NR_136612  LOC100130698
27  chr15   77876509       78465587  NM_001101404         SH2D7
28  chr15   77876509       78465587  NM_001199377        ACSBG1
29  chr15   77876509       78465587  NM_001301186        LINGO1
38  chr15   77876509       78465587  NM_001301224          CIB2
39  chr15   77876509       78465587     NM_005530         IDH3A
40  chr15   77876509       78465587     NM_015079       TBC1D2B
42  chr15   77876509       78465587     NR_026998      LOC91450
43  chr15   77876509       78465587     NR_027024     LOC645752
44  chr15   77876509       78465587     NR_045123    LINGO1-AS1
45  chr15   77876509       78465587     NR_120361    LINGO1-AS2
46   chr4   75375091       75569422     NM_001657          AREG
47   chr7     131524         288823     NM_020223        FAM20C
48   chr7     131524         288823     NR_108065  LOC100507642
49   chr7     131524         288823     NR_134324  LOC105375115
50   chr7     131524         288823     NR_134325  LOC102723672,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr14   26995801       27111486  NM_002515     NOVA1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   59086613       59337201  NM_001085487         MYSM1
1    chr1   59086613       59337201     NM_002228           JUN
2    chr1   59086613       59337201     NR_034014     LINC01135
3   chr12   72694201       72803477     NM_013381         TRHDE
4   chr14   26642957       27391857     NM_002515         NOVA1
6   chr14   26642957       27391857     NR_036193       MIR4307
7   chr14   26642957       27391857     NR_110033  LOC101927062
8   chr14   26642957       27391857     NR_110041     MIR4307HG
9   chr14   26642957       27391857     NR_110556  LOC102724890
10  chr16   83064911       83375100  NM_001220488         CDH13
12  chr20   14668615       14870032     NM_080676       MACROD2
13  chr20   14668615       14870032     NR_037841   MACROD2-AS1
14   chr3  155990136      156193543  NM_001308217        KCNAB1
19   chr3  155990136      156193543     NR_046618    KCNAB1-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   10522156       10793152  NM_001256160    ATF7IP2
1  chr16   10522156       10793152     NM_001424       EMP2
2  chr16   10522156       10793152     NM_144674      TEKT5
4   chr4   16179361       16299847     NM_153365      TAPT1
5   chr4   16179361       16299847     NR_027696  TAPT1-AS1
6   chr6  162563570      162669320     NM_013988      PARK2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr14   47870133       48005442  NM_001113498        MDGA2
1  chr16   85289243       85414301     NR_038859    LINC00311
2  chr16   85289243       85414301     NR_049816      MIR5093
3   chr2   84645556       84775814     NM_001370        DNAH6
4   chr2   84645556       84775814     NM_003849       SUCLG1
5  chr20   14849327       15164650     NM_080676      MACROD2
6  chr20   14849327       15164650     NR_037841  MACROD2-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   41657525       41783570  NM_001164595    PDZRN4,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11    4468194        4598256  NM_001004137    OR52M1
1  chr11    4468194        4598256  NM_001005171    OR52K1
2  chr11    4468194        4598256  NM_001005172    OR52K2
3  chr11    4468194        4598256     NM_144663  C11orf40
4  chr12   62429754       62573179     NM_178539   FAM19A2
5   chr3   41369166       41494241  NM_001322500      ULK4,   chrom  cnv_start  cnv_terminate    tx_name   gene_name
0  chr4   69286507       69489798  NM_001077     UGT2B17
1  chr4   69286507       69489798  NM_014058   TMPRSS11E
2  chr7    5642911        5743184  NM_003088       FSCN1
3  chr7    5642911        5743184  NM_207116      RNF216
4  chr7    5642911        5743184  NR_046834  RNF216-IT1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   46926867       47108328  NM_001286761     RUBCNL
2   chr13   46926867       47108328     NR_120426  LINC01198
3   chr22   19905156       20050585     NM_000754       COMT
6   chr22   19905156       20050585  NM_001282512     TXNRD2
7   chr22   19905156       20050585  NM_001283116     TANGO2
10  chr22   19905156       20050585     NM_001670      ARVCF
13  chr22   19905156       20050585     NR_029706     MIR185
14  chr22   19905156       20050585     NR_039918    MIR4761, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67623148       67754940  NM_001127384        CTNNA3
2   chr13   67262292       67697418     NM_020403         PCDH9
3   chr13   67262292       67697418     NR_046527     PCDH9-AS2
4   chr13   67262292       67697418     NR_046636     PCDH9-AS3
5   chr13   67262292       67697418     NR_046637     PCDH9-AS4
6   chr13   69554744       70047952     NR_125752     LINC00383
7   chr15   30226475       30356482  NM_001301025          TJP1
8   chr17     166475         472602  NM_001013672      C17orf97
9   chr17     166475         472602  NM_001128159         VPS53
10  chr17     166475         472602  NM_001190411        RPH3AL
12  chr17     166475         472602     NM_182705         RFLNB
13  chr17     166475         472602     NR_040011  LOC100506388
14  chr17     166475         472602     NR_136407  LOC105371430
15  chr22   20073736       20235514  NM_001190326         DGCR8
16  chr22   20073736       20235514  NM_001243537       CCDC188
17  chr22   20073736       20235514  NM_001278639        RANBP1
20  chr22   20073736       20235514     NM_013373        ZDHHC8
21  chr22   20073736       20235514     NM_022727        TRMT2A
22  chr22   20073736       20235514     NM_023004         RTN4R
23  chr22   20073736       20235514     NR_026919     LINC00896
24  chr22   20073736       20235514     NR_038460     LOC284865
25  chr22   20073736       20235514     NR_106874       MIR6816,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152437840      152598862     NM_019060         CRCT1
1    chr1  152437840      152598862     NM_032563         LCE3D
2    chr1  152437840      152598862     NM_178431         LCE3A
3    chr1  152437840      152598862     NM_178433         LCE3B
4    chr1  152437840      152598862     NM_178434         LCE3C
5    chr1  152437840      152598862     NM_178435         LCE3E
6    chr1  152437840      152598862     NM_178438         LCE5A
7   chr11  134218903      135740332     NM_054025        B3GAT1
8   chr11  134218903      135740332     NM_138342        GLB1L2
9   chr11  134218903      135740332     NR_033852     LOC283177
10  chr11  134218903      135740332     NR_135050  LOC100507548
11  chr16   21534718       21671742  NM_001077180        METTL9
13  chr16   21534718       21671742     NM_005849         IGSF6
14  chr16   21534718       21671742     NR_110930  LOC101927814
15   chr6  162791656      162964396     NM_013988         PARK2
16   chr7   75323910       75548009     NM_000941           POR
17   chr7   75323910       75548009  NM_001040457        RHBDD2
18   chr7   75323910       75548009  NM_001243198          HIP1
19   chr7   75323910       75548009     NM_002991         CCL24
20   chr7   75323910       75548009     NM_006072         CCL26
21   chr7   75323910       75548009     NR_039795       MIR4651
22   chr8    3923167        5547123     NM_033225         CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   79028368       79225903     NM_006417         IFI44
1    chr1   79028368       79225903     NM_006820        IFI44L
3    chr1  102396897      102535766     NR_110211         OLFM3
4    chr1  143151272      143266483     NR_110761  LOC102723769
5   chr12    9384797        9526257     NR_024374     LOC642846
6   chr12    9384797        9526257     NR_036466     LINC00987
7   chr12    9384797        9526257     NR_040112         A2MP1
8   chr12    9384797        9526257     NR_120479  LOC101930452
9   chr12    9384797        9526257     NR_120481  LOC101928030
10  chr12    9384797        9526257     NR_128710     MIR1244-4
12  chr20   25320111       25583603  NM_001042472        ABHD12
13  chr20   25320111       25583603  NM_001318226          NINL
15  chr20   25320111       25583603     NM_021067         GINS1
16   chr6  162561432      162712817     NM_013988         PARK2
17   chr7    3368804        3746509     NM_152744          SDK1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   30270123       30417414  NM_001282472   GOLGA8J
1  chr15   30270123       30417414     NR_026859    ULK4P3
2   chr4   94202115       94309027     NM_001510     GRID2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   47798038       47928964  NM_001113498     MDGA2
3   chr6  162493313      162704371     NM_013988     PARK2,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   35669650       35814224     NR_039629  MIR548AD
1  chr7  110554039      110812223  NM_001099658     LRRN3
2  chr7  110554039      110812223  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   16561871       16973613  NM_001114600         SZRD1
1   chr1   16561871       16973613  NM_001145277        NECAP2
2   chr1   16561871       16973613  NM_001310155       FAM231B
3   chr1   16561871       16973613     NM_017940         NBPF1
4   chr1   16561871       16973613     NM_018994        FBXO42
5   chr1   16561871       16973613     NM_030907          RSG1
6   chr1   16561871       16973613     NM_198546       SPATA21
7   chr1   16561871       16973613     NR_023386       CROCCP3
8   chr1   16561871       16973613     NR_026752       CROCCP2
9   chr1   16561871       16973613     NR_027504        MST1P2
10  chr1   16561871       16973613     NR_037446       MIR3675
11  chr1   16561871       16973613     NR_135764  LOC100132147
12  chr1   16561871       16973613     NR_135765     LOC440570
13  chr2   97151548       97337472  NM_001115016        KANSL3
14  chr2   97151548       97337472  NM_001285485        NEURL3
15  chr2   97151548       97337472  NM_001293083        FER1L5
16  chr2   97151548       97337472  NM_001319085        ARID5A
20  chr2   97151548       97337472     NR_135564  LOC105373496
21  chr3   17380325       17601949  NM_001134381        TBC1D5
23  chr8  124941712      125350577  NM_001039112        FER1L6
24  chr8  124941712      125350577     NM_194291        TMEM65
25  chr8  124941712      125350577     NR_040044    FER1L6-AS1
26  chr8  124941712      125350577     NR_103547    FER1L6-AS2
27  chr8  124941712      125350577     NR_125420  LOC101927588,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr3  117747828      119326827  NM_001015887        IGSF11
1   chr3  117747828      119326827     NM_001125         ADPRH
2   chr3  117747828      119326827  NM_001293225         PLA1A
3   chr3  117747828      119326827     NM_005191          CD80
4   chr3  117747828      119326827     NM_006952         UPK1B
6   chr3  117747828      119326827     NM_016589       TIMMDC1
7   chr3  117747828      119326827     NM_018266       TMEM39A
8   chr3  117747828      119326827     NM_020754      ARHGAP31
9   chr3  117747828      119326827     NM_152305       POGLUT1
11  chr3  117747828      119326827     NM_152539       C3orf30
12  chr3  117747828      119326827     NM_212543       B4GALT4
13  chr3  117747828      119326827     NR_046230    IGSF11-AS1
14  chr3  117747828      119326827     NR_046574   B4GALT4-AS1
15  chr3  117747828      119326827     NR_046748  ARHGAP31-AS1
16  chr3  117747828      119326827     NR_135547  LOC105374060
17  chr3  117747828      119326827     NR_135573  LOC101926968
18  chr8    6726175        6861939  NM_001302265        DEFA1B
19  chr8    6726175        6861939     NM_001925         DEFA4
20  chr8    6726175        6861939     NM_001926         DEFA6
21  chr8    6726175        6861939     NM_004084         DEFA1
22  chr8    6726175        6861939     NM_005218         DEFB1
23  chr8    6726175        6861939     NR_029386       DEFA10P
24  chr8    6726175        6861939     NR_036686        DEFT1P
25  chr8    6726175        6861939     NR_073407        DEFA8P
26  chr8    6726175        6861939     NR_073408        DEFA9P
27  chr9  116805502      116909817  NM_001318041        ZNF618
28  chr9  116805502      116909817     NM_001633          AMBP
29  chr9  116805502      116909817     NM_138424         KIF12,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   27657156       27789568  NM_001034842    PTCHD3
1   chr17   21266244       21667442  NM_001113434  C17orf51
2   chr17   21266244       21667442  NM_001194958    KCNJ18
3   chr17   21266244       21667442     NM_021012    KCNJ12
4   chr18   35143436       35244480     NM_020180     CELF4
5   chr18   35143436       35244480     NR_036202   MIR4318
6    chr2  242464833      242578235  NM_001164356     THAP4
8    chr2  242464833      242578235     NM_032515       BOK
9    chr2  242464833      242578235     NM_178326     ATG4B
10   chr2  242464833      242578235     NR_033346   BOK-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   37390098       37541074     NM_052997   ANKRD30A
1   chr11   83535665       83636709  NM_001142699       DLG2
5   chr13   63310350       63606522     NR_047029  LINC00448
8   chr16   68628071       68902048  NM_001317184       CDH1
9   chr16   68628071       68902048  NM_001317195       CDH3
10  chr16   68628071       68902048     NM_024562     TANGO6
11  chr16   68628071       68902048     NR_106988  MIR7641-2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   97189230       97324994  NM_001115016        KANSL3
1  chr2   97189230       97324994  NM_001293083        FER1L5
2  chr2   97189230       97324994  NM_001319085        ARID5A
5  chr2   97189230       97324994     NR_135564  LOC105373496,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28580096       28708497     NR_033351       GOLGA8F
1   chr15   28580096       28708497     NR_033353       GOLGA8G
2   chr15   28580096       28708497     NR_039734     MIR4509-3
3   chr15   82785966       82915625  NM_001164465     GOLGA6L10
4   chr15   82785966       82915625  NM_001291420      GOLGA6L9
5   chr15   82785966       82915625     NR_026811     GOLGA2P10
6   chr15   82785966       82915625     NR_045529     ADAMTS7P1
7   chr15   82785966       82915625     NR_111943         RPS17
9   chr15   82785966       82915625     NR_111962    GOLGA6L17P
10  chr21   22597697       22733015     NM_004540         NCAM2
11   chr5   59619492       62169412     NM_000082         ERCC8
13   chr5   59619492       62169412  NM_001048249        SMIM15
14   chr5   59619492       62169412  NM_001134779         IPO11
15   chr5   59619492       62169412  NM_001145208       DEPDC1B
16   chr5   59619492       62169412  NM_001165899         PDE4D
17   chr5   59619492       62169412     NM_004520         KIF2A
18   chr5   59619492       62169412     NM_014473         DIMT1
20   chr5   59619492       62169412     NM_020928        ZSWIM6
21   chr5   59619492       62169412     NM_024930        ELOVL7
22   chr5   59619492       62169412     NM_173667       C5orf64
23   chr5   59619492       62169412     NM_174889       NDUFAF2
24   chr5   59619492       62169412     NM_181506        LRRC70
25   chr5   59619492       62169412     NR_024617         PART1
28   chr5   59619492       62169412     NR_073584  IPO11-LRRC70
29   chr5   59619492       62169412     NR_105000  LOC100506526
30   chr5   59619492       62169412     NR_109908  CTC-436P18.1
31   chr5   59619492       62169412     NR_109910  LOC101928651
33   chr7  110650882      110782073  NM_001099658         LRRN3
34   chr7  110650882      110782073  NM_001244606        IMMP2L
36   chr9   38992243       39186482     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   71719376       72114200     NM_080759      DACH1
1  chr13   71719376       72114200     NR_047699  LINC00348
2   chr5   16029319       16253228  NM_001102562    MARCH11
3   chr6  146486853      146638227  NM_001278064       GRM1
5   chr9    9852246       10174521     NM_002839      PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20686130       21097872  NM_001145004      GOLGA6L6
1   chr15   20686130       21097872  NM_001277303        POTEB2
2   chr15   20686130       21097872     NM_207355        POTEB3
3   chr15   20686130       21097872     NR_027411      GOLGA8CP
4   chr15   20686130       21097872     NR_027992        NBEAP1
5   chr15   20686130       21097872     NR_036062     MIR3118-2
6   chr15   20686130       21097872     NR_036432       HERC2P3
8    chr2   34546234       35752314     NR_039629      MIR548AD
9    chr2   34546234       35752314     NR_126404     LINC01320
10   chr5  127770624      127973453     NM_001999          FBN2
11   chr9   44295500       44541946     NR_121564  LOC101927827
12   chr9   44295500       44541946     NR_126050  LOC103908605,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   20954270       21235139  NM_001277303     POTEB2
1  chr15   20954270       21235139     NM_207355     POTEB3
2  chr15   20954270       21235139     NR_027992     NBEAP1
3  chr15   20954270       21235139     NR_028506      NF1P2
4  chr15   20954270       21235139     NR_036062  MIR3118-2
5  chr15   20954270       21235139     NR_040094  LINC01193
6  chr15   20954270       21235139     NR_049895  MIR5701-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67292124       68609923     NM_000695       ALDH3B2
1   chr11   67292124       68609923     NM_000852         GSTP1
3   chr11   67292124       68609923  NM_001031847         CPT1A
4   chr11   67292124       68609923  NM_001039656        TESMIN
5   chr11   67292124       68609923  NM_001161473       ALDH3B1
6   chr11   67292124       68609923  NM_001164164        PPP6R3
7   chr11   67292124       68609923  NM_001166102        NDUFV1
8   chr11   67292124       68609923  NM_001243750         NUDT8
10  chr11   67292124       68609923  NM_001300907         KMT5B
14  chr11   67292124       68609923     NM_002335          LRP5
15  chr11   67292124       68609923     NM_002496        NDUFS8
17  chr11   67292124       68609923     NM_005995         TBX10
18  chr11   67292124       68609923     NM_006019        TCIRG1
20  chr11   67292124       68609923     NM_015973           GAL
22  chr11   67292124       68609923     NM_022338      C11orf24
23  chr11   67292124       68609923     NM_030930       UNC93B1
24  chr11   67292124       68609923     NM_080658          ACY3
26  chr11   67292124       68609923     NM_212469          CHKA
27  chr11   67292124       68609923     NR_024249      FAM86C2P
28  chr11   67292124       68609923     NR_033791        DOC2GP
29  chr11   67292124       68609923     NR_039840       MIR4691
30  chr11   67292124       68609923     NR_106811       MIR6753
31  chr11   67292124       68609923     NR_106963       MIR7113
32  chr11   67292124       68609923     NR_130935      C11orf72
33  chr18   63480972       63705026  NM_001317214          CDH7
36   chr2   97479765       97710544  NM_001122646       FAM178B
38   chr2   97479765       97710544     NM_016466       ANKRD39
40   chr2   97479765       97710544     NM_017623         CNNM3
41   chr2   97479765       97710544     NM_017789        SEMA4C
42   chr2   97479765       97710544     NM_144994       ANKRD23
43   chr2   97479765       97710544     NR_110209  LOC101927053,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   89002123       89127138     NR_024397    NUTM2A-AS1
1   chr10   89002123       89127138     NR_029408     LINC00863
2   chr10   89002123       89127138     NR_075100        NUTM2D
4   chr12   72596286       72802512     NM_013381         TRHDE
5   chr12   72596286       72802512     NR_026836     TRHDE-AS1
7   chr13   40321766       40583519  NM_001145079          COG6
9    chr2   97230714       97656594  NM_001115016        KANSL3
10   chr2   97230714       97656594  NM_001122646       FAM178B
12   chr2   97230714       97656594  NM_001293083        FER1L5
13   chr2   97230714       97656594  NM_001322354        LMAN2L
14   chr2   97230714       97656594     NM_016466       ANKRD39
16   chr2   97230714       97656594     NM_017623         CNNM3
17   chr2   97230714       97656594     NM_017789        SEMA4C
18   chr2   97230714       97656594     NM_020184         CNNM4
20   chr2   97230714       97656594     NM_144994       ANKRD23
21   chr2   97230714       97656594     NR_036074       MIR3127
23   chr2   97230714       97656594     NR_110209  LOC101927053,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   68550606       68888278  NM_001305204         ZFP90
2   chr16   68550606       68888278  NM_001317184          CDH1
3   chr16   68550606       68888278  NM_001317195          CDH3
4   chr16   68550606       68888278     NM_024562        TANGO6
5   chr16   68550606       68888278     NR_106988     MIR7641-2
6    chr2  242431066      242547759  NM_001164356         THAP4
7    chr2  242431066      242547759  NM_001271978         STK25
10   chr2  242431066      242547759     NM_014808         FARP2
12   chr2  242431066      242547759     NM_032515           BOK
13   chr2  242431066      242547759     NR_033346       BOK-AS1
14   chr7   75770655       76569549  NM_001102594          DTX2
16   chr7   75770655       76569549  NM_001110199         SRRM3
17   chr7   75770655       76569549  NM_001110354           ZP3
18   chr7   75770655       76569549     NM_001540         HSPB1
20   chr7   75770655       76569549     NM_012479         YWHAG
21   chr7   75770655       76569549     NM_030570         UPK3B
22   chr7   75770655       76569549     NM_080744         SSC4D
23   chr7   75770655       76569549     NM_152992        POMZP3
24   chr7   75770655       76569549     NR_003262        FDPSP2
25   chr7   75770655       76569549     NR_029411  LOC100133091
26   chr9   67015536       67428652     NR_002817        AQP7P1
27   chr9   67015536       67428652     NR_046175     LOC286297
28   chr9   67015536       67428652     NR_135597  LOC101928195
29   chr9   67015536       67428652     NR_136299  LOC101929583
30   chr9   67015536       67428652     NR_136300  LOC102724580,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  110532618      110671516  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr17   14060246       14313608  NM_001007530    CDRT15
1  chr17   14060246       14313608     NM_001303     COX10
2  chr17   14060246       14313608     NM_006041  HS3ST3B1
3  chr17   14060246       14313608     NR_026880  MGC12916
4  chr20   14635947       14751078     NM_080676   MACROD2
5   chr4  108650289      108763813  NM_001136258     SGMS2,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr2   52950881       54369002  NM_001164165  GPR75-ASB3
1   chr2   52950881       54369002  NM_001201965        ASB3
2   chr2   52950881       54369002  NM_001320587       ACYP2
5   chr2   52950881       54369002  NM_001346127       CHAC2
6   chr2   52950881       54369002     NM_006794       GPR75
7   chr2   52950881       54369002     NM_014614       PSME4
8   chr2   52950881       54369002     NM_015701      ERLEC1
11  chr2   52950881       54369002     NR_037453     MIR3682
12  chr9   38992354       39174900     NM_033655     CNTNAP3, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  244266911      244533902  NM_001012970    C1orf100
1   chr12   71434885       71741156     NM_004616      TSPAN8
2    chr7    8898025       10568671     NR_002790        PER4
3    chr7  110739707      110891639  NM_001099658       LRRN3
4    chr7  110739707      110891639  NM_001244606      IMMP2L
6    chr8    7035061        7404320  NM_001040705    DEFB107B
7    chr8    7035061        7404320  NM_001081551    DEFB103A
8    chr8    7035061        7404320  NM_001164457     ZNF705G
9    chr8    7035061        7404320  NM_001205266      DEFB4B
10   chr8    7035061        7404320  NM_001256873     USP17L1
11   chr8    7035061        7404320  NM_001256874     USP17L4
12   chr8    7035061        7404320  NM_001282478     PRR23D2
13   chr8    7035061        7404320  NM_001282479     PRR23D1
14   chr8    7035061        7404320     NM_058200     SPAG11B
18   chr8    7035061        7404320     NM_080389    DEFB104A
19   chr8    7035061        7404320     NM_152250    DEFB105A
20   chr8    7035061        7404320     NM_152251    DEFB106A
21   chr8    7035061        7404320     NR_003668  DEFB109P1B
22   chr8    7035061        7404320     NR_027000   LINC00965
25   chr8    7035061        7404320     NR_027423      FAM66B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  135211564      135345300     NM_000773     CYP2E1
1   chr10  135211564      135345300  NM_001012508       SPRN
2   chr10  135211564      135345300     NM_138384       MTG1
3   chr10  135211564      135345300     NR_002934     SCART1
4   chr11   81838034       82141719     NR_120571  MIR4300HG
5    chr4  128702922      128814372  NM_001190801       PLK4
6    chr4  128702922      128814372  NM_001317381     HSPA4L
10   chr7  110703817      110970840  NM_001099658      LRRN3
11   chr7  110703817      110970840  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   40927015       41439236     NR_109757  LOC644919
2   chr16    8571253        8701561  NM_001146336    TMEM114
6   chr16   14816843       14923600  NM_001277323     NPIPA3
8   chr16   14816843       14923600  NM_001277324     NPIPA2
10  chr16   14816843       14923600     NR_023387    ABCC6P2
11   chr2   51210804       51405714  NM_001330079      NRXN1
14   chr2   51210804       51405714     NR_135237  LOC730100
15   chr9   24349215       24633758  NM_001271706     IZUMO3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr6   97434340       97570849  NM_001286251    KLHL32
4  chr6   97434340       97570849     NR_031679  MIR548H3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  111190383      112367804  NM_001008541       MXI1
1   chr10  111190383      112367804     NM_001121       ADD3
4   chr10  111190383      112367804  NM_001324128    XPNPEP1
6   chr10  111190383      112367804     NM_004419      DUSP5
7   chr10  111190383      112367804     NM_005445       SMC3
8   chr10  111190383      112367804     NM_005871     SMNDC1
11  chr10  111190383      112367804     NR_038943   ADD3-AS1
12  chr11   67250079       67410347     NM_000852      GSTP1
13  chr11   67250079       67410347  NM_001166102     NDUFV1
14  chr11   67250079       67410347  NM_001243750      NUDT8
15  chr11   67250079       67410347  NM_001302959        AIP
16  chr11   67250079       67410347  NM_001318496      CABP2
18  chr11   67250079       67410347     NM_004910    PITPNM1
19  chr11   67250079       67410347     NM_005851    CDK2AP2
20  chr11   67250079       67410347     NM_005995      TBX10
21  chr11   67250079       67410347     NM_080658       ACY3
23  chr11   67250079       67410347     NR_033791     DOC2GP
25  chr11   67250079       67410347     NR_106810    MIR6752
26  chr11   67250079       67410347     NR_130935   C11orf72
27   chr6    4256302        4461308     NR_106988  MIR7641-2
28   chr9    4503897        4607333  NM_001039395    SPATA6L
29   chr9    4503897        4607333     NM_004170     SLC1A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48440264       48707255  NM_001005512        OR4A47
1   chr16   22221806       22341808  NM_001258033        POLR3E
2   chr16   22221806       22341808     NM_013302         EEF2K
3   chr20   14626512       14859013     NM_080676       MACROD2
4    chr6  162518960      163840315  NM_001080378         PACRG
6    chr6  162518960      163840315     NM_006775           QKI
7    chr6  162518960      163840315     NM_013988         PARK2
8    chr6  162518960      163840315     NR_028390     PACRG-AS1
9    chr6  162518960      163840315     NR_033862  DKFZp451B082
10   chr6  162518960      163840315     NR_037593          CAHM
11   chr6  162518960      163840315     NR_110871     PACRG-AS2
13   chr6  162518960      163840315     NR_122120     PACRG-AS3
14   chr6  162676853      162799782     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr12   72644512       73209034     NM_013381        TRHDE
1   chr12   72644512       73209034     NR_026836    TRHDE-AS1
3   chr12  130268663      130488279     NM_133448     TMEM132D
4   chr15   20979906       21307537  NM_001277303       POTEB2
5   chr15   20979906       21307537     NM_207355       POTEB3
6   chr15   20979906       21307537     NR_028506        NF1P2
7   chr15   20979906       21307537     NR_036062    MIR3118-2
8   chr15   20979906       21307537     NR_040094    LINC01193
9   chr15   20979906       21307537     NR_049895    MIR5701-2
11  chr20   14702253       14960437     NM_080676      MACROD2
12  chr20   14702253       14960437     NR_037841  MACROD2-AS1
14   chr6  116576726      116755864  NM_001322939          DSE
17   chr6  116576726      116755864     NM_003309       TSPYL1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1   12827044       12956227  NM_001009611      PRAMEF4
1   chr1   12827044       12956227  NM_001013631     HNRNPCL1
2   chr1   12827044       12956227  NM_001080830     PRAMEF12
3   chr1   12827044       12956227  NM_001146181     HNRNPCL3
4   chr1   12827044       12956227  NM_001146344     PRAMEF11
5   chr1   12827044       12956227  NM_001294139      PRAMEF1
6   chr1   12827044       12956227  NM_001302551     HNRNPCL4
8   chr1   12827044       12956227     NM_023014      PRAMEF2
9   chr6  146407505      146667036  NM_001278064         GRM1
11  chr7   64079451       64385578  NM_001160183       ZNF138
12  chr7   64079451       64385578  NM_001282360       ZNF107
13  chr7   64079451       64385578     NM_021148       ZNF273
16  chr7   64079451       64385578     NR_106898      MIR6839
17  chr9   12095143       12827983     NM_000550        TYRP1
18  chr9   12095143       12827983     NM_203403      LURAP1L
19  chr9   12095143       12827983     NR_125775  LURAP1L-AS1
20  chr9  108462173      108601101     NM_018112      TMEM38B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   14717257       14819856     NM_080676       MACROD2
1   chr21   23469051       23596889     NR_038400     LINC00308
2   chr21   23469051       23596889     NR_109959  LOC101927843
3    chr4    9008301        9336844  NM_001242326      USP17L25
6    chr4    9008301        9336844  NM_001256852      USP17L10
7    chr4    9008301        9336844  NM_001256853      USP17L12
9    chr4    9008301        9336844  NM_001256854      USP17L11
12   chr4    9008301        9336844  NM_001256855      USP17L13
13   chr4    9008301        9336844  NM_001256857      USP17L17
14   chr4    9008301        9336844  NM_001256860      USP17L19
15   chr4    9008301        9336844  NM_001256861      USP17L20
16   chr4    9008301        9336844  NM_001256894      USP17L15
17   chr9     306393         484224  NM_001190458         DOCK8
18   chr9     306393         484224  NM_001256876         KANK1,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr19   20212483       20359427  NM_007138      ZNF90
1  chr19   20212483       20359427  NM_052852     ZNF486
2   chr4   69307707       69843531  NM_001075    UGT2B10
3   chr4   69307707       69843531  NM_001076    UGT2B15
4   chr4   69307707       69843531  NM_001077    UGT2B17
5   chr4   69307707       69843531  NM_014058  TMPRSS11E
6   chr4   69307707       69843531  NM_024743     UGT2A3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    7144795        7291713  NM_001018039        SFMBT2
2   chr10    7144795        7291713     NR_132972      SNORD129
3   chr15  100127106      100357055  NM_001130928         MEF2A
4   chr15  100127106      100357055  NM_001284417        LYSMD4
7   chr15  100127106      100357055     NR_003260       DNM1P46
8   chr15  100127106      100357055     NR_135737     LOC400464
9    chr3   85422422       88844608     NM_000306        POU1F1
10   chr3   85422422       88844608     NM_000866         HTR1F
11   chr3   85422422       88844608  NM_001167675         CADM2
12   chr3   85422422       88844608  NM_001195308        CGGBP1
13   chr3   85422422       88844608  NM_001244644        CHMP2B
15   chr3   85422422       88844608  NM_001320493         VGLL3
21   chr3   85422422       88844608     NM_018293        ZNF654
23   chr3   85422422       88844608     NM_173824       C3orf38
24   chr3   85422422       88844608     NR_039958       MIR4795
25   chr3   85422422       88844608     NR_046752     CADM2-AS2
26   chr3   85422422       88844608     NR_047469     LINC00506
27   chr3   85422422       88844608     NR_049870       MIR5688
29   chr3   85422422       88844608     NR_135563  LOC101927494
30   chr5   20460962       20606387  NM_001291956         CDH18
31   chr6   80940663       81084441     NM_000056        BCKDHB,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr18     791542         929225  NM_001099733   ADCYAP1
2  chr18     791542         929225     NM_005433      YES1
3  chr20   25386515       25491855  NM_001318226      NINL
4  chr20   25386515       25491855     NM_021067     GINS1
5   chr7  110669007      110931867  NM_001099658     LRRN3
6   chr7  110669007      110931867  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr15   97556900       98849553  NM_183376        ARRDC4
1  chr15   97556900       98849553  NR_024172     LINC00923
2  chr15   97556900       98849553  NR_110756  LOC101927310
3  chr15   97556900       98849553  NR_120324  LOC101927286
4  chr15   97556900       98849553  NR_120325     LINC01582
5   chr5  104190830      104564533  NR_000039       RAB9BP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   39107353       39223516     NR_039982     LINC00639
1   chr17   63444720       63580038     NM_004655         AXIN2
2   chr17   63444720       63580038     NR_131984        CRAT40
3   chr17   78205376       78496523  NM_001164637         ENDOV
5   chr17   78205376       78496523  NM_001166349      SLC26A11
6   chr17   78205376       78496523  NM_001256071        RNF213
7   chr17   78205376       78496523     NM_002522         NPTX1
9   chr17   78205376       78496523     NR_029376  LOC100294362
10  chr17   78205376       78496523     NR_039883       MIR4730
11   chr7  110541078      110702675  NM_001244606        IMMP2L
13   chr7  110566329      110817249  NM_001099658         LRRN3
14   chr7  110566329      110817249  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145067899      145225510  NM_001277444         NBPF9
1    chr1  145067899      145225510  NM_001278267        NBPF20
2    chr1  145067899      145225510     NM_004892        SEC22B
3    chr1  145067899      145225510     NM_022359       PDE4DIP
4    chr1  145067899      145225510     NM_203458      NOTCH2NL
5   chr10   38900575       39002584     NR_045000      ACTR3BP5
6    chr3    2325561        2441963  NM_001206955         CNTN4
8    chr5     135803         248158  NM_001080478       LRRC14B
9    chr5     135803         248158     NM_004168          SDHA
10   chr5     135803         248158     NM_052909      PLEKHG4B
11   chr5     135803         248158     NM_145265       CCDC127
12   chr5  109853935      110194693  NM_001039763       TMEM232
13   chr5  109853935      110194693  NM_001303250      SLC25A46
15   chr7  146499058      146887238     NM_014141       CNTNAP2
16   chr7  146499058      146887238     NR_110829  LOC101928700,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr11   79571769       80913549  NR_120570  LOC101928944
1   chr9   39095931       39198133  NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30219200       30507467  NM_001282472       GOLGA8J
1   chr15   30219200       30507467  NM_001301025          TJP1
2   chr15   30219200       30507467     NR_026771  DKFZP434L187
3   chr15   30219200       30507467     NR_026859        ULK4P3
4   chr15   30219200       30507467     NR_033933       GOLGA8T
5   chr22   17207608       17418218     NM_175878          XKR3
6   chr22   17207608       17418218     NR_003607       HSFY1P1
7   chr22   17207608       17418218     NR_134584  LOC101929350
8    chr6   38039190       38573751  NM_001172418         BTBD9
9    chr6   38039190       38573751     NM_021943        ZFAND3
11   chr6   38039190       38573751     NR_144472     BTBD9-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12     703804         808090  NM_001294345         NINJ2
3  chr12     703804         808090     NR_122124  LOC100049716,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145280624      145433935  NM_001277444         NBPF9
1    chr1  145280624      145433935  NM_001278267        NBPF20
2    chr1  145280624      145433935  NM_001302371        NBPF10
3    chr1  145280624      145433935     NM_145277          HFE2
4    chr1  145280624      145433935     NM_203458      NOTCH2NL
5    chr1  145280624      145433935     NR_104217       NBPF25P
6    chr1  145280624      145433935     NR_125967  LOC101928979
7    chr2  110178794      110322182  NM_001099289        SH3RF3
8    chr2  110178794      110322182  NM_001321504        SEPT10
10  chr22   19912539       20082577     NM_000754          COMT
13  chr22   19912539       20082577  NM_001190326         DGCR8
14  chr22   19912539       20082577  NM_001282512        TXNRD2
15  chr22   19912539       20082577  NM_001283116        TANGO2
18  chr22   19912539       20082577     NM_001670         ARVCF
21  chr22   19912539       20082577     NR_029706        MIR185
22  chr22   19912539       20082577     NR_031706       MIR1306
23  chr22   19912539       20082577     NR_037412       MIR3618
24  chr22   19912539       20082577     NR_039918       MIR4761
25  chr22   19886354       20007287     NM_000754          COMT
28  chr22   19886354       20007287  NM_001282512        TXNRD2
29  chr22   19886354       20007287  NM_001322174        TANGO2
30  chr22   19886354       20007287     NM_001670         ARVCF
33  chr22   19886354       20007287     NR_039918       MIR4761
34   chr7   80214890       80476993     NM_000072          CD36
42   chr7   80214890       80476993     NM_006379        SEMA3C,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr3   41362770       41474282  NM_001322500         ULK4
2   chr4   69045738       69181047  NM_001031732       YTHDC1
3   chr4   69045738       69181047     NM_182502    TMPRSS11B
4   chr4   69045738       69181047     NR_015446       FTLP10
5   chr4   69045738       69181047     NR_104048  TMPRSS11BNL
6   chr5     107055         252576  NM_001080478      LRRC14B
7   chr5     107055         252576     NM_004168         SDHA
8   chr5     107055         252576     NM_052909     PLEKHG4B
9   chr5     107055         252576     NM_145265      CCDC127
10  chr7   80211923       80478352     NM_000072         CD36
18  chr7   80211923       80478352     NM_006379       SEMA3C,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  108437984      108541648     NM_006113       VAV3
1    chr1  108437984      108541648     NR_046653   VAV3-AS1
2    chr1  108437984      108541648     NR_107006    MIR7852
3   chr16   83026052       83289741  NM_001220488      CDH13
5    chr2   35656875       35787843     NR_039629   MIR548AD
6    chr9   26294947       27472368     NM_000459        TEK
7    chr9   26294947       27472368  NM_001031689       PLAA
8    chr9   26294947       27472368  NM_001099222      IFT74
11   chr9   26294947       27472368  NM_001161585       EQTN
12   chr9   26294947       27472368  NM_001167575      CAAP1
14   chr9   26294947       27472368     NM_022901     LRRC19
15   chr9   26294947       27472368     NM_024761      MOB3B
17   chr9   26294947       27472368     NR_026679  LINC00032
18   chr9   26294947       27472368     NR_121605  IFT74-AS1, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr2   97289509       97396864  NM_001115016    KANSL3
1   chr2   97289509       97396864  NM_001293083    FER1L5
2   chr2   97289509       97396864  NM_001322354    LMAN2L
5   chr4  167618692      167791306  NM_001204353    SPOCK3
8   chr7    8715378        8846083     NM_152745     NXPH1
9   chr7   29482229       29582251  NM_001293069      CHN2
14  chr7  110527141      110640064  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   82853314       83005377  NM_001164465     GOLGA6L10
1   chr15   82853314       83005377  NM_001291420      GOLGA6L9
3   chr15   82853314       83005377     NR_026811     GOLGA2P10
4   chr15   82853314       83005377     NR_045529     ADAMTS7P1
5   chr15   82853314       83005377     NR_102747     LOC727751
6   chr15   82853314       83005377     NR_111962    GOLGA6L17P
7   chr15   82853314       83005377     NR_120378  LOC102724034
8   chr16   68601028       68970287  NM_001305204         ZFP90
10  chr16   68601028       68970287  NM_001317184          CDH1
11  chr16   68601028       68970287  NM_001317195          CDH3
12  chr16   68601028       68970287     NM_024562        TANGO6
13  chr16   68601028       68970287     NR_106988     MIR7641-2
14   chr7  110616240      110750767  NM_001099658         LRRN3
15   chr7  110616240      110750767  NM_001244606        IMMP2L
17   chr9   39021256       39488747  NM_001085452     SPATA31A1
18   chr9   39021256       39488747     NM_033655       CNTNAP3
19   chr9   39021256       39488747     NR_003528       ZNF658B
20   chr9   39021256       39488747     NR_026803       FAM74A1,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr9   38970580       39078429  NM_033655   CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   78383777       78537488  NM_001101404     SH2D7
1  chr15   78383777       78537488  NM_001199377    ACSBG1
2  chr15   78383777       78537488  NM_001301224      CIB2
3  chr15   78383777       78537488     NM_005530     IDH3A
4   chr7  110643425      110747277  NM_001099658     LRRN3
5   chr7  110643425      110747277  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   83959583       84207246  NM_001142699         DLG2
4   chr17   14076234       14280266  NM_001007530       CDRT15
5   chr17   14076234       14280266     NM_001303        COX10
6   chr17   14076234       14280266     NM_006041     HS3ST3B1
7   chr17   14076234       14280266     NR_026880     MGC12916
8   chr20   14462505       14578084     NM_080676      MACROD2
9   chr20   14462505       14578084     NR_104193  MACROD2-IT1
10   chr7  143743501      143884886  NM_001001659       OR2A14
11   chr7  143743501      143884886  NM_001003702     ARHGEF35
12   chr7  143743501      143884886  NM_001004135       OR2A12
13   chr7  143743501      143884886  NM_001004488       OR2A25
14   chr7  143743501      143884886  NM_001005480        OR2A2
15   chr7  143743501      143884886     NM_012365        OR2A5
16   chr7  143743501      143884886     NM_198495       CTAGE4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145113979      145391702  NM_001277444         NBPF9
1    chr1  145113979      145391702  NM_001278267        NBPF20
2    chr1  145113979      145391702  NM_001302371        NBPF10
3    chr1  145113979      145391702     NM_004892        SEC22B
4    chr1  145113979      145391702     NM_203458      NOTCH2NL
5    chr1  145113979      145391702     NR_104217       NBPF25P
6    chr1  145113979      145391702     NR_125967  LOC101928979
7   chr15   28791775       28957643  NM_001282468       GOLGA8M
8   chr15   28791775       28957643     NR_036443       HERC2P9
9   chr18   36463243       37133732     NR_024391      MIR924HG
10   chr4   30658139       30784376  NM_001173523         PCDH7
13   chr4  169236706      170696157  NM_001012967        DDX60L
14   chr4  169236706      170696157  NM_001166108         PALLD
17   chr4  169236706      170696157  NM_001243372         CLCN3
20   chr4  169236706      170696157     NM_012224          NEK1
21   chr4  169236706      170696157     NM_017631         DDX60
22   chr4  169236706      170696157     NM_017867          HPF1
23   chr4  169236706      170696157     NM_020870        SH3RF1
24   chr4  169236706      170696157     NM_032783          CBR4
25   chr7   64173489       67607656     NM_000048           ASL
26   chr7   64173489       67607656     NM_000181          GUSB
27   chr7   64173489       67607656  NM_001007253        ERV3-1
29   chr7   64173489       67607656  NM_001160183        ZNF138
30   chr7   64173489       67607656  NM_001167961         KCTD7
31   chr7   64173489       67607656  NM_001287060       RABGEF1
34   chr7   64173489       67607656  NM_001287532         ZNF92
36   chr7   64173489       67607656     NM_003596         TPST1
37   chr7   64173489       67607656     NM_015852        ZNF117
38   chr7   64173489       67607656     NM_016038          SBDS
39   chr7   64173489       67607656     NM_017994       TMEM248
40   chr7   64173489       67607656     NM_018264          TYW1
41   chr7   64173489       67607656     NM_021148        ZNF273
42   chr7   64173489       67607656     NM_173517      VKORC1L1
43   chr7   64173489       67607656     NR_002961       SNORA22
44   chr7   64173489       67607656     NR_003110        CCT6P1
45   chr7   64173489       67607656     NR_003934    GTF2IRD1P1
46   chr7   64173489       67607656     NR_022007        PMS2P4
47   chr7   64173489       67607656     NR_024548          CRCP
48   chr7   64173489       67607656     NR_026873     LINC00174
49   chr7   64173489       67607656     NR_027392       INTS4P2
50   chr7   64173489       67607656     NR_033416        CCT6P3
51   chr7   64173489       67607656     NR_038378     LOC441242
52   chr7   64173489       67607656     NR_039793     MIR4650-1
53   chr7   64173489       67607656     NR_040585       STAG3L4
59   chr7   64173489       67607656     NR_108104     LINC01372
60   chr7   64173489       67607656     NR_110037  LOC100996437
61   chr7   64173489       67607656     NR_111972  GS1-124K5.11
63   chr7   64173489       67607656     NR_120514  LOC102723427
65   chr7   64173489       67607656     NR_134570   GS1-124K5.4
67   chr7   64173489       67607656     NR_135738      GTF2IP23
68   chr7   64173489       67607656     NR_136637     LOC644794
69   chr9    9524073        9654042     NM_002839         PTPRD
70   chr9  116795586      116907599  NM_001318041        ZNF618
71   chr9  116795586      116907599     NM_001633          AMBP
72   chr9  116795586      116907599     NM_138424         KIF12,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244966111      245067380  NM_001312871         COX20
2    chr1  244966111      245067380     NM_004501        HNRNPU
4    chr1  244966111      245067380     NR_132782      SNORA100
5   chr11   63484333       63619059  NM_001039469         MARK2
6   chr11   63484333       63619059  NM_001144936      C11orf95
7   chr11   63484333       63619059  NM_001265591          RTN3
8   chr11   63484333       63619059     NM_138471      C11orf84
9   chr15   28706870       28881895     NR_033351       GOLGA8F
10  chr15   28706870       28881895     NR_033353       GOLGA8G
11  chr15   28706870       28881895     NR_039734     MIR4509-3
12   chr6  162710791      163042125     NM_013988         PARK2
13   chr7  124895416      125005385     NR_110183  LOC101928254
14   chr7  124895416      125005385     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  132082446      132388594  NM_001261411        SFSWAP
1   chr12  132082446      132388594     NM_003565          ULK1
2   chr12  132082446      132388594     NM_016155         MMP17
3    chr2  130588726      130792017     NM_032144         RAB6C
4    chr2  130588726      130792017     NR_026740     LOC389033
5    chr2  130588726      130792017     NR_026758        FAR2P1
6    chr2  130588726      130792017     NR_036537     RAB6C-AS1
7    chr2  130588726      130792017     NR_110285  LOC101927924
8    chr3  160136385      160336907  NM_001288753          SMC4
9    chr3  160136385      160336907     NM_002268         KPNA4
11   chr3  160136385      160336907     NM_173084        TRIM59
12   chr3  160136385      160336907     NR_003001       SCARNA7
13   chr4  121657519      121807824     NM_018699         PRDM5,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr15   82858423       82984519  NM_001164465   GOLGA6L10
1   chr15   82858423       82984519  NM_001291420    GOLGA6L9
3   chr15   82858423       82984519     NR_026811   GOLGA2P10
4   chr15   82858423       82984519     NR_045529   ADAMTS7P1
5   chr15   82858423       82984519     NR_102747   LOC727751
6   chr15   82858423       82984519     NR_111962  GOLGA6L17P
7   chr18   24751017       24889945  NM_001256316       CHST9
8    chr4   93930808       94937005     NM_001510       GRID2
9    chr4   93930808       94937005     NM_005172       ATOH1
10   chr7    6661456        6789294  NM_001278559      ZNF316
11   chr7    6661456        6789294     NM_006956       ZNF12
12   chr7    6661456        6789294     NM_017560      ZNF853
13   chr7    6661456        6789294     NR_002217      PMS2CL
14   chr7  110400827      110514279  NM_001244606      IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   67194385       67310479  NM_001018070     CORO1B
1   chr11   67194385       67310479  NM_001078650    TMEM134
2   chr11   67194385       67310479  NM_001300895      CABP4
4   chr11   67194385       67310479  NM_001302959        AIP
5   chr11   67194385       67310479  NM_001318496      CABP2
6   chr11   67194385       67310479     NM_003952    RPS6KB2
8   chr11   67194385       67310479     NM_004910    PITPNM1
9   chr11   67194385       67310479     NM_005608    PTPRCAP
10  chr11   67194385       67310479     NM_005851    CDK2AP2
13  chr11   67194385       67310479     NM_206997     GPR152
15  chr11   67194385       67310479     NR_106810    MIR6752
16  chr12   72558099       73521289     NM_013381      TRHDE
17  chr12   72558099       73521289     NR_026836  TRHDE-AS1
19  chr13   63329547       64313934     NR_002171   OR7E156P
20  chr13   63329547       64313934     NR_047011  LINC00395
21  chr13   63329547       64313934     NR_047029  LINC00448
24  chr13   63329547       64313934     NR_126409  LINC00376
25  chr15   28564620       28695546     NM_004667      HERC2
26  chr15   28564620       28695546     NR_033351    GOLGA8F
27  chr15   28564620       28695546     NR_033353    GOLGA8G
28  chr15   28564620       28695546     NR_039734  MIR4509-3
29  chr16   68592885       68764384  NM_001305204      ZFP90
31  chr16   68592885       68764384  NM_001317195       CDH3
32   chr4  169239664      169444617  NM_001012967     DDX60L
33   chr4  169239664      169444617  NM_001166108      PALLD
35   chr4  169239664      169444617     NM_017631      DDX60
36   chr9   28668501       28820028  NM_001258282     LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   27024192       27447201     NM_002515         NOVA1
2   chr14   27024192       27447201     NR_036193       MIR4307
3   chr14   27024192       27447201     NR_110033  LOC101927062
4   chr14   27024192       27447201     NR_110041     MIR4307HG
5   chr14   27024192       27447201     NR_110556  LOC102724890
6   chr15   42623069       42747709  NM_001284306        ZNF106
8   chr15   42623069       42747709     NM_173087         CAPN3
11  chr15   42623069       42747709     NM_198141          GANC
12   chr6    5151972        5273218  NM_001164840         LYRM4
14   chr6    5151972        5273218  NM_001318872         FARS2
17   chr6    5151972        5273218     NR_126015     LYRM4-AS1
19   chr7   64027984       64318018  NM_001160183        ZNF138
20   chr7   64027984       64318018  NM_001282360        ZNF107
21   chr7   64027984       64318018     NR_033245     LOC641746
23   chr7   64027984       64318018     NR_077227  LOC100128885
25   chr7   64027984       64318018     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   47881527       47988284  NM_001113498      MDGA2
1    chr2   34145694       34286647     NR_126403  LINC01317
2   chr20    8069638        8471001     NM_015192      PLCB1
3   chr20    8069638        8471001     NR_046809  PLCB1-IT1
4    chr5  154179289      154571595  NM_001014990     MRPL22
5    chr5  154179289      154571595  NM_001099293      KIF4B
6    chr5  154179289      154571595  NM_001301074      CNOT8
9    chr5  154179289      154571595     NM_015315      LARP1
10   chr5  154179289      154571595     NM_015465     GEMIN5
11   chr5  154179289      154571595     NM_032385     FAXDC2
12   chr5  154179289      154571595     NR_039667    MIR378H
13   chr6  162796360      163396563  NM_001080378      PACRG
15   chr6  162796360      163396563     NM_013988      PARK2
16   chr7  110483974      110632575  NM_001244606     IMMP2L
18   chr8   86618825       87309438     NM_033126      PSKH2
19   chr8   86618825       87309438     NM_138817    SLC7A13
20   chr8   86618825       87309438     NM_152565   ATP6V0D2
21   chr8   86618825       87309438     NR_003594   REXO1L2P
29   chr9    9878192       10117412     NM_002839      PTPRD,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  102407228      102838183     NR_110211     OLFM3
1   chr10   27632123       28058734  NM_001034842    PTCHD3
2   chr10   27632123       28058734  NM_001242702       MKX
3   chr10   27632123       28058734  NM_001256411     RAB18
4   chr10   27632123       28058734     NR_121652   MKX-AS1
5    chr7   18615592       18726733  NM_001204144     HDAC9
13   chr7   21342862       21953973  NM_001277115    DNAH11
14   chr7   21342862       21953973  NM_001326542       SP4
15   chr7   21342862       21953973     NM_018719    CDCA7L
16   chr7   21342862       21953973     NR_031594   MIR1183
18   chr7  153800022      153938920  NM_001039350      DPP6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102378419      102527166     NR_110211         OLFM3
1    chr1  142701349      143144212     NR_046228   ANKRD20A12P
2    chr1  142701349      143144212     NR_110761  LOC102723769
3   chr10   68094729       68207466  NM_001127384        CTNNA3
5   chr20   14420244       14534346     NM_080676       MACROD2
6    chr4   68935383       69318779  NM_001031732        YTHDC1
7    chr4   68935383       69318779     NM_014058     TMPRSS11E
8    chr4   68935383       69318779     NM_182502     TMPRSS11B
9    chr4   68935383       69318779     NM_207407     TMPRSS11F
10   chr4   68935383       69318779     NR_015446        FTLP10
11   chr4   68935383       69318779     NR_046116     LOC550113
12   chr4   68935383       69318779     NR_104048   TMPRSS11BNL
13   chr4   69269902       69642476     NM_001076       UGT2B15
14   chr4   69269902       69642476     NM_001077       UGT2B17
15   chr4   69269902       69642476     NM_014058     TMPRSS11E
16   chr5  120479548      120916045     NR_104999  LOC102467226
17   chr7   24255069       24360688     NM_000905           NPY,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10    6717214        6846873     NR_038291     LINC00707
1  chr10    6717214        6846873     NR_108074     LINC00706
2  chr10    6717214        6846873     NR_138480         LINP1
3   chr2   51214740       51365095  NM_001330079         NRXN1
6   chr2   51214740       51365095     NR_135237     LOC730100
7   chr2  195570837      195744521     NR_110223  LOC101927431
8   chr8   87956224       88101546     NM_173538         CNBD1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   79760392       79950244     NR_104660  LINC01229
2   chr16   79760392       79950244     NR_104663     MAFTRR
3    chr3   60467910       60574667  NM_001320899       FHIT
4    chr7  102203374      102935031  NM_001031618     SPDYE2
5    chr7  102203374      102935031  NM_001031692     LRRC17
6    chr7  102203374      102935031  NM_001097615    POLR2J3
7    chr7  102203374      102935031  NM_001114403     UPK3BL
8    chr7  102203374      102935031  NM_001122838    NAPEPLD
9    chr7  102203374      102935031  NM_001161009     ARMC10
10   chr7  102203374      102935031  NM_001277335     RASA4B
11   chr7  102203374      102935031  NM_001287150     FBXL13
12   chr7  102203374      102935031     NM_006989      RASA4
13   chr7  102203374      102935031     NM_032959    POLR2J2
15   chr7  102203374      102935031     NR_003561  DPY19L2P2
16   chr7  102203374      102935031     NR_026660   RPL19P12
17   chr7  102203374      102935031     NR_026879    FAM185A,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48431822       48576529  NM_001005512    OR4A47
1   chr2  110223948      110359187  NM_001099289    SH3RF3
2   chr2  110223948      110359187  NM_001321504    SEPT10
4   chr2  167182832      167300848     NM_002976     SCN7A
5   chr2  167182832      167300848     NM_002977     SCN9A
6  chr20    5204994        5320833     NM_144773    PROKR2
7   chr4  169248971      169364810  NM_001012967    DDX60L
9   chr5   82386366       82651121  NM_001318012     XRCC4,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   68588032       69055523  NM_001305204      ZFP90
2  chr16   68588032       69055523  NM_001317184       CDH1
3  chr16   68588032       69055523  NM_001317195       CDH3
4  chr16   68588032       69055523     NM_024562     TANGO6
5  chr16   68588032       69055523     NR_106988  MIR7641-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   38004817       38293726  NM_001195296        MIPOL1
1   chr14   38004817       38293726  NM_001310135          TTC6
2   chr14   38004817       38293726     NM_004496         FOXA1
3   chr15   30286152       30920306  NM_001039841     ARHGAP11B
4   chr15   30286152       30920306  NM_001282472       GOLGA8J
5   chr15   30286152       30920306  NM_001282484       GOLGA8R
6   chr15   30286152       30920306  NM_001282490       GOLGA8H
7   chr15   30286152       30920306     NM_139320      CHRFAM7A
8   chr15   30286152       30920306     NR_026771  DKFZP434L187
9   chr15   30286152       30920306     NR_026858        ULK4P1
10  chr15   30286152       30920306     NR_026859        ULK4P3
11  chr15   30286152       30920306     NR_033933       GOLGA8T
12  chr16   21555967       22167078  NM_001077180        METTL9
13  chr16   21555967       22167078  NM_001161683          OTOA
14  chr16   21555967       22167078  NM_001164579      C16orf52
16  chr16   21555967       22167078  NM_001310148        NPIPB4
17  chr16   21555967       22167078     NM_003366        UQCRC2
18  chr16   21555967       22167078     NM_005849         IGSF6
21  chr16   21555967       22167078     NM_173615         VWA3A
22  chr16   21555967       22167078     NM_173806         PDZD9
23  chr16   21555967       22167078     NR_003370        RRN3P1
24  chr16   21555967       22167078     NR_110930  LOC101927814
25   chr2   50918680       51115988  NM_001330082         NRXN1
26   chr2   50918680       51115988     NR_130470       MIR8485,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56444669       56912304  NM_001142770        PCDH15
3    chr2   52161114       53412946     NR_039630       MIR4431
4    chr2   52161114       53412946     NR_135237     LOC730100
5    chr2   52161114       53412946     NR_135239  LOC105374596
6   chr20   14865338       15223601  NM_001033087       MACROD2
8   chr20   14865338       15223601     NR_037841   MACROD2-AS1
10   chr4    8999172       10392481     NM_000798          DRD5
11   chr4    8999172       10392481  NM_001001290        SLC2A9
12   chr4    8999172       10392481  NM_001040448       DEFB131
13   chr4    8999172       10392481  NM_001242326      USP17L25
21   chr4    8999172       10392481  NM_001256852      USP17L10
22   chr4    8999172       10392481  NM_001256853      USP17L12
24   chr4    8999172       10392481  NM_001256854      USP17L11
27   chr4    8999172       10392481  NM_001256855      USP17L13
28   chr4    8999172       10392481  NM_001256857      USP17L17
29   chr4    8999172       10392481  NM_001256860      USP17L19
30   chr4    8999172       10392481  NM_001256861      USP17L20
31   chr4    8999172       10392481  NM_001256894      USP17L15
32   chr4    8999172       10392481     NM_005112          WDR1
34   chr4    8999172       10392481     NR_027279      USP17L6P
35   chr4    8999172       10392481     NR_031688      MIR548I2
36   chr4    8999172       10392481     NR_036090       MIR3138
37   chr4    8999172       10392481     NR_046416      USP17L9P
38   chr7  111293903      111463973     NM_014705         DOCK4
39   chr7  111293903      111463973     NR_103806     DOCK4-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr7  146507062      146846546     NM_014141       CNTNAP2
1   chr7  146507062      146846546     NR_110829  LOC101928700
2   chr8    6725016        7488606  NM_001040705      DEFB107B
3   chr8    6725016        7488606  NM_001081551      DEFB103A
4   chr8    6725016        7488606  NM_001164457       ZNF705G
5   chr8    6725016        7488606  NM_001205266        DEFB4B
6   chr8    6725016        7488606  NM_001256873       USP17L1
7   chr8    6725016        7488606  NM_001256874       USP17L4
8   chr8    6725016        7488606  NM_001282478       PRR23D2
9   chr8    6725016        7488606  NM_001282479       PRR23D1
10  chr8    6725016        7488606  NM_001302265        DEFA1B
11  chr8    6725016        7488606     NM_001925         DEFA4
12  chr8    6725016        7488606     NM_001926         DEFA6
13  chr8    6725016        7488606     NM_004084         DEFA1
15  chr8    6725016        7488606     NM_005217         DEFA3
16  chr8    6725016        7488606     NM_005218         DEFB1
17  chr8    6725016        7488606     NM_021010         DEFA5
18  chr8    6725016        7488606     NM_058200       SPAG11B
22  chr8    6725016        7488606     NM_080389      DEFB104A
23  chr8    6725016        7488606     NM_152250      DEFB105A
24  chr8    6725016        7488606     NM_152251      DEFB106A
25  chr8    6725016        7488606     NR_003668    DEFB109P1B
26  chr8    6725016        7488606     NR_027000     LINC00965
29  chr8    6725016        7488606     NR_027423        FAM66B
30  chr8    6725016        7488606     NR_029386       DEFA10P
31  chr8    6725016        7488606     NR_036686        DEFT1P
33  chr8    6725016        7488606     NR_046343      FAM90A7P
35  chr8    6725016        7488606     NR_073407        DEFA8P
36  chr8    6725016        7488606     NR_073408        DEFA9P
37  chr8    6725016        7488606     NR_073421       DEFA11P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  186025169      186183204     NM_031935         HMCN1
1   chr22   17159854       17272266     NM_175878          XKR3
2   chr22   17159854       17272266     NR_134584  LOC101929350
3    chr3  101120348      101238464  NM_001282803         SENP7
5    chr3  101120348      101238464     NR_036433      FAM172BP
6    chr6  155423535      155590644  NM_001001346        CLDN20
7    chr6  155423535      155590644  NM_001010927         TIAM2
9    chr6  155423535      155590644     NM_016020         TFB1M
10   chr9   41877170       43415531  NM_001012419     ANKRD20A3
12   chr9   41877170       43415531  NM_001012421     ANKRD20A2
14   chr9   41877170       43415531     NM_199244       FOXD4L4
15   chr9   41877170       43415531     NR_003670        FGF7P3
16   chr9   41877170       43415531     NR_015363         GLIDR
17   chr9   41877170       43415531     NR_026558        AQP7P3
18   chr9   41877170       43415531     NR_027472     LOC642929
19   chr9   41877170       43415531     NR_046175     LOC286297
20   chr9   41877170       43415531     NR_121570  LOC101928381
21   chr9   41877170       43415531     NR_121572      GXYLT1P3
25   chr9   41877170       43415531     NR_126048  LOC102724238
26   chr9   41877170       43415531     NR_126049     LOC554249
27   chr9   41877170       43415531     NR_135597  LOC101928195
28   chr9   41877170       43415531     NR_136299  LOC101929583
29   chr9   41877170       43415531     NR_136310  LOC105379252,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  244995295      245113368  NM_001312871         COX20
2   chr1  244995295      245113368     NM_004501        HNRNPU
4   chr1  244995295      245113368     NR_132782      SNORA100
5   chr5  175367674      175628919  NM_001265615       FAM153B
6   chr5  175367674      175628919     NM_032361         THOC3
7   chr5  175367674      175628919     NR_036494     LOC643201
8   chr5  175367674      175628919     NR_038402  LOC100507387
9   chr5  175367674      175628919     NR_103794  LOC100996385
10  chr7   64100144       64218217  NM_001282360        ZNF107
12  chr7   64100144       64218217     NR_106898       MIR6839
13  chr9     191975         303654  NM_001190458         DOCK8
14  chr9     191975         303654     NM_152569       C9orf66,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   71078580       71255954  NM_001198542      HYDIN
3   chr4  133478814      133599208     NR_126401  LINC01256,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr21   13426907       15954576  NM_001256370        SAMSN1
2   chr21   13426907       15954576  NM_001302998          LIPI
3   chr21   13426907       15954576  NM_001320602         RBM11
4   chr21   13426907       15954576     NM_006948        HSPA13
5   chr21   13426907       15954576     NM_174981         POTED
7   chr21   13426907       15954576     NR_003087        ABCC13
9   chr21   13426907       15954576     NR_026755      CYP4F29P
10  chr21   13426907       15954576     NR_026916    ANKRD30BP2
11  chr21   13426907       15954576     NR_027270   ANKRD20A11P
12  chr21   13426907       15954576     NR_036061     MIR3118-1
13  chr21   13426907       15954576     NR_036164     MIR3156-3
14  chr21   13426907       15954576     NR_046512    SAMSN1-AS1
15  chr21   13426907       15954576     NR_110544  LOC102724188
16  chr21   13426907       15954576     NR_128718     MIR8069-2
17   chr7    8694398        8975386     NM_152745         NXPH1
18   chr7  110684460      110946213  NM_001099658         LRRN3
19   chr7  110684460      110946213  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21601903       21783098  NM_001004731     OR5AU1
1   chr14   21601903       21783098     NM_020366    RPGRIP1
2   chr14   21601903       21783098     NM_031314     HNRNPC
3   chr14   21601903       21783098     NR_038970  LINC00641
5    chr7   80125430       80234086  NM_001001547       CD36
6    chr7   80125430       80234086  NM_001102386      GNAT3
8    chr8   58088208       58243910     NR_026772  LINC00588
9    chr8   58088208       58243910     NR_038235  LINC01606
10   chr8   58088208       58243910     NR_038874  LOC286177,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   19605099       19783054  NM_001142308    MALRD1
1  chr10   67565569       67974434  NM_001127384    CTNNA3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81513969       82032379     NM_000429         MAT1A
1   chr10   81513969       82032379  NM_001012973         PLAC9
2   chr10   81513969       82032379  NM_001270367       TMEM254
5   chr10   81513969       82032379  NM_001278407        ANXA11
8   chr10   81513969       82032379     NM_003019         SFTPD
10  chr10   81513969       82032379     NR_002724         MBL1P
11  chr10   81513969       82032379     NR_027431   TMEM254-AS1
12  chr10   81513969       82032379     NR_029407     LOC642361
13  chr10   81513969       82032379     NR_033857       BMS1P21
14  chr10   81513969       82032379     NR_038464     LINC00857
15  chr10   81513969       82032379     NR_120611    NUTM2B-AS1
18  chr10   81513969       82032379     NR_136612  LOC100130698
20  chr11   89071079       89399886  NM_001143837          NOX4
25  chr11   89071079       89399886     NM_153696        FOLH1B
27  chr13   80842205       80979888  NM_001318536         SPRY2
30  chr14   42069396       42333666  NM_001346175         LRFN5
31  chr16    6703423        6923368  NM_001142334        RBFOX1
34   chr5   59629692       59802575  NM_001165899         PDE4D
35   chr5   59629692       59802575     NR_024617         PART1
38   chr7   64098222       64764663  NM_001007253        ERV3-1
39   chr7   64098222       64764663  NM_001160183        ZNF138
40   chr7   64098222       64764663  NM_001282360        ZNF107
41   chr7   64098222       64764663     NM_015852        ZNF117
42   chr7   64098222       64764663     NM_021148        ZNF273
43   chr7   64098222       64764663     NR_033416        CCT6P3
46   chr7   64098222       64764663     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11    4282595        5575248     NM_000184      HBG2
1   chr11    4282595        5575248     NM_000518       HBB
2   chr11    4282595        5575248     NM_000519       HBD
3   chr11    4282595        5575248     NM_000559      HBG1
4   chr11    4282595        5575248  NM_001001916    OR52J3
5   chr11    4282595        5575248  NM_001004137    OR52M1
6   chr11    4282595        5575248  NM_001004748    OR51A2
7   chr11    4282595        5575248  NM_001004749    OR51A7
8   chr11    4282595        5575248  NM_001004750    OR51B6
9   chr11    4282595        5575248  NM_001004751    OR51D1
10  chr11    4282595        5575248  NM_001004752    OR51F1
11  chr11    4282595        5575248  NM_001004753    OR51F2
12  chr11    4282595        5575248  NM_001004754    OR51I2
13  chr11    4282595        5575248  NM_001004755    OR51L1
14  chr11    4282595        5575248  NM_001004756    OR51M1
15  chr11    4282595        5575248  NM_001004757    OR51Q1
16  chr11    4282595        5575248  NM_001004758    OR51S1
17  chr11    4282595        5575248  NM_001004759    OR51T1
18  chr11    4282595        5575248  NM_001004760    OR51V1
19  chr11    4282595        5575248  NM_001005160    OR52A5
20  chr11    4282595        5575248  NM_001005161    OR52B4
21  chr11    4282595        5575248  NM_001005163    OR52D1
22  chr11    4282595        5575248  NM_001005164    OR52E2
23  chr11    4282595        5575248  NM_001005169    OR52I1
24  chr11    4282595        5575248  NM_001005170    OR52I2
25  chr11    4282595        5575248  NM_001005171    OR52K1
26  chr11    4282595        5575248  NM_001005172    OR52K2
27  chr11    4282595        5575248  NM_001005177    OR52R1
28  chr11    4282595        5575248  NM_001005237    OR51G1
29  chr11    4282595        5575248  NM_001005238    OR51G2
30  chr11    4282595        5575248  NM_001005288    OR51I1
31  chr11    4282595        5575248  NM_001005289    OR52H1
32  chr11    4282595        5575248  NM_001005329    OR51A4
33  chr11    4282595        5575248  NM_001005567    OR51B5
34  chr11    4282595        5575248     NM_003141    TRIM21
35  chr11    4282595        5575248     NM_005330      HBE1
36  chr11    4282595        5575248     NM_012375    OR52A1
37  chr11    4282595        5575248     NM_017481    UBQLN3
38  chr11    4282595        5575248     NM_018073    TRIM68
39  chr11    4282595        5575248     NM_021801     MMP26
40  chr11    4282595        5575248     NM_030774    OR51E2
41  chr11    4282595        5575248     NM_033179    OR51B4
42  chr11    4282595        5575248     NM_033180    OR51B2
43  chr11    4282595        5575248     NM_144663  C11orf40
44  chr11    4282595        5575248     NM_145053    UBQLNL
45  chr11    4282595        5575248     NM_152430    OR51E1
46  chr11    4282595        5575248     NR_001589     HBBP1
48  chr11    4282595        5575248     NR_121648     BGLT3
49  chr11    4282595        5575248     NR_133006    OLFM5P
50   chr5   59661936       60074534  NM_001145208   DEPDC1B
51   chr5   59661936       60074534  NM_001165899     PDE4D
52   chr5   59661936       60074534     NM_024930    ELOVL7
53   chr5   59661936       60074534     NR_024617     PART1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12    5145144        5258434     NM_002234         KCNA5
1    chr6  162811810      163196646  NM_001080378         PACRG
3    chr6  162811810      163196646     NM_013988         PARK2
4    chr7   64033435       64496922  NM_001007253        ERV3-1
5    chr7   64033435       64496922  NM_001160183        ZNF138
6    chr7   64033435       64496922  NM_001282360        ZNF107
7    chr7   64033435       64496922     NM_015852        ZNF117
8    chr7   64033435       64496922     NM_021148        ZNF273
9    chr7   64033435       64496922     NR_033245     LOC641746
11   chr7   64033435       64496922     NR_077227  LOC100128885
13   chr7   64033435       64496922     NR_106898       MIR6839
14   chr9   41924462       42050026     NR_003670        FGF7P3
15   chr9   41924462       42050026     NR_015363         GLIDR
18   chr9   41924462       42050026     NR_126048  LOC102724238
19   chr9   41924462       42050026     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  162795832      162922286     NM_178550    CCDC190
1  chr15   20966297       21088792  NM_001277303     POTEB2
2  chr15   20966297       21088792     NM_207355     POTEB3
3  chr15   20966297       21088792     NR_036062  MIR3118-2
5   chr6  162830186      162930851     NM_013988      PARK2,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   64155850       64308686  NM_001160183    ZNF138
1  chr7   64155850       64308686  NM_001282360    ZNF107,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244995609      245138333  NM_001143943        EFCAB2
2    chr1  244995609      245138333  NM_001312871         COX20
4    chr1  244995609      245138333     NM_004501        HNRNPU
7    chr1  244995609      245138333     NR_111907  LOC101928068
8    chr1  244995609      245138333     NR_132782      SNORA100
9   chr14   47787637       48109528  NM_001113498         MDGA2
12   chr4   71373598       71855768  NM_001037442         RUFY3
13   chr4   71373598       71855768  NM_001098477         GRSF1
15   chr4   71373598       71855768  NM_001244766         MOB1B
17   chr4   71373598       71855768  NM_001286731          AMTN
22   chr4   71373598       71855768     NM_016519          AMBN
23   chr4   71373598       71855768     NM_020368          UTP3
24   chr4   71373598       71855768     NM_031889          ENAM
25   chr4   71373598       71855768     NM_144646        JCHAIN
26   chr6  161786099      161928823     NM_013988         PARK2
27   chr6  161786099      161928823     NR_134594  LOC105378098
28   chr8     448274         680775  NM_001256113          TDRP
29   chr8     448274         680775  NM_001303100        ERICH1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   62509549       62654871  NM_001252079     USP15
2  chr12   62509549       62654871     NM_178539   FAM19A2
3  chr12   62509549       62654871     NR_106740   MIR6125
4   chr4  169257029      169363327  NM_001012967    DDX60L,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  110504560      110784865  NM_001099658     LRRN3
1  chr7  110504560      110784865  NM_001244606    IMMP2L
3  chr8   19787845       20022727     NM_000237       LPL
4  chr8   19787845       20022727  NM_001135691   SLC18A1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10  100700997      100816161  NM_001166244         HPSE2
1  chr11  122044940      122196719     NR_024430      MIR100HG
6  chr12   41689243       42301316  NM_001164595        PDZRN4
8  chr12   41689243       42301316     NR_135041  LOC101927038
9   chr7    3303469        3451716     NM_152744          SDK1,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   63177893       63289228  NR_047029  LINC00448
1  chr21   22507960       22723956  NM_004540      NCAM2
2   chr5   17621214       17883317  NR_134286  LOC646241,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2   78168550       78300916  NR_024342        SNAR-H
1  chr2   78168550       78300916  NR_110288  LOC101927967,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   59382649       59530896  NM_001005324    OR10V1
1  chr11   59382649       59530896  NM_001178040      STX3
2  chr11   59382649       59530896     NM_002556      OSBP
3  chr11   59382649       59530896     NM_152716     PATL1
4  chr11   59382649       59530896     NR_045005   OR10V2P
5   chr3    6999240        7115732     NM_181874      GRM7
6   chr8    8173486        8316895  NM_001080826     PRAG1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   41643731       41751628  NM_001164595    PDZRN4
1  chr12   85657560       85907171     NM_006982      ALX1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   31476906       31665703     NM_032849      MEDAG
1  chr13   31476906       31665703     NM_152325      TEX26
2  chr13   31476906       31665703     NR_038287  TEX26-AS1
4  chr14   47878997       48218481  NM_001113498      MDGA2
5  chr18   61809551       61918618     NR_027245  LINC00305
6  chr18   61809551       61918618     NR_033881  LOC284294
7  chr18   61809551       61918618     NR_033983  LINC01538,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr13   67259129       67407527     NM_020403         PCDH9
1    chr13   67259129       67407527     NR_046527     PCDH9-AS2
2    chr13   86008443       86116187     NR_046989     LINC00351
3    chr16   68604989       68751933  NM_001305204         ZFP90
4    chr16   68604989       68751933  NM_001317195          CDH3
5    chr19   34640530       37448956     NM_000704         ATP4A
6    chr19   34640530       37448956  NM_001007248        ZNF599
7    chr19   34640530       37448956  NM_001012320        ZNF302
8    chr19   34640530       37448956  NM_001012756        ZNF260
9    chr19   34640530       37448956  NM_001025591       SCGB2B2
10   chr19   34640530       37448956  NM_001029997        ZNF181
11   chr19   34640530       37448956  NM_001035516          DMKN
12   chr19   34640530       37448956     NM_001037         SCN1B
13   chr19   34640530       37448956  NM_001037232        ZNF829
14   chr19   34640530       37448956  NM_001039887       PROSER3
15   chr19   34640530       37448956  NM_001042474        ZNF565
16   chr19   34640530       37448956  NM_001042631        SDHAF1
17   chr19   34640530       37448956  NM_001080436          WTIP
18   chr19   34640530       37448956  NM_001083961         WDR62
19   chr19   34640530       37448956  NM_001099437         ZNF30
20   chr19   34640530       37448956  NM_001099638        ZNF146
24   chr19   34640530       37448956  NM_001136008         FXYD3
26   chr19   34640530       37448956  NM_001145343        ZNF566
27   chr19   34640530       37448956  NM_001145649        ZNF529
28   chr19   34640530       37448956  NM_001164605         FXYD5
29   chr19   34640530       37448956  NM_001166034          SBSN
31   chr19   34640530       37448956  NM_001172630      ARHGAP33
32   chr19   34640530       37448956  NM_001193552        ZNF850
33   chr19   34640530       37448956  NM_001199216           MAG
34   chr19   34640530       37448956  NM_001199570         CLIP3
..     ...        ...            ...           ...           ...
114  chr19   34640530       37448956     NM_139284          LGI4
115  chr19   34640530       37448956     NM_144617         HSPB6
117  chr19   34640530       37448956     NM_144987       U2AF1L4
119  chr19   34640530       37448956     NM_152481       FAM187B
120  chr19   34640530       37448956     NM_152658         THAP8
121  chr19   34640530       37448956     NM_175872        ZNF792
126  chr19   34640530       37448956     NM_207392        KRTDAP
127  chr19   34640530       37448956     NR_024561       HPN-AS1
130  chr19   34640530       37448956     NR_027620      SCGB1B2P
131  chr19   34640530       37448956     NR_029389  LOC100134317
132  chr19   34640530       37448956     NR_033748     LOC644189
133  chr19   34640530       37448956     NR_033982     LOC400685
134  chr19   34640530       37448956     NR_036504     LOC728752
135  chr19   34640530       37448956     NR_038278     LINC00665
138  chr19   34640530       37448956     NR_038396   TMEM147-AS1
139  chr19   34640530       37448956     NR_040027    ZNF790-AS1
141  chr19   34640530       37448956     NR_040046     LINC01531
142  chr19   34640530       37448956     NR_045208      SCGB2B3P
143  chr19   34640530       37448956     NR_046222     LINC00904
144  chr19   34640530       37448956     NR_046420     UPK1A-AS1
145  chr19   34640530       37448956     NR_049828       MIR5196
146  chr19   34640530       37448956     NR_104176     LINC01529
147  chr19   34640530       37448956     NR_106947       MIR6887
148  chr19   34640530       37448956     NR_110703    ZNF529-AS1
150  chr19   34640530       37448956     NR_110707     LINC01534
151  chr19   34640530       37448956     NR_110749     ZNF30-AS1
152  chr19   34640530       37448956     NR_110750  LOC102723617
153  chr19   34640530       37448956     NR_136525  LOC105372383
154   chr4   30665255       31405376  NM_001173523         PCDH7
157   chr4   30665255       31405376     NR_125935  LOC102723778

[113 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   42122962       42297686  NM_001346175      LRFN5
1  chr14   55659045       55800505     NM_017943     FBXO34
3  chr20   41081391       41289305     NM_133170      PTPRT
4   chr3     843424        1090087     NR_110118  LINC01266
5   chr7  152329490      152779760     NM_005431      XRCC2
6   chr7  152329490      152779760     NM_020445     ACTR3B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10    2017697        2195946     NR_040253  LINC00700
1   chr10    2017697        2195946     NR_106720    MIR6072
2   chr14   47777691       47890151  NM_001113498      MDGA2
5   chr20   40991075       41199999     NM_133170      PTPRT
6   chr21   17908673       18025380     NR_027790   MIR99AHG
8   chr21   17908673       18025380     NR_029480   MIRLET7C
9   chr21   17908673       18025380     NR_029514     MIR99A
10  chr21   17908673       18025380     NR_029694   MIR125B2
19   chr5   63784053       65006918  NM_001029875     RGS7BP
20   chr5   63784053       65006918  NM_001093755   TRAPPC13
21   chr5   63784053       65006918  NM_001164442    FAM159B
22   chr5   63784053       65006918  NM_001267038      CENPK
23   chr5   63784053       65006918  NM_001278926      PPWD1
24   chr5   63784053       65006918  NM_001297645      CWC27
28   chr5   63784053       65006918     NM_019072       SGTB
29   chr5   63784053       65006918     NM_033228     TRIM23
30   chr5   63784053       65006918     NM_173829   SREK1IP1
33   chr5   63784053       65006918     NR_135689    ADAMTS6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143534756      143682038     NR_106967       MIR6077
1   chr14   61731552       62119239  NM_001017970       TMEM30B
2   chr14   61731552       62119239     NM_006255         PRKCH
3   chr14   61731552       62119239     NR_039985      FLJ22447
4   chr14   61731552       62119239     NR_110416  LOC101927780
6   chr20   14803135       15251106  NM_001033087       MACROD2
8   chr20   14803135       15251106     NR_037841   MACROD2-AS1
10   chr5  120524894      120777127     NR_104999  LOC102467226
11   chr6  161921129      162192080     NM_013988         PARK2
12   chr7  110488991      110646602  NM_001244606        IMMP2L
14   chr7  110696972      110923786  NM_001099658         LRRN3
15   chr7  110696972      110923786  NM_001244606        IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr5   16949157       17458203  NM_001271606         BASP1
2  chr5   16949157       17458203     NR_027253     LOC285696
3  chr5   16949157       17458203     NR_033975     LOC401177
4  chr5   16949157       17458203     NR_134270  LOC102723526
6  chr5   16949157       17458203     NR_134273  LOC101929544,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56493930       57362787  NM_001142770        PCDH15
3   chr10   56493930       57362787  NM_001190478      MTRNR2L5
4   chr15   30298077       31051430  NM_001039841     ARHGAP11B
5   chr15   30298077       31051430  NM_001282472       GOLGA8J
6   chr15   30298077       31051430  NM_001282484       GOLGA8R
7   chr15   30298077       31051430  NM_001282490       GOLGA8H
8   chr15   30298077       31051430     NM_139320      CHRFAM7A
9   chr15   30298077       31051430     NR_026771  DKFZP434L187
10  chr15   30298077       31051430     NR_026858        ULK4P1
11  chr15   30298077       31051430     NR_026859        ULK4P3
12  chr15   30298077       31051430     NR_033933       GOLGA8T
13  chr15   30298077       31051430     NR_038253  LOC100288637
15  chr18   40204986       40340750     NM_002930          RIT2
16  chr18   40204986       40340750     NR_046174     LINC00907
17   chr2  167123450      167293520     NM_002976         SCN7A
18   chr2  167123450      167293520     NM_002977         SCN9A
19   chr2  167123450      167293520     NR_110260  LOC101929680
20   chr9  137539582      137679622     NM_000093        COL5A1
21   chr9  137539582      137679622     NR_138049    COL5A1-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67624642       68349973  NM_001127384    CTNNA3
2   chr4    8996080        9235621  NM_001256852  USP17L10
3   chr4    8996080        9235621  NM_001256853  USP17L12
4   chr4    8996080        9235621  NM_001256854  USP17L11
5   chr4    8996080        9235621  NM_001256855  USP17L13
6   chr7  110657956      110846753  NM_001099658     LRRN3
7   chr7  110657956      110846753  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   12730861       12860905  NM_001080830  PRAMEF12
1   chr1   12730861       12860905  NM_001103170   AADACL3
2   chr1   12730861       12860905  NM_001294139   PRAMEF1
4   chr1   12730861       12860905     NM_152290  C1orf158
5  chr21   22356003       22485186     NM_004540     NCAM2
6   chr9  116781797      116912607  NM_001318041    ZNF618
7   chr9  116781797      116912607     NM_001633      AMBP
8   chr9  116781797      116912607     NM_138424     KIF12,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11  108502067      108614681     NM_004398     DDX10
1  chr22   17263845       17581685  NM_001037814      GAB4
2  chr22   17263845       17581685  NM_001289905    IL17RA
3  chr22   17263845       17581685     NM_175878      XKR3
4  chr22   17263845       17581685     NR_003607   HSFY1P1
5  chr22   17263845       17581685     NR_015352     CECR7,    chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr2  133104340      133253120     NM_001508           GPR39
1   chr2  133104340      133253120     NR_135203         FAM201B
2  chr21   44770049       44873716  NM_001320643    LOC102724428
3  chr21   44770049       44873716     NM_173354            SIK1
4  chr21   44770049       44873716     NR_026960       LINC00319
5  chr21   44770049       44873716     NR_131902  TCONS_00029157,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143678820      143795413  NM_001123068       PPIAL4G
1  chr1  143678820      143795413     NR_104014     LINC01138
2  chr1  143678820      143795413     NR_111930  LOC100132057
3  chr6  116569339      116744364  NM_001322939           DSE
6  chr6  116569339      116744364     NM_003309        TSPYL1
7  chr6  116569339      116744364     NM_021648        TSPYL4,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr10   56474662       56806685  NM_001142770        PCDH15
3    chr13   63287708       63410637     NR_047029     LINC00448
6    chr14   45685381       45806472     NM_018353      MIS18BP1
7    chr19   34648753       37457179     NM_000704         ATP4A
8    chr19   34648753       37457179  NM_001007248        ZNF599
9    chr19   34648753       37457179  NM_001012320        ZNF302
10   chr19   34648753       37457179  NM_001012756        ZNF260
11   chr19   34648753       37457179  NM_001025591       SCGB2B2
12   chr19   34648753       37457179  NM_001029997        ZNF181
13   chr19   34648753       37457179  NM_001035516          DMKN
14   chr19   34648753       37457179     NM_001037         SCN1B
15   chr19   34648753       37457179  NM_001037232        ZNF829
16   chr19   34648753       37457179  NM_001039887       PROSER3
17   chr19   34648753       37457179  NM_001042474        ZNF565
18   chr19   34648753       37457179  NM_001042631        SDHAF1
19   chr19   34648753       37457179  NM_001080436          WTIP
20   chr19   34648753       37457179  NM_001083961         WDR62
21   chr19   34648753       37457179  NM_001099437         ZNF30
22   chr19   34648753       37457179  NM_001099638        ZNF146
26   chr19   34648753       37457179  NM_001136008         FXYD3
28   chr19   34648753       37457179  NM_001145343        ZNF566
29   chr19   34648753       37457179  NM_001145649        ZNF529
30   chr19   34648753       37457179  NM_001164605         FXYD5
31   chr19   34648753       37457179  NM_001166034          SBSN
33   chr19   34648753       37457179  NM_001172630      ARHGAP33
34   chr19   34648753       37457179  NM_001193552        ZNF850
35   chr19   34648753       37457179  NM_001199216           MAG
36   chr19   34648753       37457179  NM_001199570         CLIP3
37   chr19   34648753       37457179  NM_001204835        ZNF568
39   chr19   34648753       37457179  NM_001242472        ZNF345
..     ...        ...            ...           ...           ...
123  chr19   34648753       37457179     NM_175872        ZNF792
128  chr19   34648753       37457179     NM_207392        KRTDAP
129  chr19   34648753       37457179     NR_024561       HPN-AS1
132  chr19   34648753       37457179     NR_027620      SCGB1B2P
133  chr19   34648753       37457179     NR_029389  LOC100134317
134  chr19   34648753       37457179     NR_033748     LOC644189
135  chr19   34648753       37457179     NR_033982     LOC400685
136  chr19   34648753       37457179     NR_036504     LOC728752
137  chr19   34648753       37457179     NR_038278     LINC00665
140  chr19   34648753       37457179     NR_038396   TMEM147-AS1
141  chr19   34648753       37457179     NR_040027    ZNF790-AS1
143  chr19   34648753       37457179     NR_040046     LINC01531
144  chr19   34648753       37457179     NR_045208      SCGB2B3P
145  chr19   34648753       37457179     NR_046222     LINC00904
146  chr19   34648753       37457179     NR_046420     UPK1A-AS1
147  chr19   34648753       37457179     NR_049828       MIR5196
148  chr19   34648753       37457179     NR_104176     LINC01529
149  chr19   34648753       37457179     NR_106947       MIR6887
150  chr19   34648753       37457179     NR_110703    ZNF529-AS1
152  chr19   34648753       37457179     NR_110707     LINC01534
153  chr19   34648753       37457179     NR_110749     ZNF30-AS1
154  chr19   34648753       37457179     NR_110750  LOC102723617
155  chr19   34648753       37457179     NR_136525  LOC105372383
156   chr2   75893655       76074625  NM_001201334         GCFC2
159  chr22   17179722       17349792     NM_175878          XKR3
160  chr22   17179722       17349792     NR_003607       HSFY1P1
161  chr22   17179722       17349792     NR_134584  LOC101929350
162   chr5  150090059      150190357  NM_001135643         DCTN4
164   chr5  150090059      150190357     NM_032947         SMIM3
165   chr9  102084094      102330985     NR_102270          NAMA

[116 rows x 5 columns],   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   31364652       31554804  NM_001145122        CAPN14
2  chr2   31364652       31554804     NM_014600          EHD3
3  chr7  132786512      132964093  NM_001037126         EXOC4
5  chr7  132786512      132964093     NR_133931  LOC105375512, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   63330774       63430838  NR_047029  LINC00448
3  chr15   28241569       28624237  NM_000275       OCA2
5  chr15   28241569       28624237  NM_004667      HERC2
6  chr15   28241569       28624237  NR_033351    GOLGA8F
7  chr15   28241569       28624237  NR_033353    GOLGA8G,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12808422       12991480  NM_001009611       PRAMEF4
1    chr1   12808422       12991480  NM_001012276       PRAMEF8
2    chr1   12808422       12991480  NM_001013631      HNRNPCL1
3    chr1   12808422       12991480  NM_001080830      PRAMEF12
4    chr1   12808422       12991480  NM_001146181      HNRNPCL3
5    chr1   12808422       12991480  NM_001146344      PRAMEF11
6    chr1   12808422       12991480  NM_001294139       PRAMEF1
7    chr1   12808422       12991480  NM_001302551      HNRNPCL4
9    chr1   12808422       12991480     NM_023014       PRAMEF2
10   chr1   12808422       12991480     NM_152290      C1orf158
11  chr10   68358807       68502518  NM_001127384        CTNNA3
13  chr14   27038929       27443211     NM_002515         NOVA1
15  chr14   27038929       27443211     NR_036193       MIR4307
16  chr14   27038929       27443211     NR_110033  LOC101927062
17  chr14   27038929       27443211     NR_110041     MIR4307HG
18  chr14   27038929       27443211     NR_110556  LOC102724890
19  chr20   23376212       23484563  NM_001283018          NAPB
20  chr20   23376212       23484563     NM_005492          CST8
21  chr20   23376212       23484563     NM_080830         CST11
22  chr20   23376212       23484563     NM_138283         CSTL1
23   chr7  110733612      111393740  NM_001099658         LRRN3
24   chr7  110733612      111393740  NM_001244606        IMMP2L
25   chr7  110733612      111393740     NM_014705         DOCK4
27   chr7  121413004      121537469  NM_001206838        PTPRZ1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   52938034       53182930  NM_001286495   FAM214A
1   chr15   52938034       53182930     NM_004498   ONECUT1
4    chr2  242438219      242544674  NM_001164356     THAP4
5    chr2  242438219      242544674  NM_001271978     STK25
9    chr2  242438219      242544674     NM_032515       BOK
10   chr2  242438219      242544674     NR_033346   BOK-AS1
11   chr5  150061073      150176027  NM_001135643     DCTN4
13   chr5  150061073      150176027     NM_018047     RBM22
14   chr5  150061073      150176027     NM_032947     SMIM3,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr10  117388116      117499795     NM_207303         ATRNL1
1   chr16   15062654       15402300  NM_001270767          NTAN1
2   chr16   15062654       15402300  NM_001285445         PDXDC1
7   chr16   15062654       15402300  NM_001301064           RRN3
9   chr16   15062654       15402300     NR_037466      MIR3180-4
10  chr16   15062654       15402300     NR_106775      MIR6511B1
11  chr16   15062654       15402300     NR_106965      MIR6511B2
12  chr16   15062654       15402300     NR_123721  PKD1P6-NPIPP1
14  chr16   15062654       15402300     NR_125434   LOC100505915
15  chr16   68595098       68698033  NM_001305204          ZFP90
17  chr16   68595098       68698033  NM_001317195           CDH3
18   chr6    5189188        5313130  NM_001164840          LYRM4
20   chr6    5189188        5313130  NM_001318872          FARS2
23   chr6    5189188        5313130     NR_126015      LYRM4-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr18   63510454       63618303  NM_001317214       CDH7
3   chr4  135276400      136939543     NR_103762  LINC00613,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr3  105500055      105718461  NM_001321786          CBLB
6  chr4   29838066       31394307  NM_001173523         PCDH7
9  chr4   29838066       31394307     NR_125935  LOC102723778,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12     732756         843180  NM_001294346         NINJ2
2   chr12     732756         843180     NR_122124  LOC100049716
3   chr15  100131772      100289090  NM_001130928         MEF2A
4   chr15  100131772      100289090  NM_001284417        LYSMD4
7    chr5  125600024      125731037  NM_001146319        GRAMD3
8    chr5  125600024      125731037     NR_105039  LOC101927488
9    chr9    4514648        4862418  NM_001039395       SPATA6L
10   chr9    4514648        4862418  NM_001199853           AK3
13   chr9    4514648        4862418  NM_001286699          RCL1
15   chr9    4514648        4862418     NM_004170        SLC1A1
17   chr9    4514648        4862418     NM_017913       CDC37L1
18   chr9    4514648        4862418     NM_203453         PLPP6
19   chr9    4514648        4862418     NR_029836      MIR101-2
20   chr9    4514648        4862418     NR_121597   CDC37L1-AS1, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  104582816      105160717  NM_001007232     CARD17
1   chr11  104582816      105160717     NM_001225      CASP4
2   chr11  104582816      105160717  NM_001257119      CASP1
3   chr11  104582816      105160717     NM_021571     CARD18
5   chr11  104582816      105160717     NM_052889     CARD16
6   chr11  104582816      105160717     NR_024239      CASP5
7   chr11  104582816      105160717     NR_034064     CASP12
8   chr11  104582816      105160717     NR_034078  LOC643733
9   chr11  104582816      105160717     NR_131905    CASP1P2
10   chr5  154228088      154329854  NM_001014990     MRPL22
11   chr5  154228088      154329854  NM_001301074      CNOT8
14   chr5  154228088      154329854     NM_015465     GEMIN5
15   chr5  154228088      154329854     NM_032385     FAXDC2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr3   65823554       66138408  NM_001033057         MAGI1
2   chr3   65823554       66138408     NM_173471      SLC25A26
3   chr3   65823554       66138408     NR_046575     MAGI1-AS1
4   chr5  127792348      128571396  NM_001317984       SLC27A6
5   chr5  127792348      128571396     NM_001999          FBN2
6   chr5  127792348      128571396     NM_016048         ISOC1
7   chr5  127792348      128571396     NR_039776       MIR4633
8   chr7  110630342      110747374  NM_001099658         LRRN3
9   chr7  110630342      110747374  NM_001244606        IMMP2L
11  chr9   67126011       67386303     NR_002817        AQP7P1
12  chr9   67126011       67386303     NR_136300  LOC102724580, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   91878877       92007969  NM_001134419      CDC7
2  chr13   90855881       91000896     NR_030754    MIR622
3   chr2  133721949      133831184     NM_207363    NCKAP5
4   chr7   16476701       16698841  NM_001159767      BZW2
5   chr7   16476701       16698841  NM_001195280    LRRC72
6   chr7   16476701       16698841     NM_015464   SOSTDC1
7   chr7   16476701       16698841     NM_020319    ANKMY2
8   chr7  108500938      108723705  NM_001024607   C7orf66
9   chr7  145979282      146104914     NM_014141   CNTNAP2,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr7     110191         226286  NM_020223        FAM20C
1  chr7     110191         226286  NR_108065  LOC100507642
2  chr7     110191         226286  NR_134324  LOC105375115
3  chr7     110191         226286  NR_134325  LOC102723672,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr20   14654054       14759394     NM_080676   MACROD2
1   chr4    3947047        4237905  NM_001297551   TMEM128
2   chr4    3947047        4237905     NM_177998     OTOP1
3   chr4    3947047        4237905     NR_130741   FAM86EP,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   83748256       83913987  NM_001142699      DLG2
4   chr16   21672237       22341767  NM_001161683      OTOA
5   chr16   21672237       22341767  NM_001164579  C16orf52
6   chr16   21672237       22341767  NM_001258033    POLR3E
7   chr16   21672237       22341767  NM_001310148    NPIPB4
8   chr16   21672237       22341767     NM_003366    UQCRC2
9   chr16   21672237       22341767     NM_013302     EEF2K
12  chr16   21672237       22341767     NM_173615     VWA3A
13  chr16   21672237       22341767     NM_173806     PDZD9
14  chr16   21672237       22341767     NR_003370    RRN3P1
15   chr7  110579298      110712198  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   27121221       27276923  NM_001080406  C12orf71
1  chr12   27121221       27276923  NM_001271811     MED21
2  chr12   27121221       27276923     NM_016551    TM7SF3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   14884981       15200304  NM_001033087       MACROD2
2   chr20   14884981       15200304     NR_037841   MACROD2-AS1
4    chr4   16210942       16384831     NM_153365         TAPT1
5    chr4   16210942       16384831     NR_027696     TAPT1-AS1
6    chr8  135672469      135879342  NM_001174158          ZFAT
8    chr8  135672469      135879342     NR_029599        MIR30D
9    chr8  135672469      135879342     NR_029666        MIR30B
10   chr8  135672469      135879342     NR_125427  LOC101927845
11   chr8  135672469      135879342     NR_126028    NCRNA00250,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   40659126       40869736  NM_001258419        LRRC4C
1   chr2  186512999      186717258     NM_173651         FSIP2
2   chr2  186512999      186717258     NR_110214  LOC101927196
5   chr2  186512999      186717258     NR_144453     FSIP2-AS1
7   chr6   65498221       65791308  NM_001142800           EYS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28525928       28718500     NM_004667         HERC2
1   chr15   28525928       28718500     NR_033351       GOLGA8F
2   chr15   28525928       28718500     NR_033353       GOLGA8G
3   chr15   28525928       28718500     NR_039734     MIR4509-3
4   chr15   43916591       44050424  NM_001282309      CATSPER2
5   chr15   43916591       44050424  NM_001321927        CKMT1A
8   chr15   43916591       44050424     NM_005313         PDIA3
10  chr15   43916591       44050424     NR_002318    CATSPER2P1
13  chr17   70940468       71516147     NM_001050         SSTR2
14  chr17   70940468       71516147  NM_001098832       FAM104A
15  chr17   70940468       71516147  NM_001100621      C17orf80
17  chr17   70940468       71516147  NM_001129885        CPSF4L
18  chr17   70940468       71516147  NM_001144952          SDK2
22  chr17   70940468       71516147     NM_012121      CDC42EP4
23  chr17   70940468       71516147     NM_018714          COG1
24  chr17   70940468       71516147     NM_139177      SLC39A11
25  chr17   70940468       71516147     NR_135635  LOC101928251
26   chr4  121680137      122185838  NM_001128843         TNIP3
28   chr4  121680137      122185838     NM_018699         PRDM5
29   chr4  121680137      122185838     NM_024574          NDNF
31   chr4  169218576      169339667  NM_001012967        DDX60L
33   chr4  169218576      169339667     NM_017631         DDX60,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr18   56090477       56286532     NM_052947     ALPK2
1  chr18   56090477       56286532     NR_029667    MIR122
2  chr18   56090477       56286532     NR_039899   MIR3591
3  chr18   56090477       56286532     NR_132963  SNORA108
4   chr3   60210633       60440582  NM_001320899      FHIT,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  162816391      162950224     NM_178550     CCDC190
1   chr10   88987715       89317017  NM_001099338      NUTM2A
2   chr10   88987715       89317017  NM_001178118      MINPP1
4   chr10   88987715       89317017     NR_024397  NUTM2A-AS1
5   chr10   88987715       89317017     NR_029408   LINC00863
6   chr10   88987715       89317017     NR_039825     MIR4678
7   chr10   88987715       89317017     NR_046091   LINC00864
8   chr10   88987715       89317017     NR_075100      NUTM2D
10  chr15   26959042       27163074     NM_000810      GABRA5
12  chr15   26959042       27163074  NM_001191320      GABRB3, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12783724       13005302  NM_001009611       PRAMEF4
1    chr1   12783724       13005302  NM_001010889       PRAMEF6
2    chr1   12783724       13005302  NM_001010890       PRAMEF9
3    chr1   12783724       13005302  NM_001012276       PRAMEF8
4    chr1   12783724       13005302  NM_001013631      HNRNPCL1
5    chr1   12783724       13005302  NM_001080830      PRAMEF12
6    chr1   12783724       13005302  NM_001103170       AADACL3
7    chr1   12783724       13005302  NM_001146181      HNRNPCL3
8    chr1   12783724       13005302  NM_001146344      PRAMEF11
9    chr1   12783724       13005302  NM_001294139       PRAMEF1
10   chr1   12783724       13005302  NM_001302551      HNRNPCL4
12   chr1   12783724       13005302     NM_023014       PRAMEF2
13   chr1   12783724       13005302     NM_152290      C1orf158
14   chr1  143091038      143193281     NR_110761  LOC102723769
15  chr14   47898773       48212884  NM_001113498         MDGA2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  245021751      245287158  NM_001143943        EFCAB2
2  chr1  245021751      245287158     NM_004501        HNRNPU
4  chr1  245021751      245287158     NR_111907  LOC101928068
5  chr2  110209910      110328681  NM_001099289        SH3RF3
6  chr2  110209910      110328681  NM_001321504        SEPT10,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   51192132       51782171  NM_001330079         NRXN1
3   chr2   51192132       51782171     NR_135237     LOC730100
4   chr4   93260599       93452502     NM_001510         GRID2
5   chr7  142996863      143106891     NM_000083         CLCN1
6   chr7  142996863      143106891     NM_001224         CASP2
7   chr7  142996863      143106891  NM_001278297       FAM131B
8   chr7  142996863      143106891  NM_001322263  LOC100507507
9   chr7  142996863      143106891     NM_003461           ZYX
10  chr7  142996863      143106891     NM_005232         EPHA1
13  chr7  142996863      143106891     NR_033897     EPHA1-AS1
14  chr7  142996863      143106891     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr21   23167023       23269143     NR_109958  LINC01425
1    chr7   80042152       80178180  NM_001102386      GNAT3
2    chr7  110718251      112165035  NM_001099658      LRRN3
3    chr7  110718251      112165035  NM_001134468     LSMEM1
4    chr7  110718251      112165035  NM_001197079      IFRD1
6    chr7  110718251      112165035  NM_001244606     IMMP2L
8    chr7  110718251      112165035     NM_014705      DOCK4
9    chr7  110718251      112165035     NM_021994     ZNF277
12   chr7  110718251      112165035     NR_103806  DOCK4-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   59356774       59566130  NM_001005324    OR10V1
1  chr11   59356774       59566130  NM_001178040      STX3
2  chr11   59356774       59566130     NM_002556      OSBP
3  chr11   59356774       59566130     NM_152716     PATL1
4  chr11   59356774       59566130     NR_036120   MIR3162
5  chr11   59356774       59566130     NR_045005   OR10V2P
6  chr19   33154594       33268244  NM_001105570    NUDT19
7  chr19   33154594       33268244  NM_001110822    TDRD12
8  chr19   33154594       33268244     NM_032139   ANKRD27
9  chr19   33154594       33268244     NM_207391    RGS9BP,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr19   20297358       20649473     NM_052852       ZNF486
1   chr19   20297358       20649473     NR_036053      MIR1270
3   chr19   20297358       20649473     NR_036455      ZNF826P
4    chr6  116519353      116629589  NM_001322940          DSE
5    chr6  116519353      116629589     NM_003309       TSPYL1
6    chr6  116519353      116629589     NM_021648       TSPYL4
7    chr6  116519353      116629589     NM_152729       NT5DC1
11   chr7    4105684        5427039  NM_001033518        WIPI2
13   chr7    4105684        5427039  NM_001037165        FOXK1
14   chr7    4105684        5427039  NM_001040661      SLC29A4
15   chr7    4105684        5427039  NM_001079653         SDK1
16   chr7    4105684        5427039  NM_001080495       TNRC18
17   chr7    4105684        5427039  NM_001100600         MMD2
18   chr7    4105684        5427039  NM_001204456         RBAK
19   chr7    4105684        5427039  NM_001204513  RBAK-RBAKDN
20   chr7    4105684        5427039     NM_014855        AP5Z1
21   chr7    4105684        5427039     NM_018059        RADIL
22   chr7    4105684        5427039     NM_020144       PAPOLB
25   chr7    4105684        5427039     NR_015343       RBAKDN
26   chr7    4105684        5427039     NR_015449     RNF216P1
27   chr7    4105684        5427039     NR_034163      ZNF890P
28   chr7    4105684        5427039     NR_039800      MIR4656,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15  100140215      100525439  NM_001130928         MEF2A
1   chr15  100140215      100525439  NM_001284417        LYSMD4
4   chr15  100140215      100525439     NM_139057      ADAMTS17
5   chr15  100140215      100525439     NR_003260       DNM1P46
6   chr15  100140215      100525439     NR_135737     LOC400464
7    chr5     118826         544706  NM_001080478       LRRC14B
8    chr5     118826         544706  NM_001242412          AHRR
9    chr5     118826         544706  NM_001284351        SLC9A3
10   chr5     118826         544706     NM_004168          SDHA
11   chr5     118826         544706     NM_007277         EXOC3
12   chr5     118826         544706     NM_013232         PDCD6
13   chr5     118826         544706     NM_052909      PLEKHG4B
14   chr5     118826         544706     NM_145265       CCDC127
15   chr5     118826         544706     NR_024158        PP7080
16   chr5     118826         544706     NR_039661       MIR4456
18   chr5     118826         544706     NR_104613         HRAT5
19   chr5     118826         544706     NR_125375  LOC100288152
20   chr5     118826         544706     NR_126522     EXOC3-AS1
21   chr7   75862281       75972013  NM_001110199         SRRM3
22   chr7   75862281       75972013     NM_001540         HSPB1
23   chr7   75862281       75972013     NM_012479         YWHAG
24   chr8    7062097        7204141  NM_001256873       USP17L1
25   chr8    7062097        7204141  NM_001256874       USP17L4
26   chr8    7062097        7204141     NR_003668    DEFB109P1B
27   chr8    7062097        7204141     NR_027000     LINC00965
30   chr8    7062097        7204141     NR_027423        FAM66B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  187235416      187378798     NR_126347  LINC01036
1   chr15   30311678       30441936  NM_001282472    GOLGA8J
2   chr15   30311678       30441936     NR_026859     ULK4P3
3   chr15   30311678       30441936     NR_033933    GOLGA8T
4   chr20   14701422       14828135     NM_080676    MACROD2
5   chr21   17913859       18018978     NR_027790   MIR99AHG
7   chr21   17913859       18018978     NR_029694   MIR125B2
16  chr21   23002275       23105200     NR_038872  LINC00317,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67594198       67772340  NM_001127384        CTNNA3
2   chr10   96478800       96766517     NM_000769       CYP2C19
3   chr10   96478800       96766517     NM_000771        CYP2C9
4   chr10   96478800       96766517     NM_000772       CYP2C18
5   chr11  134269909      134601243     NM_054025        B3GAT1
6   chr11  134269909      134601243     NR_033852     LOC283177
7    chr4  169252763      169377486  NM_001012967        DDX60L
9    chr6  128619699      129214103  NM_001079823         LAMA2
10   chr6  128619699      129214103  NM_001291982         PTPRK
12   chr7   63880102       64072005  NM_001130022        ZNF680
14   chr7   63880102       64072005     NR_029404       YWHAEP1
15   chr7   63880102       64072005     NR_033245     LOC641746
16   chr7   63880102       64072005     NR_077227  LOC100128885,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr2   34154875       34908228  NR_126403  LINC01317
1  chr2   34154875       34908228  NR_126404  LINC01320
2  chr2   34154875       34908228  NR_132381  LINC01318,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48281039       49727823  NM_001004702      OR4C3
1   chr11   48281039       49727823  NM_001004725      OR4S1
2   chr11   48281039       49727823  NM_001004726      OR4X1
3   chr11   48281039       49727823  NM_001005512     OR4A47
4   chr11   48281039       49727823  NM_001005513     OR4C45
5   chr11   48281039       49727823  NM_001193472      FOLH1
6   chr11   48281039       49727823  NM_001206626    TRIM49B
7   chr11   48281039       49727823  NM_001206631    TRIM64C
8   chr11   48281039       49727823     NR_027044  LOC440040
9    chr2   69552352       69688985  NM_001244710      GFPT1
10   chr2   69552352       69688985     NM_014911       AAK1
11   chr2   69552352       69688985     NM_015700       NFU1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   59937444       60356563  NM_001320674     BNIP2
2  chr15   59937444       60356563  NM_001320929    GTF2A2
5  chr15   59937444       60356563     NM_012182     FOXB1
6   chr5      69661         200292  NM_001080478   LRRC14B
7   chr5      69661         200292     NM_052909  PLEKHG4B
8   chr9    9980824       10121615     NM_002839     PTPRD,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   63375922       63487292  NR_120403  LINC00448
1   chr9    9885595       10510342  NM_002839      PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr18   63502424       63700431  NM_001317214          CDH7
3   chr21   13465355       15993024  NM_001256370        SAMSN1
4   chr21   13465355       15993024  NM_001256579     LOC388813
6   chr21   13465355       15993024  NM_001302998          LIPI
7   chr21   13465355       15993024  NM_001320602         RBM11
8   chr21   13465355       15993024     NM_006948        HSPA13
9   chr21   13465355       15993024     NM_174981         POTED
11  chr21   13465355       15993024     NR_003087        ABCC13
13  chr21   13465355       15993024     NR_026755      CYP4F29P
14  chr21   13465355       15993024     NR_026916    ANKRD30BP2
15  chr21   13465355       15993024     NR_027270   ANKRD20A11P
16  chr21   13465355       15993024     NR_036061     MIR3118-1
17  chr21   13465355       15993024     NR_036164     MIR3156-3
18  chr21   13465355       15993024     NR_046512    SAMSN1-AS1
19  chr21   13465355       15993024     NR_110544  LOC102724188
20  chr21   13465355       15993024     NR_128718     MIR8069-2
21   chr6   20993840       21247851     NM_017774        CDKAL1
22   chr6  162195600      162298806     NM_013988         PARK2
23   chr7  110340915      110498879  NM_001244606        IMMP2L
25   chr7  132780504      132891045     NR_133931  LOC105375512,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   28688624       28806697     NR_033351    GOLGA8F
1   chr15   28688624       28806697     NR_033353    GOLGA8G
2   chr15   28688624       28806697     NR_039734  MIR4509-3
3   chr15   98266182       98371618     NR_024172  LINC00923
4    chr7  146560998      146688987     NM_014141    CNTNAP2
5    chr9  116572456      117123578     NM_000607       ORM1
6    chr9  116572456      117123578     NM_000608       ORM2
7    chr9  116572456      117123578  NM_001317950       AKNA
9    chr9  116572456      117123578  NM_001318041     ZNF618
10   chr9  116572456      117123578     NM_001633       AMBP
11   chr9  116572456      117123578     NM_032888    COL27A1
12   chr9  116572456      117123578     NM_138424      KIF12
13   chr9  116572456      117123578     NR_030255     MIR455,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   75791373       75990027  NM_001110199     SRRM3
1  chr7   75791373       75990027     NM_001540     HSPB1
2  chr7   75791373       75990027     NM_012479     YWHAG,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   45516302       45783371  NM_001308120      FAM179B
1   chr14   45516302       45783371  NM_001308133        FANCM
3   chr14   45516302       45783371     NM_002013        FKBP3
4   chr14   45516302       45783371     NM_017922       PRPF39
5   chr14   45516302       45783371     NM_018353     MIS18BP1
6   chr14   45516302       45783371     NR_003691     SNORD127
7    chr9   11752636       13278335     NM_000550        TYRP1
8    chr9   11752636       13278335  NM_001261407         MPDZ
10   chr9   11752636       13278335     NM_203403      LURAP1L
11   chr9   11752636       13278335     NR_125775  LURAP1L-AS1
12   chr9   11752636       13278335     NR_132976     SNORD137,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11  102728574      102858832     NM_002426     MMP12
1  chr11  102728574      102858832     NM_002427     MMP13
2   chr2   35668219       35813685     NR_039629  MIR548AD
3   chr3    2264433        2520243  NM_001206955     CNTN4
5   chr9    9937634       10067603     NM_002839     PTPRD,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11    1096650        1853327  NM_001001480    KRTAP5-5
1   chr11    1096650        1853327  NM_001004325    KRTAP5-2
2   chr11    1096650        1853327  NM_001005922    KRTAP5-1
3   chr11    1096650        1853327  NM_001012416    KRTAP5-6
4   chr11    1096650        1853327  NM_001012708    KRTAP5-3
5   chr11    1096650        1853327  NM_001012709    KRTAP5-4
6   chr11    1096650        1853327  NM_001170820     IFITM10
7   chr11    1096650        1853327  NM_001172223        MOB2
8   chr11    1096650        1853327  NM_001256627       BRSK2
11  chr11    1096650        1853327  NM_001304359      MUC5AC
12  chr11    1096650        1853327  NM_001318512      TOLLIP
14  chr11    1096650        1853327     NM_001909        CTSD
15  chr11    1096650        1853327     NM_002457        MUC2
16  chr11    1096650        1853327     NM_002458       MUC5B
17  chr11    1096650        1853327     NM_004420       DUSP8
19  chr11    1096650        1853327     NR_021489  KRTAP5-AS1
20  chr11    1096650        1853327     NR_026642      FAM99B
21  chr11    1096650        1853327     NR_026643      FAM99A
22  chr11    1096650        1853327     NR_029409  TOLLIP-AS1
23  chr11    1096650        1853327     NR_106802     MIR6744
24  chr15   52925735       53141999  NM_001286495     FAM214A
25  chr15   52925735       53141999     NM_004498     ONECUT1
28  chr19   24295533       24425863  NM_001278661      ZNF254
30  chr19   24295533       24425863     NR_003603    HAVCR1P1
31   chr3    1112826        1447285  NM_001289081       CNTN6,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   57006673       57625937  NM_001190478  MTRNR2L5
1   chr4    8579707        8741130  NM_001014447       CPZ
2   chr4    8579707        8741130     NM_080819     GPR78,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10    5112660        5507484  NM_001047160      NET1
1  chr10    5112660        5507484  NM_001253908    AKR1C3
3  chr10    5112660        5507484     NM_001818    AKR1C4
5  chr10    5112660        5507484     NM_024803    TUBAL3
6  chr10    5112660        5507484     NM_053049      UCN3
7  chr10    5112660        5507484     NR_027916   AKR1C8P,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr9   28160350       28596847  NM_001258282    LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    1538361        1711101     NM_018702        ADARB2
1   chr10    1538361        1711101     NR_033387    ADARB2-AS1
2    chr2   75859213       77209571  NM_001201334         GCFC2
4    chr2   75859213       77209571  NM_001330370        LRRTM4
6    chr2   75859213       77209571     NM_014763        MRPL19
7    chr2  107705233      107966986     NR_049853      MIR548AU
8    chr5  104383197      104513828     NR_000039       RAB9BP1
9    chr6  144779931      144891447     NM_007124          UTRN
10   chr8   22977992       23363216  NM_001128930        ENTPD4
11   chr8   22977992       23363216  NM_001136108        R3HCC1
12   chr8   22977992       23363216  NM_001317899         CHMP7
13   chr8   22977992       23363216     NM_002318         LOXL2
14   chr8   22977992       23363216     NM_003840     TNFRSF10D
15   chr8   22977992       23363216     NM_003844     TNFRSF10A
17   chr8   22977992       23363216     NR_033928     LOC389641
18   chr8   22977992       23363216     NR_038323  LOC100507156
19   chr9   64620746       65919268  NM_001113541     SPATA31A5
20   chr9   64620746       65919268     NM_015667     SPATA31A7
21   chr9   64620746       65919268     NR_026802       FAM74A4
22   chr9   64620746       65919268     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   30260346       30538080  NM_001282472       GOLGA8J
1  chr15   30260346       30538080  NM_001301025          TJP1
2  chr15   30260346       30538080     NR_026771  DKFZP434L187
3  chr15   30260346       30538080     NR_026859        ULK4P3
4  chr15   30260346       30538080     NR_033933       GOLGA8T
5  chr16   21854093       22044638  NM_001164579      C16orf52
6  chr16   21854093       22044638  NM_001310148        NPIPB4
7  chr16   21854093       22044638     NM_003366        UQCRC2
8  chr16   21854093       22044638     NM_173806         PDZD9
9   chr9   41530950       41642612     NR_003528       ZNF658B,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  245016100      245151339  NM_001143943        EFCAB2
2  chr1  245016100      245151339     NM_004501        HNRNPU
4  chr1  245016100      245151339     NR_111907  LOC101928068
5  chr1  245016100      245151339     NR_132782      SNORA100
6  chr4   73015717       73513557     NM_014243       ADAMTS3
7  chr5  119946595      120048715  NM_001300783         PRR16,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   27627903       27732186  NM_001034842    PTCHD3
1  chr14   42095061       42271925  NM_001346175     LRFN5
2  chr18   35079403       35190604     NM_020180     CELF4
3   chr6  144785126      144915757     NM_007124      UTRN,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  245016312      245169148  NM_001143943        EFCAB2
2   chr1  245016312      245169148     NM_004501        HNRNPU
4   chr1  245016312      245169148     NR_111907  LOC101928068
5   chr1  245016312      245169148     NR_132782      SNORA100
6   chr5   93461278       94063223  NM_001002796         MCTP1
7   chr5   93461278       94063223  NM_001145678      KIAA0825
9   chr5   93461278       94063223     NM_032290          SLF1
11  chr6   20832113       21041017     NM_017774        CDKAL1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   12786864       16313954  NM_001006624        PDPN
1    chr1   12786864       16313954  NM_001007257       PRDM2
2    chr1   12786864       16313954  NM_001009611     PRAMEF4
3    chr1   12786864       16313954  NM_001010847      LRRC38
4    chr1   12786864       16313954  NM_001010889     PRAMEF6
6    chr1   12786864       16313954  NM_001010890     PRAMEF9
7    chr1   12786864       16313954  NM_001012276     PRAMEF8
10   chr1   12786864       16313954  NM_001013407     PRAMEF5
12   chr1   12786864       16313954  NM_001013631    HNRNPCL1
13   chr1   12786864       16313954  NM_001013641      TMEM82
14   chr1   12786864       16313954  NM_001017999        KAZN
17   chr1   12786864       16313954  NM_001024215      FBLIM1
19   chr1   12786864       16313954  NM_001024661    PRAMEF14
21   chr1   12786864       16313954  NM_001039361    PRAMEF10
23   chr1   12786864       16313954  NM_001080830    PRAMEF12
24   chr1   12786864       16313954  NM_001089591      UQCRHL
25   chr1   12786864       16313954  NM_001098376    PRAMEF15
27   chr1   12786864       16313954  NM_001099790    PRAMEF19
29   chr1   12786864       16313954  NM_001099850    PRAMEF18
31   chr1   12786864       16313954  NM_001099851    PRAMEF17
33   chr1   12786864       16313954  NM_001099852    PRAMEF20
35   chr1   12786864       16313954  NM_001100631    PRAMEF22
37   chr1   12786864       16313954  NM_001103170     AADACL3
39   chr1   12786864       16313954  NM_001136216      TMEM51
41   chr1   12786864       16313954  NM_001136561    HNRNPCL2
42   chr1   12786864       16313954  NM_001146181    HNRNPCL3
43   chr1   12786864       16313954  NM_001146344    PRAMEF11
44   chr1   12786864       16313954  NM_001242884      ZBTB17
45   chr1   12786864       16313954  NM_001278501    C1orf195
47   chr1   12786864       16313954  NM_001291381   PRAMEF33P
49   chr1   12786864       16313954  NM_001294139     PRAMEF1
50   chr1   12786864       16313954  NM_001300891    PRAMEF27
53   chr1   12786864       16313954  NM_001302551    HNRNPCL4
54   chr1   12786864       16313954  NM_001306072    PRAMEF26
55   chr1   12786864       16313954  NM_001310134    PRAMEF25
56   chr1   12786864       16313954     NM_006511      RSC1A1
57   chr1   12786864       16313954     NM_007272        CTRC
59   chr1   12786864       16313954     NM_015001        SPEN
60   chr1   12786864       16313954     NM_015164     PLEKHM2
62   chr1   12786864       16313954     NM_015849      CELA2B
66   chr1   12786864       16313954     NM_023014     PRAMEF2
67   chr1   12786864       16313954     NM_024329       EFHD2
68   chr1   12786864       16313954     NM_024758       AGMAT
69   chr1   12786864       16313954     NM_032341        DDI2
70   chr1   12786864       16313954     NM_032996       CASP9
71   chr1   12786864       16313954     NM_033440      CELA2A
72   chr1   12786864       16313954     NM_052929       FHAD1
73   chr1   12786864       16313954     NM_152290    C1orf158
76   chr1   12786864       16313954     NM_207348    SLC25A34
77   chr1   12786864       16313954     NR_024279    FLJ37453
78   chr1   12786864       16313954     NR_027136  TMEM51-AS1
79   chr1   12786864       16313954     NR_039973     MIR5096
81   chr1   12786864       16313954     NR_109898     DNAJC16
82   chr1   12786864       16313954     NR_111945   PRAMEF36P
85  chr13   54078351       54560095     NR_047488   LINC00558
86   chr6  161981422      162141792     NM_013988       PARK2
87   chr7  110679812      110853496  NM_001099658       LRRN3
88   chr7  110679812      110853496  NM_001244606      IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83599920       84035046  NM_001142699          DLG2
4   chr18   35059830       35321256     NM_020180         CELF4
5   chr18   35059830       35321256     NR_036202       MIR4318
6    chr2   75923042       76028946  NM_001201334         GCFC2
9   chr22   19954924       20141043     NM_000754          COMT
12  chr22   19954924       20141043  NM_001190326         DGCR8
13  chr22   19954924       20141043  NM_001243537       CCDC188
14  chr22   19954924       20141043  NM_001278639        RANBP1
17  chr22   19954924       20141043  NM_001283116        TANGO2
20  chr22   19954924       20141043     NM_001670         ARVCF
22  chr22   19954924       20141043     NM_013373        ZDHHC8
23  chr22   19954924       20141043     NM_022727        TRMT2A
24  chr22   19954924       20141043     NR_029706        MIR185
25  chr22   19954924       20141043     NR_031706       MIR1306
26  chr22   19954924       20141043     NR_037412       MIR3618
27  chr22   19954924       20141043     NR_106874       MIR6816
28   chr7     106395         222887     NM_020223        FAM20C
29   chr7     106395         222887     NR_108065  LOC100507642
30   chr7     106395         222887     NR_134324  LOC105375115
31   chr7     106395         222887     NR_134325  LOC102723672
32   chr8   19778333       20898990     NM_000237           LPL
33   chr8   19778333       20898990  NM_001135691       SLC18A1
34   chr8   19778333       20898990     NM_001693      ATP6V1B2
35   chr8   19778333       20898990     NM_021020         LZTS1
36   chr8   19778333       20898990     NR_033894     LOC286114
37   chr8   19778333       20898990     NR_047509     LZTS1-AS1
38   chr8   19778333       20898990     NR_130773  LOC102467222,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr4   56367755       56989274  NM_001024924      EXOC1
1  chr4   56367755       56989274  NM_001267843      CLOCK
3  chr4   56367755       56989274     NM_006681        NMU
4  chr4   56367755       56989274     NM_025009     CEP135
5  chr4   56367755       56989274     NM_152401      PDCL2
6  chr4   56367755       56989274     NR_003935  LOC644145
7  chr4   56367755       56989274     NR_106988  MIR7641-2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  145282468      145965239  NM_001012758        NUDT17
1   chr1  145282468      145965239  NM_001039888      ANKRD34A
2   chr1  145282468      145965239  NM_001097612        GPR89A
3   chr1  145282468      145965239  NM_001184795        PEX11B
4   chr1  145282468      145965239  NM_001201325         PDZK1
5   chr1  145282468      145965239  NM_001277444         NBPF9
6   chr1  145282468      145965239  NM_001278267        NBPF20
7   chr1  145282468      145965239  NM_001280799       ANKRD35
8   chr1  145282468      145965239  NM_001302371        NBPF10
9   chr1  145282468      145965239  NM_001303040        ITGA10
10  chr1  145282468      145965239  NM_001303456        POLR3C
11  chr1  145282468      145965239  NM_001313972         TXNIP
13  chr1  145282468      145965239     NM_005105         RBM8A
14  chr1  145282468      145965239     NM_006099         PIAS3
17  chr1  145282468      145965239     NM_007053         CD160
18  chr1  145282468      145965239     NM_014455        RNF115
19  chr1  145282468      145965239     NM_032305       POLR3GL
20  chr1  145282468      145965239     NM_145277          HFE2
21  chr1  145282468      145965239     NM_153713         LIX1L
22  chr1  145282468      145965239     NM_203458      NOTCH2NL
23  chr1  145282468      145965239     NR_002328        GNRHR2
27  chr1  145282468      145965239     NR_104217       NBPF25P
29  chr1  145282468      145965239     NR_106794       MIR6736
30  chr1  145282468      145965239     NR_111936       PDZK1P1
31  chr1  145282468      145965239     NR_125967  LOC101928979,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   78980789       79109458     NM_000959     PTGFR
1   chr1   78980789       79109458     NM_006820    IFI44L
2  chr14   45439151       46005288  NM_001308120   FAM179B
3  chr14   45439151       46005288  NM_001308133     FANCM
5  chr14   45439151       46005288     NM_002013     FKBP3
6  chr14   45439151       46005288     NM_017922    PRPF39
7  chr14   45439151       46005288     NM_018353  MIS18BP1
8  chr14   45439151       46005288     NR_003691  SNORD127
9   chr9   41529123       41760902     NR_003528   ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  189932811      191005070  NM_001317188        BRINP3
2    chr1  189932811      191005070     NR_033922     LOC440704
3    chr1  189932811      191005070     NR_110716     LINC01351
5   chr14   79524413       79775333  NM_001272020         NRXN3
8   chr14   79524413       79775333     NR_135159  LOC105370586
9    chr4   71376962       71550851  NM_001286731          AMTN
10   chr4   71376962       71550851     NM_016519          AMBN
11   chr4   71376962       71550851     NM_031889          ENAM
12   chr4   71376962       71550851     NM_144646        JCHAIN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   73383510       74132410     NR_110676     LINC01360
2   chr22   20124082       20238457  NM_001243537       CCDC188
3   chr22   20124082       20238457     NM_013373        ZDHHC8
4   chr22   20124082       20238457     NM_023004         RTN4R
5   chr22   20124082       20238457     NR_026919     LINC00896
6   chr22   20124082       20238457     NR_031618       MIR1286
7   chr22   20124082       20238457     NR_038460     LOC284865
8    chr3  196745497      196975732  NM_001204386          DLG1
11   chr3  196745497      196975732     NM_005929         MELTF
13   chr7   63976173       64578118  NM_001007253        ERV3-1
14   chr7   63976173       64578118  NM_001130022        ZNF680
15   chr7   63976173       64578118  NM_001160183        ZNF138
16   chr7   63976173       64578118  NM_001282360        ZNF107
17   chr7   63976173       64578118     NM_015852        ZNF117
18   chr7   63976173       64578118     NM_021148        ZNF273
20   chr7   63976173       64578118     NR_033245     LOC641746
21   chr7   63976173       64578118     NR_033416        CCT6P3
23   chr7   63976173       64578118     NR_077227  LOC100128885
25   chr7   63976173       64578118     NR_106898       MIR6839,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   75867186       76038399  NM_001201334     GCFC2
3  chr2   75867186       76038399     NM_014763    MRPL19
4  chr3    3810599        3951064  NM_001324189     LRRN1
5  chr8    4297449        4439084     NM_033225     CSMD1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr7   64052945       64501286  NM_001007253        ERV3-1
1  chr7   64052945       64501286  NM_001160183        ZNF138
2  chr7   64052945       64501286  NM_001282360        ZNF107
3  chr7   64052945       64501286     NM_015852        ZNF117
4  chr7   64052945       64501286     NM_021148        ZNF273
5  chr7   64052945       64501286     NR_033416        CCT6P3
7  chr7   64052945       64501286     NR_077227  LOC100128885
9  chr7   64052945       64501286     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr15   28604586       28759842  NR_033351    GOLGA8F
1  chr15   28604586       28759842  NR_033353    GOLGA8G
2  chr15   28604586       28759842  NR_039734  MIR4509-3
4  chr16   76815974       77143605  NR_039870    MIR4719
5   chr7   11021107       11174473  NM_014660      PHF14,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   17953408       20497683  NM_001039649         ZMYM5
1   chr13   17953408       20497683  NM_001042414         PSPC1
3   chr13   17953408       20497683  NM_001271850         TPTE2
4   chr13   17953408       20497683     NM_006001        TUBA3C
5   chr13   17953408       20497683     NM_017520      MPHOSPH8
8   chr13   17953408       20497683     NR_026852     LINC00442
9   chr13   17953408       20497683     NR_027248     ANKRD26P3
10  chr13   17953408       20497683     NR_034026     LINC00421
11  chr13   17953408       20497683     NR_046988     LINC00350
12  chr13   17953408       20497683     NR_047508     LINC00417
15  chr13   17953408       20497683     NR_104118     LINC00408
16  chr13   17953408       20497683     NR_126054  LOC101928697
17  chr13   17953408       20497683     NR_138091    ANKRD20A9P
18  chr15   28190724       28592087     NM_000275          OCA2
20  chr15   28190724       28592087     NM_004667         HERC2
21   chr7   79089211       79356280     NR_038343     MAGI2-AS3
24   chr8  100650436      100923290     NM_004374         COX6C
25   chr8  100650436      100923290     NM_017890        VPS13B
26   chr9   24387194       24599315  NM_001271706        IZUMO3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   19582533       19804157  NM_001267043     AEBP2
2  chr21   28113182       28225199     NM_006988   ADAMTS1
3   chr8     202895         550665  NM_001256113      TDRP
4   chr8     202895         550665     NM_012173    FBXO25
6   chr8     202895         550665     NR_103537    FAM87A,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11  102723025      102843970     NM_002426         MMP12
1  chr11  102723025      102843970     NM_002427         MMP13
2   chr5   99591578       99748896     NR_027503  LOC100133050
3   chr6  155415800      155590045  NM_001001346        CLDN20
4   chr6  155415800      155590045  NM_001010927         TIAM2
6   chr6  155415800      155590045     NM_016020         TFB1M,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   20695679       20840352  NM_001145004      GOLGA6L6
1  chr15   20695679       20840352     NR_027411      GOLGA8CP
2  chr15   20695679       20840352     NR_036432       HERC2P3
3   chr2   36255457       36684004     NM_016441         CRIM1
4   chr2   36255457       36684004     NR_037631  LOC100288911
5   chr2   52147525       52276603     NR_135237     LOC730100
6   chr5  117388921      117505592     NR_104997  LOC102467224,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30221094       30823039  NM_001282472       GOLGA8J
1   chr15   30221094       30823039  NM_001282484       GOLGA8R
2   chr15   30221094       30823039  NM_001301025          TJP1
3   chr15   30221094       30823039     NM_139320      CHRFAM7A
4   chr15   30221094       30823039     NR_026771  DKFZP434L187
5   chr15   30221094       30823039     NR_026859        ULK4P3
6   chr15   30221094       30823039     NR_033933       GOLGA8T
7   chr15   78334010       78495433  NM_001101404         SH2D7
8   chr15   78334010       78495433  NM_001199377        ACSBG1
9   chr15   78334010       78495433  NM_001301224          CIB2
10  chr15   78334010       78495433     NM_005530         IDH3A
11  chr15   78334010       78495433     NM_015079       TBC1D2B
12  chr21   22512100       22747238     NM_004540         NCAM2
13   chr5   66222454       66358482  NM_001164664         MAST4
18   chr5   66222454       66358482     NR_111908     MAST4-AS1
19   chr7   56996953       57199782     NM_033273        ZNF479
20   chr7   56996953       57199782     NR_036246     MIR4283-1
21   chr9   39056712       39188513     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr21   22405710       22671453     NM_004540         NCAM2
1    chr3   60401753       60543757  NM_001320899          FHIT
2    chr4   71324315       71482510  NM_001145006          MUC7
4    chr4   71324315       71482510  NM_001286731          AMTN
5    chr4   71324315       71482510     NM_016519          AMBN
7    chr6  162487265      162631972     NM_013988         PARK2
8    chr7   64027349       64302638  NM_001160183        ZNF138
9    chr7   64027349       64302638  NM_001282360        ZNF107
10   chr7   64027349       64302638     NR_033245     LOC641746
12   chr7   64027349       64302638     NR_077227  LOC100128885
14   chr7   64027349       64302638     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate    tx_name   gene_name
0  chr10   81494115       81685394  NR_002724       MBL1P
1  chr10   81494115       81685394  NR_029407   LOC642361
2  chr10   81494115       81685394  NR_033857     BMS1P21
3  chr10   81494115       81685394  NR_120611  NUTM2B-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   97209735       97319398  NM_001115016        KANSL3
1   chr2   97209735       97319398  NM_001293083        FER1L5
2   chr2   97209735       97319398  NM_001319085        ARID5A
5   chr2  110132140      110351989  NM_001099289        SH3RF3
6   chr2  110132140      110351989  NM_001321504        SEPT10
8   chr7  133270650      134007407     NM_021807         EXOC4
9   chr7  133270650      134007407     NM_032826       SLC35B4
10  chr7  133270650      134007407     NM_144648         LRGUK
11  chr7  133270650      134007407     NR_120513  LOC101928861,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   27582716       27764125  NM_001034842    PTCHD3
1  chr10   27582716       27764125     NR_138082   ARMC4P1
2   chr5  161107216      161209261     NM_000811    GABRA6,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr5   99369385       99735409  NR_027503  LOC100133050,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16    6745438        6891803  NM_001142334        RBFOX1
3  chr16   21546582       21673808  NM_001077180        METTL9
5  chr16   21546582       21673808     NM_005849         IGSF6
6  chr16   21546582       21673808     NR_110930  LOC101927814
7   chr4   94052009       94383277     NM_001510         GRID2,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   31475715       31614580  NM_032849      MEDAG
1  chr13   31475715       31614580  NM_152325      TEX26
2  chr13   31475715       31614580  NR_038287  TEX26-AS1
4  chr13   85970224       86105542  NR_046989  LINC00351,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2  242418892      242550083  NM_001164356         THAP4
1  chr2  242418892      242550083  NM_001271978         STK25
4  chr2  242418892      242550083     NM_014808         FARP2
6  chr2  242418892      242550083     NM_032515           BOK
7  chr2  242418892      242550083     NR_033346       BOK-AS1
8  chr6  140396735      140681157     NR_037441       MIR3668
9  chr6  140396735      140681157     NR_121622  LOC100507477,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   42635666       42884018  NM_001130447     HAUS2
1   chr15   42635666       42884018  NM_001284306    ZNF106
4   chr15   42635666       42884018     NM_003825    SNAP23
5   chr15   42635666       42884018     NM_020759    STARD9
6   chr15   42635666       42884018     NM_153260    LRRC57
7   chr15   42635666       42884018     NM_173087     CAPN3
10  chr15   42635666       42884018     NM_198141      GANC
11   chr5  109781964      110092741  NM_001039763   TMEM232
12   chr5  109781964      110092741  NM_001303250  SLC25A46
14   chr5  109781964      110092741     NR_031644  MIR548F3
15   chr6  140434809      140539095     NR_037441   MIR3668
16   chr8    8393685        8655788     NM_004225    MFHAS1
17   chr8    8393685        8655788     NM_194284    CLDN23,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr19    9406937        9570902  NM_001172650  ZNF559-ZNF177
1   chr19    9406937        9570902  NM_001172651         ZNF177
2   chr19    9406937        9570902  NM_001202406         ZNF559
5   chr19    9406937        9570902  NM_001271314         ZNF266
7   chr19    9406937        9570902     NM_198535         ZNF699
8   chr19   20245418       20505638     NM_052852         ZNF486
9    chr4   71354153       71741840  NM_001037442          RUFY3
10   chr4   71354153       71741840  NM_001098477          GRSF1
12   chr4   71354153       71741840  NM_001286731           AMTN
17   chr4   71354153       71741840     NM_016519           AMBN
18   chr4   71354153       71741840     NM_020368           UTP3
19   chr4   71354153       71741840     NM_031889           ENAM
20   chr4   71354153       71741840     NM_144646         JCHAIN
21   chr8    3630874        3752554     NM_033225          CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   11567965       12023970  NM_001080491        USP6NL
2   chr10   11567965       12023970     NM_015542          UPF2
3   chr10   11567965       12023970     NM_024693        ECHDC3
5   chr10   11567965       12023970     NM_153256       PROSER2
6   chr10   11567965       12023970     NR_038222   PROSER2-AS1
8   chr16   16405842       16517292  NM_001282511        NPIPA8
9   chr16   16405842       16517292     NR_036447        PKD1P1
10  chr16   16405842       16517292     NR_103772  LOC100288162
11  chr16   16405842       16517292     NR_106766     MIR6511A1
12  chr16   16405842       16517292     NR_106971     MIR6511A4
13  chr16   16405842       16517292     NR_107060     MIR6770-2
14  chr22   20093951       20222620  NM_001190326         DGCR8
15  chr22   20093951       20222620  NM_001243537       CCDC188
16  chr22   20093951       20222620  NM_001278639        RANBP1
19  chr22   20093951       20222620     NM_013373        ZDHHC8
20  chr22   20093951       20222620     NM_022727        TRMT2A
21  chr22   20093951       20222620     NR_026919     LINC00896
22  chr22   20093951       20222620     NR_038460     LOC284865
23  chr22   20093951       20222620     NR_106874       MIR6816
24   chr4  190373222      190611919     NR_121679     LINC01262
25   chr4  190373222      190611919     NR_135513  LOC105379514,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81432483       82808880     NM_000429         MAT1A
1   chr10   81432483       82808880  NM_001012973         PLAC9
2   chr10   81432483       82808880  NM_001128309       TSPAN14
3   chr10   81432483       82808880  NM_001145719        SH2D4B
4   chr10   81432483       82808880  NM_001243778       FAM213A
7   chr10   81432483       82808880  NM_001269053         DYDC1
8   chr10   81432483       82808880  NM_001270041         DYDC2
10  chr10   81432483       82808880  NM_001270367       TMEM254
13  chr10   81432483       82808880  NM_001278407        ANXA11
15  chr10   81432483       82808880  NM_001278495        NUTM2B
17  chr10   81432483       82808880     NM_003019         SFTPD
20  chr10   81432483       82808880     NR_002724         MBL1P
21  chr10   81432483       82808880     NR_027431   TMEM254-AS1
22  chr10   81432483       82808880     NR_027512       BEND3P3
23  chr10   81432483       82808880     NR_029407     LOC642361
24  chr10   81432483       82808880     NR_033857       BMS1P21
25  chr10   81432483       82808880     NR_038464     LINC00857
26  chr10   81432483       82808880     NR_120611    NUTM2B-AS1
29  chr10   81432483       82808880     NR_120661  LOC101929574
30  chr10   81432483       82808880     NR_120662  LOC102723703
31  chr10   81432483       82808880     NR_136612  LOC100130698
33   chr6  162809235      165353510  NM_001080378         PACRG
35   chr6  162809235      165353510     NM_006775           QKI
36   chr6  162809235      165353510     NM_013988         PARK2
37   chr6  162809235      165353510     NR_028390     PACRG-AS1
38   chr6  162809235      165353510     NR_033862  DKFZp451B082
39   chr6  162809235      165353510     NR_037593          CAHM
40   chr6  162809235      165353510     NR_110871     PACRG-AS2
42   chr6  162809235      165353510     NR_122120     PACRG-AS3
43   chr6  162809235      165353510     NR_131926         MEAT6
44   chr6  162809235      165353510     NR_134620  LOC102724152
45   chr9   14934158       15048363     NR_003920     LOC389705
46   chr9   38942294       39270837     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr13  113441229      113721104  NM_001112732        MCF2L
4   chr13  113441229      113721104     NM_015205       ATP11A
5   chr13  113441229      113721104     NR_034002    MCF2L-AS1
6   chr15  100140246      100379159  NM_001130928        MEF2A
7   chr15  100140246      100379159  NM_001284417       LYSMD4
10  chr15  100140246      100379159     NR_003260      DNM1P46
11  chr15  100140246      100379159     NR_135737    LOC400464
12  chr20   14802526       14932495     NM_080676      MACROD2
13  chr20   14802526       14932495     NR_037841  MACROD2-AS1
15  chr21   22367116       22471717     NM_004540        NCAM2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   67673925       68708876  NM_001127384        CTNNA3
2  chr10   67673925       68708876     NM_178011        LRRTM3
3  chr10   67673925       68708876     NR_111911  LOC101928961
4  chr11  132232014      132378949  NM_001012393         OPCML,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   27624623       27797903  NM_001034842    PTCHD3
1  chr10   27624623       27797903  NM_001256411     RAB18,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16    7070013        7526222  NM_001142334     RBFOX1
4   chr19     933557        1707634     NM_000156       GAMT
5   chr19     933557        1707634     NM_000455      STK11
6   chr19     933557        1707634  NM_001001975      ATP5D
7   chr19     933557        1707634     NM_001018      RPS15
8   chr19     933557        1707634  NM_001039848       GPX4
9   chr19     933557        1707634  NM_001100122      SBNO2
10  chr19     933557        1707634  NM_001136139       TCF3
11  chr19     933557        1707634  NM_001174118      MEX3D
12  chr19     933557        1707634  NM_001243079       PLK5
13  chr19     933557        1707634  NM_001258328   ARHGAP45
14  chr19     933557        1707634     NM_001280      CIRBP
15  chr19     933557        1707634  NM_001281454       MBD3
21  chr19     933557        1707634  NM_001316323     POLR2E
23  chr19     933557        1707634     NM_001405      EFNA2
26  chr19     933557        1707634     NM_005224     ARID3A
27  chr19     933557        1707634     NM_005883       APC2
28  chr19     933557        1707634     NM_006830     UQCR11
31  chr19     933557        1707634     NM_017573      PCSK4
32  chr19     933557        1707634     NM_017914   C19orf24
33  chr19     933557        1707634     NM_019112      ABCA7
34  chr19     933557        1707634     NM_024100      WDR18
35  chr19     933557        1707634     NM_024407     NDUFS7
36  chr19     933557        1707634     NM_032853       MUM1
37  chr19     933557        1707634     NM_033420    TMEM259
38  chr19     933557        1707634     NM_138393      REEP6
39  chr19     933557        1707634     NM_138690     GRIN3B
41  chr19     933557        1707634     NM_152482   C19orf25
42  chr19     933557        1707634     NM_152769      CBARP
43  chr19     933557        1707634     NM_170711     DAZAP1
44  chr19     933557        1707634     NM_177401       MIDN
45  chr19     933557        1707634     NM_201277       CNN2
46  chr19     933557        1707634     NM_213604   ADAMTSL5
49  chr19     933557        1707634     NR_027271  CIRBP-AS1
50  chr19     933557        1707634     NR_125730     RNU6-2
51   chr4   91185901       91330574  NM_001145065     CCSER1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   38210120       38409570  NM_001310135       TTC6
1  chr14   38210120       38409570     NR_135286  LINC00517
2  chr16   22234572       22345773  NM_001258033     POLR3E
3  chr16   22234572       22345773     NM_013302      EEF2K
4   chr8  103976947      104095027     NM_001695   ATP6V1C1
5   chr8  103976947      104095027     NR_126339  AZIN1-AS1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  145284160      145422058  NM_001277444          NBPF9
1    chr1  145284160      145422058  NM_001278267         NBPF20
2    chr1  145284160      145422058  NM_001302371         NBPF10
3    chr1  145284160      145422058     NM_145277           HFE2
4    chr1  145284160      145422058     NM_203458       NOTCH2NL
5    chr1  145284160      145422058     NR_104217        NBPF25P
6    chr1  145284160      145422058     NR_125967   LOC101928979
7   chr16   29484809       30483183     NM_000034          ALDOA
8   chr16   29484809       30483183  NM_001014999          SLX1A
9   chr16   29484809       30483183  NM_001017390        SULT1A4
10  chr16   29484809       30483183  NM_001030288            SPN
11  chr16   29484809       30483183  NM_001031827          BOLA2
12  chr16   29484809       30483183  NM_001040056          MAPK3
13  chr16   29484809       30483183  NM_001083613        TMEM219
14  chr16   29484809       30483183  NM_001109659       C16orf92
16  chr16   29484809       30483183  NM_001114099         SEZ6L2
18  chr16   29484809       30483183  NM_001142305         ZNF771
19  chr16   29484809       30483183  NM_001145524          YPEL3
20  chr16   29484809       30483183  NM_001193333         CORO1A
21  chr16   29484809       30483183  NM_001214906          ZNF48
25  chr16   29484809       30483183  NM_001243646         CD2BP2
26  chr16   29484809       30483183  NM_001256269          KIF22
28  chr16   29484809       30483183  NM_001256443          PRRT2
29  chr16   29484809       30483183  NM_001276275            MAZ
30  chr16   29484809       30483183  NM_001282062          DOC2A
33  chr16   29484809       30483183  NM_001286585          CDIPT
34  chr16   29484809       30483183  NM_001293204            MVP
35  chr16   29484809       30483183  NM_001303507          PPP4C
36  chr16   29484809       30483183  NM_001304562         INO80E
37  chr16   29484809       30483183  NM_001318249           QPRT
38  chr16   29484809       30483183  NM_001318504         FAM57B
39  chr16   29484809       30483183  NM_001321892        NPIPB13
40  chr16   29484809       30483183  NM_001324458          MYLPF
45  chr16   29484809       30483183     NM_003609         HIRIP3
46  chr16   29484809       30483183     NM_004608           TBX6
47  chr16   29484809       30483183     NM_004783          TAOK2
50  chr16   29484809       30483183     NM_012248         SEPHS2
52  chr16   29484809       30483183     NM_015527       TBC1D10B
54  chr16   29484809       30483183     NM_024096         DCTPP1
55  chr16   29484809       30483183     NM_024307          GDPD3
56  chr16   29484809       30483183     NM_024516          PAGR1
59  chr16   29484809       30483183     NM_052838          SEPT1
60  chr16   29484809       30483183     NM_152338           ZG16
62  chr16   29484809       30483183     NM_175900       C16orf54
63  chr16   29484809       30483183     NM_178863         KCTD13
64  chr16   29484809       30483183     NM_181718         ASPHD1
66  chr16   29484809       30483183     NR_002453         SMG1P5
67  chr16   29484809       30483183     NR_002454      LOC606724
68  chr16   29484809       30483183     NR_002556      LOC388242
69  chr16   29484809       30483183     NR_015396      CDIPT-AS1
71  chr16   29484809       30483183     NR_037608  SLX1A-SULT1A3
72  chr16   29484809       30483183     NR_049833      MIR3680-2
75  chr16   29484809       30483183     NR_135192   LOC101928595
77  chr16   29484809       30483183     NR_135305         SMG1P2
79   chr4  118869686      118995294     NM_004784          NDST3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr18   63454173       63598175  NM_001317214      CDH7,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   14872733       14985287     NM_015209      KAZN
2   chr10  117397857      117553290     NM_207303    ATRNL1
3   chr22   19922337       20047433     NM_000754      COMT
6   chr22   19922337       20047433  NM_001282512    TXNRD2
7   chr22   19922337       20047433  NM_001283116    TANGO2
10  chr22   19922337       20047433     NM_001670     ARVCF
13  chr22   19922337       20047433     NR_029706    MIR185
14  chr22   19922337       20047433     NR_039918   MIR4761
15   chr7  110639998      110917272  NM_001099658     LRRN3
16   chr7  110639998      110917272  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   13054045       13212240  NM_001013407       PRAMEF5
1    chr1   13054045       13212240  NM_001136561      HNRNPCL2
2    chr1   13054045       13212240  NM_001306072      PRAMEF26
3    chr1   13054045       13212240  NM_001310134      PRAMEF25
4    chr1   13054045       13212240     NR_111945     PRAMEF36P
6   chr15   87278574       87604233     NM_152336         AGBL1
7   chr15   87278574       87604233     NR_135682  LOC105370954
8   chr15   87278574       87604233     NR_135683  LOC102724452
9    chr5  104426276      104588859     NR_000039       RAB9BP1
10   chr8  110218330      110348638  NM_001128211        NUDCD1
11   chr8  110218330      110348638  NM_001193557          ENY2,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr16   29518547       29628359  NR_049833  MIR3680-2
1  chr16   29518547       29628359  NR_135305     SMG1P2
3   chr5  104245179      104445657  NR_000039    RAB9BP1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   89189126       89407238     NR_047021  LINC00433
1   chr13   89189126       89407238     NR_047490  LINC00560
2   chr15   20650737       21949259  NM_001145004   GOLGA6L6
3   chr15   20650737       21949259  NM_001277303     POTEB2
4   chr15   20650737       21949259     NM_207355     POTEB3
5   chr15   20650737       21949259     NR_027053  LOC646214
6   chr15   20650737       21949259     NR_027411   GOLGA8CP
7   chr15   20650737       21949259     NR_027992     NBEAP1
8   chr15   20650737       21949259     NR_028506      NF1P2
9   chr15   20650737       21949259     NR_036062  MIR3118-2
10  chr15   20650737       21949259     NR_036432    HERC2P3
11  chr15   20650737       21949259     NR_040094  LINC01193
12  chr15   20650737       21949259     NR_049895  MIR5701-2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   85677811       85809603  NM_001243137      PDE8A
1  chr15   85677811       85809603  NM_001310153   GOLGA6L3
3  chr15   85677811       85809603     NR_049748  LOC642423
4  chr20   25388936       25530829  NM_001318226       NINL
5  chr20   25388936       25530829     NM_021067      GINS1
6   chr7   71506914       71765954  NM_001017440      CALN1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3   41286094       41432658  NM_001322500      ULK4,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14806777       15132436     NM_080676      MACROD2
1  chr20   14806777       15132436     NR_037841  MACROD2-AS1
3   chr5   93369062       93498797  NM_001145678     KIAA0825
4   chr5   93369062       93498797  NM_001163418      FAM172A,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  121445421      121607075  NM_001206838    PTPRZ1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72558236       72714585     NM_013381         TRHDE
1   chr12   72558236       72714585     NR_026836     TRHDE-AS1
3   chr17   78289245       78445586  NM_001164637         ENDOV
5   chr17   78289245       78445586  NM_001256071        RNF213
6   chr17   78289245       78445586     NM_002522         NPTX1
8   chr17   78289245       78445586     NR_029376  LOC100294362
9   chr17   78289245       78445586     NR_039883       MIR4730
10   chr2  133638142      133769155     NM_207363        NCKAP5
11   chr2  133638142      133769155     NR_135572  LOC101928185
12  chr20   14652787       15904619  NM_001033087       MACROD2
14  chr20   14652787       15904619     NR_037841   MACROD2-AS1
16  chr20   14652787       15904619     NR_130924     LOC613266
18   chr3  192374023      192624611     NM_004113         FGF12
19   chr3  192374023      192624611     NM_178496        MB21D2
20   chr4   69269478       69520466     NM_001076       UGT2B15
21   chr4   69269478       69520466     NM_001077       UGT2B17
22   chr4   69269478       69520466     NM_014058     TMPRSS11E
23   chr9   30616925       32107003     NR_135134     LINC01243,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27642599       27881285  NM_001034842        PTCHD3
1   chr10   27642599       27881285  NM_001256411         RAB18
2   chr16    6337721        6535256  NM_001308117        RBFOX1
4   chr17     139464         430534  NM_001013672      C17orf97
5   chr17     139464         430534  NM_001128159         VPS53
6   chr17     139464         430534  NM_001190411        RPH3AL
7   chr17     139464         430534     NM_182705         RFLNB
8   chr17     139464         430534     NR_040011  LOC100506388
9   chr17     139464         430534     NR_136407  LOC105371430
10   chr7   64070467       64208150  NM_001282360        ZNF107
11   chr7   64070467       64208150     NR_077227  LOC100128885
13   chr7   64070467       64208150     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21711963       23049752  NM_001135865        NPIPB5
1   chr16   21711963       23049752  NM_001161683          OTOA
2   chr16   21711963       23049752  NM_001164579      C16orf52
3   chr16   21711963       23049752  NM_001258033        POLR3E
4   chr16   21711963       23049752  NM_001310148        NPIPB4
5   chr16   21711963       23049752     NM_001802          CDR2
6   chr16   21711963       23049752     NM_003366        UQCRC2
7   chr16   21711963       23049752     NM_006043        HS3ST2
8   chr16   21711963       23049752     NM_013302         EEF2K
11  chr16   21711963       23049752     NM_173615         VWA3A
12  chr16   21711963       23049752     NM_173806         PDZD9
13  chr16   21711963       23049752     NR_003370        RRN3P1
14  chr16   21711963       23049752     NR_003676     LOC653786
15  chr16   21711963       23049752     NR_027154        SMG1P1
16  chr16   21711963       23049752     NR_027460        RRN3P3
17  chr16   21711963       23049752     NR_136333       MFSD13B
18   chr4   69229659       69514926     NM_001076       UGT2B15
19   chr4   69229659       69514926     NM_001077       UGT2B17
20   chr4   69229659       69514926     NM_014058     TMPRSS11E
21   chr6   38082495       38187865  NM_001172418         BTBD9
22   chr6   38082495       38187865     NM_021943        ZFAND3
24   chr7   75802255       76363557  NM_001102594          DTX2
26   chr7   75802255       76363557  NM_001110199         SRRM3
27   chr7   75802255       76363557  NM_001110354           ZP3
28   chr7   75802255       76363557     NM_001540         HSPB1
30   chr7   75802255       76363557     NM_012479         YWHAG
31   chr7   75802255       76363557     NM_030570         UPK3B
32   chr7   75802255       76363557     NM_080744         SSC4D
33   chr7   75802255       76363557     NM_152992        POMZP3
34   chr7   75802255       76363557     NR_003262        FDPSP2
35   chr7   75802255       76363557     NR_029411  LOC100133091
36   chr9   38949822       39327527     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49587701       50074110  NM_001323575         AGBL4
1    chr1   49587701       50074110     NR_046839     AGBL4-IT1
2    chr1   49587701       50074110     NR_125988  LOC101929721
3   chr10   96429745       96692701     NM_000769       CYP2C19
4   chr10   96429745       96692701     NM_000772       CYP2C18
5    chr2   69545526       69650474  NM_001244710         GFPT1
6    chr2   69545526       69650474     NM_015700          NFU1
7   chr22   20064033       20330462  NM_001190326         DGCR8
8   chr22   20064033       20330462  NM_001243537       CCDC188
9   chr22   20064033       20330462  NM_001278639        RANBP1
12  chr22   20064033       20330462     NM_013373        ZDHHC8
13  chr22   20064033       20330462     NM_022727        TRMT2A
14  chr22   20064033       20330462     NM_023004         RTN4R
15  chr22   20064033       20330462     NM_033257        DGCR6L
16  chr22   20064033       20330462     NR_026919     LINC00896
17  chr22   20064033       20330462     NR_031618       MIR1286
18  chr22   20064033       20330462     NR_031706       MIR1306
19  chr22   20064033       20330462     NR_037412       MIR3618
20  chr22   20064033       20330462     NR_038460     LOC284865
21  chr22   20064033       20330462     NR_106874       MIR6816
22  chr22   20064033       20330462     NR_136572  LOC101927859
23   chr9   38940328       39112011     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  241704785      242003386     NM_001821       CHML
1   chr1  241704785      242003386     NM_003679        KMO
2   chr1  241704785      242003386     NM_014322       OPN3
3   chr1  241704785      242003386     NM_144625      WDR64
4  chr11    6747825        6860735  NM_001004489     OR2AG1
5  chr11    6747825        6860735  NM_001004490     OR2AG2
6  chr11    6747825        6860735     NM_003696      OR6A2
7  chr13   63377037       63568940     NR_120403  LINC00448,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48307652       48408433  NM_001004702         OR4C3
1   chr11   48307652       48408433  NM_001004725         OR4S1
2   chr11   48307652       48408433  NM_001005513        OR4C45
3   chr12  120524487      120751672  NM_001167606         RAB35
4   chr12  120524487      120751672     NM_002859           PXN
5   chr12  120524487      120751672     NM_006836          GCN1
6   chr12  120524487      120751672     NM_012240         SIRT4
8   chr12  120524487      120751672     NM_053275         RPLP0
9   chr12  120524487      120751672     NM_207311        BICDL1
10  chr12  120524487      120751672     NR_038924       PXN-AS1
11  chr12  120524487      120751672     NR_039719       MIR4498
12  chr13  102854507      103075263  NM_001321932         FGF14
19  chr13  102854507      103075263     NR_036486     FGF14-IT1
20  chr13  102854507      103075263     NR_036487     FGF14-AS2
21  chr13  102854507      103075263     NR_125912     FGF14-AS1
22  chr15   20721439       22064548  NM_001145004      GOLGA6L6
23  chr15   20721439       22064548  NM_001277303        POTEB2
24  chr15   20721439       22064548  NM_001277304         POTEB
25  chr15   20721439       22064548     NM_207355        POTEB3
27  chr15   20721439       22064548     NR_024387       CXADRP2
28  chr15   20721439       22064548     NR_027053     LOC646214
29  chr15   20721439       22064548     NR_027411      GOLGA8CP
30  chr15   20721439       22064548     NR_027992        NBEAP1
31  chr15   20721439       22064548     NR_028506         NF1P2
32  chr15   20721439       22064548     NR_036062     MIR3118-2
33  chr15   20721439       22064548     NR_036063     MIR3118-3
34  chr15   20721439       22064548     NR_040094     LINC01193
35  chr15   20721439       22064548     NR_049895     MIR5701-2
37   chr6   38070220       38385282  NM_001172418         BTBD9
38   chr6   38070220       38385282     NM_021943        ZFAND3
40   chr7   53240128       54050409     NR_038371     LINC01446
41   chr8    2091147        2396756     NM_003970         MYOM2
42   chr8    2091147        2396756     NR_125425  LOC101927815
43   chr9   41888756       42100168     NR_003670        FGF7P3
44   chr9   41888756       42100168     NR_015363         GLIDR
47   chr9   41888756       42100168     NR_126048  LOC102724238
48   chr9   41888756       42100168     NR_126049     LOC554249,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr10   68633913       68735922  NM_001127384        CTNNA3
2    chr10   68633913       68735922     NM_178011        LRRTM3
3    chr10   68633913       68735922     NR_111911  LOC101928961
4    chr15   24419835       25976076     NM_003097         SNRPN
5    chr15   24419835       25976076     NM_018958         NPAP1
6    chr15   24419835       25976076     NM_022804         SNURF
9    chr15   24419835       25976076     NM_024490        ATP10A
10   chr15   24419835       25976076     NM_130838         UBE3A
12   chr15   24419835       25976076     NR_001289     SNORD109B
14   chr15   24419835       25976076     NR_001290   SNORD116-19
16   chr15   24419835       25976076     NR_001291    SNORD115-1
17   chr15   24419835       25976076     NR_001292      SNORD108
18   chr15   24419835       25976076     NR_001293      SNORD107
19   chr15   24419835       25976076     NR_001294       SNORD64
20   chr15   24419835       25976076     NR_003294    SNORD115-2
21   chr15   24419835       25976076     NR_003295    SNORD115-3
22   chr15   24419835       25976076     NR_003296    SNORD115-4
23   chr15   24419835       25976076     NR_003297    SNORD115-5
26   chr15   24419835       25976076     NR_003298    SNORD115-6
27   chr15   24419835       25976076     NR_003299    SNORD115-7
28   chr15   24419835       25976076     NR_003300    SNORD115-8
29   chr15   24419835       25976076     NR_003301    SNORD115-9
32   chr15   24419835       25976076     NR_003302   SNORD115-10
34   chr15   24419835       25976076     NR_003303   SNORD115-11
38   chr15   24419835       25976076     NR_003305   SNORD115-13
39   chr15   24419835       25976076     NR_003306   SNORD115-14
40   chr15   24419835       25976076     NR_003307   SNORD115-15
41   chr15   24419835       25976076     NR_003308   SNORD115-16
42   chr15   24419835       25976076     NR_003309   SNORD115-17
45   chr15   24419835       25976076     NR_003312   SNORD115-20
..     ...        ...            ...           ...           ...
77   chr15   24419835       25976076     NR_003347   SNORD115-32
78   chr15   24419835       25976076     NR_003348   SNORD115-33
79   chr15   24419835       25976076     NR_003349   SNORD115-34
80   chr15   24419835       25976076     NR_003350   SNORD115-35
81   chr15   24419835       25976076     NR_003352   SNORD115-37
82   chr15   24419835       25976076     NR_003353   SNORD115-38
83   chr15   24419835       25976076     NR_003354   SNORD115-39
84   chr15   24419835       25976076     NR_003355   SNORD115-40
85   chr15   24419835       25976076     NR_003356   SNORD115-41
86   chr15   24419835       25976076     NR_003359   SNORD115-44
87   chr15   24419835       25976076     NR_003360   SNORD116-29
88   chr15   24419835       25976076     NR_003361   SNORD116-28
89   chr15   24419835       25976076     NR_003362   SNORD115-48
90   chr15   24419835       25976076     NR_003495   SNORD115-24
91   chr15   24419835       25976076     NR_003496   SNORD115-27
92   chr15   24419835       25976076     NR_003497   SNORD115-28
93   chr15   24419835       25976076     NR_003498   SNORD115-45
94   chr15   24419835       25976076     NR_003499   SNORD115-47
95   chr15   24419835       25976076     NR_022008         PWAR5
96   chr15   24419835       25976076     NR_022009         PWAR1
97   chr15   24419835       25976076     NR_022010         PWAR4
98   chr15   24419835       25976076     NR_022011        PWARSN
99   chr15   24419835       25976076     NR_023915           IPW
100  chr15   24419835       25976076     NR_026646         PWRN1
101  chr15   24419835       25976076     NR_047032   SNORD116-30
102  chr15   24419835       25976076     NR_047033   SNORD115-46
103  chr15   24419835       25976076     NR_130780         PWRN3
104   chr2  193636846      193919685     NR_002769        PCGEM1
105   chr3   60240460       60455582  NM_001320899          FHIT
106   chr9   30338244       30451874     NR_046204     LINC01242

[88 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  135233326      135638422     NM_000773        CYP2E1
1   chr10  135233326      135638422  NM_001012508          SPRN
2   chr10  135233326      135638422  NM_001080998         FRG2B
3   chr10  135233326      135638422  NM_001143763         SYCE1
6   chr10  135233326      135638422     NM_138384          MTG1
7   chr10  135233326      135638422     NR_002934        SCART1
8   chr10  135233326      135638422     NR_033789        SPRNP1
9   chr14   39055971       39438761     NR_039982     LINC00639
10  chr14   39055971       39438761     NR_135256  LOC105370457
11  chr15   54587298       54893446  NM_001080534        UNC13C
13   chr7  102131851      102232607  NM_001031618        SPDYE2
14   chr7  102131851      102232607  NM_001097615       POLR2J3
15   chr7  102131851      102232607  NM_001277335        RASA4B
17   chr7  102131851      102232607     NM_006989         RASA4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   75967345       76075089  NM_001130058    SLC44A5
4   chr13   63131391       63324791     NR_047029  LINC00448
5   chr14   38192920       38623812  NM_001310135       TTC6
6   chr14   38192920       38623812     NR_135286  LINC00517
7    chr2   50750432       51553664  NM_001330079      NRXN1
10   chr2   50750432       51553664     NR_130470    MIR8485
11   chr2   50750432       51553664     NR_135237  LOC730100
12   chr9   28630791       28768190  NM_001258282     LINGO2,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   31452971       31631857  NM_032849      MEDAG
1  chr13   31452971       31631857  NM_152325      TEX26
2  chr13   31452971       31631857  NR_038287  TEX26-AS1
4  chr13   31452971       31631857  NR_103813  LINC00545
5   chr9  102065963      102180535  NR_102270       NAMA,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143102903      143605956     NR_110761  LOC102723769
1  chr11    6724237        6853807  NM_001004489        OR2AG1
2  chr11    6724237        6853807  NM_001004490        OR2AG2
3  chr11    6724237        6853807     NM_003696         OR6A2
4  chr11    6724237        6853807     NR_003945        GVINP1
5   chr2  133729459      133873066     NM_207363        NCKAP5
6   chr7  117506660      117708525     NM_033427       CTTNBP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   21269878       21940504  NM_001288713         NELL1
1   chr16   15449770       15868889  NM_001040113         MYH11
2   chr16   15449770       15868889  NM_001128423        MPV17L
3   chr16   15449770       15868889  NM_001142469      C16orf45
4   chr16   15449770       15868889  NM_001143979          NDE1
5   chr16   15449770       15868889  NM_001184998      KIAA0430
6   chr16   15449770       15868889  NM_001277325        NPIPA5
9   chr16   15449770       15868889     NR_030159        MIR484
10  chr16   15449770       15868889     NR_106761       MIR6506
11   chr3    1432902        1551345  NM_001289081         CNTN6
12   chr8   48456320       49475201  NM_001080394         SPIDR
13   chr8   48456320       49475201     NM_003350        UBE2V2
14   chr8   48456320       49475201     NM_005195         CEBPD
15   chr8   48456320       49475201     NM_006904         PRKDC
16   chr8   48456320       49475201     NM_182746          MCM4
17   chr8   48456320       49475201     NR_105002  LOC101929268,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   68557771       69011744  NM_001305204      ZFP90
2   chr16   68557771       69011744  NM_001317184       CDH1
3   chr16   68557771       69011744  NM_001317195       CDH3
4   chr16   68557771       69011744     NM_024562     TANGO6
5   chr16   68557771       69011744     NR_106988  MIR7641-2
6    chr4   69137417       69310521  NM_001031732     YTHDC1
7    chr6  162844437      162953669     NM_013988      PARK2
8    chr7  157345873      157461873  NM_001308267     PTPRN2
10   chr7  157345873      157461873     NR_029689   MIR153-2
11   chr9   16772758       16961555     NM_017637       BNC2
12   chr9   30407410       30745527     NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   81643197       81780880  NM_001256430          STON2
1   chr14   81643197       81780880  NM_001278940         GTF2A1
4   chr14   81643197       81780880     NR_003021        SNORA79
5   chr14   81643197       81780880     NR_135252   LOC101928504
6   chr15   52979365       53186339     NM_004498        ONECUT1
8   chr19    9354523        9512718  NM_001079935         OR7E24
9   chr19    9354523        9512718  NM_001172650  ZNF559-ZNF177
10  chr19    9354523        9512718  NM_001172651         ZNF177
11  chr19    9354523        9512718  NM_001202406         ZNF559
15  chr19    9354523        9512718     NM_198535         ZNF699
16   chr5  104421933      104603043     NR_000039        RAB9BP1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   60322499       60515952  NM_001310141     MS4A18
1  chr11   60322499       60515952     NM_031457      MS4A8
2  chr11   60322499       60515952     NR_026946  LINC00301
3  chr15   28566476       28688010     NM_004667      HERC2
4  chr15   28566476       28688010     NR_033351    GOLGA8F
5  chr15   28566476       28688010     NR_033353    GOLGA8G
6  chr15   28566476       28688010     NR_039734  MIR4509-3
7   chr3    1174156        1352298  NM_001289081      CNTN6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245010167      245140341  NM_001143943        EFCAB2
2    chr1  245010167      245140341     NM_004501        HNRNPU
4    chr1  245010167      245140341     NR_111907  LOC101928068
5    chr1  245010167      245140341     NR_132782      SNORA100
6   chr10   67992264       68203322  NM_001127384        CTNNA3
8   chr22   20094536       20542877  NM_001190326         DGCR8
9   chr22   20094536       20542877  NM_001242313      TMEM191B
10  chr22   20094536       20542877  NM_001243537       CCDC188
11  chr22   20094536       20542877  NM_001278639        RANBP1
14  chr22   20094536       20542877     NM_013373        ZDHHC8
15  chr22   20094536       20542877     NM_015672        RIMBP3
16  chr22   20094536       20542877     NM_022727        TRMT2A
17  chr22   20094536       20542877     NM_023004         RTN4R
18  chr22   20094536       20542877     NM_033257        DGCR6L
19  chr22   20094536       20542877     NR_003563       PI4KAP1
20  chr22   20094536       20542877     NR_026919     LINC00896
21  chr22   20094536       20542877     NR_031618       MIR1286
22  chr22   20094536       20542877     NR_038460     LOC284865
23  chr22   20094536       20542877     NR_106874       MIR6816
24  chr22   20094536       20542877     NR_136560       FAM230A
25  chr22   20094536       20542877     NR_136572  LOC101927859
26   chr4   71331702       71466187  NM_001145006          MUC7
28   chr4   71331702       71466187  NM_001286731          AMTN
29   chr4   71331702       71466187     NM_016519          AMBN
31   chr7    4139838        4244735  NM_001079653          SDK1
33   chr8  100686658      100799568     NM_017890        VPS13B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145355267      145524293  NM_001039888      ANKRD34A
1    chr1  145355267      145524293  NM_001184795        PEX11B
2    chr1  145355267      145524293  NM_001277444         NBPF9
3    chr1  145355267      145524293  NM_001278267        NBPF20
4    chr1  145355267      145524293  NM_001302371        NBPF10
5    chr1  145355267      145524293  NM_001313972         TXNIP
7    chr1  145355267      145524293     NM_005105         RBM8A
9    chr1  145355267      145524293     NM_032305       POLR3GL
10   chr1  145355267      145524293     NM_145277          HFE2
11   chr1  145355267      145524293     NM_153713         LIX1L
12   chr1  145355267      145524293     NR_002328        GNRHR2
16   chr1  145355267      145524293     NR_104217       NBPF25P
17   chr1  145355267      145524293     NR_125967  LOC101928979
18  chr15   28533968       28997137  NM_001282468       GOLGA8M
19  chr15   28533968       28997137     NM_004667         HERC2
20  chr15   28533968       28997137     NR_026589       WHAMMP2
21  chr15   28533968       28997137     NR_033351       GOLGA8F
23  chr15   28533968       28997137     NR_033353       GOLGA8G
25  chr15   28533968       28997137     NR_036443       HERC2P9
26  chr15   28533968       28997137     NR_039734     MIR4509-3
28  chr21   22361653       22514590     NM_004540         NCAM2
29   chr3    4069483        4415152  NM_001164675         SUMF1
30   chr3    4069483        4415152  NM_001243723        SETMAR
32   chr4  125325336      125677451  NM_001167882       ANKRD50
34   chr4  125325336      125677451     NR_110838  LOC101927087
35   chr4  190432533      190679196     NR_121679     LINC01262
36   chr4  190432533      190679196     NR_135513  LOC105379514
37   chr9   11964944       12950523     NM_000550         TYRP1
38   chr9   11964944       12950523     NM_203403       LURAP1L
39   chr9   11964944       12950523     NR_125775   LURAP1L-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr19   47859515       47965908  NM_001009813      MEIS3
3  chr19   47859515       47965908     NM_014681      DHX34
4  chr19   47859515       47965908     NM_015063     SLC8A2
5   chr9   43051285       43470404  NM_001012419  ANKRD20A3
6   chr9   43051285       43470404  NM_001012421  ANKRD20A2
7   chr9   43051285       43470404     NR_027472  LOC642929,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   47771666       47965905  NM_001113498     MDGA2
3   chr3   60190088       61028181  NM_001320899      FHIT
4   chr3   60190088       61028181     NR_128708  MIR548BB
5   chr6  162538939      162873915     NM_013988     PARK2,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1  187100456      188395734     NR_126347  LINC01036
1  chr1  187100456      188395734     NR_132374  LINC01037
2  chr5   18995033       20406229  NM_001291956      CDH18
5  chr7  110536030      110881699  NM_001099658      LRRN3
6  chr7  110536030      110881699  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21480309       21634317  NM_001077180        METTL9
2   chr16   21480309       21634317     NR_002594      SLC7A5P2
3   chr16   21480309       21634317     NR_027155        SMG1P3
4   chr16   21480309       21634317     NR_049833     MIR3680-2
5   chr16   21480309       21634317     NR_110930  LOC101927814
6    chr2   47121414       47313792  NM_001171506         MCFD2
9    chr2   47121414       47313792  NM_001288951         TTC7A
11  chr21   22397913       22519004     NM_004540         NCAM2
12   chr9   74715073       75310752  NM_001102420        ZFAND5
13   chr9   74715073       75310752  NM_001242505           GDA
16   chr9   74715073       75310752     NM_138691          TMC1
17   chr9   74715073       75310752     NR_110952     LINC01504,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   60272460       60373729  NM_001278320    MS4A13
1  chr11   60272460       60373729     NM_017716    MS4A12,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  120592304      120846402     NM_003750      EIF3A
1   chr10  120592304      120846402     NM_199461     NANOS1
2   chr10  120592304      120846402     NR_002917    SNORA19
3   chr11  104571474      104963780  NM_001007232     CARD17
4   chr11  104571474      104963780     NM_001225      CASP4
5   chr11  104571474      104963780  NM_001257119      CASP1
7   chr11  104571474      104963780     NM_052889     CARD16
8   chr11  104571474      104963780     NR_024239      CASP5
9   chr11  104571474      104963780     NR_034064     CASP12
10  chr11  104571474      104963780     NR_034078  LOC643733
11  chr11  104571474      104963780     NR_131905    CASP1P2
12  chr15   28617331       28719340     NR_033351    GOLGA8F
13  chr15   28617331       28719340     NR_033353    GOLGA8G
14  chr15   28617331       28719340     NR_039734  MIR4509-3
15   chr6  116535154      116791595  NM_001276460     FAM26F
16   chr6  116535154      116791595  NM_001322939        DSE
19   chr6  116535154      116791595     NM_003309     TSPYL1
20   chr6  116535154      116791595     NM_021648     TSPYL4
21   chr6  116535154      116791595     NM_152729     NT5DC1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   88999336       89480583  NM_001178118        MINPP1
1   chr10   88999336       89480583     NM_004670        PAPSS2
3   chr10   88999336       89480583     NR_024397    NUTM2A-AS1
4   chr10   88999336       89480583     NR_029408     LINC00863
5   chr10   88999336       89480583     NR_039825       MIR4678
6   chr10   88999336       89480583     NR_046091     LINC00864
7   chr10   88999336       89480583     NR_075100        NUTM2D
9    chr6   90263971       90552880  NM_001137667      CASP8AP2
10   chr6   90263971       90552880  NM_001242809        ANKRD6
13   chr6   90263971       90552880     NM_014611          MDN1
14   chr6   90263971       90552880     NM_020466         LYRM2
16   chr6   90263971       90552880     NR_111915  LOC101929057,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1    2771344        3170920     NM_080431     ACTRT2
1    chr1    2771344        3170920     NM_199454     PRDM16
2    chr1    2771344        3170920     NR_015440  LINC00982
4    chr1    2771344        3170920     NR_036215    MIR4251
5   chr13   25251772       25353875  NM_001184993      RNF17
6   chr13   25251772       25353875  NM_001185085     ATP12A
7   chr21   17903907       18135686     NR_027790   MIR99AHG
9   chr21   17903907       18135686     NR_029480   MIRLET7C
10  chr21   17903907       18135686     NR_029514     MIR99A
11  chr21   17903907       18135686     NR_029694   MIR125B2
20   chr6   94338750       94714109     NR_015362       TSG1
21   chr7  157358717      157561371  NM_001308267     PTPRN2
23   chr7  157358717      157561371     NR_029689   MIR153-2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  135260805      135522050     NM_000773     CYP2E1
1   chr10  135260805      135522050  NM_001080998      FRG2B
2   chr10  135260805      135522050  NM_001143763      SYCE1
5   chr10  135260805      135522050     NR_002934     SCART1
6   chr10  135260805      135522050     NR_033789     SPRNP1
7    chr3    1716833        3128029  NM_001206955      CNTN4
10   chr3    1716833        3128029     NM_175726      IL5RA
11   chr3    1716833        3128029     NR_046554  CNTN4-AS1
12   chr3    1716833        3128029     NR_046555  CNTN4-AS2
13   chr6  162881667      163399959  NM_001080378      PACRG
15   chr6  162881667      163399959     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10  135256625      135389875     NM_000773       CYP2E1
1   chr10  135256625      135389875  NM_001143763        SYCE1
4   chr10  135256625      135389875     NR_002934       SCART1
5   chr10  135256625      135389875     NR_033789       SPRNP1
6    chr9   11590201       13146442     NM_000550        TYRP1
7    chr9   11590201       13146442  NM_001261407         MPDZ
9    chr9   11590201       13146442     NM_203403      LURAP1L
10   chr9   11590201       13146442     NR_125775  LURAP1L-AS1
11   chr9   11590201       13146442     NR_132976     SNORD137,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143153582      144064458  NM_001123068       PPIAL4G
1    chr1  143153582      144064458  NM_001287385        FAM72C
2    chr1  143153582      144064458  NM_001345942        FAM72D
6    chr1  143153582      144064458     NR_104014     LINC01138
7    chr1  143153582      144064458     NR_106967       MIR6077
8    chr1  143153582      144064458     NR_110761  LOC102723769
9    chr1  143153582      144064458     NR_111930  LOC100132057
11  chr20    2939823        3850699     NM_000490           AVP
12  chr20    2939823        3850699     NM_000915           OXT
13  chr20    2939823        3850699  NM_001009984     C20orf194
14  chr20    2939823        3850699  NM_001039140      C20orf27
15  chr20    2939823        3850699  NM_001174089       SLC4A11
17  chr20    2939823        3850699  NM_001197327       HSPA12B
18  chr20    2939823        3850699  NM_001206491          MAVS
19  chr20    2939823        3850699  NM_001207047          ATRN
20  chr20    2939823        3850699  NM_001267584         UBOX5
21  chr20    2939823        3850699  NM_001267623          ITPA
22  chr20    2939823        3850699  NM_001282447        ADAM33
23  chr20    2939823        3850699  NM_001282533         LZTS3
24  chr20    2939823        3850699  NM_001287516        CDC25B
30  chr20    2939823        3850699     NM_001810         CENPB
31  chr20    2939823        3850699     NM_002836         PTPRA
32  chr20    2939823        3850699     NM_015417         SPEF1
33  chr20    2939823        3850699     NM_018347         AP5S1
34  chr20    2939823        3850699     NM_021826       FASTKD5
35  chr20    2939823        3850699     NM_022139         GFRA4
36  chr20    2939823        3850699     NM_023068       SIGLEC1
37  chr20    2939823        3850699     NM_023935        DDRGK1
38  chr20    2939823        3850699     NM_030811        MRPS26
43  chr20    2939823        3850699     NM_178332         GNRH2
44  chr20    2939823        3850699     NR_038395     UBOX5-AS1
47  chr20    2939823        3850699     NR_109859  LOC101929125,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12849939       13775164  NM_001009611    PRAMEF4
1    chr1   12849939       13775164  NM_001010889    PRAMEF6
3    chr1   12849939       13775164  NM_001010890    PRAMEF9
4    chr1   12849939       13775164  NM_001012276    PRAMEF8
7    chr1   12849939       13775164  NM_001013407    PRAMEF5
9    chr1   12849939       13775164  NM_001013631   HNRNPCL1
10   chr1   12849939       13775164  NM_001024661   PRAMEF14
12   chr1   12849939       13775164  NM_001039361   PRAMEF10
14   chr1   12849939       13775164  NM_001098376   PRAMEF15
16   chr1   12849939       13775164  NM_001099790   PRAMEF19
18   chr1   12849939       13775164  NM_001099850   PRAMEF18
20   chr1   12849939       13775164  NM_001099851   PRAMEF17
22   chr1   12849939       13775164  NM_001099852   PRAMEF20
24   chr1   12849939       13775164  NM_001100631   PRAMEF22
26   chr1   12849939       13775164  NM_001136561   HNRNPCL2
27   chr1   12849939       13775164  NM_001146181   HNRNPCL3
28   chr1   12849939       13775164  NM_001146344   PRAMEF11
29   chr1   12849939       13775164  NM_001291381  PRAMEF33P
31   chr1   12849939       13775164  NM_001294139    PRAMEF1
32   chr1   12849939       13775164  NM_001300891   PRAMEF27
35   chr1   12849939       13775164  NM_001302551   HNRNPCL4
36   chr1   12849939       13775164  NM_001306072   PRAMEF26
37   chr1   12849939       13775164  NM_001310134   PRAMEF25
39   chr1   12849939       13775164     NM_023014    PRAMEF2
40   chr1   12849939       13775164     NR_111945  PRAMEF36P
42  chr16   68576187       68726071  NM_001305204      ZFP90
44  chr16   68576187       68726071  NM_001317195       CDH3
45   chr6  162869815      163080798     NM_013988      PARK2
46   chr8  135607708      135724740  NM_001174158       ZFAT
48   chr8  135607708      135724740     NR_002438   ZFAT-AS1
49   chr9   39116449       39841780  NM_001085452  SPATA31A1
50   chr9   39116449       39841780     NM_033655    CNTNAP3
51   chr9   39116449       39841780     NR_003528    ZNF658B
52   chr9   39116449       39841780     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  130282199      131599998  NM_001190971        PIWIL1
1   chr12  130282199      131599998  NM_001300796           RAN
3   chr12  130282199      131599998     NM_007197         FZD10
4   chr12  130282199      131599998     NM_015347        RIMBP2
5   chr12  130282199      131599998     NM_133448      TMEM132D
6   chr12  130282199      131599998     NM_194356          STX2
7   chr12  130282199      131599998     NM_198827        ADGRD1
8   chr12  130282199      131599998     NR_024457  LOC100190940
9   chr12  130282199      131599998     NR_033834     FZD10-AS1
10  chr12  130282199      131599998     NR_131950        LACAT8
11   chr4   93275710       93708572     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67309139       67765348     NM_000695       ALDH3B2
1   chr11   67309139       67765348     NM_000852         GSTP1
3   chr11   67309139       67765348  NM_001166102        NDUFV1
4   chr11   67309139       67765348  NM_001243750         NUDT8
5   chr11   67309139       67765348     NM_005995         TBX10
6   chr11   67309139       67765348     NM_030930       UNC93B1
7   chr11   67309139       67765348     NM_080658          ACY3
9   chr11   67309139       67765348     NR_024249      FAM86C2P
10  chr11   67309139       67765348     NR_033791        DOC2GP
11  chr11   67309139       67765348     NR_130935      C11orf72
12  chr13   54697080       54875090     NR_108062     LINC00458
14   chr3   60368688       60498347  NM_001320899          FHIT
15   chr9   41902683       42029284     NR_003670        FGF7P3
16   chr9   41902683       42029284     NR_015363         GLIDR
19   chr9   41902683       42029284     NR_126048  LOC102724238
20   chr9   41902683       42029284     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30296518       31639627  NM_001039841     ARHGAP11B
1   chr15   30296518       31639627  NM_001146094          FAN1
3   chr15   30296518       31639627  NM_001243538     LOC283710
4   chr15   30296518       31639627  NM_001252020         TRPM1
7   chr15   30296518       31639627  NM_001282472       GOLGA8J
8   chr15   30296518       31639627  NM_001282484       GOLGA8R
9   chr15   30296518       31639627  NM_001282490       GOLGA8H
10  chr15   30296518       31639627  NM_001302461         KLF13
13  chr15   30296518       31639627     NM_017762        MTMR10
14  chr15   30296518       31639627     NM_139320      CHRFAM7A
15  chr15   30296518       31639627     NR_026771  DKFZP434L187
16  chr15   30296518       31639627     NR_026858        ULK4P1
17  chr15   30296518       31639627     NR_026859        ULK4P3
18  chr15   30296518       31639627     NR_029624        MIR211
19  chr15   30296518       31639627     NR_033933       GOLGA8T
20  chr15   30296518       31639627     NR_038253  LOC100288637
22  chr15   30296518       31639627     NR_072991      HERC2P10
23  chr15   30296518       31639627     NR_135834  LOC102725022
24   chr3   17352685       17521770  NM_001134381        TBC1D5
26   chr8    8407748        8589157     NM_194284        CLDN23,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67182695       67295432  NM_001018070    CORO1B
1   chr11   67182695       67295432  NM_001078650   TMEM134
2   chr11   67182695       67295432  NM_001166222    CARNS1
3   chr11   67182695       67295432  NM_001300895     CABP4
5   chr11   67182695       67295432  NM_001302959       AIP
6   chr11   67182695       67295432  NM_001318496     CABP2
7   chr11   67182695       67295432     NM_003952   RPS6KB2
9   chr11   67182695       67295432     NM_004910   PITPNM1
10  chr11   67182695       67295432     NM_005608   PTPRCAP
11  chr11   67182695       67295432     NM_005851   CDK2AP2
14  chr11   67182695       67295432     NM_206997    GPR152
16  chr11   67182695       67295432     NR_106810   MIR6752
17   chr7   64134698       64920966  NM_001007253    ERV3-1
18   chr7   64134698       64920966  NM_001160183    ZNF138
19   chr7   64134698       64920966  NM_001282360    ZNF107
20   chr7   64134698       64920966  NM_001287532     ZNF92
21   chr7   64134698       64920966     NM_015852    ZNF117
22   chr7   64134698       64920966     NM_021148    ZNF273
23   chr7   64134698       64920966     NR_033416    CCT6P3
26   chr7   64134698       64920966     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82375072       82564924  NM_001297704        ADGRL2
2   chr15   28645121       28773800     NR_033351       GOLGA8F
3   chr15   28645121       28773800     NR_033353       GOLGA8G
4   chr15   28645121       28773800     NR_039734     MIR4509-3
6    chr2  186220193      187011349     NM_173651         FSIP2
7    chr2  186220193      187011349     NR_110214  LOC101927196
10   chr2  186220193      187011349     NR_110218     LINC01473
11   chr2  186220193      187011349     NR_144453     FSIP2-AS1
13   chr3   60328511       60429452  NM_001320899          FHIT
14   chr3  197227681      197348498     NM_203314          BDH1
16   chr3  197227681      197348498     NR_003266     LOC220729
17   chr7   64062480       64208587  NM_001282360        ZNF107
18   chr7   64062480       64208587     NR_077227  LOC100128885
20   chr7   64062480       64208587     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   68540581       69388525  NM_001039690         CHTF8
2   chr16   68540581       69388525  NM_001199280          HAS3
3   chr16   68540581       69388525  NM_001199434          NIP7
4   chr16   68540581       69388525  NM_001305204         ZFP90
6   chr16   68540581       69388525  NM_001317184          CDH1
7   chr16   68540581       69388525  NM_001317195          CDH3
9   chr16   68540581       69388525     NM_006750         SNTB2
10  chr16   68540581       69388525     NM_013245         VPS4A
11  chr16   68540581       69388525     NM_022341           PDF
12  chr16   68540581       69388525     NM_024562        TANGO6
13  chr16   68540581       69388525     NM_032382          COG8
14  chr16   68540581       69388525     NM_032830          UTP4
16  chr16   68540581       69388525     NM_144676         TMED6
17  chr16   68540581       69388525     NR_106988     MIR7641-2
18  chr22   19911548       21163380     NM_000185      SERPIND1
19  chr22   19911548       21163380     NM_000754          COMT
22  chr22   19911548       21163380  NM_001190326         DGCR8
23  chr22   19911548       21163380  NM_001242313      TMEM191B
24  chr22   19911548       21163380  NM_001243537       CCDC188
25  chr22   19911548       21163380  NM_001256523         ZNF74
26  chr22   19911548       21163380  NM_001278639        RANBP1
29  chr22   19911548       21163380  NM_001282512        TXNRD2
30  chr22   19911548       21163380  NM_001283116        TANGO2
31  chr22   19911548       21163380  NM_001293236         MED15
35  chr22   19911548       21163380     NM_001670         ARVCF
38  chr22   19911548       21163380     NM_013373        ZDHHC8
39  chr22   19911548       21163380     NM_015672        RIMBP3
40  chr22   19911548       21163380     NM_022727        TRMT2A
41  chr22   19911548       21163380     NM_023004         RTN4R
42  chr22   19911548       21163380     NM_033257        DGCR6L
43  chr22   19911548       21163380     NM_058004         PI4KA
44  chr22   19911548       21163380     NM_153334        SCARF2
45  chr22   19911548       21163380     NR_003563       PI4KAP1
46  chr22   19911548       21163380     NR_024592     POM121L4P
47  chr22   19911548       21163380     NR_026815      TMEM191A
48  chr22   19911548       21163380     NR_026919     LINC00896
49  chr22   19911548       21163380     NR_029706        MIR185
50  chr22   19911548       21163380     NR_031618       MIR1286
51  chr22   19911548       21163380     NR_031706       MIR1306
52  chr22   19911548       21163380     NR_033825        KLHL22
53  chr22   19911548       21163380     NR_037412       MIR3618
54  chr22   19911548       21163380     NR_038460     LOC284865
55  chr22   19911548       21163380     NR_039918       MIR4761
56  chr22   19911548       21163380     NR_106874       MIR6816
57  chr22   19911548       21163380     NR_136560       FAM230A
58  chr22   19911548       21163380     NR_136569     LOC729461
59  chr22   19911548       21163380     NR_136572  LOC101927859
60   chr5     134409         264717  NM_001080478       LRRC14B
61   chr5     134409         264717     NM_004168          SDHA
62   chr5     134409         264717     NM_052909      PLEKHG4B
63   chr5     134409         264717     NM_145265       CCDC127,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   19594511       19951503  NM_001142308    MALRD1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   78968733       79131031     NM_000959       PTGFR
1    chr1   78968733       79131031     NM_006417       IFI44
2    chr1   78968733       79131031     NM_006820      IFI44L
4   chr14   78312094       78456654  NM_001142545       ADCK1
5   chr15   28420830       28549509     NM_004667       HERC2
6   chr15   82735830       82844821  NM_001164465   GOLGA6L10
7   chr15   82735830       82844821  NM_001291420    GOLGA6L9
8   chr15   82735830       82844821     NR_026811   GOLGA2P10
9   chr15   82735830       82844821     NR_111943       RPS17
11  chr15   82735830       82844821     NR_111962  GOLGA6L17P
12   chr7  145994360      146121348     NM_014141     CNTNAP2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   47854001       48211755  NM_001113498     MDGA2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   14690033       14826542  NM_001134477          PARN
1   chr16   14690033       14826542  NM_001277323        NPIPA3
2   chr16   14690033       14826542  NM_001277324        NPIPA2
3   chr16   14690033       14826542     NM_016561          BFAR
4   chr16   14690033       14826542     NR_133651       PLA2G10
5   chr17   14196469       14895179     NM_006041      HS3ST3B1
6   chr17   14196469       14895179     NR_026880      MGC12916
7    chr6  162781845      164629735  NM_001080378         PACRG
9    chr6  162781845      164629735     NM_006775           QKI
10   chr6  162781845      164629735     NM_013988         PARK2
11   chr6  162781845      164629735     NR_028390     PACRG-AS1
12   chr6  162781845      164629735     NR_033862  DKFZp451B082
13   chr6  162781845      164629735     NR_037593          CAHM
14   chr6  162781845      164629735     NR_110871     PACRG-AS2
16   chr6  162781845      164629735     NR_122120     PACRG-AS3
17   chr6  162781845      164629735     NR_134620  LOC102724152
18   chr7   24252169       24367380     NM_000905           NPY
19   chr9    9803386        9924203     NM_002839         PTPRD
20   chr9    9803386        9924203     NR_135135  LOC105375972,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143141647      143290394     NR_110761  LOC102723769
1   chr12   72594326       73471781     NM_013381         TRHDE
2   chr12   72594326       73471781     NR_026836     TRHDE-AS1
4    chr7   75767235       75896804  NM_001110199         SRRM3
5    chr8   22983795       23242325  NM_001136108        R3HCC1
6    chr8   22983795       23242325  NM_001317899         CHMP7
7    chr8   22983795       23242325     NM_002318         LOXL2
8    chr8   22983795       23242325     NM_003840     TNFRSF10D
9    chr8   22983795       23242325     NM_003844     TNFRSF10A
11   chr8   22983795       23242325     NR_033928     LOC389641
12   chr8   22983795       23242325     NR_038323  LOC100507156,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr3     371931         647810  NM_001253387       CHL1
2  chr3     371931         647810     NR_110118  LINC01266
3  chr3     371931         647810     NR_110739   CHL1-AS1
4  chr4   69168440       69311908  NM_001031732     YTHDC1
5  chr7  110414564      110652668  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name               gene_name
0   chr14   67494169       67989724  NM_001256550                    MPP5
1   chr14   67494169       67989724     NM_004094                  EIF2S1
2   chr14   67494169       67989724     NM_015994                 ATP6V1D
3   chr14   67494169       67989724     NM_016445                   PLEK2
4   chr14   67494169       67989724     NM_020806                    GPHN
5   chr14   67494169       67989724     NM_173526                  FAM71D
6   chr14   67494169       67989724     NM_182526                TMEM229B
7   chr14   67494169       67989724     NR_049879                 MIR5694
8    chr6  155472852      155782241  NM_001001346                  CLDN20
9    chr6  155472852      155782241  NM_001010927                   TIAM2
11   chr6  155472852      155782241     NM_015718                    NOX3
12   chr6  155472852      155782241     NM_016020                   TFB1M
13   chr7   75881234       77413367  NM_001102594                    DTX2
15   chr7   75881234       77413367  NM_001110199                   SRRM3
16   chr7   75881234       77413367  NM_001110354                     ZP3
17   chr7   75881234       77413367  NM_001131008                  PTPN12
18   chr7   75881234       77413367     NM_001540                   HSPB1
20   chr7   75881234       77413367     NM_006682                    FGL2
22   chr7   75881234       77413367     NM_012479                   YWHAG
23   chr7   75881234       77413367     NM_017439                    GSAP
24   chr7   75881234       77413367     NM_020879                 CCDC146
25   chr7   75881234       77413367     NM_030570                   UPK3B
26   chr7   75881234       77413367     NM_080744                   SSC4D
27   chr7   75881234       77413367     NM_152992                  POMZP3
28   chr7   75881234       77413367     NM_198467                  RSBN1L
29   chr7   75881234       77413367     NR_003262                  FDPSP2
30   chr7   75881234       77413367     NR_023383  DTX2P1-UPK3BP1-PMS2P11
31   chr7   75881234       77413367     NR_028058                  PMS2P9
32   chr7   75881234       77413367     NR_029411            LOC100133091
33   chr7   75881234       77413367     NR_038361                    APTR
34   chr7   75881234       77413367     NR_110073            LOC101927243,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   21749626       21911762  NM_001161683       OTOA
1   chr16   21749626       21911762  NM_001310148     NPIPB4
4   chr16   21749626       21911762     NR_003370     RRN3P1
5   chr17    5578476        5690603     NR_040000  LOC339166
6    chr2   75867719       76017300  NM_001201334      GCFC2
9    chr2   75867719       76017300     NM_014763     MRPL19
10   chr7  146043455      146274347     NM_014141    CNTNAP2
11   chr9   28585326       28711780  NM_001258282     LINGO2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10    5116931        5226014  NM_001253908    AKR1C3
3  chr10    5116931        5226014     NR_027916   AKR1C8P
4  chr10  134048177      134154421  NM_001143757    LRRC27
7  chr10  134048177      134154421  NM_001318878    STK32C,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  237537699      237740605     NM_001035      RYR2
1   chr1  237537699      237740605     NR_039626   MIR4428
2  chr16   76397962       76587093  NM_001322181   CNTNAP4
4   chr6  116527217      116632190  NM_001322940       DSE
5   chr6  116527217      116632190     NM_003309    TSPYL1
6   chr6  116527217      116632190     NM_021648    TSPYL4
7   chr6  116527217      116632190     NM_152729    NT5DC1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   41647331       41792803  NM_001164595        PDZRN4
1   chr16   21485145       21940567  NM_001077180        METTL9
2   chr16   21485145       21940567  NM_001161683          OTOA
4   chr16   21485145       21940567  NM_001310148        NPIPB4
5   chr16   21485145       21940567     NM_005849         IGSF6
8   chr16   21485145       21940567     NR_002594      SLC7A5P2
9   chr16   21485145       21940567     NR_003370        RRN3P1
10  chr16   21485145       21940567     NR_027155        SMG1P3
11  chr16   21485145       21940567     NR_049833     MIR3680-2
12  chr16   21485145       21940567     NR_110930  LOC101927814
13   chr2  236676208      236881214  NM_001244888         AGAP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   54200531       54489440     NR_120641     LINC01468
2   chr16   71098870       71474211  NM_001099642         CMTR2
3   chr16   71098870       71474211  NM_001198542         HYDIN
9   chr16   71098870       71474211     NM_001740         CALB2
12   chr2   97208219       97402550  NM_001115016        KANSL3
13   chr2   97208219       97402550  NM_001293083        FER1L5
14   chr2   97208219       97402550  NM_001319085        ARID5A
16   chr2   97208219       97402550  NM_001322354        LMAN2L
19  chr21   22396273       23321498     NM_004540         NCAM2
20  chr21   22396273       23321498     NR_038872     LINC00317
21  chr21   22396273       23321498     NR_109958     LINC01425
22   chr4  188362756      188561519     NR_038931     LOC339975
23   chr4  188362756      188561519     NR_110436  LOC100506272
24   chr7  111294883      111399499     NM_014705         DOCK4,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  143479863      143683270     NR_106967   MIR6077
1  chr1  245002498      245109736  NM_001312871     COX20
3  chr1  245002498      245109736     NM_004501    HNRNPU
5  chr1  245002498      245109736     NR_132782  SNORA100
6  chr9   39049656       39337373     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1   12805002       13003009  NM_001009611        PRAMEF4
1    chr1   12805002       13003009  NM_001010889        PRAMEF6
2    chr1   12805002       13003009  NM_001010890        PRAMEF9
3    chr1   12805002       13003009  NM_001012276        PRAMEF8
4    chr1   12805002       13003009  NM_001013631       HNRNPCL1
5    chr1   12805002       13003009  NM_001080830       PRAMEF12
6    chr1   12805002       13003009  NM_001146181       HNRNPCL3
7    chr1   12805002       13003009  NM_001146344       PRAMEF11
8    chr1   12805002       13003009  NM_001294139        PRAMEF1
9    chr1   12805002       13003009  NM_001302551       HNRNPCL4
11   chr1   12805002       13003009     NM_023014        PRAMEF2
12   chr1   12805002       13003009     NM_152290       C1orf158
13  chr11   31374114       31909938     NM_000280           PAX6
17  chr11   31374114       31909938  NM_001304274         IMMP1L
21  chr11   31374114       31909938     NM_019040           ELP4
22  chr11   31374114       31909938     NM_181706        DNAJC24
23  chr11   31374114       31909938     NM_181807          DCDC1
24  chr11   31374114       31909938     NR_033971  DKFZp686K1684
25  chr11   31374114       31909938     NR_117094         PAUPAR
26   chr3    3890679        4630800  NM_001164675          SUMF1
27   chr3    3890679        4630800  NM_001168272          ITPR1
28   chr3    3890679        4630800  NM_001243723         SETMAR
30   chr3    3890679        4630800  NM_001324189          LRRN1
31   chr3    3890679        4630800     NR_108075      ITPR1-AS1
32   chr7   75872450       75972586  NM_001110199          SRRM3
33   chr7   75872450       75972586     NM_001540          HSPB1
34   chr7   75872450       75972586     NM_012479          YWHAG,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr3     787908         969317     NR_110118     LINC01266
1   chr4     129330        1427852     NM_000203          IDUA
2   chr4     129330        1427852     NM_000283         PDE6B
3   chr4     129330        1427852  NM_001004356        FGFRL1
5   chr4     129330        1427852  NM_001039127        ZNF718
6   chr4     129330        1427852  NM_001128325         SPON2
7   chr4     129330        1427852  NM_001131034        RNF212
8   chr4     129330        1427852  NM_001137608        ZNF732
12  chr4     129330        1427852  NM_001289053          PIGG
15  chr4     129330        1427852  NM_001290079        NKX1-1
16  chr4     129330        1427852  NM_001294341         MFSD7
17  chr4     129330        1427852  NM_001297423       TMEM175
18  chr4     129330        1427852  NM_001297432          MAEA
20  chr4     129330        1427852  NM_001317836         PCGF3
21  chr4     129330        1427852  NM_001317934         UVSSA
23  chr4     129330        1427852  NM_001318134           GAK
24  chr4     129330        1427852     NM_001328         CTBP1
25  chr4     129330        1427852     NM_001347          DGKQ
26  chr4     129330        1427852     NM_002477          MYL5
27  chr4     129330        1427852     NM_003441        ZNF141
28  chr4     129330        1427852     NM_006651         CPLX1
29  chr4     129330        1427852     NM_007100         ATP5I
33  chr4     129330        1427852     NM_022042       SLC26A1
34  chr4     129330        1427852     NM_133474        ZNF721
36  chr4     129330        1427852     NM_175918        CRIPAK
37  chr4     129330        1427852     NR_002451       ABCA11P
38  chr4     129330        1427852     NR_024569  LOC100130872
39  chr4     129330        1427852     NR_027481       ZNF876P
40  chr4     129330        1427852     NR_030297        MIR571
41  chr4     129330        1427852     NR_033339     CTBP1-AS2
42  chr4     129330        1427852     NR_033768       TMED11P
43  chr4     129330        1427852     NR_036511  LOC100129917
44  chr4     129330        1427852     NR_104331      CTBP1-AS
49  chr4     129330        1427852     NR_134676  LOC105374344,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81426914       81553981  NM_001278495      NUTM2B
1   chr10   81426914       81553981     NR_027512     BEND3P3
2   chr10   81426914       81553981     NR_120611  NUTM2B-AS1
4   chr16   15418434       15565352  NM_001128423      MPV17L
5   chr16   15418434       15565352  NM_001277325      NPIPA5
6   chr16   15418434       15565352     NM_033201    C16orf45
7    chr2  110182625      110537202  NM_001099289      SH3RF3
8    chr2  110182625      110537202  NM_001321504      SEPT10
10   chr2  110182625      110537202     NM_023016      SOWAHC
11   chr8     510390         834926  NM_001303100      ERICH1
12   chr8     510390         834926  NM_001346810      DLGAP2
14   chr8     510390         834926     NR_073397  ERICH1-AS1
15   chr8     510390         834926     NR_134292   LOC401442
16   chr9   28196131       28357423  NM_001258282      LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83964052       84091256  NM_001142699          DLG2
4   chr17   64509099       64618964     NM_002737         PRKCA
5   chr19   47771737       48110474  NM_001009813         MEIS3
6   chr19   47771737       48110474  NM_001271749         C5AR2
8   chr19   47771737       48110474  NM_001277075        ZNF541
9   chr19   47771737       48110474  NM_001291296          KPTN
12  chr19   47771737       48110474     NM_001736         C5AR1
13  chr19   47771737       48110474     NM_014681         DHX34
14  chr19   47771737       48110474     NM_015063        SLC8A2
15  chr19   47771737       48110474     NM_015603         CCDC9
17  chr19   47771737       48110474     NM_178511        INAFM1
19  chr19   47771737       48110474     NR_038452      NAPA-AS1
20  chr19   47771737       48110474     NR_038457          NAPA
21   chr6  140399477      140593808     NR_037441       MIR3668
22   chr6  140399477      140593808     NR_121622  LOC100507477
23   chr6  162801174      162912509     NM_013988         PARK2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  102410102      102814897     NR_110211         OLFM3
1  chr3    4204762        4851672  NM_001164675         SUMF1
2  chr3    4204762        4851672  NM_001168272         ITPR1
3  chr3    4204762        4851672  NM_001243723        SETMAR
5  chr3    4204762        4851672     NR_004428          EGOT
6  chr3    4204762        4851672     NR_108075     ITPR1-AS1
7  chr7  132760992      132861190  NM_001317178        CHCHD3
9  chr7  132760992      132861190     NR_133931  LOC105375512,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   79538841       79959993  NM_001272020         NRXN3
3  chr14   79538841       79959993     NR_135159  LOC105370586
4  chr18     765039        1610969  NM_001099733       ADCYAP1
6  chr18     765039        1610969     NM_005433          YES1
7  chr18     765039        1610969     NR_023927     LINC00470
8   chr2   52896134       53807010     NR_039630       MIR4431
9   chr7   71504140       71906486  NM_001017440         CALN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   87097488       87685240     NR_135090  LOC105369423
1    chr2   51173273       51602158  NM_001330079         NRXN1
4    chr2   51173273       51602158     NR_135237     LOC730100
5   chr21   36038254       36519501  NM_001001890         RUNX1
7   chr21   36038254       36519501  NM_001317009         CLIC6
9   chr21   36038254       36519501     NR_024351     LINC00160
10  chr21   36038254       36519501     NR_026812     RUNX1-IT1
11  chr21   36038254       36519501     NR_038885     LINC01426
13   chr7   24248244       24407602     NM_000905           NPY,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11  132014790      132178876  NM_001048209        NTM
3  chr11  132014790      132178876     NR_046820     NTM-IT
4   chr3   65836185       65953217  NM_001033057      MAGI1
6   chr3   65836185       65953217     NR_046575  MAGI1-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   58807776       58918523     NM_000236       LIPC
1  chr15   58807776       58918523     NM_001110     ADAM10
2   chr3     605335         743018     NR_110118  LINC01266
3   chr7   64093241       64359903  NM_001160183     ZNF138
4   chr7   64093241       64359903  NM_001282360     ZNF107
7   chr7   64093241       64359903     NR_106898    MIR6839
8   chr7  110588366      110690593  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  132195734      132307751  NM_001012393      OPCML
1   chr11  132195734      132307751  NM_001048209        NTM
5    chr3  101112752      101238797  NM_001282803      SENP7
7    chr3  101112752      101238797     NR_036433   FAM172BP
8    chr4   69264121       69371791     NM_014058  TMPRSS11E
9    chr4   93258409       93398874     NM_001510      GRID2
10   chr5   23860254       23997975     NR_131245    C5orf17
11   chr7   16743764       16849823  NM_001159767       BZW2
12   chr7   16743764       16849823     NM_006408       AGR2
13   chr7   16743764       16849823     NM_014399    TSPAN13
14   chr7  110626509      110733883  NM_001099658      LRRN3
15   chr7  110626509      110733883  NM_001244606     IMMP2L
17   chr9     310567         566740  NM_001190458      DOCK8
18   chr9     310567         566740  NM_001256876      KANK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63088785       63257074     NR_047029     LINC00448
1   chr15   20251709       22936165  NM_001001413      GOLGA6L1
2   chr15   20251709       22936165  NM_001004719         OR4M2
3   chr15   20251709       22936165  NM_001005241         OR4N4
4   chr15   20251709       22936165  NM_001102610       TUBGCP5
5   chr15   20251709       22936165  NM_001145004      GOLGA6L6
6   chr15   20251709       22936165  NM_001271664     GOLGA6L22
7   chr15   20251709       22936165  NM_001277303        POTEB2
8   chr15   20251709       22936165  NM_001277304         POTEB
9   chr15   20251709       22936165  NM_001324119        CYFIP1
13  chr15   20251709       22936165     NM_207355        POTEB3
15  chr15   20251709       22936165     NR_015416     LOC727924
16  chr15   20251709       22936165     NR_024387       CXADRP2
17  chr15   20251709       22936165     NR_027053     LOC646214
18  chr15   20251709       22936165     NR_027407      GOLGA8DP
19  chr15   20251709       22936165     NR_027411      GOLGA8CP
20  chr15   20251709       22936165     NR_027992        NBEAP1
21  chr15   20251709       22936165     NR_028067        OR4N3P
22  chr15   20251709       22936165     NR_028506         NF1P2
24  chr15   20251709       22936165     NR_031672      MIR1268A
25  chr15   20251709       22936165     NR_033735        REREP3
26  chr15   20251709       22936165     NR_036062     MIR3118-2
27  chr15   20251709       22936165     NR_036063     MIR3118-3
28  chr15   20251709       22936165     NR_036432       HERC2P3
29  chr15   20251709       22936165     NR_038836       CHEK2P2
30  chr15   20251709       22936165     NR_039734     MIR4509-3
31  chr15   20251709       22936165     NR_040094     LINC01193
32  chr15   20251709       22936165     NR_049895     MIR5701-2
33  chr15   20251709       22936165     NR_110480  LOC101927079
37  chr15   20251709       22936165     NR_128721     MIR5701-3
38  chr15   20251709       22936165     NR_135666   IGHV1OR15-3
39  chr15   20251709       22936165     NR_135694   IGHV1OR15-1
40   chr2  129436121      129651447     NR_110278  LOC101927881
41   chr3    4011725        4637852  NM_001164675         SUMF1
42   chr3    4011725        4637852  NM_001168272         ITPR1
43   chr3    4011725        4637852  NM_001243723        SETMAR
45   chr3    4011725        4637852     NR_108075     ITPR1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21543577       21675904  NM_001077180        METTL9
2   chr16   21543577       21675904     NM_005849         IGSF6
3   chr16   21543577       21675904     NR_110930  LOC101927814
4   chr18   63313429       63431678  NM_001317214          CDH7
7    chr4    9022427       10320949     NM_000798          DRD5
8    chr4    9022427       10320949  NM_001001290        SLC2A9
9    chr4    9022427       10320949  NM_001040448       DEFB131
10   chr4    9022427       10320949  NM_001242326      USP17L25
18   chr4    9022427       10320949  NM_001256852      USP17L10
19   chr4    9022427       10320949  NM_001256853      USP17L12
21   chr4    9022427       10320949  NM_001256854      USP17L11
24   chr4    9022427       10320949  NM_001256855      USP17L13
25   chr4    9022427       10320949  NM_001256857      USP17L17
26   chr4    9022427       10320949  NM_001256860      USP17L19
27   chr4    9022427       10320949  NM_001256861      USP17L20
28   chr4    9022427       10320949  NM_001256894      USP17L15
29   chr4    9022427       10320949     NM_005112          WDR1
31   chr4    9022427       10320949     NR_027279      USP17L6P
32   chr4    9022427       10320949     NR_031688      MIR548I2
33   chr4    9022427       10320949     NR_036090       MIR3138
34   chr4    9022427       10320949     NR_046416      USP17L9P,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   87661065       88178327  NM_001290053  LOC101927844
1   chr1   87661065       88178327     NM_006769          LMO4
2   chr1   87661065       88178327     NR_038324     LINC01364
3  chr14   78395199       79126856  NM_001142545         ADCK1
4  chr14   78395199       79126856     NM_004796         NRXN3
6  chr18   35102795       35204062     NM_020180         CELF4
7   chr2   50838185       51111039  NM_001330082         NRXN1
8   chr2   50838185       51111039     NR_130470       MIR8485,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr15   43781813       43900062  NM_001141979     TP53BP1
1   chr15   43781813       43900062  NM_001190214     PPIP5K1
2   chr15   43781813       43900062     NM_002373       MAP1A
5   chr15   43781813       43900062     NM_020990      CKMT1B
6   chr15   43781813       43900062     NM_153700        STRC
8   chr17   48364213       48469979  NM_001166131        EME1
9   chr17   48364213       48469979     NM_016504      MRPL27
10  chr17   48364213       48469979     NM_018509      LRRC59
11  chr17   48364213       48469979     NM_022167       XYLT2
12  chr17   48364213       48469979     NR_125805  TMEM92-AS1
13   chr5    3591880        3971817     NM_024337        IRX1
14   chr7    6810910        6940002  NM_001099697    RSPH10B2
15   chr7    6810910        6940002     NM_198097       CCZ1B
16   chr9    9457834        9722104     NM_002839       PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  185888485      186049507     NM_031935         HMCN1
1   chr20   14726278       14875859     NM_080676       MACROD2
2   chr20   14726278       14875859     NR_037841   MACROD2-AS1
3    chr5  117421596      117610214     NR_104997  LOC102467224
4    chr7   64111935       64886012  NM_001007253        ERV3-1
5    chr7   64111935       64886012  NM_001160183        ZNF138
6    chr7   64111935       64886012  NM_001282360        ZNF107
7    chr7   64111935       64886012  NM_001287532         ZNF92
8    chr7   64111935       64886012     NM_015852        ZNF117
9    chr7   64111935       64886012     NM_021148        ZNF273
10   chr7   64111935       64886012     NR_033416        CCT6P3
13   chr7   64111935       64886012     NR_106898       MIR6839
14   chr9   39081487       39200716     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   21018632       21881289  NM_001277303        POTEB2
1   chr15   21018632       21881289     NM_207355        POTEB3
2   chr15   21018632       21881289     NR_028506         NF1P2
3   chr15   21018632       21881289     NR_036062     MIR3118-2
4   chr15   21018632       21881289     NR_040094     LINC01193
5   chr15   21018632       21881289     NR_049895     MIR5701-2
7    chr3  156097444      156199110  NM_001308217        KCNAB1
12   chr3  156097444      156199110     NR_046618    KCNAB1-AS1
13   chr5   19644069       20001061  NM_001291956         CDH18
16   chr9    9767010       11153472     NM_002839         PTPRD
17   chr9    9767010       11153472     NR_110696     PTPRD-AS2
18   chr9    9767010       11153472     NR_135135  LOC105375972,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  241506028      241639861  NM_001282773          RGS7
1   chr2   50765090       50892316  NM_001330082         NRXN1
2   chr2   52327861       52769291     NR_135237     LOC730100
3   chr2   52327861       52769291     NR_135239  LOC105374596
4  chr20   14710671       14853704     NM_080676       MACROD2
5   chr6  162658753      162760125     NM_013988         PARK2, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   12779624       12926625  NM_001013631      HNRNPCL1
1   chr1   12779624       12926625  NM_001080830      PRAMEF12
2   chr1   12779624       12926625  NM_001103170       AADACL3
3   chr1   12779624       12926625  NM_001146181      HNRNPCL3
4   chr1   12779624       12926625  NM_001146344      PRAMEF11
5   chr1   12779624       12926625  NM_001294139       PRAMEF1
6   chr1   12779624       12926625  NM_001302551      HNRNPCL4
8   chr1   12779624       12926625     NM_023014       PRAMEF2
9   chr1   12779624       12926625     NM_152290      C1orf158
10  chr1  244993030      245140042  NM_001143943        EFCAB2
12  chr1  244993030      245140042  NM_001312871         COX20
14  chr1  244993030      245140042     NM_004501        HNRNPU
17  chr1  244993030      245140042     NR_111907  LOC101928068
18  chr1  244993030      245140042     NR_132782      SNORA100
19  chr2  133659450      133790897     NM_207363        NCKAP5
20  chr2  133659450      133790897     NR_135572  LOC101928185
21  chr2  233100925      233261456  NM_001257281        DIS3L2
22  chr2  233100925      233261456     NM_001632          ALPP
24  chr2  233100925      233261456     NR_028501       ECEL1P2
25  chr4   30707354       30809120  NM_001173523         PCDH7
28  chr5   17745885       17982629     NR_134286     LOC646241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   83972941       85045200     NM_052910       SLITRK1
1   chr13   83972941       85045200     NR_046871     LINC00333
2   chr15   28695122       28813202     NR_033351       GOLGA8F
3   chr15   28695122       28813202     NR_033353       GOLGA8G
4   chr15   28695122       28813202     NR_039734     MIR4509-3
5   chr16    6766824        6899236  NM_001142334        RBFOX1
8   chr17   47850631       48054018  NM_001077503          TAC4
9   chr17   47850631       48054018  NM_001199158          KAT7
10  chr17   47850631       48054018  NM_001242791      FLJ45513
11  chr17   47850631       48054018     NM_001934          DLX4
13   chr2   81598738       81808203     NR_110161  LOC100507201
14   chr4  165908656      166009377  NM_001100389       TMEM192
15   chr4  165908656      166009377     NM_152620        TRIM60
16   chr4  169247105      170041293  NM_001012967        DDX60L
17   chr4  169247105      170041293  NM_001166108         PALLD
21   chr4  169247105      170041293     NM_020870        SH3RF1
22   chr4  169247105      170041293     NM_032783          CBR4
23   chr9    5950815        6463036  NM_001001874       TPD52L3
24   chr9    5950815        6463036  NM_001017969      KIAA2026
25   chr9    5950815        6463036  NM_001199641          IL33
26   chr9    5950815        6463036  NM_001243202        RANBP6
30   chr9    5950815        6463036     NM_152896         UHRF2
31   chr9    5950815        6463036     NR_039811       MIR4665,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11    7594819        7726135  NM_001256568     PPFIBP2
2   chr11    7594819        7726135  NM_001302826      CYB5R2
6   chr11    7594819        7726135     NM_198185       OVCH2
7    chr5  110349018      111104093  NM_001142475        NREP
15   chr5  110349018      111104093  NM_001308058      STARD4
16   chr5  110349018      111104093  NM_001323374       CAMK4
21   chr5  110349018      111104093     NM_033035        TSLP
24   chr5  110349018      111104093     NM_139281       WDR36
25   chr5  110349018      111104093     NR_040093  STARD4-AS1
27   chr6  154042902      154356266  NM_001145279       OPRM1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3   60063421       60270345  NM_001320899      FHIT
2  chr7  110476552      110682541  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr15   20687473       21497754  NM_001145004     GOLGA6L6
1   chr15   20687473       21497754  NM_001277303       POTEB2
2   chr15   20687473       21497754     NM_207355       POTEB3
3   chr15   20687473       21497754     NR_027411     GOLGA8CP
4   chr15   20687473       21497754     NR_027992       NBEAP1
5   chr15   20687473       21497754     NR_028506        NF1P2
6   chr15   20687473       21497754     NR_036062    MIR3118-2
7   chr15   20687473       21497754     NR_036432      HERC2P3
8   chr15   20687473       21497754     NR_040094    LINC01193
9   chr15   20687473       21497754     NR_049895    MIR5701-2
11  chr17   70988195       71091744     NM_139177     SLC39A11
12  chr20   14682414       15121995     NM_080676      MACROD2
13  chr20   14682414       15121995     NR_037841  MACROD2-AS1
15   chr7   88945517       89118797     NM_181646      ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21422157       21588025     NM_130464        NPIPB3
1   chr16   21422157       21588025     NR_002594      SLC7A5P2
2   chr16   21422157       21588025     NR_024456  LOC100190986
3   chr16   21422157       21588025     NR_027155        SMG1P3
4   chr16   21422157       21588025     NR_049833     MIR3680-2
5    chr2   50894373       52077680  NM_001330079         NRXN1
8    chr2   50894373       52077680     NR_130470       MIR8485
9    chr2   50894373       52077680     NR_135237     LOC730100
10   chr6  162644023      162923898     NM_013988         PARK2,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr9   30337655       30464166  NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   31183454       31285307     NM_181807      DCDC1
1   chr15   21171433       21285685     NR_040094  LINC01193
2   chr15   28803793       28904869     NR_036443    HERC2P9
3    chr5  104132601      104622307     NR_000039    RAB9BP1
4    chr7   64113584       64368651  NM_001160183     ZNF138
5    chr7   64113584       64368651  NM_001282360     ZNF107
6    chr7   64113584       64368651     NM_021148     ZNF273
9    chr7   64113584       64368651     NR_106898    MIR6839
10   chr7  110654846      110783882  NM_001099658      LRRN3
11   chr7  110654846      110783882  NM_001244606     IMMP2L, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   41927454       43110761  NM_001346175         LRFN5
1   chr19      85930         197955  NM_001005240        OR4F17
2   chr19      85930         197955     NR_028324     LINC01002
3   chr22   15763435       16274133  NM_001136213         POTEH
4   chr22   15763435       16274133     NR_073459       BMS1P18
5   chr22   15763435       16274133     NR_122113        DUXAP8
6   chr22   15763435       16274133     NR_132385     LINC01297
7   chr22   15763435       16274133     NR_133911       BMS1P22
8    chr6  101439483      101980744     NM_021956         GRIK2
9    chr6  162803865      162941290     NM_013988         PARK2
10   chr7   64037709       64507278  NM_001007253        ERV3-1
11   chr7   64037709       64507278  NM_001160183        ZNF138
12   chr7   64037709       64507278  NM_001282360        ZNF107
13   chr7   64037709       64507278     NM_015852        ZNF117
14   chr7   64037709       64507278     NM_021148        ZNF273
15   chr7   64037709       64507278     NR_033245     LOC641746
16   chr7   64037709       64507278     NR_033416        CCT6P3
18   chr7   64037709       64507278     NR_077227  LOC100128885
20   chr7   64037709       64507278     NR_106898       MIR6839
21   chr7  110574440      111014021  NM_001099658         LRRN3
22   chr7  110574440      111014021  NM_001244606        IMMP2L
24   chr9   39040537       39230641     NM_033655       CNTNAP3
25   chr9   41844106       41975964     NR_003670        FGF7P3
26   chr9   41844106       41975964     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68126905       68233360  NM_001127384        CTNNA3
2   chr13   54790096       54955500     NR_031628       MIR1297
3   chr16   68552661       68715382  NM_001305204         ZFP90
5   chr16   68552661       68715382  NM_001317195          CDH3
6    chr5  110355697      110560435  NM_001323374         CAMK4
10   chr5  110355697      110560435     NM_033035          TSLP
12   chr5  110355697      110560435     NM_139281         WDR36
14   chr7  124980968      125117303     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr10  134079714      134241492  NM_001098637          PWWP2B
1   chr10  134079714      134241492  NM_001143757          LRRC27
4   chr10  134079714      134241492  NM_001318878          STK32C
11  chr14   75182479       75718471  NM_001040108            MLH3
12  chr14   75182479       75718471  NM_001080408           PROX2
13  chr14   75182479       75718471  NM_001207012             PGF
14  chr14   75182479       75718471  NM_001244883            DLST
15  chr14   75182479       75718471  NM_001318508            FCF1
16  chr14   75182479       75718471  NM_001329237            NEK9
18  chr14   75182479       75718471     NM_006827          TMED10
19  chr14   75182479       75718471     NM_014239          EIF2B2
21  chr14   75182479       75718471     NM_019589           YLPM1
22  chr14   75182479       75718471     NM_031464         RPS6KL1
23  chr14   75182479       75718471     NR_110315         ZC2HC1C
24  chr14   75182479       75718471     NR_126394           ACYP1
26  chr15   28577437       28708884     NR_033351         GOLGA8F
27  chr15   28577437       28708884     NR_033353         GOLGA8G
28  chr15   28577437       28708884     NR_039734       MIR4509-3
29  chr15   43752175       44140355  NM_001018108           SERF2
30  chr15   43752175       44140355  NM_001141979         TP53BP1
31  chr15   43752175       44140355  NM_001167941           WDR76
32  chr15   43752175       44140355  NM_001190214         PPIP5K1
36  chr15   43752175       44140355  NM_001199885            HYPK
37  chr15   43752175       44140355  NM_001258031         SERINC4
38  chr15   43752175       44140355  NM_001282309        CATSPER2
39  chr15   43752175       44140355  NM_001321927          CKMT1A
42  chr15   43752175       44140355     NM_002373           MAP1A
43  chr15   43752175       44140355     NM_005313           PDIA3
45  chr15   43752175       44140355     NM_005926           MFAP1
47  chr15   43752175       44140355     NM_020990          CKMT1B
48  chr15   43752175       44140355     NM_025165            ELL3
49  chr15   43752175       44140355     NM_153700            STRC
51  chr15   43752175       44140355     NR_002318      CATSPER2P1
52  chr15   43752175       44140355     NR_031695         MIR1282
53  chr15   43752175       44140355     NR_037673  SERF2-C15ORF63
57   chr7    6651102        6869214  NM_001099697        RSPH10B2
58   chr7    6651102        6869214  NM_001278559          ZNF316
59   chr7    6651102        6869214     NM_006956           ZNF12
60   chr7    6651102        6869214     NM_017560          ZNF853
61   chr7    6651102        6869214     NM_198097           CCZ1B
62   chr7    6651102        6869214     NR_002217          PMS2CL,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr3     618183        1961292  NM_001289081      CNTN6
1  chr3     618183        1961292     NR_110118  LINC01266
2  chr4  136823742      136973457     NR_103763  LINC00613,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81458283       82426731     NM_000429         MAT1A
1   chr10   81458283       82426731  NM_001012973         PLAC9
2   chr10   81458283       82426731  NM_001128309       TSPAN14
3   chr10   81458283       82426731  NM_001145719        SH2D4B
4   chr10   81458283       82426731  NM_001243778       FAM213A
7   chr10   81458283       82426731  NM_001269053         DYDC1
8   chr10   81458283       82426731  NM_001270041         DYDC2
10  chr10   81458283       82426731  NM_001270367       TMEM254
13  chr10   81458283       82426731  NM_001278407        ANXA11
15  chr10   81458283       82426731  NM_001278495        NUTM2B
17  chr10   81458283       82426731     NM_003019         SFTPD
20  chr10   81458283       82426731     NR_002724         MBL1P
21  chr10   81458283       82426731     NR_027431   TMEM254-AS1
22  chr10   81458283       82426731     NR_029407     LOC642361
23  chr10   81458283       82426731     NR_033857       BMS1P21
24  chr10   81458283       82426731     NR_038464     LINC00857
25  chr10   81458283       82426731     NR_120611    NUTM2B-AS1
28  chr10   81458283       82426731     NR_120661  LOC101929574
29  chr10   81458283       82426731     NR_120662  LOC102723703
30  chr10   81458283       82426731     NR_136612  LOC100130698
32  chr12   97965874       98283753     NR_077240     LOC643711
34  chr15   30228272       30363590  NM_001301025          TJP1
35   chr5   31256806       31421694     NM_004932          CDH6
36   chr5   31256806       31421694     NM_013235        DROSHA
37   chr7    3757752        5995088  NM_001033518         WIPI2
39   chr7    3757752        5995088  NM_001037165         FOXK1
40   chr7    3757752        5995088  NM_001040661       SLC29A4
41   chr7    3757752        5995088  NM_001079653          SDK1
42   chr7    3757752        5995088  NM_001080495        TNRC18
43   chr7    3757752        5995088  NM_001097622           OCM
44   chr7    3757752        5995088  NM_001099697      RSPH10B2
45   chr7    3757752        5995088  NM_001100600          MMD2
46   chr7    3757752        5995088     NM_001101          ACTB
47   chr7    3757752        5995088  NM_001204456          RBAK
48   chr7    3757752        5995088  NM_001204513   RBAK-RBAKDN
49   chr7    3757752        5995088  NM_001321213        FBXL18
50   chr7    3757752        5995088     NM_003088         FSCN1
51   chr7    3757752        5995088     NM_014855         AP5Z1
52   chr7    3757752        5995088     NM_015622          CCZ1
53   chr7    3757752        5995088     NM_018059         RADIL
54   chr7    3757752        5995088     NM_020144        PAPOLB
58   chr7    3757752        5995088     NM_207116        RNF216
59   chr7    3757752        5995088     NR_015343        RBAKDN
60   chr7    3757752        5995088     NR_015449      RNF216P1
61   chr7    3757752        5995088     NR_023382       ZNF815P
62   chr7    3757752        5995088     NR_030318        MIR589
63   chr7    3757752        5995088     NR_034163       ZNF890P
64   chr7    3757752        5995088     NR_039800       MIR4656
65   chr7    3757752        5995088     NR_046834    RNF216-IT1
67   chr7    3757752        5995088     NR_106934       MIR6874
68   chr7    3757752        5995088     NR_126168     LOC221946,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr4   71403472       72060168     NM_000788       DCK
1   chr4   71403472       72060168  NM_001037442     RUFY3
2   chr4   71403472       72060168  NM_001098477     GRSF1
3   chr4   71403472       72060168  NM_001098484    SLC4A4
5   chr4   71403472       72060168  NM_001244766     MOB1B
11  chr4   71403472       72060168     NM_016519      AMBN
12  chr4   71403472       72060168     NM_020368      UTP3
13  chr4   71403472       72060168     NM_031889      ENAM
14  chr4   71403472       72060168     NM_144646    JCHAIN
15  chr9   17177128       17290708  NM_001114395     CNTLN,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr19   23817098       23930728     NM_138286     ZNF681
1   chr19   23817098       23930728     NM_138330     ZNF675
2    chr2   50780458       52118247  NM_001330079      NRXN1
5    chr2   50780458       52118247     NR_130470    MIR8485
6    chr2   50780458       52118247     NR_135237  LOC730100
7    chr3    2250736        2442540  NM_001206955      CNTN4
9    chr4  169201035      169301976  NM_001012967     DDX60L
10   chr4  169201035      169301976     NM_017631      DDX60,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  143575751      143677526     NR_106967        MIR6077
1   chr11   60324185       60505278  NM_001310141         MS4A18
2   chr11   60324185       60505278     NM_031457          MS4A8
3   chr11   60324185       60505278     NR_026946      LINC00301
4   chr15   36213623       36320056     NR_039735        MIR4510
5    chr3  162861728      162983262     NR_033945      LINC01192
6    chr4   16214244       16325614     NM_153365          TAPT1
7    chr4   16214244       16325614     NR_027696      TAPT1-AS1
8    chr5  167339344      170761530  NM_001034837         KCNIP1
10   chr5  167339344      170761530  NM_001080428          TENM2
11   chr5  167339344      170761530  NM_001102609        C5orf58
13   chr5  167339344      170761530  NM_001129891        FAM196B
14   chr5  167339344      170761530  NM_001161661           WWC1
15   chr5  167339344      170761530  NM_001271946          SLIT3
16   chr5  167339344      170761530  NM_001291985          GABRP
18   chr5  167339344      170761530  NM_001329641          SPDL1
19   chr5  167339344      170761530     NM_002887           RARS
20   chr5  167339344      170761530     NM_004137         KCNMB1
21   chr5  167339344      170761530     NM_004946          DOCK2
22   chr5  167339344      170761530     NM_005565           LCP2
23   chr5  167339344      170761530     NM_012188          FOXI1
25   chr5  167339344      170761530     NM_021025           TLX3
26   chr5  167339344      170761530     NM_022897        RANBP17
27   chr5  167339344      170761530     NM_024594          PANK3
28   chr5  167339344      170761530     NR_024356          FBLL1
29   chr5  167339344      170761530     NR_026945      LINC01366
30   chr5  167339344      170761530     NR_029520       MIR103A1
31   chr5  167339344      170761530     NR_029632       MIR218-2
32   chr5  167339344      170761530     NR_030311         MIR585
33   chr5  167339344      170761530     NR_031721       MIR103B1
34   chr5  167339344      170761530     NR_039609        MIR378E
35   chr5  167339344      170761530     NR_108022      LINC01187
36   chr5  167339344      170761530     NR_109894   CTB-178M22.2
37   chr5  167339344      170761530     NR_109897      LOC728095
38   chr5  167339344      170761530     NR_109899  CTD-2270F17.1
39   chr5  167339344      170761530     NR_130737   LOC101927969
41   chr5  167339344      170761530     NR_136214   LOC105377716
42   chr7   12240878       12366905  NM_001134232       TMEM106B,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   12842844       12945034  NM_001009611     PRAMEF4
1    chr1   12842844       12945034  NM_001013631    HNRNPCL1
2    chr1   12842844       12945034  NM_001146181    HNRNPCL3
3    chr1   12842844       12945034  NM_001146344    PRAMEF11
4    chr1   12842844       12945034  NM_001294139     PRAMEF1
5    chr1   12842844       12945034  NM_001302551    HNRNPCL4
7    chr1   12842844       12945034     NM_023014     PRAMEF2
8   chr10   88928694       89059620  NM_001099338      NUTM2A
9   chr10   88928694       89059620  NM_001330112      FAM35A
11  chr10   88928694       89059620     NR_024397  NUTM2A-AS1
12   chr6  116545720      116647512  NM_001322940         DSE
13   chr6  116545720      116647512     NM_003309      TSPYL1
14   chr6  116545720      116647512     NM_021648      TSPYL4
15   chr6  116545720      116647512     NM_152729      NT5DC1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245006275      245108502  NM_001312871         COX20
2    chr1  245006275      245108502     NM_004501        HNRNPU
4    chr1  245006275      245108502     NR_132782      SNORA100
5   chr15   28579129       28692653     NR_033351       GOLGA8F
6   chr15   28579129       28692653     NR_033353       GOLGA8G
7   chr15   28579129       28692653     NR_039734     MIR4509-3
8   chr16   22255502       22384181  NM_001258033        POLR3E
9   chr16   22255502       22384181     NM_001802          CDR2
10  chr16   22255502       22384181     NM_013302         EEF2K
11  chr19    1856894        2196784  NM_001031735        IZUMO4
12  chr19    1856894        2196784  NM_001130111       ABHD17A
13  chr19    1856894        2196784     NM_001319       CSNK1G2
14  chr19    1856894        2196784  NM_001329539        SCAMP4
15  chr19    1856894        2196784     NM_003938         AP3D1
16  chr19    1856894        2196784     NM_017572         MKNK2
17  chr19    1856894        2196784     NM_017797         BTBD2
18  chr19    1856894        2196784     NM_031918         KLF16
19  chr19    1856894        2196784     NM_032482         DOT1L
20  chr19    1856894        2196784     NM_130807         MOB3A
21  chr19    1856894        2196784     NM_138422         ADAT3
22  chr19    1856894        2196784     NR_033400   CSNK1G2-AS1
23  chr22   17197337       17367939     NM_175878          XKR3
24  chr22   17197337       17367939     NR_003607       HSFY1P1
25  chr22   17197337       17367939     NR_134584  LOC101929350
26   chr6  162625374      162772185     NM_013988         PARK2
27   chr8   15945833       16964714     NM_002445          MSR1
28   chr8   15945833       16964714     NM_019851         FGF20
30   chr8   15945833       16964714     NM_181723         MICU3
31   chr9   67025845       67314112     NR_002817        AQP7P1
32   chr9   67025845       67314112     NR_046175     LOC286297
33   chr9   67025845       67314112     NR_135597  LOC101928195
34   chr9   67025845       67314112     NR_136299  LOC101929583
35   chr9   67025845       67314112     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   31450349       31569093     NM_032849         MEDAG
1   chr13   31450349       31569093     NM_152325         TEX26
2   chr13   31450349       31569093     NR_038287     TEX26-AS1
4   chr13   31450349       31569093     NR_103813     LINC00545
5   chr15   30318101       30579260  NM_001282472       GOLGA8J
6   chr15   30318101       30579260     NR_026771  DKFZP434L187
7   chr15   30318101       30579260     NR_026859        ULK4P3
8   chr15   30318101       30579260     NR_033933       GOLGA8T
9   chr19   47769991       48168058  NM_001009813         MEIS3
10  chr19   47769991       48168058  NM_001271749         C5AR2
12  chr19   47769991       48168058  NM_001277075        ZNF541
13  chr19   47769991       48168058  NM_001291296          KPTN
16  chr19   47769991       48168058     NM_001736         C5AR1
17  chr19   47769991       48168058     NM_014681         DHX34
18  chr19   47769991       48168058     NM_015063        SLC8A2
19  chr19   47769991       48168058     NM_015603         CCDC9
20  chr19   47769991       48168058     NM_015711       GLTSCR1
22  chr19   47769991       48168058     NM_178511        INAFM1
24  chr19   47769991       48168058     NR_038452      NAPA-AS1
25  chr19   47769991       48168058     NR_038457          NAPA
26   chr8  100530976      100754281     NM_017890        VPS13B
27   chr8  100530976      100754281     NR_030329        MIR599
28   chr8  100530976      100754281     NR_030596        MIR875,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67988251       68118897  NM_001127384    CTNNA3
2   chr11  132169452      132376376  NM_001012393     OPCML
3   chr11  132169452      132376376  NM_001048209       NTM
8    chr2  167195810      167303558     NM_002976     SCN7A
9    chr2  167195810      167303558     NM_002977     SCN9A
10   chr3  196737904      196964718  NM_001204386      DLG1
13   chr3  196737904      196964718     NM_005929     MELTF,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49133535       49235595  NM_001302082         BEND5
1    chr1   49133535       49235595  NM_001323575         AGBL4
2    chr1  224747459      224875125  NM_001322302         CNIH3
6   chr10   68099875       68413986  NM_001127384        CTNNA3
8    chr6  161976127      162271942     NM_013988         PARK2
9    chr9   41887963       42126876     NR_003670        FGF7P3
10   chr9   41887963       42126876     NR_015363         GLIDR
13   chr9   41887963       42126876     NR_126048  LOC102724238
14   chr9   41887963       42126876     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  189859785      190147502  NM_001317188        BRINP3
2   chr16   29694468       30082648     NM_000034         ALDOA
3   chr16   29694468       30082648  NM_001083613       TMEM219
4   chr16   29694468       30082648  NM_001109659      C16orf92
5   chr16   29694468       30082648  NM_001114099        SEZ6L2
8   chr16   29694468       30082648  NM_001256269         KIF22
10  chr16   29694468       30082648  NM_001256443         PRRT2
11  chr16   29694468       30082648  NM_001276275           MAZ
12  chr16   29694468       30082648  NM_001282062         DOC2A
15  chr16   29694468       30082648  NM_001286585         CDIPT
16  chr16   29694468       30082648  NM_001293204           MVP
17  chr16   29694468       30082648  NM_001304562        INO80E
18  chr16   29694468       30082648  NM_001318249          QPRT
19  chr16   29694468       30082648  NM_001318504        FAM57B
22  chr16   29694468       30082648     NM_003609        HIRIP3
23  chr16   29694468       30082648     NM_004783         TAOK2
26  chr16   29694468       30082648     NM_024516         PAGR1
28  chr16   29694468       30082648     NM_152338          ZG16
29  chr16   29694468       30082648     NM_175900      C16orf54
30  chr16   29694468       30082648     NM_178863        KCTD13
31  chr16   29694468       30082648     NM_181718        ASPHD1
33  chr16   29694468       30082648     NR_015396     CDIPT-AS1
36  chr21   22644628       22901089     NM_004540         NCAM2
37   chr4   69227272       69737355     NM_001075       UGT2B10
38   chr4   69227272       69737355     NM_001076       UGT2B15
39   chr4   69227272       69737355     NM_001077       UGT2B17
40   chr4   69227272       69737355     NM_014058     TMPRSS11E
41   chr7  132735620      132843321  NM_001317178        CHCHD3
43   chr7  132735620      132843321     NR_133931  LOC105375512,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87700878       88143741  NM_001290053  LOC101927844
1    chr1   87700878       88143741     NM_006769          LMO4
2    chr1   87700878       88143741     NR_038324     LINC01364
3   chr12   86220693       86330558     NM_005447        RASSF9
4   chr12   86220693       86330558     NM_006183           NTS
5    chr3  160061493      160205531  NM_001190241         IFT80
7    chr3  160061493      160205531  NM_001288753          SMC4
9    chr3  160061493      160205531     NM_173084        TRIM59
10   chr3  160061493      160205531     NR_029525       MIR16-2
11   chr3  160061493      160205531     NR_029663        MIR15B
12   chr4   98372230       98495572     NM_174952         STPG2
13   chr4   98372230       98495572     NR_102713     STPG2-AS1
14   chr9     447593         559948  NM_001190458         DOCK8
15   chr9     447593         559948  NM_001256876         KANK1,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr11    6751653       10191588     NM_000990        RPL27A
1    chr11    6751653       10191588  NM_001003745        OR10A3
2    chr11    6751653       10191588  NM_001004460        OR10A2
3    chr11    6751653       10191588  NM_001004461        OR10A6
4    chr11    6751653       10191588  NM_001004489        OR2AG1
5    chr11    6751653       10191588  NM_001004490        OR2AG2
6    chr11    6751653       10191588  NM_001004684         OR2D3
7    chr11    6751653       10191588  NM_001135109          RIC3
8    chr11    6751653       10191588  NM_001143976          WEE1
9    chr11    6751653       10191588  NM_001165030       TMEM41B
10   chr11    6751653       10191588  NM_001243254       DENND5A
11   chr11    6751653       10191588  NM_001256568       PPFIBP2
13   chr11    6751653       10191588  NM_001270428          LMO1
14   chr11    6751653       10191588  NM_001282656        ZNF143
15   chr11    6751653       10191588  NM_001286094        TMEM9B
17   chr11    6751653       10191588  NM_001289059         STK33
19   chr11    6751653       10191588  NM_001302826        CYB5R2
21   chr11    6751653       10191588  NM_001330199        SCUBE2
22   chr11    6751653       10191588     NM_003320           TUB
25   chr11    6751653       10191588     NM_003696         OR6A2
26   chr11    6751653       10191588     NM_003700         OR2D2
27   chr11    6751653       10191588     NM_003754         EIF3F
28   chr11    6751653       10191588     NM_005418           ST5
29   chr11    6751653       10191588     NM_006391          IPO7
30   chr11    6751653       10191588     NM_013249        ZNF214
31   chr11    6751653       10191588     NM_013250        ZNF215
32   chr11    6751653       10191588     NM_014469        RBMXL2
33   chr11    6751653       10191588     NM_014818        TRIM66
35   chr11    6751653       10191588     NM_015055        SWAP70
37   chr11    6751653       10191588     NM_020642         AKIP1
..     ...        ...            ...           ...           ...
120  chr19    9373458       10899157     NM_003331          TYK2
122  chr19    9373458       10899157     NM_003755         EIF3G
123  chr19    9373458       10899157     NM_004230         S1PR2
125  chr19    9373458       10899157     NM_007065         CDC37
127  chr19    9373458       10899157     NM_012289         KEAP1
128  chr19    9373458       10899157     NM_015719        COL5A3
129  chr19    9373458       10899157     NM_015725          RDH8
130  chr19    9373458       10899157     NM_015956         MRPL4
131  chr19    9373458       10899157     NM_020230          PPAN
133  chr19    9373458       10899157     NM_023008          KRI1
136  chr19    9373458       10899157     NM_031209         QTRT1
140  chr19    9373458       10899157     NM_133452        RAVER1
143  chr19    9373458       10899157     NM_152476        ZNF560
144  chr19    9373458       10899157     NM_198535        ZNF699
146  chr19    9373458       10899157     NR_003688     SNORD105B
147  chr19    9373458       10899157     NR_004381      SNORD105
148  chr19    9373458       10899157     NR_024333      ILF3-AS1
149  chr19    9373458       10899157     NR_027300          C3P1
150  chr19    9373458       10899157     NR_030368        MIR638
151  chr19    9373458       10899157     NR_031592       MIR1181
152  chr19    9373458       10899157     NR_031603       MIR1238
153  chr19    9373458       10899157     NR_036206       MIR4322
154  chr19    9373458       10899157     NR_038830          PIN1
155  chr19    9373458       10899157     NR_039903       MIR4748
156  chr19    9373458       10899157     NR_049855       MIR5589
157  chr19    9373458       10899157     NR_122038    ZNF561-AS1
158  chr19    9373458       10899157     NR_134920  LOC101928238
159   chr2  216242268      216448257  NM_001306129           FN1
162   chr2  216242268      216448257     NR_110607  LOC102724849
163   chr7  145379307      146053151     NM_014141       CNTNAP2

[126 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143132519      143628074     NR_110761  LOC102723769
1   chr11   20827522       20974086  NM_001288713         NELL1
2    chr7  143054011      143198381  NM_001278297       FAM131B
3    chr7  143054011      143198381  NM_001322263  LOC100507507
4    chr7  143054011      143198381     NM_003461           ZYX
5    chr7  143054011      143198381     NM_005232         EPHA1
7    chr7  143054011      143198381     NM_176883       TAS2R41
8    chr7  143054011      143198381     NM_177437       TAS2R60
9    chr7  143054011      143198381     NR_033897     EPHA1-AS1
10   chr7  143054011      143198381     NR_106952       MIR6892
11   chr9  137568405      137798640     NM_000093        COL5A1
12   chr9  137568405      137798640     NM_002003          FCN1
13   chr9  137568405      137798640     NM_004108          FCN2
14   chr9  137568405      137798640     NR_037460      MIR3689A
15   chr9  137568405      137798640     NR_037469      MIR3689B
16   chr9  137568405      137798640     NR_039691      MIR3689C
17   chr9  137568405      137798640     NR_039693     MIR3689D1
18   chr9  137568405      137798640     NR_039694     MIR3689D2
19   chr9  137568405      137798640     NR_039695      MIR3689E
20   chr9  137568405      137798640     NR_039696      MIR3689F
21   chr9  137568405      137798640     NR_103451  LOC101448202,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  242687673      243018313     NM_152666      PLD5
1  chr12   27064377       27220905  NM_001171887  FGFR1OP2
3  chr12   27064377       27220905  NM_001271811     MED21
4  chr12   27064377       27220905     NM_016551    TM7SF3
5  chr12   27064377       27220905     NM_018164      ASUN,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   72681557       72846961     NM_013381      TRHDE
1   chr15   21172653       21300491     NR_040094  LINC01193
2   chr18   55809479       55930570  NM_001144964     NEDD4L
7    chr7   11047508       12476007  NM_001134232   TMEM106B
8    chr7   11047508       12476007  NM_001135924       VWDE
9    chr7   11047508       12476007     NM_014660      PHF14
10   chr7   11047508       12476007     NM_015204     THSD7A, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49628935       49968825  NM_001323575         AGBL4
1    chr1   49628935       49968825     NR_046839     AGBL4-IT1
2    chr1   49628935       49968825     NR_125988  LOC101929721
3   chr16    8655284        8766243     NM_024109       METTL22
4   chr16   10562443       10764889  NM_001256160       ATF7IP2
5   chr16   10562443       10764889     NM_001424          EMP2
6   chr16   10562443       10764889     NM_144674         TEKT5
8   chr19   24248530       24360942  NM_001278661        ZNF254
11  chr19   24248530       24360942     NR_003603      HAVCR1P1
12   chr3  176608714      176873298  NM_001321193       TBL1XR1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27610554       29002902  NM_001034842        PTCHD3
1   chr10   27610554       29002902  NM_001242702           MKX
2   chr10   27610554       29002902  NM_001256411         RAB18
3   chr10   27610554       29002902  NM_001290020         ARMC4
6   chr10   27610554       29002902     NM_012342         BAMBI
8   chr10   27610554       29002902     NM_100264           WAC
10  chr10   27610554       29002902     NM_173496          MPP7
11  chr10   27610554       29002902     NR_033805       WAC-AS1
12  chr10   27610554       29002902     NR_107053       MIR8086
13  chr10   27610554       29002902     NR_121652       MKX-AS1
14  chr10   27610554       29002902     NR_132973      SNORD130
15  chr10   27610554       29002902     NR_134496  LOC105376468
17  chr10   27610554       29002902     NR_138082       ARMC4P1
18   chr4  136804057      136935373     NR_103762     LINC00613
20   chr7    3261698        3418353     NM_152744          SDK1
21   chr7  110789781      111330826  NM_001244606        IMMP2L
23   chr9   39006912       39631473  NM_001085452     SPATA31A1
24   chr9   39006912       39631473     NM_033655       CNTNAP3
25   chr9   39006912       39631473     NR_003528       ZNF658B
26   chr9   39006912       39631473     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr20   40495538       41341468  NM_133170         PTPRT
1  chr20   40495538       41341468  NR_110004  LOC101927159,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16    6695342        6813968  NM_001308117    RBFOX1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr12   29109853       29311123  NM_001271783       FAR2
1  chr13   86032282       86150362     NR_046989  LINC00351
2  chr16   15438826       15540502  NM_001128423     MPV17L
3  chr16   15438826       15540502  NM_001277325     NPIPA5
4  chr16   15438826       15540502     NM_033201   C16orf45,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   19573664       19710097  NM_001142308     MALRD1
1  chr16   72554627       72660320     NR_126330  LINC01572
2   chr6  162700104      162912749     NM_013988      PARK2
3   chr7    6815433        7045432  NM_001099697   RSPH10B2
4   chr7    6815433        7045432     NM_198097      CCZ1B,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   82882721       83088873     NR_033423    DHFRP3
1  chr9   28655479       29280226  NM_001258282    LINGO2
3  chr9   28655479       29280226     NR_030597    MIR876
4  chr9   28655479       29280226     NR_030618    MIR873,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   90889652       91154407     NR_120414  LINC01049
1  chr16    6674765        6913678  NM_001142334     RBFOX1
4   chr8   50609661       50941684  NM_001287813      SNTG1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   16651259       16766936  NM_001159767      BZW2
1  chr7   16651259       16766936     NM_020319    ANKMY2
2  chr7  110622687      110871682  NM_001099658     LRRN3
3  chr7  110622687      110871682  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr18   63823273       64172115     NM_021153         CDH19
1    chr2  234377342      234683530     NM_000463        UGT1A1
2    chr2  234377342      234683530  NM_001001394        DNAJB3
3    chr2  234377342      234683530     NM_001072        UGT1A6
4    chr2  234377342      234683530     NM_003648          DGKD
5    chr2  234377342      234683530     NM_007120        UGT1A4
6    chr2  234377342      234683530     NM_018218         USP40
7    chr2  234377342      234683530     NM_019075       UGT1A10
8    chr2  234377342      234683530     NM_019076        UGT1A8
9    chr2  234377342      234683530     NM_019077        UGT1A7
10   chr2  234377342      234683530     NM_019078        UGT1A5
11   chr2  234377342      234683530     NM_019093        UGT1A3
12   chr2  234377342      234683530     NM_021027        UGT1A9
15   chr2  234377342      234683530     NR_037694  LOC100286922
16   chr6    4267708        4439318     NR_106988     MIR7641-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   23397137       23538573     NR_107021       MIR8054
1   chr15   42660202       43454390  NM_001130447         HAUS2
2   chr15   42660202       43454390  NM_001284306        ZNF106
5   chr15   42660202       43454390     NM_003825        SNAP23
6   chr15   42660202       43454390     NM_020759        STARD9
7   chr15   42660202       43454390     NM_024956        TMEM62
8   chr15   42660202       43454390     NM_138477         CDAN1
9   chr15   42660202       43454390     NM_153260        LRRC57
10  chr15   42660202       43454390     NM_173087         CAPN3
13  chr15   42660202       43454390     NM_173500         TTBK2
14  chr15   42660202       43454390     NM_174916          UBR1
15  chr19   47827195       47927217  NM_001009813         MEIS3
16  chr19   47827195       47927217  NM_001271749         C5AR2
20  chr19   47827195       47927217     NM_014681         DHX34
22  chr20   14705302       14861800     NM_080676       MACROD2
23  chr20   14881748       15096935     NM_080676       MACROD2
24  chr20   14881748       15096935     NR_037841   MACROD2-AS1
26  chr22   19922173       20463434     NM_000754          COMT
29  chr22   19922173       20463434  NM_001190326         DGCR8
30  chr22   19922173       20463434  NM_001242313      TMEM191B
31  chr22   19922173       20463434  NM_001243537       CCDC188
32  chr22   19922173       20463434  NM_001278639        RANBP1
35  chr22   19922173       20463434  NM_001282512        TXNRD2
36  chr22   19922173       20463434  NM_001283116        TANGO2
39  chr22   19922173       20463434     NM_001670         ARVCF
42  chr22   19922173       20463434     NM_013373        ZDHHC8
43  chr22   19922173       20463434     NM_015672        RIMBP3
44  chr22   19922173       20463434     NM_022727        TRMT2A
45  chr22   19922173       20463434     NM_023004         RTN4R
46  chr22   19922173       20463434     NM_033257        DGCR6L
47  chr22   19922173       20463434     NR_003563       PI4KAP1
48  chr22   19922173       20463434     NR_026919     LINC00896
49  chr22   19922173       20463434     NR_029706        MIR185
50  chr22   19922173       20463434     NR_031618       MIR1286
51  chr22   19922173       20463434     NR_031706       MIR1306
52  chr22   19922173       20463434     NR_037412       MIR3618
53  chr22   19922173       20463434     NR_038460     LOC284865
54  chr22   19922173       20463434     NR_039918       MIR4761
55  chr22   19922173       20463434     NR_106874       MIR6816
56  chr22   19922173       20463434     NR_136560       FAM230A
57  chr22   19922173       20463434     NR_136572  LOC101927859
58   chr6    1802932        2212035  NM_001253846          GMDS
60   chr6    5147126        5621132  NM_001164840         LYRM4
62   chr6    5147126        5621132  NM_001318872         FARS2
65   chr6    5147126        5621132     NR_037462       MIR3691
66   chr6    5147126        5621132     NR_125846  LOC101927972
67   chr6    5147126        5621132     NR_126015     LYRM4-AS1
69   chr9   28229271       28451484  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244964924      245243563  NM_001143943        EFCAB2
2    chr1  244964924      245243563  NM_001312871         COX20
4    chr1  244964924      245243563     NM_004501        HNRNPU
7    chr1  244964924      245243563     NR_111907  LOC101928068
8    chr1  244964924      245243563     NR_132782      SNORA100
9   chr15   28478140       28593548     NM_004667         HERC2
10  chr21   13529774       15086015     NM_174981         POTED
11  chr21   13529774       15086015     NR_026916    ANKRD30BP2
12  chr21   13529774       15086015     NR_036061     MIR3118-1
13  chr21   13529774       15086015     NR_036164     MIR3156-3
14  chr21   13529774       15086015     NR_110544  LOC102724188
15   chr4   69122706       69267379  NM_001031732        YTHDC1,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr2   35350602       35891647  NR_039629  MIR548AD
1  chr6  162684516      162808902  NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   86222366       86322525     NM_005447        RASSF9
1   chr12   86222366       86322525     NM_006183           NTS
2    chr2   51068052       51382163  NM_001330079         NRXN1
5    chr2   51068052       51382163     NR_135237     LOC730100
6   chr21   17906968       18060279     NR_027790      MIR99AHG
8   chr21   17906968       18060279     NR_029480      MIRLET7C
9   chr21   17906968       18060279     NR_029514        MIR99A
10  chr21   17906968       18060279     NR_029694      MIR125B2
19   chr4   69268891       69375284     NM_014058     TMPRSS11E
20   chr5  125605400      125797972  NM_001146319        GRAMD3
22   chr5  125605400      125797972     NR_105039  LOC101927488
23   chr5  161120801      161385071     NM_000806        GABRA1
24   chr5  161120801      161385071     NM_000811        GABRA6
29   chr5  161120801      161385071     NR_126372     LINC01202
30   chr7   64123237       64244378  NM_001282360        ZNF107
32   chr7   64123237       64244378     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   28652693       28954786  NM_001282468    GOLGA8M
1   chr15   28652693       28954786     NR_033351    GOLGA8F
2   chr15   28652693       28954786     NR_033353    GOLGA8G
3   chr15   28652693       28954786     NR_036443    HERC2P9
4   chr15   28652693       28954786     NR_039734  MIR4509-3
6   chr21   40075243       40187854  NM_001256295       ETS2
8   chr21   40075243       40187854     NR_027065  LINC00114
11   chr4      75422         326975  NM_001039127     ZNF718
12   chr4      75422         326975  NM_001137608     ZNF732
13   chr4      75422         326975  NM_001286052     ZNF595
16   chr4      75422         326975     NR_027481    ZNF876P,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   12791995       12898752  NM_001080830   PRAMEF12
1   chr1   12791995       12898752  NM_001146344   PRAMEF11
2   chr1   12791995       12898752  NM_001294139    PRAMEF1
4   chr1   12791995       12898752     NM_152290   C1orf158
5   chr2   75931554       76066804  NM_001201334      GCFC2
8   chr7  110648400      112180533  NM_001099658      LRRN3
9   chr7  110648400      112180533  NM_001134468     LSMEM1
10  chr7  110648400      112180533  NM_001197079      IFRD1
12  chr7  110648400      112180533  NM_001244606     IMMP2L
14  chr7  110648400      112180533     NM_014705      DOCK4
15  chr7  110648400      112180533     NM_021994     ZNF277
18  chr7  110648400      112180533     NR_103806  DOCK4-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr17    1205979        1376017  NM_001080779         MYO1C
2  chr17    1205979        1376017     NM_005206           CRK
3  chr17    1205979        1376017     NM_006761         YWHAE
5   chr2  195552696      195782695     NR_110223  LOC101927431,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   14740875       14966623  NM_001277323        NPIPA3
2   chr16   14740875       14966623  NM_001277324        NPIPA2
4   chr16   14740875       14966623     NM_014287         NOMO1
5   chr16   14740875       14966623     NM_016561          BFAR
6   chr16   14740875       14966623     NR_023387       ABCC6P2
7   chr16   14740875       14966623     NR_133651       PLA2G10
8   chr16   83071686       83345408  NM_001220488         CDH13
10   chr9    2537696        2770091     NM_003383         VLDLR
11   chr9    2537696        2770091     NM_133497         KCNV2
12   chr9    2537696        2770091     NR_015375     VLDLR-AS1
13   chr9   67121201       67383304     NR_002817        AQP7P1
14   chr9   67121201       67383304     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14838597       14979550     NM_080676      MACROD2
1  chr20   14838597       14979550     NR_037841  MACROD2-AS1
3   chr3    2190754        2303055  NM_001206955        CNTN4
5   chr3   60107684       60329824  NM_001320899         FHIT
6   chr7  110533846      110634309  NM_001244606       IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   67935165       68127543  NM_001127384     CTNNA3
2  chr13   63150052       63305754     NR_047029  LINC00448
3   chr4   69161165       69374276  NM_001031732     YTHDC1
4   chr4   69161165       69374276     NM_014058  TMPRSS11E,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr12   17791763       17998000  NR_039770   MIR3974, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  167147012      167977227     NM_002976         SCN7A
1   chr2  167147012      167977227     NM_002977         SCN9A
2   chr2  167147012      167977227     NM_152381         XIRP2
3   chr2  167147012      167977227     NR_110260  LOC101929680
4   chr2  242419572      242542694  NM_001164356         THAP4
5   chr2  242419572      242542694  NM_001271978         STK25
8   chr2  242419572      242542694     NM_014808         FARP2
10  chr2  242419572      242542694     NM_032515           BOK
11  chr2  242419572      242542694     NR_033346       BOK-AS1
12  chr7   80141931       80754004     NM_000072          CD36
20  chr7   80141931       80754004     NM_006379        SEMA3C,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   53092483       54940373     NM_000242          MBL2
1   chr10   53092483       54940373  NM_001098512         PRKG1
3   chr10   53092483       54940373     NM_012242          DKK1
4   chr10   53092483       54940373     NM_015235        CSTF2T
5   chr10   53092483       54940373     NR_038277     PRKG1-AS1
6   chr10   53092483       54940373     NR_120641     LINC01468
8   chr13   63132817       63283122     NR_047029     LINC00448
9   chr15   25780744       25980560     NM_024490        ATP10A
10  chr15   82861648       83148051  NM_001164465     GOLGA6L10
11  chr15   82861648       83148051  NM_001291420      GOLGA6L9
14  chr15   82861648       83148051     NR_004847      UBE2Q2P2
15  chr15   82861648       83148051     NR_026811     GOLGA2P10
17  chr15   82861648       83148051     NR_045529     ADAMTS7P1
18  chr15   82861648       83148051     NR_102747     LOC727751
20  chr15   82861648       83148051     NR_111962    GOLGA6L17P
21  chr15   82861648       83148051     NR_120378  LOC102724034
22  chr16   83049937       83278043  NM_001220488         CDH13
24   chr2   97262355       98131212  NM_001115016        KANSL3
25   chr2   97262355       98131212  NM_001122646       FAM178B
26   chr2   97262355       98131212  NM_001164315       ANKRD36
28   chr2   97262355       98131212  NM_001293083        FER1L5
29   chr2   97262355       98131212  NM_001320849        FAHD2B
30   chr2   97262355       98131212  NM_001322354        LMAN2L
31   chr2   97262355       98131212     NM_016466       ANKRD39
33   chr2   97262355       98131212     NM_017623         CNNM3
34   chr2   97262355       98131212     NM_017789        SEMA4C
35   chr2   97262355       98131212     NM_020184         CNNM4
36   chr2   97262355       98131212     NM_025190      ANKRD36B
38   chr2   97262355       98131212     NM_144994       ANKRD23
40   chr2   97262355       98131212     NR_036074       MIR3127
42   chr2   97262355       98131212     NR_103732  LOC100506076
46   chr2   97262355       98131212     NR_110209  LOC101927053
47   chr2   97262355       98131212     NR_130704  LOC100506123
49   chr4  169234997      169453472  NM_001012967        DDX60L
50   chr4  169234997      169453472  NM_001166108         PALLD
52   chr4  169234997      169453472     NM_017631         DDX60,     chrom  cnv_start  cnv_terminate       tx_name           gene_name
0   chr13   86009932       86266127     NR_046989           LINC00351
1   chr15   28234596       28364166     NM_000275                OCA2
3   chr15   28234596       28364166     NM_004667               HERC2
4   chr15   36181605       36292146     NR_039735             MIR4510
5   chr15   59945193       60166725  NM_001320674               BNIP2
7   chr15   59945193       60166725  NM_001320929              GTF2A2
10   chr2   97530455       97754554  NM_001122646             FAM178B
13   chr2   97530455       97754554     NM_017789              SEMA4C
14   chr2   97530455       97754554     NM_199336              FAHD2B
15   chr2   97530455       97754554     NR_110209        LOC101927053
16   chr2  110203694      110306404  NM_001099289              SH3RF3
17   chr2  110203694      110306404  NM_001321504              SEPT10
19   chr4   93786500       94265699     NM_001510               GRID2
20   chr5   17390577       18406914     NR_134270        LOC102723526
22   chr5   17390577       18406914     NR_134273        LOC101929544
25   chr5   17390577       18406914     NR_134286           LOC646241
27   chr5  104433753      104693284     NR_000039             RAB9BP1
28   chr6  162573305      162977336     NM_013988               PARK2
29   chr9   64534312       67450773  NM_001113541           SPATA31A5
30   chr9   64534312       67450773     NM_015667           SPATA31A7
31   chr9   64534312       67450773     NR_002817              AQP7P1
32   chr9   64534312       67450773     NR_024496  PTGER4P2-CDK2AP2P2
33   chr9   64534312       67450773     NR_026802             FAM74A4
34   chr9   64534312       67450773     NR_026803             FAM74A1
35   chr9   64534312       67450773     NR_046175           LOC286297
36   chr9   64534312       67450773     NR_121570        LOC101928381
37   chr9   64534312       67450773     NR_121647           LINC01410
38   chr9   64534312       67450773     NR_122076           LOC403323
40   chr9   64534312       67450773     NR_126047           LOC728673
42   chr9   64534312       67450773     NR_135128        LOC100132249
43   chr9   64534312       67450773     NR_135597        LOC101928195
44   chr9   64534312       67450773     NR_136299        LOC101929583
45   chr9   64534312       67450773     NR_136300        LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   26993184       27136369     NM_002515         NOVA1
2   chr21   44855491       45162423  NM_001331030          PDXK
4   chr21   44855491       45162423     NM_007031        HSF2BP
5   chr21   44855491       45162423     NM_015056         RRP1B
6   chr21   44855491       45162423     NR_026863     LINC00313
7   chr21   44855491       45162423     NR_026960     LINC00319
8   chr21   44855491       45162423     NR_106718       MIR6070
9   chr21   44855491       45162423     NR_136540  LOC102724354
10   chr4  189388122      190187016     NR_033869     LINC01060
11   chr5   99435334       99723601     NR_027503  LOC100133050,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  244960544      245224036  NM_001143943        EFCAB2
2   chr1  244960544      245224036  NM_001312871         COX20
4   chr1  244960544      245224036     NM_004501        HNRNPU
7   chr1  244960544      245224036     NR_111907  LOC101928068
8   chr1  244960544      245224036     NR_132782      SNORA100
9   chr7   21416267       21518327  NM_001326542           SP4
10  chr7   21416267       21518327     NR_031594       MIR1183,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr3   60350684       60462194  NM_001320899       FHIT
1  chr9   39069792       39395451  NM_001085452  SPATA31A1
2  chr9   39069792       39395451     NM_033655    CNTNAP3
3  chr9   39069792       39395451     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   78271609       78394733  NM_001164637         ENDOV
2   chr17   78271609       78394733  NM_001256071        RNF213
4   chr17   78271609       78394733     NR_029376  LOC100294362
5   chr17   78271609       78394733     NR_039883       MIR4730
6    chr7   17731274       17835875     NM_015132         SNX13
7    chr7   64143533       64358623  NM_001160183        ZNF138
8    chr7   64143533       64358623  NM_001282360        ZNF107
11   chr9  102214050      102371661     NR_109802  LOC101928438,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr9    2496998        2634233  NM_003383      VLDLR
1  chr9    2496998        2634233  NR_015375  VLDLR-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  244997175      245223989  NM_001143943        EFCAB2
2   chr1  244997175      245223989  NM_001312871         COX20
4   chr1  244997175      245223989     NM_004501        HNRNPU
7   chr1  244997175      245223989     NR_111907  LOC101928068
8   chr1  244997175      245223989     NR_132782      SNORA100
9   chr2   35694311       35872204     NR_039629      MIR548AD
10  chr3  193059151      193525087     NM_015560          OPA1
11  chr3  193059151      193525087     NM_032279       ATP13A4
12  chr3  193059151      193525087     NM_198505       ATP13A5
13  chr3  193059151      193525087     NR_046634      OPA1-AS1
14  chr3  193059151      193525087     NR_046726   ATP13A4-AS1
16  chr4    8990209        9218942  NM_001256852      USP17L10
17  chr4    8990209        9218942  NM_001256854      USP17L11
18  chr6  140861242      141209553     NR_039675       MIR4465
19  chr7    6777127        6904353  NM_001099697      RSPH10B2
20  chr7    6777127        6904353     NM_198097         CCZ1B
21  chr7    6777127        6904353     NR_002217        PMS2CL
22  chr9   31265638       31887157     NR_135134     LINC01243,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr18   35140002       35315244  NM_020180     CELF4
1  chr18   35140002       35315244  NR_036202   MIR4318
2   chr6  162636837      162745281  NM_013988     PARK2,    chrom  cnv_start  cnv_terminate       tx_name      gene_name
0  chr19    9405226        9577633  NM_001172650  ZNF559-ZNF177
1  chr19    9405226        9577633  NM_001172651         ZNF177
2  chr19    9405226        9577633  NM_001202406         ZNF559
5  chr19    9405226        9577633  NM_001271314         ZNF266
7  chr19    9405226        9577633     NM_152476         ZNF560
8  chr19    9405226        9577633     NM_198535         ZNF699,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr5   28279812       28427879     NR_134265  LOC105374698
1  chr7   77799279       77908555     NM_012301         MAGI2
2  chr7  110513613      110773833  NM_001099658         LRRN3
3  chr7  110513613      110773833  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27071278       27289753  NM_001080406      C12orf71
1   chr12   27071278       27289753  NM_001171887      FGFR1OP2
3   chr12   27071278       27289753  NM_001271811         MED21
4   chr12   27071278       27289753     NM_016551        TM7SF3
5   chr12   27071278       27289753     NM_018164          ASUN
6   chr13   71733334       72134817     NM_080759         DACH1
7   chr13   71733334       72134817     NR_047699     LINC00348
8   chr15   65428921       66018960  NM_001144823       DENND4A
9   chr15   65428921       66018960  NM_001254740       SLC24A1
12  chr15   65428921       66018960     NM_003613          CILP
14  chr15   65428921       66018960     NM_004884        IGDCC3
15  chr15   65428921       66018960     NM_006660          CLPX
16  chr15   65428921       66018960     NM_016395         HACD3
17  chr15   65428921       66018960     NM_017851        PARP16
18  chr15   65428921       66018960     NM_020962        IGDCC4
19  chr15   65428921       66018960     NR_039736       MIR4511
20  chr15   65428921       66018960     NR_045104          VWA9
22  chr15   65428921       66018960     NR_135485          DPP8
24  chr17   48089769       48294775     NM_000088        COL1A1
25  chr17   48089769       48294775  NM_001199898          PDK2
28  chr17   48089769       48294775  NM_001257359        SAMD14
29  chr17   48089769       48294775     NM_002204         ITGA3
31  chr17   48089769       48294775     NM_032595       PPP1R9B
32  chr17   48089769       48294775     NR_024193         HILS1
33  chr17   48089769       48294775     NR_038230     LOC284080
34  chr17   48089769       48294775     NR_110806  LOC101927230
35  chr17   48089769       48294775     NR_135553          SGCA
36   chr2   84710742       84905652     NM_001370         DNAH6
37   chr4   87974546       88548208  NM_001128310       SPARCL1
38   chr4   87974546       88548208  NM_001166693          AFF1
39   chr4   87974546       88548208  NM_001248011         NUDT9
40   chr4   87974546       88548208  NM_001292003         KLHL8
44   chr4   87974546       88548208     NM_014208          DSPP
45   chr4   87974546       88548208     NM_016245      HSD17B11
46   chr4   87974546       88548208     NM_178135      HSD17B13
48   chr4   87974546       88548208     NR_049891       MIR5705,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  145107103      145315017  NM_001277444      NBPF9
1   chr1  145107103      145315017  NM_001278267     NBPF20
2   chr1  145107103      145315017  NM_001302371     NBPF10
3   chr1  145107103      145315017     NM_004892     SEC22B
4   chr1  145107103      145315017     NM_203458   NOTCH2NL
5   chr1  145107103      145315017     NR_104217    NBPF25P
6   chr2  234389837      234559294     NM_018218      USP40
7   chr2  234389837      234559294     NM_019075    UGT1A10
8   chr2  234389837      234559294     NM_019076     UGT1A8
9   chr7   29528908       29690331  NM_001293069       CHN2
13  chr7   29528908       29690331  NM_001329997      PRR15
16  chr7   29528908       29690331     NR_024278  LOC646762
17  chr9   16749215       16861829     NM_017637       BNC2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr12   85633192       85793460  NM_001079910     LRRIQ1
1  chr12   85633192       85793460     NM_006982       ALX1
2   chr2   82922760       83152995     NR_033423     DHFRP3
3   chr2  110226396      110377082  NM_001099289     SH3RF3
4   chr2  110226396      110377082  NM_001321504     SEPT10
6   chr2  110226396      110377082     NM_023016     SOWAHC
7   chr4  189175821      189638990     NR_033869  LINC01060
8   chr4  189175239      189841680     NR_033869  LINC01060
9   chr5   17705429       17847064     NR_134286  LOC646241,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   87715245       88011750  NM_001290053  LOC101927844
1   chr1   87715245       88011750     NM_006769          LMO4
2   chr1   87715245       88011750     NR_038324     LINC01364
3   chr2   97139511       97739714  NM_001115016        KANSL3
4   chr2   97139511       97739714  NM_001122646       FAM178B
6   chr2   97139511       97739714  NM_001285485        NEURL3
7   chr2   97139511       97739714  NM_001293083        FER1L5
8   chr2   97139511       97739714  NM_001319085        ARID5A
10  chr2   97139511       97739714  NM_001322354        LMAN2L
11  chr2   97139511       97739714     NM_016466       ANKRD39
13  chr2   97139511       97739714     NM_017623         CNNM3
14  chr2   97139511       97739714     NM_017789        SEMA4C
15  chr2   97139511       97739714     NM_020184         CNNM4
17  chr2   97139511       97739714     NM_144994       ANKRD23
18  chr2   97139511       97739714     NR_036074       MIR3127
21  chr2   97139511       97739714     NR_110209  LOC101927053
22  chr2   97139511       97739714     NR_135564  LOC105373496
23  chr2  131966710      132145044  NM_001077637        WTH3DI
24  chr2  131966710      132145044  NM_001083538         POTEE
25  chr2  131966710      132145044     NR_030728     LOC440910
26  chr4    9042935        9817012     NM_000798          DRD5
27  chr4    9042935        9817012  NM_001040448       DEFB131
28  chr4    9042935        9817012  NM_001242326      USP17L25
36  chr4    9042935        9817012  NM_001256852      USP17L10
37  chr4    9042935        9817012  NM_001256853      USP17L12
39  chr4    9042935        9817012  NM_001256854      USP17L11
42  chr4    9042935        9817012  NM_001256855      USP17L13
43  chr4    9042935        9817012  NM_001256857      USP17L17
44  chr4    9042935        9817012  NM_001256860      USP17L19
45  chr4    9042935        9817012  NM_001256861      USP17L20
46  chr4    9042935        9817012  NM_001256894      USP17L15
47  chr4    9042935        9817012     NR_027279      USP17L6P
48  chr4    9042935        9817012     NR_031688      MIR548I2
49  chr4    9042935        9817012     NR_046416      USP17L9P,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  233745636      234714084  NM_001012985          COA6
2   chr1  233745636      234714084  NM_001300845       SLC35F3
4   chr1  233745636      234714084     NM_002245         KCNK1
5   chr1  233745636      234714084     NM_005646        TARBP1
7   chr1  233745636      234714084     NR_038426     LINC01354
8   chr1  233745636      234714084     NR_039625       MIR4427
9   chr1  233745636      234714084     NR_039818       MIR4671
10  chr1  233745636      234714084     NR_125961  LOC101927765
12  chr2   51186852       51479957  NM_001330079         NRXN1
15  chr2   51186852       51479957     NR_135237     LOC730100
16  chr4   81820520       81980012     NM_001201          BMP3
17  chr4   81820520       81980012  NM_001206997       C4orf22
18  chr7  110521254      110695978  NM_001244606        IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr5  109830849      110066798  NM_001039763   TMEM232
1  chr5  109830849      110066798     NR_031644  MIR548F3,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr11  121987064      122094812  NR_024430   MIR100HG
1  chr11  121987064      122094812  NR_029477  MIRLET7A2
2  chr11  121987064      122094812  NR_029515     MIR100,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152369751      152812614  NM_001024679       C1orf68
1    chr1  152369751      152812614  NM_001025231          KPRP
2    chr1  152369751      152812614  NM_001276331         LCE1C
3    chr1  152369751      152812614     NM_014357         LCE2B
4    chr1  152369751      152812614     NM_016190          CRNN
5    chr1  152369751      152812614     NM_019060         CRCT1
6    chr1  152369751      152812614     NM_032563         LCE3D
7    chr1  152369751      152812614     NM_178348         LCE1A
8    chr1  152369751      152812614     NM_178349         LCE1B
9    chr1  152369751      152812614     NM_178352         LCE1D
10   chr1  152369751      152812614     NM_178353         LCE1E
11   chr1  152369751      152812614     NM_178354         LCE1F
12   chr1  152369751      152812614     NM_178356         LCE4A
13   chr1  152369751      152812614     NM_178428         LCE2A
14   chr1  152369751      152812614     NM_178429         LCE2C
15   chr1  152369751      152812614     NM_178430         LCE2D
16   chr1  152369751      152812614     NM_178431         LCE3A
17   chr1  152369751      152812614     NM_178433         LCE3B
18   chr1  152369751      152812614     NM_178434         LCE3C
19   chr1  152369751      152812614     NM_178435         LCE3E
20   chr1  152369751      152812614     NM_178438         LCE5A
21  chr18    1681670        3275732  NM_001144944        MYL12B
23  chr18    1681670        3275732  NM_001303047        MYL12A
26  chr18    1681670        3275732  NM_001308401        METTL4
27  chr18    1681670        3275732     NM_003803         MYOM1
28  chr18    1681670        3275732     NM_006101         NDC80
29  chr18    1681670        3275732     NM_014646         LPIN2
30  chr18    1681670        3275732     NM_015295        SMCHD1
31  chr18    1681670        3275732     NM_032048       EMILIN2
33  chr18    1681670        3275732     NR_026659     LOC727896
34  chr18    1681670        3275732     NR_033754        CBX3P2
35  chr18    1681670        3275732     NR_130143  LOC104968399
38   chr4   69255254       69433396     NM_001077       UGT2B17
39   chr4   69255254       69433396     NM_014058     TMPRSS11E
40   chr9    9866837       10065600     NM_002839         PTPRD,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   54754501       55368994     NR_031628    MIR1297
1  chr13   71701380       71846584     NR_047699  LINC00348
2  chr16   29519833       29699330  NM_001030288        SPN
3  chr16   29519833       29699330  NM_001318249       QPRT
5  chr16   29519833       29699330     NR_049833  MIR3680-2
6  chr16   29519833       29699330     NR_135305     SMG1P2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  162804371      162963713     NM_178550       CCDC190
1  chr11   48401781       48512623  NM_001005512        OR4A47
2  chr18   63793035       64215877     NM_021153         CDH19
3   chr5   63787438       64035101  NM_001029875        RGS7BP
4   chr5   63787438       64035101  NM_001164442       FAM159B
5   chr5   63787438       64035101     NM_173829      SREK1IP1
7   chr6   80978691       81119740     NM_000056        BCKDHB
8   chr9   67603943       67783966     NR_121606  LOC102723709,    chrom  cnv_start  cnv_terminate       tx_name       gene_name
0  chr21   44779732       44893362  NM_001320643    LOC102724428
1  chr21   44779732       44893362     NM_173354            SIK1
2  chr21   44779732       44893362     NR_026863       LINC00313
3  chr21   44779732       44893362     NR_026960       LINC00319
4  chr21   44779732       44893362     NR_131902  TCONS_00029157
5  chr21   44779732       44893362     NR_136540    LOC102724354
6   chr9   44238827       44487005     NR_121564    LOC101927827
7   chr9   44238827       44487005     NR_126050    LOC103908605,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   28456069       28563515     NM_004667      HERC2
1  chr15   28564339       28899512     NM_004667      HERC2
2  chr15   28564339       28899512     NR_033351    GOLGA8F
4  chr15   28564339       28899512     NR_033353    GOLGA8G
6  chr15   28564339       28899512     NR_039734  MIR4509-3
8   chr2  185160657      185359311     NR_039638  MIR548AE1
9   chr9   28198556       28376286  NM_001258282     LINGO2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr2  236675415      236776196  NM_001244888      AGAP1
2  chr22   20154536       20257461     NM_023004      RTN4R
3  chr22   20154536       20257461     NR_026919  LINC00896
4  chr22   20154536       20257461     NR_031618    MIR1286
5  chr22   20154536       20257461     NR_038460  LOC284865
6   chr8   86628546       87049787     NR_003594   REXO1L2P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241511172      241637626  NM_001282773          RGS7
1   chr15   28298096       28433414     NM_000275          OCA2
3   chr15   28298096       28433414     NM_004667         HERC2
4   chr16   82958219       83061400  NM_001220488         CDH13
6   chr16   82958219       83061400     NR_110937  LOC101928417
7    chr2   26596319       26901928  NM_001029881          CIB4
8    chr2   26596319       26901928  NM_001105519       C2orf70
9    chr2   26596319       26901928     NM_004802          OTOF
10   chr2   26596319       26901928     NM_033505       SELENOI
11   chr2   26596319       26901928     NM_145038          DRC1
13   chr2   35659665       35789923     NR_039629      MIR548AD
14  chr20   14619560       14721605     NM_080676       MACROD2
15   chr3  156117846      156259481  NM_001308197          SSR3
18   chr3  156117846      156259481  NM_001308217        KCNAB1
23   chr3  156117846      156259481     NR_046618    KCNAB1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82163535       83766453  NM_001297704        ADGRL2
2    chr1   82163535       83766453     NR_110632     LINC01361
4    chr1  145275088      147937293  NM_001012758        NUDT17
5    chr1  145275088      147937293  NM_001039888      ANKRD34A
6    chr1  145275088      147937293  NM_001097612        GPR89A
7    chr1  145275088      147937293  NM_001101663        NBPF11
9    chr1  145275088      147937293  NM_001144829          FMO5
10   chr1  145275088      147937293  NM_001184795        PEX11B
11   chr1  145275088      147937293  NM_001201325         PDZK1
12   chr1  145275088      147937293  NM_001256336         CHD1L
13   chr1  145275088      147937293  NM_001277444         NBPF9
14   chr1  145275088      147937293  NM_001278141        NBPF12
15   chr1  145275088      147937293  NM_001278267        NBPF20
16   chr1  145275088      147937293  NM_001280799       ANKRD35
17   chr1  145275088      147937293  NM_001302371        NBPF10
18   chr1  145275088      147937293  NM_001303040        ITGA10
19   chr1  145275088      147937293  NM_001303456        POLR3C
20   chr1  145275088      147937293  NM_001313972         TXNIP
23   chr1  145275088      147937293     NM_004326          BCL9
24   chr1  145275088      147937293     NM_005105         RBM8A
25   chr1  145275088      147937293     NM_005266          GJA5
26   chr1  145275088      147937293     NM_005267          GJA8
27   chr1  145275088      147937293     NM_005399        PRKAB2
28   chr1  145275088      147937293     NM_006099         PIAS3
31   chr1  145275088      147937293     NM_007053         CD160
32   chr1  145275088      147937293     NM_014455        RNF115
33   chr1  145275088      147937293     NM_016334        GPR89B
34   chr1  145275088      147937293     NM_016361          ACP6
35   chr1  145275088      147937293     NM_032305       POLR3GL
36   chr1  145275088      147937293     NM_145277          HFE2
37   chr1  145275088      147937293     NM_153713         LIX1L
39   chr1  145275088      147937293     NM_203458      NOTCH2NL
40   chr1  145275088      147937293     NR_002305       PDIA3P1
41   chr1  145275088      147937293     NR_002328        GNRHR2
42   chr1  145275088      147937293     NR_024442     LOC728989
43   chr1  145275088      147937293     NR_038423     LINC00624
44   chr1  145275088      147937293     NR_049810       MIR5087
46   chr1  145275088      147937293     NR_102405         NBPF8
47   chr1  145275088      147937293     NR_103466       NBPF13P
50   chr1  145275088      147937293     NR_104217       NBPF25P
52   chr1  145275088      147937293     NR_106794       MIR6736
53   chr1  145275088      147937293     NR_106967       MIR6077
56   chr1  145275088      147937293     NR_111930  LOC100132057
57   chr1  145275088      147937293     NR_111936       PDZK1P1
59   chr1  145275088      147937293     NR_120331  LOC101927468
60   chr1  145275088      147937293     NR_121645       RNVU1-8
61   chr1  145275088      147937293     NR_125967  LOC101928979
62   chr1  145275088      147937293     NR_135559  LOC100505824
65  chr16   29511399       29632700     NR_049833     MIR3680-2
66  chr16   29511399       29632700     NR_135305        SMG1P2
68  chr16   88428334       88539764  NM_001127464        ZNF469
69  chr16   88428334       88539764     NM_153813         ZFPM1
70  chr16   88428334       88539764     NR_049821       MIR5189
71   chr7   94292579       94446695  NM_001184962         PEG10,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11    6710717        6812820  NM_001004489    OR2AG1
1  chr11    6710717        6812820  NM_001004490    OR2AG2
2  chr11    6710717        6812820     NR_003945    GVINP1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   40681196       40797903  NM_001258419        LRRC4C
1  chr13   19672644       19779577     NM_006001        TUBA3C
2  chr13   19672644       19779577     NR_126054  LOC101928697
3  chr16   76548654       76708590  NM_001322181       CNTNAP4
5  chr16   76548654       76708590     NR_110934  LOC101928203,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   31372567       31649961  NM_001304274    IMMP1L
1   chr11   31372567       31649961     NM_019040      ELP4
2   chr11   31372567       31649961     NM_181706   DNAJC24
3   chr11   31372567       31649961     NM_181807     DCDC1
4   chr18     644068         748354  NM_001012716    TYMSOS
5   chr18     644068         748354     NM_001071      TYMS
6   chr18     644068         748354  NM_001126123    ENOSF1
7   chr18     644068         748354  NM_001289036     CLUL1
11  chr18     644068         748354     NM_005433      YES1
14  chr19   47790876       47984771  NM_001009813     MEIS3
15  chr19   47790876       47984771  NM_001271749     C5AR2
17  chr19   47790876       47984771  NM_001291296      KPTN
20  chr19   47790876       47984771     NM_001736     C5AR1
21  chr19   47790876       47984771     NM_014681     DHX34
22  chr19   47790876       47984771     NM_015063    SLC8A2
24  chr21   17859481       17979143     NR_027790  MIR99AHG
26  chr21   17859481       17979143     NR_029480  MIRLET7C
27  chr21   17859481       17979143     NR_029514    MIR99A
28  chr21   17859481       17979143     NR_029694  MIR125B2
37   chr6  120198182      120380068     NR_036098   MIR3144
38   chr7  110677974      110879839  NM_001099658     LRRN3
39   chr7  110677974      110879839  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   19692033       19810843     NM_006001        TUBA3C
1   chr13   19692033       19810843     NR_126054  LOC101928697
2   chr22   20107094       20242412  NM_001243537       CCDC188
3   chr22   20107094       20242412  NM_001278639        RANBP1
6   chr22   20107094       20242412     NM_013373        ZDHHC8
7   chr22   20107094       20242412     NM_023004         RTN4R
8   chr22   20107094       20242412     NR_026919     LINC00896
9   chr22   20107094       20242412     NR_031618       MIR1286
10  chr22   20107094       20242412     NR_038460     LOC284865
11   chr4  118850730      118967222     NM_004784         NDST3,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   63151596       63408037  NR_047029  LINC00448,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88955090       89394202  NM_001099338      NUTM2A
1   chr10   88955090       89394202  NM_001178118      MINPP1
3   chr10   88955090       89394202     NR_024397  NUTM2A-AS1
4   chr10   88955090       89394202     NR_029408   LINC00863
5   chr10   88955090       89394202     NR_039825     MIR4678
6   chr10   88955090       89394202     NR_046091   LINC00864
7   chr10   88955090       89394202     NR_075100      NUTM2D
9   chr18   56094499       56225690     NM_052947       ALPK2
10  chr18   56094499       56225690     NR_029667      MIR122
11  chr18   56094499       56225690     NR_039899     MIR3591
12   chr5  167286745      167513559  NM_001080428       TENM2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr7     121260         382505  NM_001195127  WI2-2373I1.2
1  chr7     121260         382505     NM_020223        FAM20C
2  chr7     121260         382505     NR_108065  LOC100507642
3  chr7     121260         382505     NR_134324  LOC105375115
4  chr7     121260         382505     NR_134325  LOC102723672,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr7  109589140      109690081  NR_003024   EIF3IP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   47813663       47943098  NM_001077503          TAC4
1   chr17   47813663       47943098  NM_001199158          KAT7
2   chr17   47813663       47943098  NM_001242791      FLJ45513
3   chr17   47813663       47943098     NM_030802       FAM117A
4   chr17   78263511       78395838  NM_001164637         ENDOV
6   chr17   78263511       78395838  NM_001256071        RNF213
8   chr17   78263511       78395838     NR_029376  LOC100294362
9   chr17   78263511       78395838     NR_039883       MIR4730
10   chr2   26624712       26829718  NM_001029881          CIB4
11   chr2   26624712       26829718  NM_001105519       C2orf70
12   chr2   26624712       26829718     NM_004802          OTOF
13   chr2   26624712       26829718     NM_145038          DRC1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr19   33730689       34889130     NM_000285       PEPD
1   chr19   33730689       34889130  NM_001127895      CHST8
3   chr19   33730689       34889130  NM_001129994     KCTD15
4   chr19   33730689       34889130  NM_001252296      CEBPG
5   chr19   33730689       34889130  NM_001285829      CEBPA
6   chr19   33730689       34889130  NM_001289789        GPI
10  chr19   33730689       34889130     NM_014686   KIAA0355
11  chr19   33730689       34889130     NM_015578     LSM14A
13  chr19   33730689       34889130     NR_026887  CEBPA-AS1
14   chr7   12210416       12466857  NM_001134232   TMEM106B
15   chr7   12210416       12466857  NM_001135924       VWDE,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr15   28706892       28819247  NR_033351    GOLGA8F
1  chr15   28706892       28819247  NR_033353    GOLGA8G
2  chr15   28706892       28819247  NR_039734  MIR4509-3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   41673510       41822721  NM_001164595        PDZRN4
1   chr16   21520604       22968380  NM_001077180        METTL9
2   chr16   21520604       22968380  NM_001135865        NPIPB5
3   chr16   21520604       22968380  NM_001161683          OTOA
4   chr16   21520604       22968380  NM_001164579      C16orf52
5   chr16   21520604       22968380  NM_001258033        POLR3E
7   chr16   21520604       22968380  NM_001310148        NPIPB4
8   chr16   21520604       22968380     NM_001802          CDR2
9   chr16   21520604       22968380     NM_003366        UQCRC2
10  chr16   21520604       22968380     NM_005849         IGSF6
11  chr16   21520604       22968380     NM_006043        HS3ST2
12  chr16   21520604       22968380     NM_013302         EEF2K
15  chr16   21520604       22968380     NM_173615         VWA3A
16  chr16   21520604       22968380     NM_173806         PDZD9
17  chr16   21520604       22968380     NR_002594      SLC7A5P2
18  chr16   21520604       22968380     NR_003370        RRN3P1
19  chr16   21520604       22968380     NR_003676     LOC653786
20  chr16   21520604       22968380     NR_027154        SMG1P1
21  chr16   21520604       22968380     NR_027460        RRN3P3
22  chr16   21520604       22968380     NR_110930  LOC101927814
23  chr16   21520604       22968380     NR_136333       MFSD13B
24  chr19   57870923       57984646  NM_001023561        ZNF749
25  chr19   57870923       57984646  NM_001144068        ZNF772
26  chr19   57870923       57984646  NM_001172773        ZNF548
27  chr19   57870923       57984646  NM_001330617         ZNF17
29  chr19   57870923       57984646     NM_020633         VN1R1
30  chr19   57870923       57984646     NM_020657        ZNF304
31  chr19   57870923       57984646     NM_173631        ZNF547
32  chr19   57870923       57984646     NR_002166      TRAPPC2B
33  chr21   23091842       23304487     NR_038872     LINC00317
34  chr21   23091842       23304487     NR_109958     LINC01425
35   chr6  119738837      119866924     NR_046100     LOC285762,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr20   14802319       14931397  NM_080676       MACROD2
1  chr20   14802319       14931397  NR_037841   MACROD2-AS1
3  chr21   23158201       24126649  NR_038400     LINC00308
4  chr21   23158201       24126649  NR_109958     LINC01425
5  chr21   23158201       24126649  NR_109959  LOC101927843
6   chr6  136919922      137059506  NM_005923        MAP3K5
7   chr6  136919922      137059506  NR_125858  LOC101928461
8   chr9   44258491       44525482  NR_121564  LOC101927827
9   chr9   44258491       44525482  NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12    1054619        1183577  NM_001297419     RAD52
3   chr12    1054619        1183577  NM_001301248      ERC1
5   chr17   48397741       48548717  NM_001166131      EME1
6   chr17   48397741       48548717     NM_001267      CHAD
7   chr17   48397741       48548717  NM_001288968     ACSF2
8   chr17   48397741       48548717     NM_016504    MRPL27
9   chr17   48397741       48548717     NM_018509    LRRC59
10  chr17   48397741       48548717     NM_022167     XYLT2
12   chr4   94019933       94183383     NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr17   47910111       48182368  NM_001077503        TAC4
1   chr17   47910111       48182368  NM_001199898        PDK2
4   chr17   47910111       48182368  NM_001242791    FLJ45513
5   chr17   47910111       48182368     NM_001934        DLX4
6   chr17   47910111       48182368     NM_002204       ITGA3
8   chr17   47910111       48182368     NM_005220        DLX3
10  chr17   47910111       48182368     NR_038230   LOC284080
11   chr2   95450381       95652896     NM_144705       TEKT4
12   chr2   95450381       95652896     NR_003366  ANKRD20A8P
13   chr2   95450381       95652896     NR_037597   LOC442028
14   chr4  108681898      108782973  NM_001136258       SGMS2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   53050151       53194284  NM_001098512      PRKG1
2   chr10   53050151       53194284     NR_030336     MIR605
3   chr11   48342423       48469010  NM_001004702      OR4C3
4   chr11   48342423       48469010  NM_001005513     OR4C45
5   chr15   36116093       36219529     NR_038251   DPH6-AS1
6   chr15   36116093       36219529     NR_039735    MIR4510
7   chr15   59932653       60200476  NM_001320674      BNIP2
9   chr15   59932653       60200476  NM_001320929     GTF2A2
12   chr4     142197         541773  NM_001039127     ZNF718
13   chr4     142197         541773  NM_001137608     ZNF732
14   chr4     142197         541773  NM_001289053       PIGG
17   chr4     142197         541773     NM_003441     ZNF141
18   chr4     142197         541773     NM_133474     ZNF721
19   chr4     142197         541773     NR_002451    ABCA11P
20   chr4     142197         541773     NR_027481    ZNF876P
21   chr4     142197         541773     NR_030297     MIR571
26   chr4   16244390       16350521     NR_027696  TAPT1-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10    7089332        7305407  NM_001018039     SFMBT2
2   chr10    7089332        7305407     NR_132972   SNORD129
3    chr7  110551838      110745238  NM_001099658      LRRN3
4    chr7  110551838      110745238  NM_001244606     IMMP2L
6    chr9   28620458       29595824  NM_001258282     LINGO2
8    chr9   28620458       29595824     NR_030597     MIR876
9    chr9   28620458       29595824     NR_030618     MIR873
10   chr9   31264663       31471818     NR_135134  LINC01243,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   79741484       79947473  NM_015206  KIAA1024,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  245008034      245224771  NM_001143943        EFCAB2
2   chr1  245008034      245224771  NM_001312871         COX20
4   chr1  245008034      245224771     NM_004501        HNRNPU
7   chr1  245008034      245224771     NR_111907  LOC101928068
8   chr1  245008034      245224771     NR_132782      SNORA100
9   chr4     128275         278630  NM_001039127        ZNF718
10  chr4     128275         278630  NM_001137608        ZNF732
13  chr4     128275         278630     NR_027481       ZNF876P
16  chr5  167262953      167568037  NM_001080428         TENM2
18  chr9   41860626       45300561  NM_001012419     ANKRD20A3
20  chr9   41860626       45300561  NM_001012421     ANKRD20A2
22  chr9   41860626       45300561  NM_001145196     SPATA31A6
23  chr9   41860626       45300561  NM_001201380      CNTNAP3B
24  chr9   41860626       45300561     NM_199244       FOXD4L4
25  chr9   41860626       45300561     NR_003670        FGF7P3
26  chr9   41860626       45300561     NR_015363         GLIDR
27  chr9   41860626       45300561     NR_026558        AQP7P3
28  chr9   41860626       45300561     NR_027421        FAM27C
29  chr9   41860626       45300561     NR_027472     LOC642929
30  chr9   41860626       45300561     NR_046175     LOC286297
31  chr9   41860626       45300561     NR_111893     CNTNAP3P2
32  chr9   41860626       45300561     NR_121564  LOC101927827
33  chr9   41860626       45300561     NR_121570  LOC101928381
34  chr9   41860626       45300561     NR_121572      GXYLT1P3
36  chr9   41860626       45300561     NR_121606  LOC102723709
39  chr9   41860626       45300561     NR_126048  LOC102724238
40  chr9   41860626       45300561     NR_126049     LOC554249
41  chr9   41860626       45300561     NR_126050  LOC103908605
42  chr9   41860626       45300561     NR_126166       FAM74A7
43  chr9   41860626       45300561     NR_131213   XLOC_007697
44  chr9   41860626       45300561     NR_135597  LOC101928195
45  chr9   41860626       45300561     NR_136299  LOC101929583
46  chr9   41860626       45300561     NR_136310  LOC105379252
48  chr9   41860626       45300561     NR_144466  LOC105379807,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   21504215       21658911  NM_001077180        METTL9
2  chr16   21504215       21658911     NM_005849         IGSF6
3  chr16   21504215       21658911     NR_002594      SLC7A5P2
4  chr16   21504215       21658911     NR_027155        SMG1P3
5  chr16   21504215       21658911     NR_049833     MIR3680-2
6  chr16   21504215       21658911     NR_110930  LOC101927814,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   47054405       47167580  NM_001171506         MCFD2
3  chr2   47054405       47167580  NM_001288953         TTC7A
4  chr2   47054405       47167580     NR_024452     LINC01119
5  chr2   51656629       53178058     NR_039630       MIR4431
6  chr2   51656629       53178058     NR_135237     LOC730100
7  chr2   51656629       53178058     NR_135239  LOC105374596
8  chr2   84640320       84890908     NM_001370         DNAH6
9  chr2   84640320       84890908     NM_003849        SUCLG1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1   79050146       79218435     NM_006417     IFI44
1  chr1   79050146       79218435     NM_006820    IFI44L
3  chr4   88532797       88752646  NM_001184694      MEPE
4  chr4   88532797       88752646     NM_004407      DMP1
5  chr4   88532797       88752646     NM_004967      IBSP
6  chr4   88532797       88752646     NM_014208      DSPP
7  chr7  110684404      110853502  NM_001099658     LRRN3
8  chr7  110684404      110853502  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr13   54756018       55261649     NR_031628     MIR1297
1    chr8    7074565        7318983  NM_001081551    DEFB103A
2    chr8    7074565        7318983  NM_001164457     ZNF705G
3    chr8    7074565        7318983  NM_001205266      DEFB4B
4    chr8    7074565        7318983  NM_001256873     USP17L1
5    chr8    7074565        7318983  NM_001256874     USP17L4
6    chr8    7074565        7318983     NM_058200     SPAG11B
10   chr8    7074565        7318983     NR_003668  DEFB109P1B
11   chr8    7074565        7318983     NR_027000   LINC00965
14   chr8    7074565        7318983     NR_027423      FAM66B,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   68002398       68146109  NM_001127384    CTNNA3
2   chr11   64877031       65038454  NM_001004326  SLC22A20
3   chr11   64877031       65038454  NM_001008778     SPDYC
4   chr11   64877031       65038454  NM_001198868     CAPN1
6   chr11   64877031       65038454  NM_001277233    TM7SF2
7   chr11   64877031       65038454     NM_001997       FAU
8   chr11   64877031       65038454     NM_002689     POLA2
9   chr11   64877031       65038454     NM_013265     VPS51
10  chr11   64877031       65038454     NM_014205    ZNHIT2
11  chr11   64877031       65038454     NM_032431     SYVN1
13  chr11   64877031       65038454     NR_037567    MRPL49
16  chr11   64877031       65038454     NR_106809   MIR6751
17   chr9   39098943       39205116     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  144662743      144925184  NM_001002811    PDE4DIP
4    chr1  144662743      144925184  NM_001277444      NBPF9
5    chr1  144662743      144925184  NM_001278267     NBPF20
6    chr1  144662743      144925184     NR_102405      NBPF8
7   chr15   28696983       28882351     NR_033351    GOLGA8F
8   chr15   28696983       28882351     NR_033353    GOLGA8G
9   chr15   28696983       28882351     NR_039734  MIR4509-3
10   chr2   75874582       76575939  NM_001201334      GCFC2
13   chr2   75874582       76575939     NM_014763     MRPL19,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245040385      245206485  NM_001143943        EFCAB2
3    chr1  245040385      245206485     NR_111907  LOC101928068
4   chr10   81477200       81770438     NM_003019         SFTPD
5   chr10   81477200       81770438     NR_002724         MBL1P
6   chr10   81477200       81770438     NR_029407     LOC642361
7   chr10   81477200       81770438     NR_033857       BMS1P21
8   chr10   81477200       81770438     NR_120611    NUTM2B-AS1
11  chr21   17880959       18091606     NR_027790      MIR99AHG
13  chr21   17880959       18091606     NR_029480      MIRLET7C
14  chr21   17880959       18091606     NR_029514        MIR99A
15  chr21   17880959       18091606     NR_029694      MIR125B2
24   chr3    3817828        3970288  NM_001324189         LRRN1
25   chr3   60047649       60432485  NM_001320899          FHIT
27   chr4   47984613       48195671     NM_000087         CNGA1
28   chr4   47984613       48195671     NM_003215           TEC
29   chr4   47984613       48195671     NM_003328           TXK
30   chr4   47984613       48195671     NM_207330        NIPAL1
31   chr4   47984613       48195671     NR_125879  LOC101927157,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10    5079042        5204382  NM_001253908       AKR1C3
3   chr10    5079042        5204382     NR_027916      AKR1C8P
4   chr12   71506030       72242787  NM_001277227         LGR5
5   chr12   71506030       72242787     NM_004616       TSPAN8
6   chr12   71506030       72242787     NM_014999        RAB21
7   chr12   71506030       72242787     NM_018279       TMEM19
8   chr12   71506030       72242787     NM_031435        THAP2
9   chr12   71506030       72242787     NM_144982       ZFC3H1
10  chr12   71506030       72242787     NR_024072       MRS2P2
11  chr12   71506030       72242787     NR_027449      TBC1D15
12   chr9   11893388       13243746     NM_000550        TYRP1
13   chr9   11893388       13243746  NM_001261407         MPDZ
15   chr9   11893388       13243746     NM_203403      LURAP1L
16   chr9   11893388       13243746     NR_125775  LURAP1L-AS1
17   chr9   11893388       13243746     NR_132976     SNORD137,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   20778598       20926665  NM_001288713         NELL1
1   chr14   47866427       47976513  NM_001113498         MDGA2
2   chr22   19908809       20578339     NM_000754          COMT
5   chr22   19908809       20578339  NM_001190326         DGCR8
6   chr22   19908809       20578339  NM_001242313      TMEM191B
7   chr22   19908809       20578339  NM_001243537       CCDC188
8   chr22   19908809       20578339  NM_001278639        RANBP1
11  chr22   19908809       20578339  NM_001282512        TXNRD2
12  chr22   19908809       20578339  NM_001283116        TANGO2
15  chr22   19908809       20578339     NM_001670         ARVCF
18  chr22   19908809       20578339     NM_013373        ZDHHC8
19  chr22   19908809       20578339     NM_015672        RIMBP3
20  chr22   19908809       20578339     NM_022727        TRMT2A
21  chr22   19908809       20578339     NM_023004         RTN4R
22  chr22   19908809       20578339     NM_033257        DGCR6L
23  chr22   19908809       20578339     NR_003563       PI4KAP1
24  chr22   19908809       20578339     NR_026919     LINC00896
25  chr22   19908809       20578339     NR_029706        MIR185
26  chr22   19908809       20578339     NR_031618       MIR1286
27  chr22   19908809       20578339     NR_031706       MIR1306
28  chr22   19908809       20578339     NR_037412       MIR3618
29  chr22   19908809       20578339     NR_038460     LOC284865
30  chr22   19908809       20578339     NR_039918       MIR4761
31  chr22   19908809       20578339     NR_106874       MIR6816
32  chr22   19908809       20578339     NR_136560       FAM230A
33  chr22   19908809       20578339     NR_136572  LOC101927859
34   chr8  100688861      100974434  NM_001286692         RGS22
36   chr8  100688861      100974434     NM_004374         COX6C
37   chr8  100688861      100974434     NM_017890        VPS13B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  241516907      242677400     NM_000143         FH
1    chr1  241516907      242677400  NM_001004343   MAP1LC3C
2    chr1  241516907      242677400  NM_001195811       PLD5
3    chr1  241516907      242677400  NM_001282773       RGS7
4    chr1  241516907      242677400  NM_001290693      BECN2
5    chr1  241516907      242677400  NM_001319224       EXO1
6    chr1  241516907      242677400     NM_001821       CHML
7    chr1  241516907      242677400     NM_003679        KMO
9    chr1  241516907      242677400     NM_014322       OPN3
10   chr1  241516907      242677400     NM_144625      WDR64
12  chr10    2022826        2131990     NR_040253  LINC00700
13  chr10    2022826        2131990     NR_106720    MIR6072
14  chr12   85466573       86482910  NM_001079910     LRRIQ1
15  chr12   85466573       86482910     NM_005447     RASSF9
16  chr12   85466573       86482910     NM_006183        NTS
17  chr12   85466573       86482910     NM_006982       ALX1
18  chr12   85466573       86482910     NM_013244     MGAT4C
19   chr6  162503579      162938202     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10    7115774        7222064  NM_001018039     SFMBT2
2    chr4   91166504       91879809  NM_001145065     CCSER1
4    chr5     155763         454364  NM_001080478    LRRC14B
5    chr5     155763         454364  NM_001242412       AHRR
6    chr5     155763         454364     NM_004168       SDHA
7    chr5     155763         454364     NM_007277      EXOC3
8    chr5     155763         454364     NM_013232      PDCD6
9    chr5     155763         454364     NM_052909   PLEKHG4B
10   chr5     155763         454364     NM_145265    CCDC127
12   chr5     155763         454364     NR_104613      HRAT5
13   chr5     155763         454364     NR_126522  EXOC3-AS1
14   chr6  162640036      162782395     NM_013988      PARK2
15   chr7  110653308      110921820  NM_001099658      LRRN3
16   chr7  110653308      110921820  NM_001244606     IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   37553763       37722777  NM_001171170      SLC25A21
1  chr14   37553763       37722777  NM_001195296        MIPOL1
2  chr14   37553763       37722777     NR_033240  SLC25A21-AS1
3   chr9   67177001       67385925     NR_002817        AQP7P1
4   chr9   67177001       67385925     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr14   45681200       45848586  NM_018353      MIS18BP1
1  chr14   55722412       55823679  NM_017943        FBXO34
3   chr2  134114316      134316132  NM_207363        NCKAP5
4   chr8   58137846       58282519  NR_026772     LINC00588
5   chr8   58137846       58282519  NR_038235     LINC01606
6   chr8   58137846       58282519  NR_038874     LOC286177
7   chr8   58137846       58282519  NR_125818  LOC101929488, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr16   80822277       81007645  NM_152342         CDYL2
1  chr16   80822277       81007645  NR_131948       PRCAT47
2  chr22   17194252       17326221  NM_175878          XKR3
3  chr22   17194252       17326221  NR_003607       HSFY1P1
4  chr22   17194252       17326221  NR_134584  LOC101929350
5   chr6  162766076      162911280  NM_013988         PARK2
6   chr7  111219196      111524918  NM_014705         DOCK4
7   chr7  111219196      111524918  NR_103806     DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   60262498       60422868  NM_001278320     MS4A13
1   chr11   60262498       60422868     NM_017716     MS4A12
2   chr11   60262498       60422868     NR_026946  LINC00301
3   chr11   64902251       65038246  NM_001004326   SLC22A20
4   chr11   64902251       65038246  NM_001008778      SPDYC
5   chr11   64902251       65038246  NM_001198868      CAPN1
7   chr11   64902251       65038246     NM_002689      POLA2
10  chr17     369058         498849  NM_001128159      VPS53
12   chr8    3648027        3935982     NM_033225      CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  131366007      131513019  NM_001048209           NTM
1   chr11  131366007      131513019     NR_110140  LOC101929653
2   chr14   47817270       47942345  NM_001113498         MDGA2
3   chr15   77618471       77727538  NM_001304505        HMG20A
4   chr15   77618471       77727538     NM_024776         PEAK1
5   chr18    1684812        5106998  NM_001003809        DLGAP1
6   chr18    1684812        5106998  NM_001144944        MYL12B
12  chr18    1684812        5106998  NM_001278682         TGIF1
14  chr18    1684812        5106998  NM_001303047        MYL12A
18  chr18    1684812        5106998  NM_001308401        METTL4
20  chr18    1684812        5106998     NM_003803         MYOM1
22  chr18    1684812        5106998     NM_006101         NDC80
23  chr18    1684812        5106998     NM_014646         LPIN2
24  chr18    1684812        5106998     NM_015295        SMCHD1
25  chr18    1684812        5106998     NM_032048       EMILIN2
32  chr18    1684812        5106998     NR_024101    DLGAP1-AS1
33  chr18    1684812        5106998     NR_026659     LOC727896
34  chr18    1684812        5106998     NR_033754        CBX3P2
35  chr18    1684812        5106998     NR_036489    DLGAP1-AS5
36  chr18    1684812        5106998     NR_038895    DLGAP1-AS3
37  chr18    1684812        5106998     NR_102696    DLGAP1-AS4
38  chr18    1684812        5106998     NR_106776       MIR6718
39  chr18    1684812        5106998     NR_110428       GAPLINC
40  chr18    1684812        5106998     NR_119377    DLGAP1-AS2
41  chr18    1684812        5106998     NR_130143  LOC104968399
44  chr22   20626335       20728800     NR_136569     LOC729461
45  chr22   20626335       20728800     NR_136572  LOC101927859
46   chr5  125596498      125722463  NM_001146319        GRAMD3
47   chr5  125596498      125722463     NR_105039  LOC101927488
48   chr7   75746755       76239541  NM_001102594          DTX2
50   chr7   75746755       76239541  NM_001110199         SRRM3
51   chr7   75746755       76239541  NM_001110354           ZP3
52   chr7   75746755       76239541     NM_001540         HSPB1
54   chr7   75746755       76239541     NM_012479         YWHAG
55   chr7   75746755       76239541     NM_030570         UPK3B
56   chr7   75746755       76239541     NM_080744         SSC4D
57   chr7   75746755       76239541     NM_152992        POMZP3
58   chr7   75746755       76239541     NR_003262        FDPSP2
59   chr7   75746755       76239541     NR_029411  LOC100133091, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr13   63138480       63262945     NR_047029     LINC00448
1   chr5   66237749       66498908  NM_001164664         MAST4
5   chr5   66237749       66498908     NM_005582         CD180
7   chr5   66237749       66498908     NR_111908     MAST4-AS1
8   chr7   17733509       17965138     NM_015132         SNX13
9   chr9   44249980       44385684     NR_121564  LOC101927827,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  187192092      187305544     NR_126347   LINC01036
1   chr10   11547235       11793898  NM_001080491      USP6NL
3   chr10   11547235       11793898     NM_024693      ECHDC3
5   chr10   81427628       81674291  NM_001278495      NUTM2B
6   chr10   81427628       81674291     NR_027512     BEND3P3
7   chr10   81427628       81674291     NR_029407   LOC642361
8   chr10   81427628       81674291     NR_033857     BMS1P21
9   chr10   81427628       81674291     NR_120611  NUTM2B-AS1
12   chr9    6575247        6701834     NM_000170        GLDC,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr21   22393966       22615747     NM_004540      NCAM2
1   chr5   17726250       17878029     NR_134286  LOC646241
3   chr5   17763678       17907145     NR_134286  LOC646241
5   chr7  110683224      110799224  NM_001099658      LRRN3
6   chr7  110683224      110799224  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67671802       67916220  NM_001127384     CTNNA3
2   chr16   16467510       16577711  NM_001282511     NPIPA8
3    chr4     541672         714655     NM_000283      PDE6B
5    chr4     541672         714655  NM_001294341      MFSD7
6    chr4     541672         714655  NM_001317836      PCGF3
7    chr4     541672         714655     NM_002477       MYL5
8    chr4     541672         714655     NM_007100      ATP5I
9    chr4   69184382       69473291  NM_001031732     YTHDC1
10   chr4   69184382       69473291     NM_001077    UGT2B17
11   chr4   69184382       69473291     NM_014058  TMPRSS11E
12   chr6  162800884      163020658     NM_013988      PARK2
13   chr7    2670314        2834901  NM_001282440      GNA12
15   chr7    2670314        2834901  NM_001284355       AMZ1
18   chr7    2670314        2834901     NM_025250      TTYH3
20   chr8  111818052      112474748     NR_125416  LINC01608
22   chr8  111818052      112474748     NR_125418  LINC01609,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr8      40638         145052  NM_001005504    OR4F21,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15  100157293      100263300  NM_001130928      MEF2A
2   chr17    3364356        3553153     NM_000049       ASPA
4   chr17    3364356        3553153  NM_001170696    SPATA22
9   chr17    3364356        3553153     NM_004937       CTNS
10  chr17    3364356        3553153     NM_013276       SHPK
11  chr17    3364356        3553153     NM_018727      TRPV1
16  chr17    3364356        3553153     NM_145068      TRPV3
17   chr2  108826920      109296489  NM_001008743    SULT1C3
18   chr2  108826920      109296489     NM_001056    SULT1C2
19   chr2  108826920      109296489  NM_001193482      LIMS1
26   chr2  108826920      109296489     NM_006588    SULT1C4
27   chr2  108826920      109296489     NR_028063       GCC2
28   chr2  108826920      109296489     NR_037191  SULT1C2P1
29   chr2  108826920      109296489     NR_131251  LINC01594
30   chr2  108826920      109296489     NR_135290   GCC2-AS1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1   82236314       82351991  NM_001297704       ADGRL2
2  chr10   37356482       37811904     NM_052997     ANKRD30A
3  chr10   37356482       37811904     NR_104061    LINC00993
4  chr14   66247393       67585182     NM_020806         GPHN
5  chr14   66247393       67585182     NR_024338    LINC00238
6  chr20   14796937       14916977     NM_080676      MACROD2
7  chr20   14796937       14916977     NR_037841  MACROD2-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   37598287       37711210  NM_001171170      SLC25A21
1  chr14   37598287       37711210  NM_001195296        MIPOL1
2  chr14   37598287       37711210     NR_033240  SLC25A21-AS1
3   chr6  136856684      137150689     NM_000288          PEX7
4   chr6  136856684      137150689     NM_003980          MAP7
5   chr6  136856684      137150689     NM_005923        MAP3K5
6   chr6  136856684      137150689     NR_125858  LOC101928461
7   chr6  136856684      137150689     NR_134635  LOC101928429
8   chr6  162867232      163048487     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  133991800      134092074  NM_001105521       JAKMIP3
1   chr10  133991800      134092074  NM_001318878        STK32C
3   chr10  133991800      134092074     NM_006426        DPYSL4
6    chr2  117972980      119408470  NM_001321332        INSIG2
8    chr2  117972980      119408470     NM_006773         DDX18
9    chr2  117972980      119408470     NM_019044        CCDC93
10   chr2  117972980      119408470     NR_110272  LOC101927709
11   chr9   28190380       28381778  NM_001258282        LINGO2,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr5   59773682       59886565  NM_001165899       PDE4D
1   chr5   59773682       59886565     NR_024617       PART1
4   chr8    6606236        6958351  NM_001302265      DEFA1B
5   chr8    6606236        6958351     NM_001925       DEFA4
6   chr8    6606236        6958351     NM_001926       DEFA6
7   chr8    6606236        6958351     NM_004084       DEFA1
9   chr8    6606236        6958351     NM_005217       DEFA3
10  chr8    6606236        6958351     NM_005218       DEFB1
11  chr8    6606236        6958351     NM_018361      AGPAT5
12  chr8    6606236        6958351     NM_021010       DEFA5
13  chr8    6606236        6958351     NM_207411        XKR5
14  chr8    6606236        6958351     NR_029386     DEFA10P
15  chr8    6606236        6958351     NR_036686      DEFT1P
17  chr8    6606236        6958351     NR_045217  GS1-24F4.2
18  chr8    6606236        6958351     NR_073407      DEFA8P
19  chr8    6606236        6958351     NR_073408      DEFA9P
20  chr8    6606236        6958351     NR_073421     DEFA11P,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr20   14659849       14832589  NM_080676   MACROD2
1   chr7   11815307       11989552  NM_015204    THSD7A,     chrom  cnv_start  cnv_terminate       tx_name        gene_name
0   chr16    6674512        6778807  NM_001308117           RBFOX1
2    chr2  110205624      111794229     NM_000272            NPHP1
3    chr2  110205624      111794229  NM_001037866            RGPD6
5    chr2  110205624      111794229  NM_001099289           SH3RF3
8    chr2  110205624      111794229  NM_001142807            ACOXL
9    chr2  110205624      111794229  NM_001205288            LIMS4
11   chr2  110205624      111794229  NM_001321504           SEPT10
13   chr2  110205624      111794229     NM_004336             BUB1
14   chr2  110205624      111794229     NM_005054            RGPD5
16   chr2  110205624      111794229     NM_005434             MALL
17   chr2  110205624      111794229     NM_023016           SOWAHC
18   chr2  110205624      111794229     NR_027063        LINC00116
19   chr2  110205624      111794229     NR_027142        LOC440895
21   chr2  110205624      111794229     NR_027145  LIMS3-LOC440895
23   chr2  110205624      111794229     NR_027244        LINC01106
24   chr2  110205624      111794229     NR_027467            LIMS3
26   chr2  110205624      111794229     NR_036225          MIR4267
27   chr2  110205624      111794229     NR_037626     LOC100507334
28   chr2  110205624      111794229     NR_039941        MIR4436B1
30   chr2  110205624      111794229     NR_046110        LINC01123
32   chr2  110205624      111794229     NR_132975         SNORD132
33   chr2  110205624      111794229     NR_135529     LOC105373553,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   50814637       51142579  NM_001330082     NRXN1
1  chr2   50814637       51142579     NR_130470   MIR8485
2  chr7    8739816        8853086     NM_152745     NXPH1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2     938046        1386017     NM_018968         SNTG2
1   chr2     938046        1386017     NR_136151  LOC101060391
2   chr4  169175165      169314211  NM_001012967        DDX60L
4   chr4  169175165      169314211     NM_017631         DDX60
5   chr7   75349414       75939453     NM_000941           POR
6   chr7   75349414       75939453  NM_001040457        RHBDD2
7   chr7   75349414       75939453  NM_001110199         SRRM3
8   chr7   75349414       75939453  NM_001243198          HIP1
9   chr7   75349414       75939453  NM_001317788        STYXL1
11  chr7   75349414       75939453     NM_001540         HSPB1
12  chr7   75349414       75939453     NM_002991         CCL24
13  chr7   75349414       75939453     NM_005918          MDH2
14  chr7   75349414       75939453     NM_006072         CCL26
15  chr7   75349414       75939453     NM_031925      TMEM120A
16  chr7   75349414       75939453     NR_002955      SNORA14A
17  chr7   75349414       75939453     NR_039795       MIR4651
19  chr7   75349414       75939453     NR_135079       GTF2IP7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89050134       89435123  NM_001143837          NOX4
5   chr11   89050134       89435123     NM_153696        FOLH1B
7   chr15   26974632       27221295     NM_000810        GABRA5
9   chr15   26974632       27221295  NM_001270873        GABRG3
10  chr15   26974632       27221295  NM_001278631        GABRB3
13   chr2   81604038       82002105     NR_110161  LOC100507201
14  chr20   14843475       15293745  NM_001033087       MACROD2
16  chr20   14843475       15293745     NR_037841   MACROD2-AS1
18   chr7    4087943        4281650  NM_001079653          SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   16592510       16970215  NM_001114600         SZRD1
1    chr1   16592510       16970215  NM_001145277        NECAP2
2    chr1   16592510       16970215  NM_001310155       FAM231B
3    chr1   16592510       16970215     NM_017940         NBPF1
4    chr1   16592510       16970215     NM_018994        FBXO42
5    chr1   16592510       16970215     NM_198546       SPATA21
6    chr1   16592510       16970215     NR_023386       CROCCP3
7    chr1   16592510       16970215     NR_026752       CROCCP2
8    chr1   16592510       16970215     NR_037446       MIR3675
9    chr1   16592510       16970215     NR_135764  LOC100132147
10   chr1   16592510       16970215     NR_135765     LOC440570
11   chr1  108385356      108531115     NM_006113          VAV3
12   chr1  108385356      108531115     NR_046653      VAV3-AS1
13   chr1  108385356      108531115     NR_107006       MIR7852
14   chr1  245006422      245349367  NM_001143943        EFCAB2
16   chr1  245006422      245349367  NM_001312871         COX20
18   chr1  245006422      245349367     NM_004501        HNRNPU
19   chr1  245006422      245349367     NM_018012        KIF26B
22   chr1  245006422      245349367     NR_111907  LOC101928068
23   chr1  245006422      245349367     NR_132782      SNORA100
24  chr10   19608521       19870274  NM_001142308        MALRD1
25  chr20   14751701       14929843     NM_080676       MACROD2
26  chr20   14751701       14929843     NR_037841   MACROD2-AS1
28  chr20   14733831       15198785  NM_001033087       MACROD2
30  chr20   14733831       15198785     NR_037841   MACROD2-AS1
32   chr3    2289831        2641612  NM_001206955         CNTN4
34   chr4  121609271      121774068     NM_018699         PRDM5,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   81770126       81882954     NR_120571  MIR4300HG
1   chr14   55676633       56007273     NM_014924      ATG14
2   chr14   55676633       56007273     NM_017943     FBXO34
4   chr14   55676633       56007273     NM_199047      TBPL2
5   chr16   29488473       29602551     NR_135305     SMG1P2
7   chr21   22335537       22568911     NM_004540      NCAM2
8    chr7  110730032      111802291  NM_001099658      LRRN3
9    chr7  110730032      111802291  NM_001244606     IMMP2L
10   chr7  110730032      111802291     NM_014705      DOCK4
12   chr7  110730032      111802291     NR_103806  DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   25395558       26992348  NM_001290261        ZNF337
1   chr20   25395558       26992348  NM_001318226          NINL
3   chr20   25395558       26992348     NM_021067         GINS1
4   chr20   25395558       26992348     NM_152667          NANP
5   chr20   25395558       26992348     NR_003678       NCOR1P1
6   chr20   25395558       26992348     NR_004846  LOC100134868
7   chr20   25395558       26992348     NR_026713       FAM182A
8   chr20   25395558       26992348     NR_026714       FAM182B
10  chr20   25395558       26992348     NR_030386       MIR663A
11  chr20   25395558       26992348     NR_040095     MIR663AHG
12  chr20   25395558       26992348     NR_110001  LOC101926935
13  chr20   25395558       26992348     NR_110003  LOC101926955
14  chr20   25395558       26992348     NR_126465    ZNF337-AS1
17  chr20   25395558       26992348     NR_135006  LOC105372582
18  chr20   25395558       26992348     NR_135512  LOC105379511
19   chr5  104117492      104705244     NR_000039       RAB9BP1
20   chr7   64039849       64624911  NM_001007253        ERV3-1
21   chr7   64039849       64624911  NM_001160183        ZNF138
22   chr7   64039849       64624911  NM_001282360        ZNF107
23   chr7   64039849       64624911     NM_015852        ZNF117
24   chr7   64039849       64624911     NM_021148        ZNF273
25   chr7   64039849       64624911     NR_033245     LOC641746
26   chr7   64039849       64624911     NR_033416        CCT6P3
28   chr7   64039849       64624911     NR_077227  LOC100128885
30   chr7   64039849       64624911     NR_106898       MIR6839
31   chr9   41844345       41959743     NR_003670        FGF7P3
32   chr9   41844345       41959743     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    2059974        2166147     NR_106720       MIR6072
1   chr10  135241937      135399548     NM_000773        CYP2E1
2   chr10  135241937      135399548  NM_001143763         SYCE1
5   chr10  135241937      135399548     NR_002934        SCART1
6   chr10  135241937      135399548     NR_033789        SPRNP1
7   chr14   21940217       22283451  NM_001001912         OR4E2
8   chr14   21940217       22283451  NM_001005465        OR10G3
9   chr14   21940217       22283451  NM_001005466        OR10G2
10  chr14   21940217       22283451  NM_001163380         RAB2B
11  chr14   21940217       22283451  NM_001303523          TOX4
12  chr14   21940217       22283451  NM_001317107         OR4E1
13  chr14   21940217       22283451     NM_019852        METTL3
15  chr14   21940217       22283451     NR_111966         SALL2
17   chr9   41897806       42557934  NM_001012419     ANKRD20A3
18   chr9   41897806       42557934  NM_001012421     ANKRD20A2
19   chr9   41897806       42557934     NR_003670        FGF7P3
20   chr9   41897806       42557934     NR_015363         GLIDR
21   chr9   41897806       42557934     NR_121572      GXYLT1P3
24   chr9   41897806       42557934     NR_126048  LOC102724238
25   chr9   41897806       42557934     NR_126049     LOC554249
26   chr9   41897806       42557934     NR_136310  LOC105379252,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48419961       48559313  NM_001005512    OR4A47
1  chr12   27187661       27404880  NM_001080406  C12orf71
2  chr12   27187661       27404880     NM_015000    STK38L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr16    6711729        6923141  NM_001142334       RBFOX1
3   chr17   56185579       56876192     NM_000250          MPO
4   chr17   56185579       56876192     NM_000502          EPX
5   chr17   56185579       56876192  NM_001004707        OR4D2
6   chr17   56185579       56876192  NM_001038704     C17orf47
7   chr17   56185579       56876192  NM_001080439         HSF5
8   chr17   56185579       56876192  NM_001165927         MKS1
9   chr17   56185579       56876192  NM_001201457        TEX14
10  chr17   56185579       56876192  NM_001256782        SEPT4
12  chr17   56185579       56876192  NM_001305544        RNF43
15  chr17   56185579       56876192     NM_002876       RAD51C
16  chr17   56185579       56876192     NM_003168      SUPT4H1
17  chr17   56185579       56876192     NM_004687        MTMR4
18  chr17   56185579       56876192     NM_004758      TSPOAP1
19  chr17   56185579       56876192     NM_012374        OR4D1
20  chr17   56185579       56876192     NM_014906        PPM1E
22  chr17   56185579       56876192     NR_002307       MSX2P1
23  chr17   56185579       56876192     NR_027647          LPO
24  chr17   56185579       56876192     NR_029683       MIR142
25  chr17   56185579       56876192     NR_038410  TSPOAP1-AS1
29  chr17   56185579       56876192     NR_039889      MIR4736
32  chr17   56185579       56876192     NR_110810    SEPT4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   37571845       37684200  NM_001171170      SLC25A21
1   chr14   37571845       37684200  NM_001195296        MIPOL1
2   chr14   37571845       37684200     NR_033240  SLC25A21-AS1
3   chr14   47898737       48025532  NM_001113498         MDGA2
4   chr19   47861891       48250646  NM_001009813         MEIS3
5   chr19   47861891       48250646  NM_001277075        ZNF541
6   chr19   47861891       48250646  NM_001291296          KPTN
9   chr19   47861891       48250646     NM_014601          EHD2
10  chr19   47861891       48250646     NM_014681         DHX34
11  chr19   47861891       48250646     NM_015063        SLC8A2
12  chr19   47861891       48250646     NM_015710       GLTSCR2
13  chr19   47861891       48250646     NM_015711       GLTSCR1
14  chr19   47861891       48250646     NR_038452      NAPA-AS1
15  chr19   47861891       48250646     NR_038457          NAPA
16   chr3  156081870      156288743  NM_001308197          SSR3
19   chr3  156081870      156288743  NM_001308217        KCNAB1
24   chr3  156081870      156288743     NR_046618    KCNAB1-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  216218295      216436407  NM_001306129           FN1
3   chr2  216218295      216436407     NR_110607  LOC102724849
4   chr4    8958184        9312761  NM_001256852      USP17L10
5   chr4    8958184        9312761  NM_001256853      USP17L12
7   chr4    8958184        9312761  NM_001256854      USP17L11
10  chr4    8958184        9312761  NM_001256855      USP17L13
11  chr4    8958184        9312761  NM_001256857      USP17L17
12  chr4    8958184        9312761  NM_001256860      USP17L19
13  chr4    8958184        9312761  NM_001256861      USP17L20
14  chr4    8958184        9312761  NM_001256894      USP17L15
15  chr7  110733259      110869892  NM_001099658         LRRN3
16  chr7  110733259      110869892  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   80772917       81156313  NM_001100625      CENPN
1   chr16   80772917       81156313  NM_001100873   C16orf46
3   chr16   80772917       81156313  NM_001278425     PKD1L2
4   chr16   80772917       81156313  NM_001300728      ATMIN
5   chr16   80772917       81156313     NM_004483       GCSH
8   chr16   80772917       81156313     NM_020188       CMC2
11  chr16   80772917       81156313     NM_152342      CDYL2
12  chr16   80772917       81156313     NR_131948    PRCAT47
13   chr3  118682994      118916015  NM_001015887     IGSF11
14   chr3  118682994      118916015     NM_006952      UPK1B
16   chr3  118682994      118916015     NM_152539    C3orf30
17   chr4   66446389       66610754  NM_001281766      EPHA5
20   chr4   66446389       66610754     NR_034138  EPHA5-AS1
21   chr4  165893347      166207458  NM_001012414     TRIM61
22   chr4  165893347      166207458  NM_001100389    TMEM192
23   chr4  165893347      166207458  NM_001161522      KLHL2
25   chr4  165893347      166207458     NM_152620     TRIM60
26   chr4  165893347      166207458     NR_026575       GK3P
27   chr7   88956718       89302892     NM_181646    ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  120550464      120860312     NM_003750         EIF3A
1   chr10  120550464      120860312     NM_199461        NANOS1
2   chr10  120550464      120860312     NR_002917       SNORA19
3    chr2   97200322       97856935  NM_001115016        KANSL3
4    chr2   97200322       97856935  NM_001122646       FAM178B
5    chr2   97200322       97856935  NM_001164315       ANKRD36
7    chr2   97200322       97856935  NM_001293083        FER1L5
8    chr2   97200322       97856935  NM_001319085        ARID5A
10   chr2   97200322       97856935  NM_001320849        FAHD2B
11   chr2   97200322       97856935  NM_001322354        LMAN2L
12   chr2   97200322       97856935     NM_016466       ANKRD39
14   chr2   97200322       97856935     NM_017623         CNNM3
15   chr2   97200322       97856935     NM_017789        SEMA4C
16   chr2   97200322       97856935     NM_020184         CNNM4
18   chr2   97200322       97856935     NM_144994       ANKRD23
20   chr2   97200322       97856935     NR_036074       MIR3127
22   chr2   97200322       97856935     NR_110209  LOC101927053
23   chr7    8685543        8845913     NM_152745         NXPH1
24   chr9   39068876       39351095     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   71704914       71864626     NR_047699  LINC00348
1   chr15   59933964       60195390  NM_001320674      BNIP2
3   chr15   59933964       60195390  NM_001320929     GTF2A2
6   chr18   24573458       24726395  NM_001256316      CHST9
7   chr20    8543909        8667170     NM_015192      PLCB1
8    chr7   75783307       75887190  NM_001110199      SRRM3
9    chr7  109513951      109684962     NR_003024    EIF3IP1
10   chr7  109505416      109619104     NR_003024    EIF3IP1
11   chr7  110780263      110881530  NM_001244606     IMMP2L,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr4   94147872       94441110  NM_001510     GRID2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143516169      143834558  NM_001123068       PPIAL4G
1   chr1  143516169      143834558     NR_104014     LINC01138
2   chr1  143516169      143834558     NR_106967       MIR6077
3   chr1  143516169      143834558     NR_111930  LOC100132057
4   chr2   97151317       97499238  NM_001115016        KANSL3
5   chr2   97151317       97499238  NM_001285485        NEURL3
6   chr2   97151317       97499238  NM_001293083        FER1L5
7   chr2   97151317       97499238  NM_001319085        ARID5A
9   chr2   97151317       97499238  NM_001322354        LMAN2L
10  chr2   97151317       97499238     NM_017623         CNNM3
11  chr2   97151317       97499238     NM_020184         CNNM4
13  chr2   97151317       97499238     NR_036074       MIR3127
16  chr2   97151317       97499238     NR_135564  LOC105373496
17  chr4   80200975       80303944     NM_032693         NAA11
18  chr4   80200975       80303944     NR_038342     LINC01088
19  chr7  110433434      110705873  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   28680821       29064347  NM_001014989           LAT
1   chr16   28680821       29064347  NM_001142448         SPNS1
2   chr16   28680821       29064347  NM_001145795         SH2B1
4   chr16   28680821       29064347  NM_001199142         EIF3C
5   chr16   28680821       29064347  NM_001286075        ATP2A1
7   chr16   28680821       29064347  NM_001287251        NPIPB9
9   chr16   28680821       29064347  NM_001317856        EIF3CL
10  chr16   28680821       29064347     NM_001770          CD19
11  chr16   28680821       29064347     NM_003321          TUFM
15  chr16   28680821       29064347     NM_024816        RABEP2
16  chr16   28680821       29064347     NM_032815      NFATC2IP
17  chr16   28680821       29064347     NM_148416        ATXN2L
18  chr16   28680821       29064347     NR_039742       MIR4517
19  chr16   28680821       29064347     NR_039872       MIR4721
20  chr16   28680821       29064347     NR_046287    ATP2A1-AS1
21  chr16   28680821       29064347     NR_107058     MIR6862-2
22   chr3  193103425      193508220     NM_015560          OPA1
23   chr3  193103425      193508220     NM_032279       ATP13A4
24   chr3  193103425      193508220     NR_046634      OPA1-AS1
25   chr3  193103425      193508220     NR_046726   ATP13A4-AS1
27   chr9   67194575       68641359  NM_001012419     ANKRD20A3
28   chr9   67194575       68641359     NM_032250     ANKRD20A1
29   chr9   67194575       68641359     NR_002817        AQP7P1
30   chr9   67194575       68641359     NR_027422        FAM27B
31   chr9   67194575       68641359     NR_033907        FRG1JP
32   chr9   67194575       68641359     NR_039689      MIR4477B
33   chr9   67194575       68641359     NR_103833       FAM27E3
34   chr9   67194575       68641359     NR_121606  LOC102723709
35   chr9   67194575       68641359     NR_136300  LOC102724580
36   chr9   67194575       68641359     NR_144466  LOC105379807,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244980239      245092594  NM_001312871         COX20
2    chr1  244980239      245092594     NM_004501        HNRNPU
4    chr1  244980239      245092594     NR_132782      SNORA100
5   chr12  130202951      130767473     NM_007197         FZD10
6   chr12  130202951      130767473     NM_133448      TMEM132D
7   chr12  130202951      130767473     NR_024457  LOC100190940
8   chr12  130202951      130767473     NR_033834     FZD10-AS1
9   chr15   98259043       98472953     NR_024172     LINC00923
10  chr16   68631508       68804248  NM_001317184          CDH1
11  chr16   68631508       68804248  NM_001317195          CDH3
12  chr16   68631508       68804248     NR_106988     MIR7641-2
13  chr20   14670380       14891958     NM_080676       MACROD2
14  chr20   14670380       14891958     NR_037841   MACROD2-AS1
16   chr4   69184498       69286831  NM_001031732        YTHDC1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr13   40345871       40451490  NM_001145079         COG6
1   chr14   21866895       22263867  NM_001001912        OR4E2
2   chr14   21866895       22263867  NM_001005465       OR10G3
3   chr14   21866895       22263867  NM_001005466       OR10G2
4   chr14   21866895       22263867  NM_001163380        RAB2B
5   chr14   21866895       22263867  NM_001170629         CHD8
6   chr14   21866895       22263867  NM_001303523         TOX4
7   chr14   21866895       22263867  NM_001317107        OR4E1
8   chr14   21866895       22263867     NM_019852       METTL3
11  chr14   21866895       22263867     NR_111966        SALL2
13  chr17   56178435       56427430     NM_000250          MPO
14  chr17   56178435       56427430     NM_000502          EPX
15  chr17   56178435       56427430  NM_001004707        OR4D2
16  chr17   56178435       56427430  NM_001165927         MKS1
18  chr17   56178435       56427430     NM_003168      SUPT4H1
19  chr17   56178435       56427430     NM_004758      TSPOAP1
20  chr17   56178435       56427430     NM_012374        OR4D1
21  chr17   56178435       56427430     NR_002307       MSX2P1
22  chr17   56178435       56427430     NR_027647          LPO
23  chr17   56178435       56427430     NR_029683       MIR142
24  chr17   56178435       56427430     NR_038410  TSPOAP1-AS1
28  chr17   56178435       56427430     NR_039889      MIR4736
29   chr2   31441500       31560988     NM_000379          XDH
30   chr2   31441500       31560988  NM_001321270       CAPN14
31   chr2   31441500       31560988     NM_014600         EHD3
32   chr9   28199258       28487154  NM_001258282       LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89108131       89223342  NM_001143837          NOX4
6   chr12    9384713        9905274  NM_001197319        CLEC2D
7   chr12    9384713        9905274  NM_001267701        CLECL1
8   chr12    9384713        9905274     NM_001781          CD69
9   chr12    9384713        9905274     NM_002258         KLRB1
11  chr12    9384713        9905274     NR_002814     LOC374443
12  chr12    9384713        9905274     NR_024374     LOC642846
13  chr12    9384713        9905274     NR_033399        DDX12P
14  chr12    9384713        9905274     NR_036466     LINC00987
15  chr12    9384713        9905274     NR_040112         A2MP1
20  chr12    9384713        9905274     NR_120479  LOC101930452
21  chr12    9384713        9905274     NR_120481  LOC101928030
22  chr12    9384713        9905274     NR_128710     MIR1244-4
24  chr15   25772692       25930010     NM_024490        ATP10A
25   chr4   68995823       69098013     NM_182502     TMPRSS11B
26   chr4   68995823       69098013     NR_015446        FTLP10
27   chr4   68995823       69098013     NR_104048   TMPRSS11BNL
28   chr5      87287         234231  NM_001080478       LRRC14B
29   chr5      87287         234231     NM_004168          SDHA
30   chr5      87287         234231     NM_052909      PLEKHG4B
31   chr5      87287         234231     NM_145265       CCDC127
32   chr7  125000310      125164675     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   37429241       37619393     NM_052997   ANKRD30A
1   chr10   37429241       37619393     NR_104061  LINC00993
2   chr22   19904993       20222872     NM_000754       COMT
5   chr22   19904993       20222872  NM_001190326      DGCR8
6   chr22   19904993       20222872  NM_001243537    CCDC188
7   chr22   19904993       20222872  NM_001278639     RANBP1
10  chr22   19904993       20222872  NM_001282512     TXNRD2
11  chr22   19904993       20222872  NM_001283116     TANGO2
14  chr22   19904993       20222872     NM_001670      ARVCF
17  chr22   19904993       20222872     NM_013373     ZDHHC8
18  chr22   19904993       20222872     NM_022727     TRMT2A
19  chr22   19904993       20222872     NR_026919  LINC00896
20  chr22   19904993       20222872     NR_029706     MIR185
21  chr22   19904993       20222872     NR_031706    MIR1306
22  chr22   19904993       20222872     NR_037412    MIR3618
23  chr22   19904993       20222872     NR_038460  LOC284865
24  chr22   19904993       20222872     NR_039918    MIR4761
25  chr22   19904993       20222872     NR_106874    MIR6816
26   chr4   16161317       16272833     NM_153365      TAPT1
27   chr4   16161317       16272833     NR_027696  TAPT1-AS1
28   chr4   69258766       69367262     NM_014058  TMPRSS11E
29   chr4   73007144       73855088     NM_004885     NPFFR2
30   chr4   73007144       73855088     NM_014243    ADAMTS3
32   chr9   28544481       29133559  NM_001258282     LINGO2
34   chr9   28544481       29133559     NR_030597     MIR876
35   chr9   28544481       29133559     NR_030618     MIR873,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   68547286       68802353  NM_001305204      ZFP90
2  chr16   68547286       68802353  NM_001317184       CDH1
3  chr16   68547286       68802353  NM_001317195       CDH3
4  chr16   68547286       68802353     NR_106988  MIR7641-2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr19    1869530        2043108  NM_001130111      ABHD17A
1   chr19    1869530        2043108     NM_001319      CSNK1G2
2   chr19    1869530        2043108  NM_001329539       SCAMP4
3   chr19    1869530        2043108     NM_017572        MKNK2
4   chr19    1869530        2043108     NM_017797        BTBD2
5   chr19    1869530        2043108     NM_138422        ADAT3
6   chr19    1869530        2043108     NR_033400  CSNK1G2-AS1
7    chr6  162630297      162774857     NM_013988        PARK2
8    chr7  110504589      111195202  NM_001099658        LRRN3
9    chr7  110504589      111195202  NM_001244606       IMMP2L
11   chr7  152296641      152454252     NM_005431        XRCC2,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr4   69289766       69434326  NM_001077    UGT2B17
1  chr4   69289766       69434326  NM_014058  TMPRSS11E
2  chr6  120192838      120438451  NR_036098    MIR3144,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87668231       87847579  NM_001290053  LOC101927844
1    chr1   87668231       87847579     NM_006769          LMO4
2    chr1   87668231       87847579     NR_038324     LINC01364
3   chr14   21721742       21825406     NM_007192       SUPT16H
4   chr14   21721742       21825406     NM_020366       RPGRIP1
5   chr14   21721742       21825406     NM_031314        HNRNPC
6   chr18   67822749       67939609  NM_001318520          RTTN
7    chr3     385411         542729  NM_001253387          CHL1
9    chr3     385411         542729     NR_110739      CHL1-AS1
10   chr7   19727141       19831592  NM_001002926       TWISTNB
11   chr7   19727141       19831592     NM_152774       TMEM196
12   chr7   19727141       19831592     NR_036101       MIR3146,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr18   35056778       35237888  NM_020180     CELF4
1  chr18   35056778       35237888  NR_036202   MIR4318,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   99914650      100040419  NM_001284400     LRRC28
2   chr2  110126076      110240281  NM_001099289     SH3RF3
3  chr20   40501244       40797416     NM_133170      PTPRT
4  chr20   40580938       40723401     NM_133170      PTPRT
5   chr3  162907823      163150612     NR_033945  LINC01192
6   chr6  162719218      162936437     NM_013988      PARK2
7   chr7  110628687      110837354  NM_001099658      LRRN3
8   chr7  110628687      110837354  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88938758       89069088  NM_001099338      NUTM2A
1   chr10   88938758       89069088  NM_001330112      FAM35A
3   chr10   88938758       89069088     NR_024397  NUTM2A-AS1
4    chr4   66710706       67488627     NR_031673    MIR1269A
5    chr5  104416094      104520684     NR_000039     RAB9BP1
6    chr7  110589729      110708355  NM_001244606      IMMP2L
8    chr7  110680533      111066006  NM_001099658       LRRN3
9    chr7  110680533      111066006  NM_001244606      IMMP2L
11   chr7  110767273      110906945  NM_001244606      IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108405682      108810474  NM_001143989         NBPF4
1    chr1  108405682      108810474     NM_006113          VAV3
2    chr1  108405682      108810474     NM_013386      SLC25A24
4    chr1  108405682      108810474     NR_046653      VAV3-AS1
5    chr1  108405682      108810474     NR_107006       MIR7852
6   chr12   71450707       71565918     NM_004616        TSPAN8
7   chr14   61732173       61881163  NM_001017970       TMEM30B
8   chr14   61732173       61881163     NM_006255         PRKCH
9   chr16   68595776       68707206  NM_001305204         ZFP90
11  chr16   68595776       68707206  NM_001317195          CDH3
12   chr7  152290598      153542430     NM_005431         XRCC2
13   chr7  152290598      153542430     NM_020445        ACTR3B
14   chr7  152290598      153542430     NR_125776     LINC01287
15   chr9   41743125       42256469     NR_003670        FGF7P3
16   chr9   41743125       42256469     NR_015363         GLIDR
19   chr9   41743125       42256469     NR_126048  LOC102724238
20   chr9   41743125       42256469     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr16   61798029       61952125     NM_001796      CDH8
1   chr19   33147373       33374951  NM_001105570    NUDT19
2   chr19   33147373       33374951  NM_001110822    TDRD12
3   chr19   33147373       33374951     NM_014270    SLC7A9
4   chr19   33147373       33374951     NM_032139   ANKRD27
5   chr19   33147373       33374951     NM_032816     CEP89
6   chr19   33147373       33374951     NM_207391    RGS9BP
7    chr2  110193551      110302875  NM_001099289    SH3RF3
8    chr2  110193551      110302875  NM_001321504    SEPT10
10   chr3   60200661       60314018  NM_001320899      FHIT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87422317       87533186  NM_001134492        HS2ST1
2   chr17    5602636        5801399     NR_040000     LOC339166
3    chr9   44313923       44573984     NR_121564  LOC101927827
4    chr9   44313923       44573984     NR_126050  LOC103908605
5    chr9   67098758       67804472     NR_002817        AQP7P1
6    chr9   67098758       67804472     NR_027422        FAM27B
7    chr9   67098758       67804472     NR_103833       FAM27E3
8    chr9   67098758       67804472     NR_121606  LOC102723709
9    chr9   67098758       67804472     NR_136300  LOC102724580
10   chr9   67098758       67804472     NR_144466  LOC105379807,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr7  121637451      124321907  NM_001024613         FEZF1
1   chr7  121637451      124321907  NM_001136002      TMEM229A
2   chr7  121637451      124321907  NM_001174044         SPAM1
4   chr7  121637451      124321907  NM_001206838        PTPRZ1
5   chr7  121637451      124321907  NM_001282421        NDUFA5
7   chr7  121637451      124321907  NM_001290258         ASB15
9   chr7  121637451      124321907  NM_001321293          IQUB
10  chr7  121637451      124321907  NM_001324400       SLC13A1
12  chr7  121637451      124321907     NM_003941          WASL
13  chr7  121637451      124321907     NM_005763          AASS
14  chr7  121637451      124321907     NM_012269         HYAL4
15  chr7  121637451      124321907     NM_016945       TAS2R16
16  chr7  121637451      124321907     NM_017954        CADPS2
18  chr7  121637451      124321907     NM_139175        RNF133
20  chr7  121637451      124321907     NM_198085        RNF148
21  chr7  121637451      124321907     NM_207163         LMOD2
22  chr7  121637451      124321907     NR_002731        HYALP1
23  chr7  121637451      124321907     NR_036484     FEZF1-AS1
24  chr7  121637451      124321907     NR_110180  LOC101928211
25  chr7  121637451      124321907     NR_111922  LOC102724555
26  chr7  121637451      124321907     NR_125730        RNU6-2
27  chr7  121637451      124321907     NR_133947  LOC105375483,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10    2015121        2146568     NR_040253  LINC00700
1  chr10    2015121        2146568     NR_106720    MIR6072
2   chr2   39681104       39786808     NR_037875  LOC728730
3   chr8   57818484       57954521     NM_017813     IMPAD1
4   chr9   28567309       28734464  NM_001258282     LINGO2,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2  110216060      110563981  NM_001037866     RGPD6
1  chr2  110216060      110563981  NM_001099289    SH3RF3
3  chr2  110216060      110563981  NM_001321504    SEPT10
5  chr2  110216060      110563981     NM_005054     RGPD5
6  chr2  110216060      110563981     NM_023016    SOWAHC
7  chr3    6071122        6796453     NR_110123  GRM7-AS3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21505355       21610957  NM_001077180        METTL9
2   chr16   21505355       21610957     NR_002594      SLC7A5P2
3   chr16   21505355       21610957     NR_027155        SMG1P3
4   chr16   21505355       21610957     NR_049833     MIR3680-2
5   chr16   21505355       21610957     NR_110930  LOC101927814
6    chr2   97224105       97459599  NM_001115016        KANSL3
7    chr2   97224105       97459599  NM_001293083        FER1L5
8    chr2   97224105       97459599  NM_001322354        LMAN2L
9    chr2   97224105       97459599     NM_020184         CNNM4
12   chr7   64068761       64193549  NM_001282360        ZNF107
13   chr7   64068761       64193549     NR_077227  LOC100128885
15   chr7   64068761       64193549     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2   97286149       97467344  NM_001115016        KANSL3
1    chr2   97286149       97467344  NM_001293083        FER1L5
2    chr2   97286149       97467344  NM_001322354        LMAN2L
3    chr2   97286149       97467344     NM_020184         CNNM4
5    chr2   97286149       97467344     NR_036074       MIR3127
7   chr22   20145393       20394390  NM_001242313      TMEM191B
8   chr22   20145393       20394390     NM_023004         RTN4R
9   chr22   20145393       20394390     NM_033257        DGCR6L
10  chr22   20145393       20394390     NR_003563       PI4KAP1
11  chr22   20145393       20394390     NR_026919     LINC00896
12  chr22   20145393       20394390     NR_031618       MIR1286
13  chr22   20145393       20394390     NR_038460     LOC284865
14  chr22   20145393       20394390     NR_136560       FAM230A
15  chr22   20145393       20394390     NR_136572  LOC101927859
16   chr6  161774113      162083854     NM_013988         PARK2
17   chr6  161774113      162083854     NR_134594  LOC105378098
18   chr9   39003336       39107651     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   12232166       12334368     NM_032167         SNX29
1  chr22   20622348       20725317     NR_136569     LOC729461
2  chr22   20622348       20725317     NR_136572  LOC101927859
3   chr6  162868011      163099790     NM_013988         PARK2
4   chr7  110696514      110879060  NM_001099658         LRRN3
5   chr7  110696514      110879060  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   48327249       48453018  NM_001004702         OR4C3
1  chr11   48327249       48453018  NM_001004725         OR4S1
2  chr11   48327249       48453018  NM_001005513        OR4C45
3  chr12  130212803      130469244     NM_133448      TMEM132D
4   chr7  110649984      110795414  NM_001099658         LRRN3
5   chr7  110649984      110795414  NM_001244606        IMMP2L
7   chr9   67010115       67110896     NR_046175     LOC286297
8   chr9   67010115       67110896     NR_135597  LOC101928195
9   chr9   67010115       67110896     NR_136299  LOC101929583,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   37569583       37702423  NM_001171170      SLC25A21
1  chr14   37569583       37702423  NM_001195296        MIPOL1
2  chr14   37569583       37702423     NR_033240  SLC25A21-AS1
3  chr16   21702137       21814199  NM_001161683          OTOA
6  chr16   21702137       21814199     NR_003370        RRN3P1
7   chr3    1116706        1226907  NM_001289081         CNTN6,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   87702846       87829764  NM_001290053  LOC101927844
1   chr1   87702846       87829764     NM_006769          LMO4
2   chr1   87702846       87829764     NR_038324     LINC01364
3  chr11   95885195       96022582     NM_032427         MAML2
4  chr16    8602335        8780669  NM_001146336       TMEM114
6  chr16    8602335        8780669     NM_020686          ABAT
7  chr16    8602335        8780669     NM_024109       METTL22
8   chr7    3299288        3434014     NM_152744          SDK1,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr1  100025237      100144127  NM_017734     PALMD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72701719       72810786     NM_013381         TRHDE
1   chr15   30235519       30593273  NM_001282472       GOLGA8J
2   chr15   30235519       30593273  NM_001301025          TJP1
3   chr15   30235519       30593273     NR_026771  DKFZP434L187
4   chr15   30235519       30593273     NR_026859        ULK4P3
5   chr15   30235519       30593273     NR_033933       GOLGA8T
6   chr17   47817820       48064483  NM_001077503          TAC4
7   chr17   47817820       48064483  NM_001199158          KAT7
8   chr17   47817820       48064483  NM_001242791      FLJ45513
9   chr17   47817820       48064483     NM_001934          DLX4
10  chr17   47817820       48064483     NM_030802       FAM117A
12   chr8   97733628       97870030     NM_016134           CPQ
13   chr8  111809987      112007295     NR_125416     LINC01608,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12    1008345        1120362  NM_001297419     RAD52
4  chr12    1008345        1120362     NM_018979      WNK1
5  chr12    1008345        1120362     NR_027949      ERC1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11     703741         977463     NM_001004       RPLP2
1   chr11     703741         977463  NM_001025234      TSPAN4
4   chr11     703741         977463  NM_001039490       CD151
5   chr11     703741         977463  NM_001042463      TMEM80
6   chr11     703741         977463  NM_001142675       CHID1
7   chr11     703741         977463  NM_001191060    SLC25A22
10  chr11     703741         977463  NM_001286606     CRACR2B
11  chr11     703741         977463  NM_001293167       PANO1
12  chr11     703741         977463  NM_001318824       PDDC1
14  chr11     703741         977463     NM_006755      TALDO1
15  chr11     703741         977463     NM_012305       AP2A2
16  chr11     703741         977463     NM_016564       CEND1
17  chr11     703741         977463     NM_020376      PNPLA2
18  chr11     703741         977463     NM_021128      POLR2L
19  chr11     703741         977463     NM_022772      EPS8L2
22  chr11     703741         977463     NM_145886       PIDD1
23  chr11     703741         977463     NR_002585     SNORA52
24  chr11     703741         977463     NR_126342   LOC171391
25   chr4  136886996      138322486     NR_134640   LOC729307
26   chr6   65550251       66731158  NM_001142800         EYS
28   chr6   65550251       66731158  NM_001271675   LOC441155
30   chr6   65550251       66731158     NR_026540  SLC25A51P1,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr2   14120963       15137300  NM_001291410  LOC653602
1  chr2   14120963       15137300     NM_145175     FAM84A
2  chr2   14120963       15137300     NR_103814  LINC00276
3  chr3  162877218      163190845     NR_033945  LINC01192
4  chr4   69314521       69581544     NM_001076    UGT2B15
5  chr4   69314521       69581544     NM_001077    UGT2B17
6  chr4   69314521       69581544     NM_014058  TMPRSS11E,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr1  187126453      187266493  NR_126347     LINC01036
1  chr2   95445793       95584749  NM_144705         TEKT4
2  chr2   95445793       95584749  NR_003366    ANKRD20A8P
3  chr2   95445793       95584749  NR_037597     LOC442028
4  chr9   67051791       67400633  NR_002817        AQP7P1
5  chr9   67051791       67400633  NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   67990685       68090942  NM_001127384       CTNNA3
2   chr15   28661865       28790856     NR_033351      GOLGA8F
3   chr15   28661865       28790856     NR_033353      GOLGA8G
4   chr15   28661865       28790856     NR_039734    MIR4509-3
6    chr2  210225851      210390216  NM_001039538         MAP2
7   chr20   14797692       14983616     NM_080676      MACROD2
8   chr20   14797692       14983616     NR_037841  MACROD2-AS1
10   chr4   94173741       94967929     NM_001510        GRID2
11   chr4   94173741       94967929     NM_005172        ATOH1
12   chr5   93425281       93667681  NM_001145678     KIAA0825
13   chr5   93425281       93667681  NM_001163418      FAM172A,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  244962603      245299499  NM_001143943        EFCAB2
2   chr1  244962603      245299499  NM_001312871         COX20
4   chr1  244962603      245299499     NM_004501        HNRNPU
7   chr1  244962603      245299499     NR_111907  LOC101928068
8   chr1  244962603      245299499     NR_132782      SNORA100
9   chr5     116653         265728  NM_001080478       LRRC14B
10  chr5     116653         265728     NM_004168          SDHA
11  chr5     116653         265728     NM_052909      PLEKHG4B
12  chr5     116653         265728     NM_145265       CCDC127
13  chr6  162347053      163665565  NM_001080378         PACRG
15  chr6  162347053      163665565     NM_013988         PARK2
16  chr6  162347053      163665565     NR_110871     PACRG-AS2
18  chr6  162347053      163665565     NR_122120     PACRG-AS3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2  210230881      210418957  NM_001039538      MAP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  233751332      233904205     NM_002245         KCNK1
1    chr1  233751332      233904205     NR_039625       MIR4427
2   chr19     911834        2078032     NM_000156          GAMT
3   chr19     911834        2078032     NM_000455         STK11
4   chr19     911834        2078032  NM_001001975         ATP5D
5   chr19     911834        2078032     NM_001018         RPS15
6   chr19     911834        2078032  NM_001039848          GPX4
7   chr19     911834        2078032  NM_001080488       ONECUT3
8   chr19     911834        2078032  NM_001100122         SBNO2
9   chr19     911834        2078032  NM_001130111       ABHD17A
10  chr19     911834        2078032  NM_001136139          TCF3
11  chr19     911834        2078032  NM_001174118         MEX3D
12  chr19     911834        2078032  NM_001178002        ATP8B3
13  chr19     911834        2078032  NM_001243079          PLK5
14  chr19     911834        2078032  NM_001258328      ARHGAP45
15  chr19     911834        2078032     NM_001280         CIRBP
16  chr19     911834        2078032  NM_001281454          MBD3
22  chr19     911834        2078032  NM_001316323        POLR2E
23  chr19     911834        2078032     NM_001319       CSNK1G2
25  chr19     911834        2078032  NM_001329539        SCAMP4
26  chr19     911834        2078032     NM_001405         EFNA2
29  chr19     911834        2078032     NM_005224        ARID3A
30  chr19     911834        2078032     NM_005883          APC2
31  chr19     911834        2078032     NM_006830        UQCR11
34  chr19     911834        2078032     NM_017572         MKNK2
35  chr19     911834        2078032     NM_017573         PCSK4
36  chr19     911834        2078032     NM_017797         BTBD2
37  chr19     911834        2078032     NM_017914      C19orf24
38  chr19     911834        2078032     NM_019112         ABCA7
39  chr19     911834        2078032     NM_020695         REXO1
40  chr19     911834        2078032     NM_024100         WDR18
41  chr19     911834        2078032     NM_024407        NDUFS7
42  chr19     911834        2078032     NM_031918         KLF16
43  chr19     911834        2078032     NM_032551        KISS1R
44  chr19     911834        2078032     NM_032853          MUM1
45  chr19     911834        2078032     NM_033420       TMEM259
46  chr19     911834        2078032     NM_130807         MOB3A
47  chr19     911834        2078032     NM_138393         REEP6
48  chr19     911834        2078032     NM_138422         ADAT3
49  chr19     911834        2078032     NM_138690        GRIN3B
50  chr19     911834        2078032     NM_138774        R3HDM4
53  chr19     911834        2078032     NM_152482      C19orf25
54  chr19     911834        2078032     NM_152769         CBARP
55  chr19     911834        2078032     NM_170711        DAZAP1
56  chr19     911834        2078032     NM_177401          MIDN
57  chr19     911834        2078032     NM_201277          CNN2
58  chr19     911834        2078032     NM_213604      ADAMTSL5
61  chr19     911834        2078032     NR_027271     CIRBP-AS1
62  chr19     911834        2078032     NR_031730       MIR1909
63  chr19     911834        2078032     NR_033400   CSNK1G2-AS1
64  chr19     911834        2078032     NR_034114  LOC100288123
65  chr19     911834        2078032     NR_125730        RNU6-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145309901      145518568  NM_001039888      ANKRD34A
1    chr1  145309901      145518568  NM_001184795        PEX11B
2    chr1  145309901      145518568  NM_001277444         NBPF9
3    chr1  145309901      145518568  NM_001278267        NBPF20
4    chr1  145309901      145518568  NM_001302371        NBPF10
5    chr1  145309901      145518568  NM_001313972         TXNIP
7    chr1  145309901      145518568     NM_005105         RBM8A
9    chr1  145309901      145518568     NM_032305       POLR3GL
10   chr1  145309901      145518568     NM_145277          HFE2
11   chr1  145309901      145518568     NM_153713         LIX1L
12   chr1  145309901      145518568     NR_002328        GNRHR2
16   chr1  145309901      145518568     NR_104217       NBPF25P
17   chr1  145309901      145518568     NR_125967  LOC101928979
18  chr13   69509239       69805744     NR_125752     LINC00383,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12849184       12951894  NM_001009611       PRAMEF4
1    chr1   12849184       12951894  NM_001013631      HNRNPCL1
2    chr1   12849184       12951894  NM_001146181      HNRNPCL3
3    chr1   12849184       12951894  NM_001146344      PRAMEF11
4    chr1   12849184       12951894  NM_001294139       PRAMEF1
5    chr1   12849184       12951894  NM_001302551      HNRNPCL4
7    chr1   12849184       12951894     NM_023014       PRAMEF2
8   chr10    1501194        2014538     NM_018702        ADARB2
9   chr10    1501194        2014538     NR_033387    ADARB2-AS1
10  chr11   48415339       48732006  NM_001005512        OR4A47
11   chr3     660810         973146     NR_110118     LINC01266
12   chr4  169203675      172120136  NM_001012967        DDX60L
13   chr4  169203675      172120136  NM_001166108         PALLD
16   chr4  169203675      172120136  NM_001243372         CLCN3
18   chr4  169203675      172120136  NM_001286682         AADAT
21   chr4  169203675      172120136  NM_001301647        MFAP3L
23   chr4  169203675      172120136     NM_012224          NEK1
25   chr4  169203675      172120136     NM_017631         DDX60
26   chr4  169203675      172120136     NM_017867          HPF1
27   chr4  169203675      172120136     NM_020870        SH3RF1
28   chr4  169203675      172120136     NM_032783          CBR4
29   chr4  169203675      172120136     NR_037878  LOC100506085
30   chr4  169203675      172120136     NR_038838  LOC100506122
31   chr4  169203675      172120136     NR_106730       MIR6082
32   chr4  169203675      172120136     NR_125889     LINC01612
34   chr4  169203675      172120136     NR_134683  LOC100506107,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   46135424       46726653  NM_001278541       CPB2
1   chr13   46135424       46726653  NM_001286341      SPERT
3   chr13   46135424       46726653  NM_001330567     ZC3H13
4   chr13   46135424       46726653     NM_002298       LCP1
6   chr13   46135424       46726653     NM_182542    ERICH6B
7   chr13   46135424       46726653     NM_198849      SIAH3
8   chr13   46135424       46726653     NR_046227   CPB2-AS1
9   chr13   46135424       46726653     NR_125786  LINC01055
10  chr22   19906938       20008396     NM_000754       COMT
13  chr22   19906938       20008396  NM_001282512     TXNRD2
14  chr22   19906938       20008396  NM_001322174     TANGO2
15  chr22   19906938       20008396     NM_001670      ARVCF
18  chr22   19906938       20008396     NR_039918    MIR4761
19   chr6    1890965        2059251  NM_001253846       GMDS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   21309031       21443757  NM_001113434      C17orf51
1   chr17   21309031       21443757  NM_001194958        KCNJ18
2   chr17   21309031       21443757     NM_021012        KCNJ12
3    chr2   25235878       26204326  NM_001256304          DTNB
5    chr2   25235878       26204326  NM_001319099         EFR3B
6    chr2   25235878       26204326  NM_001319205          POMC
7    chr2   25235878       26204326  NM_001320892        DNMT3A
11   chr2   25235878       26204326     NM_002254         KIF3C
13   chr2   25235878       26204326     NM_018263         ASXL2
19   chr2   25235878       26204326     NR_031570       MIR1301
20   chr2   25235878       26204326     NR_034113   DNAJC27-AS1
21   chr2   25235878       26204326     NR_132378     LINC01381
22   chr2   78223853       78333161     NR_110287  LOC101927948
23   chr2   78223853       78333161     NR_110288  LOC101927967
24   chr4   80165493       80491152     NM_032693         NAA11
25   chr4   80165493       80491152     NM_033214           GK2
26   chr4   80165493       80491152     NR_038342     LINC01088
27   chr4   80165493       80491152     NR_038826     LINC00989,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr13   80841073       80954263  NM_001318536     SPRY2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   42199987       42352860  NM_001346175     LRFN5
1   chr2  110167421      110620132  NM_001037866     RGPD6
2   chr2  110167421      110620132  NM_001099289    SH3RF3
4   chr2  110167421      110620132  NM_001321504    SEPT10
6   chr2  110167421      110620132     NM_005054     RGPD5
7   chr2  110167421      110620132     NM_023016    SOWAHC,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   89114570       89233129  NM_001143837       NOX4
6   chr8    7047277        7153575     NR_027000  LINC00965,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr20    5155852        5333745     NM_003818      CDS2
1  chr20    5155852        5333745     NM_144773    PROKR2
2   chr6   65524165       65624439  NM_001142800       EYS
3   chr7  117591407      117839157     NM_016200      LSM8,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   76620874       76806242     NR_110934  LOC101928203
1  chr19   23461432       23767548  NM_001300951         ZNF91
2  chr19   23461432       23767548     NR_126448     LINC01224
3   chr9   41856204       42109453     NR_003670        FGF7P3
4   chr9   41856204       42109453     NR_015363         GLIDR
7   chr9   41856204       42109453     NR_126048  LOC102724238
8   chr9   41856204       42109453     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28787324       28900234     NR_036443       HERC2P9
1   chr21   23052760       23210724     NR_038872     LINC00317
2   chr21   23052760       23210724     NR_109958     LINC01425
3    chr4  169258718      169504604  NM_001012967        DDX60L
4    chr4  169258718      169504604  NM_001166108         PALLD
6    chr6   65548245       65691654  NM_001142800           EYS
7    chr9   67053434       68609675  NM_001012419     ANKRD20A3
8    chr9   67053434       68609675     NM_032250     ANKRD20A1
9    chr9   67053434       68609675     NR_002817        AQP7P1
10   chr9   67053434       68609675     NR_027422        FAM27B
11   chr9   67053434       68609675     NR_033907        FRG1JP
12   chr9   67053434       68609675     NR_039689      MIR4477B
13   chr9   67053434       68609675     NR_103833       FAM27E3
14   chr9   67053434       68609675     NR_121606  LOC102723709
15   chr9   67053434       68609675     NR_136300  LOC102724580
16   chr9   67053434       68609675     NR_144466  LOC105379807, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28811383       28914932     NR_036443       HERC2P9
1   chr18   63142287       63523093  NM_001317214          CDH7
4    chr2     921920        1154290     NM_018968         SNTG2
5    chr2     921920        1154290     NR_136151  LOC101060391
6    chr3     855643         974387     NR_110118     LINC01266
7    chr7   64066193       64441423  NM_001160183        ZNF138
8    chr7   64066193       64441423  NM_001282360        ZNF107
9    chr7   64066193       64441423     NM_015852        ZNF117
10   chr7   64066193       64441423     NM_021148        ZNF273
12   chr7   64066193       64441423     NR_077227  LOC100128885
14   chr7   64066193       64441423     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   25286836       26605348  NM_001135092         MUC15
1   chr11   25286836       26605348  NM_001313726          ANO3
4   chr11   25286836       26605348     NR_132968  LOC105376599
5   chr15   58901046       59569021  NM_001040450        FAM63B
7   chr15   58901046       59569021     NM_001110        ADAM10
8   chr15   58901046       59569021  NM_001270530        RNF111
10  chr15   58901046       59569021     NM_004701         CCNB2
11  chr15   58901046       59569021     NM_004998         MYO1E
13  chr15   58901046       59569021     NM_033195       LDHAL6B
14  chr15   58901046       59569021     NR_031750       MIR2116
15  chr15   58901046       59569021     NR_073415     HSP90AB4P
16  chr15   58901046       59569021     NR_135043          SLTM
17  chr15   58901046       59569021     NR_135474  LOC101928725
18  chr16    8618077        9464007     NM_000303          PMM2
19  chr16    8618077        9464007     NM_000663          ABAT
20  chr16    8618077        9464007  NM_001042476       CARHSP1
22  chr16    8618077        9464007  NM_001146336       TMEM114
27  chr16    8618077        9464007  NM_001286457          USP7
31  chr16    8618077        9464007     NM_014117      C16orf72
33  chr16    8618077        9464007     NM_015421       TMEM186
35  chr16    8618077        9464007     NM_024109       METTL22
36  chr16    8618077        9464007     NR_135195  LOC101927009
38  chr22   20079988       20215238  NM_001190326         DGCR8
39  chr22   20079988       20215238  NM_001243537       CCDC188
40  chr22   20079988       20215238  NM_001278639        RANBP1
43  chr22   20079988       20215238     NM_013373        ZDHHC8
44  chr22   20079988       20215238     NM_022727        TRMT2A
45  chr22   20079988       20215238     NR_026919     LINC00896
46  chr22   20079988       20215238     NR_038460     LOC284865
47  chr22   20079988       20215238     NR_106874       MIR6816,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   30246832       30384730     NM_000510      FSHB
1  chr11   30246832       30384730     NM_152316   ARL14EP
2   chr4  169209317      169322200  NM_001012967    DDX60L
4   chr4  169209317      169322200     NM_017631     DDX60
5   chr6   94314449       94427748     NR_015362      TSG1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr6  162760003      164245188  NM_001080378         PACRG
2   chr6  162760003      164245188     NM_006775           QKI
3   chr6  162760003      164245188     NM_013988         PARK2
4   chr6  162760003      164245188     NR_028390     PACRG-AS1
5   chr6  162760003      164245188     NR_033862  DKFZp451B082
6   chr6  162760003      164245188     NR_037593          CAHM
7   chr6  162760003      164245188     NR_110871     PACRG-AS2
9   chr6  162760003      164245188     NR_122120     PACRG-AS3
10  chr6  162760003      164245188     NR_134620  LOC102724152,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1  142534200      142736715     NR_046228  ANKRD20A12P
1  chr12   81001793       81218557  NM_001145026        PTPRQ
2  chr12   81001793       81218557  NM_001324423        LIN7A
3  chr12   81001793       81218557     NM_002469         MYF6
4  chr12   81001793       81218557     NM_005593         MYF5
5  chr12   81001793       81218557     NR_120468    LINC01490
6   chr7  108447478      108571420  NM_001024607      C7orf66,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  100032439      100429659     NM_000028        AGL
3   chr1  100032439      100429659  NM_001013660      FRRS1
4   chr1  100032439      100429659     NM_017734      PALMD
5   chr1  100032439      100429659     NR_037516  MIR548AA1
6   chr3  162891236      163235843     NR_033945  LINC01192
7   chr5     114235         226660  NM_001080478    LRRC14B
8   chr5     114235         226660     NM_004168       SDHA
9   chr5     114235         226660     NM_052909   PLEKHG4B
10  chr5     114235         226660     NM_145265    CCDC127,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   12827778       13025313  NM_001009611    PRAMEF4
1   chr1   12827778       13025313  NM_001010889    PRAMEF6
2   chr1   12827778       13025313  NM_001010890    PRAMEF9
3   chr1   12827778       13025313  NM_001012276    PRAMEF8
4   chr1   12827778       13025313  NM_001013631   HNRNPCL1
5   chr1   12827778       13025313  NM_001080830   PRAMEF12
6   chr1   12827778       13025313  NM_001146181   HNRNPCL3
7   chr1   12827778       13025313  NM_001146344   PRAMEF11
8   chr1   12827778       13025313  NM_001294139    PRAMEF1
9   chr1   12827778       13025313  NM_001302551   HNRNPCL4
11  chr1   12827778       13025313     NM_023014    PRAMEF2
12  chr4   69237956       69344129     NM_014058  TMPRSS11E
13  chr5   26891661       26997411     NM_016279       CDH9
14  chr6   94291504       94506691     NR_015362       TSG1,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr15   43916686       44342566  NM_001018108           SERF2
1   chr15   43916686       44342566  NM_001167941           WDR76
5   chr15   43916686       44342566  NM_001199885            HYPK
6   chr15   43916686       44342566  NM_001258031         SERINC4
7   chr15   43916686       44342566  NM_001282309        CATSPER2
8   chr15   43916686       44342566  NM_001286490           FRMD5
10  chr15   43916686       44342566  NM_001321927          CKMT1A
13  chr15   43916686       44342566     NM_005313           PDIA3
14  chr15   43916686       44342566     NM_005926           MFAP1
15  chr15   43916686       44342566     NM_025165            ELL3
17  chr15   43916686       44342566     NR_002318      CATSPER2P1
18  chr15   43916686       44342566     NR_003571          PIN4P1
19  chr15   43916686       44342566     NR_031695         MIR1282
20  chr15   43916686       44342566     NR_037673  SERF2-C15ORF63
23  chr16   21499442       22003427  NM_001077180          METTL9
24  chr16   21499442       22003427  NM_001161683            OTOA
26  chr16   21499442       22003427  NM_001310148          NPIPB4
27  chr16   21499442       22003427     NM_003366          UQCRC2
28  chr16   21499442       22003427     NM_005849           IGSF6
31  chr16   21499442       22003427     NM_173806           PDZD9
32  chr16   21499442       22003427     NR_002594        SLC7A5P2
33  chr16   21499442       22003427     NR_003370          RRN3P1
34  chr16   21499442       22003427     NR_027155          SMG1P3
35  chr16   21499442       22003427     NR_049833       MIR3680-2
36  chr16   21499442       22003427     NR_110930    LOC101927814
37  chr18    8056647        8227860     NM_002845           PTPRM
38   chr2   97245486       97390378  NM_001115016          KANSL3
39   chr2   97245486       97390378  NM_001293083          FER1L5
40   chr2   97245486       97390378  NM_001322354          LMAN2L, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   21545402       21677827  NM_001077180        METTL9
2  chr16   21545402       21677827     NM_005849         IGSF6
3  chr16   21545402       21677827     NR_110930  LOC101927814,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   83695768       84047883  NM_001142699      DLG2
4   chr6  162539479      163331121  NM_001080378     PACRG
6   chr6  162539479      163331121     NM_013988     PARK2
7   chr7   94228673       94453576  NM_001184962     PEG10
8   chr7   94228673       94453576  NM_001301139      SGCE
9   chr9  102126111      102282609     NR_102270      NAMA,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   82247893       82673773  NM_001297704     ADGRL2
2   chr11   67279812       67525549     NM_000695    ALDH3B2
3   chr11   67279812       67525549     NM_000852      GSTP1
5   chr11   67279812       67525549  NM_001166102     NDUFV1
6   chr11   67279812       67525549  NM_001243750      NUDT8
7   chr11   67279812       67525549  NM_001318496      CABP2
8   chr11   67279812       67525549     NM_005995      TBX10
9   chr11   67279812       67525549     NM_080658       ACY3
11  chr11   67279812       67525549     NR_033791     DOC2GP
12  chr11   67279812       67525549     NR_130935   C11orf72
13  chr17   48009832       48195200  NM_001199898       PDK2
16  chr17   48009832       48195200  NM_001257359     SAMD14
17  chr17   48009832       48195200     NM_001934       DLX4
18  chr17   48009832       48195200     NM_002204      ITGA3
20  chr17   48009832       48195200     NM_005220       DLX3
22  chr17   48009832       48195200     NR_038230  LOC284080
23   chr4     468164         636450     NM_000283      PDE6B
24   chr4     468164         636450  NM_001289053       PIGG
25   chr4     468164         636450     NM_133474     ZNF721
28   chr7   64162274       64267068  NM_001160183     ZNF138
29   chr7   64162274       64267068  NM_001282360     ZNF107,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr13   95277875       95405900     NM_007084         SOX21
1  chr13   95277875       95405900     NM_180989        GPR180
2  chr13   95277875       95405900     NR_046514     SOX21-AS1
3  chr13   95277875       95405900     NR_120417  LOC101927248
4   chr3   17297451       17490904  NM_001134381        TBC1D5
6   chr9     519111         705555  NM_001256876         KANK1
8   chr9   38952674       39132022     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr21   30161309       30262767  NM_013240    N6AMT1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145341951      145594865  NM_001012758        NUDT17
1    chr1  145341951      145594865  NM_001039888      ANKRD34A
2    chr1  145341951      145594865  NM_001184795        PEX11B
3    chr1  145341951      145594865  NM_001277444         NBPF9
4    chr1  145341951      145594865  NM_001278267        NBPF20
5    chr1  145341951      145594865  NM_001280799       ANKRD35
6    chr1  145341951      145594865  NM_001302371        NBPF10
7    chr1  145341951      145594865  NM_001303040        ITGA10
8    chr1  145341951      145594865  NM_001303456        POLR3C
9    chr1  145341951      145594865  NM_001313972         TXNIP
11   chr1  145341951      145594865     NM_005105         RBM8A
12   chr1  145341951      145594865     NM_006099         PIAS3
15   chr1  145341951      145594865     NM_032305       POLR3GL
16   chr1  145341951      145594865     NM_145277          HFE2
17   chr1  145341951      145594865     NM_153713         LIX1L
18   chr1  145341951      145594865     NR_002328        GNRHR2
22   chr1  145341951      145594865     NR_104217       NBPF25P
23   chr1  145341951      145594865     NR_106794       MIR6736
24   chr1  145341951      145594865     NR_125967  LOC101928979
25  chr18   67791461       67905828  NM_001318520          RTTN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108447851      108559363     NM_006113          VAV3
1    chr1  108447851      108559363     NR_046653      VAV3-AS1
2   chr10   68129324       68464497  NM_001127384        CTNNA3
4   chr15   28616703       28808657     NR_033351       GOLGA8F
6   chr15   28616703       28808657     NR_033353       GOLGA8G
8   chr15   28616703       28808657     NR_039734     MIR4509-3
10  chr16    8637577        9307107     NM_000303          PMM2
11  chr16    8637577        9307107     NM_000663          ABAT
12  chr16    8637577        9307107  NM_001042476       CARHSP1
18  chr16    8637577        9307107  NM_001286457          USP7
21  chr16    8637577        9307107     NM_014117      C16orf72
23  chr16    8637577        9307107     NM_015421       TMEM186
25  chr16    8637577        9307107     NM_024109       METTL22
27  chr22   20060251       20333105  NM_001190326         DGCR8
28  chr22   20060251       20333105  NM_001243537       CCDC188
29  chr22   20060251       20333105  NM_001278639        RANBP1
32  chr22   20060251       20333105     NM_013373        ZDHHC8
33  chr22   20060251       20333105     NM_022727        TRMT2A
34  chr22   20060251       20333105     NM_023004         RTN4R
35  chr22   20060251       20333105     NM_033257        DGCR6L
36  chr22   20060251       20333105     NR_026919     LINC00896
37  chr22   20060251       20333105     NR_031618       MIR1286
38  chr22   20060251       20333105     NR_031706       MIR1306
39  chr22   20060251       20333105     NR_037412       MIR3618
40  chr22   20060251       20333105     NR_038460     LOC284865
41  chr22   20060251       20333105     NR_106874       MIR6816
42  chr22   20060251       20333105     NR_136572  LOC101927859
43   chr4  169193583      169414140  NM_001012967        DDX60L
45   chr4  169193583      169414140     NM_017631         DDX60
46   chr7   64075176       64231185  NM_001282360        ZNF107
47   chr7   64075176       64231185     NR_077227  LOC100128885
49   chr7   64075176       64231185     NR_106898       MIR6839
50   chr7  108470564      108686397  NM_001024607       C7orf66
51   chr9   28201462       28436147  NM_001258282        LINGO2
53   chr9   39096602       39208627     NM_033655       CNTNAP3
54   chr9   39038843       39190259     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr17   21223823       21493126  NM_001113434     C17orf51
1  chr17   21223823       21493126  NM_001194958       KCNJ18
2  chr17   21223823       21493126     NM_021012       KCNJ12
3  chr20   14783351       14936362     NM_080676      MACROD2
4  chr20   14783351       14936362     NR_037841  MACROD2-AS1
6   chr4   93269631       93536700     NM_001510        GRID2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   88009365       88448946     NM_015567    SLITRK5
1   chr13   88009365       88448946     NR_033829  MIR4500HG
2   chr13   88009365       88448946     NR_039722    MIR4500
3   chr20   14706923       14814671     NM_080676    MACROD2
4    chr6   94346019       94460271     NR_015362       TSG1
5    chr7   64108423       65956313     NM_000048        ASL
6    chr7   64108423       65956313     NM_000181       GUSB
7    chr7   64108423       65956313  NM_001007253     ERV3-1
9    chr7   64108423       65956313  NM_001160183     ZNF138
10   chr7   64108423       65956313  NM_001282360     ZNF107
11   chr7   64108423       65956313  NM_001287532      ZNF92
13   chr7   64108423       65956313     NM_003596      TPST1
14   chr7   64108423       65956313     NM_015852     ZNF117
15   chr7   64108423       65956313     NM_021148     ZNF273
16   chr7   64108423       65956313     NM_173517   VKORC1L1
17   chr7   64108423       65956313     NR_002961    SNORA22
18   chr7   64108423       65956313     NR_003110     CCT6P1
19   chr7   64108423       65956313     NR_024548       CRCP
20   chr7   64108423       65956313     NR_026873  LINC00174
21   chr7   64108423       65956313     NR_027392    INTS4P2
22   chr7   64108423       65956313     NR_033416     CCT6P3
23   chr7   64108423       65956313     NR_038378  LOC441242
27   chr7   64108423       65956313     NR_106898    MIR6839
28   chr9    6014316        6149634  NM_001243202     RANBP6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   55819655       55924339  NM_001142770        PCDH15
3    chr5   17679947       17854944     NR_134286     LOC646241
5    chr6  128616509      131089957  NM_001007102       L3MBTL3
6    chr6  128616509      131089957  NM_001010876       TMEM244
7    chr6  128616509      131089957  NM_001017373         SAMD3
8    chr6  128616509      131089957  NM_001079823         LAMA2
10   chr6  128616509      131089957  NM_001258276      TMEM200A
13   chr6  128616509      131089957  NM_001291982         PTPRK
17   chr6  128616509      131089957     NM_033515      ARHGAP18
19   chr7      56558         227031     NM_020223        FAM20C
20   chr7      56558         227031     NR_108065  LOC100507642
21   chr7      56558         227031     NR_134324  LOC105375115
22   chr7      56558         227031     NR_134325  LOC102723672
23   chr8   97749881       97896360     NM_016134           CPQ, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  108384587      108658000     NM_006113      VAV3
1    chr1  108384587      108658000     NR_046653  VAV3-AS1
2    chr1  108384587      108658000     NR_107006   MIR7852
3   chr12     981458        1118091  NM_001297419     RAD52
7   chr12     981458        1118091     NM_018979      WNK1
8   chr12     981458        1118091     NR_027949      ERC1
9    chr3  163648968      163934934     NR_031665   MIR1263
10   chr7  146013384      146156852     NM_014141   CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   86021411       86273742     NR_046989     LINC00351
1    chr2   34232330       34398230     NR_126403     LINC01317
2    chr2   34232330       34398230     NR_132381     LINC01318
3    chr7  142989022      143364363     NM_000083         CLCN1
4    chr7  142989022      143364363  NM_001008747       CTAGE15
5    chr7  142989022      143364363  NM_001130025         TCAF2
6    chr7  142989022      143364363     NM_001224         CASP2
7    chr7  142989022      143364363  NM_001278297       FAM131B
8    chr7  142989022      143364363  NM_001322263  LOC100507507
9    chr7  142989022      143364363     NM_003461           ZYX
10   chr7  142989022      143364363     NM_005232         EPHA1
14   chr7  142989022      143364363     NM_176883       TAS2R41
15   chr7  142989022      143364363     NM_177437       TAS2R60
16   chr7  142989022      143364363     NR_033897     EPHA1-AS1
17   chr7  142989022      143364363     NR_106952       MIR6892
18   chr7  142989022      143364363     NR_110549       TCAF2P1,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr3  162858980      162972311  NR_033945  LINC01192,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67853877       68110050  NM_001127384        CTNNA3
2   chr11   48344056       48488934  NM_001004702         OR4C3
3   chr11   48344056       48488934  NM_001005513        OR4C45
4    chr7   75813331       76479152  NM_001102594          DTX2
6    chr7   75813331       76479152  NM_001110199         SRRM3
7    chr7   75813331       76479152  NM_001110354           ZP3
8    chr7   75813331       76479152     NM_001540         HSPB1
10   chr7   75813331       76479152     NM_012479         YWHAG
11   chr7   75813331       76479152     NM_030570         UPK3B
12   chr7   75813331       76479152     NM_080744         SSC4D
13   chr7   75813331       76479152     NM_152992        POMZP3
14   chr7   75813331       76479152     NR_003262        FDPSP2
15   chr7   75813331       76479152     NR_029411  LOC100133091
16   chr9   67120990       68287188  NM_001012419     ANKRD20A3
17   chr9   67120990       68287188     NM_032250     ANKRD20A1
18   chr9   67120990       68287188     NR_002817        AQP7P1
19   chr9   67120990       68287188     NR_027422        FAM27B
20   chr9   67120990       68287188     NR_103833       FAM27E3
21   chr9   67120990       68287188     NR_121606  LOC102723709
22   chr9   67120990       68287188     NR_136300  LOC102724580
23   chr9   67120990       68287188     NR_144466  LOC105379807
24   chr9   80091010       80195683     NM_004297         GNA14
25   chr9   80091010       80195683     NR_121184     GNA14-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12845638       13139539  NM_001009611    PRAMEF4
1    chr1   12845638       13139539  NM_001010889    PRAMEF6
2    chr1   12845638       13139539  NM_001010890    PRAMEF9
3    chr1   12845638       13139539  NM_001012276    PRAMEF8
4    chr1   12845638       13139539  NM_001013407    PRAMEF5
5    chr1   12845638       13139539  NM_001013631   HNRNPCL1
6    chr1   12845638       13139539  NM_001099850   PRAMEF18
7    chr1   12845638       13139539  NM_001100631   PRAMEF22
8    chr1   12845638       13139539  NM_001146181   HNRNPCL3
9    chr1   12845638       13139539  NM_001146344   PRAMEF11
10   chr1   12845638       13139539  NM_001294139    PRAMEF1
11   chr1   12845638       13139539  NM_001302551   HNRNPCL4
12   chr1   12845638       13139539  NM_001306072   PRAMEF26
13   chr1   12845638       13139539  NM_001310134   PRAMEF25
15   chr1   12845638       13139539     NM_023014    PRAMEF2
16  chr13   31425315       31569950     NM_032849      MEDAG
17  chr13   31425315       31569950     NM_152325      TEX26
18  chr13   31425315       31569950     NR_038287  TEX26-AS1
20  chr13   31425315       31569950     NR_103813  LINC00545
21  chr16   68560639       68779760  NM_001305204      ZFP90
23  chr16   68560639       68779760  NM_001317184       CDH1
24  chr16   68560639       68779760  NM_001317195       CDH3
25  chr16   68560639       68779760     NR_106988  MIR7641-2
26  chr19   21447119       21875666  NM_001001415     ZNF429
27  chr19   21447119       21875666  NM_001297560     ZNF708
30  chr19   21447119       21875666     NM_145326     ZNF493
32  chr19   21447119       21875666     NR_027130     ZNF738
33  chr19   21447119       21875666     NR_037194  LINC00664
34   chr5  110315070      110479156     NM_033035       TSLP
36   chr5  110315070      110479156     NM_139281      WDR36,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   79008194       79232293     NM_006417        IFI44
1    chr1   79008194       79232293     NM_006820       IFI44L
3   chr10   81440005       81727722  NM_001278495       NUTM2B
4   chr10   81440005       81727722     NM_003019        SFTPD
5   chr10   81440005       81727722     NR_002724        MBL1P
6   chr10   81440005       81727722     NR_027512      BEND3P3
7   chr10   81440005       81727722     NR_029407    LOC642361
8   chr10   81440005       81727722     NR_033857      BMS1P21
9   chr10   81440005       81727722     NR_120611   NUTM2B-AS1
12  chr11   67337841       67474274     NM_000695      ALDH3B2
13  chr11   67337841       67474274     NM_000852        GSTP1
15  chr11   67337841       67474274  NM_001166102       NDUFV1
16  chr11   67337841       67474274  NM_001243750        NUDT8
17  chr11   67337841       67474274     NM_005995        TBX10
18  chr11   67337841       67474274     NM_080658         ACY3
20  chr11   67337841       67474274     NR_033791       DOC2GP
21  chr11   67337841       67474274     NR_130935     C11orf72
22  chr20   14650076       14905045     NM_080676      MACROD2
23  chr20   14650076       14905045     NR_037841  MACROD2-AS1
25   chr4  167635963      167747475  NM_001204353       SPOCK3
28   chr5   17739875       17867250     NR_134286    LOC646241
30   chr6    5103899        5204016  NM_001164840        LYRM4
33   chr6    5103899        5204016     NR_037462      MIR3691
34   chr6    5103899        5204016     NR_126015    LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   28385163       28598274     NM_000086          CLN3
2   chr16   28385163       28598274  NM_001042483         NUPR1
3   chr16   28385163       28598274  NM_001199142         EIF3C
8   chr16   28385163       28598274  NM_001317857        EIF3CL
9   chr16   28385163       28598274     NM_018690         APOBR
10  chr16   28385163       28598274     NM_138414         SGF29
11  chr16   28385163       28598274     NM_145659          IL27
12  chr16   28385163       28598274     NR_107058     MIR6862-2
13  chr18   67130299       67534517  NM_001303618         CD226
15  chr18   67130299       67534517     NM_152721          DOK6
16  chr18   67130299       67534517     NR_134579  LOC105372179
17  chr20   14806986       15053877     NM_080676       MACROD2
18  chr20   14806986       15053877     NR_037841   MACROD2-AS1
20   chr9  102039880      102209950     NR_102270          NAMA,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   47910055       48145193  NM_001113498      MDGA2
1    chr2   69627143       69793011     NM_014911       AAK1
2    chr2   69627143       69793011     NM_015700       NFU1
3    chr2   69627143       69793011     NR_003705   SNORA36C
4    chr7   75039183       75161380  NM_001099415    POM121C
5    chr7   75039183       75161380  NM_001306141     SPDYE5
6    chr7   75039183       75161380     NR_028059     PMS2P3
7    chr7   75039183       75161380     NR_033322    NSUN5P1
8    chr9   43069890       43217289  NM_001012419  ANKRD20A3
9    chr9   43069890       43217289  NM_001012421  ANKRD20A2
10   chr9   43069890       43217289     NR_027472  LOC642929,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr20   14705867       15330428  NM_001033087      MACROD2
2   chr20   14705867       15330428     NR_037841  MACROD2-AS1
4    chr5      94089         222096  NM_001080478      LRRC14B
5    chr5      94089         222096     NM_004168         SDHA
6    chr5      94089         222096     NM_052909     PLEKHG4B
7    chr5      94089         222096     NM_145265      CCDC127
8    chr5  119896116      120009026  NM_001300783        PRR16
11   chr7    3307255        3436291     NM_152744         SDK1
12   chr7   64081424       64386508  NM_001160183       ZNF138
13   chr7   64081424       64386508  NM_001282360       ZNF107
14   chr7   64081424       64386508     NM_021148       ZNF273
17   chr7   64081424       64386508     NR_106898      MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10    7101573        8026798  NM_001001851     ITIH5
1   chr10    7101573        8026798  NM_001018039    SFMBT2
3   chr10    7101573        8026798  NM_001320886    ATP5C1
4   chr10    7101573        8026798     NM_002216     ITIH2
5   chr10    7101573        8026798     NM_012311       KIN
7   chr10    7101573        8026798     NM_031923      TAF3
9   chr10    7101573        8026798     NR_132972  SNORD129
10   chr6  162470264      162627582     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   67219828       67334837  NM_001078650    TMEM134
1   chr11   67219828       67334837  NM_001300895      CABP4
3   chr11   67219828       67334837  NM_001302959        AIP
4   chr11   67219828       67334837  NM_001318496      CABP2
6   chr11   67219828       67334837     NM_004910    PITPNM1
7   chr11   67219828       67334837     NM_005851    CDK2AP2
9   chr11   67219828       67334837     NM_206997     GPR152
11  chr11   67219828       67334837     NR_106810    MIR6752
12  chr15   21133960       21419753     NR_028506      NF1P2
13  chr15   21133960       21419753     NR_040094  LINC01193
14  chr15   21133960       21419753     NR_049895  MIR5701-2
15  chr16   21469997       21573264     NR_002594   SLC7A5P2
16  chr16   21469997       21573264     NR_027155     SMG1P3
17  chr16   21469997       21573264     NR_049833  MIR3680-2
18   chr9   17173052       17285588  NM_001114395      CNTLN,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10    7158467        7264923  NM_001018039     SFMBT2
2  chr10    7158467        7264923     NR_132972   SNORD129
3  chr11   48292964       48561080  NM_001004702      OR4C3
4  chr11   48292964       48561080  NM_001004725      OR4S1
5  chr11   48292964       48561080  NM_001005512     OR4A47
6  chr11   48292964       48561080  NM_001005513     OR4C45
7  chr14   45442042       45544902  NM_001308120    FAM179B
8   chr3     834367        1284637  NM_001289081      CNTN6
9   chr3     834367        1284637     NR_110118  LINC01266,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   27217296       27442214  NM_001080406   C12orf71
1   chr12   27217296       27442214     NM_015000     STK38L
2   chr15  100170344      100910465  NM_001130928      MEF2A
3   chr15  100170344      100910465  NM_001284417     LYSMD4
6   chr15  100170344      100910465     NM_139057   ADAMTS17
7   chr15  100170344      100910465     NR_003260    DNM1P46
8   chr15  100170344      100910465     NR_028139    SPATA41
10  chr15  100170344      100910465     NR_135737  LOC400464,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr16    6418952        6874957  NM_001142334       RBFOX1
3   chr19   47829059       48450578     NM_000554          CRX
4   chr19   47829059       48450578  NM_001009813        MEIS3
5   chr19   47829059       48450578  NM_001271749        C5AR2
7   chr19   47829059       48450578  NM_001277075       ZNF541
8   chr19   47829059       48450578  NM_001291296         KPTN
11  chr19   47829059       48450578     NM_003009      SELENOW
12  chr19   47829059       48450578     NM_003167      SULT2A1
13  chr19   47829059       48450578     NM_014601         EHD2
14  chr19   47829059       48450578     NM_014681        DHX34
15  chr19   47829059       48450578     NM_015063       SLC8A2
16  chr19   47829059       48450578     NM_015710      GLTSCR2
17  chr19   47829059       48450578     NM_015711      GLTSCR1
19  chr19   47829059       48450578     NM_198479        TPRX1
20  chr19   47829059       48450578     NR_003048      SNORD23
21  chr19   47829059       48450578     NR_004435      SNAR-A1
23  chr19   47829059       48450578     NR_004437     SNAR-A12
25  chr19   47829059       48450578     NR_024214      SNAR-A3
26  chr19   47829059       48450578     NR_024217      SNAR-C2
28  chr19   47829059       48450578     NR_024218      SNAR-C4
29  chr19   47829059       48450578     NR_038452     NAPA-AS1
30  chr19   47829059       48450578     NR_038457         NAPA
31  chr19   47829059       48450578     NR_132382  GLTSCR2-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12   41725031       41885342  NM_001164595        PDZRN4
2  chr12   72582002       72700251     NM_013381         TRHDE
3  chr12   72582002       72700251     NR_026836     TRHDE-AS1
5   chr5   99687405       99812226     NR_027503  LOC100133050
6   chr7  110644311      110769607  NM_001099658         LRRN3
7   chr7  110644311      110769607  NM_001244606        IMMP2L
9   chr7  145999260      146125305     NM_014141       CNTNAP2,   chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr3  155973162      156176181  NM_001308217      KCNAB1
5  chr3  155973162      156176181     NR_046618  KCNAB1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145121446      145301469  NM_001277444         NBPF9
1    chr1  145121446      145301469  NM_001278267        NBPF20
2    chr1  145121446      145301469  NM_001302371        NBPF10
3    chr1  145121446      145301469     NM_203458      NOTCH2NL
4    chr1  145121446      145301469     NR_104217       NBPF25P
5   chr13   19674431       20264470  NM_001271850         TPTE2
6   chr13   19674431       20264470     NM_006001        TUBA3C
7   chr13   19674431       20264470     NM_017520      MPHOSPH8
9   chr13   19674431       20264470     NR_003272         PSPC1
10  chr13   19674431       20264470     NR_027248     ANKRD26P3
11  chr13   19674431       20264470     NR_034026     LINC00421
12  chr13   19674431       20264470     NR_046988     LINC00350
15  chr13   19674431       20264470     NR_126054  LOC101928697
16  chr14   80049626       80155545  NM_001272020         NRXN3
19  chr21   13415794       14851284     NR_026916    ANKRD30BP2
20  chr21   13415794       14851284     NR_036164     MIR3156-3
21   chr7   64056298       64160678  NM_001282360        ZNF107
22   chr7   64056298       64160678     NR_077227  LOC100128885
24   chr7   64056298       64160678     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67732638       67885098  NM_001127384    CTNNA3,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   28538473       28641633  NM_004667     HERC2
1  chr15   28538473       28641633  NR_033351   GOLGA8F
2  chr15   28538473       28641633  NR_033353   GOLGA8G,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  153021146      153324581     NM_000427           LOR
1    chr1  153021146      153324581  NM_001010857         LELP1
2    chr1  153021146      153324581  NM_001014291        SPRR2G
3    chr1  153021146      153324581  NM_001014450        SPRR2F
4    chr1  153021146      153324581  NM_001017418        SPRR2B
5    chr1  153021146      153324581  NM_001024209        SPRR2E
6    chr1  153021146      153324581  NM_001195571          PRR9
7    chr1  153021146      153324581     NM_005988        SPRR2A
8    chr1  153021146      153324581     NM_020393       PGLYRP4
9    chr1  153021146      153324581     NM_052891       PGLYRP3
10   chr1  153021146      153324581     NR_003062        SPRR2C
11   chr1  153021146      153324581     NR_110685  LOC101928009
12  chr11  134152183      134382132  NM_001080407        GLB1L3
13  chr11  134152183      134382132     NM_054025        B3GAT1
14  chr11  134152183      134382132     NM_138342        GLB1L2
15  chr11  134152183      134382132     NR_033852     LOC283177
16  chr17   70932698       71033824     NM_139177      SLC39A11
17   chr2   25001404       25114141  NM_001013663        PTRHD1
18   chr2   25001404       25114141  NM_001320613         ADCY3
19   chr2   25001404       25114141  NM_001322101         CENPO
20   chr5     127483         609653  NM_001080478       LRRC14B
21   chr5     127483         609653  NM_001242412          AHRR
22   chr5     127483         609653  NM_001284351        SLC9A3
23   chr5     127483         609653     NM_004168          SDHA
24   chr5     127483         609653     NM_007277         EXOC3
25   chr5     127483         609653     NM_013232         PDCD6
26   chr5     127483         609653     NM_052909      PLEKHG4B
27   chr5     127483         609653     NM_145265       CCDC127
28   chr5     127483         609653     NR_024158        PP7080
29   chr5     127483         609653     NR_039661       MIR4456
31   chr5     127483         609653     NR_103444  LOC100996325
32   chr5     127483         609653     NR_104613         HRAT5
33   chr5     127483         609653     NR_125375  LOC100288152
34   chr5     127483         609653     NR_126522     EXOC3-AS1
35   chr6  162576854      162692949     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   80953017       81089650  NM_001145026      PTPRQ
1    chr2  212915645      213118450  NM_001042599      ERBB4
2   chr21   17846210       17998727     NR_027790   MIR99AHG
4   chr21   17846210       17998727     NR_029480   MIRLET7C
5   chr21   17846210       17998727     NR_029514     MIR99A
6   chr21   17846210       17998727     NR_029694   MIR125B2
15  chr22   16975460       17105467     NM_014406     CCT8L2
16  chr22   16975460       17105467     NR_001591     TPTEP1
17   chr9   39103533       39566393  NM_001085452  SPATA31A1
18   chr9   39103533       39566393     NM_033655    CNTNAP3
19   chr9   39103533       39566393     NR_003528    ZNF658B
20   chr9   39103533       39566393     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244971998      245124515  NM_001312871         COX20
2    chr1  244971998      245124515     NM_004501        HNRNPU
4    chr1  244971998      245124515     NR_132782      SNORA100
5   chr21   17816255       18178408     NR_027790      MIR99AHG
7   chr21   17816255       18178408     NR_029480      MIRLET7C
8   chr21   17816255       18178408     NR_029514        MIR99A
9   chr21   17816255       18178408     NR_029694      MIR125B2
18   chr5   99699474       99885593     NM_198507       FAM174A
19   chr5   99699474       99885593     NR_027503  LOC100133050
20   chr6  162309411      162843972     NM_013988         PARK2
21   chr7   82894927       82999242  NM_001178129        SEMA3E,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1  112411204      112631761  NM_001270945  LOC643355
1  chr1  112411204      112631761     NM_172198      KCND3
2  chr1  112411204      112631761     NR_046619  KCND3-AS1
3  chr7   83077484       83869126  NM_001178129     SEMA3E
4  chr7   83077484       83869126     NM_006080     SEMA3A,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   67905059       68233866  NM_001127384      CTNNA3
2   chr10   81444472       81682576  NM_001278495      NUTM2B
3   chr10   81444472       81682576     NR_002724       MBL1P
4   chr10   81444472       81682576     NR_027512     BEND3P3
5   chr10   81444472       81682576     NR_029407   LOC642361
6   chr10   81444472       81682576     NR_033857     BMS1P21
7   chr10   81444472       81682576     NR_120611  NUTM2B-AS1
10   chr4   69263717       69889844     NM_001075     UGT2B10
12   chr4   69263717       69889844     NM_001076     UGT2B15
13   chr4   69263717       69889844     NM_001077     UGT2B17
14   chr4   69263717       69889844     NM_014058   TMPRSS11E
15   chr4   69263717       69889844     NM_024743      UGT2A3
16   chr7   75870247       76063912  NM_001110199       SRRM3
17   chr7   75870247       76063912  NM_001110354         ZP3
18   chr7   75870247       76063912     NM_001540       HSPB1
20   chr7   75870247       76063912     NM_012479       YWHAG
21   chr7   75870247       76063912     NM_080744       SSC4D,      chrom  cnv_start  cnv_terminate       tx_name        gene_name
0    chr10   67957213       68407483  NM_001127384           CTNNA3
2    chr16   15445611       15558494  NM_001128423           MPV17L
3    chr16   15445611       15558494  NM_001277325           NPIPA5
4    chr16   15445611       15558494     NM_033201         C16orf45
5    chr17    5571296        8233501     NM_000180           GUCY2D
6    chr17    5571296        8233501     NM_000546             TP53
7    chr17    5571296        8233501     NM_000697           ALOX12
8    chr17    5571296        8233501     NM_000747           CHRNB1
9    chr17    5571296        8233501     NM_000937           POLR2A
10   chr17    5571296        8233501  NM_001002914           KCTD11
11   chr17    5571296        8233501  NM_001005271             CHD3
12   chr17    5571296        8233501  NM_001037144           CNTROB
13   chr17    5571296        8233501  NM_001039130          ALOX15B
14   chr17    5571296        8233501     NM_001040             SHBG
15   chr17    5571296        8233501  NM_001040059             CD68
16   chr17    5571296        8233501     NM_001042           SLC2A4
17   chr17    5571296        8233501  NM_001080424            KDM6B
18   chr17    5571296        8233501  NM_001102614          SLC35G6
19   chr17    5571296        8233501  NM_001105520        C17orf100
21   chr17    5571296        8233501  NM_001128827             DLG4
22   chr17    5571296        8233501  NM_001128833            ZBTB4
23   chr17    5571296        8233501     NM_001139          ALOX12B
24   chr17    5571296        8233501  NM_001143760            EIF5A
27   chr17    5571296        8233501  NM_001143775          CTDNEP1
28   chr17    5571296        8233501  NM_001143838          SLC13A5
29   chr17    5571296        8233501  NM_001143990           WRAP53
31   chr17    5571296        8233501  NM_001165960           ALOXE3
32   chr17    5571296        8233501  NM_001177801           RANGRF
33   chr17    5571296        8233501     NM_001181            ASGR2
34   chr17    5571296        8233501  NM_001185022            CLDN7
..     ...        ...            ...           ...              ...
121  chr17    5571296        8233501     NR_002710         ALOX12P2
122  chr17    5571296        8233501     NR_002778          RPL29P2
123  chr17    5571296        8233501     NR_002912          SNORA67
124  chr17    5571296        8233501     NR_002918          SNORA48
125  chr17    5571296        8233501     NR_003000         SCARNA21
126  chr17    5571296        8233501     NR_024349        LOC284023
127  chr17    5571296        8233501     NR_026951        LINC00324
128  chr17    5571296        8233501     NR_029712           MIR195
129  chr17    5571296        8233501     NR_029896           MIR324
130  chr17    5571296        8233501     NR_030178           MIR497
131  chr17    5571296        8233501     NR_030684          TRAPPC1
133  chr17    5571296        8233501     NR_036201          MIR4314
134  chr17    5571296        8233501     NR_037146          TNFSF12
135  chr17    5571296        8233501     NR_037716           RNASEK
136  chr17    5571296        8233501     NR_037717  RNASEK-C17orf49
137  chr17    5571296        8233501     NR_037719   TMEM256-PLSCR3
138  chr17    5571296        8233501     NR_037926     SENP3-EIF4A1
139  chr17    5571296        8233501     NR_038310         MIR497HG
140  chr17    5571296        8233501     NR_039745        MIR4520-1
141  chr17    5571296        8233501     NR_039746          MIR4521
142  chr17    5571296        8233501     NR_039874        MIR4520-2
143  chr17    5571296        8233501     NR_040000        LOC339166
144  chr17    5571296        8233501     NR_040089       ALOX12-AS1
145  chr17    5571296        8233501     NR_045985         ALOX15P1
146  chr17    5571296        8233501     NR_046398             XAF1
147  chr17    5571296        8233501     NR_046431             CTC1
148  chr17    5571296        8233501     NR_106943          MIR6883
156   chr4  169236793      169349077  NM_001012967           DDX60L
158   chr4  169236793      169349077     NM_017631            DDX60
159   chr7  110601267      110717974  NM_001244606           IMMP2L

[119 rows x 5 columns],   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr4  169253624      169408668  NM_001012967    DDX60L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    7609621        7716417  NM_001256568       PPFIBP2
2   chr11    7609621        7716417  NM_001302826        CYB5R2
6   chr11    7609621        7716417     NM_198185         OVCH2
7    chr3   50276325       50586514  NM_001166425         GNAI2
8    chr3   50276325       50586514  NM_001200016          NAT6
10   chr3   50276325       50586514  NM_001200029         HYAL3
11   chr3   50276325       50586514  NM_001206957        RASSF1
15   chr3   50276325       50586514  NM_001290060        SEMA3B
18   chr3   50276325       50586514  NM_001291101      CACNA2D2
19   chr3   50276325       50586514  NM_001291284      CYB561D2
20   chr3   50276325       50586514  NM_001308379       ZMYND10
22   chr3   50276325       50586514     NM_003773         HYAL2
25   chr3   50276325       50586514     NM_006545         NPRL2
26   chr3   50276325       50586514     NM_006764         IFRD2
27   chr3   50276325       50586514     NM_007024       TMEM115
28   chr3   50276325       50586514     NM_007275         TUSC2
29   chr3   50276325       50586514     NM_153215        LSMEM2
30   chr3   50276325       50586514     NM_153281         HYAL1
34   chr3   50276325       50586514     NR_106932       MIR6872
35   chr3   50276325       50586514     NR_109831    RASSF1-AS1
36   chr3   50276325       50586514     NR_110702    SEMA3B-AS1
39   chr3  118748454      118890458  NM_001015887        IGSF11
41   chr3  118748454      118890458     NM_152539       C3orf30
42   chr5   96578051       97326951     NR_105028     LINC01340
43   chr7  143006090      143163361     NM_000083         CLCN1
44   chr7  143006090      143163361  NM_001278297       FAM131B
45   chr7  143006090      143163361  NM_001322263  LOC100507507
46   chr7  143006090      143163361     NM_003461           ZYX
47   chr7  143006090      143163361     NM_005232         EPHA1
49   chr7  143006090      143163361     NM_177437       TAS2R60
50   chr7  143006090      143163361     NR_033897     EPHA1-AS1
51   chr7  143006090      143163361     NR_106952       MIR6892
52   chr9   88403938       88569806  NM_001321881         NAA35
55   chr9   88403938       88569806     NR_029410     LOC389765,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr2   51217491       51484153  NM_001330079      NRXN1
3  chr2   51217491       51484153     NR_135237  LOC730100
4  chr4   93297197       93420048     NM_001510      GRID2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  165189084      165332603  NM_001174069     LMX1A
2  chr14   78332282       78443219  NM_001142545     ADCK1,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr9   88337754       88559332  NM_001286717    AGTPBP1
1  chr9   88337754       88559332  NM_001321881      NAA35
4  chr9   88337754       88559332     NR_029410  LOC389765,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   47785056       47910825  NM_001113498     MDGA2
3   chr5  119950299      120071541  NM_001300783     PRR16
6   chr7  108483144      109024189  NM_001024607   C7orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12770736       13003106  NM_001009611       PRAMEF4
1    chr1   12770736       13003106  NM_001010889       PRAMEF6
2    chr1   12770736       13003106  NM_001010890       PRAMEF9
3    chr1   12770736       13003106  NM_001012276       PRAMEF8
4    chr1   12770736       13003106  NM_001013631      HNRNPCL1
5    chr1   12770736       13003106  NM_001080830      PRAMEF12
6    chr1   12770736       13003106  NM_001103170       AADACL3
7    chr1   12770736       13003106  NM_001146181      HNRNPCL3
8    chr1   12770736       13003106  NM_001146344      PRAMEF11
9    chr1   12770736       13003106  NM_001294139       PRAMEF1
10   chr1   12770736       13003106  NM_001302551      HNRNPCL4
12   chr1   12770736       13003106     NM_023014       PRAMEF2
13   chr1   12770736       13003106     NM_152290      C1orf158
14   chr1  244971330      245172600  NM_001143943        EFCAB2
16   chr1  244971330      245172600  NM_001312871         COX20
18   chr1  244971330      245172600     NM_004501        HNRNPU
21   chr1  244971330      245172600     NR_111907  LOC101928068
22   chr1  244971330      245172600     NR_132782      SNORA100
23  chr14   19894971       20024154  NM_001145442         POTEM
24  chr14   19894971       20024154     NR_073459       BMS1P18
25  chr14   19894971       20024154     NR_110505  LOC100508046
26  chr14   19894971       20024154     NR_110526       DUXAP10
27  chr14   19894971       20024154     NR_122111     LINC01296
29  chr14   19894971       20024154     NR_133911       BMS1P22
30  chr14   47733085       47919204  NM_001113498         MDGA2
33   chr4  118827450      118972745     NM_004784         NDST3
34   chr9   39009750       39123330     NM_033655       CNTNAP3
35   chr9   43085488       43265511  NM_001012419     ANKRD20A3
36   chr9   43085488       43265511  NM_001012421     ANKRD20A2
37   chr9   43085488       43265511     NR_027472     LOC642929,     chrom  cnv_start  cnv_terminate    tx_name     gene_name
0   chr11    4189416        4318985  NR_047550  LOC100506082
1   chr15   28563298       28891240  NM_004667         HERC2
2   chr15   28563298       28891240  NR_033351       GOLGA8F
4   chr15   28563298       28891240  NR_033353       GOLGA8G
6   chr15   28563298       28891240  NR_039734     MIR4509-3
8    chr2  133524332      133729407  NM_207363        NCKAP5
9    chr2  133524332      133729407  NR_135572  LOC101928185
10   chr4   75419375       75563949  NM_001657          AREG,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr1  143566156      143730743  NR_104014     LINC01138
1  chr1  143566156      143730743  NR_106967       MIR6077
2  chr1  143566156      143730743  NR_111930  LOC100132057,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr9  132363790      132646009     NM_000113      TOR1A
1   chr9  132363790      132646009  NM_001286796      NTMT1
5   chr9  132363790      132646009     NM_004878      PTGES
6   chr9  132363790      132646009     NM_006676      USP20
7   chr9  132363790      132646009     NM_014506      TOR1B
8   chr9  132363790      132646009     NM_016307      PRRX2
9   chr9  132363790      132646009     NM_016520    C9orf78
10  chr9  132363790      132646009     NM_177999       ASB6
11  chr9  132363790      132646009     NM_199350    C9orf50
12  chr9  132363790      132646009     NR_106914    MIR6855
13  chr9  132363790      132646009     NR_132102  PRRX2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143563769      143680462     NR_106967       MIR6077
1   chr15   77842931       77994520  NM_001301186        LINGO1
11  chr15   77842931       77994520     NR_045123    LINGO1-AS1
12  chr15   77842931       77994520     NR_120361    LINGO1-AS2
13   chr4  190329818      190614361     NR_121679     LINC01262
14   chr4  190329818      190614361     NR_135513  LOC105379514,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3     341584         464435  NM_001253387      CHL1
2  chr3     341584         464435     NR_110739  CHL1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21931419       22566141  NM_001001912         OR4E2
1   chr14   21931419       22566141  NM_001005465        OR10G3
2   chr14   21931419       22566141  NM_001005466        OR10G2
3   chr14   21931419       22566141  NM_001163380         RAB2B
4   chr14   21931419       22566141  NM_001303523          TOX4
5   chr14   21931419       22566141  NM_001317107         OR4E1
6   chr14   21931419       22566141     NM_019852        METTL3
8   chr14   21931419       22566141     NR_111966         SALL2
10   chr4  145137879      145646541     NM_022475          HHIP
11   chr4  145137879      145646541     NR_037595      HHIP-AS1
12   chr9   67198965       67349320     NR_002817        AQP7P1
13   chr9   67198965       67349320     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   19651096       19758008     NM_006001        TUBA3C
1   chr13   19651096       19758008     NR_126054  LOC101928697
2   chr16   16404401       16537003  NM_001282511        NPIPA8
3   chr16   16404401       16537003     NR_036447        PKD1P1
4   chr16   16404401       16537003     NR_103772  LOC100288162
5   chr16   16404401       16537003     NR_106766     MIR6511A1
6   chr16   16404401       16537003     NR_106971     MIR6511A4
7   chr16   16404401       16537003     NR_107060     MIR6770-2
8    chr3   41316093       41432786  NM_001322500          ULK4
10   chr4   71416831       71533833     NM_016519          AMBN
11   chr4   71416831       71533833     NM_031889          ENAM
12   chr4   71416831       71533833     NM_144646        JCHAIN,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12   85463663       85572319  NM_001079910        LRRIQ1
1  chr14   19931378       20062009  NM_001145442         POTEM
2  chr14   19931378       20062009     NR_110505  LOC100508046
3  chr15   54508409       54743376  NM_001080534        UNC13C
5   chr4   94054992       94205297     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   82790596       82949074  NM_001164465     GOLGA6L10
1   chr15   82790596       82949074  NM_001291420      GOLGA6L9
3   chr15   82790596       82949074     NR_026811     GOLGA2P10
5   chr15   82790596       82949074     NR_045529     ADAMTS7P1
6   chr15   82790596       82949074     NR_102747     LOC727751
7   chr15   82790596       82949074     NR_111943         RPS17
9   chr15   82790596       82949074     NR_111962    GOLGA6L17P
10   chr2   31364442       31553573  NM_001145122        CAPN14
12   chr2   31364442       31553573     NM_014600          EHD3
13  chr21   44826320       44930635  NM_001320643  LOC102724428
14  chr21   44826320       44930635     NM_173354          SIK1
15  chr21   44826320       44930635     NR_026863     LINC00313
16  chr21   44826320       44930635     NR_026960     LINC00319
17  chr21   44826320       44930635     NR_136540  LOC102724354,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11     704114         860503     NM_001004         RPLP2
1   chr11     704114         860503  NM_001025234        TSPAN4
4   chr11     704114         860503  NM_001039490         CD151
5   chr11     704114         860503  NM_001042463        TMEM80
6   chr11     704114         860503  NM_001191060      SLC25A22
9   chr11     704114         860503  NM_001286606       CRACR2B
10  chr11     704114         860503  NM_001293167         PANO1
11  chr11     704114         860503  NM_001318824         PDDC1
13  chr11     704114         860503     NM_006755        TALDO1
14  chr11     704114         860503     NM_016564         CEND1
15  chr11     704114         860503     NM_020376        PNPLA2
16  chr11     704114         860503     NM_021128        POLR2L
17  chr11     704114         860503     NM_022772        EPS8L2
19  chr11     704114         860503     NM_145886         PIDD1
20  chr11     704114         860503     NR_002585       SNORA52
21  chr11     704114         860503     NR_126342     LOC171391
22  chr20    5175045        5290640     NM_003818          CDS2
23  chr20    5175045        5290640     NM_144773        PROKR2
24   chr7   64029887       64214201  NM_001282360        ZNF107
25   chr7   64029887       64214201     NR_033245     LOC641746
26   chr7   64029887       64214201     NR_077227  LOC100128885
28   chr7   64029887       64214201     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48311114       48593333  NM_001004702         OR4C3
1   chr11   48311114       48593333  NM_001004725         OR4S1
2   chr11   48311114       48593333  NM_001005512        OR4A47
3   chr11   48311114       48593333  NM_001005513        OR4C45
4   chr12   27124571       27267959  NM_001080406      C12orf71
5   chr12   27124571       27267959  NM_001271811         MED21
6   chr12   27124571       27267959     NM_016551        TM7SF3
7   chr20    5221021        5668992     NM_019593        GPCPD1
8   chr20    5221021        5668992     NM_144773        PROKR2
9   chr20    5221021        5668992     NR_015406     LINC00654
10  chr20    5221021        5668992     NR_029405     LOC643406
11  chr20    5221021        5668992     NR_038240     LINC00658
12  chr20    5221021        5668992     NR_109860  LOC101929207
13   chr5   83782662       85661578     NR_003719       NBPF22P
14   chr7   10955158       11068428     NM_002489        NDUFA4
15   chr7   10955158       11068428     NM_014660         PHF14
17   chr8  100541364      100899627     NM_004374         COX6C
18   chr8  100541364      100899627     NM_017890        VPS13B
19   chr8  100541364      100899627     NR_030329        MIR599
20   chr8  100541364      100899627     NR_030596        MIR875,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr3     719952        1311181  NM_001289081      CNTN6
1  chr3     719952        1311181     NR_110118  LINC01266,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48269213       48604189  NM_001004702      OR4C3
1   chr11   48269213       48604189  NM_001004725      OR4S1
2   chr11   48269213       48604189  NM_001004726      OR4X1
3   chr11   48269213       48604189  NM_001005512     OR4A47
4   chr11   48269213       48604189  NM_001005513     OR4C45
5   chr17   47827650       48196909  NM_001077503       TAC4
6   chr17   47827650       48196909  NM_001199158       KAT7
7   chr17   47827650       48196909  NM_001199898       PDK2
10  chr17   47827650       48196909  NM_001242791   FLJ45513
11  chr17   47827650       48196909  NM_001257359     SAMD14
12  chr17   47827650       48196909     NM_001934       DLX4
13  chr17   47827650       48196909     NM_002204      ITGA3
15  chr17   47827650       48196909     NM_005220       DLX3
16  chr17   47827650       48196909     NM_030802    FAM117A
18  chr17   47827650       48196909     NR_038230  LOC284080,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3   76787439       78023496  NM_001128929     ROBO2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr13   25234836       25533446  NM_001184993     RNF17
1  chr13   25234836       25533446  NM_001185085    ATP12A
2  chr13   25234836       25533446     NR_026730   TPTE2P1
3  chr13   25234836       25533446     NR_047594     CENPJ
4   chr7  110714055      110899995  NM_001099658     LRRN3
5   chr7  110714055      110899995  NM_001244606    IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr4   91147643       91299170  NM_001145065        CCSER1
2  chr4  121649410      121871550     NM_018699         PRDM5
3  chr7   64060285       64162995  NM_001282360        ZNF107
4  chr7   64060285       64162995     NR_077227  LOC100128885
6  chr7   64060285       64162995     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   67695816       68189024  NM_001127384    CTNNA3
2  chr11   83717321       84097258  NM_001142699      DLG2
6   chr9   39009562       39156480     NM_033655   CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  186197314      186300788  NM_001303232      PRG4
1   chr1  186197314      186300788     NM_003292       TPR
2  chr13   25253439       25397056  NM_001184993     RNF17
3  chr13   25253439       25397056  NM_001185085    ATP12A,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   30266480       30426850  NM_001282472   GOLGA8J
1  chr15   30266480       30426850     NR_026859    ULK4P3,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr3  118747520      118884605  NM_001015887        IGSF11
2  chr3  118747520      118884605     NM_152539       C3orf30
3  chr4   93277561       93395577     NM_001510         GRID2
4  chr7  124976788      125504811     NR_110188  LOC101928283
5  chr9   39093782       39759982  NM_001085452     SPATA31A1
6  chr9   39093782       39759982     NM_033655       CNTNAP3
7  chr9   39093782       39759982     NR_003528       ZNF658B
8  chr9   39093782       39759982     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89135695       90454207  NM_001105522      TRIM49D2
2   chr11   89135695       90454207  NM_001136486        TRIM64
3   chr11   89135695       90454207  NM_001143837          NOX4
4   chr11   89135695       90454207  NM_001143975        UBTFL1
5   chr11   89135695       90454207  NM_001144073       CHORDC1
6   chr11   89135695       90454207  NM_001164397       TRIM64B
7   chr11   89135695       90454207  NM_001195234       TRIM49C
8   chr11   89135695       90454207  NM_001206627      TRIM49D1
10  chr11   89135695       90454207  NM_001271942        TRIM77
15  chr11   89135695       90454207     NM_005467       NAALAD2
16  chr11   89135695       90454207     NM_020358        TRIM49
17  chr11   89135695       90454207     NM_153696        FOLH1B
18  chr11   89135695       90454207     NR_028346      TRIM53AP
20  chr11   89135695       90454207     NR_039711       MIR4490
21  chr11   89135695       90454207     NR_104190      DISC1FP1
23   chr2  242455963      244079919  NM_001164356         THAP4
24   chr2  242455963      244079919  NM_001165031         DTYMK
25   chr2  242455963      244079919  NM_001167601          NEU4
27   chr2  242455963      244079919  NM_001287249        D2HGDH
28   chr2  242455963      244079919  NM_001330161          ING5
30   chr2  242455963      244079919     NM_005018         PDCD1
32   chr2  242455963      244079919     NM_022134       GAL3ST2
34   chr2  242455963      244079919     NM_032515           BOK
35   chr2  242455963      244079919     NM_173821          RTP5
36   chr2  242455963      244079919     NM_178326         ATG4B
37   chr2  242455963      244079919     NR_033346       BOK-AS1
38   chr2  242455963      244079919     NR_110220     LINC01237
39   chr2  242455963      244079919     NR_110592  LOC102723927
40   chr2  242455963      244079919     NR_130699     LOC728323
41   chr2  242455963      244079919     NR_135766     LOC285095,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  134216492      135774178     NM_054025        B3GAT1
1   chr11  134216492      135774178     NM_138342        GLB1L2
2   chr11  134216492      135774178     NR_033852     LOC283177
3   chr11  134216492      135774178     NR_135050  LOC100507548
4   chr20   14816902       15547098  NM_001033087       MACROD2
6   chr20   14816902       15547098     NR_037841   MACROD2-AS1
8    chr7  110543022      110646458  NM_001244606        IMMP2L
10   chr9     307035         429242  NM_001190458         DOCK8,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr2   97215612       97506592  NM_001115016    KANSL3
1   chr2   97215612       97506592  NM_001293083    FER1L5
2   chr2   97215612       97506592  NM_001319085    ARID5A
4   chr2   97215612       97506592  NM_001322354    LMAN2L
5   chr2   97215612       97506592     NM_017623     CNNM3
6   chr2   97215612       97506592     NM_020184     CNNM4
8   chr2   97215612       97506592     NM_144994   ANKRD23
9   chr2   97215612       97506592     NR_036074   MIR3127
11  chr5  142380152      142486905  NM_001135608  ARHGAP26
12  chr9   39008913       39124510     NM_033655   CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr19   33183982       33332229  NM_001105570    NUDT19
1  chr19   33183982       33332229  NM_001110822    TDRD12
2  chr19   33183982       33332229     NM_014270    SLC7A9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12853423       13004797  NM_001009611       PRAMEF4
1    chr1   12853423       13004797  NM_001010889       PRAMEF6
2    chr1   12853423       13004797  NM_001010890       PRAMEF9
3    chr1   12853423       13004797  NM_001012276       PRAMEF8
4    chr1   12853423       13004797  NM_001013631      HNRNPCL1
5    chr1   12853423       13004797  NM_001146181      HNRNPCL3
6    chr1   12853423       13004797  NM_001146344      PRAMEF11
7    chr1   12853423       13004797  NM_001294139       PRAMEF1
8    chr1   12853423       13004797  NM_001302551      HNRNPCL4
10   chr1   12853423       13004797     NM_023014       PRAMEF2
11  chr10   26053269       26224788     NM_017433         MYO3A
12  chr10   26053269       26224788     NR_120650  LOC101929073
13   chr4   69000668       69183821  NM_001031732        YTHDC1
14   chr4   69000668       69183821     NM_182502     TMPRSS11B
15   chr4   69000668       69183821     NR_015446        FTLP10
16   chr4   69000668       69183821     NR_104048   TMPRSS11BNL
17   chr7   64063590       64432849  NM_001160183        ZNF138
18   chr7   64063590       64432849  NM_001282360        ZNF107
19   chr7   64063590       64432849     NM_021148        ZNF273
21   chr7   64063590       64432849     NR_077227  LOC100128885
23   chr7   64063590       64432849     NR_106898       MIR6839
24   chr9   74657568       74819138  NM_001128618       C9orf57
25   chr9   74657568       74819138  NM_001242505           GDA,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr3  197225087      197429035  NM_001145642      RUBCN
2  chr3  197225087      197429035     NM_203314       BDH1
4  chr3  197225087      197429035     NR_003266  LOC220729
5  chr3  197225087      197429035     NR_030627     MIR922,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   80778556       80964771  NM_001318536         SPRY2
3    chr4   69288939       69426174     NM_001077       UGT2B17
4    chr4   69288939       69426174     NM_014058     TMPRSS11E
5    chr4  136798312      137272318     NR_103762     LINC00613
7    chr7   29528737       29648739  NM_001293069          CHN2
11   chr7   29528737       29648739  NM_001329997         PRR15
14   chr7   64078785       64720827  NM_001007253        ERV3-1
15   chr7   64078785       64720827  NM_001160183        ZNF138
16   chr7   64078785       64720827  NM_001282360        ZNF107
17   chr7   64078785       64720827     NM_015852        ZNF117
18   chr7   64078785       64720827     NM_021148        ZNF273
19   chr7   64078785       64720827     NR_033416        CCT6P3
21   chr7   64078785       64720827     NR_077227  LOC100128885
23   chr7   64078785       64720827     NR_106898       MIR6839
24   chr7  145962545      146097072     NM_014141       CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   54197005       54322569     NR_120641     LINC01468
2   chr13   31475118       31578278     NM_032849         MEDAG
3   chr13   31475118       31578278     NM_152325         TEX26
4   chr13   31475118       31578278     NR_038287     TEX26-AS1
6    chr2   50793908       51305121  NM_001330079         NRXN1
9    chr2   50793908       51305121     NR_130470       MIR8485
10   chr2   50793908       51305121     NR_135237     LOC730100
11   chr7    6916631        7312079     NM_020156       C1GALT1
12   chr7    6916631        7312079     NR_034022  LOC100131257
13   chr7    6916631        7312079     NR_037454       MIR3683
14   chr7    6916631        7312079     NR_108073  LOC101927354,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   64935709       65456270  NM_001004326    SLC22A20
1   chr11   64935709       65456270  NM_001008778       SPDYC
2   chr11   64935709       65456270  NM_001099409     EHBP1L1
3   chr11   64935709       65456270  NM_001130144       LTBP3
4   chr11   64935709       65456270  NM_001198868       CAPN1
6   chr11   64935709       65456270  NM_001243984        RELA
7   chr11   64935709       65456270  NM_001278250    SLC25A45
9   chr11   64935709       65456270  NM_001303024      SSSCA1
10  chr11   64935709       65456270  NM_001330308        DPF2
11  chr11   64935709       65456270     NM_002419     MAP3K11
12  chr11   64935709       65456270     NM_002689       POLA2
14  chr11   64935709       65456270     NM_006747       SIPA1
15  chr11   64935709       65456270     NM_006779    CDC42EP2
16  chr11   64935709       65456270     NM_020680       SCYL1
17  chr11   64935709       65456270     NM_031904       FRMD8
18  chr11   64935709       65456270     NM_032223       PCNX3
19  chr11   64935709       65456270     NM_033348       KCNK7
20  chr11   64935709       65456270     NM_145719       TIGD3
21  chr11   64935709       65456270     NM_152832      FAM89B
24  chr11   64935709       65456270     NR_002819      MALAT1
25  chr11   64935709       65456270     NR_028272       NEAT1
26  chr11   64935709       65456270     NR_030343      MIR612
28  chr11   64935709       65456270     NR_038923  SSSCA1-AS1
29  chr11   64935709       65456270     NR_039709     MIR4489
30  chr11   64935709       65456270     NR_039839     MIR4690
33   chr2   75862291       75971526  NM_001201334       GCFC2
36   chr2   75862291       75971526     NM_014763      MRPL19,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21560418       21752796  NM_001077180        METTL9
1   chr16   21560418       21752796  NM_001161683          OTOA
3   chr16   21560418       21752796     NM_005849         IGSF6
6   chr16   21560418       21752796     NR_110930  LOC101927814
7   chr16   84001211       84222926  NM_001080442       SLC38A8
8   chr16   84001211       84222926  NM_001146051         HSDL1
9   chr16   84001211       84222926  NM_001243156         TAF1C
10  chr16   84001211       84222926  NM_001318756        DNAAF1
11  chr16   84001211       84222926     NM_003791        MBTPS1
12  chr16   84001211       84222926     NM_019065        NECAB2
14  chr22   17232996       17427673     NM_175878          XKR3
15  chr22   17232996       17427673     NR_003607       HSFY1P1,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr3   59985942       60137531  NM_001320899       FHIT
2  chr4   69278957       69389704     NM_014058  TMPRSS11E
3  chr7  157328019      157638540  NM_001308267     PTPRN2
5  chr7  157328019      157638540     NR_029689   MIR153-2
6  chr9   28193678       28353087  NM_001258282     LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   25376266       25758934  NM_001290261        ZNF337
1   chr20   25376266       25758934  NM_001318226          NINL
3   chr20   25376266       25758934     NM_021067         GINS1
4   chr20   25376266       25758934     NM_152667          NANP
5   chr20   25376266       25758934     NR_026714       FAM182B
7   chr20   25376266       25758934     NR_126465    ZNF337-AS1
10  chr20   25376266       25758934     NR_135006  LOC105372582
11  chr20   25376266       25758934     NR_135512  LOC105379511
12  chr22   17222564       17402292     NM_175878          XKR3
13  chr22   17222564       17402292     NR_003607       HSFY1P1
14  chr22   17222564       17402292     NR_134584  LOC101929350
15   chr4  169212704      169351632  NM_001012967        DDX60L
17   chr4  169212704      169351632     NM_017631         DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187191912      187318854     NR_126347     LINC01036
1   chr22   20118514       20730587  NM_001242313      TMEM191B
2   chr22   20118514       20730587  NM_001243537       CCDC188
3   chr22   20118514       20730587     NM_013373        ZDHHC8
4   chr22   20118514       20730587     NM_015672        RIMBP3
5   chr22   20118514       20730587     NM_023004         RTN4R
6   chr22   20118514       20730587     NM_033257        DGCR6L
7   chr22   20118514       20730587     NR_003563       PI4KAP1
8   chr22   20118514       20730587     NR_026919     LINC00896
9   chr22   20118514       20730587     NR_031618       MIR1286
10  chr22   20118514       20730587     NR_038460     LOC284865
11  chr22   20118514       20730587     NR_136560       FAM230A
12  chr22   20118514       20730587     NR_136569     LOC729461
13  chr22   20118514       20730587     NR_136572  LOC101927859
14   chr5   24061994       24240300     NR_131245       C5orf17
15   chr7   64118206       64230223  NM_001282360        ZNF107
17   chr7   64118206       64230223     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245028521      245144198  NM_001143943        EFCAB2
3    chr1  245028521      245144198     NR_111907  LOC101928068
4   chr13  102866765      102994355  NM_001321932         FGF14
11  chr13  102866765      102994355     NR_036486     FGF14-IT1
12  chr14   47751173       47870259  NM_001113498         MDGA2
15  chr16   68617520       68720706  NM_001317195          CDH3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   20828159       20954396  NM_001288713         NELL1
1   chr11   67179063       67332374  NM_001018070        CORO1B
2   chr11   67179063       67332374  NM_001078650       TMEM134
3   chr11   67179063       67332374  NM_001166222        CARNS1
4   chr11   67179063       67332374  NM_001300895         CABP4
6   chr11   67179063       67332374  NM_001302959           AIP
7   chr11   67179063       67332374  NM_001318496         CABP2
8   chr11   67179063       67332374     NM_003952       RPS6KB2
10  chr11   67179063       67332374     NM_004910       PITPNM1
11  chr11   67179063       67332374     NM_005608       PTPRCAP
12  chr11   67179063       67332374     NM_005851       CDK2AP2
15  chr11   67179063       67332374     NM_206997        GPR152
17  chr11   67179063       67332374     NR_106810       MIR6752
18  chr21   29423489       29533213     NR_126010     LOC284825
20  chr21   29423489       29533213     NR_126012  LOC101927973
21   chr9   30347736       30466822     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   65442944       65732279     NM_003613      CILP
1   chr15   65442944       65732279     NM_004884    IGDCC3
2   chr15   65442944       65732279     NM_006660      CLPX
3   chr15   65442944       65732279     NM_017851    PARP16
4   chr15   65442944       65732279     NM_020962    IGDCC4
5   chr17    3320281        3421357     NM_000049      ASPA
7   chr17    3320281        3421357  NM_001170696   SPATA22
12  chr17    3320281        3421357     NM_003554     OR1E2
13  chr17    3320281        3421357     NM_012373     OR3A3
15  chr17    3320281        3421357     NM_145068     TRPV3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63315400       63465438     NR_047029     LINC00448
3    chr2   51143568       51375963  NM_001330079         NRXN1
6    chr2   51143568       51375963     NR_135237     LOC730100
7    chr3  156001669      156119685  NM_001308217        KCNAB1
12   chr7  110615394      113165314  NM_001099658         LRRN3
13   chr7  110615394      113165314  NM_001134468        LSMEM1
14   chr7  110615394      113165314  NM_001146266         GPR85
16   chr7  110615394      113165314  NM_001197079         IFRD1
18   chr7  110615394      113165314  NM_001244606        IMMP2L
19   chr7  110615394      113165314  NM_001287497       TMEM168
21   chr7  110615394      113165314     NM_014705         DOCK4
23   chr7  110615394      113165314     NM_021994        ZNF277
25   chr7  110615394      113165314     NM_152556          BMT2
27   chr7  110615394      113165314     NR_024412     LINC00998
28   chr7  110615394      113165314     NR_103806     DOCK4-AS1
29   chr7  110615394      113165314     NR_110158  LOC101928012
30   chr7  110615394      113165314     NR_110160  LOC100996249
31   chr7  110615394      113165314     NR_110162        HRAT17
33   chr9   26551530       26899841  NM_001167575         CAAP1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr15   28141916       28352329     NM_000275         OCA2
2    chr2   95479467       95723108     NM_022439          MAL
3    chr2   95479467       95723108     NM_144705        TEKT4
4    chr2   95479467       95723108     NR_003366   ANKRD20A8P
5    chr2   95479467       95723108     NR_037597    LOC442028
6   chr20   14622050       14890562     NM_080676      MACROD2
7   chr20   14622050       14890562     NR_037841  MACROD2-AS1
9    chr3  156014199      156146280  NM_001308217       KCNAB1
14   chr4   98387286       98490722     NM_174952        STPG2
15   chr4   98387286       98490722     NR_102713    STPG2-AS1,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1  224720783      224915022  NM_001322302      CNIH3
4  chr2   39727439       39938049  NM_001167959   TMEM178A
6  chr2   39727439       39938049     NR_037875  LOC728730,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143105297      143223856     NR_110761  LOC102723769
1   chr11   67275549       67381253     NM_000852         GSTP1
2   chr11   67275549       67381253  NM_001166102        NDUFV1
3   chr11   67275549       67381253  NM_001318496         CABP2
4   chr11   67275549       67381253     NM_005851       CDK2AP2
5   chr11   67275549       67381253     NR_033791        DOC2GP
7   chr11   67275549       67381253     NR_130935      C11orf72
8   chr15   28762836       28916952     NR_033351       GOLGA8F
9   chr15   28762836       28916952     NR_033353       GOLGA8G
10  chr15   28762836       28916952     NR_036443       HERC2P9
11   chr4    8996392        9695102  NM_001040448       DEFB131
12   chr4    8996392        9695102  NM_001242326      USP17L25
20   chr4    8996392        9695102  NM_001256852      USP17L10
21   chr4    8996392        9695102  NM_001256853      USP17L12
23   chr4    8996392        9695102  NM_001256854      USP17L11
26   chr4    8996392        9695102  NM_001256855      USP17L13
27   chr4    8996392        9695102  NM_001256857      USP17L17
28   chr4    8996392        9695102  NM_001256860      USP17L19
29   chr4    8996392        9695102  NM_001256861      USP17L20
30   chr4    8996392        9695102  NM_001256894      USP17L15
31   chr4    8996392        9695102     NR_027279      USP17L6P
32   chr4    8996392        9695102     NR_031688      MIR548I2
33   chr4    8996392        9695102     NR_046416      USP17L9P
34   chr7   69236228       69557242  NM_001127231         AUTS2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   82218478       82371789  NM_001297704        ADGRL2
2  chr18   24716352       25160646  NM_001256316         CHST9
3  chr18   24716352       25160646     NR_134589  LOC105372038,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11  131443185      131693921  NM_001048209       NTM
1  chr11  131443185      131693921     NR_126159   NTM-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145325271      145458287  NM_001277444         NBPF9
1    chr1  145325271      145458287  NM_001278267        NBPF20
2    chr1  145325271      145458287  NM_001302371        NBPF10
3    chr1  145325271      145458287  NM_001313972         TXNIP
5    chr1  145325271      145458287     NM_032305       POLR3GL
6    chr1  145325271      145458287     NM_145277          HFE2
7    chr1  145325271      145458287     NR_104217       NBPF25P
8    chr1  145325271      145458287     NR_125967  LOC101928979
9   chr16   21493900       21617404  NM_001077180        METTL9
11  chr16   21493900       21617404     NR_002594      SLC7A5P2
12  chr16   21493900       21617404     NR_027155        SMG1P3
13  chr16   21493900       21617404     NR_049833     MIR3680-2
14  chr16   21493900       21617404     NR_110930  LOC101927814
15   chr2     902189        1071646     NM_018968         SNTG2
16   chr2     902189        1071646     NR_136151  LOC101060391
17   chr7   64042358       64144367  NM_001282360        ZNF107
18   chr7   64042358       64144367     NR_033245     LOC641746
19   chr7   64042358       64144367     NR_077227  LOC100128885
21   chr7   64042358       64144367     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr18   19160286       19509128  NM_001291916        SNRPD1
1   chr18   19160286       19509128  NM_001308256         ABHD3
3   chr18   19160286       19509128     NM_020774          MIB1
4   chr18   19160286       19509128     NM_052911         ESCO1
5   chr18   19160286       19509128     NR_029662        MIR1-2
6   chr18   19160286       19509128     NR_029675      MIR133A1
7   chr18   19160286       19509128     NR_031565      MIR320C1
8   chr18   19160286       19509128     NR_110369    MIR133A1HG
9   chr21   44790865       44913062  NM_001320643  LOC102724428
10  chr21   44790865       44913062     NM_173354          SIK1
11  chr21   44790865       44913062     NR_026863     LINC00313
12  chr21   44790865       44913062     NR_026960     LINC00319
13  chr21   44790865       44913062     NR_136540  LOC102724354
14   chr3   60436483       60537752  NM_001320899          FHIT
15   chr6  120231385      120379102     NR_036098       MIR3144,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11    6694485        6868098  NM_001004489       OR2AG1
1   chr11    6694485        6868098  NM_001004490       OR2AG2
2   chr11    6694485        6868098     NM_003696        OR6A2
3   chr11    6694485        6868098     NM_022061       MRPL17
4   chr11    6694485        6868098     NM_178168       OR10A5
5   chr11    6694485        6868098     NR_003945       GVINP1
6   chr11   83672138       84170608  NM_001142699         DLG2
10   chr5  167299956      167441341  NM_001080428        TENM2
12   chr9   11723614       12795873     NM_000550        TYRP1
13   chr9   11723614       12795873     NM_203403      LURAP1L
14   chr9   11723614       12795873     NR_125775  LURAP1L-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  134040720      134226839  NM_001098637     PWWP2B
1   chr10  134040720      134226839  NM_001143757     LRRC27
4   chr10  134040720      134226839  NM_001318878     STK32C
12   chr3     808941        4231127  NM_001173482       CRBN
13   chr3     808941        4231127  NM_001206955      CNTN4
15   chr3     808941        4231127  NM_001289081      CNTN6
16   chr3     808941        4231127  NM_001302946      TRNT1
17   chr3     808941        4231127  NM_001324189      LRRN1
19   chr3     808941        4231127     NM_175726      IL5RA
22   chr3     808941        4231127     NR_046554  CNTN4-AS1
23   chr3     808941        4231127     NR_046555  CNTN4-AS2
24   chr3     808941        4231127     NR_110118  LINC01266
25   chr7  110758223      110962235  NM_001099658      LRRN3
26   chr7  110758223      110962235  NM_001244606     IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr5   20415059       20813278  NM_001291956         CDH18
1   chr6  162763330      163023550     NM_013988         PARK2
2   chr7   64028300       64179754  NM_001282360        ZNF107
3   chr7   64028300       64179754     NR_033245     LOC641746
4   chr7   64028300       64179754     NR_077227  LOC100128885
6   chr7   64028300       64179754     NR_106898       MIR6839
7   chr7  152341455      152470014     NM_005431         XRCC2
8   chr7  152341455      152470014     NM_020445        ACTR3B
9   chr9     318770         715990  NM_001190458         DOCK8
10  chr9     318770         715990  NM_001256876         KANK1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr18   19194892       19303975  NM_001291916     SNRPD1
1   chr18   19194892       19303975  NM_001308256      ABHD3
3   chr18   19194892       19303975     NR_031565   MIR320C1
4    chr9  132405149      133135345     NM_000113      TOR1A
5    chr9  132405149      133135345  NM_001128826       NCS1
6    chr9  132405149      133135345  NM_001136557     GPR107
8    chr9  132405149      133135345  NM_001291815      HMCN2
9    chr9  132405149      133135345     NM_004878      PTGES
10   chr9  132405149      133135345     NM_006676      USP20
12   chr9  132405149      133135345     NM_014506      TOR1B
13   chr9  132405149      133135345     NM_015033      FNBP1
14   chr9  132405149      133135345     NM_016307      PRRX2
15   chr9  132405149      133135345     NM_016520    C9orf78
16   chr9  132405149      133135345     NR_106914    MIR6855
17   chr9  132405149      133135345     NR_132102  PRRX2-AS1
18   chr9  132405149      133135345     NR_135124  LOC401554,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr15   41672125       41834423  NM_001243142         NUSAP1
1   chr15   41672125       41834423     NM_002220          ITPKA
2   chr15   41672125       41834423     NM_015138           RTF1
3   chr15   41672125       41834423     NM_015540          RPAP1
4   chr15   41672125       41834423     NM_206961            LTK
5   chr15   41672125       41834423     NR_045620        NDUFAF1
6   chr16   15045023       15397138  NM_001270767          NTAN1
7   chr16   15045023       15397138  NM_001285445         PDXDC1
12  chr16   15045023       15397138  NM_001301064           RRN3
14  chr16   15045023       15397138     NM_006985         NPIPA1
15  chr16   15045023       15397138     NR_037466      MIR3180-4
16  chr16   15045023       15397138     NR_106775      MIR6511B1
17  chr16   15045023       15397138     NR_106965      MIR6511B2
18  chr16   15045023       15397138     NR_123721  PKD1P6-NPIPP1
20  chr16   15045023       15397138     NR_125434   LOC100505915
21   chr8    3922085        4102643     NM_033225          CSMD1
22   chr9   39069551       39319162     NM_033655        CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   12836674       12964991  NM_001009611       PRAMEF4
1   chr1   12836674       12964991  NM_001013631      HNRNPCL1
2   chr1   12836674       12964991  NM_001080830      PRAMEF12
3   chr1   12836674       12964991  NM_001146181      HNRNPCL3
4   chr1   12836674       12964991  NM_001146344      PRAMEF11
5   chr1   12836674       12964991  NM_001294139       PRAMEF1
6   chr1   12836674       12964991  NM_001302551      HNRNPCL4
8   chr1   12836674       12964991     NM_023014       PRAMEF2
9   chr5   63831578       65291029  NM_001029875        RGS7BP
10  chr5   63831578       65291029  NM_001093755      TRAPPC13
11  chr5   63831578       65291029  NM_001164442       FAM159B
12  chr5   63831578       65291029  NM_001267038         CENPK
13  chr5   63831578       65291029  NM_001278926         PPWD1
14  chr5   63831578       65291029  NM_001297645         CWC27
18  chr5   63831578       65291029     NM_018695         ERBIN
19  chr5   63831578       65291029     NM_019072          SGTB
20  chr5   63831578       65291029     NM_020726           NLN
21  chr5   63831578       65291029     NM_033228        TRIM23
22  chr5   63831578       65291029     NM_173829      SREK1IP1
24  chr5   63831578       65291029     NR_028474  LOC100303749
26  chr5   63831578       65291029     NR_135689       ADAMTS6
27  chr6  162501833      162678806     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   42125702       42295215  NM_001346175     LRFN5
1   chr22   19879103       20054919     NM_000754      COMT
4   chr22   19879103       20054919  NM_001282512    TXNRD2
5   chr22   19879103       20054919  NM_001283116    TANGO2
8   chr22   19879103       20054919     NM_001670     ARVCF
11  chr22   19879103       20054919     NR_029706    MIR185
12  chr22   19879103       20054919     NR_039918   MIR4761,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   16248795       16453801  NM_001170798   SLC15A5
1  chr14   42037001       42700020  NM_001346175     LRFN5
2  chr18   35092395       35260299     NM_020180     CELF4
3  chr18   35092395       35260299     NR_036202   MIR4318
4   chr4  184430809      184532575  NM_001291959      ING2
6   chr7   64116720       64249548  NM_001282360    ZNF107
8   chr7   64116720       64249548     NR_106898   MIR6839
9   chr7   88221151       88394431     NM_181646   ZNF804B,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr18   61830998       62117975  NR_033881  LOC284294
1  chr18   61830998       62117975  NR_033983  LINC01538
2   chr4   94089764       94206455  NM_001510      GRID2
3   chr4  133393408      133640299  NR_126401  LINC01256
4   chr9    6565535        6707114  NM_000170       GLDC,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    7846353        8059816  NM_001003745     OR10A3
1   chr11    7846353        8059816  NM_001004461     OR10A6
2   chr11    7846353        8059816     NM_003754      EIF3F
3   chr11    7846353        8059816     NM_153445      OR5P3
4   chr11    7846353        8059816     NM_176821     NLRP10
5   chr11    7846353        8059816     NR_027711     OR5E1P
6   chr11    7846353        8059816     NR_036678  LOC283299
7   chr11    7846353        8059816     NR_125366     CASC23
8   chr15   20323004       21795682  NM_001145004   GOLGA6L6
9   chr15   20323004       21795682  NM_001277303     POTEB2
10  chr15   20323004       21795682     NM_207355     POTEB3
11  chr15   20323004       21795682     NR_027411   GOLGA8CP
12  chr15   20323004       21795682     NR_027992     NBEAP1
13  chr15   20323004       21795682     NR_028506      NF1P2
14  chr15   20323004       21795682     NR_036062  MIR3118-2
15  chr15   20323004       21795682     NR_036432    HERC2P3
16  chr15   20323004       21795682     NR_038836    CHEK2P2
17  chr15   20323004       21795682     NR_040094  LINC01193
18  chr15   20323004       21795682     NR_049895  MIR5701-2,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   67235627       67452081  NM_020403      PCDH9
1  chr13   67235627       67452081  NR_046527  PCDH9-AS2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  165183825      165369940  NM_001174069     LMX1A
2  chr22   32455947       32580962     NM_000343    SLC5A1
3  chr22   32455947       32580962  NM_001010859  C22orf42
5  chr22   32455947       32580962     NR_040114   AP1B1P1,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr15   43786259       44171732  NM_001018108           SERF2
1   chr15   43786259       44171732  NM_001167941           WDR76
2   chr15   43786259       44171732  NM_001190214         PPIP5K1
6   chr15   43786259       44171732  NM_001199885            HYPK
7   chr15   43786259       44171732  NM_001258031         SERINC4
8   chr15   43786259       44171732  NM_001282309        CATSPER2
9   chr15   43786259       44171732  NM_001286490           FRMD5
11  chr15   43786259       44171732  NM_001321927          CKMT1A
14  chr15   43786259       44171732     NM_002373           MAP1A
15  chr15   43786259       44171732     NM_005313           PDIA3
16  chr15   43786259       44171732     NM_005657         TP53BP1
17  chr15   43786259       44171732     NM_005926           MFAP1
19  chr15   43786259       44171732     NM_020990          CKMT1B
20  chr15   43786259       44171732     NM_025165            ELL3
21  chr15   43786259       44171732     NM_153700            STRC
23  chr15   43786259       44171732     NR_002318      CATSPER2P1
24  chr15   43786259       44171732     NR_003571          PIN4P1
25  chr15   43786259       44171732     NR_031695         MIR1282
26  chr15   43786259       44171732     NR_037673  SERF2-C15ORF63
30  chr22   19948066       20121750     NM_000754            COMT
33  chr22   19948066       20121750  NM_001190326           DGCR8
34  chr22   19948066       20121750  NM_001278639          RANBP1
37  chr22   19948066       20121750  NM_001283116          TANGO2
40  chr22   19948066       20121750     NM_001670           ARVCF
42  chr22   19948066       20121750     NM_013373          ZDHHC8
43  chr22   19948066       20121750     NM_022727          TRMT2A
44  chr22   19948066       20121750     NR_029706          MIR185
45  chr22   19948066       20121750     NR_031706         MIR1306
46  chr22   19948066       20121750     NR_037412         MIR3618
47  chr22   19948066       20121750     NR_039918         MIR4761
48  chr22   19948066       20121750     NR_106874         MIR6816
49   chr3   60302970       60428062  NM_001320899            FHIT
50   chr7  110515148      110776901  NM_001099658           LRRN3
51   chr7  110515148      110776901  NM_001244606          IMMP2L
53   chr9   30384103       30632281     NR_046204       LINC01242,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   45682154       45789569     NM_018353  MIS18BP1
1   chr2  242491397      242631437  NM_001164356     THAP4
2   chr2  242491397      242631437  NM_001165031     DTYMK
3   chr2  242491397      242631437  NM_001330161      ING5
5   chr2  242491397      242631437     NM_032515       BOK
6   chr2  242491397      242631437     NM_178326     ATG4B
7   chr2  242491397      242631437     NR_033346   BOK-AS1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3  145787979      146094127     NM_000935     PLOD2
1  chr3  145787979      146094127  NM_001128304    PLSCR4
3  chr6  162838246      163004346     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12803448       12935590  NM_001013631   HNRNPCL1
1    chr1   12803448       12935590  NM_001080830   PRAMEF12
2    chr1   12803448       12935590  NM_001146181   HNRNPCL3
3    chr1   12803448       12935590  NM_001146344   PRAMEF11
4    chr1   12803448       12935590  NM_001294139    PRAMEF1
5    chr1   12803448       12935590  NM_001302551   HNRNPCL4
7    chr1   12803448       12935590     NM_023014    PRAMEF2
8    chr1   12803448       12935590     NM_152290   C1orf158
9   chr13   89222403       89344198     NR_047490  LINC00560
10  chr16    6534376        6744986  NM_001308117     RBFOX1
12   chr2   75927904       76076639  NM_001201334      GCFC2, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   60325467       60439355     NR_026946     LINC00301
1   chr14   38174321       38308806  NM_001310135          TTC6
2   chr17    3864389        4009048     NM_015113         ZZEF1
3   chr17    3864389        4009048     NM_174955        ATP2A3
4   chr19    1820216        2059757  NM_001130111       ABHD17A
5   chr19    1820216        2059757     NM_001319       CSNK1G2
6   chr19    1820216        2059757  NM_001329539        SCAMP4
7   chr19    1820216        2059757     NM_017572         MKNK2
8   chr19    1820216        2059757     NM_017797         BTBD2
9   chr19    1820216        2059757     NM_020695         REXO1
10  chr19    1820216        2059757     NM_031918         KLF16
11  chr19    1820216        2059757     NM_138422         ADAT3
12  chr19    1820216        2059757     NR_033400   CSNK1G2-AS1
13  chr19    1820216        2059757     NR_034114  LOC100288123
14   chr2   50899211       51069249  NM_001330082         NRXN1
15   chr2   50899211       51069249     NR_130470       MIR8485
16   chr2   95939849       96270489  NM_001034914        KCNIP3
17   chr2   95939849       96270489  NM_001164464       TRIM43B
18   chr2   95939849       96270489  NM_001321070         PROM2
20   chr2   95939849       96270489     NM_016044        FAHD2A
21   chr2   95939849       96270489     NM_138800        TRIM43,   chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr7   53230056       54751485  NM_001301009      VSTM2A
2  chr7   53230056       54751485     NR_004422       HPVC1
3  chr7   53230056       54751485     NR_038371   LINC01446
4  chr7   53230056       54751485     NR_038994  VSTM2A-OT1
5  chr7   53230056       54751485     NR_120515   LINC01445,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr20   14751230       14921268     NM_080676      MACROD2
1   chr20   14751230       14921268     NR_037841  MACROD2-AS1
3    chr7   64149198       64369143  NM_001160183       ZNF138
4    chr7   64149198       64369143  NM_001282360       ZNF107
5    chr7   64149198       64369143     NM_021148       ZNF273
7    chr7  153800863      153967239  NM_001039350         DPP6
10   chr9   39086095       39265233     NM_033655      CNTNAP3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2  110177808      110305895  NM_001099289    SH3RF3
1  chr2  110177808      110305895  NM_001321504    SEPT10, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr22   19937425       20082862     NM_000754      COMT
3   chr22   19937425       20082862  NM_001190326     DGCR8
4   chr22   19937425       20082862  NM_001283116    TANGO2
7   chr22   19937425       20082862     NM_001670     ARVCF
9   chr22   19937425       20082862     NR_029706    MIR185
10  chr22   19937425       20082862     NR_031706   MIR1306
11  chr22   19937425       20082862     NR_037412   MIR3618
12  chr22   19937425       20082862     NR_039918   MIR4761
13   chr4   91150708       91481348  NM_001145065    CCSER1
15   chr7   75764314       76130338  NM_001102594      DTX2
17   chr7   75764314       76130338  NM_001110199     SRRM3
18   chr7   75764314       76130338  NM_001110354       ZP3
19   chr7   75764314       76130338     NM_001540     HSPB1
21   chr7   75764314       76130338     NM_012479     YWHAG
22   chr7   75764314       76130338     NM_080744     SSC4D
23   chr7   75764314       76130338     NR_003262    FDPSP2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1  224691688      225003495  NM_001322302        CNIH3
4  chr12    5103278        5247162     NM_002234        KCNA5
5  chr20   14807660       15240522  NM_001033087      MACROD2
7  chr20   14807660       15240522     NR_037841  MACROD2-AS1
9   chr7    8585813        8868652     NM_152745        NXPH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108006820      108113213  NM_001113228         NTNG1
3   chr14   47825792       47933993  NM_001113498         MDGA2
4   chr16   29495967       29643366     NR_049833     MIR3680-2
5   chr16   29495967       29643366     NR_135305        SMG1P2
7    chr8   58212616       58318320     NR_125818  LOC101929488
8    chr9   39061512       39582073  NM_001085452     SPATA31A1
9    chr9   39061512       39582073     NM_033655       CNTNAP3
10   chr9   39061512       39582073     NR_003528       ZNF658B
11   chr9   39061512       39582073     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143499490      143860305  NM_001123068       PPIAL4G
1    chr1  143499490      143860305     NR_104014     LINC01138
2    chr1  143499490      143860305     NR_106967       MIR6077
3    chr1  143499490      143860305     NR_111930  LOC100132057
4    chr1  165220786      165378085  NM_001174069         LMX1A
5    chr1  165220786      165378085  NM_001256571          RXRG
8    chr1  187146642      187257183     NR_126347     LINC01036
9   chr11  134337978      134623111     NR_033852     LOC283177
10  chr14   19876718       20014401  NM_001145442         POTEM
11  chr14   19876718       20014401     NR_073459       BMS1P18
12  chr14   19876718       20014401     NR_110505  LOC100508046
13  chr14   19876718       20014401     NR_110526       DUXAP10
14  chr14   19876718       20014401     NR_122111     LINC01296
16  chr14   19876718       20014401     NR_133911       BMS1P22
17  chr16   68536054       68684834  NM_001305204         ZFP90
19  chr16   68536054       68684834  NM_001317195          CDH3
20   chr7  110623235      110734077  NM_001099658         LRRN3
21   chr7  110623235      110734077  NM_001244606        IMMP2L
23   chr9   30403490       30555422     NR_046204     LINC01242,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr3   60315428       60471917  NM_001320899          FHIT
1   chr3  118710469      121205398     NM_000187           HGD
2   chr3  118710469      121205398  NM_001015887        IGSF11
3   chr3  118710469      121205398  NM_001099678        LRRC58
4   chr3  118710469      121205398     NM_001125         ADPRH
5   chr3  118710469      121205398  NM_001146156         GSK3B
6   chr3  118710469      121205398  NM_001168271        GPR156
7   chr3  118710469      121205398  NM_001168331        NDUFB4
8   chr3  118710469      121205398  NM_001293225         PLA1A
9   chr3  118710469      121205398  NM_001308330       STXBP5L
10  chr3  118710469      121205398  NM_001308333        POPDC2
11  chr3  118710469      121205398  NM_001320316        MAATS1
12  chr3  118710469      121205398     NM_005191          CD80
13  chr3  118710469      121205398     NM_005513        GTF2E1
14  chr3  118710469      121205398     NM_005694         COX17
15  chr3  118710469      121205398     NM_006952         UPK1B
16  chr3  118710469      121205398     NM_007085         FSTL1
18  chr3  118710469      121205398     NM_016589       TIMMDC1
19  chr3  118710469      121205398     NM_018266       TMEM39A
20  chr3  118710469      121205398     NM_020754      ARHGAP31
21  chr3  118710469      121205398     NM_022002         NR1I2
23  chr3  118710469      121205398     NM_152305       POGLUT1
25  chr3  118710469      121205398     NM_152539       C3orf30
26  chr3  118710469      121205398     NM_173825         RABL3
27  chr3  118710469      121205398     NM_199420          POLQ
28  chr3  118710469      121205398     NM_212543       B4GALT4
29  chr3  118710469      121205398     NR_029584        MIR198
30  chr3  118710469      121205398     NR_046574   B4GALT4-AS1
31  chr3  118710469      121205398     NR_046748  ARHGAP31-AS1
32  chr3  118710469      121205398     NR_049861       MIR5682
33  chr3  118710469      121205398     NR_135570  LOC101926983
35  chr9   11886737       13237095     NM_000550         TYRP1
36  chr9   11886737       13237095  NM_001261407          MPDZ
38  chr9   11886737       13237095     NM_203403       LURAP1L
39  chr9   11886737       13237095     NR_125775   LURAP1L-AS1
40  chr9   11886737       13237095     NR_132976      SNORD137,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48400908       48531834  NM_001005512     OR4A47
1   chr19    1086760        1379998     NM_000455      STK11
2   chr19    1086760        1379998  NM_001001975      ATP5D
3   chr19    1086760        1379998  NM_001039848       GPX4
4   chr19    1086760        1379998  NM_001100122      SBNO2
5   chr19    1086760        1379998  NM_001258328   ARHGAP45
6   chr19    1086760        1379998     NM_001280      CIRBP
11  chr19    1086760        1379998  NM_001316323     POLR2E
13  chr19    1086760        1379998     NM_001405      EFNA2
17  chr19    1086760        1379998     NM_017914   C19orf24
18  chr19    1086760        1379998     NM_032853       MUM1
19  chr19    1086760        1379998     NM_152769      CBARP
20  chr19    1086760        1379998     NM_177401       MIDN
23  chr19    1086760        1379998     NR_027271  CIRBP-AS1
24   chr9   30378039       30491762     NR_046204  LINC01242,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   42660545       42787487  NM_001284306    ZNF106
2  chr15   42660545       42787487     NM_173087     CAPN3
5   chr7   64120213       64233388  NM_001282360    ZNF107
7   chr7   64120213       64233388     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20952827       21077292  NM_001277303        POTEB2
1   chr15   20952827       21077292     NM_207355        POTEB3
2   chr15   20952827       21077292     NR_027992        NBEAP1
3   chr15   20952827       21077292     NR_036062     MIR3118-2
5   chr15   28635434       28767380     NR_033351       GOLGA8F
7   chr15   28635434       28767380     NR_033353       GOLGA8G
9   chr15   28635434       28767380     NR_039734     MIR4509-3
11  chr16   21489318       21589340     NR_002594      SLC7A5P2
12  chr16   21489318       21589340     NR_027155        SMG1P3
13  chr16   21489318       21589340     NR_049833     MIR3680-2
14  chr17   14171552       14349542     NM_006041      HS3ST3B1
15  chr17   14171552       14349542     NR_026880      MGC12916
16   chr2   97505497       97618108  NM_001122646       FAM178B
18   chr2   97505497       97618108     NM_016466       ANKRD39
20   chr2   97505497       97618108     NM_017789        SEMA4C
21   chr2   97505497       97618108     NM_144994       ANKRD23
22   chr2   97505497       97618108     NR_110209  LOC101927053
23   chr2  242404517      242632940  NM_001164356         THAP4
24   chr2  242404517      242632940  NM_001165031         DTYMK
25   chr2  242404517      242632940  NM_001271978         STK25
28   chr2  242404517      242632940  NM_001282983         FARP2
29   chr2  242404517      242632940  NM_001330161          ING5
32   chr2  242404517      242632940     NM_032515           BOK
33   chr2  242404517      242632940     NM_178326         ATG4B
34   chr2  242404517      242632940     NR_033346       BOK-AS1
35   chr2  242404517      242632940     NR_036083       MIR3133
36   chr5   63123842       63413718     NM_000524         HTR1A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16    8656958        8843829     NM_000663          ABAT
3   chr16    8656958        8843829     NM_024109       METTL22
4   chr16   21527271       21696817  NM_001077180        METTL9
5   chr16   21527271       21696817  NM_001161683          OTOA
7   chr16   21527271       21696817     NM_005849         IGSF6
9   chr16   21527271       21696817     NR_002594      SLC7A5P2
10  chr16   21527271       21696817     NR_110930  LOC101927814
11   chr9   30242354       30552095     NR_046204     LINC01242,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  220027142      220154853     NM_004446       EPRS
1   chr1  220027142      220154853     NR_002753    RNU5F-1
2   chr1  220027142      220154853     NR_046437   SLC30A10
3  chr12   16183617       16340272  NM_001300779       DERA
4  chr13   71684124       71836226     NR_047699  LINC00348
5  chr14   45713066       45935279     NM_018353   MIS18BP1
6  chr18    8084060        8237310     NM_002845      PTPRM
7   chr5   17697351       17885531     NR_134286  LOC646241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  107973833      108117717  NM_001079874          VAV3
1    chr1  107973833      108117717  NM_001113228         NTNG1
5   chr15   21045407       21261540  NM_001277303        POTEB2
6   chr15   21045407       21261540     NM_207355        POTEB3
7   chr15   21045407       21261540     NR_028506         NF1P2
8   chr15   21045407       21261540     NR_040094     LINC01193
9   chr15   21045407       21261540     NR_049895     MIR5701-2
11  chr15   28667777       28793217     NR_033351       GOLGA8F
12  chr15   28667777       28793217     NR_033353       GOLGA8G
13  chr15   28667777       28793217     NR_039734     MIR4509-3
15  chr20   14627112       14796138     NM_080676       MACROD2
16  chr22   20613538       20782552  NM_001256523         ZNF74
17  chr22   20613538       20782552     NM_153334        SCARF2
18  chr22   20613538       20782552     NR_136569     LOC729461
19  chr22   20613538       20782552     NR_136572  LOC101927859
20   chr8    6936166        7314021  NM_001081551      DEFB103A
21   chr8    6936166        7314021  NM_001164457       ZNF705G
22   chr8    6936166        7314021  NM_001205266        DEFB4B
23   chr8    6936166        7314021  NM_001256873       USP17L1
24   chr8    6936166        7314021  NM_001256874       USP17L4
25   chr8    6936166        7314021     NM_058200       SPAG11B
28   chr8    6936166        7314021     NR_003668    DEFB109P1B
29   chr8    6936166        7314021     NR_027000     LINC00965
32   chr8    6936166        7314021     NR_027423        FAM66B,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr2  110218104      110529911  NM_001099289    SH3RF3
1   chr2  110218104      110529911  NM_001321504    SEPT10
3   chr2  110218104      110529911     NM_023016    SOWAHC
4  chr22   17252647       17396685     NM_175878      XKR3
5  chr22   17252647       17396685     NR_003607   HSFY1P1
6   chr3    6984352        7144961     NM_181874      GRM7, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  112418719      112696453  NM_001270945  LOC643355
1    chr1  112418719      112696453     NM_172198      KCND3
2    chr1  112418719      112696453     NR_046619  KCND3-AS1
3   chr11   31246945       31599060  NM_001304274     IMMP1L
4   chr11   31246945       31599060     NM_019040       ELP4
5   chr11   31246945       31599060     NM_181706    DNAJC24
6   chr11   31246945       31599060     NM_181807      DCDC1
7   chr11   67284107       67723219     NM_000695    ALDH3B2
8   chr11   67284107       67723219     NM_000852      GSTP1
10  chr11   67284107       67723219  NM_001166102     NDUFV1
11  chr11   67284107       67723219  NM_001243750      NUDT8
12  chr11   67284107       67723219  NM_001318496      CABP2
13  chr11   67284107       67723219     NM_005995      TBX10
14  chr11   67284107       67723219     NM_080658       ACY3
16  chr11   67284107       67723219     NR_024249   FAM86C2P
17  chr11   67284107       67723219     NR_033791     DOC2GP
18  chr11   67284107       67723219     NR_130935   C11orf72
19  chr16   22213313       22766180  NM_001135865     NPIPB5
20  chr16   22213313       22766180  NM_001258033     POLR3E
21  chr16   22213313       22766180     NM_001802       CDR2
22  chr16   22213313       22766180     NM_013302      EEF2K
23  chr16   22213313       22766180     NR_003676  LOC653786
24  chr16   22213313       22766180     NR_027154     SMG1P1
25  chr16   22213313       22766180     NR_027460     RRN3P3
26  chr16   22213313       22766180     NR_136333    MFSD13B,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0   chr1   14884683       15213226  NM_015209      KAZN
2  chr20   14624729       14750069  NM_080676   MACROD2,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr5  152193765      152705986  NR_109877  LINC01470,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  242699898      244118019  NM_001206729       AKT3
2    chr1  242699898      244118019     NM_006642    SDCCAG8
3    chr1  242699898      244118019     NM_014812     CEP170
5    chr1  242699898      244118019     NR_029401  LINC01347
6    chr1  242699898      244118019     NR_033883  LOC339529
7    chr1  242699898      244118019     NR_039824    MIR4677
8   chr17   78157826       78262620     NM_000199       SGSH
9   chr17   78157826       78262620  NM_001166349   SLC26A11
10  chr17   78157826       78262620  NM_001256071     RNF213
11  chr17   78157826       78262620  NM_001257970     CARD14
16  chr18   61779698       61939089     NR_027245  LINC00305
17  chr18   61779698       61939089     NR_033881  LOC284294
18  chr18   61779698       61939089     NR_033983  LINC01538
19   chr7   64106388       65777034     NM_000048        ASL
20   chr7   64106388       65777034     NM_000181       GUSB
21   chr7   64106388       65777034  NM_001007253     ERV3-1
23   chr7   64106388       65777034  NM_001160183     ZNF138
24   chr7   64106388       65777034  NM_001282360     ZNF107
25   chr7   64106388       65777034  NM_001287532      ZNF92
27   chr7   64106388       65777034     NM_003596      TPST1
28   chr7   64106388       65777034     NM_015852     ZNF117
29   chr7   64106388       65777034     NM_021148     ZNF273
30   chr7   64106388       65777034     NM_173517   VKORC1L1
31   chr7   64106388       65777034     NR_002961    SNORA22
32   chr7   64106388       65777034     NR_003110     CCT6P1
33   chr7   64106388       65777034     NR_024548       CRCP
34   chr7   64106388       65777034     NR_027392    INTS4P2
35   chr7   64106388       65777034     NR_033416     CCT6P3
36   chr7   64106388       65777034     NR_038378  LOC441242
40   chr7   64106388       65777034     NR_106898    MIR6839
41   chr7  110633907      110853131  NM_001099658      LRRN3
42   chr7  110633907      110853131  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr13  113100079      113768054     NM_000131          F7
1   chr13  113100079      113768054  NM_001112732       MCF2L
2   chr13  113100079      113768054  NM_001286278     TUBGCP3
8   chr13  113100079      113768054     NM_015205      ATP11A
9   chr13  113100079      113768054     NM_207440    ATP11AUN
10  chr13  113100079      113768054     NR_034002   MCF2L-AS1
11  chr13  113100079      113768054     NR_046661  ATP11A-AS1
13  chr18   63524854       64194384  NM_001317214        CDH7
15  chr18   63524854       64194384     NM_021153       CDH19
17   chr5  167284801      167437637  NM_001080428       TENM2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  185969024      186304197  NM_001303232       PRG4
1   chr1  185969024      186304197     NM_003292        TPR
2   chr1  185969024      186304197     NM_031935      HMCN1
3  chr13   67266501       67449654     NM_020403      PCDH9
4  chr13   67266501       67449654     NR_046527  PCDH9-AS2
5   chr5   59641526       59777810  NM_001165899      PDE4D
6   chr6   91073810       91272619     NM_145332     MAP3K7,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   48345956       48519603  NM_001004702     OR4C3
1   chr11   48345956       48519603  NM_001005512    OR4A47
2   chr11   48345956       48519603  NM_001005513    OR4C45
3   chr12    1015821        1140917  NM_001297419     RAD52
7   chr12    1015821        1140917  NM_001301248      ERC1
8   chr12    1015821        1140917     NM_018979      WNK1
10  chr15   28296388       28415617     NM_000275      OCA2
12  chr15   28296388       28415617     NM_004667     HERC2
13  chr17   21860238       21963748     NR_027084  FLJ36000
14   chr7   64105379       64311605  NM_001160183    ZNF138
15   chr7   64105379       64311605  NM_001282360    ZNF107
18   chr7   64105379       64311605     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  131434690      131651454  NM_001048209        NTM
1   chr11  131434690      131651454     NR_126159    NTM-AS1
2   chr13   63373784       63708320     NR_120403  LINC00448
3    chr3  105476157      105579338  NM_001321786       CBLB
9    chr8   16507175       17082854     NM_016353     ZDHHC2
10   chr8   16507175       17082854     NM_019851      FGF20
11   chr8   16507175       17082854     NM_181723      MICU3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   19952253       20065833     NM_000754          COMT
3   chr22   19952253       20065833  NM_001283116        TANGO2
6   chr22   19952253       20065833     NM_001670         ARVCF
8   chr22   19952253       20065833     NR_029706        MIR185
9    chr9   72328896       72473569  NM_001010940      C9orf135
10   chr9   72328896       72473569  NM_001099666         PTAR1
11   chr9   72328896       72473569     NR_038833  C9orf135-AS1
13   chr9  108466965      109058194     NM_018112       TMEM38B,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   68000639       68157167  NM_001127384    CTNNA3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   12662065       12807852  NM_001013630   AADACL4
1   chr1   12662065       12807852  NM_001103170   AADACL3
2   chr1   12662065       12807852  NM_001319225     DHRS3
4   chr1   12662065       12807852     NM_152290  C1orf158
5   chr1   91899634       92078199  NM_001134419      CDC7
7   chr3   41287045       41449628  NM_001322500      ULK4
9   chr5   82371596       82475106  NM_001318012     XRCC4
11  chr5   82371596       82475106     NM_174909  TMEM167A
12  chr7  110586793      110793767  NM_001099658     LRRN3
13  chr7  110586793      110793767  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102434683      102740577     NR_110211         OLFM3
1    chr1  152440260      152653371     NM_019060         CRCT1
2    chr1  152440260      152653371     NM_032563         LCE3D
3    chr1  152440260      152653371     NM_178429         LCE2C
4    chr1  152440260      152653371     NM_178430         LCE2D
5    chr1  152440260      152653371     NM_178431         LCE3A
6    chr1  152440260      152653371     NM_178433         LCE3B
7    chr1  152440260      152653371     NM_178434         LCE3C
8    chr1  152440260      152653371     NM_178435         LCE3E
9    chr1  152440260      152653371     NM_178438         LCE5A
10  chr15   30239133       31018181  NM_001039841     ARHGAP11B
11  chr15   30239133       31018181  NM_001282472       GOLGA8J
12  chr15   30239133       31018181  NM_001282484       GOLGA8R
13  chr15   30239133       31018181  NM_001282490       GOLGA8H
14  chr15   30239133       31018181  NM_001301025          TJP1
15  chr15   30239133       31018181     NM_139320      CHRFAM7A
16  chr15   30239133       31018181     NR_026771  DKFZP434L187
17  chr15   30239133       31018181     NR_026858        ULK4P1
18  chr15   30239133       31018181     NR_026859        ULK4P3
19  chr15   30239133       31018181     NR_033933       GOLGA8T
20  chr15   30239133       31018181     NR_038253  LOC100288637,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   37858624       37976664     NR_135110  LOC105376633
1  chr11   48404984       48745742  NM_001005512        OR4A47
2  chr15   30253520       30354892  NM_001301025          TJP1
3  chr20   14794194       15292664  NM_001033087       MACROD2
5  chr20   14794194       15292664     NR_037841   MACROD2-AS1
7   chr9   44304455       44434137     NR_121564  LOC101927827
8   chr9   44304455       44434137     NR_126050  LOC103908605,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  144691416      144810645  NM_001277444      NBPF9
1   chr1  144691416      144810645  NM_001278267     NBPF20
2   chr1  144691416      144810645     NR_102405      NBPF8
3  chr13   63303795       63405997     NR_047029  LINC00448,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   46164854       46289319  NM_001286341      SPERT
2  chr13   46164854       46289319     NM_182542    ERICH6B
3  chr13   46164854       46289319     NR_125786  LINC01055
4   chr7   79052917       79479490     NM_012301      MAGI2
5   chr7   79052917       79479490     NR_038343  MAGI2-AS3,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr3  176586274      177125168  NM_001321193    TBL1XR1
2  chr3  176586274      177125168     NR_047465  LINC00501, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr12   27162868       27919545  NM_001029874       REP15
1   chr12   27162868       27919545  NM_001080406    C12orf71
2   chr12   27162868       27919545  NM_001145010       SMCO2
3   chr12   27162868       27919545  NM_001146221      MANSC4
4   chr12   27162868       27919545  NM_001190864      MRPS35
5   chr12   27162868       27919545  NM_001248002      ARNTL2
6   chr12   27162868       27919545  NM_001271811       MED21
7   chr12   27162868       27919545     NM_015000      STK38L
8   chr12   27162868       27919545     NM_016551      TM7SF3
9   chr12   27162868       27919545     NM_177444     PPFIBP1
10  chr12   27162868       27919545     NR_109975  ARNTL2-AS1
11  chr15   66919596       67076085     NM_005585       SMAD6
12  chr15   66919596       67076085     NR_110372   LINC01169
13   chr9   28555996       28742111  NM_001258282      LINGO2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr2   50950964       51110676  NM_001330082        NRXN1
1  chr20   14732089       14927649     NM_080676      MACROD2
2  chr20   14732089       14927649     NR_037841  MACROD2-AS1
4   chr5  151323051      151632792     NR_109876   CTB-12O2.1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   72716437       72863836     NM_013381      TRHDE
1   chr16   68574104       68999984  NM_001305204      ZFP90
3   chr16   68574104       68999984  NM_001317184       CDH1
4   chr16   68574104       68999984  NM_001317195       CDH3
5   chr16   68574104       68999984     NM_024562     TANGO6
6   chr16   68574104       68999984     NR_106988  MIR7641-2
7   chr22   19906181       20042781     NM_000754       COMT
10  chr22   19906181       20042781  NM_001282512     TXNRD2
11  chr22   19906181       20042781  NM_001283116     TANGO2
14  chr22   19906181       20042781     NM_001670      ARVCF
17  chr22   19906181       20042781     NR_029706     MIR185
18  chr22   19906181       20042781     NR_039918    MIR4761
19   chr4  169238402      169360008  NM_001012967     DDX60L
21   chr4  169238402      169360008     NM_017631      DDX60
22   chr7  110508484      110811225  NM_001099658      LRRN3
23   chr7  110508484      110811225  NM_001244606     IMMP2L
25   chr8    2084245        2223201     NM_003970      MYOM2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr12   41736045       42032776  NM_001164595     PDZRN4
2  chr20   14613415       14743132     NM_080676    MACROD2
3   chr3  162873988      163371828     NR_033945  LINC01192,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   25814838       25939224     NM_024490        ATP10A
1   chr15   30259748       30427199  NM_001282472       GOLGA8J
2   chr15   30259748       30427199  NM_001301025          TJP1
3   chr15   30259748       30427199     NR_026859        ULK4P3
4    chr3   60392044       60522365  NM_001320899          FHIT
5    chr7    6662920        7327841  NM_001099697      RSPH10B2
6    chr7    6662920        7327841  NM_001278559        ZNF316
7    chr7    6662920        7327841     NM_006956         ZNF12
8    chr7    6662920        7327841     NM_017560        ZNF853
9    chr7    6662920        7327841     NM_020156       C1GALT1
10   chr7    6662920        7327841     NM_198097         CCZ1B
11   chr7    6662920        7327841     NR_002217        PMS2CL
12   chr7    6662920        7327841     NR_034022  LOC100131257
13   chr7    6662920        7327841     NR_037454       MIR3683
14   chr7    6662920        7327841     NR_108073  LOC101927354
15   chr7   64101077       64203320  NM_001282360        ZNF107
17   chr7   64101077       64203320     NR_106898       MIR6839
18   chr9   38986323       39215985     NM_033655       CNTNAP3, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr17   29378624       29547722  NM_000267        NF1
2  chr17   29378624       29547722  NR_039886    MIR4733
3   chr9   30351877       30482359  NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28606315       28753233     NR_033351       GOLGA8F
1   chr15   28606315       28753233     NR_033353       GOLGA8G
2   chr15   28606315       28753233     NR_039734     MIR4509-3
4   chr16    9253006        9470738     NR_135195  LOC101927009
5    chr2  185192479      185300425     NR_039638     MIR548AE1
6    chr3  155980917      157399038  NM_001004316         LEKR1
7    chr3  155980917      157399038  NM_001099777        PQLC2L
9    chr3  155980917      157399038  NM_001167911         VEPH1
12   chr3  155980917      157399038  NM_001184717        TIPARP
15   chr3  155980917      157399038  NM_001308185         CCNL1
16   chr3  155980917      157399038  NM_001308197          SSR3
19   chr3  155980917      157399038  NM_001308217        KCNAB1
21   chr3  155980917      157399038     NM_002852          PTX3
28   chr3  155980917      157399038     NR_003284       PA2G4P4
30   chr3  155980917      157399038     NR_027954    TIPARP-AS1
31   chr3  155980917      157399038     NR_034007     LINC00880
32   chr3  155980917      157399038     NR_034008     LINC00881
33   chr3  155980917      157399038     NR_038387     LINC00886
34   chr3  155980917      157399038     NR_046618    KCNAB1-AS1
35   chr3  155980917      157399038     NR_135546  LOC105374177
36   chr7   75100907       75590613     NM_000941           POR
37   chr7   75100907       75590613  NM_001040457        RHBDD2
38   chr7   75100907       75590613  NM_001099415       POM121C
39   chr7   75100907       75590613  NM_001243198          HIP1
40   chr7   75100907       75590613  NM_001306141        SPDYE5
41   chr7   75100907       75590613     NM_002991         CCL24
42   chr7   75100907       75590613     NM_006072         CCL26
43   chr7   75100907       75590613     NR_002955      SNORA14A
44   chr7   75100907       75590613     NR_028059        PMS2P3
45   chr7   75100907       75590613     NR_039795       MIR4651,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83745347       83890420  NM_001142699          DLG2
4   chr11  134236078      134491144     NM_054025        B3GAT1
5   chr11  134236078      134491144     NM_138342        GLB1L2
6   chr11  134236078      134491144     NR_033852     LOC283177
7   chr20   14698287       14827946     NM_080676       MACROD2
8   chr20   40669855       41402695     NM_133170         PTPRT
9   chr20   40669855       41402695     NR_110004  LOC101927159
10   chr5   98667934       99090776     NR_110562  CTD-2151A2.1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63139482       63266083     NR_047029  LINC00448
1    chr7   24287372       24394125     NM_000905        NPY
2    chr7  110706305      112131571  NM_001099658      LRRN3
3    chr7  110706305      112131571  NM_001134468     LSMEM1
4    chr7  110706305      112131571  NM_001197079      IFRD1
6    chr7  110706305      112131571  NM_001244606     IMMP2L
8    chr7  110706305      112131571     NM_014705      DOCK4
9    chr7  110706305      112131571     NM_021994     ZNF277
12   chr7  110706305      112131571     NR_103806  DOCK4-AS1
14   chr9     453905        1127749  NM_001130865      DMRT2
15   chr9     453905        1127749  NM_001190458      DOCK8
16   chr9     453905        1127749  NM_001256876      KANK1
19   chr9     453905        1127749     NM_021240      DMRT3
20   chr9     453905        1127749     NM_021951      DMRT1
24   chr9     453905        1127749     NR_110643  LINC01230,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr5   20428524       20728382  NM_001291956     CDH18,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   40274208       40482122  NM_001258419        LRRC4C
2    chr2  133668014      134079756     NM_207363        NCKAP5
3    chr2  133668014      134079756     NR_110294  LOC101928161
4    chr2  133668014      134079756     NR_135572  LOC101928185
5   chr22   19937043       20614784     NM_000754          COMT
8   chr22   19937043       20614784  NM_001190326         DGCR8
9   chr22   19937043       20614784  NM_001242313      TMEM191B
10  chr22   19937043       20614784  NM_001243537       CCDC188
11  chr22   19937043       20614784  NM_001278639        RANBP1
14  chr22   19937043       20614784  NM_001283116        TANGO2
17  chr22   19937043       20614784     NM_001670         ARVCF
19  chr22   19937043       20614784     NM_013373        ZDHHC8
20  chr22   19937043       20614784     NM_015672        RIMBP3
21  chr22   19937043       20614784     NM_022727        TRMT2A
22  chr22   19937043       20614784     NM_023004         RTN4R
23  chr22   19937043       20614784     NM_033257        DGCR6L
24  chr22   19937043       20614784     NR_003563       PI4KAP1
25  chr22   19937043       20614784     NR_026919     LINC00896
26  chr22   19937043       20614784     NR_029706        MIR185
27  chr22   19937043       20614784     NR_031618       MIR1286
28  chr22   19937043       20614784     NR_031706       MIR1306
29  chr22   19937043       20614784     NR_037412       MIR3618
30  chr22   19937043       20614784     NR_038460     LOC284865
31  chr22   19937043       20614784     NR_039918       MIR4761
32  chr22   19937043       20614784     NR_106874       MIR6816
33  chr22   19937043       20614784     NR_136560       FAM230A
34  chr22   19937043       20614784     NR_136572  LOC101927859,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   10506714       10617556  NM_001256160    ATF7IP2
2   chr3     814185         942076     NR_110118  LINC01266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21530428       21918608  NM_001077180        METTL9
1   chr16   21530428       21918608  NM_001161683          OTOA
3   chr16   21530428       21918608  NM_001310148        NPIPB4
4   chr16   21530428       21918608     NM_005849         IGSF6
7   chr16   21530428       21918608     NR_002594      SLC7A5P2
8   chr16   21530428       21918608     NR_003370        RRN3P1
9   chr16   21530428       21918608     NR_110930  LOC101927814
10  chr18     607069         884366  NM_001012716        TYMSOS
11  chr18     607069         884366     NM_001071          TYMS
12  chr18     607069         884366  NM_001126123        ENOSF1
13  chr18     607069         884366  NM_001289036         CLUL1
17  chr18     607069         884366     NM_005433          YES1
20   chr4  165949005      166090021  NM_001100389       TMEM192
21   chr4  165949005      166090021     NM_152620        TRIM60
22   chr6   65515670       65674580  NM_001142800           EYS
23   chr9   14903319       16497381  NM_001039697        SNAPC3
24   chr9   14903319       16497381  NM_001128217         PSIP1
25   chr9   14903319       16497381  NM_001168339        TTC39B
27   chr9   14903319       16497381  NM_001271829       C9orf92
29   chr9   14903319       16497381     NM_017637          BNC2
31   chr9   14903319       16497381     NM_144966         FREM1
32   chr9   14903319       16497381     NM_173550       CCDC171
33   chr9   14903319       16497381     NR_003920     LOC389705,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   36197114       36534010     NR_039735    MIR4510
1    chr2  108767303      108879839  NM_001008743    SULT1C3
3    chr2  108767303      108879839     NR_131251  LINC01594
4    chr4   93960131       94255946     NM_001510      GRID2
5    chr5  161156971      161349458     NM_000806     GABRA1
10   chr5  161156971      161349458     NR_126372  LINC01202,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   97425331       97570756     NM_000110       DPYD
1   chr1   97425331       97570756     NR_046590   DPYD-AS1
2  chr21   22633173       23152442     NM_004540      NCAM2
3  chr21   22633173       23152442     NR_038872  LINC00317
4  chr21   22633173       23152442     NR_109958  LINC01425
5   chr4      69219         198008  NM_001039127     ZNF718
6   chr4      69219         198008  NM_001286052     ZNF595,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67659468       67866392  NM_001127384        CTNNA3
2   chr11    4785795        4963805  NM_001004749        OR51A7
3   chr11    4785795        4963805  NM_001004752        OR51F1
4   chr11    4785795        4963805  NM_001004753        OR51F2
5   chr11    4785795        4963805  NM_001004758        OR51S1
6   chr11    4785795        4963805  NM_001004759        OR51T1
7   chr11    4785795        4963805  NM_001005177        OR52R1
8   chr11    4785795        4963805  NM_001005237        OR51G1
9   chr11    4785795        4963805  NM_001005238        OR51G2
10  chr12   57723044       58011763  NM_001080156       ARHGAP9
12  chr12   57723044       58011763  NM_001111270      ARHGEF25
13  chr12   57723044       58011763  NM_001146258       PIP4K2C
14  chr12   57723044       58011763  NM_001160045          GLI1
16  chr12   57723044       58011763  NM_001261412         DCTN2
17  chr12   57723044       58011763  NM_001286245          DTX3
19  chr12   57723044       58011763  NM_001330122        R3HDM2
20  chr12   57723044       58011763     NM_004083         DDIT3
21  chr12   57723044       58011763     NM_004984         KIF5A
22  chr12   57723044       58011763     NM_004990          MARS
23  chr12   57723044       58011763     NM_005538         INHBC
25  chr12   57723044       58011763     NM_031479         INHBE
27  chr12   57723044       58011763     NM_052897          MBD6
29  chr12   57723044       58011763     NR_030346        MIR616
30  chr12   57723044       58011763     NR_106816       MIR6758
31  chr12   72701220       73357833     NM_013381         TRHDE
32  chr16    7006935        7167246  NM_001142334        RBFOX1
35  chr18   56046257       56427063  NM_001144964        NEDD4L
39  chr18   56046257       56427063  NM_001289967  LOC101927322
40  chr18   56046257       56427063     NM_006785         MALT1
42  chr18   56046257       56427063     NM_052947         ALPK2
43  chr18   56046257       56427063     NR_029667        MIR122
44  chr18   56046257       56427063     NR_039899       MIR3591
45  chr18   56046257       56427063     NR_132963      SNORA108
46   chr2  242415758      242606882  NM_001164356         THAP4
47   chr2  242415758      242606882  NM_001271978         STK25
50   chr2  242415758      242606882     NM_014808         FARP2
52   chr2  242415758      242606882     NM_032515           BOK
53   chr2  242415758      242606882     NM_178326         ATG4B
54   chr2  242415758      242606882     NR_033346       BOK-AS1
55   chr2  242415758      242606882     NR_036083       MIR3133
56   chr7   85983868       86359209     NM_000840          GRM3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   89104066       89256422  NM_001143837       NOX4
6   chr15   28754637       28862868     NR_033351    GOLGA8F
7   chr15   28754637       28862868     NR_033353    GOLGA8G
8    chr4   69141813       69376780  NM_001031732     YTHDC1
9    chr4   69141813       69376780     NM_014058  TMPRSS11E
10   chr4  189397238      189577222     NR_033869  LINC01060
11   chr6    5115595        5238717  NM_001164840      LYRM4
14   chr6    5115595        5238717     NR_037462    MIR3691
15   chr6    5115595        5238717     NR_126015  LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   61886990       62033810     NM_006255         PRKCH
1   chr14   61886990       62033810     NR_110416  LOC101927780
3    chr2   35653532       35782624     NR_039629      MIR548AD
4    chr4  182055608      182303358     NR_033918     LINC00290
5    chr4  188309394      188422846     NR_038931     LOC339975
6    chr5   59577554       59730491  NM_001165899         PDE4D
7    chr7   75769378       76207436  NM_001102594          DTX2
9    chr7   75769378       76207436  NM_001110199         SRRM3
10   chr7   75769378       76207436  NM_001110354           ZP3
11   chr7   75769378       76207436     NM_001540         HSPB1
13   chr7   75769378       76207436     NM_012479         YWHAG
14   chr7   75769378       76207436     NM_030570         UPK3B
15   chr7   75769378       76207436     NM_080744         SSC4D
16   chr7   75769378       76207436     NR_003262        FDPSP2
17   chr7   75769378       76207436     NR_029411  LOC100133091,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr13   67234609       67337208     NM_020403     PCDH9
1   chr2   69597408       69750419  NM_001244710     GFPT1
2   chr2   69597408       69750419     NM_014911      AAK1
3   chr2   69597408       69750419     NM_015700      NFU1
4   chr2   69597408       69750419     NR_003705  SNORA36C
5   chr2  212963060      213111661  NM_001042599     ERBB4
6   chr7  110716816      110818825  NM_001099658     LRRN3
7   chr7  110716816      110818825  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48273944       48399713  NM_001004702         OR4C3
1   chr11   48273944       48399713  NM_001004725         OR4S1
2   chr11   48273944       48399713  NM_001004726         OR4X1
3   chr11   48273944       48399713  NM_001005513        OR4C45
4   chr15   28719024       28905143     NR_033351       GOLGA8F
5   chr15   28719024       28905143     NR_033353       GOLGA8G
6   chr15   28719024       28905143     NR_036443       HERC2P9
7   chr15   28719024       28905143     NR_039734     MIR4509-3
8    chr4  130540643      130679571     NR_110753  LOC101927282
9    chr5   63863168       64028056  NM_001029875        RGS7BP
10   chr5   63863168       64028056  NM_001164442       FAM159B
11   chr5   63863168       64028056     NM_173829      SREK1IP1
13   chr7  110982727      111093474  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    4318510        4912914  NM_001004137     OR52M1
1   chr11    4318510        4912914  NM_001004751     OR51D1
2   chr11    4318510        4912914  NM_001004752     OR51F1
3   chr11    4318510        4912914  NM_001004753     OR51F2
4   chr11    4318510        4912914  NM_001004758     OR51S1
5   chr11    4318510        4912914  NM_001004759     OR51T1
6   chr11    4318510        4912914  NM_001005161     OR52B4
7   chr11    4318510        4912914  NM_001005169     OR52I1
8   chr11    4318510        4912914  NM_001005170     OR52I2
9   chr11    4318510        4912914  NM_001005171     OR52K1
10  chr11    4318510        4912914  NM_001005172     OR52K2
11  chr11    4318510        4912914  NM_001005177     OR52R1
12  chr11    4318510        4912914     NM_003141     TRIM21
13  chr11    4318510        4912914     NM_018073     TRIM68
14  chr11    4318510        4912914     NM_030774     OR51E2
15  chr11    4318510        4912914     NM_144663   C11orf40
16  chr11    4318510        4912914     NM_152430     OR51E1
17  chr11   48285192       48458472  NM_001004702      OR4C3
18  chr11   48285192       48458472  NM_001004725      OR4S1
19  chr11   48285192       48458472  NM_001004726      OR4X1
20  chr11   48285192       48458472  NM_001005513     OR4C45
21  chr15   20932820       21225907  NM_001277303     POTEB2
22  chr15   20932820       21225907     NM_207355     POTEB3
23  chr15   20932820       21225907     NR_027992     NBEAP1
24  chr15   20932820       21225907     NR_028506      NF1P2
25  chr15   20932820       21225907     NR_036062  MIR3118-2
26  chr15   20932820       21225907     NR_040094  LINC01193
27  chr15   20932820       21225907     NR_049895  MIR5701-2
29  chr19   21609398       21760987  NM_001001415     ZNF429
30  chr19   21609398       21760987     NM_175910     ZNF493
31  chr19   21609398       21760987     NR_037194  LINC00664
32   chr2   97213371       97509543  NM_001115016     KANSL3
33   chr2   97213371       97509543  NM_001293083     FER1L5
34   chr2   97213371       97509543  NM_001319085     ARID5A
36   chr2   97213371       97509543  NM_001322354     LMAN2L
37   chr2   97213371       97509543     NM_017623      CNNM3
38   chr2   97213371       97509543     NM_020184      CNNM4
40   chr2   97213371       97509543     NM_144994    ANKRD23
41   chr2   97213371       97509543     NR_036074    MIR3127,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10    5138429        5254921  NM_001253908    AKR1C3
2  chr10    5138429        5254921     NM_001818    AKR1C4
4  chr10    5138429        5254921     NR_027916   AKR1C8P
5  chr10   53048058       53189781  NM_001098512     PRKG1
7  chr10   53048058       53189781     NR_030336    MIR605
8  chr13   54754214       55026471     NR_031628   MIR1297,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152429875      152546546     NM_019060         CRCT1
1    chr1  152429875      152546546     NM_178435         LCE3E
2    chr1  152429875      152546546     NM_178438         LCE5A
3   chr14   81699803       82167941  NM_001244984         SEL1L
4   chr14   81699803       82167941  NM_001256430         STON2
7   chr14   81699803       82167941     NR_109999  LOC100506700
8   chr14   81699803       82167941     NR_110074     LINC01467
9    chr7   80068832       80413439     NM_000072          CD36
12   chr7   80068832       80413439  NM_001102386         GNAT3
18   chr7   80068832       80413439     NM_006379        SEMA3C,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr3  145749847      145910378     NM_000935     PLOD2
1   chr3  145749847      145910378  NM_001128304    PLSCR4
3   chr5   82369712       82471905  NM_001318012     XRCC4
5   chr5   82369712       82471905     NM_174909  TMEM167A
6   chr8    7204855        7480167  NM_001040705  DEFB107B
7   chr8    7204855        7480167  NM_001081551  DEFB103A
8   chr8    7204855        7480167  NM_001164457   ZNF705G
9   chr8    7204855        7480167  NM_001205266    DEFB4B
10  chr8    7204855        7480167  NM_001282478   PRR23D2
11  chr8    7204855        7480167  NM_001282479   PRR23D1
12  chr8    7204855        7480167     NM_058200   SPAG11B
16  chr8    7204855        7480167     NM_080389  DEFB104A
17  chr8    7204855        7480167     NM_152250  DEFB105A
18  chr8    7204855        7480167     NM_152251  DEFB106A
19  chr8    7204855        7480167     NR_027423    FAM66B
20  chr8    7204855        7480167     NR_046343  FAM90A7P,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr7   64067794       64356503  NM_001160183        ZNF138
1  chr7   64067794       64356503  NM_001282360        ZNF107
3  chr7   64067794       64356503     NR_077227  LOC100128885
5  chr7   64067794       64356503     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   29799233       30031651  NM_001301025          TJP1
3   chr15   29799233       30031651     NM_015307      FAM189A1
4   chr15   29799233       30031651     NR_135221  LOC100130111
5   chr16    6548616        6657474  NM_001308117        RBFOX1
7   chr19   20277904       20973359  NM_001076675        ZNF626
8   chr19   20277904       20973359  NM_001159293        ZNF737
9   chr19   20277904       20973359     NM_052852        ZNF486
11  chr19   20277904       20973359     NR_036053       MIR1270
13  chr19   20277904       20973359     NR_036455       ZNF826P
14   chr7   64030682       64141223  NM_001282360        ZNF107
15   chr7   64030682       64141223     NR_033245     LOC641746
16   chr7   64030682       64141223     NR_077227  LOC100128885
18   chr7   64030682       64141223     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14667978       16076502  NM_001033087      MACROD2
2  chr20   14667978       16076502     NR_037841  MACROD2-AS1
4  chr20   14667978       16076502     NR_130924    LOC613266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143090510      143282888     NR_110761  LOC102723769
1   chr11   63455834       63559151  NM_001144936      C11orf95
2   chr11   63455834       63559151  NM_001265591          RTN3
3   chr16   21461631       21614881  NM_001077180        METTL9
5   chr16   21461631       21614881     NR_002594      SLC7A5P2
6   chr16   21461631       21614881     NR_027155        SMG1P3
7   chr16   21461631       21614881     NR_049833     MIR3680-2
8   chr16   21461631       21614881     NR_110930  LOC101927814
9   chr16   21532915       21732731  NM_001077180        METTL9
10  chr16   21532915       21732731  NM_001161683          OTOA
12  chr16   21532915       21732731     NM_005849         IGSF6
15  chr16   21532915       21732731     NR_110930  LOC101927814
16   chr3  172067052      172357910  NM_001135095        FNDC3B
17   chr3  172067052      172357910  NM_001146276         NCEH1
18   chr3  172067052      172357910  NM_001190942       TNFSF10
20   chr3  172067052      172357910     NM_004122          GHSR,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   54598761       54822653  NM_001080534    UNC13C
2   chr2  242498931      242673176  NM_001164356     THAP4
3   chr2  242498931      242673176  NM_001165031     DTYMK
4   chr2  242498931      242673176  NM_001330161      ING5
8   chr2  242498931      242673176     NM_032515       BOK
9   chr2  242498931      242673176     NM_178326     ATG4B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102393438      102522878     NR_110211         OLFM3
1   chr10   68021346       68367015  NM_001127384        CTNNA3
3   chr16   76613143       76767830     NR_110934  LOC101928203
4   chr20   25368975       25836466  NM_001042472        ABHD12
5   chr20   25368975       25836466  NM_001290261        ZNF337
6   chr20   25368975       25836466  NM_001318226          NINL
9   chr20   25368975       25836466     NM_021067         GINS1
10  chr20   25368975       25836466     NM_152667          NANP
11  chr20   25368975       25836466     NR_026714       FAM182B
13  chr20   25368975       25836466     NR_110001  LOC101926935
14  chr20   25368975       25836466     NR_126465    ZNF337-AS1
17  chr20   25368975       25836466     NR_135006  LOC105372582
18  chr20   25368975       25836466     NR_135512  LOC105379511
19   chr3     778460         947917     NR_110118     LINC01266,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    4779985        4907052  NM_001004752     OR51F1
1   chr11    4779985        4907052  NM_001004753     OR51F2
2   chr11    4779985        4907052  NM_001004758     OR51S1
3   chr11    4779985        4907052  NM_001004759     OR51T1
4   chr11    4779985        4907052  NM_001005177     OR52R1
5   chr11    4777889        4931094  NM_001004749     OR51A7
6   chr11    4777889        4931094  NM_001004752     OR51F1
7   chr11    4777889        4931094  NM_001004753     OR51F2
8   chr11    4777889        4931094  NM_001004758     OR51S1
9   chr11    4777889        4931094  NM_001004759     OR51T1
10  chr11    4777889        4931094  NM_001005177     OR52R1
11   chr7   64082069       65756496     NM_000048        ASL
12   chr7   64082069       65756496     NM_000181       GUSB
13   chr7   64082069       65756496  NM_001007253     ERV3-1
15   chr7   64082069       65756496  NM_001160183     ZNF138
16   chr7   64082069       65756496  NM_001282360     ZNF107
17   chr7   64082069       65756496  NM_001287532      ZNF92
19   chr7   64082069       65756496     NM_003596      TPST1
20   chr7   64082069       65756496     NM_015852     ZNF117
21   chr7   64082069       65756496     NM_021148     ZNF273
22   chr7   64082069       65756496     NM_173517   VKORC1L1
23   chr7   64082069       65756496     NR_002961    SNORA22
24   chr7   64082069       65756496     NR_003110     CCT6P1
25   chr7   64082069       65756496     NR_024548       CRCP
26   chr7   64082069       65756496     NR_027392    INTS4P2
27   chr7   64082069       65756496     NR_033416     CCT6P3
28   chr7   64082069       65756496     NR_038378  LOC441242
32   chr7   64082069       65756496     NR_106898    MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4544452        4745550  NM_001004137        OR52M1
1   chr11    4544452        4745550  NM_001004751        OR51D1
2   chr11    4544452        4745550  NM_001005169        OR52I1
3   chr11    4544452        4745550  NM_001005170        OR52I2
4   chr11    4544452        4745550     NM_018073        TRIM68
5   chr11    4544452        4745550     NM_030774        OR51E2
6   chr11    4544452        4745550     NM_144663      C11orf40
7   chr11    4544452        4745550     NM_152430        OR51E1
8   chr12   27198750       27300977  NM_001080406      C12orf71
9   chr15   82708434       83178111  NM_001164465     GOLGA6L10
10  chr15   82708434       83178111  NM_001291420      GOLGA6L9
15  chr15   82708434       83178111     NR_004847      UBE2Q2P2
16  chr15   82708434       83178111     NR_026811     GOLGA2P10
19  chr15   82708434       83178111     NR_045529     ADAMTS7P1
20  chr15   82708434       83178111     NR_102747     LOC727751
22  chr15   82708434       83178111     NR_111943         RPS17
24  chr15   82708434       83178111     NR_111962    GOLGA6L17P
25  chr15   82708434       83178111     NR_120378  LOC102724034
26  chr21   23098049       23199824     NR_038872     LINC00317
27  chr21   23098049       23199824     NR_109958     LINC01425
28   chr6    1850150        1995671  NM_001253846          GMDS,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   68399445       68580538  NM_001127384     CTNNA3
2  chr16   21818755       21950761  NM_001310148     NPIPB4
3  chr16   21818755       21950761     NR_003370     RRN3P1
4   chr3    2221149        2325765  NM_001206955      CNTN4
6   chr4  133419298      133677607     NR_126401  LINC01256, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4822708        5098020  NM_001001916        OR52J3
1   chr11    4822708        5098020  NM_001004748        OR51A2
2   chr11    4822708        5098020  NM_001004749        OR51A7
3   chr11    4822708        5098020  NM_001004753        OR51F2
4   chr11    4822708        5098020  NM_001004755        OR51L1
5   chr11    4822708        5098020  NM_001004758        OR51S1
6   chr11    4822708        5098020  NM_001004759        OR51T1
7   chr11    4822708        5098020  NM_001005164        OR52E2
8   chr11    4822708        5098020  NM_001005177        OR52R1
9   chr11    4822708        5098020  NM_001005237        OR51G1
10  chr11    4822708        5098020  NM_001005238        OR51G2
11  chr11    4822708        5098020  NM_001005329        OR51A4
12  chr11    4822708        5098020     NM_021801         MMP26
13  chr13   86327085       86434947     NM_032229       SLITRK6
14  chr17    3339057        3476081     NM_000049          ASPA
16  chr17    3339057        3476081  NM_001170696       SPATA22
21  chr17    3339057        3476081     NM_018727         TRPV1
26  chr17    3339057        3476081     NM_145068         TRPV3
27  chr21   22367208       22478724     NM_004540         NCAM2
28   chr3  131301831      131414442  NM_001289112         CPNE4
31   chr4  161584352      162323583  NM_001128428         FSTL5
32   chr5  104435694      104565485     NR_000039       RAB9BP1
33   chr7   63942048       64101457  NM_001130022        ZNF680
35   chr7   63942048       64101457     NR_033245     LOC641746
36   chr7   63942048       64101457     NR_077227  LOC100128885,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   67946692       68229095  NM_001127384      CTNNA3
2   chr10   88948647       89181846  NM_001099338      NUTM2A
3   chr10   88948647       89181846  NM_001330112      FAM35A
5   chr10   88948647       89181846     NR_024397  NUTM2A-AS1
6   chr10   88948647       89181846     NR_029408   LINC00863
7   chr10   88948647       89181846     NR_046091   LINC00864
8   chr10   88948647       89181846     NR_075100      NUTM2D
10  chr15   28542518       28654672     NM_004667       HERC2
11  chr15   28542518       28654672     NR_033351     GOLGA8F
12  chr15   28542518       28654672     NR_033353     GOLGA8G,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  244324605      244630360  NM_001012970  C1orf100
1  chr1  244324605      244630360     NM_001126      ADSS
2  chr1  244324605      244630360  NM_001242340  C1orf101
3  chr2   50742280       51079370  NM_001330082     NRXN1
4  chr2   50742280       51079370     NR_130470   MIR8485
5  chr7  110476123      111118165  NM_001099658     LRRN3
6  chr7  110476123      111118165  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr3  116122924      116835526  NM_001318915      LSAMP
1   chr3  116122924      116835526     NR_015391      TUSC7
2   chr3  116122924      116835526     NR_039649    MIR4447
3   chr3  116122924      116835526     NR_121607  LINC00901
4   chr4   71379000       71913561     NM_000788        DCK
5   chr4   71379000       71913561  NM_001037442      RUFY3
6   chr4   71379000       71913561  NM_001098477      GRSF1
8   chr4   71379000       71913561  NM_001244766      MOB1B
10  chr4   71379000       71913561  NM_001286731       AMTN
15  chr4   71379000       71913561     NM_016519       AMBN
16  chr4   71379000       71913561     NM_020368       UTP3
17  chr4   71379000       71913561     NM_031889       ENAM
18  chr4   71379000       71913561     NM_144646     JCHAIN,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  242682281      242788987     NM_152666       PLD5
1    chr2   51142354       51256926  NM_001330079      NRXN1
4   chr22   32318391       32628580     NM_000343     SLC5A1
5   chr22   32318391       32628580  NM_001010859   C22orf42
6   chr22   32318391       32628580  NM_001098527      RFPL2
10  chr22   32318391       32628580  NM_001302819   C22orf24
11  chr22   32318391       32628580     NM_003405      YWHAH
13  chr22   32318391       32628580     NM_014227     SLC5A4
15  chr22   32318391       32628580     NR_040114    AP1B1P1
16   chr9   30391033       30991236     NR_046204  LINC01242,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr2  112427959      112895594     NM_006343      MERTK
1  chr2  112427959      112895594     NM_022662     ANAPC1
2  chr2  112427959      112895594     NM_032824    TMEM87B
3  chr2  112427959      112895594     NR_039929  MIR4771-2
4  chr3  197208636      197425373  NM_001145642      RUBCN
6  chr3  197208636      197425373     NM_203314       BDH1
8  chr3  197208636      197425373     NR_003266  LOC220729
9  chr3  197208636      197425373     NR_030627     MIR922,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr13   40345093       40526348  NM_001145079      COG6
1   chr8    8355649        8626844     NM_194284    CLDN23,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr15   28657209       28791736  NR_033351    GOLGA8F
1  chr15   28657209       28791736  NR_033353    GOLGA8G
2  chr15   28657209       28791736  NR_039734  MIR4509-3
4   chr5   17718434       17845376  NR_134286  LOC646241,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   67310720       67421736     NM_000852       GSTP1
1   chr11   67310720       67421736  NM_001166102      NDUFV1
2   chr11   67310720       67421736  NM_001243750       NUDT8
3   chr11   67310720       67421736     NM_005995       TBX10
4   chr11   67310720       67421736     NM_080658        ACY3
6   chr11   67310720       67421736     NR_033791      DOC2GP
7   chr11   67310720       67421736     NR_130935    C11orf72
8   chr13   59888941       61049434  NM_001042517      DIAPH3
9   chr13   59888941       61049434  NM_001146070       TDRD3
15  chr13   59888941       61049434     NR_046539  DIAPH3-AS1
16  chr13   59888941       61049434     NR_046540  DIAPH3-AS2
17  chr13   59888941       61049434     NR_047022   LINC00434,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   68024622       68147551  NM_001127384     CTNNA3
2   chr2   52037850       52167715     NR_135237  LOC730100,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr7   64079951       64253231  NM_001282360     ZNF107
2  chr7   64079951       64253231     NR_106898    MIR6839
3  chr9   39118921       39473498  NM_001085452  SPATA31A1
4  chr9   39118921       39473498     NM_033655    CNTNAP3
5  chr9   39118921       39473498     NR_003528    ZNF658B
6  chr9   39118921       39473498     NR_026803    FAM74A1, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   38026534       38139148  NM_001310135          TTC6
1  chr14   38026534       38139148     NM_004496         FOXA1
2   chr5  152252580      152441568     NR_109877     LINC01470
3   chr6  155445612      155878474  NM_001001346        CLDN20
4   chr6  155445612      155878474  NM_001010927         TIAM2
6   chr6  155445612      155878474     NM_015718          NOX3
7   chr6  155445612      155878474     NM_016020         TFB1M
8   chr6  155445612      155878474     NR_134596  LOC105378068,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr7   56997380       57196854  NM_033273     ZNF479
1  chr7   56997380       57196854  NR_036246  MIR4283-1
2  chr9    9850848       10429522  NM_002839      PTPRD,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   65404119       65517571     NM_003613       CILP
1   chr15   65404119       65517571     NM_005707      PDCD7
2   chr15   65404119       65517571     NM_006660       CLPX
3   chr16   28394487       28666926     NM_000086       CLN3
5   chr16   28394487       28666926  NM_001042483      NUPR1
6   chr16   28394487       28666926     NM_001054    SULT1A2
7   chr16   28394487       28666926  NM_001199142      EIF3C
12  chr16   28394487       28666926  NM_001310136     NPIPB8
13  chr16   28394487       28666926  NM_001317857     EIF3CL
14  chr16   28394487       28666926     NM_018690      APOBR
15  chr16   28394487       28666926     NM_138414      SGF29
16  chr16   28394487       28666926     NM_145659       IL27
18  chr16   28394487       28666926     NM_177529    SULT1A1
21  chr16   28394487       28666926     NR_107058  MIR6862-2
22   chr3    2213203        2356388  NM_001206955      CNTN4
24   chr5   16957844       17178401     NR_027253  LOC285696
25   chr7   14879924       14999010     NM_004080       DGKB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244972513      245183160  NM_001143943        EFCAB2
2    chr1  244972513      245183160  NM_001312871         COX20
4    chr1  244972513      245183160     NM_004501        HNRNPU
7    chr1  244972513      245183160     NR_111907  LOC101928068
8    chr1  244972513      245183160     NR_132782      SNORA100
9   chr12    5108309        5440661     NM_002234         KCNA5
10  chr12    5108309        5440661     NR_120476  LOC101929584
12   chr9   28569205       28978308  NM_001258282        LINGO2
14   chr9   28569205       28978308     NR_030597        MIR876
15   chr9   28569205       28978308     NR_030618        MIR873,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr6    5103822        5264934  NM_001164840      LYRM4
2  chr6    5103822        5264934  NM_001318872      FARS2
5  chr6    5103822        5264934     NR_037462    MIR3691
6  chr6    5103822        5264934     NR_126015  LYRM4-AS1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr4  169246524      169379322  NM_001012967    DDX60L
2  chr7  110613584      111416816  NM_001099658     LRRN3
3  chr7  110613584      111416816  NM_001244606    IMMP2L
4  chr7  110613584      111416816     NM_014705     DOCK4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  185914604      188033733     NM_000963         PTGS2
1    chr1  185914604      188033733  NM_001164245       C1orf27
2    chr1  185914604      188033733  NM_001303232          PRG4
3    chr1  185914604      188033733  NM_001311193       PLA2G4A
4    chr1  185914604      188033733     NM_002597           PDC
5    chr1  185914604      188033733     NM_003292           TPR
6    chr1  185914604      188033733     NM_022375          OCLM
8    chr1  185914604      188033733     NM_031935         HMCN1
9    chr1  185914604      188033733     NR_125801        PACERR
10   chr1  185914604      188033733     NR_126002  LOC102724919
11   chr1  185914604      188033733     NR_126347     LINC01036
12   chr1  185914604      188033733     NR_132374     LINC01037
13  chr10   27611269       27745887  NM_001034842        PTCHD3
14  chr10   27611269       27745887     NR_138082       ARMC4P1
15  chr11    4228345        4397457  NM_001005161        OR52B4
16   chr3     812158         914360     NR_110118     LINC01266
17   chr9    6006416        6128613  NM_001017969      KIAA2026
18   chr9    6006416        6128613  NM_001243202        RANBP6
19   chr9    6006416        6128613     NR_039811       MIR4665,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   93083166       93409628     NM_004466          GPC5
1   chr13   93083166       93409628     NR_046520      GPC5-AS1
4   chr13   93083166       93409628     NR_049840      MIR548AS
5   chr14   45660794       45838524  NM_001308133         FANCM
6   chr14   45660794       45838524     NM_018353      MIS18BP1
7    chr4  169192569      169384947  NM_001012967        DDX60L
9    chr4  169192569      169384947     NM_017631         DDX60
10   chr9   44268675       44523150     NR_121564  LOC101927827
11   chr9   44268675       44523150     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72640709       72785079     NM_013381         TRHDE
1   chr12   72640709       72785079     NR_026836     TRHDE-AS1
3   chr19   33119902       33967846     NM_000285          PEPD
4   chr19   33119902       33967846  NM_001105570        NUDT19
5   chr19   33119902       33967846  NM_001110822        TDRD12
6   chr19   33119902       33967846  NM_001252296         CEBPG
7   chr19   33119902       33967846  NM_001285829         CEBPA
8   chr19   33119902       33967846  NM_001300978        FAAP24
10  chr19   33119902       33967846     NM_002333          LRP3
11  chr19   33119902       33967846     NM_014270        SLC7A9
12  chr19   33119902       33967846     NM_019849       SLC7A10
13  chr19   33119902       33967846     NM_032139       ANKRD27
14  chr19   33119902       33967846     NM_032816         CEP89
15  chr19   33119902       33967846     NM_033103         RHPN2
16  chr19   33119902       33967846     NM_173479         WDR88
17  chr19   33119902       33967846     NM_207391        RGS9BP
18  chr19   33119902       33967846     NR_026887     CEBPA-AS1
19  chr19   33119902       33967846     NR_135270       GPATCH1
20   chr2   97513109       97621324  NM_001122646       FAM178B
22   chr2   97513109       97621324     NM_016466       ANKRD39
24   chr2   97513109       97621324     NM_017789        SEMA4C
25   chr2   97513109       97621324     NR_110209  LOC101927053
26  chr20    5165847        5385071     NM_003818          CDS2
27  chr20    5165847        5385071     NM_144773        PROKR2
28   chr8     175018        1603517  NM_001042415        ZNF596
30   chr8     175018        1603517  NM_001256113          TDRP
31   chr8     175018        1603517  NM_001277161        DLGAP2
35   chr8     175018        1603517  NM_001303100        ERICH1
37   chr8     175018        1603517     NM_012173        FBXO25
40   chr8     175018        1603517     NR_003572     RPL23AP53
41   chr8     175018        1603517     NR_073397    ERICH1-AS1
42   chr8     175018        1603517     NR_103537        FAM87A
43   chr8     175018        1603517     NR_103863    DLGAP2-AS1
44   chr8     175018        1603517     NR_111948     LOC286083
45   chr8     175018        1603517     NR_134292     LOC401442
46   chr8    8419316        8573412     NM_194284        CLDN23
47   chr9   41469065       41590489  NM_001113541     SPATA31A5
48   chr9   41469065       41590489     NM_015667     SPATA31A7
49   chr9   41469065       41590489     NR_003528       ZNF658B
50   chr9   41469065       41590489     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr2  236657384      236757448  NM_001244888     AGAP1
2   chr3    6356726        7959644     NM_181874      GRM7
3   chr3    6356726        7959644     NR_046606  GRM7-AS1
4   chr3    6356726        7959644     NR_110123  GRM7-AS3
6   chr3    6356726        7959644     NR_131906  GRM7-AS2
7   chr4    8966032       10303821     NM_000798      DRD5
8   chr4    8966032       10303821  NM_001001290    SLC2A9
9   chr4    8966032       10303821  NM_001040448   DEFB131
10  chr4    8966032       10303821  NM_001242326  USP17L25
18  chr4    8966032       10303821  NM_001256852  USP17L10
19  chr4    8966032       10303821  NM_001256853  USP17L12
21  chr4    8966032       10303821  NM_001256854  USP17L11
24  chr4    8966032       10303821  NM_001256855  USP17L13
25  chr4    8966032       10303821  NM_001256857  USP17L17
26  chr4    8966032       10303821  NM_001256860  USP17L19
27  chr4    8966032       10303821  NM_001256861  USP17L20
28  chr4    8966032       10303821  NM_001256894  USP17L15
29  chr4    8966032       10303821     NM_005112      WDR1
31  chr4    8966032       10303821     NR_027279  USP17L6P
32  chr4    8966032       10303821     NR_031688  MIR548I2
33  chr4    8966032       10303821     NR_036090   MIR3138
34  chr4    8966032       10303821     NR_046416  USP17L9P
35  chr6   80957327       81714004     NM_000056    BCKDHB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145273827      145489451  NM_001039888      ANKRD34A
1    chr1  145273827      145489451  NM_001277444         NBPF9
2    chr1  145273827      145489451  NM_001278267        NBPF20
3    chr1  145273827      145489451  NM_001302371        NBPF10
4    chr1  145273827      145489451  NM_001313972         TXNIP
6    chr1  145273827      145489451     NM_032305       POLR3GL
7    chr1  145273827      145489451     NM_145277          HFE2
8    chr1  145273827      145489451     NM_153713         LIX1L
9    chr1  145273827      145489451     NM_203458      NOTCH2NL
10   chr1  145273827      145489451     NR_104217       NBPF25P
11   chr1  145273827      145489451     NR_125967  LOC101928979
12  chr17   14013182       14240760  NM_001007530        CDRT15
13  chr17   14013182       14240760     NM_001303         COX10
14  chr17   14013182       14240760     NM_006041      HS3ST3B1
15  chr17   14013182       14240760     NR_026880      MGC12916
16   chr6    5133233        5234140  NM_001164840         LYRM4
19   chr6    5133233        5234140     NR_037462       MIR3691
20   chr6    5133233        5234140     NR_126015     LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   83744424       86217872  NM_001014811          ME3
1   chr11   83744424       86217872  NM_001142699         DLG2
3   chr11   83744424       86217872  NM_001156474       CCDC81
5   chr11   83744424       86217872  NM_001162951        SYTL2
6   chr11   83744424       86217872  NM_001193537     TMEM126B
8   chr11   83744424       86217872  NM_001206947       PICALM
9   chr11   83744424       86217872  NM_001244735     TMEM126A
10  chr11   83744424       86217872  NM_001286159       CCDC83
11  chr11   83744424       86217872  NM_001322404      HIKESHI
13  chr11   83744424       86217872     NM_003797          EED
18  chr11   83744424       86217872     NM_152723       CCDC89
21  chr11   83744424       86217872     NR_028027       CREBZF
22  chr11   83744424       86217872     NR_106813      MIR6755
23  chr20   14891934       15116033     NM_080676      MACROD2
24  chr20   14891934       15116033     NR_037841  MACROD2-AS1
26   chr4   69322131       69512769     NM_001076      UGT2B15
27   chr4   69322131       69512769     NM_001077      UGT2B17
28   chr4   69322131       69512769     NM_014058    TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  130220578      130359447     NM_133448      TMEM132D
1   chr14   47730353       47892342  NM_001113498         MDGA2
4   chr15   28453143       28841898     NM_004667         HERC2
5   chr15   28453143       28841898     NR_033351       GOLGA8F
7   chr15   28453143       28841898     NR_033353       GOLGA8G
9   chr15   28453143       28841898     NR_039734     MIR4509-3
11  chr16    6719055        8165839  NM_001142334        RBFOX1
15  chr20   40571212       41729653     NM_133170         PTPRT
16  chr20   40571212       41729653     NR_110004  LOC101927159
17  chr22   17215659       17477412  NM_001037814          GAB4
18  chr22   17215659       17477412     NM_175878          XKR3
19  chr22   17215659       17477412     NR_003607       HSFY1P1
20  chr22   17215659       17477412     NR_134584  LOC101929350
21   chr9  116533808      116942673  NM_001318041        ZNF618
22   chr9  116533808      116942673     NM_001633          AMBP
23   chr9  116533808      116942673     NM_032888       COL27A1
24   chr9  116533808      116942673     NM_138424         KIF12,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   19619793       19767014  NM_001142308        MALRD1
1  chr15   98212932       98343902     NR_024172     LINC00923
2   chr3     827417         994868     NR_110118     LINC01266
3   chr5  120555542      120739384     NR_104999  LOC102467226,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   25986085       27214427     NM_000818          GAD2
2   chr10   25986085       27214427  NM_001178122          ABI1
3   chr10   25986085       27214427  NM_001321978         PDSS1
4   chr10   25986085       27214427     NM_017433         MYO3A
5   chr10   25986085       27214427     NM_019043       APBB1IP
6   chr10   25986085       27214427     NR_026793     LINC00264
7   chr10   25986085       27214427     NR_026794   LINC00202-2
8   chr10   25986085       27214427     NR_108067     LINC00836
9   chr10   25986085       27214427     NR_120650  LOC101929073
10  chr10   25986085       27214427     NR_134472  LOC101929117
11  chr11   89066807       89305720  NM_001143837          NOX4
17  chr19   47781763       48100028  NM_001009813         MEIS3
18  chr19   47781763       48100028  NM_001271749         C5AR2
20  chr19   47781763       48100028  NM_001277075        ZNF541
21  chr19   47781763       48100028  NM_001291296          KPTN
24  chr19   47781763       48100028     NM_001736         C5AR1
25  chr19   47781763       48100028     NM_014681         DHX34
26  chr19   47781763       48100028     NM_015063        SLC8A2
28  chr19   47781763       48100028     NR_038452      NAPA-AS1
29  chr19   47781763       48100028     NR_038457          NAPA
30   chr2  110094687      110233566  NM_001099289        SH3RF3
31   chr3  145827397      145939933     NM_000935         PLOD2
32   chr3  145827397      145939933  NM_001128304        PLSCR4
34   chr9  116780355      116967728  NM_001318041        ZNF618
35   chr9  116780355      116967728     NM_001633          AMBP
36   chr9  116780355      116967728     NM_032888       COL27A1
37   chr9  116780355      116967728     NM_138424         KIF12,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   68620415       68726705  NM_001317195      CDH3
1   chr5   31252356       31419742     NM_004932      CDH6
2   chr5   31252356       31419742     NM_013235    DROSHA
3   chr7   80128096       80286725     NM_000072      CD36
6   chr7   80128096       80286725  NM_001102386     GNAT3,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14745765       16276371  NM_001033087      MACROD2
1  chr20   14745765       16276371     NM_024704       KIF16B
3  chr20   14745765       16276371     NR_037841  MACROD2-AS1
5  chr20   14745765       16276371     NR_130924    LOC613266,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr19   34626672       34747052     NM_014686  KIAA0355
1   chr19   34626672       34747052     NM_015578    LSM14A
2   chr21   17833463       17985186     NR_027790  MIR99AHG
4   chr21   17833463       17985186     NR_029480  MIRLET7C
5   chr21   17833463       17985186     NR_029514    MIR99A
6   chr21   17833463       17985186     NR_029694  MIR125B2
15   chr7  110786162      111136632  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  145310055      145422480  NM_001277444         NBPF9
1   chr1  145310055      145422480  NM_001278267        NBPF20
2   chr1  145310055      145422480  NM_001302371        NBPF10
3   chr1  145310055      145422480     NM_145277          HFE2
4   chr1  145310055      145422480     NR_104217       NBPF25P
5   chr1  145310055      145422480     NR_125967  LOC101928979
6  chr13   46972524       47103708     NR_120426     LINC01198
7   chr4   98403994       98545454     NM_174952         STPG2
8   chr4   98403994       98545454     NR_102713     STPG2-AS1
9   chr7   77722613       77909498     NM_012301         MAGI2,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr1  143527975      143701144  NR_106967       MIR6077
1  chr1  143527975      143701144  NR_111930  LOC100132057
2  chr4   47956257       48069447  NM_000087         CNGA1
4  chr4   47956257       48069447  NM_003328           TXK
5  chr4   47956257       48069447  NM_207330        NIPAL1
6  chr4   47956257       48069447  NR_125879  LOC101927157,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48445137       48582222  NM_001005512    OR4A47
1  chr14   45490529       45598880  NM_001308120   FAM179B
2  chr14   45490529       45598880     NM_002013     FKBP3
3  chr14   45490529       45598880     NM_017922    PRPF39
4  chr14   45490529       45598880     NR_003691  SNORD127
5  chr20   14690506       14796196     NM_080676   MACROD2,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr3  162913599      163061660  NR_033945  LINC01192,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  245034362      245290557  NM_001143943        EFCAB2
3  chr1  245034362      245290557     NR_111907  LOC101928068
4  chr7   64109914       64214530  NM_001282360        ZNF107
6  chr7   64109914       64214530     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30303869       30424814  NM_001282472       GOLGA8J
1   chr15   30303869       30424814     NR_026859        ULK4P3
2    chr2   97218499       97345487  NM_001115016        KANSL3
3    chr2   97218499       97345487  NM_001293083        FER1L5
5   chr22   19925659       20273429     NM_000754          COMT
8   chr22   19925659       20273429  NM_001190326         DGCR8
9   chr22   19925659       20273429  NM_001243537       CCDC188
10  chr22   19925659       20273429  NM_001278639        RANBP1
13  chr22   19925659       20273429  NM_001282512        TXNRD2
14  chr22   19925659       20273429  NM_001283116        TANGO2
17  chr22   19925659       20273429     NM_001670         ARVCF
20  chr22   19925659       20273429     NM_013373        ZDHHC8
21  chr22   19925659       20273429     NM_022727        TRMT2A
22  chr22   19925659       20273429     NM_023004         RTN4R
23  chr22   19925659       20273429     NR_026919     LINC00896
24  chr22   19925659       20273429     NR_029706        MIR185
25  chr22   19925659       20273429     NR_031618       MIR1286
26  chr22   19925659       20273429     NR_031706       MIR1306
27  chr22   19925659       20273429     NR_037412       MIR3618
28  chr22   19925659       20273429     NR_038460     LOC284865
29  chr22   19925659       20273429     NR_039918       MIR4761
30  chr22   19925659       20273429     NR_106874       MIR6816
31   chr9   67036638       67358529     NR_002817        AQP7P1
32   chr9   67036638       67358529     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr17   21443418       21554928  NM_001113434     C17orf51
1    chr2  131973883      132094816  NM_001083538        POTEE
2    chr2  131973883      132094816     NR_030728    LOC440910
3   chr20   14797440       15141491     NM_080676      MACROD2
4   chr20   14797440       15141491     NR_037841  MACROD2-AS1
6    chr5   24028620       24275066     NR_131245      C5orf17
7    chr9   12028046       13906962     NM_000550        TYRP1
8    chr9   12028046       13906962  NM_001261407         MPDZ
10   chr9   12028046       13906962     NM_203403      LURAP1L
11   chr9   12028046       13906962     NR_033863     FLJ41200
12   chr9   12028046       13906962     NR_125775  LURAP1L-AS1
13   chr9   12028046       13906962     NR_132976     SNORD137,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr4   69254125       69441010  NM_001077    UGT2B17
1  chr4   69254125       69441010  NM_014058  TMPRSS11E,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr9   30397336       30626998  NR_046204  LINC01242,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   82915707       83106831     NR_033423    DHFRP3
1  chr4     117543         220724  NM_001039127    ZNF718
4  chr4     117543         220724     NR_027481   ZNF876P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245034843      245573737  NM_001143943        EFCAB2
2    chr1  245034843      245573737     NM_018012        KIF26B
4    chr1  245034843      245573737     NR_111907  LOC101928068
5   chr10   68063075       68166398  NM_001127384        CTNNA3
7   chr14   47802235       48150098  NM_001113498         MDGA2
10   chr4  189637593      190930246     NM_004477          FRG1
11   chr4  189637593      190930246     NR_121679     LINC01262
12   chr4  189637593      190930246     NR_132380     LINC01596
13   chr4  189637593      190930246     NR_135513  LOC105379514
14   chr5  106854896      107057915     NM_001962         EFNA5
15   chr7  133279422      133399367     NM_021807         EXOC4
16   chr8  110294807      110463905  NM_001128211        NUDCD1
17   chr8  110294807      110463905  NM_001193557          ENY2
19   chr8  110294807      110463905     NM_177531       PKHD1L1
20   chr9   41840555       42020578     NR_003670        FGF7P3
21   chr9   41840555       42020578     NR_015363         GLIDR
24   chr9   41840555       42020578     NR_126048  LOC102724238
25   chr9   41840555       42020578     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr19   57533630       58118692  NM_001012729          DUXA
1   chr19   57533630       58118692  NM_001015878         AURKC
3   chr19   57533630       58118692  NM_001023561        ZNF749
4   chr19   57533630       58118692  NM_001023563        ZNF805
5   chr19   57533630       58118692  NM_001098491        ZNF419
6   chr19   57533630       58118692  NM_001144068        ZNF772
7   chr19   57533630       58118692  NM_001172773        ZNF548
8   chr19   57533630       58118692  NM_001199295        ZNF549
9   chr19   57533630       58118692  NM_001277090        ZNF550
10  chr19   57533630       58118692  NM_001304334        ZNF773
12  chr19   57533630       58118692  NM_001321145          ZIK1
13  chr19   57533630       58118692  NM_001321981        ZNF530
14  chr19   57533630       58118692  NM_001330617         ZNF17
15  chr19   57533630       58118692  NM_001330622        ZNF460
16  chr19   57533630       58118692     NM_003417        ZNF264
19  chr19   57533630       58118692     NM_017879        ZNF416
20  chr19   57533630       58118692     NM_020633         VN1R1
21  chr19   57533630       58118692     NM_020657        ZNF304
22  chr19   57533630       58118692     NM_020903         USP29
23  chr19   57533630       58118692     NM_052882          ZIM3
24  chr19   57533630       58118692     NM_173631        ZNF547
25  chr19   57533630       58118692     NM_213598        ZNF543
26  chr19   57533630       58118692     NR_002166      TRAPPC2B
29  chr19   57533630       58118692     NR_136529  LOC105372476
30   chr9  116621688      116742621  NM_001318041        ZNF618,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr17    3322773        3706299     NM_000049           ASPA
1   chr17    3322773        3706299  NM_001014764           EMC6
3   chr17    3322773        3706299  NM_001170696        SPATA22
7   chr17    3322773        3706299  NM_001204698        TAX1BP3
9   chr17    3322773        3706299     NM_002208          ITGAE
10  chr17    3322773        3706299     NM_003554          OR1E2
11  chr17    3322773        3706299     NM_004937           CTNS
12  chr17    3322773        3706299     NM_012373          OR3A3
13  chr17    3322773        3706299     NM_013276           SHPK
14  chr17    3322773        3706299     NM_018727          TRPV1
15  chr17    3322773        3706299     NM_031965           GSG2
20  chr17    3322773        3706299     NM_145068          TRPV3
21  chr17    3322773        3706299     NM_175080          P2RX5
22  chr17    3322773        3706299     NR_037928  P2RX5-TAX1BP3
23  chr20    5221391        5358778     NM_144773         PROKR2
24  chr20   14628641       15513478  NM_001033087        MACROD2
26  chr20   14628641       15513478     NR_037841    MACROD2-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   49634551       49781371  NM_001323575         AGBL4
1   chr1   49634551       49781371     NR_125988  LOC101929721
2   chr1  244986834      245093767  NM_001312871         COX20
4   chr1  244986834      245093767     NM_004501        HNRNPU
6   chr1  244986834      245093767     NR_132782      SNORA100
7  chr20   21993472       22122031     NR_038394     LINC01432,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2  110162027      110299112  NM_001099289    SH3RF3
1  chr4   93255201       94375858     NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   82195669       82308223  NM_001297704    ADGRL2
2   chr16   28411340       28616078     NM_000086      CLN3
4   chr16   28411340       28616078  NM_001042483     NUPR1
5   chr16   28411340       28616078     NM_001054   SULT1A2
6   chr16   28411340       28616078  NM_001199142     EIF3C
11  chr16   28411340       28616078  NM_001317857    EIF3CL
12  chr16   28411340       28616078     NM_018690     APOBR
13  chr16   28411340       28616078     NM_138414     SGF29
14  chr16   28411340       28616078     NM_145659      IL27
16   chr3    2344365        2666256  NM_001206955     CNTN4
18   chr4   71355184       71464348  NM_001286731      AMTN
19   chr4   71355184       71464348     NM_016519      AMBN,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67943745       68227238  NM_001127384     CTNNA3
2   chr12   80975158       81168558  NM_001145026      PTPRQ
3   chr12   80975158       81168558     NM_002469       MYF6
4   chr12   80975158       81168558     NM_005593       MYF5
5   chr12   80975158       81168558     NR_120468  LINC01490
6   chr16   76356829       76623852  NM_001322181    CNTNAP4
8   chr17   21278862       21775553  NM_001113434   C17orf51
9   chr17   21278862       21775553  NM_001194958     KCNJ18
10  chr17   21278862       21775553     NM_021012     KCNJ12
11  chr17   48097141       48202481  NM_001199898       PDK2
14  chr17   48097141       48202481  NM_001257359     SAMD14
15  chr17   48097141       48202481     NM_002204      ITGA3
17  chr17   48097141       48202481     NR_038230  LOC284080,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2  110134193      110265994  NM_001099289    SH3RF3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21871331       21996670  NM_001163380      RAB2B
1   chr14   21871331       21996670  NM_001170629       CHD8
2   chr14   21871331       21996670  NM_001303523       TOX4
3   chr14   21871331       21996670     NM_019852     METTL3
6   chr14   21871331       21996670     NR_111966      SALL2
8   chr20    5171328        5284503     NM_003818       CDS2
9   chr20    5171328        5284503     NM_144773     PROKR2
10   chr4   91208899       91502800  NM_001145065     CCSER1
12   chr4  189430370      189560628     NR_033869  LINC01060,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87361265       87484194  NM_001134492        HS2ST1
1    chr1   87361265       87484194     NM_004261       SELENOF
3   chr17    3855901        3961605     NM_015113         ZZEF1
4   chr17    3855901        3961605     NM_174955        ATP2A3
5    chr2  195552717      195815577     NR_110223  LOC101927431
6   chr22   19916938       20120330     NM_000754          COMT
9   chr22   19916938       20120330  NM_001190326         DGCR8
10  chr22   19916938       20120330  NM_001278639        RANBP1
13  chr22   19916938       20120330  NM_001282512        TXNRD2
14  chr22   19916938       20120330  NM_001283116        TANGO2
17  chr22   19916938       20120330     NM_001670         ARVCF
20  chr22   19916938       20120330     NM_013373        ZDHHC8
21  chr22   19916938       20120330     NM_022727        TRMT2A
22  chr22   19916938       20120330     NR_029706        MIR185
23  chr22   19916938       20120330     NR_031706       MIR1306
24  chr22   19916938       20120330     NR_037412       MIR3618
25  chr22   19916938       20120330     NR_039918       MIR4761
26  chr22   19916938       20120330     NR_106874       MIR6816
27   chr5   13178525       14582297     NM_001369         DNAH5
28   chr5   13178525       14582297     NM_019018       FAM105A
29   chr5   13178525       14582297     NR_134469          TRIO
30   chr8    3929831        4031534     NM_033225         CSMD1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr9   28606681       29159548  NM_001258282    LINGO2
2  chr9   28606681       29159548     NR_030597    MIR876
3  chr9   28606681       29159548     NR_030618    MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143618238      143755262     NR_104014     LINC01138
1    chr1  143618238      143755262     NR_106967       MIR6077
2    chr1  143618238      143755262     NR_111930  LOC100132057
3   chr19     900400        1070873  NM_001258328      ARHGAP45
5   chr19     900400        1070873     NM_005224        ARID3A
7   chr19     900400        1070873     NM_019112         ABCA7
8   chr19     900400        1070873     NM_024100         WDR18
9   chr19     900400        1070873     NM_032551        KISS1R
10  chr19     900400        1070873     NM_033420       TMEM259
11  chr19     900400        1070873     NM_138690        GRIN3B
12  chr19     900400        1070873     NM_138774        R3HDM4
13  chr19     900400        1070873     NM_201277          CNN2
14  chr19     900400        1070873     NR_125730        RNU6-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56460997       56767124  NM_001142770        PCDH15
3   chr18   24685048       26273653  NM_001256316         CHST9
4   chr18   24685048       26273653  NM_001308176          CDH2
6   chr18   24685048       26273653     NR_134589  LOC105372038
7    chr2  153092946      153229281     NM_052905         FMNL2
8    chr2  235280129      235405144  NM_001282431         ARL4C
10  chr21   23440349       23958641     NR_038400     LINC00308
11  chr21   23440349       23958641     NR_109959  LOC101927843
12   chr7    9419928        9938338     NR_002790          PER4
13   chr7   80055592       80302549     NM_000072          CD36
16   chr7   80055592       80302549  NM_001102386         GNAT3
22   chr7  152298951      152708247     NM_005431         XRCC2
23   chr7  152298951      152708247     NM_020445        ACTR3B,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  243482768      243585693     NM_006642   SDCCAG8
1    chr1  243482768      243585693     NR_039824   MIR4677
2   chr15   20694717       20895235  NM_001145004  GOLGA6L6
3   chr15   20694717       20895235     NR_027411  GOLGA8CP
4   chr15   20694717       20895235     NR_027992    NBEAP1
5   chr15   20694717       20895235     NR_036432   HERC2P3
6    chr4    9034037        9437701  NM_001242326  USP17L25
14   chr4    9034037        9437701  NM_001256852  USP17L10
15   chr4    9034037        9437701  NM_001256853  USP17L12
17   chr4    9034037        9437701  NM_001256854  USP17L11
20   chr4    9034037        9437701  NM_001256855  USP17L13
21   chr4    9034037        9437701  NM_001256857  USP17L17
22   chr4    9034037        9437701  NM_001256860  USP17L19
23   chr4    9034037        9437701  NM_001256861  USP17L20
24   chr4    9034037        9437701  NM_001256894  USP17L15
25   chr4    9034037        9437701     NR_027279  USP17L6P
26   chr4    9034037        9437701     NR_046416  USP17L9P
27   chr4   75360957       75512331     NM_001657      AREG,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2  242480286      242601587  NM_001164356         THAP4
2  chr2  242480286      242601587     NM_032515           BOK
3  chr2  242480286      242601587     NM_178326         ATG4B
4  chr2  242480286      242601587     NR_033346       BOK-AS1
5  chr7  124930302      125167751     NR_110188  LOC101928283
6  chr9  102071469      102176153     NR_102270          NAMA,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143501379      144014723  NM_001123068       PPIAL4G
1    chr1  143501379      144014723  NM_001287385        FAM72C
2    chr1  143501379      144014723  NM_001345942        FAM72D
6    chr1  143501379      144014723     NR_104014     LINC01138
7    chr1  143501379      144014723     NR_106967       MIR6077
8    chr1  143501379      144014723     NR_111930  LOC100132057
10  chr10  134061166      134161302  NM_001143757        LRRC27
13  chr10  134061166      134161302  NM_001318878        STK32C
21  chr19   21654901       21834039  NM_001001415        ZNF429
22  chr19   21654901       21834039     NR_037194     LINC00664
23   chr7   64102397       64356637  NM_001160183        ZNF138
24   chr7   64102397       64356637  NM_001282360        ZNF107
27   chr7   64102397       64356637     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28157507       28601801     NM_000275          OCA2
2   chr15   28157507       28601801     NM_004667         HERC2
3    chr4   69153350       69344965  NM_001031732        YTHDC1
4    chr4   69153350       69344965     NM_014058     TMPRSS11E
5    chr4  169268622      169439937  NM_001012967        DDX60L
6    chr4  169268622      169439937  NM_001166108         PALLD
8    chr7  110550315      110671127  NM_001244606        IMMP2L
10   chr7  142987775      143088509     NM_000083         CLCN1
11   chr7  142987775      143088509     NM_001224         CASP2
12   chr7  142987775      143088509  NM_001278297       FAM131B
13   chr7  142987775      143088509  NM_001322263  LOC100507507
14   chr7  142987775      143088509     NM_003461           ZYX
15   chr7  142987775      143088509     NM_005232         EPHA1
18   chr7  142987775      143088509     NR_106952       MIR6892,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr9   11966682       15493772     NM_000550        TYRP1
1   chr9   11966682       15493772  NM_001039697       SNAPC3
2   chr9   11966682       15493772  NM_001128217        PSIP1
3   chr9   11966682       15493772  NM_001168339       TTC39B
5   chr9   11966682       15493772  NM_001177704        FREM1
6   chr9   11966682       15493772  NM_001190738         NFIB
7   chr9   11966682       15493772  NM_001261407         MPDZ
11  chr9   11966682       15493772     NM_005454         CER1
15  chr9   11966682       15493772     NM_178566      ZDHHC21
16  chr9   11966682       15493772     NM_203403      LURAP1L
17  chr9   11966682       15493772     NR_003920    LOC389705
18  chr9   11966682       15493772     NR_033863     FLJ41200
19  chr9   11966682       15493772     NR_038194    LINC00583
20  chr9   11966682       15493772     NR_125775  LURAP1L-AS1
21  chr9   11966682       15493772     NR_132976     SNORD137,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   54411131       54878766     NR_047488     LINC00558
1   chr13   54411131       54878766     NR_108062     LINC00458
3    chr2   97131926       97605932  NM_001115016        KANSL3
4    chr2   97131926       97605932  NM_001122646       FAM178B
6    chr2   97131926       97605932  NM_001285485        NEURL3
7    chr2   97131926       97605932  NM_001293083        FER1L5
8    chr2   97131926       97605932  NM_001319085        ARID5A
10   chr2   97131926       97605932  NM_001322354        LMAN2L
11   chr2   97131926       97605932     NM_016466       ANKRD39
13   chr2   97131926       97605932     NM_017623         CNNM3
14   chr2   97131926       97605932     NM_017789        SEMA4C
15   chr2   97131926       97605932     NM_020184         CNNM4
17   chr2   97131926       97605932     NM_144994       ANKRD23
18   chr2   97131926       97605932     NR_036074       MIR3127
21   chr2   97131926       97605932     NR_110209  LOC101927053
22   chr2   97131926       97605932     NR_135564  LOC105373496
23   chr5   82435865       82572298  NM_001318012         XRCC4
25   chr5  114102342      114217937     NR_130785  LOC101927078,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr4  169250362      169406860  NM_001012967    DDX60L,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr4  121617215      121816000     NM_018699     PRDM5
1  chr7    8687638        8799282     NM_152745     NXPH1
2  chr7  110674352      110784015  NM_001099658     LRRN3
3  chr7  110674352      110784015  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  242416387      242547110  NM_001164356         THAP4
1   chr2  242416387      242547110  NM_001271978         STK25
4   chr2  242416387      242547110     NM_014808         FARP2
6   chr2  242416387      242547110     NM_032515           BOK
7   chr2  242416387      242547110     NR_033346       BOK-AS1
8   chr2  242416387      242547110     NR_036083       MIR3133
9   chr4   94206132       96679580  NM_001011516        PDLIM5
10  chr4   94206132       96679580  NM_001128429      SMARCAD1
12  chr4   94206132       96679580     NM_001203        BMPR1B
19  chr4   94206132       96679580     NM_001510         GRID2
20  chr4   94206132       96679580     NM_003728         UNC5C
21  chr4   94206132       96679580     NM_005172         ATOH1
22  chr4   94206132       96679580     NM_014485         HPGDS
24  chr4   94206132       96679580     NR_121610    BMPR1B-AS1
25  chr4   94206132       96679580     NR_125922  LOC101929210
26  chr9   30406874       30533862     NR_046204     LINC01242,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr4   94202441       94317652  NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr18   67786666       67911741  NM_001318520          RTTN
1   chr19   47825947       47987130  NM_001009813         MEIS3
2   chr19   47825947       47987130  NM_001271749         C5AR2
4   chr19   47825947       47987130  NM_001291296          KPTN
7   chr19   47825947       47987130     NM_014681         DHX34
8   chr19   47825947       47987130     NM_015063        SLC8A2
10   chr4   69242837       69344690     NM_014058     TMPRSS11E
11   chr5   16010359       16188369  NM_001102562       MARCH11
12   chr5  114104961      114239316     NR_130785  LOC101927078
13   chr9   41913168       42029535     NR_003670        FGF7P3
14   chr9   41913168       42029535     NR_015363         GLIDR
17   chr9   41913168       42029535     NR_126048  LOC102724238
18   chr9   41913168       42029535     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81496345       81752786     NM_003019         SFTPD
1   chr10   81496345       81752786     NR_002724         MBL1P
2   chr10   81496345       81752786     NR_029407     LOC642361
3   chr10   81496345       81752786     NR_033857       BMS1P21
4   chr10   81496345       81752786     NR_120611    NUTM2B-AS1
7   chr12     668343         820066  NM_001294345         NINJ2
10  chr12     668343         820066     NM_173593      B4GALNT3
11  chr12     668343         820066     NR_122124  LOC100049716
12  chr12     668343         820066     NR_134624  LOC105369595
13  chr12   97974108       98254413     NR_077240     LOC643711,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   97964736       98410423     NR_036189       MIR4303
1   chr12   97964736       98410423     NR_039716       MIR4495
2   chr12   97964736       98410423     NR_077240     LOC643711
4   chr20   14705530       15142027     NM_080676       MACROD2
5   chr20   14705530       15142027     NR_037841   MACROD2-AS1
7   chr22   20104747       20618091  NM_001242313      TMEM191B
8   chr22   20104747       20618091  NM_001243537       CCDC188
9   chr22   20104747       20618091  NM_001278639        RANBP1
12  chr22   20104747       20618091     NM_013373        ZDHHC8
13  chr22   20104747       20618091     NM_015672        RIMBP3
14  chr22   20104747       20618091     NM_022727        TRMT2A
15  chr22   20104747       20618091     NM_023004         RTN4R
16  chr22   20104747       20618091     NM_033257        DGCR6L
17  chr22   20104747       20618091     NR_003563       PI4KAP1
18  chr22   20104747       20618091     NR_026919     LINC00896
19  chr22   20104747       20618091     NR_031618       MIR1286
20  chr22   20104747       20618091     NR_038460     LOC284865
21  chr22   20104747       20618091     NR_136560       FAM230A
22  chr22   20104747       20618091     NR_136572  LOC101927859
23   chr5   28269800       28502612     NR_134265  LOC105374698,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   21470137       21598816     NR_002594   SLC7A5P2
1  chr16   21470137       21598816     NR_027155     SMG1P3
2  chr16   21470137       21598816     NR_049833  MIR3680-2
3  chr18   63220071       64655561  NM_001317214       CDH7
5  chr18   63220071       64655561     NM_021153      CDH19
7   chr3   36163802       36830002     NM_003149       STAC
8   chr3   36163802       36830002     NM_033403      DCLK3, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   12844608       12958496  NM_001009611     PRAMEF4
1    chr1   12844608       12958496  NM_001013631    HNRNPCL1
2    chr1   12844608       12958496  NM_001146181    HNRNPCL3
3    chr1   12844608       12958496  NM_001146344    PRAMEF11
4    chr1   12844608       12958496  NM_001294139     PRAMEF1
5    chr1   12844608       12958496  NM_001302551    HNRNPCL4
7    chr1   12844608       12958496     NM_023014     PRAMEF2
8   chr11   83524105       83983887  NM_001142699        DLG2
12  chr13   54693914       54820515     NR_108062   LINC00458
14   chr8    7838869        8015842     NR_003668  DEFB109P1B
15   chr8    7838869        8015842     NR_027424      FAM66E
16   chr8    7838869        8015842     NR_031689    MIR548I3
17   chr9   17223466       17324373  NM_001114395       CNTLN,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  233705375      234017711     NM_002245     KCNK1
1  chr1  233705375      234017711     NR_039625   MIR4427
2  chr5      97226         362670  NM_001080478   LRRC14B
3  chr5      97226         362670  NM_001242412      AHRR
4  chr5      97226         362670     NM_004168      SDHA
5  chr5      97226         362670     NM_013232     PDCD6
6  chr5      97226         362670     NM_052909  PLEKHG4B
7  chr5      97226         362670     NM_145265   CCDC127
9  chr5      97226         362670     NR_104613     HRAT5,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1   73394908       73805333     NR_110676      LINC01360
2   chr10   67871496       67973723  NM_001127384         CTNNA3
4   chr17    3356604        3684546     NM_000049           ASPA
5   chr17    3356604        3684546  NM_001014764           EMC6
7   chr17    3356604        3684546  NM_001170696        SPATA22
11  chr17    3356604        3684546  NM_001204698        TAX1BP3
13  chr17    3356604        3684546     NM_002208          ITGAE
14  chr17    3356604        3684546     NM_004937           CTNS
15  chr17    3356604        3684546     NM_013276           SHPK
16  chr17    3356604        3684546     NM_018727          TRPV1
17  chr17    3356604        3684546     NM_031965           GSG2
22  chr17    3356604        3684546     NM_145068          TRPV3
23  chr17    3356604        3684546     NM_175080          P2RX5
24  chr17    3356604        3684546     NR_037928  P2RX5-TAX1BP3
25  chr19   47861908       48006543  NM_001009813          MEIS3
26  chr19   47861908       48006543  NM_001291296           KPTN
29  chr19   47861908       48006543     NM_014681          DHX34
30  chr19   47861908       48006543     NM_015063         SLC8A2
31  chr19   47861908       48006543     NR_038452       NAPA-AS1
32  chr19   47861908       48006543     NR_038457           NAPA
33   chr2   50839158       51030773  NM_001330082          NRXN1
34   chr2   50839158       51030773     NR_130470        MIR8485
35   chr3  160032551      160311190  NM_001190241          IFT80
37   chr3  160032551      160311190  NM_001288753           SMC4
38   chr3  160032551      160311190     NM_002268          KPNA4
40   chr3  160032551      160311190     NM_173084         TRIM59
41   chr3  160032551      160311190     NR_003001        SCARNA7
42   chr3  160032551      160311190     NR_029525        MIR16-2
43   chr3  160032551      160311190     NR_029663         MIR15B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   76055699       76242570     NM_000016         ACADM
1    chr1   76055699       76242570  NM_001130058       SLC44A5
5    chr1   76055699       76242570     NR_130749        DLSTP1
6   chr10   19610819       19877810  NM_001142308        MALRD1
7   chr14   42118768       42237017  NM_001346175         LRFN5
8   chr16   15373106       15485843  NM_001277325        NPIPA5
9   chr18   40221960       40357955     NM_002930          RIT2
10  chr18   40221960       40357955     NR_046174     LINC00907
11  chr18   55775783       56023446  NM_001144964        NEDD4L
16   chr7   64105020       66578468     NM_000048           ASL
17   chr7   64105020       66578468     NM_000181          GUSB
18   chr7   64105020       66578468  NM_001007253        ERV3-1
20   chr7   64105020       66578468  NM_001160183        ZNF138
21   chr7   64105020       66578468  NM_001167961         KCTD7
22   chr7   64105020       66578468  NM_001282360        ZNF107
23   chr7   64105020       66578468  NM_001287060       RABGEF1
26   chr7   64105020       66578468  NM_001287532         ZNF92
28   chr7   64105020       66578468     NM_003596         TPST1
29   chr7   64105020       66578468     NM_015852        ZNF117
30   chr7   64105020       66578468     NM_016038          SBDS
31   chr7   64105020       66578468     NM_017994       TMEM248
32   chr7   64105020       66578468     NM_018264          TYW1
33   chr7   64105020       66578468     NM_021148        ZNF273
34   chr7   64105020       66578468     NM_173517      VKORC1L1
35   chr7   64105020       66578468     NR_002961       SNORA22
36   chr7   64105020       66578468     NR_003110        CCT6P1
37   chr7   64105020       66578468     NR_003934    GTF2IRD1P1
38   chr7   64105020       66578468     NR_024548          CRCP
39   chr7   64105020       66578468     NR_026873     LINC00174
40   chr7   64105020       66578468     NR_027392       INTS4P2
41   chr7   64105020       66578468     NR_033416        CCT6P3
42   chr7   64105020       66578468     NR_038378     LOC441242
47   chr7   64105020       66578468     NR_106898       MIR6839
48   chr7   64105020       66578468     NR_110037  LOC100996437
49   chr7   64105020       66578468     NR_111972  GS1-124K5.11
52   chr7   64105020       66578468     NR_134570   GS1-124K5.4
54   chr7   64105020       66578468     NR_135738      GTF2IP23
55   chr7   64105020       66578468     NR_136637     LOC644794
56   chr7  117536393      117876283     NM_016200          LSM8
57   chr7  117536393      117876283     NM_019644        ANKRD7,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2  210233058      210340920  NM_001039538      MAP2
1  chr6  162548456      162737444     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145321129      145559826  NM_001039888      ANKRD34A
1    chr1  145321129      145559826  NM_001184795        PEX11B
2    chr1  145321129      145559826  NM_001277444         NBPF9
3    chr1  145321129      145559826  NM_001278267        NBPF20
4    chr1  145321129      145559826  NM_001280799       ANKRD35
5    chr1  145321129      145559826  NM_001302371        NBPF10
6    chr1  145321129      145559826  NM_001303040        ITGA10
7    chr1  145321129      145559826  NM_001313972         TXNIP
9    chr1  145321129      145559826     NM_005105         RBM8A
11   chr1  145321129      145559826     NM_032305       POLR3GL
12   chr1  145321129      145559826     NM_145277          HFE2
13   chr1  145321129      145559826     NM_153713         LIX1L
14   chr1  145321129      145559826     NR_002328        GNRHR2
18   chr1  145321129      145559826     NR_104217       NBPF25P
19   chr1  145321129      145559826     NR_125967  LOC101928979
20  chr11   89143488       89387906  NM_001143837          NOX4
26  chr16   21536400       21749351  NM_001077180        METTL9
27  chr16   21536400       21749351  NM_001161683          OTOA
29  chr16   21536400       21749351     NM_005849         IGSF6
32  chr16   21536400       21749351     NR_110930  LOC101927814
33   chr6  136966983      137090325     NM_005923        MAP3K5
34   chr6  136966983      137090325     NR_125858  LOC101928461,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  245053274      245157890  NM_001143943        EFCAB2
3   chr1  245053274      245157890     NR_111907  LOC101928068
4  chr13   88023832       88228570     NR_033829     MIR4500HG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2   97299613       97411968  NM_001115016        KANSL3
1    chr2   97299613       97411968  NM_001293083        FER1L5
2    chr2   97299613       97411968  NM_001322354        LMAN2L
5    chr2  212976385      213253682  NM_001042599         ERBB4
6   chr22   19918246       20266016     NM_000754          COMT
9   chr22   19918246       20266016  NM_001190326         DGCR8
10  chr22   19918246       20266016  NM_001243537       CCDC188
11  chr22   19918246       20266016  NM_001278639        RANBP1
14  chr22   19918246       20266016  NM_001282512        TXNRD2
15  chr22   19918246       20266016  NM_001283116        TANGO2
18  chr22   19918246       20266016     NM_001670         ARVCF
21  chr22   19918246       20266016     NM_013373        ZDHHC8
22  chr22   19918246       20266016     NM_022727        TRMT2A
23  chr22   19918246       20266016     NM_023004         RTN4R
24  chr22   19918246       20266016     NR_026919     LINC00896
25  chr22   19918246       20266016     NR_029706        MIR185
26  chr22   19918246       20266016     NR_031618       MIR1286
27  chr22   19918246       20266016     NR_031706       MIR1306
28  chr22   19918246       20266016     NR_037412       MIR3618
29  chr22   19918246       20266016     NR_038460     LOC284865
30  chr22   19918246       20266016     NR_039918       MIR4761
31  chr22   19918246       20266016     NR_106874       MIR6816
32   chr7  110516404      110619373  NM_001244606        IMMP2L
34   chr9   11953245       12913828     NM_000550         TYRP1
35   chr9   11953245       12913828     NM_203403       LURAP1L
36   chr9   11953245       12913828     NR_125775   LURAP1L-AS1
37   chr9   25515867       26393322  NM_001004125         TUSC1
38   chr9   25515867       26393322  NM_001004352  LOC100506422
39   chr9   25515867       26393322     NR_121604     LINC01241,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   99886925      100025823  NM_001284400    LRRC28
2   chr6  162623296      162934609     NM_013988     PARK2
3   chr9   16835475       17681405  NM_001114395     CNTLN
5   chr9   16835475       17681405     NM_003026    SH3GL2
6   chr9   16835475       17681405     NM_017637      BNC2
8   chr9   72306918       72419472  NM_001099666     PTAR1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10    7173324        7366275  NM_001018039    SFMBT2
2   chr10    7173324        7366275     NR_132972  SNORD129
3   chr15   42614866       42920993  NM_001130447     HAUS2
4   chr15   42614866       42920993  NM_001284306    ZNF106
7   chr15   42614866       42920993     NM_003825    SNAP23
8   chr15   42614866       42920993     NM_020759    STARD9
9   chr15   42614866       42920993     NM_153260    LRRC57
10  chr15   42614866       42920993     NM_173087     CAPN3
13  chr15   42614866       42920993     NM_198141      GANC
14  chr18    8073472        8229481     NM_002845     PTPRM
15   chr9   28713754       28817826  NM_001258282    LINGO2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr14   47905154       48401845  NM_001113498        MDGA2
1  chr14   47905154       48401845     NR_037503      MIR548Y
2  chr14   47905154       48401845     NR_039996    LINC00648
3  chr20   14663478       14904547     NM_080676      MACROD2
4  chr20   14663478       14904547     NR_037841  MACROD2-AS1
6   chr9   17157904       17284102  NM_001114395        CNTLN,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   56470414       56574266  NM_001142770     PCDH15
3  chr13   63171192       63357043     NR_047029  LINC00448
4  chr22   17240919       17427038     NM_175878       XKR3
5  chr22   17240919       17427038     NR_003607    HSFY1P1
6   chr6  162851600      163063721     NM_013988      PARK2
7   chr7   93294057       93409734     NR_039796    MIR4652
8   chr7  110330566      110756446  NM_001099658      LRRN3
9   chr7  110330566      110756446  NM_001244606     IMMP2L,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr20   14481250       14736316  NM_080676      MACROD2
1  chr20   14481250       14736316  NR_104193  MACROD2-IT1,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   22358947       22471558  NR_047040  LINC00424,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16    8573430        8699628  NM_001146336   TMEM114
4   chr7   71422209       71531533  NM_001017440     CALN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  153055180      153304177     NM_000427           LOR
1    chr1  153055180      153304177  NM_001010857         LELP1
2    chr1  153055180      153304177  NM_001014291        SPRR2G
3    chr1  153055180      153304177  NM_001014450        SPRR2F
4    chr1  153055180      153304177  NM_001024209        SPRR2E
5    chr1  153055180      153304177  NM_001195571          PRR9
6    chr1  153055180      153304177     NM_020393       PGLYRP4
7    chr1  153055180      153304177     NM_052891       PGLYRP3
8    chr1  153055180      153304177     NR_003062        SPRR2C
9    chr1  153055180      153304177     NR_110685  LOC101928009
10  chr11   67186381       67463655     NM_000695       ALDH3B2
11  chr11   67186381       67463655     NM_000852         GSTP1
12  chr11   67186381       67463655  NM_001018070        CORO1B
14  chr11   67186381       67463655  NM_001078650       TMEM134
15  chr11   67186381       67463655  NM_001166102        NDUFV1
16  chr11   67186381       67463655  NM_001166222        CARNS1
17  chr11   67186381       67463655  NM_001243750         NUDT8
18  chr11   67186381       67463655  NM_001300895         CABP4
20  chr11   67186381       67463655  NM_001302959           AIP
21  chr11   67186381       67463655  NM_001318496         CABP2
22  chr11   67186381       67463655     NM_003952       RPS6KB2
24  chr11   67186381       67463655     NM_004910       PITPNM1
25  chr11   67186381       67463655     NM_005608       PTPRCAP
26  chr11   67186381       67463655     NM_005851       CDK2AP2
27  chr11   67186381       67463655     NM_005995         TBX10
29  chr11   67186381       67463655     NM_080658          ACY3
32  chr11   67186381       67463655     NM_206997        GPR152
33  chr11   67186381       67463655     NR_033791        DOC2GP
35  chr11   67186381       67463655     NR_106810       MIR6752
36  chr11   67186381       67463655     NR_130935      C11orf72
37   chr2   96010339       96174425  NM_001034914        KCNIP3
38   chr2   96010339       96174425  NM_001164464       TRIM43B
40   chr2   96010339       96174425     NM_016044        FAHD2A
41   chr7  123448317      123574828  NM_001174044         SPAM1
44   chr7  123448317      123574828     NM_012269         HYAL4
45   chr7  123448317      123574828     NR_002731        HYALP1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr2   50996216       51152871  NM_001330079     NRXN1
3   chr22   32399440       32554018     NM_000343    SLC5A1
4   chr22   32399440       32554018  NM_001010859  C22orf42
6   chr22   32399440       32554018     NR_040114   AP1B1P1
7    chr4   71376432       71965837     NM_000788       DCK
8    chr4   71376432       71965837  NM_001037442     RUFY3
9    chr4   71376432       71965837  NM_001098477     GRSF1
11   chr4   71376432       71965837  NM_001244766     MOB1B
13   chr4   71376432       71965837  NM_001286731      AMTN
18   chr4   71376432       71965837     NM_016519      AMBN
19   chr4   71376432       71965837     NM_020368      UTP3
20   chr4   71376432       71965837     NM_031889      ENAM
21   chr4   71376432       71965837     NM_144646    JCHAIN
22   chr7   75812591       75921658  NM_001110199     SRRM3
23   chr9  116331482      116507128  NM_001276260      RGS3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48451026       48554248  NM_001005512     OR4A47
1   chr11   83714114       83973268  NM_001142699       DLG2
5   chr16   72611245       72846149  NM_001164766      ZFHX3
7   chr16   72611245       72846149     NR_126330  LINC01572
8    chr3   37836886       38152964     NM_002207      ITGA9
9    chr3   37836886       38152964     NM_005808     CTDSPL
10   chr3   37836886       38152964     NM_006225      PLCD1
11   chr3   37836886       38152964     NM_007337      DLEC1
12   chr3   37836886       38152964     NM_015873       VILL
14   chr3   37836886       38152964     NR_029499    MIR26A1
15   chr3   37836886       38152964     NR_110531  ITGA9-AS1
17   chr6  128657331      128847483  NM_001291982      PTPRK,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   87377773       87530179  NM_001134492    HS2ST1
1    chr1   87377773       87530179     NM_004261   SELENOF
3    chr1  152440728      152618309     NM_019060     CRCT1
4    chr1  152440728      152618309     NM_032563     LCE3D
5    chr1  152440728      152618309     NM_178431     LCE3A
6    chr1  152440728      152618309     NM_178433     LCE3B
7    chr1  152440728      152618309     NM_178434     LCE3C
8    chr1  152440728      152618309     NM_178435     LCE3E
9    chr1  152440728      152618309     NM_178438     LCE5A
10  chr15   26970417       27302440     NM_000810    GABRA5
12  chr15   26970417       27302440  NM_001270873    GABRG3
13  chr15   26970417       27302440  NM_001278631    GABRB3
16   chr9   28588767       28701473  NM_001258282    LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   37626757       38792955     NM_001049         SSTR1
1   chr14   37626757       38792955  NM_001171170      SLC25A21
2   chr14   37626757       38792955  NM_001195296        MIPOL1
3   chr14   37626757       38792955  NM_001310135          TTC6
4   chr14   37626757       38792955     NM_004496         FOXA1
5   chr14   37626757       38792955     NM_175060       CLEC14A
6   chr14   37626757       38792955     NR_033240  SLC25A21-AS1
7   chr14   37626757       38792955     NR_135286     LINC00517
8   chr15   28560386       28705907     NM_004667         HERC2
9   chr15   28560386       28705907     NR_033351       GOLGA8F
10  chr15   28560386       28705907     NR_033353       GOLGA8G
11  chr15   28560386       28705907     NR_039734     MIR4509-3
12  chr16   15435897       15607416  NM_001128423        MPV17L
13  chr16   15435897       15607416  NM_001142469      C16orf45
14  chr16   15435897       15607416  NM_001277325        NPIPA5
16   chr2  129455349      130077806     NR_110278  LOC101927881
17   chr2  129455349      130077806     NR_122040     LOC151121
18   chr7   63936663       64041560  NM_001130022        ZNF680
20   chr7   63936663       64041560     NR_077227  LOC100128885,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48301737       48476375  NM_001004702      OR4C3
1   chr11   48301737       48476375  NM_001004725      OR4S1
2   chr11   48301737       48476375  NM_001005513     OR4C45
3   chr15   28493405       28682393     NM_004667      HERC2
4   chr15   28493405       28682393     NR_033351    GOLGA8F
5   chr15   28493405       28682393     NR_033353    GOLGA8G
6   chr15   28493405       28682393     NR_039734  MIR4509-3
7   chr19   20234634       21197824  NM_001076675     ZNF626
8   chr19   20234634       21197824  NM_001159293     ZNF737
9   chr19   20234634       21197824  NM_001256171      ZNF85
11  chr19   20234634       21197824     NM_052852     ZNF486
13  chr19   20234634       21197824     NR_036053    MIR1270
15  chr19   20234634       21197824     NR_036455    ZNF826P
16  chr20    5130888        5341301     NM_003818       CDS2
17  chr20    5130888        5341301     NM_144773     PROKR2
18   chr7    2663020        2813706  NM_001282440      GNA12
20   chr7    2663020        2813706  NM_001284355       AMZ1
23   chr7    2663020        2813706     NM_025250      TTYH3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  142507730      142890755     NR_046228  ANKRD20A12P
1   chr16   83971240       84168775  NM_001080442      SLC38A8
2   chr16   83971240       84168775  NM_001146051        HSDL1
3   chr16   83971240       84168775     NM_003791       MBTPS1
4   chr16   83971240       84168775     NM_019065       NECAB2
5   chr16   83971240       84168775     NM_182981       OSGIN1
6    chr3  159996415      160162283  NM_001190241        IFT80
8    chr3  159996415      160162283  NM_001288753         SMC4
10   chr3  159996415      160162283     NM_173084       TRIM59
11   chr3  159996415      160162283     NR_029525      MIR16-2
12   chr3  159996415      160162283     NR_029663       MIR15B,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr19   21448292       21668849  NM_001297560     ZNF708
3  chr19   21448292       21668849     NM_145326     ZNF493
5  chr19   21448292       21668849     NR_027130     ZNF738
6  chr19   21448292       21668849     NR_037194  LINC00664
7  chr21   22979154       23110080     NR_038872  LINC00317
8   chr7   82848975       83726430  NM_001178129     SEMA3E
9   chr7   82848975       83726430     NM_006080     SEMA3A,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr9   39115860       39265071  NM_033655   CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   25102882       25473106  NM_001009909     LUZP2
1  chr11   99198434       99360732  NM_001243270     CNTN5
3   chr7    3275106        3638432     NM_152744      SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   38869818       39306315     NR_045000      ACTR3BP5
1   chr10  134035016      136154145     NM_000773        CYP2E1
2   chr10  134035016      136154145  NM_001012508          SPRN
3   chr10  134035016      136154145  NM_001080998         FRG2B
4   chr10  134035016      136154145  NM_001083909        ADGRA1
5   chr10  134035016      136154145  NM_001098483          FUOM
6   chr10  134035016      136154145  NM_001098637        PWWP2B
7   chr10  134035016      136154145     NM_001109         ADAM8
8   chr10  134035016      136154145  NM_001143757        LRRC27
10  chr10  134035016      136154145  NM_001143763         SYCE1
12  chr10  134035016      136154145  NM_001200049        CFAP46
13  chr10  134035016      136154145  NM_001256618       TUBGCP2
16  chr10  134035016      136154145  NM_001318878        STK32C
21  chr10  134035016      136154145  NM_001321042        INPP5A
22  chr10  134035016      136154145  NM_001321617          CALY
23  chr10  134035016      136154145     NM_003577          UTF1
24  chr10  134035016      136154145     NM_004092         ECHS1
26  chr10  134035016      136154145     NM_014468         VENTX
30  chr10  134035016      136154145     NM_138384          MTG1
31  chr10  134035016      136154145     NM_145202         PRAP1
32  chr10  134035016      136154145     NM_145806        ZNF511
33  chr10  134035016      136154145     NM_152643         KNDC1
34  chr10  134035016      136154145     NM_173541      C10orf91
36  chr10  134035016      136154145     NM_177400        NKX6-2
37  chr10  134035016      136154145     NR_002934        SCART1
38  chr10  134035016      136154145     NR_030170        MIR202
39  chr10  134035016      136154145     NR_033789        SPRNP1
40  chr10  134035016      136154145     NR_037509       MIR3944
41  chr10  134035016      136154145     NR_046231     LINC01168
43  chr10  134035016      136154145     NR_108078      MIR202HG
44  chr10  134035016      136154145     NR_109766          PAOX
45  chr10  134035016      136154145     NR_111905    ADGRA1-AS1
46  chr10  134035016      136154145     NR_120626     LINC01166
48  chr10  134035016      136154145     NR_125763     LINC01167
50  chr16   21463660       21628457  NM_001077180        METTL9
52  chr16   21463660       21628457     NR_002594      SLC7A5P2
53  chr16   21463660       21628457     NR_027155        SMG1P3
54  chr16   21463660       21628457     NR_049833     MIR3680-2
55  chr16   21463660       21628457     NR_110930  LOC101927814
56   chr7  152346760      152578811     NM_005431         XRCC2
57   chr7  152346760      152578811     NM_020445        ACTR3B,   chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr4   69266186       69582112     NM_001076     UGT2B15
1  chr4   69266186       69582112     NM_001077     UGT2B17
2  chr4   69266186       69582112     NM_014058   TMPRSS11E
3  chr4  189367065      189724419     NR_033869   LINC01060
4  chr6   65556671       65668181  NM_001142800         EYS
5  chr7    9102258        9876335     NR_002790        PER4
6  chr8  124965792      125104953  NM_001039112      FER1L6
7  chr8  124965792      125104953     NR_040044  FER1L6-AS1
8  chr8  124965792      125104953     NR_103547  FER1L6-AS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102376784      102799793     NR_110211         OLFM3
1   chr10   81520982       81684432     NR_002724         MBL1P
2   chr10   81520982       81684432     NR_029407     LOC642361
3   chr10   81520982       81684432     NR_033857       BMS1P21
4   chr10   81520982       81684432     NR_120611    NUTM2B-AS1
7   chr11   67199743       67667234     NM_000695       ALDH3B2
8   chr11   67199743       67667234     NM_000852         GSTP1
9   chr11   67199743       67667234  NM_001018070        CORO1B
11  chr11   67199743       67667234  NM_001078650       TMEM134
12  chr11   67199743       67667234  NM_001166102        NDUFV1
13  chr11   67199743       67667234  NM_001243750         NUDT8
14  chr11   67199743       67667234  NM_001300895         CABP4
16  chr11   67199743       67667234  NM_001302959           AIP
17  chr11   67199743       67667234  NM_001318496         CABP2
18  chr11   67199743       67667234     NM_003952       RPS6KB2
20  chr11   67199743       67667234     NM_004910       PITPNM1
21  chr11   67199743       67667234     NM_005608       PTPRCAP
22  chr11   67199743       67667234     NM_005851       CDK2AP2
23  chr11   67199743       67667234     NM_005995         TBX10
25  chr11   67199743       67667234     NM_080658          ACY3
28  chr11   67199743       67667234     NM_206997        GPR152
29  chr11   67199743       67667234     NR_024249      FAM86C2P
30  chr11   67199743       67667234     NR_033791        DOC2GP
32  chr11   67199743       67667234     NR_106810       MIR6752
33  chr11   67199743       67667234     NR_130935      C11orf72
34  chr13   63095416       63409527     NR_047029     LINC00448
37  chr17     180083         298526  NM_001013672      C17orf97
38  chr17     180083         298526  NM_001190411        RPH3AL
39  chr17     180083         298526     NM_182705         RFLNB
40  chr17     180083         298526     NR_040011  LOC100506388
41  chr17     180083         298526     NR_136407  LOC105371430
42   chr2   35403144       35798592     NR_039629      MIR548AD
43   chr6   22085406       22320288     NM_000948           PRL
45   chr6   22085406       22320288     NR_015410        CASC15
46   chr6   22085406       22320288     NR_034143         NBAT1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245020646      245996012  NM_001143943        EFCAB2
1    chr1  245020646      245996012  NM_001167740         SMYD3
3    chr1  245020646      245996012     NM_004501        HNRNPU
4    chr1  245020646      245996012     NM_018012        KIF26B
7    chr1  245020646      245996012     NR_111907  LOC101928068
8   chr12   72717206       72862221     NM_013381         TRHDE
9   chr16   21684636       21797967  NM_001161683          OTOA
12   chr3   85460708       85766824  NM_001167675         CADM2
14   chr6  162755850      163422291  NM_001080378         PACRG
16   chr6  162755850      163422291     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   19667653       19914316     NM_006001        TUBA3C
1   chr13   19667653       19914316     NR_027248     ANKRD26P3
2   chr13   19667653       19914316     NR_126054  LOC101928697
3   chr18   14650248       14782040  NM_001145029      ANKRD30B
4    chr6   45087015       45582570  NM_001024630         RUNX2
5    chr6   45087015       45582570  NM_001261823        SUPT3H
7    chr6   45087015       45582570     NR_030313        MIR586
9    chr8  124919823      125032359  NM_001039112        FER1L6
10   chr8  124919823      125032359     NR_040044    FER1L6-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   73403829       73774053     NR_110676     LINC01360
2  chr15   30219192       30678974  NM_001282472       GOLGA8J
3  chr15   30219192       30678974  NM_001301025          TJP1
4  chr15   30219192       30678974     NM_139320      CHRFAM7A
5  chr15   30219192       30678974     NR_026771  DKFZP434L187
6  chr15   30219192       30678974     NR_026859        ULK4P3
7  chr15   30219192       30678974     NR_033933       GOLGA8T
8   chr9   74714940       74860406  NM_001242505           GDA, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    2000931        2590009     NR_038884     LINC00701
1   chr10    2000931        2590009     NR_040253     LINC00700
2   chr10    2000931        2590009     NR_106720       MIR6072
3   chr10    2000931        2590009     NR_136146  LOC105376351
4   chr11   89107591       89447237  NM_001143837          NOX4
5   chr11   89107591       89447237  NM_001271942        TRIM77
10  chr11   89107591       89447237     NM_153696        FOLH1B
12  chr13   95788507       96038118  NM_001301829         ABCC4
14  chr15   28701696       28815148     NR_033351       GOLGA8F
15  chr15   28701696       28815148     NR_033353       GOLGA8G
16  chr15   28701696       28815148     NR_039734     MIR4509-3,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   83510783       83684848  NM_001142699        DLG2
4   chr14   26950266       27058481     NM_002515       NOVA1
6   chr14   80043012       80309441  NM_001272020       NRXN3
9   chr19   33706708       33816371  NM_001285829       CEBPA
10  chr19   33706708       33816371     NM_019849     SLC7A10
11  chr19   33706708       33816371     NR_026887   CEBPA-AS1
12   chr8    6974494        7238967  NM_001164457     ZNF705G
13   chr8    6974494        7238967  NM_001256873     USP17L1
14   chr8    6974494        7238967  NM_001256874     USP17L4
15   chr8    6974494        7238967     NR_003668  DEFB109P1B
16   chr8    6974494        7238967     NR_027000   LINC00965
19   chr8    6974494        7238967     NR_027423      FAM66B,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   27576893       28102622  NM_001034842    PTCHD3
1  chr10   27576893       28102622  NM_001242702       MKX
2  chr10   27576893       28102622  NM_001256411     RAB18
3  chr10   27576893       28102622  NM_001290020     ARMC4
7  chr10   27576893       28102622     NR_121652   MKX-AS1
8  chr10   27576893       28102622     NR_138082   ARMC4P1
9   chr4    3906256        4059129     NR_130741   FAM86EP,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   72331977       72531451     NM_173808         NEGR1
1  chr16   76342883       76761207  NM_001322181       CNTNAP4
3  chr16   76342883       76761207     NR_110934  LOC101928203
4   chr2   56592723       56712385  NM_001080433       CCDC85A
5   chr2  185180470      185350016     NR_039638     MIR548AE1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20698251       20856264  NM_001145004      GOLGA6L6
1   chr15   20698251       20856264     NR_027411      GOLGA8CP
2   chr15   20698251       20856264     NR_036432       HERC2P3
3    chr2   97164100       97293136  NM_001115016        KANSL3
4    chr2   97164100       97293136  NM_001285485        NEURL3
5    chr2   97164100       97293136  NM_001319085        ARID5A
9    chr2   97164100       97293136     NR_135564  LOC105373496
10   chr3   60314982       60538874  NM_001320899          FHIT
11   chr6  162722776      163903683  NM_001080378         PACRG
13   chr6  162722776      163903683     NM_006775           QKI
14   chr6  162722776      163903683     NM_013988         PARK2
15   chr6  162722776      163903683     NR_028390     PACRG-AS1
16   chr6  162722776      163903683     NR_033862  DKFZp451B082
17   chr6  162722776      163903683     NR_037593          CAHM
18   chr6  162722776      163903683     NR_110871     PACRG-AS2
20   chr6  162722776      163903683     NR_122120     PACRG-AS3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   58833305       59139369     NM_000236          LIPC
1   chr15   58833305       59139369  NM_001040450        FAM63B
3   chr15   58833305       59139369     NM_001110        ADAM10
4   chr15   58833305       59139369     NR_073415     HSP90AB4P
5   chr15   58833305       59139369     NR_135474  LOC101928725
6    chr2  107705283      108057398     NR_049853      MIR548AU
7   chr22   20576746       20763617  NM_001256523         ZNF74
8   chr22   20576746       20763617     NR_136569     LOC729461
9   chr22   20576746       20763617     NR_136572  LOC101927859
10   chr7   71504676       71649349  NM_001017440         CALN1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   63135671       63354895     NR_047029  LINC00448
1  chr17   21289404       21550830  NM_001113434   C17orf51
2  chr17   21289404       21550830  NM_001194958     KCNJ18
3  chr17   21289404       21550830     NM_021012     KCNJ12
4   chr2  134057085      134251416     NM_207363     NCKAP5
5   chr7   16671289       16821105  NM_001159767       BZW2
6   chr7   16671289       16821105     NM_014399    TSPAN13
7   chr7   16671289       16821105     NM_020319     ANKMY2,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr2   35679296       36535931  NR_039629  MIR548AD,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   86324321       87632280     NM_032229    SLITRK6
1  chr13   86324321       87632280     NR_132371  LINC00430
2   chr4   93246390       93837619     NM_001510      GRID2
3   chr6   45051675       45251125  NM_001261823     SUPT3H
4   chr6   45051675       45251125     NR_030313     MIR586
5   chr7   18409906       19007313  NM_001204144      HDAC9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12765195       12907926  NM_001013631      HNRNPCL1
1    chr1   12765195       12907926  NM_001080830      PRAMEF12
2    chr1   12765195       12907926  NM_001103170       AADACL3
3    chr1   12765195       12907926  NM_001146181      HNRNPCL3
4    chr1   12765195       12907926  NM_001146344      PRAMEF11
5    chr1   12765195       12907926  NM_001294139       PRAMEF1
6    chr1   12765195       12907926  NM_001302551      HNRNPCL4
8    chr1   12765195       12907926     NM_152290      C1orf158
9    chr2  212937612      213084220  NM_001042599         ERBB4
10  chr22   20058844       20204139  NM_001190326         DGCR8
11  chr22   20058844       20204139  NM_001243537       CCDC188
12  chr22   20058844       20204139  NM_001278639        RANBP1
15  chr22   20058844       20204139     NM_013373        ZDHHC8
16  chr22   20058844       20204139     NM_022727        TRMT2A
17  chr22   20058844       20204139     NR_026919     LINC00896
18  chr22   20058844       20204139     NR_031706       MIR1306
19  chr22   20058844       20204139     NR_037412       MIR3618
20  chr22   20058844       20204139     NR_038460     LOC284865
21  chr22   20058844       20204139     NR_106874       MIR6816
22   chr4   94161938       95160312  NM_001128429      SMARCAD1
24   chr4   94161938       95160312     NM_001510         GRID2
25   chr4   94161938       95160312     NM_005172         ATOH1
27   chr4   94161938       95160312     NR_125922  LOC101929210,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   47787117       48052561  NM_001113498         MDGA2
3   chr7   10839350       10982957     NM_002489        NDUFA4
4   chr7   56999763       57357517     NM_033273        ZNF479
5   chr7   56999763       57357517     NR_030766       GUSBP10
6   chr7   56999763       57357517     NR_036246     MIR4283-1
7   chr7   56999763       57357517     NR_136269  LOC105375297,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11    6692954        6846220  NM_001004489    OR2AG1
1  chr11    6692954        6846220  NM_001004490    OR2AG2
2  chr11    6692954        6846220     NM_003696     OR6A2
3  chr11    6692954        6846220     NM_022061    MRPL17
4  chr11    6692954        6846220     NR_003945    GVINP1
5  chr15   30252510       30401032  NM_001282472   GOLGA8J
6  chr15   30252510       30401032  NM_001301025      TJP1
7  chr15   30252510       30401032     NR_026859    ULK4P3
8   chr6  162298394      162626561     NM_013988     PARK2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr4  161647463      162608046  NM_001128428         FSTL5
1  chr9   41917665       42045255     NR_003670        FGF7P3
2  chr9   41917665       42045255     NR_015363         GLIDR
5  chr9   41917665       42045255     NR_126048  LOC102724238
6  chr9   41917665       42045255     NR_126049     LOC554249,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr3  189628790      189767746  NM_001134418          P3H2
2  chr7   64073942       64200932  NM_001282360        ZNF107
3  chr7   64073942       64200932     NR_077227  LOC100128885
5  chr7   64073942       64200932     NR_106898       MIR6839
6  chr9   41862760       41971159     NR_003670        FGF7P3
7  chr9   41862760       41971159     NR_015363         GLIDR,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2   78274668       78379171  NR_110287  LOC101927948
1  chr2   78274668       78379171  NR_110288  LOC101927967,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68065375       69689331  NM_001127384        CTNNA3
1   chr10   68065375       69689331  NM_001142498         SIRT1
6   chr10   68065375       69689331     NM_021800       DNAJC12
7   chr10   68065375       69689331     NM_022079         HERC4
8   chr10   68065375       69689331     NM_178011        LRRTM3
10  chr10   68065375       69689331     NR_106973       MIR7151
12  chr10   68065375       69689331     NR_111911  LOC101928961
13  chr11   89077270       89203468  NM_001143837          NOX4
18  chr18   61749696       61859359     NR_027245     LINC00305
19  chr18   61749696       61859359     NR_033881     LOC284294,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87669103       87789589  NM_001290053  LOC101927844
1    chr1  245035428      245149461  NM_001143943        EFCAB2
4    chr1  245035428      245149461     NR_111907  LOC101928068
5   chr10   54193879       54620452     NM_000242          MBL2
6   chr10   54193879       54620452     NR_120641     LINC01468
8   chr16   16439429       16573784  NM_001282511        NPIPA8
9   chr16   16439429       16573784     NR_036447        PKD1P1
10  chr16   16439429       16573784     NR_106971     MIR6511A4
11   chr7   75377003       75550172     NM_000941           POR
12   chr7   75377003       75550172  NM_001040457        RHBDD2
13   chr7   75377003       75550172     NM_002991         CCL24
14   chr7   75377003       75550172     NM_006072         CCL26
15   chr7   75377003       75550172     NR_039795       MIR4651
16   chr8  124997882      125247493  NM_001039112        FER1L6
17   chr8  124997882      125247493     NR_040044    FER1L6-AS1
18   chr8  124997882      125247493     NR_103547    FER1L6-AS2
19   chr8  124997882      125247493     NR_125420  LOC101927588
20   chr9   41532542       41647940     NR_003528       ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143089723      143199409     NR_110761  LOC102723769
1   chr17    5571510        5676304     NR_040000     LOC339166
2    chr2   35431448       36026915     NR_039629      MIR548AD
3    chr3   72728401       73398890  NM_001080393        GXYLT2
4    chr3   72728401       73398890  NM_001318026        PPP4R2
7    chr3   72728401       73398890     NM_018029         EBLN2
8    chr3   72728401       73398890     NM_018130          SHQ1
9    chr6  130150095      130426601  NM_001007102       L3MBTL3
10   chr6  130150095      130426601  NM_001010876       TMEM244
13   chr6  162870943      163059740     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245055699      245223205  NM_001143943        EFCAB2
3    chr1  245055699      245223205     NR_111907  LOC101928068
4   chr12  130216809      130467545     NM_133448      TMEM132D
5    chr2  202172805      202666013  NM_001044385       TMEM237
6    chr2  202172805      202666013  NM_001135745          ALS2
7    chr2  202172805      202666013  NM_001168216      ALS2CR11
9    chr2  202172805      202666013  NM_001206864        STRADB
10   chr2  202172805      202666013     NM_015049         TRAK2
12   chr2  202172805      202666013     NM_033066          MPP4
14   chr2  202172805      202666013     NR_110620      ALS2CR12
15  chr20   14802166       15005072     NM_080676       MACROD2
16  chr20   14802166       15005072     NR_037841   MACROD2-AS1
18   chr3  111572976      111726986  NM_001008273        TAGLN3
19   chr3  111572976      111726986  NM_001134437        PHLDB2
21   chr3  111572976      111726986  NM_001272069        ABHD10,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr4   91190000       91617897  NM_001145065    CCSER1
2  chr6   65527496       65702493  NM_001142800       EYS,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   38882636       39379327     NR_045000  ACTR3BP5
1   chr7  110615810      111147260  NM_001099658     LRRN3
2   chr7  110615810      111147260  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   54201724       54354735     NR_120641    LINC01468
2    chr2   25478042       26151886  NM_001256304         DTNB
4    chr2   25478042       26151886  NM_001320892       DNMT3A
7    chr2   25478042       26151886     NM_002254        KIF3C
8    chr2   25478042       26151886     NM_018263        ASXL2
13   chr2   25478042       26151886     NR_031570      MIR1301
14  chr20   14655437       14810481     NM_080676      MACROD2
15  chr20   14693585       16069982  NM_001033087      MACROD2
17  chr20   14693585       16069982     NR_037841  MACROD2-AS1
19  chr20   14693585       16069982     NR_130924    LOC613266
21   chr4   71379754       71705413  NM_001037442        RUFY3
22   chr4   71379754       71705413  NM_001098477        GRSF1
24   chr4   71379754       71705413  NM_001286731         AMTN
29   chr4   71379754       71705413     NM_016519         AMBN
30   chr4   71379754       71705413     NM_020368         UTP3
31   chr4   71379754       71705413     NM_031889         ENAM
32   chr4   71379754       71705413     NM_144646       JCHAIN
33   chr7   18639994       18855618  NM_001204144        HDAC9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21552316       21690049  NM_001077180        METTL9
2   chr16   21552316       21690049     NM_005849         IGSF6
3   chr16   21552316       21690049     NM_144672          OTOA
4   chr16   21552316       21690049     NR_110930  LOC101927814
5   chr16   21462403       21814184  NM_001077180        METTL9
6   chr16   21462403       21814184  NM_001161683          OTOA
8   chr16   21462403       21814184     NM_005849         IGSF6
11  chr16   21462403       21814184     NR_002594      SLC7A5P2
12  chr16   21462403       21814184     NR_003370        RRN3P1
13  chr16   21462403       21814184     NR_027155        SMG1P3
14  chr16   21462403       21814184     NR_049833     MIR3680-2
15  chr16   21462403       21814184     NR_110930  LOC101927814,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  144709083      148236173  NM_001002810       PDE4DIP
3   chr1  144709083      148236173  NM_001012758        NUDT17
4   chr1  144709083      148236173  NM_001039888      ANKRD34A
5   chr1  144709083      148236173  NM_001097612        GPR89A
6   chr1  144709083      148236173  NM_001101663        NBPF11
8   chr1  144709083      148236173  NM_001135789       PPIAL4C
9   chr1  144709083      148236173  NM_001144829          FMO5
10  chr1  144709083      148236173  NM_001164261       PPIAL4D
11  chr1  144709083      148236173  NM_001184795        PEX11B
16  chr1  144709083      148236173  NM_001201325         PDZK1
17  chr1  144709083      148236173  NM_001256336         CHD1L
18  chr1  144709083      148236173  NM_001277444         NBPF9
19  chr1  144709083      148236173  NM_001278141        NBPF12
20  chr1  144709083      148236173  NM_001278267        NBPF20
21  chr1  144709083      148236173  NM_001280799       ANKRD35
22  chr1  144709083      148236173  NM_001302371        NBPF10
23  chr1  144709083      148236173  NM_001303040        ITGA10
24  chr1  144709083      148236173  NM_001303456        POLR3C
25  chr1  144709083      148236173  NM_001313972         TXNIP
28  chr1  144709083      148236173     NM_004326          BCL9
29  chr1  144709083      148236173     NM_004892        SEC22B
30  chr1  144709083      148236173     NM_005105         RBM8A
31  chr1  144709083      148236173     NM_005266          GJA5
32  chr1  144709083      148236173     NM_005267          GJA8
33  chr1  144709083      148236173     NM_005399        PRKAB2
34  chr1  144709083      148236173     NM_006099         PIAS3
37  chr1  144709083      148236173     NM_007053         CD160
38  chr1  144709083      148236173     NM_014455        RNF115
39  chr1  144709083      148236173     NM_016334        GPR89B
40  chr1  144709083      148236173     NM_016361          ACP6
42  chr1  144709083      148236173     NM_032305       POLR3GL
43  chr1  144709083      148236173     NM_145277          HFE2
44  chr1  144709083      148236173     NM_153713         LIX1L
46  chr1  144709083      148236173     NM_203458      NOTCH2NL
47  chr1  144709083      148236173     NR_002305       PDIA3P1
48  chr1  144709083      148236173     NR_002328        GNRHR2
49  chr1  144709083      148236173     NR_024442     LOC728989
50  chr1  144709083      148236173     NR_038423     LINC00624
51  chr1  144709083      148236173     NR_049810       MIR5087
53  chr1  144709083      148236173     NR_102405         NBPF8
55  chr1  144709083      148236173     NR_103466       NBPF13P
58  chr1  144709083      148236173     NR_104086      RNVU1-19
59  chr1  144709083      148236173     NR_104217       NBPF25P
61  chr1  144709083      148236173     NR_106794       MIR6736
62  chr1  144709083      148236173     NR_106967       MIR6077
65  chr1  144709083      148236173     NR_111930  LOC100132057
66  chr1  144709083      148236173     NR_111936       PDZK1P1
68  chr1  144709083      148236173     NR_120331  LOC101927468
69  chr1  144709083      148236173     NR_121645       RNVU1-8
70  chr1  144709083      148236173     NR_125967  LOC101928979
71  chr1  144709083      148236173     NR_135559  LOC100505824,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11    4801092        5003921  NM_001004748    OR51A2
1   chr11    4801092        5003921  NM_001004749    OR51A7
2   chr11    4801092        5003921  NM_001004753    OR51F2
3   chr11    4801092        5003921  NM_001004758    OR51S1
4   chr11    4801092        5003921  NM_001004759    OR51T1
5   chr11    4801092        5003921  NM_001005177    OR52R1
6   chr11    4801092        5003921  NM_001005237    OR51G1
7   chr11    4801092        5003921  NM_001005238    OR51G2
8   chr11    4801092        5003921  NM_001005329    OR51A4
9   chr17   21287483       21756794  NM_001113434  C17orf51
10  chr17   21287483       21756794  NM_001194958    KCNJ18
11  chr17   21287483       21756794     NM_021012    KCNJ12
12  chr20   40605358       40848362     NM_133170     PTPRT
13   chr7    4069928        4179660  NM_001079653      SDK1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   20869286       21094189  NM_001145946   SLCO1C1
2  chr12   20869286       21094189     NM_019844   SLCO1B3
3   chr7   64094574       64215820  NM_001282360    ZNF107
5   chr7   64094574       64215820     NR_106898   MIR6839
6   chr9   41877836       41979881     NR_003670    FGF7P3
7   chr9   41877836       41979881     NR_015363     GLIDR,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr6   45046940       45778335  NM_001024630     RUNX2
1  chr6   45046940       45778335  NM_001261823    SUPT3H
3  chr6   45046940       45778335     NR_030313    MIR586,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr19      81874         227097  NM_001005240     OR4F17
1  chr19      81874         227097     NR_028324  LINC01002
2  chr20   14701622       14826345     NM_080676    MACROD2,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr2  107655592      107797171  NR_049853  MIR548AU,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr1  193334064      193472962  NR_125789  LINC01031,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr1  108429203      108536136     NM_006113        VAV3
1   chr1  108429203      108536136     NR_046653    VAV3-AS1
2   chr1  108429203      108536136     NR_107006     MIR7852
3   chr4   91120048       91358613  NM_001145065      CCSER1
5   chr7    5574837        6116098     NM_000535        PMS2
6   chr7    5574837        6116098  NM_001097622         OCM
7   chr7    5574837        6116098  NM_001099697    RSPH10B2
8   chr7    5574837        6116098  NM_001271700     ANKRD61
10  chr7    5574837        6116098  NM_001326610       AIMP2
12  chr7    5574837        6116098     NM_003088       FSCN1
13  chr7    5574837        6116098     NM_014413     EIF2AK1
14  chr7    5574837        6116098     NM_015622        CCZ1
15  chr7    5574837        6116098     NM_207116      RNF216
16  chr7    5574837        6116098     NR_023382     ZNF815P
17  chr7    5574837        6116098     NR_046834  RNF216-IT1
18  chr7    5574837        6116098     NR_106934     MIR6874
19  chr7   64117188       64246371  NM_001282360      ZNF107
21  chr7   64117188       64246371     NR_106898     MIR6839,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr10   56467778       56755495  NM_001142770             PCDH15
3   chr15   98206573       98417556     NR_024172          LINC00923
4   chr19   33113210       33623908  NM_001105570             NUDT19
5   chr19   33113210       33623908  NM_001110822             TDRD12
6   chr19   33113210       33623908  NM_001300978             FAAP24
7   chr19   33113210       33623908     NM_014270             SLC7A9
8   chr19   33113210       33623908     NM_032139            ANKRD27
9   chr19   33113210       33623908     NM_032816              CEP89
10  chr19   33113210       33623908     NM_033103              RHPN2
11  chr19   33113210       33623908     NM_173479              WDR88
12  chr19   33113210       33623908     NM_207391             RGS9BP
13  chr19   33113210       33623908     NR_135270            GPATCH1
14  chr22   17047638       17209292     NM_014406             CCT8L2
15  chr22   17047638       17209292     NR_001591             TPTEP1
16  chr22   17047638       17209292     NR_040115  ANKRD62P1-PARP4P3
17   chr7   88946801       89389664     NM_181646            ZNF804B
18   chr9   28577242       28756970  NM_001258282             LINGO2
20   chr9   28553933       28733071  NM_001258282             LINGO2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr19   47804885       47919839  NM_001009813      MEIS3
1  chr19   47804885       47919839  NM_001271749      C5AR2
5  chr19   47804885       47919839     NM_001736      C5AR1
6  chr19   47804885       47919839     NM_014681      DHX34
8   chr3     829401        1132142     NR_110118  LINC01266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67949218       68118675  NM_001127384        CTNNA3
2   chr18     804355        1225812  NM_001099733       ADCYAP1
4   chr18     804355        1225812     NM_005433          YES1
5    chr7  123400185      123646718  NM_001174044         SPAM1
8    chr7  123400185      123646718     NM_012269         HYAL4
9    chr7  123400185      123646718     NR_002731        HYALP1
10   chr7  123400185      123646718     NR_125730        RNU6-2
11   chr7  123400185      123646718     NR_133947  LOC105375483, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [], Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   72350871       73672226     NM_173808         NEGR1
1   chr10   81444411       82163568     NM_000429         MAT1A
2   chr10   81444411       82163568  NM_001012973         PLAC9
3   chr10   81444411       82163568  NM_001269053         DYDC1
4   chr10   81444411       82163568  NM_001270041         DYDC2
6   chr10   81444411       82163568  NM_001270367       TMEM254
9   chr10   81444411       82163568  NM_001278407        ANXA11
11  chr10   81444411       82163568  NM_001278495        NUTM2B
13  chr10   81444411       82163568     NM_003019         SFTPD
15  chr10   81444411       82163568     NR_002724         MBL1P
16  chr10   81444411       82163568     NR_027431   TMEM254-AS1
17  chr10   81444411       82163568     NR_027512       BEND3P3
18  chr10   81444411       82163568     NR_029407     LOC642361
19  chr10   81444411       82163568     NR_033857       BMS1P21
20  chr10   81444411       82163568     NR_038464     LINC00857
21  chr10   81444411       82163568     NR_120611    NUTM2B-AS1
24  chr10   81444411       82163568     NR_136612  LOC100130698
26  chr11  132193682      132299022  NM_001012393         OPCML
27  chr11  132193682      132299022  NM_001048209           NTM
31  chr12   85632942       85848938  NM_001079910        LRRIQ1
32  chr12   85632942       85848938     NM_006982          ALX1
33  chr14   81611866       82203095     NM_000369          TSHR
34  chr14   81611866       82203095  NM_001244984         SEL1L
35  chr14   81611866       82203095  NM_001256430         STON2
36  chr14   81611866       82203095  NM_001278940        GTF2A1
40  chr14   81611866       82203095     NR_003021       SNORA79
41  chr14   81611866       82203095     NR_109999  LOC100506700
42  chr14   81611866       82203095     NR_110074     LINC01467
43  chr14   81611866       82203095     NR_135252  LOC101928504
44   chr4  121668269      121789086     NM_018699         PRDM5
45   chr5  104392849      104519916     NR_000039       RAB9BP1
46   chr8  124917045      125158677  NM_001039112        FER1L6
47   chr8  124917045      125158677     NR_040044    FER1L6-AS1
48   chr8  124917045      125158677     NR_103547    FER1L6-AS2,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr12   97926609       98063118  NR_024037          RMST
1  chr12   97926609       98063118  NR_029678      MIR135A2
2   chr4  190515053      190668319  NR_121679     LINC01262
3   chr4  190515053      190668319  NR_135513  LOC105379514,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48449460       48562343  NM_001005512    OR4A47
1   chr5  119907932      120542654  NM_001300783     PRR16,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  144671035      144791968  NM_001277444      NBPF9
1   chr1  144671035      144791968  NM_001278267     NBPF20
2   chr1  144671035      144791968     NR_102405      NBPF8
3   chr4  145123004      146613082  NM_001003688      SMAD1
4   chr4  145123004      146613082  NM_001080531    C4orf51
5   chr4  145123004      146613082  NM_001102653      OTUD4
6   chr4  145123004      146613082  NM_001256706    ANAPC10
9   chr4  145123004      146613082     NM_002940      ABCE1
12  chr4  145123004      146613082     NM_022475       HHIP
13  chr4  145123004      146613082     NM_172250       MMAA
14  chr4  145123004      146613082     NR_037595   HHIP-AS1
15  chr4  145123004      146613082     NR_108077  SMAD1-AS2
16  chr4  145123004      146613082     NR_126371  SMAD1-AS1
17  chr8    6746955        6911041  NM_001302265     DEFA1B
18  chr8    6746955        6911041     NM_001925      DEFA4
19  chr8    6746955        6911041     NM_001926      DEFA6
20  chr8    6746955        6911041     NM_004084      DEFA1
22  chr8    6746955        6911041     NM_005217      DEFA3
23  chr8    6746955        6911041     NR_029386    DEFA10P
24  chr8    6746955        6911041     NR_036686     DEFT1P
26  chr8    6746955        6911041     NR_073407     DEFA8P
27  chr8    6746955        6911041     NR_073408     DEFA9P
28  chr8    6746955        6911041     NR_073421    DEFA11P,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   39087937       39269693     NR_039982  LINC00639
1  chr14   47807505       48024242  NM_001113498      MDGA2
4  chr20   14648021       14779813     NM_080676    MACROD2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   57630357       57901488  NM_001080156   ARHGAP9
2   chr12   57630357       57901488  NM_001160045      GLI1
4   chr12   57630357       57901488  NM_001286256     STAC3
6   chr12   57630357       57901488  NM_001330122    R3HDM2
7   chr12   57630357       57901488     NM_004990      MARS
8   chr12   57630357       57901488     NM_005538     INHBC
10  chr12   57630357       57901488     NM_020142  NDUFA4L2
11  chr12   57630357       57901488     NM_031479     INHBE
13   chr7  110663501      110809866  NM_001099658     LRRN3
14   chr7  110663501      110809866  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   85598590       85758858  NM_001243137      PDE8A
2  chr15   85598590       85758858     NR_049748  LOC642423
3  chr21   28151110       29402942     NM_006988    ADAMTS1
4  chr21   28151110       29402942     NM_007038    ADAMTS5
5  chr21   28151110       29402942     NR_024357  LINC00113
6  chr21   28151110       29402942     NR_027246  LINC00314
7  chr21   28151110       29402942     NR_039916    MIR4759,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   37576758       38919867     NM_001049         SSTR1
1   chr14   37576758       38919867  NM_001171170      SLC25A21
2   chr14   37576758       38919867  NM_001195296        MIPOL1
3   chr14   37576758       38919867  NM_001310135          TTC6
4   chr14   37576758       38919867     NM_004496         FOXA1
5   chr14   37576758       38919867     NM_175060       CLEC14A
6   chr14   37576758       38919867     NR_033240  SLC25A21-AS1
7   chr14   37576758       38919867     NR_135286     LINC00517
8   chr16    6695951        6796224  NM_001308117        RBFOX1
10  chr17   21338106       21548519  NM_001113434      C17orf51
11   chr4   71345264       71489148  NM_001145006          MUC7
13   chr4   71345264       71489148  NM_001286731          AMTN
14   chr4   71345264       71489148     NM_016519          AMBN,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr15   30241080       30361474  NM_001301025        TJP1
1    chr7    5644650        6029639     NM_000535        PMS2
2    chr7    5644650        6029639  NM_001097622         OCM
3    chr7    5644650        6029639  NM_001099697    RSPH10B2
5    chr7    5644650        6029639     NM_003088       FSCN1
6    chr7    5644650        6029639     NM_015622        CCZ1
7    chr7    5644650        6029639     NM_207116      RNF216
8    chr7    5644650        6029639     NR_023382     ZNF815P
9    chr7    5644650        6029639     NR_046834  RNF216-IT1
10   chr7    5644650        6029639     NR_106934     MIR6874,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   27605246       27719864  NM_001034842     PTCHD3
1   chr10   27605246       27719864     NR_138082    ARMC4P1
2   chr13  113028461      113204358  NM_001286278    TUBGCP3
5   chr13  113028461      113204358     NM_145248     SPACA7
6   chr15   30259651       30361417  NM_001301025       TJP1
7    chr2   47020154       47170459  NM_001171506      MCFD2
10   chr2   47020154       47170459  NM_001288951      TTC7A
12   chr2   47020154       47170459     NR_024452  LINC01119
13   chr2   47020154       47170459     NR_034099  LINC01118
14  chr21   23045041       23310485     NR_038872  LINC00317
15  chr21   23045041       23310485     NR_109958  LINC01425,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   88487730       88628746  NM_001127464        ZNF469
1  chr16   88487730       88628746     NM_153813         ZFPM1
2  chr16   88487730       88628746     NR_049821       MIR5189
3   chr4  188284536      188747396     NR_038931     LOC339975
4   chr4  188284536      188747396     NR_110436  LOC100506272
5   chr5   26923237       27126256     NM_016279          CDH9,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   89082017       89214159  NM_001143837      NOX4
5   chr11  102662711      103322839  NM_001080463   DYNC2H1
6   chr11  102662711      103322839  NM_001318739   DCUN1D5
7   chr11  102662711      103322839     NM_002421      MMP1
8   chr11  102662711      103322839     NM_002422      MMP3
9   chr11  102662711      103322839     NM_002426     MMP12
10  chr11  102662711      103322839     NM_002427     MMP13
11  chr11  102662711      103322839     NR_038390    WTAPP1
12  chr19   57943553       58156198  NM_001023561    ZNF749
13  chr19   57943553       58156198  NM_001098491    ZNF419
14  chr19   57943553       58156198  NM_001144068    ZNF772
15  chr19   57943553       58156198  NM_001199295    ZNF549
16  chr19   57943553       58156198  NM_001277090    ZNF550
17  chr19   57943553       58156198  NM_001304334    ZNF773
19  chr19   57943553       58156198  NM_001321145      ZIK1
20  chr19   57943553       58156198  NM_001321981    ZNF530
21  chr19   57943553       58156198  NM_001322306    ZNF211
22  chr19   57943553       58156198     NM_003435    ZNF134
23  chr19   57943553       58156198     NM_017879    ZNF416
24  chr19   57943553       58156198     NM_020633     VN1R1
27   chr6  162875369      163041745     NM_013988     PARK2
28   chr7  133195376      133298562     NM_021807     EXOC4,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   29553798       29748708  NM_001030288        SPN
1  chr16   29553798       29748708  NM_001318249       QPRT
3  chr16   29553798       29748708     NR_049833  MIR3680-2
4  chr16   29553798       29748708     NR_135305     SMG1P2
6   chr3    4008527        4409890  NM_001164675      SUMF1
7   chr3    4008527        4409890  NM_001243723     SETMAR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68098805       68227863  NM_001127384        CTNNA3
2   chr10  110007151      111677797  NM_001324128       XPNPEP1
4   chr13   63159797       63471110     NR_047029     LINC00448
7   chr13   63366050       64769822     NR_002171      OR7E156P
8   chr13   63366050       64769822     NR_047011     LINC00395
9   chr13   63366050       64769822     NR_047029     LINC00448
12  chr13   63366050       64769822     NR_126409     LINC00376
13  chr13   63366050       64769822     NR_130763  LOC102723968
14  chr14   47905224       48050102  NM_001113498         MDGA2
15  chr16    8640642        9161203     NM_000303          PMM2
16  chr16    8640642        9161203     NM_000663          ABAT
17  chr16    8640642        9161203  NM_001042476       CARHSP1
23  chr16    8640642        9161203  NM_001286457          USP7
27  chr16    8640642        9161203     NM_015421       TMEM186
29  chr16    8640642        9161203     NM_024109       METTL22
31  chr16   78779572       78923610     NM_016373          WWOX
32  chr21   13404655       14936788     NR_026916    ANKRD30BP2
33  chr21   13404655       14936788     NR_036164     MIR3156-3
34  chr21   13404655       14936788     NR_110544  LOC102724188,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   84137139       84657700  NM_001142699      DLG2
2   chr4   28439477       29109966     NR_036237   MIR4275,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr15   78346656       78701633  NM_001101404        SH2D7
1   chr15   78346656       78701633  NM_001130182       DNAJA4
3   chr15   78346656       78701633  NM_001199377       ACSBG1
4   chr15   78346656       78701633  NM_001301224         CIB2
5   chr15   78346656       78701633  NM_001303247        WDR61
6   chr15   78346656       78701633     NM_004378       CRABP1
7   chr15   78346656       78701633     NM_005530        IDH3A
8   chr15   78346656       78701633     NM_015079      TBC1D2B
10  chr20   14674121       15215166  NM_001033087      MACROD2
12  chr20   14674121       15215166     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12849679       13001053  NM_001009611       PRAMEF4
1    chr1   12849679       13001053  NM_001010889       PRAMEF6
2    chr1   12849679       13001053  NM_001010890       PRAMEF9
3    chr1   12849679       13001053  NM_001012276       PRAMEF8
4    chr1   12849679       13001053  NM_001013631      HNRNPCL1
5    chr1   12849679       13001053  NM_001146181      HNRNPCL3
6    chr1   12849679       13001053  NM_001146344      PRAMEF11
7    chr1   12849679       13001053  NM_001294139       PRAMEF1
8    chr1   12849679       13001053  NM_001302551      HNRNPCL4
10   chr1   12849679       13001053     NM_023014       PRAMEF2
11  chr18   24615559       24768870  NM_001256316         CHST9
12   chr4   69160492       69283834  NM_001031732        YTHDC1
13   chr5   98740984       99133290     NR_110562  CTD-2151A2.1
14   chr7   75780036       75916371  NM_001110199         SRRM3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   13022351       13907188  NM_001010847     LRRC38
1    chr1   13022351       13907188  NM_001010889    PRAMEF6
2    chr1   13022351       13907188  NM_001012276    PRAMEF8
4    chr1   13022351       13907188  NM_001013407    PRAMEF5
6    chr1   13022351       13907188  NM_001024661   PRAMEF14
8    chr1   13022351       13907188  NM_001039361   PRAMEF10
10   chr1   13022351       13907188  NM_001098376   PRAMEF15
12   chr1   13022351       13907188  NM_001099790   PRAMEF19
14   chr1   13022351       13907188  NM_001099850   PRAMEF18
16   chr1   13022351       13907188  NM_001099851   PRAMEF17
18   chr1   13022351       13907188  NM_001099852   PRAMEF20
20   chr1   13022351       13907188  NM_001100631   PRAMEF22
22   chr1   13022351       13907188  NM_001136561   HNRNPCL2
23   chr1   13022351       13907188  NM_001291381  PRAMEF33P
25   chr1   13022351       13907188  NM_001300891   PRAMEF27
28   chr1   13022351       13907188  NM_001306072   PRAMEF26
29   chr1   13022351       13907188  NM_001310134   PRAMEF25
30   chr1   13022351       13907188     NR_111945  PRAMEF36P
32  chr10   55704060       55849581  NM_001142770     PCDH15
35   chr7   16479102       16586846  NM_001195280     LRRC72
36   chr7   16479102       16586846     NM_015464    SOSTDC1
37   chr7   69281346       69384271  NM_001127231      AUTS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27153105       27321009  NM_001080406      C12orf71
1   chr12   27153105       27321009  NM_001271811         MED21
2   chr12   27153105       27321009     NM_016551        TM7SF3
3   chr12   72587059       72690219     NM_013381         TRHDE
4   chr12   72587059       72690219     NR_026836     TRHDE-AS1
6   chr13   54388201       54561481     NR_047488     LINC00558
7   chr18   24783459       24958097     NR_134589  LOC105372038
8    chr3   50282576       50419085  NM_001166425         GNAI2
9    chr3   50282576       50419085  NM_001200016          NAT6
11   chr3   50282576       50419085  NM_001200029         HYAL3
12   chr3   50282576       50419085  NM_001206957        RASSF1
16   chr3   50282576       50419085  NM_001290060        SEMA3B
19   chr3   50282576       50419085  NM_001291101      CACNA2D2
20   chr3   50282576       50419085  NM_001291284      CYB561D2
21   chr3   50282576       50419085  NM_001308379       ZMYND10
23   chr3   50282576       50419085     NM_003773         HYAL2
26   chr3   50282576       50419085     NM_006545         NPRL2
27   chr3   50282576       50419085     NM_006764         IFRD2
28   chr3   50282576       50419085     NM_007024       TMEM115
29   chr3   50282576       50419085     NM_007275         TUSC2
30   chr3   50282576       50419085     NM_153215        LSMEM2
31   chr3   50282576       50419085     NM_153281         HYAL1
35   chr3   50282576       50419085     NR_106932       MIR6872
36   chr3   50282576       50419085     NR_109831    RASSF1-AS1
37   chr3   50282576       50419085     NR_110702    SEMA3B-AS1
40   chr5  106802832      106941788     NM_001962         EFNA5
41   chr7   21417627       21564918  NM_001326542           SP4
42   chr7   21417627       21564918     NR_031594       MIR1183
44   chr8    7904217        8066515     NR_031689      MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108372461      108513574     NM_006113          VAV3
1    chr1  108372461      108513574     NR_046653      VAV3-AS1
2    chr1  108372461      108513574     NR_107006       MIR7852
3   chr20   14630731       14733312     NM_080676       MACROD2
4    chr5     138850         523839  NM_001080478       LRRC14B
5    chr5     138850         523839  NM_001242412          AHRR
6    chr5     138850         523839  NM_001284351        SLC9A3
7    chr5     138850         523839     NM_004168          SDHA
8    chr5     138850         523839     NM_007277         EXOC3
9    chr5     138850         523839     NM_013232         PDCD6
10   chr5     138850         523839     NM_052909      PLEKHG4B
11   chr5     138850         523839     NM_145265       CCDC127
12   chr5     138850         523839     NR_024158        PP7080
14   chr5     138850         523839     NR_104613         HRAT5
15   chr5     138850         523839     NR_125375  LOC100288152
16   chr5     138850         523839     NR_126522     EXOC3-AS1
17   chr9   74703098       75337252  NM_001102420        ZFAND5
18   chr9   74703098       75337252  NM_001242505           GDA
21   chr9   74703098       75337252     NM_138691          TMC1
22   chr9   74703098       75337252     NR_110952     LINC01504,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   82413219       82523247  NM_001297704      ADGRL2
2   chr14   38168117       38381682  NM_001310135        TTC6
3   chr14   38168117       38381682     NR_135286   LINC00517
4   chr15   65478855       65803405     NM_003613        CILP
5   chr15   65478855       65803405     NM_004884      IGDCC3
6   chr15   65478855       65803405     NM_017851      PARP16
7   chr15   65478855       65803405     NM_020962      IGDCC4
8   chr15   65478855       65803405     NR_135485        DPP8
10   chr3   50273439       50386629  NM_001166425       GNAI2
11   chr3   50273439       50386629  NM_001200016        NAT6
13   chr3   50273439       50386629  NM_001200029       HYAL3
14   chr3   50273439       50386629  NM_001206957      RASSF1
18   chr3   50273439       50386629  NM_001290060      SEMA3B
21   chr3   50273439       50386629  NM_001308379     ZMYND10
23   chr3   50273439       50386629     NM_003773       HYAL2
25   chr3   50273439       50386629     NM_006545       NPRL2
26   chr3   50273439       50386629     NM_006764       IFRD2
27   chr3   50273439       50386629     NM_007275       TUSC2
28   chr3   50273439       50386629     NM_153215      LSMEM2
29   chr3   50273439       50386629     NM_153281       HYAL1
33   chr3   50273439       50386629     NR_106932     MIR6872
34   chr3   50273439       50386629     NR_109831  RASSF1-AS1
35   chr3   50273439       50386629     NR_110702  SEMA3B-AS1
36   chr3  189565073      189676583  NM_001114979        TP63
38   chr3  189565073      189676583  NM_001134418        P3H2
43   chr4   73006897       73126842     NM_004885      NPFFR2
45   chr4  165938163      166342194  NM_001100389     TMEM192
46   chr4  165938163      166342194  NM_001161522       KLHL2
47   chr4  165938163      166342194     NM_001873         CPE
48   chr4  165938163      166342194     NM_006745       MSMO1
50   chr4  165938163      166342194     NM_152620      TRIM60
51   chr4  165938163      166342194     NR_026575        GK3P
52   chr4  165938163      166342194     NR_030304      MIR578
53   chr6   12885582       13203847  NM_001322308     PHACTR1
59   chr7    4114984        4737441  NM_001037165       FOXK1
60   chr7    4114984        4737441  NM_001079653        SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143089954      143299310     NR_110761  LOC102723769
1   chr16   21498645       21756793  NM_001077180        METTL9
2   chr16   21498645       21756793  NM_001161683          OTOA
4   chr16   21498645       21756793     NM_005849         IGSF6
7   chr16   21498645       21756793     NR_002594      SLC7A5P2
8   chr16   21498645       21756793     NR_027155        SMG1P3
9   chr16   21498645       21756793     NR_049833     MIR3680-2
10  chr16   21498645       21756793     NR_110930  LOC101927814
11   chr9   67185532       67303605     NR_002817        AQP7P1
12   chr9   67185532       67303605     NR_136300  LOC102724580
13   chr9  137596181      137724860     NM_000093        COL5A1
14   chr9  137596181      137724860     NR_103451  LOC101448202,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   30174854       30502485     NM_000510         FSHB
1   chr11   30174854       30502485  NM_001145399       MPPED2
3   chr11   30174854       30502485     NM_152316      ARL14EP
4   chr15   77874457       78010402  NM_001301186       LINGO1
14  chr15   77874457       78010402     NR_045123   LINGO1-AS1
15  chr15   77874457       78010402     NR_120361   LINGO1-AS2
16  chr19    1866706        2022715  NM_001130111      ABHD17A
17  chr19    1866706        2022715     NM_001319      CSNK1G2
18  chr19    1866706        2022715  NM_001329539       SCAMP4
19  chr19    1866706        2022715     NM_017797        BTBD2
20  chr19    1866706        2022715     NM_138422        ADAT3
21  chr19    1866706        2022715     NR_033400  CSNK1G2-AS1
22   chr4   28420552       28946281     NR_036237      MIR4275
23   chr8    2060136        2231901     NM_003970        MYOM2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12  130289183      130471729     NM_133448  TMEM132D
1  chr14   80054710       80300002  NM_001272020     NRXN3
4   chr7  110608462      110708760  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   41309151       41538813  NM_001145353          ELF1
1   chr13   41309151       41538813     NM_005830        MRPS31
2   chr13   41309151       41538813     NM_014252      SLC25A15
4   chr13   41309151       41538813     NR_003365       SUGT1P3
5   chr13   41309151       41538813     NR_030352        MIR621
6   chr13   41309151       41538813     NR_038259       TPTE2P5
7   chr15   36208174       36426580     NR_039735       MIR4510
8   chr17     172225         353335  NM_001013672      C17orf97
9   chr17     172225         353335  NM_001190411        RPH3AL
10  chr17     172225         353335     NM_182705         RFLNB
11  chr17     172225         353335     NR_040011  LOC100506388
12  chr17     172225         353335     NR_136407  LOC105371430
13   chr5  125621585      125760513  NM_001146319        GRAMD3
15   chr7   64215441       64368314  NM_001160183        ZNF138
16   chr7   64215441       64368314     NM_021148        ZNF273
18   chr7  124943005      125089520     NR_110188  LOC101928283,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   85481036       85595274  NM_001079910    LRRIQ1
1  chr13   41342200       41451927     NM_005830    MRPS31
2  chr13   41342200       41451927     NM_014252  SLC25A15
3  chr13   41342200       41451927     NR_030352    MIR621
4  chr13   41342200       41451927     NR_038259   TPTE2P5
5   chr8   16608937       17039829     NM_016353    ZDHHC2
6   chr8   16608937       17039829     NM_019851     FGF20
7   chr8   16608937       17039829     NM_181723     MICU3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr20   41082392       41199424     NM_133170     PTPRT
1    chr7  102132378      102558385  NM_001031618    SPDYE2
3    chr7  102132378      102558385  NM_001031692    LRRC17
4    chr7  102132378      102558385  NM_001097615   POLR2J3
5    chr7  102132378      102558385  NM_001114403    UPK3BL
6    chr7  102132378      102558385  NM_001277335    RASA4B
8    chr7  102132378      102558385  NM_001287150    FBXL13
9    chr7  102132378      102558385     NM_006989     RASA4
10   chr7  102132378      102558385     NM_032959   POLR2J2
12   chr7  102132378      102558385     NR_026879   FAM185A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12801768       13115395  NM_001009611       PRAMEF4
1    chr1   12801768       13115395  NM_001010889       PRAMEF6
2    chr1   12801768       13115395  NM_001010890       PRAMEF9
3    chr1   12801768       13115395  NM_001012276       PRAMEF8
4    chr1   12801768       13115395  NM_001013407       PRAMEF5
5    chr1   12801768       13115395  NM_001013631      HNRNPCL1
6    chr1   12801768       13115395  NM_001080830      PRAMEF12
7    chr1   12801768       13115395  NM_001099850      PRAMEF18
8    chr1   12801768       13115395  NM_001100631      PRAMEF22
9    chr1   12801768       13115395  NM_001146181      HNRNPCL3
10   chr1   12801768       13115395  NM_001146344      PRAMEF11
11   chr1   12801768       13115395  NM_001294139       PRAMEF1
12   chr1   12801768       13115395  NM_001302551      HNRNPCL4
13   chr1   12801768       13115395  NM_001306072      PRAMEF26
14   chr1   12801768       13115395  NM_001310134      PRAMEF25
16   chr1   12801768       13115395     NM_023014       PRAMEF2
17   chr1   12801768       13115395     NM_152290      C1orf158
18  chr12   85658790       85788449     NM_006982          ALX1
19  chr22   20074369       20223950  NM_001190326         DGCR8
20  chr22   20074369       20223950  NM_001243537       CCDC188
21  chr22   20074369       20223950  NM_001278639        RANBP1
24  chr22   20074369       20223950     NM_013373        ZDHHC8
25  chr22   20074369       20223950     NM_022727        TRMT2A
26  chr22   20074369       20223950     NR_026919     LINC00896
27  chr22   20074369       20223950     NR_038460     LOC284865
28  chr22   20074369       20223950     NR_106874       MIR6816
29   chr5     162357         557805  NM_001080478       LRRC14B
30   chr5     162357         557805  NM_001242412          AHRR
31   chr5     162357         557805  NM_001284351        SLC9A3
32   chr5     162357         557805     NM_004168          SDHA
33   chr5     162357         557805     NM_007277         EXOC3
34   chr5     162357         557805     NM_013232         PDCD6
35   chr5     162357         557805     NM_052909      PLEKHG4B
36   chr5     162357         557805     NM_145265       CCDC127
37   chr5     162357         557805     NR_024158        PP7080
38   chr5     162357         557805     NR_039661       MIR4456
40   chr5     162357         557805     NR_104613         HRAT5
41   chr5     162357         557805     NR_125375  LOC100288152
42   chr5     162357         557805     NR_126522     EXOC3-AS1
43   chr7  110550019      110661389  NM_001244606        IMMP2L,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr3  162865852      163270070  NR_033945  LINC01192,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   69485391       69839968     NR_125752     LINC00383
1   chr19   21678149       21817195  NM_001001415        ZNF429
2   chr19   21678149       21817195     NR_037194     LINC00664
3    chr7   16729618       16839350  NM_001159767          BZW2
4    chr7   16729618       16839350     NM_006408          AGR2
5    chr7   16729618       16839350     NM_014399       TSPAN13
6    chr7   62959133       64547738  NM_001007253        ERV3-1
7    chr7   62959133       64547738  NM_001130022        ZNF680
8    chr7   62959133       64547738  NM_001159522        ZNF727
9    chr7   62959133       64547738  NM_001159524        ZNF735
10   chr7   62959133       64547738  NM_001160183        ZNF138
11   chr7   62959133       64547738  NM_001170905        ZNF736
12   chr7   62959133       64547738  NM_001282360        ZNF107
14   chr7   62959133       64547738     NM_015852        ZNF117
15   chr7   62959133       64547738     NM_021148        ZNF273
16   chr7   62959133       64547738     NM_153363        ZNF679
18   chr7   62959133       64547738     NR_029404       YWHAEP1
19   chr7   62959133       64547738     NR_033245     LOC641746
20   chr7   62959133       64547738     NR_033416        CCT6P3
21   chr7   62959133       64547738     NR_036246     MIR4283-1
22   chr7   62959133       64547738     NR_039987     LINC01005
24   chr7   62959133       64547738     NR_077227  LOC100128885
26   chr7   62959133       64547738     NR_106898       MIR6839
27   chr9     473564         952147  NM_001256876         KANK1
29   chr9     473564         952147     NM_021951         DMRT1
31   chr9   11596001       12779816     NM_000550         TYRP1
32   chr9   11596001       12779816     NM_203403       LURAP1L
33   chr9   11596001       12779816     NR_125775   LURAP1L-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr2  109835252      109938438  NM_001099289     SH3RF3
1    chr2  109835252      109938438     NR_036224    MIR4266
2   chr21   30114052       31422011     NM_000830      GRIK1
3   chr21   30114052       31422011     NM_001186      BACH1
4   chr21   30114052       31422011  NM_001286619   MAP3K7CL
10  chr21   30114052       31422011  NM_001320724     RWDD2B
11  chr21   30114052       31422011  NM_001320766       LTN1
12  chr21   30114052       31422011     NM_006447      USP16
13  chr21   30114052       31422011     NM_006585       CCT8
14  chr21   30114052       31422011     NM_013240     N6AMT1
20  chr21   30114052       31422011     NR_027021  GRIK1-AS1
21  chr21   30114052       31422011     NR_027072  LINC00189
23  chr21   30114052       31422011     NR_033368  GRIK1-AS2
24  chr21   30114052       31422011     NR_046564  BACH1-IT2
26   chr5   82402008       82600662  NM_001318012      XRCC4
28   chr9   20802940       21067210  NM_001010915      HACD4
30   chr9   20802940       21067210     NM_017794      FOCAD,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1   12747377       12875558  NM_001080830  PRAMEF12
1  chr1   12747377       12875558  NM_001103170   AADACL3
2  chr1   12747377       12875558  NM_001294139   PRAMEF1
4  chr1   12747377       12875558     NM_152290  C1orf158,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr4  108623778      109609357     NM_000995         RPL34
1   chr4  108623778      109609357  NM_001136258         SGMS2
2   chr4  108623778      109609357  NM_001166119          LEF1
3   chr4  108623778      109609357  NM_001184705          HADH
4   chr4  108623778      109609357  NM_001267817          OSTC
9   chr4  108623778      109609357     NM_005443        PAPSS1
13  chr4  108623778      109609357     NM_183075        CYP2U1
14  chr4  108623778      109609357     NR_026968     RPL34-AS1
15  chr4  108623778      109609357     NR_029373      LEF1-AS1
17  chr4  108623778      109609357     NR_125929  LOC101929595
18  chr4  108623778      109609357     NR_134679  LOC101929621
19  chr7  108439678      108638032  NM_001024607       C7orf66
20  chr9   30260170       30392702     NR_046204     LINC01242,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1  112359094      112530307     NM_172198      KCND3
1  chr1  112359094      112530307     NR_046619  KCND3-AS1
2  chr1  112359094      112530307     NR_046783  KCND3-IT1
3  chr5  120020964      120177558  NM_001300783      PRR16,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   46963572       47128976  NM_001164213      LRCH1
1  chr13   46963572       47128976  NM_001286761     RUBCNL
3  chr13   46963572       47128976     NR_120426  LINC01198
4   chr9   41592736       41741258     NR_003528    ZNF658B,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   52980556       53081928     NM_004498       ONECUT1
2  chr15   59958841       60262276  NM_001320674         BNIP2
4   chr7      85069         226110     NM_020223        FAM20C
5   chr7      85069         226110     NR_108065  LOC100507642
6   chr7      85069         226110     NR_134324  LOC105375115
7   chr7      85069         226110     NR_134325  LOC102723672,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   26962094       27398591     NM_002515         NOVA1
2   chr14   26962094       27398591     NR_036193       MIR4307
3   chr14   26962094       27398591     NR_110033  LOC101927062
4   chr14   26962094       27398591     NR_110041     MIR4307HG
5   chr14   26962094       27398591     NR_110556  LOC102724890
6   chr15   28625440       28764326     NR_033351       GOLGA8F
7   chr15   28625440       28764326     NR_033353       GOLGA8G
8   chr15   28625440       28764326     NR_039734     MIR4509-3
10  chr22   19856774       19957093     NM_000754          COMT
13  chr22   19856774       19957093  NM_001282512        TXNRD2
16  chr22   19856774       19957093     NR_039918       MIR4761
17   chr4   69157246       69303810  NM_001031732        YTHDC1
18   chr7    5562000        5675299     NM_001101          ACTB
19   chr7    5562000        5675299     NM_003088         FSCN1
20   chr7    5562000        5675299     NM_207116        RNF216
21   chr7    5562000        5675299     NR_126168     LOC221946,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   30273997       30375763  NM_001282472   GOLGA8J
1   chr16   21676115       22486396  NM_001161683      OTOA
2   chr16   21676115       22486396  NM_001164579  C16orf52
3   chr16   21676115       22486396  NM_001258033    POLR3E
4   chr16   21676115       22486396  NM_001310148    NPIPB4
5   chr16   21676115       22486396     NM_001802      CDR2
6   chr16   21676115       22486396     NM_003366    UQCRC2
7   chr16   21676115       22486396     NM_013302     EEF2K
10  chr16   21676115       22486396     NM_173615     VWA3A
11  chr16   21676115       22486396     NM_173806     PDZD9
12  chr16   21676115       22486396     NR_003370    RRN3P1
13  chr16   21676115       22486396     NR_027154    SMG1P1
14  chr16   21676115       22486396     NR_027460    RRN3P3
15  chr16   21676115       22486396     NR_136333   MFSD13B
16  chr16   68596977       68732741  NM_001305204     ZFP90
18  chr16   68596977       68732741  NM_001317195      CDH3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67301499       67449216     NM_000695   ALDH3B2
1   chr11   67301499       67449216     NM_000852     GSTP1
3   chr11   67301499       67449216  NM_001166102    NDUFV1
4   chr11   67301499       67449216  NM_001243750     NUDT8
5   chr11   67301499       67449216     NM_005995     TBX10
6   chr11   67301499       67449216     NM_080658      ACY3
8   chr11   67301499       67449216     NR_033791    DOC2GP
9   chr11   67301499       67449216     NR_130935  C11orf72
10   chr7  110598464      110983453  NM_001099658     LRRN3
11   chr7  110598464      110983453  NM_001244606    IMMP2L
13   chr9   41866697       42011257     NR_003670    FGF7P3
14   chr9   41866697       42011257     NR_015363     GLIDR,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr6   65508882       65910245  NM_001142800       EYS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20714249       21058703  NM_001145004      GOLGA6L6
1   chr15   20714249       21058703  NM_001277303        POTEB2
2   chr15   20714249       21058703     NM_207355        POTEB3
3   chr15   20714249       21058703     NR_027411      GOLGA8CP
4   chr15   20714249       21058703     NR_027992        NBEAP1
5   chr15   20714249       21058703     NR_036062     MIR3118-2
7    chr4  108616479      108778133  NM_001136258         SGMS2
8    chr4  108616479      108778133     NM_005443        PAPSS1
9    chr7   16500242       17904014  NM_001159767          BZW2
10   chr7   16500242       17904014  NM_001195280        LRRC72
11   chr7   16500242       17904014     NM_001621           AHR
12   chr7   16500242       17904014     NM_006408          AGR2
13   chr7   16500242       17904014     NM_014399       TSPAN13
14   chr7   16500242       17904014     NM_015132         SNX13
15   chr7   16500242       17904014     NM_015464       SOSTDC1
16   chr7   16500242       17904014     NM_020319        ANKMY2
17   chr7   16500242       17904014     NM_176813          AGR3
18   chr7   16500242       17904014     NR_110013  LOC101927630
19   chr7   16500242       17904014     NR_110014      KCCAT333,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  108438697      109152002  NM_001010883       FAM102B
1   chr1  108438697      109152002  NM_001143988         NBPF6
2   chr1  108438697      109152002  NM_001143989         NBPF4
3   chr1  108438697      109152002     NM_006113          VAV3
4   chr1  108438697      109152002     NM_013386      SLC25A24
6   chr1  108438697      109152002     NR_046653      VAV3-AS1
7   chr1  108438697      109152002     NR_107006       MIR7852
8   chr2   97391340       98802536     NM_001079         ZAP70
9   chr2   97391340       98802536  NM_001122646       FAM178B
10  chr2   97391340       98802536  NM_001164315       ANKRD36
12  chr2   97391340       98802536  NM_001320849        FAHD2B
13  chr2   97391340       98802536  NM_001322354        LMAN2L
14  chr2   97391340       98802536  NM_001345864         VWA3B
15  chr2   97391340       98802536     NM_001862         COX5B
16  chr2   97391340       98802536     NM_005735        ACTR1B
17  chr2   97391340       98802536     NM_015348       TMEM131
18  chr2   97391340       98802536     NM_016466       ANKRD39
20  chr2   97391340       98802536     NM_017623         CNNM3
21  chr2   97391340       98802536     NM_017789        SEMA4C
22  chr2   97391340       98802536     NM_020184         CNNM4
23  chr2   97391340       98802536     NM_025190      ANKRD36B
26  chr2   97391340       98802536     NM_144994       ANKRD23
29  chr2   97391340       98802536     NR_036074       MIR3127
30  chr2   97391340       98802536     NR_038386     LINC01125
31  chr2   97391340       98802536     NR_103732  LOC100506076
35  chr2   97391340       98802536     NR_110209  LOC101927053
36  chr2   97391340       98802536     NR_130704  LOC100506123
39  chr6   65494046       65596248  NM_001142800           EYS,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0   chr1  108379168      108664301  NM_006113      VAV3
1   chr1  108379168      108664301  NR_046653  VAV3-AS1
2   chr1  108379168      108664301  NR_107006   MIR7852
3   chr1  152449472      152665605  NM_014357     LCE2B
4   chr1  152449472      152665605  NM_019060     CRCT1
5   chr1  152449472      152665605  NM_032563     LCE3D
6   chr1  152449472      152665605  NM_178429     LCE2C
7   chr1  152449472      152665605  NM_178430     LCE2D
8   chr1  152449472      152665605  NM_178431     LCE3A
9   chr1  152449472      152665605  NM_178433     LCE3B
10  chr1  152449472      152665605  NM_178434     LCE3C
11  chr1  152449472      152665605  NM_178435     LCE3E
12  chr1  152449472      152665605  NM_178438     LCE5A,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  108427788      108585059     NM_006113      VAV3
1   chr1  108427788      108585059     NR_046653  VAV3-AS1
2   chr1  108427788      108585059     NR_107006   MIR7852
3   chr4  169220899      169419066  NM_001012967    DDX60L
4   chr4  169220899      169419066  NM_001166108     PALLD
6   chr4  169220899      169419066     NM_017631     DDX60
7   chr5  154178948      154417634  NM_001014990    MRPL22
8   chr5  154178948      154417634  NM_001099293     KIF4B
9   chr5  154178948      154417634  NM_001301074     CNOT8
12  chr5  154178948      154417634     NM_015315     LARP1
13  chr5  154178948      154417634     NM_015465    GEMIN5
14  chr5  154178948      154417634     NM_032385    FAXDC2
15  chr5  154178948      154417634     NR_039667   MIR378H
16  chr9   28517327       28658280  NM_001258282    LINGO2,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr1   97441365       97578389  NM_000110      DPYD
1  chr1   97441365       97578389  NR_046590  DPYD-AS1
2  chr7  109515327      109688431  NR_003024   EIF3IP1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr10   67679554       68024161  NM_001127384         CTNNA3
2   chr19    9364757        9752937  NM_001172650  ZNF559-ZNF177
3   chr19    9364757        9752937  NM_001172651         ZNF177
4   chr19    9364757        9752937  NM_001202406         ZNF559
7   chr19    9364757        9752937  NM_001271314         ZNF266
8   chr19    9364757        9752937  NM_001300883         ZNF426
9   chr19    9364757        9752937  NM_001308269         ZNF121
10  chr19    9364757        9752937  NM_001330365         ZNF561
13  chr19    9364757        9752937     NM_152476         ZNF560
14  chr19    9364757        9752937     NM_198535         ZNF699
15  chr19    9364757        9752937     NR_122038     ZNF561-AS1
16  chr19    9364757        9752937     NR_134920   LOC101928238
17   chr4  169222145      169363186  NM_001012967         DDX60L
19   chr4  169222145      169363186     NM_017631          DDX60
20   chr8   57840501       57951774     NM_017813         IMPAD1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12   71583450       72021508  NM_001277227          LGR5
1  chr12   71583450       72021508     NM_144982        ZFC3H1
2   chr2  130556750      130760948     NM_032144         RAB6C
3   chr2  130556750      130760948     NR_026740     LOC389033
4   chr2  130556750      130760948     NR_036537     RAB6C-AS1
5   chr2  130556750      130760948     NR_110285  LOC101927924
6   chr5  152207304      152412310     NR_109877     LINC01470,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67632744       67762751  NM_001127384     CTNNA3
2   chr12   81004093       81651003  NM_001145026      PTPRQ
3   chr12   81004093       81651003  NM_001324423      LIN7A
4   chr12   81004093       81651003  NM_001330243      ACSS3
5   chr12   81004093       81651003     NM_002469       MYF6
6   chr12   81004093       81651003     NM_005593       MYF5
7   chr12   81004093       81651003     NR_030348     MIR617
8   chr12   81004093       81651003     NR_030349     MIR618
9   chr12   81004093       81651003     NR_039848    MIR4699
10  chr12   81004093       81651003     NR_120468  LINC01490
11   chr2   51673219       51782951     NR_135237  LOC730100
12   chr3   60230518       60656525  NM_001320899       FHIT
13   chr3   60230518       60656525     NR_128708   MIR548BB
14   chr9   38926471       39238278     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   63512501       63706832  NM_001039469        MARK2
1   chr11   63512501       63706832  NM_001144936     C11orf95
2   chr11   63512501       63706832  NM_001265591         RTN3
3   chr11   63512501       63706832  NM_001300800        NAA40
6   chr11   63512501       63706832     NM_138471     C11orf84
7   chr11   63512501       63706832     NM_173587        RCOR2
8   chr16    6383746        6557991  NM_001308117       RBFOX1
10  chr20   14734680       15128626     NM_080676      MACROD2
11  chr20   14734680       15128626     NR_037841  MACROD2-AS1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14618373       15854430  NM_001033087      MACROD2
2  chr20   14618373       15854430     NR_037841  MACROD2-AS1
4  chr20   14802673       14915028     NM_080676      MACROD2
5  chr20   14802673       14915028     NR_037841  MACROD2-AS1
7   chr6  155452943      155565403  NM_001010927        TIAM2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67984504       68262227  NM_001127384     CTNNA3
2   chr13   31444860       31743470  NM_001286503      HSPH1
4   chr13   31444860       31743470     NM_032849      MEDAG
5   chr13   31444860       31743470     NM_152325      TEX26
6   chr13   31444860       31743470     NR_038287  TEX26-AS1
8   chr13   31444860       31743470     NR_103813  LINC00545
9    chr2   50747689       50866137  NM_001330082      NRXN1
10  chr20   21978220       23013171     NM_021784      FOXA2
12  chr20   21978220       23013171     NR_001558  LINC00261
13  chr20   21978220       23013171     NR_027089  LOC284788
15  chr20   21978220       23013171     NR_038394  LINC01432
16  chr20   21978220       23013171     NR_109883  LINC01384
17  chr20   21978220       23013171     NR_110615  LINC01427
18   chr4    9003564        9709278  NM_001040448    DEFB131
19   chr4    9003564        9709278  NM_001242326   USP17L25
27   chr4    9003564        9709278  NM_001256852   USP17L10
28   chr4    9003564        9709278  NM_001256853   USP17L12
30   chr4    9003564        9709278  NM_001256854   USP17L11
33   chr4    9003564        9709278  NM_001256855   USP17L13
34   chr4    9003564        9709278  NM_001256857   USP17L17
35   chr4    9003564        9709278  NM_001256860   USP17L19
36   chr4    9003564        9709278  NM_001256861   USP17L20
37   chr4    9003564        9709278  NM_001256894   USP17L15
38   chr4    9003564        9709278     NR_027279   USP17L6P
39   chr4    9003564        9709278     NR_031688   MIR548I2
40   chr4    9003564        9709278     NR_046416   USP17L9P
41   chr6   12798256       12992587  NM_001322308    PHACTR1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63093216       63687620     NR_047029     LINC00448
3   chr16   69969399       71197741  NM_001136214       CLEC18A
4   chr16   69969399       71197741  NM_001172772          IL34
5   chr16   69969399       71197741  NM_001195139          COG4
6   chr16   69969399       71197741  NM_001198542         HYDIN
7   chr16   69969399       71197741  NM_001257172        DDX19B
10  chr16   69969399       71197741  NM_001270453          WWP2
14  chr16   69969399       71197741  NM_001320525        DDX19A
15  chr16   69969399       71197741     NM_001605          AARS
16  chr16   69969399       71197741     NM_006927       ST3GAL2
18  chr16   69969399       71197741     NM_012426         SF3B3
20  chr16   69969399       71197741     NM_017990          PDPR
21  chr16   69969399       71197741     NM_018052         VAC14
22  chr16   69969399       71197741     NM_058219        EXOSC6
23  chr16   69969399       71197741     NM_138383        MTSS1L
24  chr16   69969399       71197741     NM_145059           FUK
26  chr16   69969399       71197741     NM_173619       CLEC18C
29  chr16   69969399       71197741     NR_003079      SNORD111
30  chr16   69969399       71197741     NR_003610       PDXDC2P
31  chr16   69969399       71197741     NR_033959        SMG1P7
32  chr16   69969399       71197741     NR_034083     VAC14-AS1
33  chr16   69969399       71197741     NR_036265     MIR1972-2
34  chr16   69969399       71197741     NR_037420     SNORD111B
35  chr16   69969399       71197741     NR_039997  LOC100506083
36  chr16   69969399       71197741     NR_126007     LOC400541
37  chr16   69969399       71197741     NR_135173  LOC105371328
38  chr20   14684410       14987845     NM_080676       MACROD2
39  chr20   14684410       14987845     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67728594       67894325  NM_001127384     CTNNA3
2   chr16   76256868       76368378  NM_001322181    CNTNAP4
4    chr2   51191206       51298561  NM_001330079      NRXN1
7    chr2   51191206       51298561     NR_135237  LOC730100
8    chr7   29537751       29815474  NM_001293069       CHN2
12   chr7   29537751       29815474  NM_001329997      PRR15
15   chr7   29537751       29815474     NR_024278  LOC646762
16   chr7   29537751       29815474     NR_027347    ZNRF2P2
17   chr7   29537751       29815474     NR_036482  DPY19L2P3
18   chr7   29537751       29815474     NR_039600   MIR550A3
19   chr8   62884719       64010151     NM_000370       TTPA
20   chr8   62884719       64010151  NM_001304533     NKAIN3
21   chr8   62884719       64010151     NM_003878        GGH
22   chr8   62884719       64010151     NR_027378  UG0898H09
24   chr9   28485955       28620482  NM_001258282     LINGO2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  111146881      111681442  NM_001324128    XPNPEP1
2   chr13   63136010       63313384     NR_047029  LINC00448
3   chr14   47757338       48067527  NM_001113498      MDGA2
6   chr15   77627819       77811330  NM_001304505     HMG20A
7   chr15   77627819       77811330     NM_024776      PEAK1
8    chr4  189260151      189380637     NR_033869  LINC01060
9    chr7   75903027       76153615  NM_001102594       DTX2
11   chr7   75903027       76153615  NM_001110199      SRRM3
12   chr7   75903027       76153615  NM_001110354        ZP3
13   chr7   75903027       76153615     NM_001540      HSPB1
15   chr7   75903027       76153615     NM_012479      YWHAG
16   chr7   75903027       76153615     NM_030570      UPK3B
17   chr7   75903027       76153615     NM_080744      SSC4D
18   chr7   75903027       76153615     NR_003262     FDPSP2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   21481518       21614418  NM_001077180        METTL9
2  chr16   21481518       21614418     NR_002594      SLC7A5P2
3  chr16   21481518       21614418     NR_027155        SMG1P3
4  chr16   21481518       21614418     NR_049833     MIR3680-2
5  chr16   21481518       21614418     NR_110930  LOC101927814
6  chr16   78820309       79032485     NM_016373          WWOX
7   chr2   34221463       34386826     NR_126403     LINC01317
8   chr2   34221463       34386826     NR_132381     LINC01318,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr13   54720212       54955740     NR_031628       MIR1297
1    chr15   30231497       30827176  NM_001282472       GOLGA8J
2    chr15   30231497       30827176  NM_001282484       GOLGA8R
3    chr15   30231497       30827176  NM_001301025          TJP1
4    chr15   30231497       30827176     NM_139320      CHRFAM7A
5    chr15   30231497       30827176     NR_026771  DKFZP434L187
6    chr15   30231497       30827176     NR_026859        ULK4P3
7    chr15   30231497       30827176     NR_033933       GOLGA8T
8    chr19    1779652        4588078     NM_000479           AMH
9    chr19    1779652        4588078  NM_001001520       HDGFRP2
10   chr19    1779652        4588078  NM_001013706         PLIN5
11   chr19    1779652        4588078  NM_001031735        IZUMO4
12   chr19    1779652        4588078     NM_001060        TBXA2R
13   chr19    1779652        4588078  NM_001080400         PLIN4
14   chr19    1779652        4588078  NM_001080543        CACTIN
15   chr19    1779652        4588078  NM_001101391        LINGO3
16   chr19    1779652        4588078  NM_001102651        ZNF554
17   chr19    1779652        4588078     NM_001130           AES
18   chr19    1779652        4588078  NM_001130111       ABHD17A
19   chr19    1779652        4588078  NM_001135580      C19orf71
20   chr19    1779652        4588078  NM_001136197          FZR1
21   chr19    1779652        4588078  NM_001136503        SMIM24
22   chr19    1779652        4588078  NM_001143986          TLE6
23   chr19    1779652        4588078  NM_001144761          TLE2
25   chr19    1779652        4588078  NM_001145165          DOHH
26   chr19    1779652        4588078  NM_001145640          ZFR2
27   chr19    1779652        4588078  NM_001159846          MPND
28   chr19    1779652        4588078  NM_001171091         UBXN6
29   chr19    1779652        4588078  NM_001172673         CELF5
30   chr19    1779652        4588078  NM_001172775        ZNF555
..     ...        ...            ...           ...           ...
95   chr19    1779652        4588078     NM_032737         LMNB2
96   chr19    1779652        4588078     NM_033064         ATCAY
97   chr19    1779652        4588078     NM_052847          GNG7
98   chr19    1779652        4588078     NM_052972          LRG1
99   chr19    1779652        4588078     NM_130807         MOB3A
100  chr19    1779652        4588078     NM_133261         GIPC3
101  chr19    1779652        4588078     NM_133475       ANKRD24
102  chr19    1779652        4588078     NM_138422         ADAT3
105  chr19    1779652        4588078     NM_144564       SLC39A3
106  chr19    1779652        4588078     NM_144616         JSRP1
107  chr19    1779652        4588078     NM_145173        DIRAS1
108  chr19    1779652        4588078     NM_152988        SPPL2B
109  chr19    1779652        4588078     NM_172251        MRPL54
111  chr19    1779652        4588078     NM_182973       TMPRSS9
112  chr19    1779652        4588078     NM_198532      C19orf35
115  chr19    1779652        4588078     NR_002602       SNORD37
117  chr19    1779652        4588078     NR_030367        MIR637
118  chr19    1779652        4588078     NR_031596       MIR1227
119  chr19    1779652        4588078     NR_031672      MIR1268A
120  chr19    1779652        4588078     NR_031730       MIR1909
122  chr19    1779652        4588078     NR_033400   CSNK1G2-AS1
123  chr19    1779652        4588078     NR_034114  LOC100288123
124  chr19    1779652        4588078     NR_036207       MIR4321
125  chr19    1779652        4588078     NR_038865    CACTIN-AS1
126  chr19    1779652        4588078     NR_039901       MIR4746
127  chr19    1779652        4588078     NR_106847       MIR6789
128  chr19    1779652        4588078     NR_106958       MIR7108
129  chr19    1779652        4588078     NR_107004       MIR7850
130  chr19    1779652        4588078     NR_110670  LOC100996351
131  chr19    1779652        4588078     NR_134931  LOC101928602

[109 rows x 5 columns],   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr8    7855260        7964984  NR_027424    FAM66E
1  chr8    7855260        7964984  NR_031689  MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63367339       64327922     NR_002171      OR7E156P
1   chr13   63367339       64327922     NR_047011     LINC00395
2   chr13   63367339       64327922     NR_047029     LINC00448
5   chr13   63367339       64327922     NR_126409     LINC00376
6    chr2  215490406      215725149     NM_000465         BARD1
7    chr2  215490406      215725149     NR_110292  LOC101928103
8    chr3    4104340        4355893  NM_001243723        SETMAR
10   chr4    8961675        9735752  NM_001040448       DEFB131
11   chr4    8961675        9735752  NM_001242326      USP17L25
19   chr4    8961675        9735752  NM_001256852      USP17L10
20   chr4    8961675        9735752  NM_001256853      USP17L12
22   chr4    8961675        9735752  NM_001256854      USP17L11
25   chr4    8961675        9735752  NM_001256855      USP17L13
26   chr4    8961675        9735752  NM_001256857      USP17L17
27   chr4    8961675        9735752  NM_001256860      USP17L19
28   chr4    8961675        9735752  NM_001256861      USP17L20
29   chr4    8961675        9735752  NM_001256894      USP17L15
30   chr4    8961675        9735752     NR_027279      USP17L6P
31   chr4    8961675        9735752     NR_031688      MIR548I2
32   chr4    8961675        9735752     NR_046416      USP17L9P,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   84129344       84336499  NM_001142699      DLG2
2  chr12   80982283       81096179  NM_001145026     PTPRQ
3  chr17   64496238       64755392     NM_002737     PRKCA
4   chr7   94245630       94603893  NM_001166160   PPP1R9A
6   chr7   94245630       94603893  NM_001184962     PEG10
7   chr7   94245630       94603893  NM_001301139      SGCE
8   chr7  110760306      110939444  NM_001099658     LRRN3
9   chr7  110760306      110939444  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   46953310       47435480     NM_000621         HTR2A
1   chr13   46953310       47435480  NM_001164213         LRCH1
2   chr13   46953310       47435480  NM_001286761        RUBCNL
4   chr13   46953310       47435480     NM_001984           ESD
6   chr13   46953310       47435480     NR_046612     HTR2A-AS1
7   chr13   46953310       47435480     NR_120426     LINC01198
8    chr2   50744973       50904364  NM_001330082         NRXN1
9    chr9   39098484       42532651  NM_001012419     ANKRD20A3
10   chr9   39098484       42532651  NM_001012421     ANKRD20A2
11   chr9   39098484       42532651  NM_001083124     SPATA31A3
12   chr9   39098484       42532651  NM_001085452     SPATA31A1
14   chr9   39098484       42532651  NM_001113541     SPATA31A5
16   chr9   39098484       42532651     NM_015667     SPATA31A7
18   chr9   39098484       42532651     NM_033160        ZNF658
19   chr9   39098484       42532651     NM_033655       CNTNAP3
20   chr9   39098484       42532651     NR_003528       ZNF658B
22   chr9   39098484       42532651     NR_003670        FGF7P3
23   chr9   39098484       42532651     NR_015363         GLIDR
24   chr9   39098484       42532651     NR_026801       FAM74A3
25   chr9   39098484       42532651     NR_026803       FAM74A1
29   chr9   39098484       42532651     NR_121572      GXYLT1P3
32   chr9   39098484       42532651     NR_126048  LOC102724238
33   chr9   39098484       42532651     NR_126049     LOC554249
35   chr9   39098484       42532651     NR_135122  LOC105379450
36   chr9   39098484       42532651     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4823814        4932897  NM_001004749        OR51A7
1   chr11    4823814        4932897  NM_001004753        OR51F2
2   chr11    4823814        4932897  NM_001004758        OR51S1
3   chr11    4823814        4932897  NM_001004759        OR51T1
4   chr11    4823814        4932897  NM_001005177        OR52R1
5   chr16    6767020        7054916  NM_001142334        RBFOX1
8    chr3  131187338      131320166  NM_001289112         CPNE4
9    chr3  131187338      131320166     NM_007208         MRPL3
12   chr3  131187338      131320166     NR_002985       SNORA58
13   chr5   12463991       12622062     NR_033383     LINC01194
14   chr7    6928273        7647430  NM_001037763       COL28A1
15   chr7    6928273        7647430     NM_019005          MIOS
16   chr7    6928273        7647430     NM_020156       C1GALT1
17   chr7    6928273        7647430     NR_034022  LOC100131257
18   chr7    6928273        7647430     NR_037454       MIR3683
19   chr7    6928273        7647430     NR_108073  LOC101927354
20   chr7    6928273        7647430     NR_110084  LOC101927391,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11  132182959      132558300  NM_001012393      OPCML
1  chr11  132182959      132558300  NM_001048209        NTM
6  chr13   88013207       88175196     NR_033829  MIR4500HG,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10    7079163        7462188  NM_001018039      SFMBT2
2   chr10    7079163        7462188     NR_132972    SNORD129
3   chr12   27209090       27941930  NM_001029874       REP15
4   chr12   27209090       27941930  NM_001080406    C12orf71
5   chr12   27209090       27941930  NM_001145010       SMCO2
6   chr12   27209090       27941930  NM_001146221      MANSC4
7   chr12   27209090       27941930  NM_001190864      MRPS35
8   chr12   27209090       27941930  NM_001248002      ARNTL2
9   chr12   27209090       27941930     NM_015000      STK38L
10  chr12   27209090       27941930     NM_020782      KLHL42
11  chr12   27209090       27941930     NM_177444     PPFIBP1
12  chr12   27209090       27941930     NR_109975  ARNTL2-AS1
13  chr15   43742354       43969575  NM_001141979     TP53BP1
14  chr15   43742354       43969575  NM_001190214     PPIP5K1
15  chr15   43742354       43969575  NM_001282309    CATSPER2
16  chr15   43742354       43969575     NM_002373       MAP1A
19  chr15   43742354       43969575     NM_020990      CKMT1B
20  chr15   43742354       43969575     NM_153700        STRC
24  chr16   29545344       29653193     NR_049833   MIR3680-2
25  chr16   29545344       29653193     NR_135305      SMG1P2
27   chr7    3420102        3688218     NM_152744        SDK1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12786843       12889442  NM_001080830   PRAMEF12
1    chr1   12786843       12889442  NM_001103170    AADACL3
2    chr1   12786843       12889442  NM_001146344   PRAMEF11
3    chr1   12786843       12889442  NM_001294139    PRAMEF1
5    chr1   12786843       12889442     NM_152290   C1orf158
6    chr1  108388501      108510245     NM_006113       VAV3
7    chr1  108388501      108510245     NR_046653   VAV3-AS1
8    chr1  108388501      108510245     NR_107006    MIR7852
9   chr11    6744322        7053711  NM_001004460     OR10A2
10  chr11    6744322        7053711  NM_001004489     OR2AG1
11  chr11    6744322        7053711  NM_001004490     OR2AG2
12  chr11    6744322        7053711  NM_001004684      OR2D3
13  chr11    6744322        7053711     NM_003696      OR6A2
14  chr11    6744322        7053711     NM_003700      OR2D2
15  chr11    6744322        7053711     NM_013249     ZNF214
16  chr11    6744322        7053711     NM_013250     ZNF215
17  chr11    6744322        7053711     NM_176822     NLRP14
18  chr11    6744322        7053711     NM_178168     OR10A5
19  chr11    6744322        7053711     NM_207186     OR10A4
20  chr12   89408500       89648041     NR_038385  LOC728084
21  chr15   21164084       21269834     NR_040094  LINC01193,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    1095212        1260100  NM_001304359        MUC5AC
1   chr11    1095212        1260100     NM_002457          MUC2
2   chr11    1095212        1260100     NM_002458         MUC5B
3   chr16   82986478       83126125  NM_001220488         CDH13
5   chr16   82986478       83126125     NR_110937  LOC101928417
6   chr18   56056140       56188565  NM_001144964        NEDD4L
11  chr18   56056140       56188565     NM_052947         ALPK2
12  chr18   56056140       56188565     NR_029667        MIR122
13  chr18   56056140       56188565     NR_039899       MIR3591
14   chr4  169199660      169333634  NM_001012967        DDX60L
16   chr4  169199660      169333634     NM_017631         DDX60
17   chr8    7844421        8135279     NR_003668    DEFB109P1B
18   chr8    7844421        8135279     NR_024361      FAM86B3P
21   chr8    7844421        8135279     NR_027424        FAM66E
22   chr8    7844421        8135279     NR_031689      MIR548I3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr20   14714675       14822768     NM_080676   MACROD2
1   chr7  110708241      110817549  NM_001099658     LRRN3
2   chr7  110708241      110817549  NM_001244606    IMMP2L,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr9   41876422       42029688  NR_003670        FGF7P3
1  chr9   41876422       42029688  NR_015363         GLIDR
4  chr9   41876422       42029688  NR_126048  LOC102724238
5  chr9   41876422       42029688  NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30245752       30764044  NM_001282472       GOLGA8J
1   chr15   30245752       30764044  NM_001282484       GOLGA8R
2   chr15   30245752       30764044  NM_001301025          TJP1
3   chr15   30245752       30764044     NM_139320      CHRFAM7A
4   chr15   30245752       30764044     NR_026771  DKFZP434L187
5   chr15   30245752       30764044     NR_026859        ULK4P3
6   chr15   30245752       30764044     NR_033933       GOLGA8T
7   chr16   88438604       88636854  NM_001127464        ZNF469
8   chr16   88438604       88636854  NM_001294340        ZC3H18
9   chr16   88438604       88636854     NM_153813         ZFPM1
10  chr16   88438604       88636854     NR_049821       MIR5189
11   chr2    1137384        1434731     NM_018968         SNTG2
12   chr2    1137384        1434731     NM_175719           TPO
14   chr2   51205926       51325012  NM_001330079         NRXN1
17   chr2   51205926       51325012     NR_135237     LOC730100
18   chr3    3888474        4074414  NM_001324189         LRRN1
19   chr9    9950038       10278581     NM_002839         PTPRD,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  215799329      216340590     NM_206933         USH2A
1   chr1  215799329      216340590     NR_125992  LOC102723833
2  chr20   14700786       15372315  NM_001033087       MACROD2
4  chr20   14700786       15372315     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67992622       68105328  NM_001127384        CTNNA3
2   chr16    8630941        9515149     NM_000303          PMM2
3   chr16    8630941        9515149     NM_000663          ABAT
4   chr16    8630941        9515149  NM_001042476       CARHSP1
10  chr16    8630941        9515149  NM_001286457          USP7
13  chr16    8630941        9515149     NM_014117      C16orf72
15  chr16    8630941        9515149     NM_015421       TMEM186
17  chr16    8630941        9515149     NM_024109       METTL22
18  chr16    8630941        9515149     NR_135195  LOC101927009
20  chr18   61832422       62432625     NR_033881     LOC284294
21  chr18   61832422       62432625     NR_033983     LINC01538
22   chr7  133253402      133408658     NM_021807         EXOC4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108359932      108570990     NM_006113          VAV3
1    chr1  108359932      108570990     NR_046653      VAV3-AS1
2    chr1  108359932      108570990     NR_107006       MIR7852
3    chr1  244965790      245137309  NM_001143943        EFCAB2
5    chr1  244965790      245137309  NM_001312871         COX20
7    chr1  244965790      245137309     NM_004501        HNRNPU
10   chr1  244965790      245137309     NR_111907  LOC101928068
11   chr1  244965790      245137309     NR_132782      SNORA100
12  chr17   48032010       48499501     NM_000088        COL1A1
13  chr17   48032010       48499501  NM_001166131          EME1
14  chr17   48032010       48499501  NM_001168215        TMEM92
15  chr17   48032010       48499501  NM_001199898          PDK2
18  chr17   48032010       48499501  NM_001257359        SAMD14
19  chr17   48032010       48499501     NM_001934          DLX4
20  chr17   48032010       48499501     NM_002204         ITGA3
22  chr17   48032010       48499501     NM_005220          DLX3
23  chr17   48032010       48499501     NM_016504        MRPL27
24  chr17   48032010       48499501     NM_018509        LRRC59
25  chr17   48032010       48499501     NM_022167         XYLT2
26  chr17   48032010       48499501     NM_032595       PPP1R9B
29  chr17   48032010       48499501     NR_024193         HILS1
30  chr17   48032010       48499501     NR_038230     LOC284080
31  chr17   48032010       48499501     NR_110806  LOC101927230
32  chr17   48032010       48499501     NR_125805    TMEM92-AS1
33  chr17   48032010       48499501     NR_135553          SGCA
34   chr7   64116351       64245921  NM_001282360        ZNF107
36   chr7   64116351       64245921     NR_106898       MIR6839
37   chr7  110594633      110852781  NM_001099658         LRRN3
38   chr7  110594633      110852781  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   19614852       21087530  NM_001142308        MALRD1
1   chr10   19614852       21087530  NM_001282736        PLXDC2
2   chr10   19614852       21087530     NM_006393          NEBL
4   chr10   19614852       21087530     NR_039822       MIR4675
5   chr10   19614852       21087530     NR_120646  LOC101928834
6   chr11   59433373       59719166  NM_001005324        OR10V1
7   chr11   59433373       59719166     NM_001062          TCN1
8   chr11   59433373       59719166  NM_001178040          STX3
9   chr11   59433373       59719166     NM_005142           GIF
10  chr11   59433373       59719166     NM_017840        MRPL16
11  chr11   59433373       59719166     NM_152716         PATL1
12  chr11   59433373       59719166     NR_045005       OR10V2P
13  chr11   59433373       59719166     NR_130719         OOSP1
14  chr13   63344104       63497354     NR_047029     LINC00448,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   19883306       21475936     NM_000270           PNP
1   chr14   19883306       21475936  NM_001001673        RNASE9
2   chr14   19883306       21475936  NM_001001968         OR6S1
3   chr14   19883306       21475936  NM_001004063         OR4K1
4   chr14   19883306       21475936  NM_001004479        OR11H4
5   chr14   19883306       21475936  NM_001004480        OR11H6
6   chr14   19883306       21475936  NM_001004712        OR4K14
7   chr14   19883306       21475936  NM_001004714        OR4K13
8   chr14   19883306       21475936  NM_001004715        OR4K17
9   chr14   19883306       21475936  NM_001004717         OR4L1
10  chr14   19883306       21475936  NM_001004723         OR4N2
11  chr14   19883306       21475936  NM_001004724         OR4N5
12  chr14   19883306       21475936  NM_001005483         OR4K5
13  chr14   19883306       21475936  NM_001005486        OR4K15
14  chr14   19883306       21475936  NM_001005500         OR4M1
15  chr14   19883306       21475936  NM_001005501         OR4K2
16  chr14   19883306       21475936  NM_001005503        OR11G2
17  chr14   19883306       21475936  NM_001012975       RNASE10
18  chr14   19883306       21475936  NM_001024822       RNASE12
19  chr14   19883306       21475936  NM_001029991       METTL17
20  chr14   19883306       21475936  NM_001097577           ANG
21  chr14   19883306       21475936  NM_001100814       TMEM55B
22  chr14   19883306       21475936  NM_001109997        KLHL33
24  chr14   19883306       21475936  NM_001145442         POTEM
25  chr14   19883306       21475936  NM_001197287        OR11H2
26  chr14   19883306       21475936  NM_001244249         APEX1
27  chr14   19883306       21475936  NM_001256588       SLC39A2
28  chr14   19883306       21475936  NM_001282193        RNASE4
29  chr14   19883306       21475936  NM_001319035          TEP1
30  chr14   19883306       21475936     NM_002933        RNASE1
31  chr14   19883306       21475936     NM_002934        RNASE2
32  chr14   19883306       21475936     NM_002935        RNASE3
33  chr14   19883306       21475936     NM_005484         PARP2
34  chr14   19883306       21475936     NM_005615        RNASE6
35  chr14   19883306       21475936     NM_006683        EDDM3A
36  chr14   19883306       21475936     NM_017807         OSGEP
37  chr14   19883306       21475936     NM_022360        EDDM3B
38  chr14   19883306       21475936     NM_138376          TTC5
39  chr14   19883306       21475936     NM_145250       RNASE11
40  chr14   19883306       21475936     NM_172194         OR4Q3
41  chr14   19883306       21475936     NM_182852      CCNB1IP1
44  chr14   19883306       21475936     NR_002312         RPPH1
45  chr14   19883306       21475936     NR_003693      SNORD126
46  chr14   19883306       21475936     NR_033909          ECRP
47  chr14   19883306       21475936     NR_073459       BMS1P18
48  chr14   19883306       21475936     NR_110139  LOC101929718
49  chr14   19883306       21475936     NR_110505  LOC100508046
50  chr14   19883306       21475936     NR_110526       DUXAP10
51  chr14   19883306       21475936     NR_122043     LOC254028
52  chr14   19883306       21475936     NR_122111     LINC01296
54  chr14   19883306       21475936     NR_133911       BMS1P22
55   chr3  105527490      105824221  NM_001321786          CBLB
61   chr5   17446556       17553794     NR_134270  LOC102723526
62   chr8   58121290       58460726     NR_026772     LINC00588
63   chr8   58121290       58460726     NR_038235     LINC01606
64   chr8   58121290       58460726     NR_038874     LOC286177
65   chr8   58121290       58460726     NR_125818  LOC101929488,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr10   38929783       39367841  NR_045000  ACTR3BP5,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   64220958       64345779  NM_001160183    ZNF138,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr19   20271044       20527505     NM_052852        ZNF486
1  chr19   20271044       20527505     NR_036053       MIR1270
2   chr5   99304286      100188494     NM_005668       ST8SIA4
3   chr5   99304286      100188494     NM_198507       FAM174A
4   chr5   99304286      100188494     NR_027503  LOC100133050
5   chr5   99304286      100188494     NR_031686       MIR548P
6   chr7    6720801        6827345  NM_001099697      RSPH10B2
7   chr7    6720801        6827345     NM_006956         ZNF12
8   chr7    6720801        6827345     NR_002217        PMS2CL,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   95767595       95900495     NM_032427         MAML2
1   chr14   79580416       79817865  NM_001272020         NRXN3
4   chr14   79580416       79817865     NR_135159  LOC105370586
5   chr15   28205156       28315541     NM_000275          OCA2
7    chr2  110183467      110521584  NM_001099289        SH3RF3
8    chr2  110183467      110521584  NM_001321504        SEPT10
10   chr2  110183467      110521584     NM_023016        SOWAHC
11  chr20    9090816        9365724     NM_000933         PLCB4
14   chr4   94127651       94240479     NM_001510         GRID2
15   chr6  129257811      129713816  NM_001079823         LAMA2
16   chr8    6602266        6780600     NM_005218         DEFB1
17   chr8    6602266        6780600     NM_018361        AGPAT5
18   chr8    6602266        6780600     NM_207411          XKR5
19   chr8    6602266        6780600     NR_039803      MIR4659A
20   chr8    6602266        6780600     NR_039807      MIR4659B
21   chr8    6602266        6780600     NR_045217    GS1-24F4.2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   73374830       74100161     NR_110676     LINC01360
2    chr1  245033883      245460494  NM_001143943        EFCAB2
4    chr1  245033883      245460494     NM_018012        KIF26B
6    chr1  245033883      245460494     NR_111907  LOC101928068
7   chr10   54201051       54306480     NR_120641     LINC01468
9   chr20   14625669       14726398     NM_080676       MACROD2
10  chr20   14645940       16178073  NM_001033087       MACROD2
12  chr20   14645940       16178073     NR_037841   MACROD2-AS1
14  chr20   14645940       16178073     NR_130924     LOC613266,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr19   33183761       33537683  NM_001105570    NUDT19
1  chr19   33183761       33537683  NM_001110822    TDRD12
2  chr19   33183761       33537683  NM_001300978    FAAP24
3  chr19   33183761       33537683     NM_014270    SLC7A9
4  chr19   33183761       33537683     NM_032816     CEP89
5  chr19   33183761       33537683     NM_033103     RHPN2,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr11    4187922        4341932  NR_047550  LOC100506082,    chrom  cnv_start  cnv_terminate       tx_name      gene_name
0  chr19    9353930        9463742  NM_001079935         OR7E24
1  chr19    9353930        9463742  NM_001172650  ZNF559-ZNF177
2  chr19    9353930        9463742  NM_001202406         ZNF559
5  chr19    9353930        9463742     NM_198535         ZNF699
6   chr2  110149261      110265968  NM_001099289         SH3RF3
7   chr7   64175186       64294272  NM_001160183         ZNF138,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   63450377       63847893  NM_001037325        CEP112
3   chr17   63450377       63847893     NM_004655         AXIN2
4   chr17   63450377       63847893     NR_131984        CRAT40
5    chr4  188295354      189742138  NM_001303419        TRIML2
6    chr4  188295354      189742138  NM_001304358         ZFP42
7    chr4  188295354      189742138     NM_178556        TRIML1
8    chr4  188295354      189742138     NR_033869     LINC01060
9    chr4  188295354      189742138     NR_038931     LOC339975
10   chr4  188295354      189742138     NR_110436  LOC100506272
11   chr7  110791518      111186342  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12  132060902      132312455  NM_001261411    SFSWAP
1   chr7   14786633       15083364     NM_004080      DGKB, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  189988496      190096672  NM_001317188      BRINP3
2   chr10   19611169       19711950  NM_001142308      MALRD1
3   chr14   67469787       67569946     NM_020806        GPHN
4    chr8    7210320        8208694  NM_001040705    DEFB107B
6    chr8    7210320        8208694  NM_001080826       PRAG1
7    chr8    7210320        8208694  NM_001081551    DEFB103A
9    chr8    7210320        8208694  NM_001081552     SPAG11A
10   chr8    7210320        8208694  NM_001164457     ZNF705G
11   chr8    7210320        8208694  NM_001193630     ZNF705B
12   chr8    7210320        8208694  NM_001205266      DEFB4B
13   chr8    7210320        8208694  NM_001256871     USP17L3
14   chr8    7210320        8208694  NM_001256872     USP17L8
15   chr8    7210320        8208694  NM_001282478     PRR23D2
17   chr8    7210320        8208694  NM_001282479     PRR23D1
19   chr8    7210320        8208694     NM_004942      DEFB4A
20   chr8    7210320        8208694     NM_058200     SPAG11B
25   chr8    7210320        8208694     NM_080389    DEFB104A
27   chr8    7210320        8208694     NM_152250    DEFB105A
29   chr8    7210320        8208694     NM_152251    DEFB106A
31   chr8    7210320        8208694     NR_003668  DEFB109P1B
32   chr8    7210320        8208694     NR_024361    FAM86B3P
35   chr8    7210320        8208694     NR_027423      FAM66B
36   chr8    7210320        8208694     NR_027424      FAM66E
37   chr8    7210320        8208694     NR_031689    MIR548I3
38   chr8    7210320        8208694     NR_046343    FAM90A7P
40   chr8    7210320        8208694     NR_046351   FAM90A10P,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   76552337       76837470  NM_001322181       CNTNAP4
2  chr16   76552337       76837470     NR_110934  LOC101928203
3   chr6  162273629      162462617     NM_013988         PARK2
4   chr8   97789035       98095306     NM_016134           CPQ
5   chr8   97789035       98095306     NR_125390  LOC101927066
6   chr9   43097071       43210967  NM_001012419     ANKRD20A3
7   chr9   43097071       43210967  NM_001012421     ANKRD20A2
8   chr9   43097071       43210967     NR_027472     LOC642929,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245056179      246484678  NM_001143943        EFCAB2
1    chr1  245056179      246484678  NM_001167740         SMYD3
3    chr1  245056179      246484678     NM_018012        KIF26B
6    chr1  245056179      246484678     NR_111907  LOC101928068
7   chr14   21737260       21847496     NM_007192       SUPT16H
8   chr14   21737260       21847496     NM_020366       RPGRIP1
9   chr14   21737260       21847496     NM_031314        HNRNPC
10   chr3   26030670       27111829  NM_001317808        LRRC3B
15   chr4   69230075       70481907     NM_001073       UGT2B11
16   chr4   69230075       70481907     NM_001075       UGT2B10
18   chr4   69230075       70481907     NM_001076       UGT2B15
19   chr4   69230075       70481907     NM_001077       UGT2B17
20   chr4   69230075       70481907  NM_001105677        UGT2A2
21   chr4   69230075       70481907  NM_001207004       UGT2B28
22   chr4   69230075       70481907  NM_001252274        UGT2A1
23   chr4   69230075       70481907  NM_001297615        UGT2B4
26   chr4   69230075       70481907  NM_001330719        UGT2B7
27   chr4   69230075       70481907     NM_014058     TMPRSS11E
28   chr4   69230075       70481907     NM_024743        UGT2A3
29   chr4   69230075       70481907     NR_136191  LOC105377267
30   chr4  128713821      128977313  NM_001190801          PLK4
31   chr4  128713821      128977313  NM_001317381        HSPA4L
34   chr4  128713821      128977313  NM_001319305        ABHD18
36   chr4  128713821      128977313     NM_152778         MFSD8
37   chr9     203515         327462  NM_001190458         DOCK8
38   chr9     203515         327462     NM_152569       C9orf66,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12803075       13071587  NM_001009611    PRAMEF4
1    chr1   12803075       13071587  NM_001010889    PRAMEF6
2    chr1   12803075       13071587  NM_001010890    PRAMEF9
3    chr1   12803075       13071587  NM_001012276    PRAMEF8
4    chr1   12803075       13071587  NM_001013631   HNRNPCL1
5    chr1   12803075       13071587  NM_001080830   PRAMEF12
6    chr1   12803075       13071587  NM_001099850   PRAMEF18
7    chr1   12803075       13071587  NM_001100631   PRAMEF22
8    chr1   12803075       13071587  NM_001146181   HNRNPCL3
9    chr1   12803075       13071587  NM_001146344   PRAMEF11
10   chr1   12803075       13071587  NM_001294139    PRAMEF1
11   chr1   12803075       13071587  NM_001302551   HNRNPCL4
12   chr1   12803075       13071587  NM_001306072   PRAMEF26
13   chr1   12803075       13071587  NM_001310134   PRAMEF25
15   chr1   12803075       13071587     NM_023014    PRAMEF2
16   chr1   12803075       13071587     NM_152290   C1orf158
17  chr15   98257745       98426034     NR_024172  LINC00923,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr10   81456374       81588976  NM_001278495      NUTM2B
1  chr10   81456374       81588976     NR_029407   LOC642361
2  chr10   81456374       81588976     NR_120611  NUTM2B-AS1
5   chr4   94146156       94256201     NM_001510       GRID2
6   chr7    4150735        4351257  NM_001079653        SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102419200      103275835     NR_110211         OLFM3
1   chr17   48095703       48318502     NM_000088        COL1A1
2   chr17   48095703       48318502  NM_001199898          PDK2
5   chr17   48095703       48318502  NM_001257359        SAMD14
6   chr17   48095703       48318502     NM_002204         ITGA3
8   chr17   48095703       48318502     NM_032595       PPP1R9B
9   chr17   48095703       48318502     NR_024193         HILS1
10  chr17   48095703       48318502     NR_038230     LOC284080
11  chr17   48095703       48318502     NR_110806  LOC101927230
12  chr17   48095703       48318502     NR_135553          SGCA,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   38165840       38760244     NM_001049      SSTR1
1   chr14   38165840       38760244  NM_001310135       TTC6
2   chr14   38165840       38760244     NM_175060    CLEC14A
3   chr14   38165840       38760244     NR_135286  LINC00517
4   chr15   28458131       28913553     NM_004667      HERC2
5   chr15   28458131       28913553     NR_033351    GOLGA8F
7   chr15   28458131       28913553     NR_033353    GOLGA8G
9   chr15   28458131       28913553     NR_036443    HERC2P9
10  chr15   28458131       28913553     NR_039734  MIR4509-3
12   chr6  116559526      116758289  NM_001322939        DSE
15   chr6  116559526      116758289     NM_003309     TSPYL1
16   chr6  116559526      116758289     NM_021648     TSPYL4
17   chr6  116559526      116758289     NM_152729     NT5DC1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20717919       20861301  NM_001145004      GOLGA6L6
1   chr15   20717919       20861301     NR_027411      GOLGA8CP
2    chr4   94155491       95687624  NM_001011516        PDLIM5
3    chr4   94155491       95687624  NM_001128429      SMARCAD1
5    chr4   94155491       95687624     NM_001203        BMPR1B
9    chr4   94155491       95687624     NM_001510         GRID2
10   chr4   94155491       95687624     NM_005172         ATOH1
11   chr4   94155491       95687624     NM_014485         HPGDS
13   chr4   94155491       95687624     NR_121610    BMPR1B-AS1
14   chr4   94155491       95687624     NR_125922  LOC101929210,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   82210458       83094666  NM_001297704    ADGRL2
2  chr15   65484555       65659279     NM_003613      CILP
3  chr15   65484555       65659279     NM_004884    IGDCC3
4  chr15   65484555       65659279     NM_017851    PARP16
5  chr17   21290445       21415233  NM_001194958    KCNJ18
6  chr17   21290445       21415233     NM_021012    KCNJ12
7   chr9   41893843       41999445     NR_003670    FGF7P3
8   chr9   41893843       41999445     NR_015363     GLIDR, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   78968560       79080245     NM_000959         PTGFR
1   chr10  100637955      100764520  NM_001166244         HPSE2
2   chr10  100637955      100764520     NR_106762       MIR6507
3    chr3  176634379      176775764  NM_001321193       TBL1XR1
5    chr9   39021678       39286151     NM_033655       CNTNAP3
6    chr9   41900806       43422235  NM_001012419     ANKRD20A3
8    chr9   41900806       43422235  NM_001012421     ANKRD20A2
10   chr9   41900806       43422235     NM_199244       FOXD4L4
11   chr9   41900806       43422235     NR_003670        FGF7P3
12   chr9   41900806       43422235     NR_015363         GLIDR
13   chr9   41900806       43422235     NR_026558        AQP7P3
14   chr9   41900806       43422235     NR_027472     LOC642929
15   chr9   41900806       43422235     NR_046175     LOC286297
16   chr9   41900806       43422235     NR_121570  LOC101928381
17   chr9   41900806       43422235     NR_121572      GXYLT1P3
21   chr9   41900806       43422235     NR_126048  LOC102724238
22   chr9   41900806       43422235     NR_126049     LOC554249
23   chr9   41900806       43422235     NR_135597  LOC101928195
24   chr9   41900806       43422235     NR_136299  LOC101929583
25   chr9   41900806       43422235     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12830048       12939860  NM_001009611       PRAMEF4
1    chr1   12830048       12939860  NM_001013631      HNRNPCL1
2    chr1   12830048       12939860  NM_001080830      PRAMEF12
3    chr1   12830048       12939860  NM_001146181      HNRNPCL3
4    chr1   12830048       12939860  NM_001146344      PRAMEF11
5    chr1   12830048       12939860  NM_001294139       PRAMEF1
6    chr1   12830048       12939860  NM_001302551      HNRNPCL4
8    chr1   12830048       12939860     NM_023014       PRAMEF2
9   chr12   86311311       86467013     NM_013244        MGAT4C
10  chr15   66982019       67126726     NM_005585         SMAD6
11   chr4   87976653       88489393  NM_001128310       SPARCL1
12   chr4   87976653       88489393  NM_001166693          AFF1
13   chr4   87976653       88489393  NM_001248011         NUDT9
14   chr4   87976653       88489393  NM_001292003         KLHL8
18   chr4   87976653       88489393     NM_016245      HSD17B11
19   chr4   87976653       88489393     NM_178135      HSD17B13
21   chr4   87976653       88489393     NR_049891       MIR5705
22   chr5   16057591       16235301  NM_001102562       MARCH11
23   chr9   41885050       42028175     NR_003670        FGF7P3
24   chr9   41885050       42028175     NR_015363         GLIDR
27   chr9   41885050       42028175     NR_126048  LOC102724238
28   chr9   41885050       42028175     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67726099       67912023  NM_001127384     CTNNA3
2   chr16   14822156       15016051  NM_001277323     NPIPA3
3   chr16   14822156       15016051  NM_001277324     NPIPA2
4   chr16   14822156       15016051     NM_014287      NOMO1
5   chr16   14822156       15016051     NR_023387    ABCC6P2
6   chr16   14822156       15016051     NR_036140  MIR3179-1
7   chr16   14822156       15016051     NR_036141  MIR3180-1
8   chr16   14822156       15016051     NR_036142  MIR3180-2
9   chr16   14822156       15016051     NR_128713  MIR3670-4
10  chr20    2988434        3179601     NM_000490        AVP
11  chr20    2988434        3179601     NM_000915        OXT
12  chr20    2988434        3179601  NM_001267584      UBOX5
13  chr20    2988434        3179601  NM_001282533      LZTS3
14  chr20    2988434        3179601     NM_002836      PTPRA
15  chr20    2988434        3179601     NM_021826    FASTKD5
16  chr20    2988434        3179601     NM_023935     DDRGK1
17  chr20    2988434        3179601     NM_030811     MRPS26
20  chr20    2988434        3179601     NM_178332      GNRH2
21  chr20    2988434        3179601     NR_038395  UBOX5-AS1
22  chr22   32496122       32598349     NM_000343     SLC5A1
23  chr22   32496122       32598349  NM_001010859   C22orf42
24  chr22   32496122       32598349  NM_001098527      RFPL2
29  chr22   32496122       32598349     NR_040114    AP1B1P1
30   chr3  116114956      116239679  NM_001318915      LSAMP
31   chr5  152159516      152296444     NR_109877  LINC01470,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48330127       48465377  NM_001004702     OR4C3
1  chr11   48330127       48465377  NM_001005513    OR4C45
2  chr15   20644241       20774266  NM_001145004  GOLGA6L6
3  chr15   20644241       20774266     NR_027411  GOLGA8CP
4  chr15   20644241       20774266     NR_036432   HERC2P3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr4  128711991      128850947  NM_001190801      PLK4
1  chr4  128711991      128850947  NM_001317381    HSPA4L
5  chr4  128711991      128850947     NM_152778     MFSD8
6  chr7  110689372      110867082  NM_001099658     LRRN3
7  chr7  110689372      110867082  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72583786       72713577     NM_013381         TRHDE
1   chr12   72583786       72713577     NR_026836     TRHDE-AS1
3   chr12   72669735       72835835     NM_013381         TRHDE
4    chr7  110679169      110892120  NM_001099658         LRRN3
5    chr7  110679169      110892120  NM_001244606        IMMP2L
7    chr8    4159701        4268936     NM_033225         CSMD1
8    chr9   44239014       45042246     NR_027421        FAM27C
9    chr9   44239014       45042246     NR_121564  LOC101927827
10   chr9   44239014       45042246     NR_121606  LOC102723709
11   chr9   44239014       45042246     NR_126050  LOC103908605
12   chr9   44239014       45042246     NR_144466  LOC105379807,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   17772178       17885758     NR_039770   MIR3974
1  chr15   77632039       77739936  NM_001304505    HMG20A
2  chr15   77632039       77739936     NM_024776     PEAK1
3  chr21   22332277       22492588     NM_004540     NCAM2,   chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr2   53449315       53990360  NM_001164165  GPR75-ASB3
1  chr2   53449315       53990360  NM_001201965        ASB3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   71078278       71224643  NM_001198542         HYDIN
3    chr5     128456         938737  NM_001009877          BRD9
4    chr5     128456         938737  NM_001080478       LRRC14B
5    chr5     128456         938737  NM_001166260        TRIP13
6    chr5     128456         938737  NM_001242412          AHRR
7    chr5     128456         938737  NM_001284351        SLC9A3
9    chr5     128456         938737     NM_004168          SDHA
11   chr5     128456         938737     NM_007030          TPPP
12   chr5     128456         938737     NM_007277         EXOC3
13   chr5     128456         938737     NM_013232         PDCD6
14   chr5     128456         938737     NM_018140         CEP72
15   chr5     128456         938737     NM_024786       ZDHHC11
16   chr5     128456         938737     NM_052909      PLEKHG4B
17   chr5     128456         938737     NM_145265       CCDC127
18   chr5     128456         938737     NR_024158        PP7080
19   chr5     128456         938737     NR_039661       MIR4456
21   chr5     128456         938737     NR_103444  LOC100996325
22   chr5     128456         938737     NR_104613         HRAT5
23   chr5     128456         938737     NR_125375  LOC100288152
24   chr5     128456         938737     NR_126522     EXOC3-AS1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7  110523042      111144561  NM_001099658     LRRN3
1  chr7  110523042      111144561  NM_001244606    IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   96009999       96287273  NM_001034914        KCNIP3
1  chr2   96009999       96287273  NM_001164464       TRIM43B
3  chr2   96009999       96287273     NM_016044        FAHD2A
4  chr2   96009999       96287273     NM_138800        TRIM43
5  chr4   69226298       69376653     NM_014058     TMPRSS11E
6  chr6  140390122      140941244     NR_037441       MIR3668
7  chr6  140390122      140941244     NR_121622  LOC100507477,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143667128      143803123  NM_001123068       PPIAL4G
1    chr1  143667128      143803123     NR_104014     LINC01138
2    chr1  143667128      143803123     NR_106967       MIR6077
3    chr1  143667128      143803123     NR_111930  LOC100132057
4   chr14   79547321       79823827  NM_001272020         NRXN3
7   chr14   79547321       79823827     NR_135159  LOC105370586
8    chr7   10968692       11114122     NM_002489        NDUFA4
9    chr7   10968692       11114122     NM_014660         PHF14
11   chr7   64063497       64174038  NM_001282360        ZNF107
12   chr7   64063497       64174038     NR_077227  LOC100128885
14   chr7   64063497       64174038     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   63313217       63438292     NR_047029  LINC00448
3   chr4   69242607       69373366     NM_014058  TMPRSS11E
4   chr8    4014847        4132328     NM_033225      CSMD1
5   chr9   72249138       72379620  NM_001099666      PTAR1
6   chr9   72249138       72379620     NM_001163      APBA1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145300870      146718991  NM_001012758        NUDT17
1    chr1  145300870      146718991  NM_001039888      ANKRD34A
2    chr1  145300870      146718991  NM_001097612        GPR89A
3    chr1  145300870      146718991  NM_001101663        NBPF11
4    chr1  145300870      146718991  NM_001144829          FMO5
5    chr1  145300870      146718991  NM_001184795        PEX11B
6    chr1  145300870      146718991  NM_001201325         PDZK1
7    chr1  145300870      146718991  NM_001256336         CHD1L
8    chr1  145300870      146718991  NM_001277444         NBPF9
9    chr1  145300870      146718991  NM_001278141        NBPF12
10   chr1  145300870      146718991  NM_001278267        NBPF20
11   chr1  145300870      146718991  NM_001280799       ANKRD35
12   chr1  145300870      146718991  NM_001302371        NBPF10
13   chr1  145300870      146718991  NM_001303040        ITGA10
14   chr1  145300870      146718991  NM_001303456        POLR3C
15   chr1  145300870      146718991  NM_001313972         TXNIP
18   chr1  145300870      146718991     NM_005105         RBM8A
19   chr1  145300870      146718991     NM_005399        PRKAB2
20   chr1  145300870      146718991     NM_006099         PIAS3
23   chr1  145300870      146718991     NM_007053         CD160
24   chr1  145300870      146718991     NM_014455        RNF115
25   chr1  145300870      146718991     NM_032305       POLR3GL
26   chr1  145300870      146718991     NM_145277          HFE2
27   chr1  145300870      146718991     NM_153713         LIX1L
28   chr1  145300870      146718991     NR_002305       PDIA3P1
29   chr1  145300870      146718991     NR_002328        GNRHR2
30   chr1  145300870      146718991     NR_024442     LOC728989
32   chr1  145300870      146718991     NR_103466       NBPF13P
35   chr1  145300870      146718991     NR_104217       NBPF25P
37   chr1  145300870      146718991     NR_106794       MIR6736
39   chr1  145300870      146718991     NR_111936       PDZK1P1
40   chr1  145300870      146718991     NR_121645       RNVU1-8
41   chr1  145300870      146718991     NR_125967  LOC101928979
42   chr1  145300870      146718991     NR_135559  LOC100505824
43  chr10   67979071       68117999  NM_001127384        CTNNA3
45   chr4   71414294       71533523     NM_016519          AMBN
46   chr4   71414294       71533523     NM_031889          ENAM
47   chr4   71414294       71533523     NM_144646        JCHAIN
48   chr7   64066977       64286826  NM_001160183        ZNF138
49   chr7   64066977       64286826  NM_001282360        ZNF107
51   chr7   64066977       64286826     NR_077227  LOC100128885
53   chr7   64066977       64286826     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  129456721      131127367  NM_001099771         POTEF
1   chr2  129456721      131127367  NM_001142370        PTPN18
2   chr2  129456721      131127367  NM_001258307       CCDC74B
3   chr2  129456721      131127367  NM_001320304          IMP4
4   chr2  129456721      131127367  NM_001321118       CCDC115
6   chr2  129456721      131127367  NM_001330282         MZT2B
7   chr2  129456721      131127367     NM_017951         SMPD4
8   chr2  129456721      131127367     NM_032144         RAB6C
10  chr2  129456721      131127367     NM_207312        TUBA3E
11  chr2  129456721      131127367     NR_026740     LOC389033
12  chr2  129456721      131127367     NR_026758        FAR2P1
14  chr2  129456721      131127367     NR_033903       MED15P9
15  chr2  129456721      131127367     NR_036537     RAB6C-AS1
16  chr2  129456721      131127367     NR_110278  LOC101927881
17  chr2  129456721      131127367     NR_110285  LOC101927924
18  chr2  129456721      131127367     NR_122040     LOC151121
19  chr3   60021978       60135856  NM_001320899          FHIT,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81502729       81707682     NM_003019       SFTPD
1   chr10   81502729       81707682     NR_002724       MBL1P
2   chr10   81502729       81707682     NR_029407   LOC642361
3   chr10   81502729       81707682     NR_033857     BMS1P21
4   chr10   81502729       81707682     NR_120611  NUTM2B-AS1
7   chr11   81840583       81960585     NR_120571   MIR4300HG
8   chr15   79727054       80589711     NM_000137         FAH
9   chr15   79727054       80589711  NM_001100879        ST20
11  chr15   79727054       80589711  NM_001114735      BCL2A1
12  chr15   79727054       80589711  NM_001199758       MTHFS
13  chr15   79727054       80589711  NM_001199760  ST20-MTHFS
14  chr15   79727054       80589711  NM_001242911      ZFAND6
20  chr15   79727054       80589711     NM_015206    KIAA1024
21  chr15   79727054       80589711     NR_028330    ST20-AS1
22  chr15   79727054       80589711     NR_033833   LINC00927
25  chr15   79727054       80589711     NR_120317   LINC01314
26   chr9   28723994       28854056  NM_001258282      LINGO2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  108383840      108527265     NM_006113          VAV3
1  chr1  108383840      108527265     NR_046653      VAV3-AS1
2  chr1  108383840      108527265     NR_107006       MIR7852
3  chr2   97224707       97336827  NM_001115016        KANSL3
4  chr2   97224707       97336827  NM_001293083        FER1L5
6  chr9   44265442       44843343     NR_121564  LOC101927827
7  chr9   44265442       44843343     NR_126050  LOC103908605, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr17   14064771       14279958  NM_001007530     CDRT15
1  chr17   14064771       14279958     NM_001303      COX10
2  chr17   14064771       14279958     NM_006041   HS3ST3B1
3  chr17   14064771       14279958     NR_026880   MGC12916
4  chr19     121293         287669     NM_177526      PLPP2
6  chr19     121293         287669     NR_028324  LINC01002
7   chr3     795047         913419     NR_110118  LINC01266
8   chr6    1867764        1967900  NM_001253846       GMDS,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81455203       81749188  NM_001278495      NUTM2B
1   chr10   81455203       81749188     NM_003019       SFTPD
2   chr10   81455203       81749188     NR_002724       MBL1P
3   chr10   81455203       81749188     NR_029407   LOC642361
4   chr10   81455203       81749188     NR_033857     BMS1P21
5   chr10   81455203       81749188     NR_120611  NUTM2B-AS1
8   chr16   88502699       88718963     NM_000101        CYBA
9   chr16   88502699       88718963  NM_001127464      ZNF469
10  chr16   88502699       88718963  NM_001294340      ZC3H18
11  chr16   88502699       88718963     NM_002461         MVD
12  chr16   88502699       88718963     NM_013278       IL17C
13  chr16   88502699       88718963     NM_153813       ZFPM1
14  chr16   88502699       88718963     NR_049821     MIR5189,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  100650307      100771437  NM_001166244         HPSE2
1   chr10  100650307      100771437     NR_106762       MIR6507
2   chr15   28780442       29026055  NM_001282468       GOLGA8M
3   chr15   28780442       29026055     NR_026589       WHAMMP2
4   chr15   28780442       29026055     NR_036443       HERC2P9
5   chr15   30265334       30525663  NM_001282472       GOLGA8J
6   chr15   30265334       30525663     NR_026771  DKFZP434L187
7   chr15   30265334       30525663     NR_026859        ULK4P3
8   chr15   30265334       30525663     NR_033933       GOLGA8T
9   chr18   56104444       56252505     NM_052947         ALPK2
10  chr18   56104444       56252505     NR_029667        MIR122
11  chr18   56104444       56252505     NR_039899       MIR3591,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   82359643       83137564  NM_001297704     ADGRL2
2   chr17   21632506       21918472     NR_027084   FLJ36000
3   chr17   21632506       21918472     NR_028336    FAM27E5
4    chr4   69246752       69371475     NM_014058  TMPRSS11E
5    chr7   64097521       64357741  NM_001160183     ZNF138
6    chr7   64097521       64357741  NM_001282360     ZNF107
9    chr7   64097521       64357741     NR_106898    MIR6839
10   chr7  102155930      102303997  NM_001031618     SPDYE2
12   chr7  102155930      102303997  NM_001097615    POLR2J3
13   chr7  102155930      102303997  NM_001114403     UPK3BL
14   chr7  102155930      102303997  NM_001277335     RASA4B
16   chr7  102155930      102303997     NM_006989      RASA4
17   chr7  102155930      102303997     NM_032959    POLR2J2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   85702464       85805787  NM_001310153   GOLGA6L3
1  chr15   85702464       85805787     NR_049748  LOC642423
2  chr19   21866056       22044066  NM_001256650      ZNF43
4  chr19   21866056       22044066     NM_173531     ZNF100
5  chr19   21866056       22044066     NR_024523  LOC641367,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   19892359       20129276  NM_001145442          POTEM
1   chr14   19892359       20129276     NR_073459        BMS1P18
2   chr14   19892359       20129276     NR_110505   LOC100508046
3   chr14   19892359       20129276     NR_110526        DUXAP10
4   chr14   19892359       20129276     NR_122111      LINC01296
6   chr14   19892359       20129276     NR_133911        BMS1P22
7   chr17    3378352        3801361     NM_000049           ASPA
8   chr17    3378352        3801361  NM_001014764           EMC6
9   chr17    3378352        3801361  NM_001114118          NCBP3
11  chr17    3378352        3801361  NM_001204698        TAX1BP3
12  chr17    3378352        3801361  NM_001321336        SPATA22
13  chr17    3378352        3801361     NM_002208          ITGAE
14  chr17    3378352        3801361     NM_002558          P2RX1
15  chr17    3378352        3801361     NM_004937           CTNS
16  chr17    3378352        3801361     NM_013276           SHPK
17  chr17    3378352        3801361     NM_018727          TRPV1
18  chr17    3378352        3801361     NM_031965           GSG2
19  chr17    3378352        3801361     NM_032294         CAMKK1
23  chr17    3378352        3801361     NM_145068          TRPV3
26  chr17    3378352        3801361     NM_175080          P2RX5
27  chr17    3378352        3801361     NR_037928  P2RX5-TAX1BP3
28   chr2  186296787      186817348     NM_173651          FSIP2
29   chr2  186296787      186817348     NR_110214   LOC101927196
32   chr2  186296787      186817348     NR_144453      FSIP2-AS1
34   chr7   64104574       64250095  NM_001282360         ZNF107
36   chr7   64104574       64250095     NR_106898        MIR6839
37   chr7  133198443      133311191     NM_021807          EXOC4,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr10   19617304       19837608  NM_001142308      MALRD1
1  chr10   88966070       89414041  NM_001099338      NUTM2A
2  chr10   88966070       89414041  NM_001178118      MINPP1
4  chr10   88966070       89414041     NR_024397  NUTM2A-AS1
5  chr10   88966070       89414041     NR_029408   LINC00863
6  chr10   88966070       89414041     NR_039825     MIR4678
7  chr10   88966070       89414041     NR_046091   LINC00864
8  chr10   88966070       89414041     NR_075100      NUTM2D,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16    6443685        6555329  NM_001308117    RBFOX1
2   chr6  162740445      162865233     NM_013988     PARK2,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr9     226534         355253  NM_001190458     DOCK8
2  chr9   39106822       39238964     NM_033655   CNTNAP3,   chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr2   25146603       25349199  NM_001198559      DNAJC27
1  chr2   25146603       25349199  NM_001319099        EFR3B
3  chr2   25146603       25349199     NR_034113  DNAJC27-AS1
4  chr5  152235345      152387408     NR_109877    LINC01470
5  chr9   15001103       15144710     NR_003920    LOC389705, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81463501       81876617  NM_001270367       TMEM254
3   chr10   81463501       81876617  NM_001278495        NUTM2B
4   chr10   81463501       81876617     NM_003019         SFTPD
5   chr10   81463501       81876617     NR_002724         MBL1P
6   chr10   81463501       81876617     NR_027431   TMEM254-AS1
7   chr10   81463501       81876617     NR_029407     LOC642361
8   chr10   81463501       81876617     NR_033857       BMS1P21
9   chr10   81463501       81876617     NR_120611    NUTM2B-AS1
12  chr11    4182432        5558829     NM_000184          HBG2
13  chr11    4182432        5558829     NM_000518           HBB
14  chr11    4182432        5558829     NM_000519           HBD
15  chr11    4182432        5558829     NM_000559          HBG1
16  chr11    4182432        5558829  NM_001001916        OR52J3
17  chr11    4182432        5558829  NM_001004137        OR52M1
18  chr11    4182432        5558829  NM_001004748        OR51A2
19  chr11    4182432        5558829  NM_001004749        OR51A7
20  chr11    4182432        5558829  NM_001004750        OR51B6
21  chr11    4182432        5558829  NM_001004751        OR51D1
22  chr11    4182432        5558829  NM_001004752        OR51F1
23  chr11    4182432        5558829  NM_001004753        OR51F2
24  chr11    4182432        5558829  NM_001004754        OR51I2
25  chr11    4182432        5558829  NM_001004755        OR51L1
26  chr11    4182432        5558829  NM_001004756        OR51M1
27  chr11    4182432        5558829  NM_001004757        OR51Q1
28  chr11    4182432        5558829  NM_001004758        OR51S1
29  chr11    4182432        5558829  NM_001004759        OR51T1
30  chr11    4182432        5558829  NM_001004760        OR51V1
31  chr11    4182432        5558829  NM_001005160        OR52A5
32  chr11    4182432        5558829  NM_001005161        OR52B4
33  chr11    4182432        5558829  NM_001005163        OR52D1
..    ...        ...            ...           ...           ...
61  chr11    4182432        5558829     NR_133006        OLFM5P
62  chr12   72645906       72758517     NM_013381         TRHDE
63  chr12   72645906       72758517     NR_026836     TRHDE-AS1
65   chr2  234399663      234808766     NM_000463        UGT1A1
66   chr2  234399663      234808766  NM_001001394        DNAJB3
67   chr2  234399663      234808766     NM_001072        UGT1A6
68   chr2  234399663      234808766  NM_001282962         HJURP
69   chr2  234399663      234808766  NM_001287395        MROH2A
70   chr2  234399663      234808766     NM_007120        UGT1A4
71   chr2  234399663      234808766     NM_018218         USP40
72   chr2  234399663      234808766     NM_019075       UGT1A10
73   chr2  234399663      234808766     NM_019076        UGT1A8
74   chr2  234399663      234808766     NM_019077        UGT1A7
75   chr2  234399663      234808766     NM_019078        UGT1A5
76   chr2  234399663      234808766     NM_019093        UGT1A3
77   chr2  234399663      234808766     NM_021027        UGT1A9
79   chr2  234399663      234808766     NR_024322        MSL3P1
80   chr2  234399663      234808766     NR_037694  LOC100286922
81  chr20   25308263       25596972  NM_001042472        ABHD12
82  chr20   25308263       25596972  NM_001318226          NINL
84  chr20   25308263       25596972     NM_021067         GINS1
85  chr20   25308263       25596972     NM_152667          NANP
86   chr5   16922923       17547484  NM_001271606         BASP1
88   chr5   16922923       17547484     NM_012334         MYO10
89   chr5   16922923       17547484     NR_027253     LOC285696
90   chr5   16922923       17547484     NR_033975     LOC401177
91   chr5   16922923       17547484     NR_134270  LOC102723526
93   chr5   16922923       17547484     NR_134273  LOC101929544
96   chr7   21403169       21560468  NM_001326542           SP4
97   chr7   21403169       21560468     NR_031594       MIR1183

[86 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   19597480       19952457  NM_001142308    MALRD1
1  chr12   86253092       86390327     NM_006183       NTS
2  chr12   86253092       86390327     NM_013244    MGAT4C
3   chr9   28144995       28249596  NM_001258282    LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145354684      145766426  NM_001012758        NUDT17
1    chr1  145354684      145766426  NM_001039888      ANKRD34A
2    chr1  145354684      145766426  NM_001097612        GPR89A
3    chr1  145354684      145766426  NM_001184795        PEX11B
4    chr1  145354684      145766426  NM_001201325         PDZK1
5    chr1  145354684      145766426  NM_001277444         NBPF9
6    chr1  145354684      145766426  NM_001278267        NBPF20
7    chr1  145354684      145766426  NM_001280799       ANKRD35
8    chr1  145354684      145766426  NM_001302371        NBPF10
9    chr1  145354684      145766426  NM_001303040        ITGA10
10   chr1  145354684      145766426  NM_001303456        POLR3C
11   chr1  145354684      145766426  NM_001313972         TXNIP
13   chr1  145354684      145766426     NM_005105         RBM8A
14   chr1  145354684      145766426     NM_006099         PIAS3
17   chr1  145354684      145766426     NM_007053         CD160
18   chr1  145354684      145766426     NM_014455        RNF115
19   chr1  145354684      145766426     NM_032305       POLR3GL
20   chr1  145354684      145766426     NM_145277          HFE2
21   chr1  145354684      145766426     NM_153713         LIX1L
22   chr1  145354684      145766426     NR_002328        GNRHR2
26   chr1  145354684      145766426     NR_104217       NBPF25P
27   chr1  145354684      145766426     NR_106794       MIR6736
28   chr1  145354684      145766426     NR_125967  LOC101928979
29  chr21   22395982       22592037     NM_004540         NCAM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   68549218       69149421  NM_001199280          HAS3
1   chr16   68549218       69149421  NM_001305204         ZFP90
3   chr16   68549218       69149421  NM_001317184          CDH1
4   chr16   68549218       69149421  NM_001317195          CDH3
6   chr16   68549218       69149421     NM_024562        TANGO6
8   chr16   68549218       69149421     NR_106988     MIR7641-2
9   chr22   20614296       20766147  NM_001256523         ZNF74
10  chr22   20614296       20766147     NR_136569     LOC729461
11  chr22   20614296       20766147     NR_136572  LOC101927859
12   chr6  162623704      162733940     NM_013988         PARK2
13   chr9   28592477       28818225  NM_001258282        LINGO2
15   chr9   67216267       67384171     NR_002817        AQP7P1
16   chr9   67216267       67384171     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   12833889       12949566  NM_001009611   PRAMEF4
1    chr1   12833889       12949566  NM_001013631  HNRNPCL1
2    chr1   12833889       12949566  NM_001080830  PRAMEF12
3    chr1   12833889       12949566  NM_001146181  HNRNPCL3
4    chr1   12833889       12949566  NM_001146344  PRAMEF11
5    chr1   12833889       12949566  NM_001294139   PRAMEF1
6    chr1   12833889       12949566  NM_001302551  HNRNPCL4
8    chr1   12833889       12949566     NM_023014   PRAMEF2
9   chr12    5076058        5254013     NM_002234     KCNA5
10  chr14   26991323       27095774     NM_002515     NOVA1
12  chr18   24743792       24890736  NM_001256316     CHST9
13   chr6  128680066      128817830  NM_001291982     PTPRK, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   63119848       63266100  NR_047029  LINC00448
1  chr17    5535508        6274739  NM_015253      WSCD1
2  chr17    5535508        6274739  NR_040000  LOC339166,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  176983115      177387397  NM_001286164         ASTN1
2    chr1  176983115      177387397     NM_021165        BRINP2
4    chr1  176983115      177387397     NR_030163        MIR488
5    chr1  176983115      177387397     NR_126001  LOC102724661
6   chr11   55783257       56372335  NM_001001921        OR5AS1
7   chr11   55783257       56372335  NM_001002907         OR8K1
8   chr11   55783257       56372335  NM_001003750         OR8I2
9   chr11   55783257       56372335  NM_001004058         OR8K5
10  chr11   55783257       56372335  NM_001004064         OR8J3
11  chr11   55783257       56372335  NM_001004741        OR5M10
12  chr11   55783257       56372335  NM_001004742         OR5M3
13  chr11   55783257       56372335  NM_001004743         OR5M9
14  chr11   55783257       56372335  NM_001004744         OR5R1
15  chr11   55783257       56372335  NM_001004745         OR5T1
16  chr11   55783257       56372335  NM_001004746         OR5T2
17  chr11   55783257       56372335  NM_001004747         OR5T3
18  chr11   55783257       56372335  NM_001005199         OR8H1
19  chr11   55783257       56372335  NM_001005200         OR8H2
20  chr11   55783257       56372335  NM_001005201         OR8H3
21  chr11   55783257       56372335  NM_001005202         OR8K3
22  chr11   55783257       56372335  NM_001005204         OR8U1
23  chr11   55783257       56372335  NM_001005205         OR8J1
24  chr11   55783257       56372335  NM_001005245        OR5M11
25  chr11   55783257       56372335  NM_001005282         OR5M8
26  chr11   55783257       56372335  NM_001005492         OR5J2
27  chr11   55783257       56372335  NM_001013356         OR8U8,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68030453       68311213  NM_001127384        CTNNA3
2   chr22   20085866       20199754  NM_001190326         DGCR8
3   chr22   20085866       20199754  NM_001243537       CCDC188
4   chr22   20085866       20199754  NM_001278639        RANBP1
7   chr22   20085866       20199754     NM_013373        ZDHHC8
8   chr22   20085866       20199754     NM_022727        TRMT2A
9   chr22   20085866       20199754     NR_026919     LINC00896
10  chr22   20085866       20199754     NR_038460     LOC284865
11  chr22   20085866       20199754     NR_106874       MIR6816
12   chr7   64093278       64309411  NM_001160183        ZNF138
13   chr7   64093278       64309411  NM_001282360        ZNF107
16   chr7   64093278       64309411     NR_106898       MIR6839
17   chr9   39034758       39545971  NM_001085452     SPATA31A1
18   chr9   39034758       39545971     NM_033655       CNTNAP3
19   chr9   39034758       39545971     NR_003528       ZNF658B
20   chr9   39034758       39545971     NR_026803       FAM74A1
21   chr9   41889052       42549180  NM_001012419     ANKRD20A3
22   chr9   41889052       42549180  NM_001012421     ANKRD20A2
23   chr9   41889052       42549180     NR_003670        FGF7P3
24   chr9   41889052       42549180     NR_015363         GLIDR
25   chr9   41889052       42549180     NR_121572      GXYLT1P3
28   chr9   41889052       42549180     NR_126048  LOC102724238
29   chr9   41889052       42549180     NR_126049     LOC554249
30   chr9   41889052       42549180     NR_136310  LOC105379252,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2  186549685      186792235  NM_173651         FSIP2
1  chr2  186549685      186792235  NR_110214  LOC101927196
4  chr2  186549685      186792235  NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12788903       13207227  NM_001009611      PRAMEF4
1    chr1   12788903       13207227  NM_001010889      PRAMEF6
2    chr1   12788903       13207227  NM_001010890      PRAMEF9
3    chr1   12788903       13207227  NM_001012276      PRAMEF8
4    chr1   12788903       13207227  NM_001013407      PRAMEF5
5    chr1   12788903       13207227  NM_001013631     HNRNPCL1
6    chr1   12788903       13207227  NM_001080830     PRAMEF12
7    chr1   12788903       13207227  NM_001099850     PRAMEF18
8    chr1   12788903       13207227  NM_001100631     PRAMEF22
9    chr1   12788903       13207227  NM_001136561     HNRNPCL2
10   chr1   12788903       13207227  NM_001146181     HNRNPCL3
11   chr1   12788903       13207227  NM_001146344     PRAMEF11
12   chr1   12788903       13207227  NM_001294139      PRAMEF1
13   chr1   12788903       13207227  NM_001302551     HNRNPCL4
14   chr1   12788903       13207227  NM_001306072     PRAMEF26
15   chr1   12788903       13207227  NM_001310134     PRAMEF25
17   chr1   12788903       13207227     NM_023014      PRAMEF2
18   chr1   12788903       13207227     NM_152290     C1orf158
19   chr1   12788903       13207227     NR_111945    PRAMEF36P
21  chr15   20626871       20912444  NM_001145004     GOLGA6L6
22  chr15   20626871       20912444     NR_027411     GOLGA8CP
23  chr15   20626871       20912444     NR_027992       NBEAP1
24  chr15   20626871       20912444     NR_036432      HERC2P3
25  chr20   14625025       14959561     NM_080676      MACROD2
26  chr20   14625025       14959561     NR_037841  MACROD2-AS1
28   chr3    4268735        4381925  NM_001243723       SETMAR
30   chr3   17304358       17709454  NM_001134381       TBC1D5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145348329      145769570  NM_001012758        NUDT17
1    chr1  145348329      145769570  NM_001039888      ANKRD34A
2    chr1  145348329      145769570  NM_001097612        GPR89A
3    chr1  145348329      145769570  NM_001184795        PEX11B
4    chr1  145348329      145769570  NM_001201325         PDZK1
5    chr1  145348329      145769570  NM_001277444         NBPF9
6    chr1  145348329      145769570  NM_001278267        NBPF20
7    chr1  145348329      145769570  NM_001280799       ANKRD35
8    chr1  145348329      145769570  NM_001302371        NBPF10
9    chr1  145348329      145769570  NM_001303040        ITGA10
10   chr1  145348329      145769570  NM_001303456        POLR3C
11   chr1  145348329      145769570  NM_001313972         TXNIP
13   chr1  145348329      145769570     NM_005105         RBM8A
14   chr1  145348329      145769570     NM_006099         PIAS3
17   chr1  145348329      145769570     NM_007053         CD160
18   chr1  145348329      145769570     NM_014455        RNF115
19   chr1  145348329      145769570     NM_032305       POLR3GL
20   chr1  145348329      145769570     NM_145277          HFE2
21   chr1  145348329      145769570     NM_153713         LIX1L
22   chr1  145348329      145769570     NR_002328        GNRHR2
26   chr1  145348329      145769570     NR_104217       NBPF25P
27   chr1  145348329      145769570     NR_106794       MIR6736
28   chr1  145348329      145769570     NR_125967  LOC101928979
29  chr11   20766793       20893804  NM_001288713         NELL1
30  chr11   55782352       55938880  NM_001001921        OR5AS1
31  chr11   55782352       55938880  NM_001003750         OR8I2
32  chr11   55782352       55938880  NM_001004058         OR8K5
33  chr11   55782352       55938880  NM_001004064         OR8J3
34  chr11   55782352       55938880  NM_001005200         OR8H2
35  chr11   55782352       55938880  NM_001005201         OR8H3
36  chr15   30240688       30365984  NM_001301025          TJP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   19683994       20040986  NM_001271850         TPTE2
1   chr13   19683994       20040986     NM_006001        TUBA3C
3   chr13   19683994       20040986     NR_027248     ANKRD26P3
4   chr13   19683994       20040986     NR_034026     LINC00421
7   chr13   19683994       20040986     NR_126054  LOC101928697
8   chr15   20949707       21109010  NM_001277303        POTEB2
9   chr15   20949707       21109010     NM_207355        POTEB3
10  chr15   20949707       21109010     NR_027992        NBEAP1
11  chr15   20949707       21109010     NR_036062     MIR3118-2
13  chr17   78221660       78332201  NM_001166349      SLC26A11
14  chr17   78221660       78332201  NM_001256071        RNF213
16  chr17   78221660       78332201     NR_029376  LOC100294362
17   chr5   96640857       97062314     NR_105028     LINC01340,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr21   30112058       30253781  NM_013240     N6AMT1
2   chr5  161106284      161557649  NM_000806     GABRA1
3   chr5  161106284      161557649  NM_000811     GABRA6
4   chr5  161106284      161557649  NM_000816     GABRG2
9   chr5  161106284      161557649  NR_126372  LINC01202,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr18   61808812       61939825     NR_027245     LINC00305
1   chr18   61808812       61939825     NR_033881     LOC284294
2   chr18   61808812       61939825     NR_033983     LINC01538
3    chr2  133552323      133755614     NM_207363        NCKAP5
4    chr2  133552323      133755614     NR_135572  LOC101928185
5    chr4  190348565      191112155  NM_001286820          FRG2
6    chr4  190348565      191112155     NM_004477          FRG1
7    chr4  190348565      191112155     NR_121644          DBET
8    chr4  190348565      191112155     NR_121679     LINC01262
9    chr4  190348565      191112155     NR_132380     LINC01596
10   chr4  190348565      191112155     NR_135513  LOC105379514,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  102434048      102534322     NR_110211         OLFM3
1   chr1  220043090      220211427     NM_004446          EPRS
2   chr1  220043090      220211427     NR_002753       RNU5F-1
3   chr1  220043090      220211427     NR_046437      SLC30A10
4  chr11   81823758       81930134     NR_120571     MIR4300HG
5  chr15   30219878       30321145  NM_001301025          TJP1
6   chr9   67140846       67306983     NR_002817        AQP7P1
7   chr9   67140846       67306983     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245018102      245121538     NM_004501        HNRNPU
1   chr13   63304944       64902952     NR_002171      OR7E156P
2   chr13   63304944       64902952     NR_047011     LINC00395
3   chr13   63304944       64902952     NR_047029     LINC00448
6   chr13   63304944       64902952     NR_126409     LINC00376
7   chr13   63304944       64902952     NR_130763  LOC102723968
8   chr20   14644993       14780311     NM_080676       MACROD2
9    chr9   41852425       49583586  NM_001012419     ANKRD20A3
11   chr9   41852425       49583586  NM_001012421     ANKRD20A2
13   chr9   41852425       49583586  NM_001145196     SPATA31A6
14   chr9   41852425       49583586  NM_001201380      CNTNAP3B
15   chr9   41852425       49583586     NM_199244       FOXD4L4
16   chr9   41852425       49583586     NR_003670        FGF7P3
17   chr9   41852425       49583586     NR_003674        FGF7P6
18   chr9   41852425       49583586     NR_015363         GLIDR
19   chr9   41852425       49583586     NR_026558        AQP7P3
20   chr9   41852425       49583586     NR_027421        FAM27C
21   chr9   41852425       49583586     NR_027472     LOC642929
22   chr9   41852425       49583586     NR_046175     LOC286297
23   chr9   41852425       49583586     NR_046203     LINC01189
24   chr9   41852425       49583586     NR_103714       FAM27E2
26   chr9   41852425       49583586     NR_111893     CNTNAP3P2
27   chr9   41852425       49583586     NR_121564  LOC101927827
28   chr9   41852425       49583586     NR_121570  LOC101928381
29   chr9   41852425       49583586     NR_121572      GXYLT1P3
31   chr9   41852425       49583586     NR_121606  LOC102723709
34   chr9   41852425       49583586     NR_126048  LOC102724238
36   chr9   41852425       49583586     NR_126049     LOC554249
38   chr9   41852425       49583586     NR_126050  LOC103908605
40   chr9   41852425       49583586     NR_126166       FAM74A7
41   chr9   41852425       49583586     NR_131213   XLOC_007697
42   chr9   41852425       49583586     NR_135136  LOC105376064
43   chr9   41852425       49583586     NR_135597  LOC101928195
44   chr9   41852425       49583586     NR_136299  LOC101929583
45   chr9   41852425       49583586     NR_136310  LOC105379252
47   chr9   41852425       49583586     NR_144466  LOC105379807,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr4   94166392       94291832  NM_001510     GRID2
1  chr9   41538484       41760265  NR_003528   ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   28138965       28423387     NM_000275       OCA2
2   chr15   28138965       28423387     NM_004667      HERC2
3    chr2   56606394       56727535  NM_001080433    CCDC85A
4    chr3     368166         799058  NM_001253387       CHL1
6    chr3     368166         799058     NR_110118  LINC01266
7    chr3     368166         799058     NR_110739   CHL1-AS1
8    chr7   16702984       16860595  NM_001159767       BZW2
9    chr7   16702984       16860595     NM_006408       AGR2
10   chr7   16702984       16860595     NM_014399    TSPAN13,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   12774486       12933895  NM_001013631  HNRNPCL1
1    chr1   12774486       12933895  NM_001080830  PRAMEF12
2    chr1   12774486       12933895  NM_001103170   AADACL3
3    chr1   12774486       12933895  NM_001146181  HNRNPCL3
4    chr1   12774486       12933895  NM_001146344  PRAMEF11
5    chr1   12774486       12933895  NM_001294139   PRAMEF1
6    chr1   12774486       12933895  NM_001302551  HNRNPCL4
8    chr1   12774486       12933895     NM_023014   PRAMEF2
9    chr1   12774486       12933895     NM_152290  C1orf158
10  chr19   57907321       58095939  NM_001023561    ZNF749
11  chr19   57907321       58095939  NM_001098491    ZNF419
12  chr19   57907321       58095939  NM_001144068    ZNF772
13  chr19   57907321       58095939  NM_001172773    ZNF548
14  chr19   57907321       58095939  NM_001199295    ZNF549
15  chr19   57907321       58095939  NM_001277090    ZNF550
16  chr19   57907321       58095939  NM_001304334    ZNF773
18  chr19   57907321       58095939  NM_001321145      ZIK1
19  chr19   57907321       58095939  NM_001330617     ZNF17
21  chr19   57907321       58095939     NM_017879    ZNF416
22  chr19   57907321       58095939     NM_020633     VN1R1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   26573353       26781267     NM_004802      OTOF
1  chr2   26573353       26781267     NM_033505   SELENOI
2  chr2   26573353       26781267     NM_145038      DRC1
4  chr3   72714505       73071987  NM_001080393    GXYLT2
5  chr3   72714505       73071987  NM_001318026    PPP4R2
8  chr3   72714505       73071987     NM_018130      SHQ1
9  chr9   39111654       39223804     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   21198566       21347346     NR_040094     LINC01193
1    chr3    4173629        4964785  NM_001164675         SUMF1
2    chr3    4173629        4964785  NM_001168272         ITPR1
3    chr3    4173629        4964785  NM_001243723        SETMAR
5    chr3    4173629        4964785     NR_004428          EGOT
6    chr3    4173629        4964785     NR_037903   BHLHE40-AS1
7    chr3    4173629        4964785     NR_108075     ITPR1-AS1
9    chr3   80785022       81113565     NR_132411     LOC728290
10   chr4     140139         297750  NM_001039127        ZNF718
11   chr4     140139         297750  NM_001137608        ZNF732
14   chr4     140139         297750     NR_027481       ZNF876P
17   chr7  110724927      112962263  NM_001099658         LRRN3
18   chr7  110724927      112962263  NM_001134468        LSMEM1
19   chr7  110724927      112962263  NM_001146266         GPR85
21   chr7  110724927      112962263  NM_001197079         IFRD1
23   chr7  110724927      112962263  NM_001244606        IMMP2L
24   chr7  110724927      112962263  NM_001287497       TMEM168
26   chr7  110724927      112962263     NM_014705         DOCK4
28   chr7  110724927      112962263     NM_021994        ZNF277
30   chr7  110724927      112962263     NM_152556          BMT2
32   chr7  110724927      112962263     NR_024412     LINC00998
33   chr7  110724927      112962263     NR_103806     DOCK4-AS1
34   chr7  110724927      112962263     NR_110158  LOC101928012
35   chr7  110724927      112962263     NR_110160  LOC100996249
36   chr7  110724927      112962263     NR_110162        HRAT17
38   chr9   41913315       42024765     NR_003670        FGF7P3
39   chr9   41913315       42024765     NR_015363         GLIDR
42   chr9   41913315       42024765     NR_126048  LOC102724238
43   chr9   41913315       42024765     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2     929057        1228915     NM_018968         SNTG2
1    chr2     929057        1228915     NR_136151  LOC101060391
2   chr22   32363028       32495904     NM_000343        SLC5A1
4    chr3     715229        1043772     NR_110118     LINC01266
5    chr6  119775380      119998179     NR_046100     LOC285762
6    chr6  119775380      119998179     NR_134600  LOC105377975
7    chr7   64074059       64357552  NM_001160183        ZNF138
8    chr7   64074059       64357552  NM_001282360        ZNF107
10   chr7   64074059       64357552     NR_077227  LOC100128885
12   chr7   64074059       64357552     NR_106898       MIR6839
13   chr7  110683863      110993711  NM_001099658         LRRN3
14   chr7  110683863      110993711  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11    4499829        4869088  NM_001004137    OR52M1
1   chr11    4499829        4869088  NM_001004751    OR51D1
2   chr11    4499829        4869088  NM_001004752    OR51F1
3   chr11    4499829        4869088  NM_001004753    OR51F2
4   chr11    4499829        4869088  NM_001005169    OR52I1
5   chr11    4499829        4869088  NM_001005170    OR52I2
6   chr11    4499829        4869088  NM_001005171    OR52K1
7   chr11    4499829        4869088  NM_001005177    OR52R1
8   chr11    4499829        4869088     NM_018073    TRIM68
9   chr11    4499829        4869088     NM_030774    OR51E2
10  chr11    4499829        4869088     NM_144663  C11orf40
11  chr11    4499829        4869088     NM_152430    OR51E1
12   chr3    4232595        4380415  NM_001243723    SETMAR,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   91942731       92046048  NM_001134419      CDC7
2  chr13   67270203       67382323     NM_020403     PCDH9
3  chr14   42063290       42413760  NM_001346175     LRFN5, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr4    9046565        9360574  NM_001242326  USP17L25
7   chr4    9046565        9360574  NM_001256852  USP17L10
8   chr4    9046565        9360574  NM_001256853  USP17L12
10  chr4    9046565        9360574  NM_001256854  USP17L11
13  chr4    9046565        9360574  NM_001256855  USP17L13
14  chr4    9046565        9360574  NM_001256857  USP17L17
15  chr4    9046565        9360574  NM_001256860  USP17L19
16  chr4    9046565        9360574  NM_001256861  USP17L20
17  chr4    9046565        9360574  NM_001256894  USP17L15
18  chr4    9046565        9360574     NR_046416  USP17L9P,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   54191422       54479689     NR_120641   LINC01468
2   chr14   42110793       42705197  NM_001346175       LRFN5
3   chr15   28615291       28816708     NR_033351     GOLGA8F
5   chr15   28615291       28816708     NR_033353     GOLGA8G
7   chr15   28615291       28816708     NR_039734   MIR4509-3
9    chr3    1313230        1422858  NM_001289081       CNTN6
10   chr3  155547867      156077331  NM_001190992     SLC33A1
11   chr3  155547867      156077331  NM_001308217      KCNAB1
14   chr3  155547867      156077331     NM_003875        GMPS
17   chr3  155547867      156077331     NR_046617  KCNAB1-AS2
18   chr4  169179988      169396121  NM_001012967      DDX60L
20   chr4  169179988      169396121     NM_017631       DDX60
21   chr7   29458862       29593487  NM_001293069        CHN2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145322774      145607317  NM_001012758        NUDT17
1    chr1  145322774      145607317  NM_001039888      ANKRD34A
2    chr1  145322774      145607317  NM_001184795        PEX11B
3    chr1  145322774      145607317  NM_001277444         NBPF9
4    chr1  145322774      145607317  NM_001278267        NBPF20
5    chr1  145322774      145607317  NM_001280799       ANKRD35
6    chr1  145322774      145607317  NM_001302371        NBPF10
7    chr1  145322774      145607317  NM_001303040        ITGA10
8    chr1  145322774      145607317  NM_001303456        POLR3C
9    chr1  145322774      145607317  NM_001313972         TXNIP
11   chr1  145322774      145607317     NM_005105         RBM8A
12   chr1  145322774      145607317     NM_006099         PIAS3
15   chr1  145322774      145607317     NM_032305       POLR3GL
16   chr1  145322774      145607317     NM_145277          HFE2
17   chr1  145322774      145607317     NM_153713         LIX1L
18   chr1  145322774      145607317     NR_002328        GNRHR2
22   chr1  145322774      145607317     NR_104217       NBPF25P
23   chr1  145322774      145607317     NR_106794       MIR6736
24   chr1  145322774      145607317     NR_125967  LOC101928979
25  chr10   67618202       67866819  NM_001127384        CTNNA3
27  chr12   27202546       27406744  NM_001080406      C12orf71
28  chr12   27202546       27406744     NM_015000        STK38L
29   chr4   93299016       93464790     NM_001510         GRID2
30   chr4   94017021       94195355     NM_001510         GRID2
31   chr4  121688267      121996138     NM_018699         PRDM5
32   chr4  121688267      121996138     NM_024574          NDNF,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   54191443       54379879     NR_120641     LINC01468
2   chr11   60269075       60474028  NM_001278320        MS4A13
3   chr11   60269075       60474028     NM_017716        MS4A12
4   chr11   60269075       60474028     NM_031457         MS4A8
5   chr11   60269075       60474028     NR_026946     LINC00301
6   chr15   20635602       20740691  NM_001145004      GOLGA6L6
7   chr15   20635602       20740691     NR_036432       HERC2P3
8    chr5   23821830       24010266     NR_131245       C5orf17
9    chr6   97431571       98447908  NM_001286251        KLHL32
13   chr6   97431571       98447908     NM_198468        MMS22L
14   chr6   97431571       98447908     NR_031679      MIR548H3
15   chr6   97431571       98447908     NR_110757  LOC101927314
16   chr9   80062298       81641297  NM_001330691         CEP78
18   chr9   80062298       81641297     NM_002072          GNAQ
19   chr9   80062298       81641297     NM_004297         GNA14
20   chr9   80062298       81641297     NM_021154         PSAT1
22   chr9   80062298       81641297     NR_121184     GNA14-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81448664       81612713  NM_001278495        NUTM2B
1   chr10   81448664       81612713     NR_029407     LOC642361
2   chr10   81448664       81612713     NR_120611    NUTM2B-AS1
5   chr15   97509268       97951864     NR_120324  LOC101927286
6    chr4  169225584      169327359  NM_001012967        DDX60L
8    chr4  169225584      169327359     NM_017631         DDX60
9    chr6  162555690      162760696     NM_013988         PARK2
10   chr6  162800786      162971797     NM_013988         PARK2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  117675229      121115164  NM_001079863           DBI
1   chr2  117675229      121115164  NM_001105198       TMEM177
4   chr2  117675229      121115164  NM_001184938       EPB41L5
6   chr2  117675229      121115164  NM_001271049       CFAP221
8   chr2  117675229      121115164  NM_001321332        INSIG2
10  chr2  117675229      121115164  NM_001322330       C2orf76
12  chr2  117675229      121115164     NM_001426           EN1
13  chr2  117675229      121115164     NM_002193         INHBB
14  chr2  117675229      121115164     NM_002830         PTPN4
15  chr2  117675229      121115164     NM_002881          RALB
16  chr2  117675229      121115164     NM_002980          SCTR
17  chr2  117675229      121115164     NM_006770         MARCO
18  chr2  117675229      121115164     NM_006773         DDX18
19  chr2  117675229      121115164     NM_018234        STEAP3
20  chr2  117675229      121115164     NM_019044        CCDC93
22  chr2  117675229      121115164     NM_024121      TMEM185B
23  chr2  117675229      121115164     NM_182528         C1QL2
24  chr2  117675229      121115164     NM_183240        TMEM37
25  chr2  117675229      121115164     NR_046721    STEAP3-AS1
27  chr2  117675229      121115164     NR_110272  LOC101927709,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   86676683       86872950  NM_001168724       TMEM135
1  chr11   86676683       86872950     NR_038905  LOC100506368
2   chr7    2725053        3055693  NM_001282440         GNA12
4   chr7    2725053        3055693  NM_001284355          AMZ1
7   chr7    2725053        3055693  NM_001324281        CARD11,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3   26002005       27320517  NM_001304384     NEK10
1  chr3   26002005       27320517  NM_001317808    LRRC3B,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2  233051861      233164162  NM_001257281    DIS3L2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89055790       90804311  NM_001105522      TRIM49D2
2   chr11   89055790       90804311  NM_001136486        TRIM64
3   chr11   89055790       90804311  NM_001143837          NOX4
4   chr11   89055790       90804311  NM_001143975        UBTFL1
5   chr11   89055790       90804311  NM_001144073       CHORDC1
6   chr11   89055790       90804311  NM_001164397       TRIM64B
7   chr11   89055790       90804311  NM_001195234       TRIM49C
8   chr11   89055790       90804311  NM_001206627      TRIM49D1
10  chr11   89055790       90804311  NM_001271942        TRIM77
15  chr11   89055790       90804311     NM_005467       NAALAD2
16  chr11   89055790       90804311     NM_020358        TRIM49
17  chr11   89055790       90804311     NM_153696        FOLH1B
18  chr11   89055790       90804311     NR_028346      TRIM53AP
20  chr11   89055790       90804311     NR_031663       MIR1261
21  chr11   89055790       90804311     NR_039711       MIR4490
22  chr11   89055790       90804311     NR_104190      DISC1FP1
24  chr16    6539376        6652675  NM_001308117        RBFOX1
26  chr18   63457439       63595122  NM_001317214          CDH7
29   chr9   41851871       42094421     NR_003670        FGF7P3
30   chr9   41851871       42094421     NR_015363         GLIDR
33   chr9   41851871       42094421     NR_126048  LOC102724238
34   chr9   41851871       42094421     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   97169093       97411220  NM_001115016        KANSL3
1   chr2   97169093       97411220  NM_001285485        NEURL3
2   chr2   97169093       97411220  NM_001293083        FER1L5
3   chr2   97169093       97411220  NM_001319085        ARID5A
5   chr2   97169093       97411220  NM_001322354        LMAN2L
9   chr2   97169093       97411220     NR_135564  LOC105373496
10  chr4    3859932        4130167     NR_130741       FAM86EP
11  chr4   80187632       80315175     NM_032693         NAA11
12  chr4   80187632       80315175     NR_038342     LINC01088
13  chr6   92017548       92632041     NR_039786       MIR4643
14  chr6   92017548       92632041     NR_104154         CASC6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245041246      245373598  NM_001143943        EFCAB2
2    chr1  245041246      245373598     NM_018012        KIF26B
4    chr1  245041246      245373598     NR_111907  LOC101928068
5   chr14   19899328       20024051  NM_001145442         POTEM
6   chr14   19899328       20024051     NR_073459       BMS1P18
7   chr14   19899328       20024051     NR_110505  LOC100508046
8   chr14   19899328       20024051     NR_110526       DUXAP10
9   chr14   19899328       20024051     NR_122111     LINC01296
11  chr14   19899328       20024051     NR_133911       BMS1P22
12  chr17    5508413        5769658     NR_040000     LOC339166
13   chr9   38988995       40284273  NM_001085452     SPATA31A1
15   chr9   38988995       40284273     NM_033655       CNTNAP3
16   chr9   38988995       40284273     NR_003528       ZNF658B
17   chr9   38988995       40284273     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr12   71497147       71610504     NM_004616     TSPAN8
1  chr16    8598645        8711528  NM_001146336    TMEM114
4   chr3    1427388        1536455  NM_001289081      CNTN6
5   chr7    3398730        3531558     NM_152744       SDK1
6   chr9   30251174       30506241     NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr16   78762149       79114264     NM_016373        WWOX
1   chr17     365257         467500  NM_001128159       VPS53
3    chr7  109501818      109630792     NR_003024     EIF3IP1
4    chr7  117561563      118066917     NM_016200        LSM8
5    chr7  117561563      118066917     NM_019644      ANKRD7
6    chr8    7059694        7172106     NR_003668  DEFB109P1B
7    chr8    7059694        7172106     NR_027000   LINC00965
10   chr8    7059694        7172106     NR_027423      FAM66B,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  102382303      103634135     NM_001854       COL11A1
1   chr1  102382303      103634135     NR_110211         OLFM3
2   chr1  162835109      164427739  NM_001102445          RGS4
5   chr1  162835109      164427739  NM_001254748          RGS5
8   chr1  162835109      164427739     NM_031423          NUF2
9   chr1  162835109      164427739     NM_178550       CCDC190
11  chr1  162835109      164427739     NR_104294  LOC100422212
12  chr1  162835109      164427739     NR_110699  LOC101928404
13  chr2   51174493       51471840  NM_001330079         NRXN1
16  chr2   51174493       51471840     NR_135237     LOC730100, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr13   93146947       93290985     NM_004466          GPC5
1   chr4   81820055       81958983     NM_001201          BMP3
2   chr4   81820055       81958983  NM_001206997       C4orf22
3   chr7   64076856       64208047  NM_001282360        ZNF107
4   chr7   64076856       64208047     NR_077227  LOC100128885
6   chr7   64076856       64208047     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   67916699       68044074  NM_001127384     CTNNA3
2   chr8   57912801       58145302     NR_038235  LINC01606,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   20668854       21270799  NM_001145004   GOLGA6L6
1  chr15   20668854       21270799  NM_001277303     POTEB2
2  chr15   20668854       21270799     NM_207355     POTEB3
3  chr15   20668854       21270799     NR_027411   GOLGA8CP
4  chr15   20668854       21270799     NR_027992     NBEAP1
5  chr15   20668854       21270799     NR_028506      NF1P2
6  chr15   20668854       21270799     NR_036062  MIR3118-2
7  chr15   20668854       21270799     NR_036432    HERC2P3
8  chr15   20668854       21270799     NR_040094  LINC01193
9  chr15   20668854       21270799     NR_049895  MIR5701-2, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   95795511       96113942  NM_001160100        CLDN10
1   chr13   95795511       96113942  NM_001301829         ABCC4
3   chr17   14140168       14729246     NM_006041      HS3ST3B1
4   chr17   14140168       14729246     NR_026880      MGC12916
5    chr2   51224097       51713803  NM_001330079         NRXN1
8    chr2   51224097       51713803     NR_135237     LOC730100
9    chr9   67165727       67316363     NR_002817        AQP7P1
10   chr9   67165727       67316363     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   56538326       56641649  NM_001142770     PCDH15
3  chr13   63112289       63283078     NR_047029  LINC00448,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   46953525       47282068  NM_001164213      LRCH1
1  chr13   46953525       47282068  NM_001286761     RUBCNL
4  chr13   46953525       47282068     NR_120426  LINC01198
5   chr2  193504221      193674577     NR_002769     PCGEM1
6  chr20   14681763       14862598     NM_080676    MACROD2,    chrom  cnv_start  cnv_terminate       tx_name          gene_name
0  chr22   17101965       17271422     NM_175878               XKR3
1  chr22   17101965       17271422     NR_001591             TPTEP1
2  chr22   17101965       17271422     NR_040115  ANKRD62P1-PARP4P3
3  chr22   17101965       17271422     NR_134584       LOC101929350
4   chr4   69237721       69353884     NM_014058          TMPRSS11E
5   chr5   20426218       20685372  NM_001291956              CDH18,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   97219364       97386172  NM_001115016    KANSL3
1  chr2   97219364       97386172  NM_001293083    FER1L5
2  chr2   97219364       97386172  NM_001322354    LMAN2L
5  chr3   60213360       61439475  NM_001320899      FHIT
6  chr3   60213360       61439475     NR_128708  MIR548BB
7  chr7    3275845        3390097     NM_152744      SDK1
8  chr7   64198863       64298940  NM_001160183    ZNF138,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   60255750       60476506  NM_001278320      MS4A13
1   chr11   60255750       60476506     NM_017716      MS4A12
2   chr11   60255750       60476506     NM_031457       MS4A8
3   chr11   60255750       60476506     NR_026946   LINC00301
4    chr2   95505568       95771012  NM_001321995       MRPS5
5    chr2   95505568       95771012     NM_022439         MAL
7    chr2   95505568       95771012     NM_144705       TEKT4
8    chr2   95505568       95771012     NR_003366  ANKRD20A8P
9    chr2   95505568       95771012     NR_037597   LOC442028
10   chr5   17603024       17842487     NR_134286   LOC646241
12   chr7  110601409      110722651  NM_001244606      IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr5     131553         240785  NM_001080478   LRRC14B
1  chr5     131553         240785     NM_004168      SDHA
2  chr5     131553         240785     NM_052909  PLEKHG4B
3  chr5     131553         240785     NM_145265   CCDC127
4  chr6  120202918      120407924     NR_036098   MIR3144
5  chr6  162783672      162928895     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21498671       21707756  NM_001077180        METTL9
1   chr16   21498671       21707756  NM_001161683          OTOA
3   chr16   21498671       21707756     NM_005849         IGSF6
5   chr16   21498671       21707756     NR_002594      SLC7A5P2
6   chr16   21498671       21707756     NR_027155        SMG1P3
7   chr16   21498671       21707756     NR_049833     MIR3680-2
8   chr16   21498671       21707756     NR_110930  LOC101927814
9    chr8   15954703       17253225  NM_001145152        VPS37A
10   chr8   15954703       17253225  NM_001322087         CNOT7
14   chr8   15954703       17253225     NM_002445          MSR1
15   chr8   15954703       17253225     NM_004686         MTMR7
17   chr8   15954703       17253225     NM_016353        ZDHHC2
18   chr8   15954703       17253225     NM_019851         FGF20
20   chr8   15954703       17253225     NM_181723         MICU3
21   chr9   15006258       16527687  NM_001039697        SNAPC3
22   chr9   15006258       16527687  NM_001128217         PSIP1
23   chr9   15006258       16527687  NM_001168339        TTC39B
25   chr9   15006258       16527687  NM_001271829       C9orf92
27   chr9   15006258       16527687     NM_017637          BNC2
29   chr9   15006258       16527687     NM_173550       CCDC171
30   chr9   15006258       16527687     NR_003920     LOC389705,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67866220       68043950  NM_001127384    CTNNA3
2    chr4  169247016      170787807  NM_001012967    DDX60L
3    chr4  169247016      170787807  NM_001166108     PALLD
6    chr4  169247016      170787807  NM_001243372     CLCN3
9    chr4  169247016      170787807     NM_012224      NEK1
10   chr4  169247016      170787807     NM_017867      HPF1
11   chr4  169247016      170787807     NM_020870    SH3RF1
12   chr4  169247016      170787807     NM_032783      CBR4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67316990       67421276     NM_000852         GSTP1
1   chr11   67316990       67421276  NM_001166102        NDUFV1
2   chr11   67316990       67421276  NM_001243750         NUDT8
3   chr11   67316990       67421276     NM_005995         TBX10
4   chr11   67316990       67421276     NM_080658          ACY3
6   chr11   67316990       67421276     NR_033791        DOC2GP
7   chr11   67316990       67421276     NR_130935      C11orf72
8   chr12   20882201       21395545  NM_001009562       SLCO1B7
9   chr12   20882201       21395545  NM_001145946       SLCO1C1
10  chr12   20882201       21395545     NM_006446       SLCO1B1
12  chr12   20882201       21395545     NM_019844       SLCO1B3
13  chr15   28119777       28291092     NM_000275          OCA2
15   chr3  193091745      193230643     NM_032279       ATP13A4
16   chr3  193091745      193230643     NM_198505       ATP13A5
17   chr4     481352         799783     NM_000283         PDE6B
19   chr4     481352         799783  NM_001289053          PIGG
20   chr4     481352         799783  NM_001294341         MFSD7
21   chr4     481352         799783  NM_001317836         PCGF3
22   chr4     481352         799783     NM_002477          MYL5
23   chr4     481352         799783     NM_006651         CPLX1
24   chr4     481352         799783     NM_007100         ATP5I
25   chr4     481352         799783     NM_133474        ZNF721
26   chr4     481352         799783     NR_036511  LOC100129917
29   chr6  162613146      162722137     NM_013988         PARK2,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr1  181402440      181674697  NM_000721   CACNA1E
1  chr7   88241399       88578295  NM_152706   C7orf62
2  chr7   88241399       88578295  NM_181646   ZNF804B,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  243526714      243671274  NM_001206729      AKT3
2  chr1  243526714      243671274     NM_006642   SDCCAG8
4  chr6  162606352      162735489     NM_013988     PARK2
5  chr7  110672813      111077608  NM_001099658     LRRN3
6  chr7  110672813      111077608  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   88935677       89039187  NM_001099338       NUTM2A
1   chr10   88935677       89039187  NM_001330112       FAM35A
3   chr10   88935677       89039187     NR_024397   NUTM2A-AS1
4   chr11   64932198       65045994  NM_001004326     SLC22A20
5   chr11   64932198       65045994  NM_001008778        SPDYC
6   chr11   64932198       65045994  NM_001198868        CAPN1
8   chr11   64932198       65045994     NM_002689        POLA2
11  chr14   45634345       45925203  NM_001308133        FANCM
13  chr14   45634345       45925203     NM_018353     MIS18BP1
14  chr18     561499         713562  NM_001012716       TYMSOS
15  chr18     561499         713562     NM_001071         TYMS
16  chr18     561499         713562  NM_001126123       ENOSF1
17  chr18     561499         713562  NM_001289036        CLUL1
21  chr18     561499         713562     NM_004066        CETN1
24   chr2   75841874       76159714  NM_001201334        GCFC2
27   chr2   75841874       76159714     NM_014763       MRPL19
28  chr20   14548786       14709156     NM_080676      MACROD2
29  chr20   14548786       14709156     NR_104193  MACROD2-IT1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr4    9008339        9240390  NM_001256852      USP17L10
1   chr4    9008339        9240390  NM_001256853      USP17L12
2   chr4    9008339        9240390  NM_001256854      USP17L11
3   chr4    9008339        9240390  NM_001256855      USP17L13
4   chr4    9008339        9240390  NM_001256894      USP17L15
5   chr5  127810771      127912386     NM_001999          FBN2
6   chr7   64051044       64413197  NM_001160183        ZNF138
7   chr7   64051044       64413197  NM_001282360        ZNF107
8   chr7   64051044       64413197     NM_021148        ZNF273
10  chr7   64051044       64413197     NR_077227  LOC100128885
12  chr7   64051044       64413197     NR_106898       MIR6839
13  chr9   41445693       41627777  NM_001113541     SPATA31A5
14  chr9   41445693       41627777     NM_015667     SPATA31A7
15  chr9   41445693       41627777     NR_003528       ZNF658B
16  chr9   41445693       41627777     NR_026803       FAM74A1
17  chr9  116376614      116764794  NM_001318041        ZNF618,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr12   85668787       86069921  NM_006982      ALX1,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr5  120552147      120767473  NR_104999  LOC102467226,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   63156568       63301772  NR_047029  LINC00448
1   chr7   11839893       12028073  NM_015204     THSD7A,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr13   19708838       19852840     NM_006001        TUBA3C
1  chr13   19708838       19852840     NR_027248     ANKRD26P3
2  chr13   19708838       19852840     NR_126054  LOC101928697
3  chr16    6758141        6922106  NM_001142334        RBFOX1
6  chr16   29556566       29657648     NR_049833     MIR3680-2
7  chr16   29556566       29657648     NR_135305        SMG1P2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   19945571       20152545     NM_000754          COMT
3   chr22   19945571       20152545  NM_001190326         DGCR8
4   chr22   19945571       20152545  NM_001243537       CCDC188
5   chr22   19945571       20152545  NM_001278639        RANBP1
8   chr22   19945571       20152545  NM_001283116        TANGO2
11  chr22   19945571       20152545     NM_001670         ARVCF
13  chr22   19945571       20152545     NM_013373        ZDHHC8
14  chr22   19945571       20152545     NM_022727        TRMT2A
15  chr22   19945571       20152545     NR_029706        MIR185
16  chr22   19945571       20152545     NR_031706       MIR1306
17  chr22   19945571       20152545     NR_037412       MIR3618
18  chr22   19945571       20152545     NR_039918       MIR4761
19  chr22   19945571       20152545     NR_106874       MIR6816
20   chr7   75889919       76514480  NM_001102594          DTX2
22   chr7   75889919       76514480  NM_001110199         SRRM3
23   chr7   75889919       76514480  NM_001110354           ZP3
24   chr7   75889919       76514480     NM_001540         HSPB1
26   chr7   75889919       76514480     NM_012479         YWHAG
27   chr7   75889919       76514480     NM_030570         UPK3B
28   chr7   75889919       76514480     NM_080744         SSC4D
29   chr7   75889919       76514480     NM_152992        POMZP3
30   chr7   75889919       76514480     NR_003262        FDPSP2
31   chr7   75889919       76514480     NR_029411  LOC100133091,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr18   56094894       56581303  NM_001289967  LOC101927322
1   chr18   56094894       56581303  NM_001318727        ZNF532
3   chr18   56094894       56581303     NM_006785         MALT1
5   chr18   56094894       56581303     NM_052947         ALPK2
6   chr18   56094894       56581303     NR_029667        MIR122
7   chr18   56094894       56581303     NR_039899       MIR3591
8   chr18   56094894       56581303     NR_132963      SNORA108
9    chr2   47054543       47488827  NM_001163561       C2orf61
10   chr2   47054543       47488827  NM_001171506         MCFD2
13   chr2   47054543       47488827  NM_001288951         TTC7A
15   chr2   47054543       47488827  NM_001305624         CALM2
19   chr2   47054543       47488827     NR_024452     LINC01119
20   chr2   47054543       47488827     NR_110207  LOC101927043
22   chr2   63178060       63394056  NM_001042692         WDPCP
23   chr2   63178060       63394056  NM_001142614         EHBP1
25   chr2   63178060       63394056  NM_001199770          OTX1
28   chr2   63178060       63394056     NR_027069  LOC100132215
30   chr2   63178060       63394056     NR_036635       DBIL5P2
32   chr2  242459045      242573617  NM_001164356         THAP4
34   chr2  242459045      242573617     NM_032515           BOK
35   chr2  242459045      242573617     NR_033346       BOK-AS1
36   chr9   28575565       28706047  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   86112762       86240473     NM_017953        ZNHIT6
1    chr1   86112762       86240473     NM_152890       COL24A1
2   chr17   63403147       63509391     NR_131984        CRAT40
3    chr2   97512318       97637041  NM_001122646       FAM178B
5    chr2   97512318       97637041     NM_016466       ANKRD39
7    chr2   97512318       97637041     NM_017789        SEMA4C
8    chr2   97512318       97637041     NR_110209  LOC101927053
9    chr3  156041277      156174436  NM_001308217        KCNAB1
14   chr3  156041277      156174436     NR_046618    KCNAB1-AS1
15   chr6  131053238      131156070  NM_001195597         SMLR1
16   chr9   28213418       28626016  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67348452       68273677     NM_000695       ALDH3B2
1   chr11   67348452       68273677     NM_000852         GSTP1
3   chr11   67348452       68273677  NM_001161473       ALDH3B1
4   chr11   67348452       68273677  NM_001164164        PPP6R3
5   chr11   67348452       68273677  NM_001166102        NDUFV1
6   chr11   67348452       68273677  NM_001243750         NUDT8
8   chr11   67348452       68273677  NM_001300907         KMT5B
11  chr11   67348452       68273677     NM_002335          LRP5
12  chr11   67348452       68273677     NM_002496        NDUFS8
13  chr11   67348452       68273677     NM_005995         TBX10
14  chr11   67348452       68273677     NM_006019        TCIRG1
17  chr11   67348452       68273677     NM_022338      C11orf24
18  chr11   67348452       68273677     NM_030930       UNC93B1
19  chr11   67348452       68273677     NM_080658          ACY3
21  chr11   67348452       68273677     NM_212469          CHKA
22  chr11   67348452       68273677     NR_024249      FAM86C2P
23  chr11   67348452       68273677     NR_033791        DOC2GP
24  chr11   67348452       68273677     NR_039840       MIR4691
25  chr11   67348452       68273677     NR_106811       MIR6753
26  chr11   67348452       68273677     NR_106963       MIR7113
27  chr11   67348452       68273677     NR_130935      C11orf72
28  chr14   21900520       22105526  NM_001005465        OR10G3
29  chr14   21900520       22105526  NM_001005466        OR10G2
30  chr14   21900520       22105526  NM_001163380         RAB2B
31  chr14   21900520       22105526  NM_001303523          TOX4
32  chr14   21900520       22105526     NM_019852        METTL3
33  chr14   21900520       22105526     NM_020920          CHD8
35  chr14   21900520       22105526     NR_111966         SALL2
37  chr14   42095427       42874453  NM_001346175         LRFN5
38  chr14   78361220       78505780  NM_001142545         ADCK1
39  chr15   22162653       22459158  NM_001004719         OR4M2
40  chr15   22162653       22459158  NM_001005241         OR4N4
41  chr15   22162653       22459158     NR_015416     LOC727924
42  chr15   22162653       22459158     NR_028067        OR4N3P
43  chr15   22162653       22459158     NR_110480  LOC101927079
45  chr15   22162653       22459158     NR_135694   IGHV1OR15-1
46  chr17   78127354       78360375     NM_000199          SGSH
47  chr17   78127354       78360375  NM_001166349      SLC26A11
48  chr17   78127354       78360375  NM_001256071        RNF213
49  chr17   78127354       78360375  NM_001257970        CARD14
53  chr17   78127354       78360375     NR_029376  LOC100294362,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   19649365       19811354  NM_001142308    MALRD1
1   chr7  110660399      110843588  NM_001099658     LRRN3
2   chr7  110660399      110843588  NM_001244606    IMMP2L
4   chr9     283734         569527  NM_001190458     DOCK8
5   chr9     283734         569527  NM_001256876     KANK1
8   chr9   28506423       28684153  NM_001258282    LINGO2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   71435070       71966520  NM_001277227      LGR5
1  chr12   71435070       71966520     NM_004616    TSPAN8
2   chr3   85389638       85503218  NM_001167675     CADM2
3   chr3   85389638       85503218     NR_049870   MIR5688
4   chr4  118855481      118981447     NM_004784     NDST3
5   chr6   94332584       94500090     NR_015362      TSG1
6   chr7   75359943       75516798  NM_001040457    RHBDD2
7   chr7   75359943       75516798  NM_001243198      HIP1
8   chr7   75359943       75516798     NM_002991     CCL24
9   chr7   75359943       75516798     NM_006072     CCL26,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   48310334       48628174  NM_001004702       OR4C3
1   chr11   48310334       48628174  NM_001004725       OR4S1
2   chr11   48310334       48628174  NM_001005512      OR4A47
3   chr11   48310334       48628174  NM_001005513      OR4C45
4   chr11  132198880      132384731  NM_001012393       OPCML
5   chr11  132198880      132384731  NM_001048209         NTM
9   chr17   48356835       48522940  NM_001166131        EME1
10  chr17   48356835       48522940  NM_001168215      TMEM92
11  chr17   48356835       48522940  NM_001288968       ACSF2
12  chr17   48356835       48522940     NM_016504      MRPL27
13  chr17   48356835       48522940     NM_018509      LRRC59
14  chr17   48356835       48522940     NM_022167       XYLT2
16  chr17   48356835       48522940     NR_125805  TMEM92-AS1
17   chr5  120015538      120243961  NM_001300783       PRR16
20   chr7   88230972       88570408     NM_152706     C7orf62
21   chr7   88230972       88570408     NM_181646     ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245013675      245136838  NM_001143943        EFCAB2
2    chr1  245013675      245136838     NM_004501        HNRNPU
4    chr1  245013675      245136838     NR_111907  LOC101928068
5    chr1  245013675      245136838     NR_132782      SNORA100
6   chr21   28144867       28431844     NM_006988       ADAMTS1
7   chr21   28144867       28431844     NM_007038       ADAMTS5
8   chr21   28144867       28431844     NR_039916       MIR4759
9    chr7   64085832       64350102  NM_001160183        ZNF138
10   chr7   64085832       64350102  NM_001282360        ZNF107
13   chr7   64085832       64350102     NR_106898       MIR6839
14   chr7  110682684      111175470  NM_001099658         LRRN3
15   chr7  110682684      111175470  NM_001244606        IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143647960      143887491  NM_001123068       PPIAL4G
1  chr1  143647960      143887491     NR_104014     LINC01138
2  chr1  143647960      143887491     NR_106967       MIR6077
3  chr1  143647960      143887491     NR_111930  LOC100132057
4  chr6  162636244      162795853     NM_013988         PARK2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   67995565       68196087  NM_001127384        CTNNA3
2  chr13   63308638       63442815     NR_047029     LINC00448
5  chr16   18316074       18452583  NM_001282511        NPIPA8
6  chr16   18316074       18452583     NR_103772  LOC100288162
7  chr16   18316074       18452583     NR_106971     MIR6511A4
8   chr7  125777142      126442963  NM_001127323          GRM8,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  241673621      241892027     NM_000143           FH
1    chr1  241673621      241892027     NM_001821         CHML
2    chr1  241673621      241892027     NM_003679          KMO
3    chr1  241673621      241892027     NM_014322         OPN3
4    chr1  241673621      241892027     NM_144625        WDR64
5   chr14   78321431       78637607  NM_001142545        ADCK1
6   chr14   78321431       78637607     NR_073547        NRXN3
7   chr15   85604132       85858230  NM_001243137        PDE8A
8   chr15   85604132       85858230  NM_001310153     GOLGA6L3
10  chr15   85604132       85858230     NR_049748    LOC642423
11  chr20   14884625       15076579     NM_080676      MACROD2
12  chr20   14884625       15076579     NR_037841  MACROD2-AS1
14   chr6  162393627      162525628     NM_013988        PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   80801534       81047147  NM_001318536      SPRY2
3   chr18    1723662        3213740  NM_001308401     METTL4
4   chr18    1723662        3213740     NM_003803      MYOM1
5   chr18    1723662        3213740     NM_006101      NDC80
6   chr18    1723662        3213740     NM_014646      LPIN2
7   chr18    1723662        3213740     NM_015295     SMCHD1
8   chr18    1723662        3213740     NM_032048    EMILIN2
9   chr18    1723662        3213740     NR_026659  LOC727896
10  chr18    1723662        3213740     NR_033754     CBX3P2
11   chr9   41514297       41770470     NR_003528    ZNF658B
12   chr9   41514297       41770470     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245024213      245296652  NM_001143943        EFCAB2
2    chr1  245024213      245296652     NM_004501        HNRNPU
4    chr1  245024213      245296652     NR_111907  LOC101928068
5   chr11     666909         795006  NM_001042463        TMEM80
6   chr11     666909         795006  NM_001191060      SLC25A22
9   chr11     666909         795006  NM_001318824         PDDC1
10  chr11     666909         795006     NM_006755        TALDO1
11  chr11     666909         795006     NM_016564         CEND1
12  chr11     666909         795006     NM_021008         DEAF1
13  chr11     666909         795006     NM_022772        EPS8L2
15  chr11     666909         795006     NR_126342     LOC171391
16  chr11   67259644       67449796     NM_000695       ALDH3B2
17  chr11   67259644       67449796     NM_000852         GSTP1
19  chr11   67259644       67449796  NM_001166102        NDUFV1
20  chr11   67259644       67449796  NM_001243750         NUDT8
21  chr11   67259644       67449796  NM_001318496         CABP2
22  chr11   67259644       67449796     NM_004910       PITPNM1
23  chr11   67259644       67449796     NM_005851       CDK2AP2
24  chr11   67259644       67449796     NM_005995         TBX10
25  chr11   67259644       67449796     NM_080658          ACY3
27  chr11   67259644       67449796     NR_033791        DOC2GP
29  chr11   67259644       67449796     NR_130935      C11orf72
30   chr7    3380312        3522290     NM_152744          SDK1
31   chr7  124989329      125393360     NR_110188  LOC101928283
32   chr8   83503208       86053128  NM_001100391         RALYL
36   chr8   83503208       86053128     NM_033402        LRRCC1
37   chr8   83503208       86053128     NR_122034     LINC01419
38   chr8   83503208       86053128     NR_134295  LOC101927141,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   16271267       16377186  NM_001004067      NOMO3
1   chr16   16271267       16377186  NM_001079528      ABCC6
3   chr17   14138349       14316491  NM_001007530     CDRT15
4   chr17   14138349       14316491     NM_006041   HS3ST3B1
5   chr17   14138349       14316491     NR_026880   MGC12916
6    chr4   69224055       69352730     NM_014058  TMPRSS11E
7    chr4   94211538       94408513     NM_001510      GRID2
8    chr5   12395692       12658648     NR_033383  LINC01194
9    chr7  110640455      110762628  NM_001099658      LRRN3
10   chr7  110640455      110762628  NM_001244606     IMMP2L
12   chr9   38963158       39155730     NM_033655    CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   20796887       20908912  NM_001288713     NELL1
1   chr9  116775499      116883675  NM_001318041    ZNF618
2   chr9  116775499      116883675     NM_001633      AMBP
3   chr9  116775499      116883675     NM_138424     KIF12,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr10  100623907      100768614  NM_001166244              HPSE2
1   chr10  100623907      100768614     NR_106762            MIR6507
2   chr15   30254824       31218014  NM_001039841          ARHGAP11B
3   chr15   30254824       31218014  NM_001146094               FAN1
5   chr15   30254824       31218014  NM_001282472            GOLGA8J
6   chr15   30254824       31218014  NM_001282484            GOLGA8R
7   chr15   30254824       31218014  NM_001282490            GOLGA8H
8   chr15   30254824       31218014  NM_001301025               TJP1
10  chr15   30254824       31218014     NM_139320           CHRFAM7A
11  chr15   30254824       31218014     NR_026771       DKFZP434L187
12  chr15   30254824       31218014     NR_026858             ULK4P1
13  chr15   30254824       31218014     NR_026859             ULK4P3
14  chr15   30254824       31218014     NR_033933            GOLGA8T
15  chr15   30254824       31218014     NR_038253       LOC100288637
17  chr15   30254824       31218014     NR_072991           HERC2P10
18   chr2   75878445       75983418  NM_001201334              GCFC2
21   chr2   75878445       75983418     NM_014763             MRPL19
22  chr22   17131137       17294646     NM_175878               XKR3
23  chr22   17131137       17294646     NR_040115  ANKRD62P1-PARP4P3
24  chr22   17131137       17294646     NR_134584       LOC101929350
25   chr3  155623274      155843221  NM_001308217             KCNAB1
26   chr3  155623274      155843221     NM_003875               GMPS
28   chr6  162877749      162978023     NM_013988              PARK2
29   chr7    6653867        6840752  NM_001099697           RSPH10B2
30   chr7    6653867        6840752  NM_001278559             ZNF316
31   chr7    6653867        6840752     NM_006956              ZNF12
32   chr7    6653867        6840752     NM_017560             ZNF853
33   chr7    6653867        6840752     NM_198097              CCZ1B
34   chr7    6653867        6840752     NR_002217             PMS2CL
35   chr7   64079363       64445387  NM_001160183             ZNF138
36   chr7   64079363       64445387  NM_001282360             ZNF107
37   chr7   64079363       64445387     NM_015852             ZNF117
38   chr7   64079363       64445387     NM_021148             ZNF273
41   chr7   64079363       64445387     NR_106898            MIR6839
42   chr9   41800775       42151245     NR_003670             FGF7P3
43   chr9   41800775       42151245     NR_015363              GLIDR
46   chr9   41800775       42151245     NR_126048       LOC102724238
47   chr9   41800775       42151245     NR_126049          LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244990845      245169179  NM_001143943        EFCAB2
2    chr1  244990845      245169179  NM_001312871         COX20
4    chr1  244990845      245169179     NM_004501        HNRNPU
7    chr1  244990845      245169179     NR_111907  LOC101928068
8    chr1  244990845      245169179     NR_132782      SNORA100
9   chr13   63336794       63467440     NR_047029     LINC00448
12   chr5   26965686       27084059     NM_016279          CDH9
13   chr7   64049790       64579254  NM_001007253        ERV3-1
14   chr7   64049790       64579254  NM_001160183        ZNF138
15   chr7   64049790       64579254  NM_001282360        ZNF107
16   chr7   64049790       64579254     NM_015852        ZNF117
17   chr7   64049790       64579254     NM_021148        ZNF273
18   chr7   64049790       64579254     NR_033416        CCT6P3
20   chr7   64049790       64579254     NR_077227  LOC100128885
22   chr7   64049790       64579254     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48260251       48369334  NM_001004702         OR4C3
1   chr11   48260251       48369334  NM_001004725         OR4S1
2   chr11   48260251       48369334  NM_001004726         OR4X1
3   chr11   48260251       48369334  NM_001004727         OR4X2
4   chr11   48260251       48369334  NM_001005513        OR4C45
5   chr12   80989178       81374014  NM_001145026         PTPRQ
6   chr12   80989178       81374014  NM_001324423         LIN7A
7   chr12   80989178       81374014     NM_002469          MYF6
8   chr12   80989178       81374014     NM_005593          MYF5
9   chr12   80989178       81374014     NR_030348        MIR617
10  chr12   80989178       81374014     NR_030349        MIR618
11  chr12   80989178       81374014     NR_120468     LINC01490
12  chr14   79550381       79701908     NM_004796         NRXN3
14  chr14   79550381       79701908     NR_135159  LOC105370586
15  chr15   78353591       78490224  NM_001101404         SH2D7
16  chr15   78353591       78490224  NM_001199377        ACSBG1
17  chr15   78353591       78490224  NM_001301224          CIB2
18  chr15   78353591       78490224     NM_005530         IDH3A
19  chr15   78353591       78490224     NM_015079       TBC1D2B
20   chr6  162807506      162959912     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37435019       37865974     NM_052997      ANKRD30A
1   chr10   37435019       37865974     NR_104061     LINC00993
2    chr3  197230971      197524076  NM_001011537        FYTTD1
3    chr3  197230971      197524076  NM_001145642         RUBCN
6    chr3  197230971      197524076     NM_032773         LRCH3
7    chr3  197230971      197524076     NM_203314          BDH1
9    chr3  197230971      197524076     NR_003266     LOC220729
11   chr3  197230971      197524076     NR_030627        MIR922
12   chr9   41902605       42080436     NR_003670        FGF7P3
13   chr9   41902605       42080436     NR_015363         GLIDR
16   chr9   41902605       42080436     NR_126048  LOC102724238
17   chr9   41902605       42080436     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   19911625       20129737  NM_001145442         POTEM
1   chr14   19911625       20129737     NR_110505  LOC100508046
2   chr14   19911625       20129737     NR_110526       DUXAP10
3   chr14   19911625       20129737     NR_122111     LINC01296
5   chr15   22202855       22756751  NM_001001413      GOLGA6L1
6   chr15   22202855       22756751  NM_001004719         OR4M2
7   chr15   22202855       22756751  NM_001005241         OR4N4
8   chr15   22202855       22756751  NM_001271664     GOLGA6L22
9   chr15   22202855       22756751     NR_015416     LOC727924
10  chr15   22202855       22756751     NR_027407      GOLGA8DP
11  chr15   22202855       22756751     NR_028067        OR4N3P
12  chr15   22202855       22756751     NR_031672      MIR1268A
13  chr15   22202855       22756751     NR_033735        REREP3
14  chr15   22202855       22756751     NR_039734     MIR4509-3
15  chr15   22202855       22756751     NR_110480  LOC101927079
17  chr15   22202855       22756751     NR_135666   IGHV1OR15-3
18  chr15   22202855       22756751     NR_135694   IGHV1OR15-1
19   chr4   56338981       56500093  NM_001267843         CLOCK
21   chr4   56338981       56500093     NM_006681           NMU
22   chr4   56338981       56500093     NM_152401         PDCL2
24   chr4  169206720      169315164  NM_001012967        DDX60L
26   chr4  169206720      169315164     NM_017631         DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143156244      143401140     NR_110761  LOC102723769
1   chr10   67903969       68085164  NM_001127384        CTNNA3
3   chr13   89208340       89344377     NR_047490     LINC00560
4    chr6  145792999      145994364     NM_005670         EPM2A
5    chr7   62961294       63209472     NR_036246     MIR4283-1
6    chr9   39118579       39789205  NM_001085452     SPATA31A1
7    chr9   39118579       39789205     NM_033655       CNTNAP3
8    chr9   39118579       39789205     NR_003528       ZNF658B
9    chr9   39118579       39789205     NR_026803       FAM74A1
10   chr9  132373549      132652188     NM_000113         TOR1A
11   chr9  132373549      132652188  NM_001286796         NTMT1
15   chr9  132373549      132652188     NM_004878         PTGES
16   chr9  132373549      132652188     NM_006676         USP20
17   chr9  132373549      132652188     NM_014506         TOR1B
18   chr9  132373549      132652188     NM_015033         FNBP1
19   chr9  132373549      132652188     NM_016307         PRRX2
20   chr9  132373549      132652188     NM_016520       C9orf78
21   chr9  132373549      132652188     NM_177999          ASB6
22   chr9  132373549      132652188     NM_199350       C9orf50
23   chr9  132373549      132652188     NR_106914       MIR6855
24   chr9  132373549      132652188     NR_132102     PRRX2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   78373031       78529666  NM_001101404         SH2D7
1   chr15   78373031       78529666  NM_001199377        ACSBG1
2   chr15   78373031       78529666  NM_001301224          CIB2
3   chr15   78373031       78529666     NM_005530         IDH3A
4    chr6  162643666      162819312     NM_013988         PARK2
5    chr7   64073815       64224451  NM_001282360        ZNF107
6    chr7   64073815       64224451     NR_077227  LOC100128885
8    chr7   64073815       64224451     NR_106898       MIR6839
9    chr7  110552950      110972069  NM_001099658         LRRN3
10   chr7  110552950      110972069  NM_001244606        IMMP2L
12   chr7  110620448      110885203  NM_001099658         LRRN3
13   chr7  110620448      110885203  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  244972102      245093344  NM_001312871      COX20
2    chr1  244972102      245093344     NM_004501     HNRNPU
4    chr1  244972102      245093344     NR_132782   SNORA100
5   chr19   33740623       34145719     NM_000285       PEPD
6   chr19   33740623       34145719  NM_001127895      CHST8
8   chr19   33740623       34145719  NM_001252296      CEBPG
9   chr19   33740623       34145719  NM_001285829      CEBPA
11  chr19   33740623       34145719     NR_026887  CEBPA-AS1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   67907719       68236262  NM_001127384       CTNNA3
2   chr10   81468088       81973672  NM_001012973        PLAC9
3   chr10   81468088       81973672  NM_001270367      TMEM254
6   chr10   81468088       81973672  NM_001278407       ANXA11
8   chr10   81468088       81973672  NM_001278495       NUTM2B
10  chr10   81468088       81973672     NM_003019        SFTPD
12  chr10   81468088       81973672     NR_002724        MBL1P
13  chr10   81468088       81973672     NR_027431  TMEM254-AS1
14  chr10   81468088       81973672     NR_029407    LOC642361
15  chr10   81468088       81973672     NR_033857      BMS1P21
16  chr10   81468088       81973672     NR_038464    LINC00857
17  chr10   81468088       81973672     NR_120611   NUTM2B-AS1
21   chr9    6568815        6840294     NM_000170         GLDC
22   chr9    6568815        6840294  NM_001146695        KDM4C,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1  187201870      187445511     NR_126347  LINC01036
1  chr1  187201870      187445511     NR_132374  LINC01037
2  chr3   41358640       41753464  NM_001322500       ULK4
4  chr8   97750185       97955191     NM_016134        CPQ,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   27592374       27713319  NM_001034842    PTCHD3
1   chr10   27592374       27713319     NR_138082   ARMC4P1
2   chr14   26951721       27077686     NM_002515     NOVA1
4   chr14   45445015       45556350  NM_001308120   FAM179B
5   chr14   45445015       45556350     NM_017922    PRPF39
6   chr17    3890660        4014416     NM_015113     ZZEF1
7    chr4   71370252       71570068  NM_001286731      AMTN
8    chr4   71370252       71570068     NM_016519      AMBN
9    chr4   71370252       71570068     NM_020368      UTP3
10   chr4   71370252       71570068     NM_031889      ENAM
11   chr4   71370252       71570068     NM_144646    JCHAIN
12   chr7   64182779       64322819  NM_001160183    ZNF138,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67675064       67813992  NM_001127384        CTNNA3
2    chr2   97180615       97565451  NM_001115016        KANSL3
3    chr2   97180615       97565451  NM_001122646       FAM178B
5    chr2   97180615       97565451  NM_001293083        FER1L5
6    chr2   97180615       97565451  NM_001319085        ARID5A
8    chr2   97180615       97565451  NM_001322354        LMAN2L
9    chr2   97180615       97565451     NM_016466       ANKRD39
11   chr2   97180615       97565451     NM_017623         CNNM3
12   chr2   97180615       97565451     NM_017789        SEMA4C
13   chr2   97180615       97565451     NM_020184         CNNM4
15   chr2   97180615       97565451     NM_144994       ANKRD23
16   chr2   97180615       97565451     NR_036074       MIR3127
18   chr2   97180615       97565451     NR_135564  LOC105373496,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   71671113       71787605     NR_047699     LINC00348
1   chr16   68598989       68731591  NM_001305204         ZFP90
3   chr16   68598989       68731591  NM_001317195          CDH3
4   chr17   14167945       14630805     NM_006041      HS3ST3B1
5   chr17   14167945       14630805     NR_026880      MGC12916
6    chr4   69296731       69425868     NM_001077       UGT2B17
7    chr4   69296731       69425868     NM_014058     TMPRSS11E
8    chr4  169248162      169657265  NM_001012967        DDX60L
9    chr4  169248162      169657265  NM_001166108         PALLD
12   chr6  162520273      162626563     NM_013988         PARK2
13   chr7   64059153       64231767  NM_001282360        ZNF107
14   chr7   64059153       64231767     NR_077227  LOC100128885
16   chr7   64059153       64231767     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244984288      245170407  NM_001143943        EFCAB2
2    chr1  244984288      245170407  NM_001312871         COX20
4    chr1  244984288      245170407     NM_004501        HNRNPU
7    chr1  244984288      245170407     NR_111907  LOC101928068
8    chr1  244984288      245170407     NR_132782      SNORA100
9   chr16   15381654       15766878  NM_001128423        MPV17L
10  chr16   15381654       15766878  NM_001142469      C16orf45
11  chr16   15381654       15766878  NM_001143979          NDE1
12  chr16   15381654       15766878  NM_001184998      KIAA0430
13  chr16   15381654       15766878  NM_001277325        NPIPA5
16  chr16   15381654       15766878     NR_030159        MIR484
17  chr16   15381654       15766878     NR_106761       MIR6506
18   chr9  116750020      116858464  NM_001318041        ZNF618
19   chr9  116750020      116858464     NM_001633          AMBP
20   chr9  116750020      116858464     NM_138424         KIF12,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   66930163       67118781     NM_005585      SMAD6
1  chr15   66930163       67118781     NR_110372  LINC01169
2   chr4    9023228        9226134  NM_001256852   USP17L10
3   chr4    9023228        9226134  NM_001256853   USP17L12
4   chr4    9023228        9226134  NM_001256854   USP17L11
5   chr7  108466009      108581807  NM_001024607    C7orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152992784      153162330  NM_001014291        SPRR2G
1    chr1  152992784      153162330  NM_001014450        SPRR2F
2    chr1  152992784      153162330  NM_001017418        SPRR2B
3    chr1  152992784      153162330  NM_001024209        SPRR2E
4    chr1  152992784      153162330     NM_003125        SPRR1B
5    chr1  152992784      153162330     NM_005988        SPRR2A
6    chr1  152992784      153162330     NM_006945        SPRR2D
7    chr1  152992784      153162330     NR_003062        SPRR2C
8    chr1  152992784      153162330     NR_110685  LOC101928009
9   chr15   21167366       21275632     NR_040094     LINC01193
10  chr20    8097922        8281764     NM_015192         PLCB1
11  chr20    8097922        8281764     NR_046809     PLCB1-IT1
12   chr3   50308777       50627208  NM_001171741       C3orf18
13   chr3   50308777       50627208  NM_001200016          NAT6
15   chr3   50308777       50627208  NM_001200029         HYAL3
16   chr3   50308777       50627208  NM_001206957        RASSF1
17   chr3   50308777       50627208  NM_001290060        SEMA3B
20   chr3   50308777       50627208  NM_001291101      CACNA2D2
21   chr3   50308777       50627208  NM_001291284      CYB561D2
22   chr3   50308777       50627208  NM_001308379       ZMYND10
24   chr3   50308777       50627208     NM_003773         HYAL2
27   chr3   50308777       50627208     NM_006545         NPRL2
28   chr3   50308777       50627208     NM_006764         IFRD2
29   chr3   50308777       50627208     NM_007024       TMEM115
30   chr3   50308777       50627208     NM_007275         TUSC2
31   chr3   50308777       50627208     NM_016173         HEMK1
33   chr3   50308777       50627208     NM_153215        LSMEM2
34   chr3   50308777       50627208     NM_153281         HYAL1
38   chr3   50308777       50627208     NR_106932       MIR6872
39   chr3   50308777       50627208     NR_109831    RASSF1-AS1
42   chr4   72988614       73469861     NM_004885        NPFFR2
43   chr4   72988614       73469861     NM_014243       ADAMTS3
45   chr5   17683788       17846105     NR_134286     LOC646241
47   chr7   14944748       15453410  NM_001004320          AGMO,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  102431745      102544573     NR_110211      OLFM3
1  chr16    6769881        7035430  NM_001142334     RBFOX1
4  chr18   61766378       61897304     NR_027245  LINC00305
5  chr18   61766378       61897304     NR_033881  LOC284294
6  chr18   61766378       61897304     NR_033983  LINC01538
7   chr7  110776269      110943424  NM_001244606     IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   21401225       21538015  NM_001326542       SP4
1  chr7   21401225       21538015     NR_031594   MIR1183
3  chr7  110345274      110590170  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   29516915       29626642     NR_049833     MIR3680-2
1  chr16   29516915       29626642     NR_135305        SMG1P2
3   chr2   50772891       50903221  NM_001330082         NRXN1
4   chr4  131821016      133119538     NR_125883  LOC101927305
6   chr7   75389383       75502573     NM_002991         CCL24
7   chr7   75389383       75502573     NM_006072         CCL26,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17      27441        2500889     NM_000430      PAFAH1B1
1   chr17      27441        2500889  NM_001013672      C17orf97
2   chr17      27441        2500889  NM_001080779         MYO1C
4   chr17      27441        2500889     NM_001092           ABR
5   chr17      27441        2500889  NM_001098202          HIC1
6   chr17      27441        2500889  NM_001128159         VPS53
8   chr17      27441        2500889  NM_001163673         WDR81
11  chr17      27441        2500889  NM_001164405        BHLHA9
12  chr17      27441        2500889  NM_001164407         TLCD2
13  chr17      27441        2500889  NM_001165920      SERPINF2
15  chr17      27441        2500889  NM_001190411        RPH3AL
16  chr17      27441        2500889  NM_001205319           NXN
17  chr17      27441        2500889  NM_001256827          SMG6
22  chr17      27441        2500889  NM_001284498       SLC43A2
24  chr17      27441        2500889  NM_001304803           SRR
25  chr17      27441        2500889  NM_001317947          MRM3
26  chr17      27441        2500889  NM_001318008        FAM57A
30  chr17      27441        2500889  NM_001329903      SERPINF1
33  chr17      27441        2500889  NM_001346574          DPH1
34  chr17      27441        2500889  NM_001346700         SGSM2
35  chr17      27441        2500889     NM_002945          RPA1
36  chr17      27441        2500889     NM_003585         DOC2B
37  chr17      27441        2500889     NM_005206           CRK
38  chr17      27441        2500889     NM_006224        PITPNA
39  chr17      27441        2500889     NM_006445         PRPF8
41  chr17      27441        2500889     NM_006761         YWHAE
42  chr17      27441        2500889     NM_013337        TIMM22
44  chr17      27441        2500889     NM_015721        GEMIN4
45  chr17      27441        2500889     NM_016080         GLOD4
46  chr17      27441        2500889     NM_016532        INPP5K
..    ...        ...            ...           ...           ...
61  chr17      27441        2500889     NM_182705         RFLNB
62  chr17      27441        2500889     NR_003072      SNORD91A
63  chr17      27441        2500889     NR_003073      SNORD91B
64  chr17      27441        2500889     NR_024120        DBIL5P
65  chr17      27441        2500889     NR_028075        SCARF1
66  chr17      27441        2500889     NR_028335     LOC284009
67  chr17      27441        2500889     NR_028502       MIR22HG
68  chr17      27441        2500889     NR_028514    PITPNA-AS1
69  chr17      27441        2500889     NR_029494         MIR22
70  chr17      27441        2500889     NR_029625        MIR212
71  chr17      27441        2500889     NR_029674        MIR132
72  chr17      27441        2500889     NR_036148       MIR3183
73  chr17      27441        2500889     NR_040011  LOC100506388
74  chr17      27441        2500889     NR_104420  LOC100506371
75  chr17      27441        2500889     NR_110888  LOC101927839
76  chr17      27441        2500889     NR_135633  LOC101927727
77  chr17      27441        2500889     NR_135642  LOC105371485
78  chr17      27441        2500889     NR_136407  LOC105371430
79   chr2  186285342      186619878     NM_173651         FSIP2
80   chr2  186285342      186619878     NR_110214  LOC101927196
83   chr4  130512077      131109484     NR_110753  LOC101927282
84   chr6  145843120      145965971     NM_005670         EPM2A
85   chr7   75054306       75232612  NM_001099415       POM121C
86   chr7   75054306       75232612  NM_001243198          HIP1
87   chr7   75054306       75232612  NM_001306141        SPDYE5
88   chr7   75054306       75232612     NR_028059        PMS2P3
89   chr7   75376988       75487925     NM_002991         CCL24
90   chr7   75376988       75487925     NM_006072         CCL26
91   chr7  110650332      111240371  NM_001099658         LRRN3
92   chr7  110650332      111240371  NM_001244606        IMMP2L

[68 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   77981698       78124731     NR_110288  LOC101927967
1  chr20   14640267       14849352     NM_080676       MACROD2
2   chr4  161750862      162324524  NM_001128428         FSTL5
3   chr6   89393520       89594885  NM_001286428         RNGTT,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   54593167       54806630  NM_001080534     UNC13C
2   chr2   50984759       51528461  NM_001330079      NRXN1
5   chr2   50984759       51528461     NR_135237  LOC730100,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28570080       28715284     NR_033351       GOLGA8F
1   chr15   28570080       28715284     NR_033353       GOLGA8G
2   chr15   28570080       28715284     NR_039734     MIR4509-3
3    chr2  110158448      110426271  NM_001099289        SH3RF3
4    chr2  110158448      110426271  NM_001321504        SEPT10
6    chr2  110158448      110426271     NM_023016        SOWAHC
7   chr20   41023458       41144882     NM_133170         PTPRT
8    chr7   19702476       20372006  NM_001002926       TWISTNB
9    chr7   19702476       20372006     NM_002214         ITGB8
10   chr7   19702476       20372006     NM_152774       TMEM196
11   chr7   19702476       20372006     NM_182762         MACC1
12   chr7   19702476       20372006     NR_036101       MIR3146
13   chr7   19702476       20372006     NR_046756     MACC1-AS1
14   chr7   19702476       20372006     NR_110114  LOC101927668
15   chr7   19702476       20372006     NR_110117  LOC101927769
16   chr7   19702476       20372006     NR_110120  LOC101927811
17   chr7   19702476       20372006     NR_134567  LOC100506098,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12818466       12933677  NM_001013631   HNRNPCL1
1    chr1   12818466       12933677  NM_001080830   PRAMEF12
2    chr1   12818466       12933677  NM_001146181   HNRNPCL3
3    chr1   12818466       12933677  NM_001146344   PRAMEF11
4    chr1   12818466       12933677  NM_001294139    PRAMEF1
5    chr1   12818466       12933677  NM_001302551   HNRNPCL4
7    chr1   12818466       12933677     NM_023014    PRAMEF2
8    chr1   12818466       12933677     NM_152290   C1orf158
9   chr11   89657373       89931095  NM_001105522   TRIM49D2
10  chr11   89657373       89931095  NM_001136486     TRIM64
11  chr11   89657373       89931095  NM_001143975     UBTFL1
12  chr11   89657373       89931095  NM_001195234    TRIM49C
13  chr11   89657373       89931095  NM_001206627   TRIM49D1
14  chr11   89657373       89931095     NM_005467    NAALAD2
15  chr11   89657373       89931095     NR_028346   TRIM53AP
16  chr11   95772794       95884310     NM_032427      MAML2
17   chr9   41862078       42008593     NR_003670     FGF7P3
18   chr9   41862078       42008593     NR_015363      GLIDR
21   chr9   88425756       88542806     NR_029410  LOC389765,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  130251292      130371672     NM_133448      TMEM132D
1   chr13   63159457       63308447     NR_047029     LINC00448
2    chr2     906365        1018777     NM_018968         SNTG2
3    chr2     906365        1018777     NR_136151  LOC101060391
4   chr21   13440702       14913380     NR_026916    ANKRD30BP2
5   chr21   13440702       14913380     NR_036164     MIR3156-3
6    chr3    4103676        4563458  NM_001164675         SUMF1
7    chr3    4103676        4563458  NM_001168272         ITPR1
8    chr3    4103676        4563458  NM_001243723        SETMAR
10   chr3    4103676        4563458     NR_108075     ITPR1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245000370      245388057  NM_001143943        EFCAB2
2    chr1  245000370      245388057  NM_001312871         COX20
4    chr1  245000370      245388057     NM_004501        HNRNPU
5    chr1  245000370      245388057     NM_018012        KIF26B
8    chr1  245000370      245388057     NR_111907  LOC101928068
9    chr1  245000370      245388057     NR_132782      SNORA100
10  chr12   27205865       27331473  NM_001080406      C12orf71
11  chr17     122386         235717  NM_001190411        RPH3AL
12  chr17     122386         235717     NR_040011  LOC100506388
13   chr7  110710291      110860596  NM_001099658         LRRN3
14   chr7  110710291      110860596  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152457118      152582133     NM_019060         CRCT1
1    chr1  152457118      152582133     NM_032563         LCE3D
2    chr1  152457118      152582133     NM_178434         LCE3C
3    chr1  152457118      152582133     NM_178435         LCE3E
4    chr1  152457118      152582133     NM_178438         LCE5A
5   chr10   67662457       67765617  NM_001127384        CTNNA3
7   chr20   14810456       14921826     NM_080676       MACROD2
8   chr20   14810456       14921826     NR_037841   MACROD2-AS1
10   chr7  143014563      143123871     NM_000083         CLCN1
11   chr7  143014563      143123871  NM_001278297       FAM131B
12   chr7  143014563      143123871  NM_001322263  LOC100507507
13   chr7  143014563      143123871     NM_003461           ZYX
14   chr7  143014563      143123871     NM_005232         EPHA1
16   chr7  143014563      143123871     NR_033897     EPHA1-AS1
17   chr7  143014563      143123871     NR_106952       MIR6892,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr11   63536651       64954772     NM_000244          MEN1
1    chr11   63536651       64954772  NM_001008778         SPDYC
2    chr11   63536651       64954772  NM_001039469         MARK2
3    chr11   63536651       64954772  NM_001039496         TEX40
4    chr11   63536651       64954772  NM_001098670       RASGRP2
6    chr11   63536651       64954772  NM_001128612        NUDT22
8    chr11   63536651       64954772  NM_001135208         FKBP2
9    chr11   63536651       64954772  NM_001160393         TRPT1
10   chr11   63536651       64954772  NM_001164716          PYGM
11   chr11   63536651       64954772  NM_001170726        GPR137
14   chr11   63536651       64954772  NM_001178030           SF1
16   chr11   63536651       64954772  NM_001198868         CAPN1
18   chr11   63536651       64954772  NM_001242631       TMEM262
19   chr11   63536651       64954772  NM_001243733         VEGFB
20   chr11   63536651       64954772  NM_001276326      SLC22A12
21   chr11   63536651       64954772  NM_001277233        TM7SF2
22   chr11   63536651       64954772  NM_001282445          EHD1
23   chr11   63536651       64954772  NM_001282450         ESRRA
24   chr11   63536651       64954772  NM_001282652         STIP1
25   chr11   63536651       64954772  NM_001286082       TRMT112
26   chr11   63536651       64954772  NM_001300800         NAA40
27   chr11   63536651       64954772  NM_001300803         MAJIN
28   chr11   63536651       64954772  NM_001300807         BATF2
29   chr11   63536651       64954772  NM_001307981        DNAJC4
30   chr11   63536651       64954772  NM_001307985      SLC22A11
31   chr11   63536651       64954772  NM_001316314         PLCB3
32   chr11   63536651       64954772  NM_001317090         KCNK4
33   chr11   63536651       64954772  NM_001318361       RPS6KA4
34   chr11   63536651       64954772     NM_001667          ARL2
35   chr11   63536651       64954772     NM_001997           FAU
..     ...        ...            ...           ...           ...
60   chr11   63536651       64954772     NM_032251       CCDC88B
61   chr11   63536651       64954772     NM_032431         SYVN1
62   chr11   63536651       64954772     NM_032989           BAD
65   chr11   63536651       64954772     NM_080668         CDCA5
66   chr11   63536651       64954772     NM_130769         GPHA2
71   chr11   63536651       64954772     NM_138471      C11orf84
72   chr11   63536651       64954772     NM_138689      PPP1R14B
73   chr11   63536651       64954772     NM_138732         NRXN2
76   chr11   63536651       64954772     NM_173587         RCOR2
77   chr11   63536651       64954772     NM_181651         PRDX5
78   chr11   63536651       64954772     NR_003089         OTUB1
79   chr11   63536651       64954772     NR_029578        MIR192
80   chr11   63536651       64954772     NR_029829      MIR194-2
81   chr11   63536651       64954772     NR_031602       MIR1237
83   chr11   63536651       64954772     NR_037567        MRPL49
85   chr11   63536651       64954772     NR_037650    ARL2-SNX15
87   chr11   63536651       64954772     NR_073177  LOC100996455
88   chr11   63536651       64954772     NR_106807       MIR6749
89   chr11   63536651       64954772     NR_106808       MIR6750
90   chr11   63536651       64954772     NR_106809       MIR6751
91   chr11   63536651       64954772     NR_106939       MIR6879
92   chr11   63536651       64954772     NR_106977       MIR7155
93   chr11   63536651       64954772     NR_133638    MIR194-2HG
97   chr11   63536651       64954772     NR_133662   KCNK4-TEX40
98   chr11   63536651       64954772     NR_135086  LOC105369340
100   chr3    7054348        7179440     NM_181874          GRM7
101   chr3   41276210       41457405  NM_001322500          ULK4
102   chr3   41276210       41457405  NM_001330729        CTNNB1
105   chr7  110640542      110758549  NM_001099658         LRRN3
106   chr7  110640542      110758549  NM_001244606        IMMP2L

[74 rows x 5 columns],   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr6  161740372      163115679  NM_013988         PARK2
1  chr6  161740372      163115679  NR_134594  LOC105378098,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  133994201      134141021  NM_001105521       JAKMIP3
1   chr10  133994201      134141021  NM_001318878        STK32C
4   chr10  133994201      134141021     NM_006426        DPYSL4
7   chr11   86730662       87040403  NM_001168724       TMEM135
8   chr12   10593636       10807036  NM_001300739        MAGOHB
9   chr12   10593636       10807036  NM_001304448         KLRC1
12  chr12   10593636       10807036     NM_018423         STYK1
14  chr12   10593636       10807036     NR_028045        KLRA1P
15   chr2   35406111       35999555     NR_039629      MIR548AD
16   chr2  117990635      118959083  NM_001321332        INSIG2
18   chr2  117990635      118959083     NM_006773         DDX18
19   chr2  117990635      118959083     NM_019044        CCDC93
20  chr21   13489239       15087247     NM_174981         POTED
21  chr21   13489239       15087247     NR_026916    ANKRD30BP2
22  chr21   13489239       15087247     NR_036061     MIR3118-1
23  chr21   13489239       15087247     NR_036164     MIR3156-3
24  chr21   13489239       15087247     NR_110544  LOC102724188,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   24367553       24503581     NR_026647     PWRN2
1    chr4    9041047        9362903  NM_001242326  USP17L25
8    chr4    9041047        9362903  NM_001256852  USP17L10
9    chr4    9041047        9362903  NM_001256853  USP17L12
11   chr4    9041047        9362903  NM_001256854  USP17L11
14   chr4    9041047        9362903  NM_001256855  USP17L13
15   chr4    9041047        9362903  NM_001256857  USP17L17
16   chr4    9041047        9362903  NM_001256860  USP17L19
17   chr4    9041047        9362903  NM_001256861  USP17L20
18   chr4    9041047        9362903  NM_001256894  USP17L15
19   chr4    9041047        9362903     NR_046416  USP17L9P
20   chr7   64090061       64243372  NM_001282360    ZNF107
22   chr7   64090061       64243372     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48338604       49564719  NM_001004702      OR4C3
1   chr11   48338604       49564719  NM_001005512     OR4A47
2   chr11   48338604       49564719  NM_001005513     OR4C45
3   chr11   48338604       49564719  NM_001193472      FOLH1
4   chr11   48338604       49564719  NM_001206626    TRIM49B
5   chr11   48338604       49564719  NM_001206631    TRIM64C
6   chr13   65196583       67746503     NM_020403      PCDH9
7   chr13   65196583       67746503     NR_039692   MIR548X2
8   chr13   65196583       67746503     NR_039853    MIR4704
9   chr13   65196583       67746503     NR_046527  PCDH9-AS2
10  chr13   65196583       67746503     NR_046636  PCDH9-AS3
11  chr13   65196583       67746503     NR_046637  PCDH9-AS4
12  chr13   65196583       67746503     NR_132362  LINC01052,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   56454994       57993355  NM_001142770    PCDH15
3  chr10   56454994       57993355  NM_001190478  MTRNR2L5,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   20931481       22112388  NM_001277303     POTEB2
1   chr15   20931481       22112388  NM_001277304      POTEB
2   chr15   20931481       22112388     NM_207355     POTEB3
4   chr15   20931481       22112388     NR_024387    CXADRP2
5   chr15   20931481       22112388     NR_027053  LOC646214
6   chr15   20931481       22112388     NR_027992     NBEAP1
7   chr15   20931481       22112388     NR_028506      NF1P2
8   chr15   20931481       22112388     NR_036062  MIR3118-2
9   chr15   20931481       22112388     NR_036063  MIR3118-3
10  chr15   20931481       22112388     NR_040094  LINC01193
11  chr15   20931481       22112388     NR_049895  MIR5701-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   55730001       56327408  NM_001142770        PCDH15
3   chr10   55730001       56327408     NR_134503  LOC105378311
4    chr2  110088296      110204270  NM_001099289        SH3RF3
5    chr4    9050162        9222823  NM_001256852      USP17L10
6    chr4    9050162        9222823  NM_001256853      USP17L12
7    chr4    9050162        9222823  NM_001256854      USP17L11
8    chr5  151275400      151489052     NM_000171         GLRA1
9    chr5  151275400      151489052     NR_109876    CTB-12O2.1
10   chr7  110606042      110777053  NM_001099658         LRRN3
11   chr7  110606042      110777053  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr16   28751269       28895829  NM_001145795       SH2B1
2   chr16   28751269       28895829  NM_001286075      ATP2A1
3   chr16   28751269       28895829  NM_001287251      NPIPB9
5   chr16   28751269       28895829     NM_003321        TUFM
8   chr16   28751269       28895829     NM_148416      ATXN2L
9   chr16   28751269       28895829     NR_039872     MIR4721
10  chr16   28751269       28895829     NR_046287  ATP2A1-AS1
11   chr4  121627210      121796236     NM_018699       PRDM5
12   chr4  181978622      182674077     NR_033918   LINC00290,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12767160       12875426  NM_001080830      PRAMEF12
1    chr1   12767160       12875426  NM_001103170       AADACL3
2    chr1   12767160       12875426  NM_001294139       PRAMEF1
4    chr1   12767160       12875426     NM_152290      C1orf158
5   chr14   37633177       37765319  NM_001171170      SLC25A21
6   chr14   37633177       37765319  NM_001195296        MIPOL1
7   chr14   37633177       37765319     NR_033240  SLC25A21-AS1
8   chr21   23082938       23294350     NR_038872     LINC00317
9   chr21   23082938       23294350     NR_109958     LINC01425
10   chr8  110260216      110370601  NM_001128211        NUDCD1
11   chr8  110260216      110370601  NM_001193557          ENY2
13   chr9   41451462       42176793  NM_001113541     SPATA31A5
14   chr9   41451462       42176793     NM_015667     SPATA31A7
15   chr9   41451462       42176793     NR_003528       ZNF658B
16   chr9   41451462       42176793     NR_003670        FGF7P3
17   chr9   41451462       42176793     NR_015363         GLIDR
18   chr9   41451462       42176793     NR_026803       FAM74A1
21   chr9   41451462       42176793     NR_126048  LOC102724238
22   chr9   41451462       42176793     NR_126049     LOC554249,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr5  114122674      114793300  NM_001017397    TRIM36
2  chr5  114122674      114793300  NM_001040440   CCDC112
5  chr5  114122674      114793300     NM_005023    PGGT1B,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr16   21467500       21582631  NR_002594      SLC7A5P2
1  chr16   21467500       21582631  NR_027155        SMG1P3
2  chr16   21467500       21582631  NR_049833     MIR3680-2
3   chr4   69284183       69395052  NM_014058     TMPRSS11E
4   chr5   98741023       98885597  NR_110562  CTD-2151A2.1
5   chr6   77518114       78219471  NM_000863         HTR1B
6   chr9   38872222       39216672  NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68418251       68560144  NM_001127384        CTNNA3
2   chr22   17211256       17332397     NM_175878          XKR3
3   chr22   17211256       17332397     NR_003607       HSFY1P1
4   chr22   17211256       17332397     NR_134584  LOC101929350
5    chr5   99320533      101815462  NM_001289004       SLCO6A1
6    chr5   99320533      101815462     NM_005668       ST8SIA4
8    chr5   99320533      101815462     NM_180991       SLCO4C1
9    chr5   99320533      101815462     NM_198507       FAM174A
10   chr5   99320533      101815462     NR_027503  LOC100133050
11   chr5   99320533      101815462     NR_031686       MIR548P,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   15053102       15223756  NM_001270767          NTAN1
1   chr16   15053102       15223756  NM_001285445         PDXDC1
6   chr16   15053102       15223756  NM_001301064           RRN3
8   chr16   15053102       15223756     NR_123721  PKD1P6-NPIPP1
10  chr16   15053102       15223756     NR_125434   LOC100505915
11   chr4   69293126       69400340     NM_014058      TMPRSS11E, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr16   68628694       68775173  NM_001317184      CDH1
1   chr16   68628694       68775173  NM_001317195      CDH3
2    chr2   97445887       97578299  NM_001122646   FAM178B
4    chr2   97445887       97578299     NM_016466   ANKRD39
6    chr2   97445887       97578299     NM_017623     CNNM3
7    chr2   97445887       97578299     NM_017789    SEMA4C
8    chr2   97445887       97578299     NM_020184     CNNM4
9    chr2   97445887       97578299     NM_144994   ANKRD23
10   chr2   97445887       97578299     NR_036074   MIR3127
11   chr6  162348720      163022564     NM_013988     PARK2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr4  108628964      109084386  NM_001136258         SGMS2
1   chr4  108628964      109084386  NM_001166119          LEF1
2   chr4  108628964      109084386  NM_001184705          HADH
4   chr4  108628964      109084386     NM_005443        PAPSS1
7   chr4  108628964      109084386     NM_183075        CYP2U1
8   chr4  108628964      109084386     NR_125929  LOC101929595
9   chr5  142423267      142574683  NM_001135608      ARHGAP26
10  chr5  142423267      142574683     NR_046816  ARHGAP26-IT1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145319277      145454516  NM_001277444         NBPF9
1    chr1  145319277      145454516  NM_001278267        NBPF20
2    chr1  145319277      145454516  NM_001302371        NBPF10
3    chr1  145319277      145454516  NM_001313972         TXNIP
5    chr1  145319277      145454516     NM_145277          HFE2
6    chr1  145319277      145454516     NR_104217       NBPF25P
7    chr1  145319277      145454516     NR_125967  LOC101928979
8   chr12  128583629      128912172  NM_001136103      TMEM132C
9   chr12  128583629      128912172     NR_037406       MIR3612
10  chr12  128583629      128912172     NR_039720      MIR4419B
11  chr12  128583629      128912172     NR_104647  LOC100996679
12  chr12  128583629      128912172     NR_104648  LOC101927694
13   chr2   51237473       51504542  NM_001330079         NRXN1
16   chr2   51237473       51504542     NR_135237     LOC730100
17   chr9   41901627       42328200     NR_003670        FGF7P3
18   chr9   41901627       42328200     NR_015363         GLIDR
21   chr9   41901627       42328200     NR_126048  LOC102724238
22   chr9   41901627       42328200     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28205727       28465258     NM_000275          OCA2
2   chr15   28205727       28465258     NM_004667         HERC2
3   chr15   42621733       42750412  NM_001284306        ZNF106
5   chr15   42621733       42750412     NM_173087         CAPN3
8   chr15   42621733       42750412     NM_198141          GANC
9   chr21   23426725       23551821     NR_038400     LINC00308
10  chr21   23426725       23551821     NR_109959  LOC101927843
11   chr4   69265098       69383178     NM_014058     TMPRSS11E
12   chr7   29447498       29580374  NM_001293069          CHN2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  144784779      144931667  NM_001002811   PDE4DIP
4    chr1  144784779      144931667  NM_001277444     NBPF9
5    chr1  144784779      144931667  NM_001278267    NBPF20
6    chr1  144784779      144931667     NR_102405     NBPF8
7   chr10   55682797       56010739  NM_001142770    PCDH15
10   chr4  108618631      108744868     NM_005443    PAPSS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10  100711983      100839972  NM_001166244     HPSE2
1   chr4   91124917       91281928  NM_001145065    CCSER1
3   chr8   15287164       15405536     NM_006765     TUSC3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12   85480425       86357880  NM_001079910        LRRIQ1
1  chr12   85480425       86357880     NM_005447        RASSF9
2  chr12   85480425       86357880     NM_006183           NTS
3  chr12   85480425       86357880     NM_006982          ALX1
4   chr4   11832182       13084014     NR_125910  LOC101929019
5   chr7  109507581      109630076     NR_003024       EIF3IP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  100636023      100768899  NM_001166244         HPSE2
1   chr10  100636023      100768899     NR_106762       MIR6507
2   chr12   16297252       16408358  NM_001170798       SLC15A5
3   chr14   40715247       42009778     NR_109757     LOC644919
5    chr4   69241743       69395454     NM_014058     TMPRSS11E
6    chr9   41511087       42082381     NR_003528       ZNF658B
7    chr9   41511087       42082381     NR_003670        FGF7P3
8    chr9   41511087       42082381     NR_015363         GLIDR
9    chr9   41511087       42082381     NR_026803       FAM74A1
12   chr9   41511087       42082381     NR_126048  LOC102724238
13   chr9   41511087       42082381     NR_126049     LOC554249,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr2  112347419      112536037     NM_022662     ANAPC1
1  chr2  112347419      112536037     NR_039929  MIR4771-2
2  chr7  110688929      110790463  NM_001099658      LRRN3
3  chr7  110688929      110790463  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48304622       48446693  NM_001004702      OR4C3
1   chr11   48304622       48446693  NM_001004725      OR4S1
2   chr11   48304622       48446693  NM_001005513     OR4C45
3   chr18   63757081       65420224     NM_021153      CDH19
4   chr18   63757081       65420224     NM_032160       DSEL
5   chr18   63757081       65420224     NR_033921  LOC643542
6   chr18   63757081       65420224     NR_049809    MIR5011
7    chr2   50839240       50947089  NM_001330082      NRXN1
8    chr2   50839240       50947089     NR_130470    MIR8485
9    chr6   38085730       38304205  NM_001172418      BTBD9
10   chr6   38085730       38304205     NM_021943     ZFAND3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  245022789      245289218  NM_001143943        EFCAB2
2   chr1  245022789      245289218     NM_004501        HNRNPU
4   chr1  245022789      245289218     NR_111907  LOC101928068
5   chr2  195590580      195722372     NR_110223  LOC101927431
6   chr5  167334777      167731749  NM_001080428         TENM2
8   chr5  167334777      167731749  NM_001161661          WWC1
9   chr5  167334777      167731749     NR_109894  CTB-178M22.2
10  chr8  110211000      110377376  NM_001128211        NUDCD1
11  chr8  110211000      110377376  NM_001193557          ENY2
13  chr8  110211000      110377376     NM_177531       PKHD1L1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   72308141       72457722     NM_173808     NEGR1
1  chr15   28304537       28458633     NM_000275      OCA2
3  chr15   28304537       28458633     NM_004667     HERC2
4  chr15   28533665       28654115     NM_004667     HERC2
5  chr15   28533665       28654115     NR_033351   GOLGA8F
6  chr15   28533665       28654115     NR_033353   GOLGA8G
7  chr18   55829417       56068880  NM_001144964    NEDD4L,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr13   46992955       47208045  NM_001164213         LRCH1
2    chr13   46992955       47208045     NR_120426     LINC01198
3     chr3    4063597       11794758     NM_000551           VHL
4     chr3    4063597       11794758     NM_000861          HRH1
5     chr3    4063597       11794758     NM_000916          OXTR
6     chr3    4063597       11794758  NM_001008737     LOC401052
7     chr3    4063597       11794758  NM_001018115        FANCD2
8     chr3    4063597       11794758  NM_001024960         ARPC4
9     chr3    4063597       11794758  NM_001077415        CRELD1
10    chr3    4063597       11794758  NM_001080517         SETD5
14    chr3    4063597       11794758  NM_001114092       THUMPD3
15    chr3    4063597       11794758  NM_001128219         VGLL4
18    chr3    4063597       11794758  NM_001136031          ATG7
19    chr3    4063597       11794758  NM_001136232         SEC13
20    chr3    4063597       11794758  NM_001142547        RPUSD3
21    chr3    4063597       11794758  NM_001164675         SUMF1
22    chr3    4063597       11794758  NM_001164839      FANCD2OS
23    chr3    4063597       11794758  NM_001168272         ITPR1
24    chr3    4063597       11794758  NM_001193380        IL17RE
26    chr3    4063597       11794758  NM_001198793   ARPC4-TTLL3
27    chr3    4063597       11794758  NM_001199551         CIDEC
29    chr3    4063597       11794758  NM_001243723        SETMAR
30    chr3    4063597       11794758  NM_001256748         SSUH2
32    chr3    4063597       11794758  NM_001278235         LMCD1
33    chr3    4063597       11794758  NM_001278270         TADA3
36    chr3    4063597       11794758  NM_001308388         CPNE9
37    chr3    4063597       11794758  NM_001317406       SLC6A11
38    chr3    4063597       11794758  NM_001318871         PRRT3
39    chr3    4063597       11794758  NM_001319050         BRPF1
41    chr3    4063597       11794758  NM_001330611        ATP2B2
..     ...        ...            ...           ...           ...
67    chr3    4063597       11794758     NM_033337          CAV3
69    chr3    4063597       11794758     NM_153461        IL17RC
73    chr3    4063597       11794758     NM_181874          GRM7
75    chr3    4063597       11794758     NM_198560        LHFPL4
76    chr3    4063597       11794758     NR_002786        CIDECP
77    chr3    4063597       11794758     NR_004428          EGOT
78    chr3    4063597       11794758     NR_004431        GHRLOS
79    chr3    4063597       11794758     NR_024065     LINC00312
80    chr3    4063597       11794758     NR_026829     LINC00852
81    chr3    4063597       11794758     NR_027007   THUMPD3-AS1
82    chr3    4063597       11794758     NR_027102     LINC00606
83    chr3    4063597       11794758     NR_030614        MIR885
84    chr3    4063597       11794758     NR_033378     LMCD1-AS1
85    chr3    4063597       11794758     NR_036084       MIR378B
86    chr3    4063597       11794758     NR_037162         TTLL3
88    chr3    4063597       11794758     NR_037903   BHLHE40-AS1
89    chr3    4063597       11794758     NR_039953       MIR4790
90    chr3    4063597       11794758     NR_046606      GRM7-AS1
91    chr3    4063597       11794758     NR_046647    SLC6A1-AS1
92    chr3    4063597       11794758     NR_046734     PRRT3-AS1
93    chr3    4063597       11794758     NR_046766    ATP2B2-IT2
94    chr3    4063597       11794758     NR_103443    SRGAP3-AS3
95    chr3    4063597       11794758     NR_103821      EMC3-AS1
96    chr3    4063597       11794758     NR_108075     ITPR1-AS1
97    chr3    4063597       11794758     NR_110123      GRM7-AS3
99    chr3    4063597       11794758     NR_110131  LOC101927394
100   chr3    4063597       11794758     NR_121663    SRGAP3-AS2
102   chr3    4063597       11794758     NR_126505          GHRL
103   chr3    4063597       11794758     NR_131906      GRM7-AS2
106   chr8    3624943        3736453     NM_033225         CSMD1

[74 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   78389512       78590782  NM_001142545         ADCK1
1    chr5   99827047      100412109     NM_005668       ST8SIA4
3    chr5   99827047      100412109     NM_198507       FAM174A
4    chr5   99827047      100412109     NR_031686       MIR548P
5    chr6    4214610        5982779  NM_001143970          CDYL
7    chr6    4214610        5982779  NM_001145115       PPP1R3G
8    chr6    4214610        5982779  NM_001164840         LYRM4
9    chr6    4214610        5982779  NM_001286132         RPP40
11   chr6    4214610        5982779  NM_001318872         FARS2
16   chr6    4214610        5982779     NR_037462       MIR3691
17   chr6    4214610        5982779     NR_106988     MIR7641-2
18   chr6    4214610        5982779     NR_110842  LOC101927950
19   chr6    4214610        5982779     NR_122107      KU-MEL-3
20   chr6    4214610        5982779     NR_125846  LOC101927972
21   chr6    4214610        5982779     NR_126015     LYRM4-AS1,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr14   21691758       21826997     NM_007192     SUPT16H
1  chr14   21691758       21826997     NM_020366     RPGRIP1
2  chr14   21691758       21826997     NM_031314      HNRNPC
3  chr20   25378694       25658569  NM_001290261      ZNF337
4  chr20   25378694       25658569  NM_001318226        NINL
6  chr20   25378694       25658569     NM_021067       GINS1
7  chr20   25378694       25658569     NM_152667        NANP
8  chr20   25378694       25658569     NR_126465  ZNF337-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr22   20059558       20171143  NM_001190326     DGCR8
1   chr22   20059558       20171143  NM_001243537   CCDC188
2   chr22   20059558       20171143  NM_001278639    RANBP1
5   chr22   20059558       20171143     NM_013373    ZDHHC8
6   chr22   20059558       20171143     NM_022727    TRMT2A
7   chr22   20059558       20171143     NR_031706   MIR1306
8   chr22   20059558       20171143     NR_037412   MIR3618
9   chr22   20059558       20171143     NR_106874   MIR6816
10   chr3  131186733      131590397  NM_001289112     CPNE4
11   chr3  131186733      131590397     NM_007208     MRPL3
14   chr3  131186733      131590397     NR_002985   SNORA58
15   chr9   67119761       67275017     NR_002817    AQP7P1,      chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr10   84017934       84202284  NM_001010848           NRG3
2    chr16   29676111       32226031     NM_000034          ALDOA
3    chr16   29676111       32226031     NM_000294          PHKG2
4    chr16   29676111       32226031     NM_000632          ITGAM
5    chr16   29676111       32226031     NM_000887          ITGAX
6    chr16   29676111       32226031  NM_001008274         TRIM72
7    chr16   29676111       32226031  NM_001014979        CCDC189
8    chr16   29676111       32226031  NM_001014999          SLX1A
9    chr16   29676111       32226031  NM_001017390        SULT1A4
10   chr16   29676111       32226031  NM_001024683         ZNF688
11   chr16   29676111       32226031  NM_001030288            SPN
12   chr16   29676111       32226031  NM_001031827          BOLA2
13   chr16   29676111       32226031  NM_001039503         PRSS53
14   chr16   29676111       32226031  NM_001040056          MAPK3
15   chr16   29676111       32226031  NM_001042454        TGFB1I1
16   chr16   29676111       32226031  NM_001080417         ZNF629
17   chr16   29676111       32226031  NM_001083613        TMEM219
18   chr16   29676111       32226031  NM_001099784         FBXL19
19   chr16   29676111       32226031  NM_001105079           FBRS
20   chr16   29676111       32226031  NM_001105247          ARMC5
21   chr16   29676111       32226031  NM_001109659       C16orf92
23   chr16   29676111       32226031  NM_001114099         SEZ6L2
24   chr16   29676111       32226031  NM_001114380          ITGAL
25   chr16   29676111       32226031  NM_001122957          BCKDK
27   chr16   29676111       32226031  NM_001130913         ZNF720
28   chr16   29676111       32226031  NM_001136509         ZNF843
29   chr16   29676111       32226031  NM_001142305         ZNF771
30   chr16   29676111       32226031  NM_001142544           CTF1
31   chr16   29676111       32226031  NM_001142777         HSD3B7
32   chr16   29676111       32226031  NM_001145524          YPEL3
..     ...        ...            ...           ...            ...
118  chr16   29676111       32226031     NM_175900       C16orf54
119  chr16   29676111       32226031     NM_178863         KCTD13
120  chr16   29676111       32226031     NM_181718         ASPHD1
122  chr16   29676111       32226031     NR_002453         SMG1P5
123  chr16   29676111       32226031     NR_002454      LOC606724
124  chr16   29676111       32226031     NR_002556      LOC388242
125  chr16   29676111       32226031     NR_002966        SNORA30
126  chr16   29676111       32226031     NR_015396      CDIPT-AS1
127  chr16   29676111       32226031     NR_024034         CLUHP3
128  chr16   29676111       32226031     NR_024348     FBXL19-AS1
130  chr16   29676111       32226031     NR_027011         YBX3P1
131  chr16   29676111       32226031     NR_031576         MIR762
132  chr16   29676111       32226031     NR_037608  SLX1A-SULT1A3
133  chr16   29676111       32226031     NR_039743        MIR4518
134  chr16   29676111       32226031     NR_039744        MIR4519
137  chr16   29676111       32226031     NR_102400     PYCARD-AS1
139  chr16   29676111       32226031     NR_109773        HERC2P4
140  chr16   29676111       32226031     NR_110940       MIR762HG
143  chr16   29676111       32226031     NR_135055         FRG2KP
144  chr16   29676111       32226031     NR_135178   LOC102723753
145  chr16   29676111       32226031     NR_135192   LOC101928595
147  chr17    1151025        1296491  NM_001164405         BHLHA9
148  chr17    1151025        1296491     NM_006761          YWHAE
149  chr17    1151025        1296491     NM_172367          TUSC5
150   chr4  125364865      125752552  NM_001167882        ANKRD50
152   chr4  125364865      125752552     NR_110838   LOC101927087
153   chr6  162804129      162940638     NM_013988          PARK2
154   chr7   64048396       64175338  NM_001282360         ZNF107
155   chr7   64048396       64175338     NR_077227   LOC100128885
157   chr7   64048396       64175338     NR_106898        MIR6839

[115 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr5     162784         673334  NM_001080478       LRRC14B
1   chr5     162784         673334  NM_001242412          AHRR
2   chr5     162784         673334  NM_001284351        SLC9A3
3   chr5     162784         673334     NM_004168          SDHA
4   chr5     162784         673334     NM_007030          TPPP
5   chr5     162784         673334     NM_007277         EXOC3
6   chr5     162784         673334     NM_013232         PDCD6
7   chr5     162784         673334     NM_018140         CEP72
8   chr5     162784         673334     NM_052909      PLEKHG4B
9   chr5     162784         673334     NM_145265       CCDC127
10  chr5     162784         673334     NR_024158        PP7080
11  chr5     162784         673334     NR_039661       MIR4456
13  chr5     162784         673334     NR_103444  LOC100996325
14  chr5     162784         673334     NR_104613         HRAT5
15  chr5     162784         673334     NR_125375  LOC100288152
16  chr5     162784         673334     NR_126522     EXOC3-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr17     141789         270867  NM_001013672      C17orf97
1  chr17     141789         270867  NM_001190411        RPH3AL
2  chr17     141789         270867     NR_040011  LOC100506388
3  chr17     141789         270867     NR_136407  LOC105371430
4  chr19   33729419       33863596  NM_001285829         CEBPA
5  chr19   33729419       33863596     NR_026887     CEBPA-AS1
6   chr3   72687976       72823971     NM_018130          SHQ1
7   chr3   72687976       72823971     NR_135531  LOC105377162,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   89083061       89747982  NM_001105522     TRIM49D2
2   chr11   89083061       89747982  NM_001136486       TRIM64
3   chr11   89083061       89747982  NM_001143837         NOX4
4   chr11   89083061       89747982  NM_001164397      TRIM64B
5   chr11   89083061       89747982  NM_001206627     TRIM49D1
7   chr11   89083061       89747982  NM_001271942       TRIM77
12  chr11   89083061       89747982     NM_020358       TRIM49
13  chr11   89083061       89747982     NM_153696       FOLH1B
14  chr11   89083061       89747982     NR_028346     TRIM53AP
17  chr20   14703385       14927277     NM_080676      MACROD2
18  chr20   14703385       14927277     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   46980515       47459714     NM_000621         HTR2A
1   chr13   46980515       47459714  NM_001164213         LRCH1
2   chr13   46980515       47459714     NM_001984           ESD
4   chr13   46980515       47459714     NR_046612     HTR2A-AS1
5   chr13   46980515       47459714     NR_120426     LINC01198
6   chr22   20122969       20329206  NM_001243537       CCDC188
7   chr22   20122969       20329206     NM_013373        ZDHHC8
8   chr22   20122969       20329206     NM_023004         RTN4R
9   chr22   20122969       20329206     NM_033257        DGCR6L
10  chr22   20122969       20329206     NR_026919     LINC00896
11  chr22   20122969       20329206     NR_031618       MIR1286
12  chr22   20122969       20329206     NR_038460     LOC284865
13  chr22   20122969       20329206     NR_136572  LOC101927859
14   chr9   28603390       28728219  NM_001258282        LINGO2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   28680974       28787264     NR_033351    GOLGA8F
1  chr15   28680974       28787264     NR_033353    GOLGA8G
2  chr15   28680974       28787264     NR_039734  MIR4509-3
3  chr15   66941270       67042973     NM_005585      SMAD6
4  chr15   66941270       67042973     NR_110372  LINC01169
5   chr7  110728992      110847440  NM_001099658      LRRN3
6   chr7  110728992      110847440  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143120669      143248560     NR_110761  LOC102723769
1   chr11    7642981        7913977  NM_001256568       PPFIBP2
3   chr11    7642981        7913977  NM_001302826        CYB5R2
7   chr11    7642981        7913977     NM_153444         OR5P2
8   chr11    7642981        7913977     NM_153445         OR5P3
9   chr11    7642981        7913977     NM_198185         OVCH2
10  chr11    7642981        7913977     NR_027711        OR5E1P
11  chr11    7642981        7913977     NR_036678     LOC283299
12  chr11   89060972       90244279  NM_001105522      TRIM49D2
14  chr11   89060972       90244279  NM_001136486        TRIM64
15  chr11   89060972       90244279  NM_001143837          NOX4
16  chr11   89060972       90244279  NM_001143975        UBTFL1
17  chr11   89060972       90244279  NM_001144073       CHORDC1
18  chr11   89060972       90244279  NM_001164397       TRIM64B
19  chr11   89060972       90244279  NM_001195234       TRIM49C
20  chr11   89060972       90244279  NM_001206627      TRIM49D1
22  chr11   89060972       90244279  NM_001271942        TRIM77
27  chr11   89060972       90244279     NM_005467       NAALAD2
28  chr11   89060972       90244279     NM_020358        TRIM49
29  chr11   89060972       90244279     NM_153696        FOLH1B
30  chr11   89060972       90244279     NR_028346      TRIM53AP
32  chr11   89060972       90244279     NR_104190      DISC1FP1
34  chr14   27004516       27151798     NM_002515         NOVA1
36   chr7   63902034       64014645  NM_001130022        ZNF680
38   chr8    7218488        7470819  NM_001040705      DEFB107B
39   chr8    7218488        7470819  NM_001081551      DEFB103A
40   chr8    7218488        7470819  NM_001164457       ZNF705G
41   chr8    7218488        7470819  NM_001205266        DEFB4B
42   chr8    7218488        7470819  NM_001282478       PRR23D2
43   chr8    7218488        7470819  NM_001282479       PRR23D1
44   chr8    7218488        7470819     NM_058200       SPAG11B
48   chr8    7218488        7470819     NM_080389      DEFB104A
49   chr8    7218488        7470819     NM_152250      DEFB105A
50   chr8    7218488        7470819     NM_152251      DEFB106A
51   chr8    7218488        7470819     NR_046343      FAM90A7P
53   chr9   38971701       39261036     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12777818       13200660  NM_001009611    PRAMEF4
1    chr1   12777818       13200660  NM_001010889    PRAMEF6
2    chr1   12777818       13200660  NM_001010890    PRAMEF9
3    chr1   12777818       13200660  NM_001012276    PRAMEF8
4    chr1   12777818       13200660  NM_001013407    PRAMEF5
5    chr1   12777818       13200660  NM_001013631   HNRNPCL1
6    chr1   12777818       13200660  NM_001080830   PRAMEF12
7    chr1   12777818       13200660  NM_001099850   PRAMEF18
8    chr1   12777818       13200660  NM_001100631   PRAMEF22
9    chr1   12777818       13200660  NM_001103170    AADACL3
10   chr1   12777818       13200660  NM_001136561   HNRNPCL2
11   chr1   12777818       13200660  NM_001146181   HNRNPCL3
12   chr1   12777818       13200660  NM_001146344   PRAMEF11
13   chr1   12777818       13200660  NM_001294139    PRAMEF1
14   chr1   12777818       13200660  NM_001302551   HNRNPCL4
15   chr1   12777818       13200660  NM_001306072   PRAMEF26
16   chr1   12777818       13200660  NM_001310134   PRAMEF25
18   chr1   12777818       13200660     NM_023014    PRAMEF2
19   chr1   12777818       13200660     NM_152290   C1orf158
20   chr1   12777818       13200660     NR_111945  PRAMEF36P
22  chr16   68580188       68924638  NM_001305204      ZFP90
24  chr16   68580188       68924638  NM_001317184       CDH1
25  chr16   68580188       68924638  NM_001317195       CDH3
26  chr16   68580188       68924638     NM_024562     TANGO6
27  chr16   68580188       68924638     NR_106988  MIR7641-2
28   chr7    3380635        3822065     NM_152744       SDK1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   89240885       89346727     NR_047490  LINC00560
1  chr14   42089917       42545339  NM_001346175      LRFN5
2   chr4  121668305      121818610     NM_018699      PRDM5
3   chr7  110572093      110675603  NM_001244606     IMMP2L
5   chr7  110650086      110832632  NM_001099658      LRRN3
6   chr7  110650086      110832632  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   14925305       15123959     NM_015209       KAZN
2   chr13   63308692       63451725     NR_047029  LINC00448
5   chr13  113069599      113191023  NM_001286278    TUBGCP3
7   chr13  113069599      113191023     NM_145248     SPACA7
8    chr7   71518005       71622508  NM_001017440      CALN1
10   chr7  110567124      110779245  NM_001099658      LRRN3
11   chr7  110567124      110779245  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr19   33164057       33583176  NM_001105570    NUDT19
1   chr19   33164057       33583176  NM_001110822    TDRD12
2   chr19   33164057       33583176  NM_001300978    FAAP24
3   chr19   33164057       33583176     NM_014270    SLC7A9
4   chr19   33164057       33583176     NM_032139   ANKRD27
5   chr19   33164057       33583176     NM_032816     CEP89
6   chr19   33164057       33583176     NM_033103     RHPN2
7   chr19   33164057       33583176     NM_207391    RGS9BP
8   chr19   33164057       33583176     NR_135270   GPATCH1
9   chr20   14630439       14836591     NM_080676   MACROD2
10   chr7   14833220       15267504  NM_001004320      AGMO
11   chr7   14833220       15267504     NM_004080      DGKB,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  108396689      108562789     NM_006113      VAV3
1  chr1  108396689      108562789     NR_046653  VAV3-AS1
2  chr1  108396689      108562789     NR_107006   MIR7852
3  chr2   51014130       51141673  NM_001330082     NRXN1
4  chr4  169174909      169349934  NM_001012967    DDX60L
6  chr4  169174909      169349934     NM_017631     DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244960812      245099990  NM_001312871         COX20
2    chr1  244960812      245099990     NM_004501        HNRNPU
4    chr1  244960812      245099990     NR_132782      SNORA100
5   chr13   63165405       63279128     NR_047029     LINC00448
6   chr13   63328794       63485135     NR_047029     LINC00448
9   chr16   21468199       21625210  NM_001077180        METTL9
11  chr16   21468199       21625210     NR_002594      SLC7A5P2
12  chr16   21468199       21625210     NR_027155        SMG1P3
13  chr16   21468199       21625210     NR_049833     MIR3680-2
14  chr16   21468199       21625210     NR_110930  LOC101927814,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr3    7078411        7496735  NM_181874       GRM7
1  chr5   17672333       18170803  NR_134286  LOC646241,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   95808616       96043583  NM_001301829      ABCC4
2   chr7   93261108       93477241     NR_039796    MIR4652
3   chr9   39030529       39177464     NM_033655    CNTNAP3
4   chr9   41440309       41567376  NM_001113541  SPATA31A5
5   chr9   41440309       41567376     NM_015667  SPATA31A7
6   chr9   41440309       41567376     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11    7570213        7709991  NM_001256568        PPFIBP2
2   chr11    7570213        7709991  NM_001302826         CYB5R2
6   chr16    6747612        7062466  NM_001142334         RBFOX1
9   chr16   15131336       15248386  NM_001270767          NTAN1
10  chr16   15131336       15248386  NM_001285445         PDXDC1
14  chr16   15131336       15248386  NM_001301064           RRN3
16  chr16   15131336       15248386     NR_106775      MIR6511B1
17  chr16   15131336       15248386     NR_106965      MIR6511B2
18  chr16   15131336       15248386     NR_123721  PKD1P6-NPIPP1
20  chr16   15131336       15248386     NR_125434   LOC100505915
21   chr2  130610666      130801211     NM_032144          RAB6C
22   chr2  130610666      130801211     NR_026740      LOC389033
23   chr2  130610666      130801211     NR_026758         FAR2P1
24   chr2  130610666      130801211     NR_036537      RAB6C-AS1
25   chr2  130610666      130801211     NR_110285   LOC101927924
26   chr5  161129116      161370185     NM_000806         GABRA1
27   chr5  161129116      161370185     NM_000811         GABRA6
32   chr5  161129116      161370185     NR_126372      LINC01202,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   91935349       92089060  NM_001134419          CDC7
2   chr10   81494267       82966945     NM_000429         MAT1A
3   chr10   81494267       82966945  NM_001012973         PLAC9
4   chr10   81494267       82966945  NM_001128309       TSPAN14
5   chr10   81494267       82966945  NM_001145719        SH2D4B
6   chr10   81494267       82966945  NM_001243778       FAM213A
9   chr10   81494267       82966945  NM_001269053         DYDC1
10  chr10   81494267       82966945  NM_001270041         DYDC2
12  chr10   81494267       82966945  NM_001270367       TMEM254
15  chr10   81494267       82966945  NM_001278407        ANXA11
18  chr10   81494267       82966945     NM_003019         SFTPD
21  chr10   81494267       82966945     NR_002724         MBL1P
22  chr10   81494267       82966945     NR_027431   TMEM254-AS1
23  chr10   81494267       82966945     NR_029407     LOC642361
24  chr10   81494267       82966945     NR_033857       BMS1P21
25  chr10   81494267       82966945     NR_038464     LINC00857
26  chr10   81494267       82966945     NR_120611    NUTM2B-AS1
29  chr10   81494267       82966945     NR_120661  LOC101929574
30  chr10   81494267       82966945     NR_120662  LOC102723703
31  chr10   81494267       82966945     NR_136612  LOC100130698
33   chr8   58070375       58565930     NR_026772     LINC00588
34   chr8   58070375       58565930     NR_038235     LINC01606
35   chr8   58070375       58565930     NR_038874     LOC286177
36   chr8   58070375       58565930     NR_125818  LOC101929488,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11     695196         829344     NM_001004      RPLP2
1   chr11     695196         829344  NM_001042463     TMEM80
2   chr11     695196         829344  NM_001191060   SLC25A22
5   chr11     695196         829344  NM_001286606    CRACR2B
6   chr11     695196         829344  NM_001293167      PANO1
7   chr11     695196         829344  NM_001318824      PDDC1
8   chr11     695196         829344     NM_006755     TALDO1
9   chr11     695196         829344     NM_016564      CEND1
10  chr11     695196         829344     NM_020376     PNPLA2
11  chr11     695196         829344     NM_021008      DEAF1
12  chr11     695196         829344     NM_022772     EPS8L2
14  chr11     695196         829344     NM_145886      PIDD1
15  chr11     695196         829344     NR_002585    SNORA52
16  chr11     695196         829344     NR_126342  LOC171391,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr4   56429419       56777340  NM_001024924      EXOC1
1  chr4   56429419       56777340     NM_006681        NMU
2  chr4   56429419       56777340     NM_152401      PDCL2
3  chr4   56429419       56777340     NR_003935  LOC644145
5  chr5  146443505      146566668  NM_001271899    PPP2R2B,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr6    4292718        5824851  NM_001143970          CDYL
2   chr6    4292718        5824851  NM_001145115       PPP1R3G
3   chr6    4292718        5824851  NM_001164840         LYRM4
4   chr6    4292718        5824851  NM_001286132         RPP40
6   chr6    4292718        5824851  NM_001318872         FARS2
11  chr6    4292718        5824851     NR_037462       MIR3691
12  chr6    4292718        5824851     NR_106988     MIR7641-2
13  chr6    4292718        5824851     NR_110842  LOC101927950
14  chr6    4292718        5824851     NR_122107      KU-MEL-3
15  chr6    4292718        5824851     NR_125846  LOC101927972
16  chr6    4292718        5824851     NR_126015     LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   53077053       53701614  NM_001098512         PRKG1
2   chr10   53077053       53701614     NM_015235        CSTF2T
3   chr10   67897059       68172348  NM_001127384        CTNNA3
5   chr17   47925269       48034577  NM_001077503          TAC4
6   chr17   47925269       48034577  NM_001242791      FLJ45513
7    chr2   97176500       97578846  NM_001115016        KANSL3
8    chr2   97176500       97578846  NM_001122646       FAM178B
10   chr2   97176500       97578846  NM_001293083        FER1L5
11   chr2   97176500       97578846  NM_001319085        ARID5A
13   chr2   97176500       97578846  NM_001322354        LMAN2L
14   chr2   97176500       97578846     NM_016466       ANKRD39
16   chr2   97176500       97578846     NM_017623         CNNM3
17   chr2   97176500       97578846     NM_017789        SEMA4C
18   chr2   97176500       97578846     NM_020184         CNNM4
20   chr2   97176500       97578846     NM_144994       ANKRD23
21   chr2   97176500       97578846     NR_036074       MIR3127
23   chr2   97176500       97578846     NR_135564  LOC105373496,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   49121374       49253166  NM_001302082     BEND5
1    chr1   49121374       49253166  NM_001323575     AGBL4
2   chr11    7637238        7738145  NM_001256568   PPFIBP2
4   chr11    7637238        7738145  NM_001302826    CYB5R2
8   chr11    7637238        7738145     NM_198185     OVCH2
9    chr5   23984485       24179758     NR_131245   C5orf17
10   chr9   28568162       28701962  NM_001258282    LINGO2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   19660099       19866419  NM_001142308    MALRD1
1    chr8    6774040        6922767  NM_001302265    DEFA1B
2    chr8    6774040        6922767     NM_001925     DEFA4
3    chr8    6774040        6922767     NM_001926     DEFA6
4    chr8    6774040        6922767     NM_004084     DEFA1
6    chr8    6774040        6922767     NM_005217     DEFA3
7    chr8    6774040        6922767     NM_021010     DEFA5
8    chr8    6774040        6922767     NR_029386   DEFA10P
9    chr8    6774040        6922767     NR_036686    DEFT1P
11   chr8    6774040        6922767     NR_073407    DEFA8P
12   chr8    6774040        6922767     NR_073408    DEFA9P
13   chr8    6774040        6922767     NR_073421   DEFA11P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   81628771       81768149  NM_001256430         STON2
1   chr14   81628771       81768149  NM_001278940        GTF2A1
4   chr14   81628771       81768149     NR_003021       SNORA79
5   chr14   81628771       81768149     NR_135252  LOC101928504
6    chr2   97215816       97766938  NM_001115016        KANSL3
7    chr2   97215816       97766938  NM_001122646       FAM178B
9    chr2   97215816       97766938  NM_001293083        FER1L5
10   chr2   97215816       97766938  NM_001319085        ARID5A
12   chr2   97215816       97766938  NM_001320849        FAHD2B
13   chr2   97215816       97766938  NM_001322354        LMAN2L
14   chr2   97215816       97766938     NM_016466       ANKRD39
16   chr2   97215816       97766938     NM_017623         CNNM3
17   chr2   97215816       97766938     NM_017789        SEMA4C
18   chr2   97215816       97766938     NM_020184         CNNM4
20   chr2   97215816       97766938     NM_144994       ANKRD23
22   chr2   97215816       97766938     NR_036074       MIR3127
24   chr2   97215816       97766938     NR_110209  LOC101927053,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11   21339920       21507899  NM_001288713          NELL1
1   chr16   15222835       15379324  NM_001285449         PDXDC1
3   chr16   15222835       15379324     NR_037466      MIR3180-4
4   chr16   15222835       15379324     NR_106775      MIR6511B1
5   chr16   15222835       15379324     NR_106965      MIR6511B2
6   chr16   15222835       15379324     NR_123721  PKD1P6-NPIPP1
8    chr2  193634664      193787930     NR_002769         PCGEM1
9   chr21   36077937       37495295  NM_001001890          RUNX1
10  chr21   36077937       37495295  NM_001007261          SETD4
12  chr21   36077937       37495295  NM_001317009          CLIC6
14  chr21   36077937       37495295     NM_001757           CBR1
15  chr21   36077937       37495295     NR_024351      LINC00160
16  chr21   36077937       37495295     NR_026812      RUNX1-IT1
17  chr21   36077937       37495295     NR_030414         MIR802
18  chr21   36077937       37495295     NR_038885      LINC01426
20  chr21   36077937       37495295     NR_040084   LOC100133286
22  chr21   36077937       37495295     NR_073512   LOC100506403
23  chr21   36077937       37495295     NR_110418   LOC101928269
24  chr21   36077937       37495295     NR_110419      LINC01436
25  chr21   44797541       44949643  NM_001320643   LOC102724428
26  chr21   44797541       44949643     NM_007031         HSF2BP
27  chr21   44797541       44949643     NM_173354           SIK1
28  chr21   44797541       44949643     NR_026863      LINC00313
29  chr21   44797541       44949643     NR_026960      LINC00319
30  chr21   44797541       44949643     NR_136540   LOC102724354
31   chr9   44291902       44398814     NR_121564   LOC101927827,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143664439      144205484  NM_001123068       PPIAL4G
1    chr1  143664439      144205484  NM_001278267        NBPF20
2    chr1  143664439      144205484  NM_001287385        FAM72C
3    chr1  143664439      144205484  NM_001345942        FAM72D
7    chr1  143664439      144205484     NR_104014     LINC01138
8    chr1  143664439      144205484     NR_106967       MIR6077
9    chr1  143664439      144205484     NR_111930  LOC100132057
11  chr11    7556810        7691555  NM_001256568       PPFIBP2
13  chr11    7556810        7691555  NM_001302826        CYB5R2
17  chr21   44824851       44956339  NM_001320643  LOC102724428
18  chr21   44824851       44956339     NM_007031        HSF2BP
19  chr21   44824851       44956339     NM_173354          SIK1
20  chr21   44824851       44956339     NR_026863     LINC00313
21  chr21   44824851       44956339     NR_026960     LINC00319
22  chr21   44824851       44956339     NR_136540  LOC102724354
23   chr7  110633608      110746398  NM_001099658         LRRN3
24   chr7  110633608      110746398  NM_001244606        IMMP2L, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  241501499      241830801     NM_000143        FH
1  chr1  241501499      241830801  NM_001282773      RGS7
2  chr1  241501499      241830801     NM_001821      CHML
3  chr1  241501499      241830801     NM_003679       KMO
4  chr1  241501499      241830801     NM_014322      OPN3
5  chr1  241501499      241830801     NM_144625     WDR64
6  chr3    2222357        2355373  NM_001206955     CNTN4
8  chr5   23792976       23998051     NR_131245   C5orf17, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67593011       67697684  NM_001127384    CTNNA3
2   chr11   83958226       84059301  NM_001142699      DLG2
6    chr3   85428209       85535583  NM_001167675     CADM2
7    chr3   85428209       85535583     NR_049870   MIR5688
8    chr6  162870575      163225152  NM_001080378     PACRG
10   chr6  162870575      163225152     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  143727744      143900848  NM_001123068    PPIAL4G
1    chr1  143727744      143900848  NM_001287385     FAM72C
2    chr1  143727744      143900848  NM_001345942     FAM72D
5    chr1  143727744      143900848     NR_104014  LINC01138
7   chr12   16400580       16874586  NM_001001395       LMO3
8   chr12   16400580       16874586  NM_001170798    SLC15A5
13  chr12   16400580       16874586  NM_001267598      MGST1
19  chr12   27199800       27306712  NM_001080406   C12orf71
20  chr16    7042632        7220587  NM_001142334     RBFOX1
23  chr19   21424368       21539322  NM_001297560     ZNF708,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr4   91146337       91258399  NM_001145065    CCSER1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4186345        4446674  NM_001005161        OR52B4
1   chr11    4186345        4446674     NM_003141        TRIM21
2   chr11    4186345        4446674     NR_047550  LOC100506082
3    chr2   63152038       63291539  NM_001142614         EHBP1
5    chr2   63152038       63291539  NM_001199770          OTX1
7    chr2   63152038       63291539     NR_027069  LOC100132215
10   chr2  133601924      133840837     NM_207363        NCKAP5
11   chr2  133601924      133840837     NR_135572  LOC101928185
12   chr9   43075948       43205131  NM_001012419     ANKRD20A3
13   chr9   43075948       43205131  NM_001012421     ANKRD20A2
14   chr9   43075948       43205131     NR_027472     LOC642929,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr12   71573764       72084462  NM_001277227            LGR5
1   chr12   71573764       72084462     NM_018279          TMEM19
2   chr12   71573764       72084462     NM_031435           THAP2
3   chr12   71573764       72084462     NM_144982          ZFC3H1
4   chr15   20685705       21030312  NM_001145004        GOLGA6L6
5   chr15   20685705       21030312     NR_027411        GOLGA8CP
6   chr15   20685705       21030312     NR_027992          NBEAP1
7   chr15   20685705       21030312     NR_036432         HERC2P3
8   chr15   43959929       44096264  NM_001018108           SERF2
12  chr15   43959929       44096264  NM_001199885            HYPK
13  chr15   43959929       44096264  NM_001258031         SERINC4
14  chr15   43959929       44096264  NM_001321927          CKMT1A
17  chr15   43959929       44096264     NM_005313           PDIA3
18  chr15   43959929       44096264     NM_025165            ELL3
19  chr15   43959929       44096264     NR_002318      CATSPER2P1
20  chr15   43959929       44096264     NR_031695         MIR1282
21  chr15   43959929       44096264     NR_037673  SERF2-C15ORF63
23  chr21   28107081       29113278     NM_006988         ADAMTS1
24  chr21   28107081       29113278     NM_007038         ADAMTS5
25  chr21   28107081       29113278     NR_024357       LINC00113
26  chr21   28107081       29113278     NR_039916         MIR4759, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  190054446      190212410  NM_001317188        BRINP3
2   chr16   21718862       21934995  NM_001161683          OTOA
3   chr16   21718862       21934995  NM_001310148        NPIPB4
6   chr16   21718862       21934995     NR_003370        RRN3P1
7   chr16   29527871       29656949     NR_049833     MIR3680-2
8   chr16   29527871       29656949     NR_135305        SMG1P2
10   chr4  130577977      131142499     NR_110753  LOC101927282,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr2   63154139       63263863  NM_001142614     EHBP1
3   chr6  154038021      154581311  NM_001008503     OPRM1
5   chr6  154038021      154581311  NM_001130699    IPCEF1
16  chr9    9992248       10138117     NM_002839     PTPRD,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr15   99941889      100370774  NM_001130928              MEF2A
1   chr15   99941889      100370774  NM_001284417             LYSMD4
4   chr15   99941889      100370774     NR_003260            DNM1P46
5   chr15   99941889      100370774     NR_135737          LOC400464
6   chr17   63467021       63795828  NM_001037325             CEP112
9   chr17   63467021       63795828     NM_004655              AXIN2
10  chr22   17048928       17151048     NM_014406             CCT8L2
11  chr22   17048928       17151048     NR_001591             TPTEP1
12  chr22   17048928       17151048     NR_040115  ANKRD62P1-PARP4P3
13   chr6  162523077      162648622     NM_013988              PARK2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   68550901       68838797  NM_001305204      ZFP90
2  chr16   68550901       68838797  NM_001317184       CDH1
3  chr16   68550901       68838797  NM_001317195       CDH3
4  chr16   68550901       68838797     NR_106988  MIR7641-2
5   chr5  109820629      110313837  NM_001039763    TMEM232
6   chr5  109820629      110313837  NM_001303250   SLC25A46
8   chr5  109820629      110313837     NR_031644   MIR548F3
9   chr9   88361092       88475344     NR_029410  LOC389765,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr22   19910730       20224739     NM_000754       COMT
3   chr22   19910730       20224739  NM_001190326      DGCR8
4   chr22   19910730       20224739  NM_001243537    CCDC188
5   chr22   19910730       20224739  NM_001278639     RANBP1
8   chr22   19910730       20224739  NM_001282512     TXNRD2
9   chr22   19910730       20224739  NM_001283116     TANGO2
12  chr22   19910730       20224739     NM_001670      ARVCF
15  chr22   19910730       20224739     NM_013373     ZDHHC8
16  chr22   19910730       20224739     NM_022727     TRMT2A
17  chr22   19910730       20224739     NR_026919  LINC00896
18  chr22   19910730       20224739     NR_029706     MIR185
19  chr22   19910730       20224739     NR_031706    MIR1306
20  chr22   19910730       20224739     NR_037412    MIR3618
21  chr22   19910730       20224739     NR_038460  LOC284865
22  chr22   19910730       20224739     NR_039918    MIR4761
23  chr22   19910730       20224739     NR_106874    MIR6816
24   chr7   71462474       71768622  NM_001017440      CALN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108407328      108579011     NM_006113          VAV3
1    chr1  108407328      108579011     NR_046653      VAV3-AS1
2    chr1  108407328      108579011     NR_107006       MIR7852
3   chr15   99983652      100138082     NM_005587         MEF2A
4    chr7  143072332      143215939  NM_001322263  LOC100507507
5    chr7  143072332      143215939     NM_003461           ZYX
6    chr7  143072332      143215939     NM_005232         EPHA1
7    chr7  143072332      143215939     NM_176883       TAS2R41
8    chr7  143072332      143215939     NM_177437       TAS2R60
9    chr7  143072332      143215939     NR_033897     EPHA1-AS1
10   chr7  143072332      143215939     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  102679154      102794371     NM_002422       MMP3
1   chr11  102679154      102794371     NM_002426      MMP12
2   chr11  102679154      102794371     NR_038390     WTAPP1
3   chr14   38001437       39344546     NM_001049      SSTR1
4   chr14   38001437       39344546  NM_001195296     MIPOL1
5   chr14   38001437       39344546  NM_001310135       TTC6
6   chr14   38001437       39344546     NM_004496      FOXA1
7   chr14   38001437       39344546     NM_175060    CLEC14A
8   chr14   38001437       39344546     NR_039982  LINC00639
9   chr14   38001437       39344546     NR_135286  LINC00517
10   chr4  169268676      169389243  NM_001012967     DDX60L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    1118157        1289767  NM_001304359        MUC5AC
1   chr11    1118157        1289767     NM_002458         MUC5B
2   chr11    1118157        1289767     NR_106802       MIR6744
3   chr17   47812678       48067745  NM_001077503          TAC4
4   chr17   47812678       48067745  NM_001199158          KAT7
5   chr17   47812678       48067745  NM_001242791      FLJ45513
6   chr17   47812678       48067745     NM_001934          DLX4
7   chr17   47812678       48067745     NM_005220          DLX3
8   chr17   47812678       48067745     NM_030802       FAM117A
10  chr21   29400331       29525091     NR_126010     LOC284825
12  chr21   29400331       29525091     NR_126012  LOC101927973
13   chr7   80046778       80170884  NM_001102386         GNAT3
14   chr9   41840080       41968639     NR_003670        FGF7P3
15   chr9   41840080       41968639     NR_015363         GLIDR,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   86713179       86876680  NM_001168724    TMEM135
1   chr2  186981163      187385955     NM_018471     ZC3H15
2   chr3    2302435        2416231  NM_001206955      CNTN4
4   chr4   94145505       94256464     NM_001510      GRID2
5   chr9   15004470       15114282     NR_003920  LOC389705
6   chr9   30392148       30505871     NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   56526248       56628847  NM_001142770     PCDH15
3   chr11   48430477       50278367  NM_001001955     OR4C13
4   chr11   48430477       50278367  NM_001005270     OR4C12
5   chr11   48430477       50278367  NM_001005512     OR4A47
6   chr11   48430477       50278367  NM_001193472      FOLH1
7   chr11   48430477       50278367  NM_001206626    TRIM49B
8   chr11   48430477       50278367  NM_001206631    TRIM64C
9   chr11   48430477       50278367     NR_003034  LOC441601
10  chr11   48430477       50278367     NR_027044  LOC440040
11  chr13   63138993       63373736     NR_047029  LINC00448
14  chr15   20996748       21106024  NM_001277303     POTEB2
15  chr15   20996748       21106024     NM_207355     POTEB3
16  chr15   20996748       21106024     NR_036062  MIR3118-2
18   chr5   96660630       96935538     NR_105028  LINC01340,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr8  103913599      104025900     NR_126339  AZIN1-AS1
1  chr9  116345430      116464056  NM_001276260       RGS3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    5438876        5865449  NM_001001913        OR52N1
1   chr11    5438876        5865449  NM_001001922        OR52N5
2   chr11    5438876        5865449  NM_001003819  TRIM6-TRIM34
3   chr11    5438876        5865449  NM_001003827        TRIM34
4   chr11    5438876        5865449  NM_001004754        OR51I2
5   chr11    5438876        5865449  NM_001004757        OR51Q1
6   chr11    5438876        5865449  NM_001005162        OR52B6
7   chr11    5438876        5865449  NM_001005163        OR52D1
8   chr11    5438876        5865449  NM_001005167        OR52E6
9   chr11    5438876        5865449  NM_001005174        OR52N2
10  chr11    5438876        5865449  NM_001005175        OR52N4
11  chr11    5438876        5865449  NM_001005180        OR56B1
12  chr11    5438876        5865449  NM_001005288        OR51I1
13  chr11    5438876        5865449  NM_001005289        OR52H1
14  chr11    5438876        5865449  NM_001005567        OR51B5
15  chr11    5438876        5865449  NM_001198644         TRIM6
16  chr11    5438876        5865449     NM_006074        TRIM22
17  chr11    5438876        5865449     NM_017481        UBQLN3
19  chr11    5438876        5865449     NM_033034         TRIM5
22  chr11    5438876        5865449     NM_145053        UBQLNL
24  chr11    5438876        5865449     NR_133006        OLFM5P
25   chr3    1154181        1608154  NM_001289081         CNTN6
26   chr4   98309714       98602952     NM_174952         STPG2
27   chr4   98309714       98602952     NR_102713     STPG2-AS1
28   chr8  135656001      135758061  NM_001174158          ZFAT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   86127852       86434040     NM_017953        ZNHIT6
1    chr1   86127852       86434040     NM_152890       COL24A1
2   chr11   60315675       60530797  NM_001310141        MS4A18
3   chr11   60315675       60530797     NM_031457         MS4A8
4   chr11   60315675       60530797     NM_152717        MS4A15
5   chr11   60315675       60530797     NR_026946     LINC00301
6   chr16   68602385       68873381  NM_001305204         ZFP90
7   chr16   68602385       68873381  NM_001317184          CDH1
8   chr16   68602385       68873381  NM_001317195          CDH3
9   chr16   68602385       68873381     NR_106988     MIR7641-2
10   chr5  109848538      110519027  NM_001039763       TMEM232
11   chr5  109848538      110519027  NM_001303250      SLC25A46
12   chr5  109848538      110519027     NM_033035          TSLP
15   chr5  109848538      110519027     NM_139281         WDR36
16   chr5  109848538      110519027     NR_031644      MIR548F3
18   chr9   28527302       28645309  NM_001258282        LINGO2
20   chr9   41896680       43321946  NM_001012419     ANKRD20A3
22   chr9   41896680       43321946  NM_001012421     ANKRD20A2
24   chr9   41896680       43321946     NM_199244       FOXD4L4
25   chr9   41896680       43321946     NR_003670        FGF7P3
26   chr9   41896680       43321946     NR_015363         GLIDR
27   chr9   41896680       43321946     NR_026558        AQP7P3
28   chr9   41896680       43321946     NR_027472     LOC642929
29   chr9   41896680       43321946     NR_046175     LOC286297
30   chr9   41896680       43321946     NR_121570  LOC101928381
31   chr9   41896680       43321946     NR_121572      GXYLT1P3
35   chr9   41896680       43321946     NR_126048  LOC102724238
36   chr9   41896680       43321946     NR_126049     LOC554249
37   chr9   41896680       43321946     NR_135597  LOC101928195
38   chr9   41896680       43321946     NR_136299  LOC101929583
39   chr9   41896680       43321946     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  153042666      153154116  NM_001014291        SPRR2G
1    chr1  153042666      153154116  NM_001014450        SPRR2F
2    chr1  153042666      153154116  NM_001017418        SPRR2B
3    chr1  153042666      153154116  NM_001024209        SPRR2E
4    chr1  153042666      153154116     NR_003062        SPRR2C
5    chr1  153042666      153154116     NR_110685  LOC101928009
6   chr13   40338406       40465417  NM_001145079          COG6
7   chr16   78949700       79412869     NM_016373          WWOX
8    chr2  153064573      153357678     NM_052905         FMNL2
9    chr6  162861333      162988559     NM_013988         PARK2
10   chr7   63839409       63990889  NM_001130022        ZNF680
12   chr7   63839409       63990889     NR_029404       YWHAEP1
13   chr7  110525176      110705160  NM_001244606        IMMP2L
15   chr9  119705545      119886740     NM_014010         ASTN2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30278157       30490802  NM_001282472       GOLGA8J
1   chr15   30278157       30490802     NR_026771  DKFZP434L187
2   chr15   30278157       30490802     NR_026859        ULK4P3
3   chr15   30278157       30490802     NR_033933       GOLGA8T
4    chr2   51239728       51385323  NM_001330079         NRXN1
7    chr2   51239728       51385323     NR_135237     LOC730100
8   chr22   19898214       20060350     NM_000754          COMT
11  chr22   19898214       20060350  NM_001282512        TXNRD2
12  chr22   19898214       20060350  NM_001283116        TANGO2
15  chr22   19898214       20060350     NM_001670         ARVCF
18  chr22   19898214       20060350     NR_029706        MIR185
19  chr22   19898214       20060350     NR_039918       MIR4761
20  chr22   32384583       32675653     NM_000343        SLC5A1
21  chr22   32384583       32675653  NM_001010859      C22orf42
22  chr22   32384583       32675653  NM_001098527         RFPL2
27  chr22   32384583       32675653     NM_014227        SLC5A4
28  chr22   32384583       32675653     NR_040114       AP1B1P1
29   chr6  146478786      146636821  NM_001278064          GRM1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr5  150074169      150205139  NM_001135643     DCTN4
2  chr5  150074169      150205139     NM_018047     RBM22
3  chr5  150074169      150205139     NM_032947     SMIM3
4  chr9   28149876       28306404  NM_001258282    LINGO2
6  chr9   38984333       39167844     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12850739       14034554  NM_001006624       PDPN
1    chr1   12850739       14034554  NM_001009611    PRAMEF4
2    chr1   12850739       14034554  NM_001010847     LRRC38
3    chr1   12850739       14034554  NM_001010889    PRAMEF6
5    chr1   12850739       14034554  NM_001010890    PRAMEF9
6    chr1   12850739       14034554  NM_001012276    PRAMEF8
9    chr1   12850739       14034554  NM_001013407    PRAMEF5
11   chr1   12850739       14034554  NM_001013631   HNRNPCL1
12   chr1   12850739       14034554  NM_001024661   PRAMEF14
14   chr1   12850739       14034554  NM_001039361   PRAMEF10
16   chr1   12850739       14034554  NM_001098376   PRAMEF15
18   chr1   12850739       14034554  NM_001099790   PRAMEF19
20   chr1   12850739       14034554  NM_001099850   PRAMEF18
22   chr1   12850739       14034554  NM_001099851   PRAMEF17
24   chr1   12850739       14034554  NM_001099852   PRAMEF20
26   chr1   12850739       14034554  NM_001100631   PRAMEF22
28   chr1   12850739       14034554  NM_001135610      PRDM2
29   chr1   12850739       14034554  NM_001136561   HNRNPCL2
30   chr1   12850739       14034554  NM_001146181   HNRNPCL3
31   chr1   12850739       14034554  NM_001146344   PRAMEF11
32   chr1   12850739       14034554  NM_001291381  PRAMEF33P
34   chr1   12850739       14034554  NM_001294139    PRAMEF1
35   chr1   12850739       14034554  NM_001300891   PRAMEF27
38   chr1   12850739       14034554  NM_001302551   HNRNPCL4
39   chr1   12850739       14034554  NM_001306072   PRAMEF26
40   chr1   12850739       14034554  NM_001310134   PRAMEF25
44   chr1   12850739       14034554     NM_023014    PRAMEF2
46   chr1   12850739       14034554     NR_111945  PRAMEF36P
48  chr15   28696986       28893961     NR_033351    GOLGA8F
49  chr15   28696986       28893961     NR_033353    GOLGA8G
50  chr15   28696986       28893961     NR_039734  MIR4509-3
51   chr7  110546416      110778499  NM_001099658      LRRN3
52   chr7  110546416      110778499  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81488112       81741474     NM_003019         SFTPD
1   chr10   81488112       81741474     NR_002724         MBL1P
2   chr10   81488112       81741474     NR_029407     LOC642361
3   chr10   81488112       81741474     NR_033857       BMS1P21
4   chr10   81488112       81741474     NR_120611    NUTM2B-AS1
7   chr11  131423085      131580696  NM_001048209           NTM
8   chr11  131423085      131580696     NR_126159       NTM-AS1
9    chr2   62154807       62260426  NM_001321781        COMMD1
11   chr3  131307418      131423513  NM_001289112         CPNE4
14   chr9   44286808       44399983     NR_121564  LOC101927827,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr7   64035791       64177370  NM_001282360        ZNF107
1  chr7   64035791       64177370     NR_033245     LOC641746
2  chr7   64035791       64177370     NR_077227  LOC100128885
4  chr7   64035791       64177370     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   59372005       59520385  NM_001005324     OR10V1
1   chr11   59372005       59520385     NM_002556       OSBP
2   chr11   59372005       59520385     NM_152716      PATL1
3   chr11   59372005       59520385     NR_045005    OR10V2P
4   chr19   33778846       34438974     NM_000285       PEPD
5   chr19   33778846       34438974  NM_001127895      CHST8
7   chr19   33778846       34438974  NM_001129994     KCTD15
8   chr19   33778846       34438974  NM_001252296      CEBPG
9   chr19   33778846       34438974  NM_001285829      CEBPA
12  chr19   33778846       34438974     NR_026887  CEBPA-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   87378315       87489184  NM_001134492     HS2ST1
1    chr1   87378315       87489184     NM_004261    SELENOF
3   chr11  134148516      134347966  NM_001080407     GLB1L3
4   chr11  134148516      134347966     NM_054025     B3GAT1
5   chr11  134148516      134347966     NM_138342     GLB1L2
6   chr11  134148516      134347966     NR_033852  LOC283177
7    chr5   85212193       85881723     NR_003719    NBPF22P
8    chr9   14940812       15530851  NM_001039697     SNAPC3
9    chr9   14940812       15530851  NM_001128217      PSIP1
10   chr9   14940812       15530851  NM_001168339     TTC39B
14   chr9   14940812       15530851     NR_003920  LOC389705,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   21830970       22024370  NM_001164579  C16orf52
1  chr16   21830970       22024370  NM_001310148    NPIPB4
2  chr16   21830970       22024370     NM_003366    UQCRC2
3  chr16   21830970       22024370     NM_173806     PDZD9
4  chr20   14646383       14768222     NM_080676   MACROD2
5   chr4   94103636       94424489     NM_001510     GRID2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  165250817      165494095  NM_001174069      LMX1A
1   chr1  165250817      165494095  NM_001256571       RXRG
4   chr1  165250817      165494095     NR_026744  LOC400794
6  chr10   67710161       68021474  NM_001127384     CTNNA3
8  chr12   72620315       72748412     NM_013381      TRHDE
9  chr12   72620315       72748412     NR_026836  TRHDE-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr12  130287374      130405747     NM_133448   TMEM132D
1  chr13   71709019       72066773     NM_080759      DACH1
2  chr13   71709019       72066773     NR_047699  LINC00348
3  chr16   68534855       68775924  NM_001305204      ZFP90
5  chr16   68534855       68775924  NM_001317184       CDH1
6  chr16   68534855       68775924  NM_001317195       CDH3
7   chr6  162543245      162644321     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67971051       68112164  NM_001127384        CTNNA3
2   chr16   21666345       22100968  NM_001077180        METTL9
3   chr16   21666345       22100968  NM_001161683          OTOA
4   chr16   21666345       22100968  NM_001164579      C16orf52
6   chr16   21666345       22100968  NM_001310148        NPIPB4
7   chr16   21666345       22100968     NM_003366        UQCRC2
10  chr16   21666345       22100968     NM_173806         PDZD9
11  chr16   21666345       22100968     NR_003370        RRN3P1
12  chr17   78123149       78549029     NM_000199          SGSH
13  chr17   78123149       78549029  NM_001164637         ENDOV
15  chr17   78123149       78549029  NM_001166349      SLC26A11
16  chr17   78123149       78549029  NM_001256071        RNF213
17  chr17   78123149       78549029  NM_001257970        CARD14
18  chr17   78123149       78549029     NM_002522         NPTX1
19  chr17   78123149       78549029     NM_020761         RPTOR
23  chr17   78123149       78549029     NR_029376  LOC100294362
24  chr17   78123149       78549029     NR_039883       MIR4730
26   chr2   50792699       51303397  NM_001330079         NRXN1
29   chr2   50792699       51303397     NR_130470       MIR8485
30   chr2   50792699       51303397     NR_135237     LOC730100
31   chr7  110606078      110758538  NM_001099658         LRRN3
32   chr7  110606078      110758538  NM_001244606        IMMP2L
34   chr9   39096556       39263711     NM_033655       CNTNAP3
35   chr9   41883758       42326354     NR_003670        FGF7P3
36   chr9   41883758       42326354     NR_015363         GLIDR
39   chr9   41883758       42326354     NR_126048  LOC102724238
40   chr9   41883758       42326354     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   42051062       42327256  NM_001346175         LRFN5
1    chr4   88565374       89982732     NM_000297          PKD2
2    chr4   88565374       89982732     NM_000582          SPP1
3    chr4   88565374       89982732  NM_001184694          MEPE
4    chr4   88565374       89982732  NM_001257386         ABCG2
5    chr4   88565374       89982732  NM_001265580        FAM13A
7    chr4   88565374       89982732  NM_001318505         HERC3
8    chr4   88565374       89982732     NM_004407          DMP1
10   chr4   88565374       89982732     NM_004967          IBSP
13   chr4   88565374       89982732     NM_016323         HERC5
14   chr4   88565374       89982732     NM_017912         HERC6
16   chr4   88565374       89982732     NM_032906         PYURF
17   chr4   88565374       89982732     NM_152542         PPM1K
18   chr4   88565374       89982732     NM_153757        NAP1L5
19   chr4   88565374       89982732     NR_002806    FAM13A-AS1
20   chr4   88565374       89982732     NR_134237  LOC105369192
22   chr4   88565374       89982732     NR_134663  LOC101929134,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr12   72709189       72895040  NM_013381      TRHDE
1   chr9   14921600       15047762  NR_003920  LOC389705,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56457991       56639101  NM_001142770        PCDH15
3   chr15   28528970       29026810  NM_001282468       GOLGA8M
4   chr15   28528970       29026810     NM_004667         HERC2
5   chr15   28528970       29026810     NR_026589       WHAMMP2
6   chr15   28528970       29026810     NR_033351       GOLGA8F
8   chr15   28528970       29026810     NR_033353       GOLGA8G
10  chr15   28528970       29026810     NR_036443       HERC2P9
11  chr15   28528970       29026810     NR_039734     MIR4509-3
13  chr22   17176639       17433080     NM_175878          XKR3
14  chr22   17176639       17433080     NR_003607       HSFY1P1
15  chr22   17176639       17433080     NR_134584  LOC101929350
16   chr3  109859362      111607883  NM_001134437        PHLDB2
18   chr3  109859362      111607883  NM_001243286       NECTIN3
20   chr3  109859362      111607883  NM_001318889          CD96
21   chr3  109859362      111607883     NM_024508         ZBED2
23   chr3  109859362      111607883     NM_153268        PLCXD2
25   chr3  109859362      111607883     NR_045114     PVRL3-AS1
26   chr3  109859362      111607883     NR_046733    PLCXD2-AS1
28   chr4   69177724       69891029  NM_001031732        YTHDC1
29   chr4   69177724       69891029     NM_001075       UGT2B10
31   chr4   69177724       69891029     NM_001076       UGT2B15
32   chr4   69177724       69891029     NM_001077       UGT2B17
33   chr4   69177724       69891029     NM_014058     TMPRSS11E
34   chr4   69177724       69891029     NM_024743        UGT2A3
35   chr5  121009524      123671729     NM_000943          PPIC
36   chr5  121009524      123671729  NM_001136239         PRDM6
37   chr5  121009524      123671729  NM_001166226        CEP120
38   chr5  121009524      123671729  NM_001178102           LOX
39   chr5  121009524      123671729  NM_001195535  LOC100505841
40   chr5  121009524      123671729  NM_001270572       CSNK1G3
44   chr5  121009524      123671729     NM_003100          SNX2
45   chr5  121009524      123671729     NM_005460        SNCAIP
46   chr5  121009524      123671729     NM_014035         SNX24
47   chr5  121009524      123671729     NM_152546        SRFBP1
48   chr5  121009524      123671729     NM_177478          FTMT
49   chr5  121009524      123671729     NM_207317        ZNF474
50   chr5  121009524      123671729     NR_051996      MGC32805
51   chr5  121009524      123671729     NR_109881  LOC101927379
52   chr5  121009524      123671729     NR_125774     LINC01170
55   chr5  121009524      123671729     NR_134281  LOC101927357,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16    8621521        8753815  NM_001146336   TMEM114
1  chr16    8621521        8753815     NM_024109   METTL22
2   chr7  110547247      110667814  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81443368       81774702  NM_001278495        NUTM2B
1   chr10   81443368       81774702     NM_003019         SFTPD
2   chr10   81443368       81774702     NR_002724         MBL1P
3   chr10   81443368       81774702     NR_027512       BEND3P3
4   chr10   81443368       81774702     NR_029407     LOC642361
5   chr10   81443368       81774702     NR_033857       BMS1P21
6   chr10   81443368       81774702     NR_120611    NUTM2B-AS1
9   chr11   40662410       40826775  NM_001258419        LRRC4C
10  chr16   12360069       12591848     NM_032167         SNX29
11  chr19   47854496       47970173  NM_001009813         MEIS3
14  chr19   47854496       47970173     NM_014681         DHX34
15  chr19   47854496       47970173     NM_015063        SLC8A2
16   chr9   67117558       67369791     NR_002817        AQP7P1
17   chr9   67117558       67369791     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   16625566       16737583  NM_001114600      SZRD1
1    chr1   16625566       16737583     NM_018994     FBXO42
2    chr1   16625566       16737583     NM_198546    SPATA21
3   chr11   48253753       48366037  NM_001004702      OR4C3
4   chr11   48253753       48366037  NM_001004725      OR4S1
5   chr11   48253753       48366037  NM_001004726      OR4X1
6   chr11   48253753       48366037  NM_001004727      OR4X2
7   chr15   28674118       28940780     NR_033351    GOLGA8F
8   chr15   28674118       28940780     NR_033353    GOLGA8G
9   chr15   28674118       28940780     NR_036443    HERC2P9
10  chr15   28674118       28940780     NR_039734  MIR4509-3
11  chr16   68576887       68678129  NM_001305204      ZFP90
13   chr8  100561360      100734529     NM_017890     VPS13B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245024902      245510162  NM_001143943        EFCAB2
2    chr1  245024902      245510162     NM_004501        HNRNPU
3    chr1  245024902      245510162     NM_018012        KIF26B
5    chr1  245024902      245510162     NR_111907  LOC101928068
6   chr14   45493878       45841741  NM_001308120       FAM179B
7   chr14   45493878       45841741  NM_001308133         FANCM
9   chr14   45493878       45841741     NM_002013         FKBP3
10  chr14   45493878       45841741     NM_017922        PRPF39
11  chr14   45493878       45841741     NM_018353      MIS18BP1
12  chr14   45493878       45841741     NR_003691      SNORD127
13   chr2   51976081       52400000     NR_135237     LOC730100
14   chr8    6725415        6944536  NM_001302265        DEFA1B
15   chr8    6725415        6944536     NM_001925         DEFA4
16   chr8    6725415        6944536     NM_001926         DEFA6
17   chr8    6725415        6944536     NM_004084         DEFA1
19   chr8    6725415        6944536     NM_005217         DEFA3
20   chr8    6725415        6944536     NM_005218         DEFB1
21   chr8    6725415        6944536     NM_021010         DEFA5
22   chr8    6725415        6944536     NR_029386       DEFA10P
23   chr8    6725415        6944536     NR_036686        DEFT1P
25   chr8    6725415        6944536     NR_073407        DEFA8P
26   chr8    6725415        6944536     NR_073408        DEFA9P
27   chr8    6725415        6944536     NR_073421       DEFA11P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144740281      145023120  NM_001002810       PDE4DIP
7    chr1  144740281      145023120  NM_001277444         NBPF9
8    chr1  144740281      145023120  NM_001278267        NBPF20
10   chr1  144740281      145023120     NR_102405         NBPF8
11  chr13   86265301       86512789     NM_032229       SLITRK6
12  chr16   21543008       21724417  NM_001077180        METTL9
13  chr16   21543008       21724417  NM_001161683          OTOA
15  chr16   21543008       21724417     NM_005849         IGSF6
18  chr16   21543008       21724417     NR_110930  LOC101927814,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63369843       63486006     NR_047029     LINC00448
3   chr15   30249459       30662575  NM_001282472       GOLGA8J
4   chr15   30249459       30662575  NM_001301025          TJP1
5   chr15   30249459       30662575     NM_139320      CHRFAM7A
6   chr15   30249459       30662575     NR_026771  DKFZP434L187
7   chr15   30249459       30662575     NR_026859        ULK4P3
8   chr15   30249459       30662575     NR_033933       GOLGA8T
9   chr20   14821362       15018897     NM_080676       MACROD2
10  chr20   14821362       15018897     NR_037841   MACROD2-AS1
12   chr3  105564599      105696046  NM_001321786          CBLB
18   chr7   83052178       83152197  NM_001178129        SEMA3E, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83620416       83724488  NM_001142699          DLG2
4   chr14   42091588       42682817  NM_001346175         LRFN5
5    chr4     548419        1029666     NM_000203          IDUA
6    chr4     548419        1029666     NM_000283         PDE6B
7    chr4     548419        1029666  NM_001004356        FGFRL1
10   chr4     548419        1029666  NM_001294341         MFSD7
11   chr4     548419        1029666  NM_001297423       TMEM175
12   chr4     548419        1029666  NM_001317836         PCGF3
13   chr4     548419        1029666  NM_001318134           GAK
14   chr4     548419        1029666     NM_001347          DGKQ
15   chr4     548419        1029666     NM_002477          MYL5
16   chr4     548419        1029666     NM_006651         CPLX1
17   chr4     548419        1029666     NM_007100         ATP5I
19   chr4     548419        1029666     NM_022042       SLC26A1
21   chr4     548419        1029666     NR_036511  LOC100129917
22   chr8   16480065       18037751  NM_001001925         MTUS1
24   chr8   16480065       18037751  NM_001008539        SLC7A2
25   chr8   16480065       18037751  NM_001127505         ASAH1
26   chr8   16480065       18037751  NM_001145152        VPS37A
27   chr8   16480065       18037751  NM_001160179          NAT1
30   chr8   16480065       18037751  NM_001315507          PCM1
31   chr8   16480065       18037751  NM_001322087         CNOT7
36   chr8   16480065       18037751     NM_004686         MTMR7
37   chr8   16480065       18037751     NM_006207        PDGFRL
39   chr8   16480065       18037751     NM_016353        ZDHHC2
40   chr8   16480065       18037751     NM_019851         FGF20
43   chr8   16480065       18037751     NM_181723         MICU3
44   chr8   16480065       18037751     NM_201552          FGL1
46   chr8   16480065       18037751     NR_036103       MIR548V
47   chr8   16480065       18037751     NR_125429  LOC101929066,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr4  169186267      169392587  NM_001012967    DDX60L
2  chr4  169186267      169392587     NM_017631     DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81428919       81854799  NM_001270367       TMEM254
3   chr10   81428919       81854799  NM_001278495        NUTM2B
4   chr10   81428919       81854799     NM_003019         SFTPD
5   chr10   81428919       81854799     NR_002724         MBL1P
6   chr10   81428919       81854799     NR_027431   TMEM254-AS1
7   chr10   81428919       81854799     NR_027512       BEND3P3
8   chr10   81428919       81854799     NR_029407     LOC642361
9   chr10   81428919       81854799     NR_033857       BMS1P21
10  chr10   81428919       81854799     NR_120611    NUTM2B-AS1
13  chr20   14669057       14803542     NM_080676       MACROD2
14   chr4   69319407       70098433     NM_001073       UGT2B11
15   chr4   69319407       70098433     NM_001075       UGT2B10
17   chr4   69319407       70098433     NM_001076       UGT2B15
18   chr4   69319407       70098433     NM_001077       UGT2B17
19   chr4   69319407       70098433  NM_001330719        UGT2B7
20   chr4   69319407       70098433     NM_014058     TMPRSS11E
21   chr4   69319407       70098433     NM_024743        UGT2A3
22   chr4   69319407       70098433     NR_136191  LOC105377267,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67958033       68645146  NM_001127384    CTNNA3
2   chr11   67348396       68656355     NM_000695   ALDH3B2
3   chr11   67348396       68656355     NM_000852     GSTP1
5   chr11   67348396       68656355  NM_001031847     CPT1A
6   chr11   67348396       68656355  NM_001039656    TESMIN
7   chr11   67348396       68656355  NM_001161473   ALDH3B1
8   chr11   67348396       68656355  NM_001164164    PPP6R3
9   chr11   67348396       68656355  NM_001166102    NDUFV1
10  chr11   67348396       68656355  NM_001243750     NUDT8
12  chr11   67348396       68656355  NM_001300907     KMT5B
16  chr11   67348396       68656355     NM_002335      LRP5
17  chr11   67348396       68656355     NM_002496    NDUFS8
19  chr11   67348396       68656355     NM_005995     TBX10
20  chr11   67348396       68656355     NM_006019    TCIRG1
22  chr11   67348396       68656355     NM_015973       GAL
24  chr11   67348396       68656355     NM_022338  C11orf24
25  chr11   67348396       68656355     NM_030930   UNC93B1
26  chr11   67348396       68656355     NM_080658      ACY3
28  chr11   67348396       68656355     NM_212469      CHKA
29  chr11   67348396       68656355     NR_024249  FAM86C2P
30  chr11   67348396       68656355     NR_033791    DOC2GP
31  chr11   67348396       68656355     NR_039840   MIR4691
32  chr11   67348396       68656355     NR_106811   MIR6753
33  chr11   67348396       68656355     NR_106963   MIR7113
34  chr11   67348396       68656355     NR_130935  C11orf72
35  chr17   21856019       22015628     NR_027084  FLJ36000
36   chr4   94198722       94342189     NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr13   25236089       25539774  NM_001184993        RNF17
1   chr13   25236089       25539774  NM_001185085       ATP12A
2   chr13   25236089       25539774     NR_026730      TPTE2P1
3   chr13   25236089       25539774     NR_047594        CENPJ
4    chr2   50839262       50950712  NM_001330082        NRXN1
5    chr2   50839262       50950712     NR_130470      MIR8485
6    chr4   69001046       69322902  NM_001031732       YTHDC1
7    chr4   69001046       69322902     NM_014058    TMPRSS11E
8    chr4   69001046       69322902     NM_182502    TMPRSS11B
9    chr4   69001046       69322902     NR_015446       FTLP10
10   chr4   69001046       69322902     NR_104048  TMPRSS11BNL,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr19    1854543        1966697  NM_001130111       ABHD17A
1   chr19    1854543        1966697     NM_001319       CSNK1G2
2   chr19    1854543        1966697  NM_001329539        SCAMP4
3   chr19    1854543        1966697     NM_031918         KLF16
4   chr19    1854543        1966697     NM_138422         ADAT3
5   chr19    1854543        1966697     NR_033400   CSNK1G2-AS1
6   chr20   14806231       15015155     NM_080676       MACROD2
7   chr20   14806231       15015155     NR_037841   MACROD2-AS1
9   chr22   17189201       17318860     NM_175878          XKR3
10  chr22   17189201       17318860     NR_003607       HSFY1P1
11  chr22   17189201       17318860     NR_134584  LOC101929350
12   chr5   59626240       59738595  NM_001165899         PDE4D
13   chr6  161909944      162127163     NM_013988         PARK2
14   chr7   75882813       76121726  NM_001102594          DTX2
16   chr7   75882813       76121726  NM_001110199         SRRM3
17   chr7   75882813       76121726  NM_001110354           ZP3
18   chr7   75882813       76121726     NM_001540         HSPB1
20   chr7   75882813       76121726     NM_012479         YWHAG
21   chr7   75882813       76121726     NM_080744         SSC4D
22   chr7   75882813       76121726     NR_003262        FDPSP2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   83113311       83385750  NM_001220488         CDH13
2  chr21   23434097       23598146     NR_038400     LINC00308
3  chr21   23434097       23598146     NR_109959  LOC101927843,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr18   63313820       63421235  NM_001317214       CDH7
3   chr20   21988175       22247329     NR_038394  LINC01432
4    chr4    9017068        9581590  NM_001040448    DEFB131
5    chr4    9017068        9581590  NM_001242326   USP17L25
13   chr4    9017068        9581590  NM_001256852   USP17L10
14   chr4    9017068        9581590  NM_001256853   USP17L12
16   chr4    9017068        9581590  NM_001256854   USP17L11
19   chr4    9017068        9581590  NM_001256855   USP17L13
20   chr4    9017068        9581590  NM_001256857   USP17L17
21   chr4    9017068        9581590  NM_001256860   USP17L19
22   chr4    9017068        9581590  NM_001256861   USP17L20
23   chr4    9017068        9581590  NM_001256894   USP17L15
24   chr4    9017068        9581590     NR_027279   USP17L6P
25   chr4    9017068        9581590     NR_031688   MIR548I2
26   chr4    9017068        9581590     NR_046416   USP17L9P
27   chr6  162505090      162605207     NM_013988      PARK2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16    8591161        8909426     NM_000303      PMM2
1  chr16    8591161        8909426     NM_000663      ABAT
3  chr16    8591161        8909426  NM_001146336   TMEM114
5  chr16    8591161        8909426     NM_015421   TMEM186
7  chr16    8591161        8909426     NM_024109   METTL22
9   chr8   15291281       15669136     NM_006765     TUSC3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr13   54704335       54837175     NR_108062     LINC00458
2   chr2   52005396       52188907     NR_135237     LOC730100
3   chr7   68653079       69416669  NM_001127231         AUTS2
5   chr7   68653079       69416669     NR_108105  LOC100507468,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr22   20115608       20244686  NM_001243537    CCDC188
1   chr22   20115608       20244686     NM_013373     ZDHHC8
2   chr22   20115608       20244686     NM_023004      RTN4R
3   chr22   20115608       20244686     NR_026919  LINC00896
4   chr22   20115608       20244686     NR_031618    MIR1286
5   chr22   20115608       20244686     NR_038460  LOC284865
6    chr5  109787375      110135238  NM_001039763    TMEM232
7    chr5  109787375      110135238  NM_001303250   SLC25A46
9    chr5  109787375      110135238     NR_031644   MIR548F3
10   chr7   64109289       64405794  NM_001160183     ZNF138
11   chr7   64109289       64405794  NM_001282360     ZNF107
12   chr7   64109289       64405794     NM_021148     ZNF273
15   chr7   64109289       64405794     NR_106898    MIR6839,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr12    9375321        9481611  NR_024374  LOC642846
1  chr12    9375321        9481611  NR_036466  LINC00987
2  chr12    9375321        9481611  NR_040112      A2MP1
3  chr12    9375321        9481611  NR_128710  MIR1244-4
5  chr12   72667502       72783597  NM_013381      TRHDE
6   chr9    2462818        2705846  NM_003383      VLDLR
7   chr9    2462818        2705846  NR_015375  VLDLR-AS1
8   chr9   38989390       39149760  NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   12852969       13009563  NM_001009611   PRAMEF4
1    chr1   12852969       13009563  NM_001010889   PRAMEF6
2    chr1   12852969       13009563  NM_001010890   PRAMEF9
3    chr1   12852969       13009563  NM_001012276   PRAMEF8
4    chr1   12852969       13009563  NM_001013631  HNRNPCL1
5    chr1   12852969       13009563  NM_001146181  HNRNPCL3
6    chr1   12852969       13009563  NM_001146344  PRAMEF11
7    chr1   12852969       13009563  NM_001294139   PRAMEF1
8    chr1   12852969       13009563  NM_001302551  HNRNPCL4
10   chr1   12852969       13009563     NM_023014   PRAMEF2
11   chr1  215763068      216045471  NM_001319294     KCTD3
12   chr1  215763068      216045471     NM_206933     USH2A
13  chr12   80986927       81099810  NM_001145026     PTPRQ
14   chr8    3649264        3751507     NM_033225     CSMD1
15   chr9  119704568      119876087     NM_014010     ASTN2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   27564889       27722843  NM_001034842    PTCHD3
1  chr10   27564889       27722843     NR_138082   ARMC4P1
2  chr22   17232588       17557124  NM_001037814      GAB4
3  chr22   17232588       17557124     NM_175878      XKR3
4  chr22   17232588       17557124     NR_003607   HSFY1P1
5  chr22   17232588       17557124     NR_015352     CECR7
6   chr9   38963774       39076388     NM_033655   CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr4   73006879       74324678     NM_000477        ALB
1   chr4   73006879       74324678     NM_001134        AFP
2   chr4   73006879       74324678  NM_001286771    ANKRD17
3   chr4   73006879       74324678     NM_004885     NPFFR2
4   chr4   73006879       74324678     NM_014243    ADAMTS3
7   chr4   73006879       74324678     NM_173827      COX18
8   chr7  110776292      110896686  NM_001244606     IMMP2L
10  chr9   88410551       88535647     NR_029410  LOC389765,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   76288489       76806899  NM_001322181       CNTNAP4
2   chr16   76288489       76806899     NR_110934  LOC101928203
3    chr2   97207781       97381359  NM_001115016        KANSL3
4    chr2   97207781       97381359  NM_001293083        FER1L5
5    chr2   97207781       97381359  NM_001319085        ARID5A
7    chr2   97207781       97381359  NM_001322354        LMAN2L
10   chr2  110166463      110476311  NM_001099289        SH3RF3
11   chr2  110166463      110476311  NM_001321504        SEPT10
13   chr2  110166463      110476311     NM_023016        SOWAHC
14   chr4    8554923        8658995  NM_001014447           CPZ
15   chr4    8554923        8658995     NM_080819         GPR78
17   chr9     318597        1337478  NM_001130865         DMRT2
18   chr9     318597        1337478  NM_001190458         DOCK8
19   chr9     318597        1337478  NM_001256876         KANK1
22   chr9     318597        1337478     NM_021240         DMRT3
23   chr9     318597        1337478     NM_021951         DMRT1
27   chr9     318597        1337478     NR_110643     LINC01230,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr21   30153986       30651023  NM_001286619     MAP3K7CL
4   chr21   30153986       30651023  NM_001320724       RWDD2B
5   chr21   30153986       30651023  NM_001320766         LTN1
6   chr21   30153986       30651023     NM_006447        USP16
7   chr21   30153986       30651023     NM_006585         CCT8
8   chr21   30153986       30651023     NM_013240       N6AMT1
12  chr21   30153986       30651023     NR_027072    LINC00189
14   chr4   68929054       69482950  NM_001031732       YTHDC1
15   chr4   68929054       69482950     NM_001077      UGT2B17
16   chr4   68929054       69482950     NM_014058    TMPRSS11E
17   chr4   68929054       69482950     NM_182502    TMPRSS11B
18   chr4   68929054       69482950     NM_207407    TMPRSS11F
19   chr4   68929054       69482950     NR_015446       FTLP10
20   chr4   68929054       69482950     NR_046116    LOC550113
21   chr4   68929054       69482950     NR_104048  TMPRSS11BNL
22   chr9   28226175       29711360  NM_001258282       LINGO2
24   chr9   28226175       29711360     NR_030597       MIR876
25   chr9   28226175       29711360     NR_030618       MIR873
26   chr9   28713124       28855848  NM_001258282       LINGO2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  185918446      186223530     NM_031935     HMCN1
1   chr3  189612163      189779669  NM_001134418      P3H2
2   chr3  189612163      189779669  NM_001329148      TP63
6   chr7   29479317       29660758  NM_001293069      CHN2
10  chr7   29479317       29660758  NM_001329997     PRR15
13  chr7   82841858       83010956  NM_001178129    SEMA3E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68084730       69673335  NM_001127384        CTNNA3
1   chr10   68084730       69673335  NM_001142498         SIRT1
6   chr10   68084730       69673335     NM_021800       DNAJC12
7   chr10   68084730       69673335     NM_178011        LRRTM3
9   chr10   68084730       69673335     NR_106973       MIR7151
11  chr10   68084730       69673335     NR_111911  LOC101928961
12  chr19   21871709       21987288     NM_173531        ZNF100
13  chr19   21871709       21987288     NR_024523     LOC641367
14   chr7   64103176       64318298  NM_001160183        ZNF138
15   chr7   64103176       64318298  NM_001282360        ZNF107
18   chr7   64103176       64318298     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr17   14019000       14169355  NM_001007530     CDRT15
1  chr17   14019000       14169355     NM_001303      COX10
2   chr9   80116191       80383132     NM_002072       GNAQ
3   chr9   80116191       80383132     NM_004297      GNA14
4   chr9   80116191       80383132     NR_121184  GNA14-AS1,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   71760236       72078115  NM_080759      DACH1
1   chr4   98386491       98535218  NM_174952      STPG2
2   chr4   98386491       98535218  NR_102713  STPG2-AS1
3   chr9    9528857        9629901  NM_002839      PTPRD
4   chr9    9479559        9628754  NM_002839      PTPRD,    chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr5   13210998       15689134  NM_001278317          FBXL7
1   chr5   13210998       15689134     NM_001369          DNAH5
3   chr5   13210998       15689134     NM_019018        FAM105A
4   chr5   13210998       15689134     NM_054027           ANKH
5   chr5   13210998       15689134     NM_138348         OTULIN
6   chr5   13210998       15689134     NR_039780        MIR4637
7   chr5   13210998       15689134     NR_046285   LOC100130744
8   chr5   13210998       15689134     NR_109944   LOC101929454
9   chr5   13210998       15689134     NR_109945  CTD-2350J17.1
10  chr5   13210998       15689134     NR_132980      SNORD141A
11  chr5   13210998       15689134     NR_134469           TRIO,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37386045       37542534     NM_052997      ANKRD30A
1   chr13  113083257      113192565  NM_001286278       TUBGCP3
3   chr13  113083257      113192565     NM_145248        SPACA7
4   chr14   42172806       42309439  NM_001346175         LRFN5
5   chr21   13581401       15429291     NM_174981         POTED
6   chr21   13581401       15429291     NR_026755      CYP4F29P
7   chr21   13581401       15429291     NR_026916    ANKRD30BP2
8   chr21   13581401       15429291     NR_027270   ANKRD20A11P
9   chr21   13581401       15429291     NR_036061     MIR3118-1
10  chr21   13581401       15429291     NR_036164     MIR3156-3
11  chr21   13581401       15429291     NR_110544  LOC102724188
12  chr21   13581401       15429291     NR_128718     MIR8069-2
13   chr4   93959084       94206572     NM_001510         GRID2
14   chr7    8582666        8940420     NM_152745         NXPH1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   79049070       79217359     NM_006417     IFI44
1   chr1   79049070       79217359     NM_006820    IFI44L
3  chr10   67712561       67856080  NM_001127384    CTNNA3
5  chr11   31183363       31301403     NM_181807     DCDC1
6  chr12   71431545       71673945     NM_004616    TSPAN8,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   57646541       57777857  NM_001330122     R3HDM2
2   chr16   15396606       16064581  NM_001040113      MYH11
3   chr16   15396606       16064581  NM_001128423     MPV17L
4   chr16   15396606       16064581  NM_001142469   C16orf45
5   chr16   15396606       16064581  NM_001143979       NDE1
6   chr16   15396606       16064581  NM_001184998   KIAA0430
7   chr16   15396606       16064581  NM_001277325     NPIPA5
8   chr16   15396606       16064581     NM_004996      ABCC1
11  chr16   15396606       16064581     NR_030159     MIR484
12  chr16   15396606       16064581     NR_106761    MIR6506
13  chr16   15396606       16064581     NR_130755      FOPNL
14   chr2  110153293      110334548  NM_001099289     SH3RF3
15   chr2  110153293      110334548  NM_001321504     SEPT10
17   chr5     119662         229474  NM_001080478    LRRC14B
18   chr5     119662         229474     NM_004168       SDHA
19   chr5     119662         229474     NM_052909   PLEKHG4B
20   chr5     119662         229474     NM_145265    CCDC127
21   chr9   17230382       17386976  NM_001114395      CNTLN
23   chr9   80095808       80258125     NM_004297      GNA14
24   chr9   80095808       80258125     NR_121184  GNA14-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   20651378       20780470  NM_001145004  GOLGA6L6
1   chr15   20651378       20780470     NR_027411  GOLGA8CP
2   chr15   20651378       20780470     NR_036432   HERC2P3
3    chr4  129639410      129967041  NM_001287437     JADE1
8    chr4  129639410      129967041  NM_001300897     SCLT1
12   chr5   13381331       13899623     NM_001369     DNAH5,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21931451       22442001  NM_001001912      OR4E2
1   chr14   21931451       22442001  NM_001005465     OR10G3
2   chr14   21931451       22442001  NM_001005466     OR10G2
3   chr14   21931451       22442001  NM_001163380      RAB2B
4   chr14   21931451       22442001  NM_001303523       TOX4
5   chr14   21931451       22442001  NM_001317107      OR4E1
6   chr14   21931451       22442001     NM_019852     METTL3
8   chr14   21931451       22442001     NR_111966      SALL2
10   chr4   69178522       69321904  NM_001031732     YTHDC1
11   chr4   69178522       69321904     NM_014058  TMPRSS11E
12   chr5   12414367       12605646     NR_033383  LINC01194,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  187188227      187327183     NR_126347     LINC01036
1  chr17   78183984       78469557     NM_000199          SGSH
2  chr17   78183984       78469557  NM_001164637         ENDOV
4  chr17   78183984       78469557  NM_001166349      SLC26A11
5  chr17   78183984       78469557  NM_001256071        RNF213
6  chr17   78183984       78469557     NM_002522         NPTX1
8  chr17   78183984       78469557     NR_029376  LOC100294362
9  chr17   78183984       78469557     NR_039883       MIR4730,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr5  127802637      127982779  NM_001999      FBN2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr17   14051367       14483598  NM_001007530       CDRT15
1   chr17   14051367       14483598     NM_001303        COX10
2   chr17   14051367       14483598     NM_006041     HS3ST3B1
3   chr17   14051367       14483598     NR_026880     MGC12916
4   chr20   14804111       14972400     NM_080676      MACROD2
5   chr20   14804111       14972400     NR_037841  MACROD2-AS1
7    chr5   59571677       59718612  NM_001165899        PDE4D
8    chr7   75717224       76080550  NM_001110199        SRRM3
9    chr7   75717224       76080550  NM_001110354          ZP3
10   chr7   75717224       76080550     NM_001540        HSPB1
12   chr7   75717224       76080550     NM_012479        YWHAG
13   chr7   75717224       76080550     NM_080744        SSC4D
14   chr7   75717224       76080550     NR_135079      GTF2IP7,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   85684445       86553302  NM_001270546        AKAP13
1  chr15   85684445       86553302  NM_001310153      GOLGA6L3
3  chr15   85684445       86553302     NM_022480        KLHL25
4  chr15   85684445       86553302     NR_031682       MIR1276
5  chr15   85684445       86553302     NR_049748     LOC642423
6  chr15   85684445       86553302     NR_049805      MIR548AP
7  chr15   85684445       86553302     NR_106993       MIR7706
8  chr15   85684445       86553302     NR_120366  LOC101929679,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   12822170       12947783  NM_001009611   PRAMEF4
1    chr1   12822170       12947783  NM_001013631  HNRNPCL1
2    chr1   12822170       12947783  NM_001080830  PRAMEF12
3    chr1   12822170       12947783  NM_001146181  HNRNPCL3
4    chr1   12822170       12947783  NM_001146344  PRAMEF11
5    chr1   12822170       12947783  NM_001294139   PRAMEF1
6    chr1   12822170       12947783  NM_001302551  HNRNPCL4
8    chr1   12822170       12947783     NM_023014   PRAMEF2
9   chr14   47879453       48003400  NM_001113498     MDGA2
10  chr18   24655164       24806547  NM_001256316     CHST9
11  chr20   40556618       40867931     NM_133170     PTPRT,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   12805586       13017423  NM_001009611    PRAMEF4
1   chr1   12805586       13017423  NM_001010889    PRAMEF6
2   chr1   12805586       13017423  NM_001010890    PRAMEF9
3   chr1   12805586       13017423  NM_001012276    PRAMEF8
4   chr1   12805586       13017423  NM_001013631   HNRNPCL1
5   chr1   12805586       13017423  NM_001080830   PRAMEF12
6   chr1   12805586       13017423  NM_001146181   HNRNPCL3
7   chr1   12805586       13017423  NM_001146344   PRAMEF11
8   chr1   12805586       13017423  NM_001294139    PRAMEF1
9   chr1   12805586       13017423  NM_001302551   HNRNPCL4
11  chr1   12805586       13017423     NM_023014    PRAMEF2
12  chr1   12805586       13017423     NM_152290   C1orf158
13  chr2   50761102       50891861  NM_001330082      NRXN1
14  chr4   66436211       67155368  NM_001281766      EPHA5
17  chr4   66436211       67155368     NR_031673   MIR1269A
18  chr4   66436211       67155368     NR_034138  EPHA5-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  162801352      163153133  NM_001102445          RGS4
3    chr1  162801352      163153133  NM_001254748          RGS5
6    chr1  162801352      163153133     NM_178550       CCDC190
7    chr1  162801352      163153133     NR_110699  LOC101928404
8   chr11   89099779       89321403  NM_001143837          NOX4
14  chr15   30305677       30443398  NM_001282472       GOLGA8J
15  chr15   30305677       30443398     NR_026859        ULK4P3
16  chr15   30305677       30443398     NR_033933       GOLGA8T
17   chr2  112389948      113044551  NM_001128165         FBLN7
18   chr2  112389948      113044551     NM_006343         MERTK
19   chr2  112389948      113044551     NM_022662        ANAPC1
20   chr2  112389948      113044551     NM_032494         ZC3H8
21   chr2  112389948      113044551     NM_032824       TMEM87B
22   chr2  112389948      113044551     NM_198581         ZC3H6
23   chr2  112389948      113044551     NR_039929     MIR4771-2
24   chr3   36099759       36482427     NM_003149          STAC
25   chr4    9018343        9215001  NM_001256852      USP17L10,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   20069432       20227386  NM_001190326         DGCR8
1   chr22   20069432       20227386  NM_001243537       CCDC188
2   chr22   20069432       20227386  NM_001278639        RANBP1
5   chr22   20069432       20227386     NM_013373        ZDHHC8
6   chr22   20069432       20227386     NM_022727        TRMT2A
7   chr22   20069432       20227386     NR_026919     LINC00896
8   chr22   20069432       20227386     NR_031706       MIR1306
9   chr22   20069432       20227386     NR_037412       MIR3618
10  chr22   20069432       20227386     NR_038460     LOC284865
11  chr22   20069432       20227386     NR_106874       MIR6816
12   chr5  154213829      154483823  NM_001014990        MRPL22
13   chr5  154213829      154483823  NM_001099293         KIF4B
14   chr5  154213829      154483823  NM_001301074         CNOT8
17   chr5  154213829      154483823     NM_015465        GEMIN5
18   chr5  154213829      154483823     NM_032385        FAXDC2
19   chr9   41924412       42232283     NR_003670        FGF7P3
20   chr9   41924412       42232283     NR_015363         GLIDR
23   chr9   41924412       42232283     NR_126048  LOC102724238
24   chr9   41924412       42232283     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4177023        4932098  NM_001004137        OR52M1
1   chr11    4177023        4932098  NM_001004749        OR51A7
2   chr11    4177023        4932098  NM_001004751        OR51D1
3   chr11    4177023        4932098  NM_001004752        OR51F1
4   chr11    4177023        4932098  NM_001004753        OR51F2
5   chr11    4177023        4932098  NM_001004758        OR51S1
6   chr11    4177023        4932098  NM_001004759        OR51T1
7   chr11    4177023        4932098  NM_001005161        OR52B4
8   chr11    4177023        4932098  NM_001005169        OR52I1
9   chr11    4177023        4932098  NM_001005170        OR52I2
10  chr11    4177023        4932098  NM_001005171        OR52K1
11  chr11    4177023        4932098  NM_001005172        OR52K2
12  chr11    4177023        4932098  NM_001005177        OR52R1
13  chr11    4177023        4932098     NM_003141        TRIM21
14  chr11    4177023        4932098     NM_018073        TRIM68
15  chr11    4177023        4932098     NM_030774        OR51E2
16  chr11    4177023        4932098     NM_144663      C11orf40
17  chr11    4177023        4932098     NM_152430        OR51E1
18  chr11    4177023        4932098     NR_047550  LOC100506082
19   chr3   60152275       60525978  NM_001320899          FHIT
20   chr7   57252898       57425559     NR_136269  LOC105375297,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10  135279543      136835784     NM_000773       CYP2E1
1   chr10  135279543      136835784  NM_001080998        FRG2B
2   chr10  135279543      136835784  NM_001143763        SYCE1
5   chr10  135279543      136835784     NR_002934       SCART1
6   chr10  135279543      136835784     NR_033789       SPRNP1
7   chr19   57887258       58476336  NM_001023561       ZNF749
8   chr19   57887258       58476336  NM_001077426       ZNF586
9   chr19   57887258       58476336  NM_001098491       ZNF419
10  chr19   57887258       58476336  NM_001144068       ZNF772
11  chr19   57887258       58476336  NM_001144989       ZNF814
12  chr19   57887258       58476336  NM_001172773       ZNF548
13  chr19   57887258       58476336  NM_001199295       ZNF549
14  chr19   57887258       58476336  NM_001204817       ZNF587
15  chr19   57887258       58476336  NM_001204818      ZNF587B
16  chr19   57887258       58476336  NM_001270938       ZNF551
17  chr19   57887258       58476336  NM_001277090       ZNF550
18  chr19   57887258       58476336  NM_001297734       ZNF417
19  chr19   57887258       58476336  NM_001304334       ZNF773
21  chr19   57887258       58476336  NM_001317029       ZNF418
22  chr19   57887258       58476336  NM_001321145         ZIK1
23  chr19   57887258       58476336  NM_001321375       ZNF671
24  chr19   57887258       58476336  NM_001321981       ZNF530
25  chr19   57887258       58476336  NM_001322306       ZNF211
26  chr19   57887258       58476336  NM_001330617        ZNF17
27  chr19   57887258       58476336     NM_003435       ZNF134
28  chr19   57887258       58476336     NM_005773       ZNF256
30  chr19   57887258       58476336     NM_017879       ZNF416
31  chr19   57887258       58476336     NM_020633        VN1R1
32  chr19   57887258       58476336     NM_024762       ZNF552
34  chr19   57887258       58476336     NM_152474     C19orf18
36  chr19   57887258       58476336     NM_152677       ZSCAN4
37  chr19   57887258       58476336     NM_173631       ZNF547
38  chr19   57887258       58476336     NM_173632       ZNF776
39  chr19   57887258       58476336     NR_024162     FKBP1AP1
40  chr19   57887258       58476336     NR_110975       ZNF154
43  chr20   14528639       14872139     NM_080676      MACROD2
44  chr20   14528639       14872139     NR_037841  MACROD2-AS1
45  chr20   14528639       14872139     NR_104193  MACROD2-IT1
46   chr9   28226382       28958039  NM_001258282       LINGO2
48   chr9   28226382       28958039     NR_030597       MIR876
49   chr9   28226382       28958039     NR_030618       MIR873
50   chr9   38955131       39418300  NM_001085452    SPATA31A1
51   chr9   38955131       39418300     NM_033655      CNTNAP3
52   chr9   38955131       39418300     NR_026803      FAM74A1,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   28154583       28349493  NM_000275      OCA2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   67725627       67958826  NM_001127384     CTNNA3
2  chr14   21637513       21842251     NM_007192    SUPT16H
3  chr14   21637513       21842251     NM_020366    RPGRIP1
4  chr14   21637513       21842251     NM_031314     HNRNPC
5  chr14   21637513       21842251     NR_038970  LINC00641
7  chr18   40185719       40336355     NM_002930       RIT2
8  chr18   40185719       40336355     NR_046174  LINC00907
9   chr8   15266902       15832775     NM_006765      TUSC3,     chrom  cnv_start  cnv_terminate       tx_name         gene_name
0   chr20   25321796       26499217  NM_001042472            ABHD12
1   chr20   25321796       26499217  NM_001290261            ZNF337
2   chr20   25321796       26499217  NM_001318226              NINL
5   chr20   25321796       26499217     NM_021067             GINS1
6   chr20   25321796       26499217     NM_152667              NANP
7   chr20   25321796       26499217     NR_003678           NCOR1P1
8   chr20   25321796       26499217     NR_004846      LOC100134868
9   chr20   25321796       26499217     NR_026713           FAM182A
10  chr20   25321796       26499217     NR_026714           FAM182B
12  chr20   25321796       26499217     NR_030386           MIR663A
13  chr20   25321796       26499217     NR_040095         MIR663AHG
14  chr20   25321796       26499217     NR_110001      LOC101926935
15  chr20   25321796       26499217     NR_110003      LOC101926955
16  chr20   25321796       26499217     NR_126465        ZNF337-AS1
19  chr20   25321796       26499217     NR_135006      LOC105372582
20  chr20   25321796       26499217     NR_135512      LOC105379511
21   chr6   57662812       58282076     NR_125727         LINC00680
22   chr6   57662812       58282076     NR_132997  LINC00680-GUSBP4
23   chr6   57662812       58282076     NR_132999            GUSBP4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89686094       89875979  NM_001136486        TRIM64
1   chr11   89686094       89875979  NM_001143975        UBTFL1
2   chr11   89686094       89875979  NM_001195234       TRIM49C
3   chr11   89686094       89875979     NM_005467       NAALAD2
4   chr11   89686094       89875979     NR_028346      TRIM53AP
5    chr5  120559396      120752368     NR_104999  LOC102467226
6    chr7  110659408      110858882  NM_001099658         LRRN3
7    chr7  110659408      110858882  NM_001244606        IMMP2L
9    chr8   58052683       58173984     NR_038235     LINC01606
10   chr8   58052683       58173984     NR_038874     LOC286177,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   27200506       27326472  NM_001080406  C12orf71
1  chr22   17242926       17420916     NM_175878      XKR3
2  chr22   17242926       17420916     NR_003607   HSFY1P1
3   chr7    3838892        3939673     NM_152744      SDK1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   12814724       12951324  NM_001009611       PRAMEF4
1   chr1   12814724       12951324  NM_001013631      HNRNPCL1
2   chr1   12814724       12951324  NM_001080830      PRAMEF12
3   chr1   12814724       12951324  NM_001146181      HNRNPCL3
4   chr1   12814724       12951324  NM_001146344      PRAMEF11
5   chr1   12814724       12951324  NM_001294139       PRAMEF1
6   chr1   12814724       12951324  NM_001302551      HNRNPCL4
8   chr1   12814724       12951324     NM_023014       PRAMEF2
9   chr1   12814724       12951324     NM_152290      C1orf158
10  chr1  144799531      146340322  NM_001002810       PDE4DIP
13  chr1  144799531      146340322  NM_001012758        NUDT17
14  chr1  144799531      146340322  NM_001039888      ANKRD34A
15  chr1  144799531      146340322  NM_001097612        GPR89A
16  chr1  144799531      146340322  NM_001101663        NBPF11
17  chr1  144799531      146340322  NM_001184795        PEX11B
22  chr1  144799531      146340322  NM_001201325         PDZK1
23  chr1  144799531      146340322  NM_001277444         NBPF9
24  chr1  144799531      146340322  NM_001278267        NBPF20
25  chr1  144799531      146340322  NM_001280799       ANKRD35
26  chr1  144799531      146340322  NM_001302371        NBPF10
27  chr1  144799531      146340322  NM_001303040        ITGA10
28  chr1  144799531      146340322  NM_001303456        POLR3C
29  chr1  144799531      146340322  NM_001313972         TXNIP
31  chr1  144799531      146340322     NM_004892        SEC22B
32  chr1  144799531      146340322     NM_005105         RBM8A
33  chr1  144799531      146340322     NM_006099         PIAS3
36  chr1  144799531      146340322     NM_007053         CD160
37  chr1  144799531      146340322     NM_014455        RNF115
39  chr1  144799531      146340322     NM_032305       POLR3GL
40  chr1  144799531      146340322     NM_145277          HFE2
41  chr1  144799531      146340322     NM_153713         LIX1L
42  chr1  144799531      146340322     NM_203458      NOTCH2NL
43  chr1  144799531      146340322     NR_002328        GNRHR2
45  chr1  144799531      146340322     NR_102405         NBPF8
48  chr1  144799531      146340322     NR_104217       NBPF25P
50  chr1  144799531      146340322     NR_106794       MIR6736
52  chr1  144799531      146340322     NR_111936       PDZK1P1
53  chr1  144799531      146340322     NR_125967  LOC101928979
54  chr1  144799531      146340322     NR_135559  LOC100505824,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143069529      143493448     NR_110761  LOC102723769
1   chr4     153193         311671  NM_001039127        ZNF718
2   chr4     153193         311671  NM_001137608        ZNF732
5   chr4     153193         311671     NR_027481       ZNF876P
8   chr6  162786834      162907214     NM_013988         PARK2
9   chr7   64068719       64250128  NM_001282360        ZNF107
10  chr7   64068719       64250128     NR_077227  LOC100128885
12  chr7   64068719       64250128     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   81616248       82054306  NM_001244984         SEL1L
1   chr14   81616248       82054306  NM_001256430         STON2
2   chr14   81616248       82054306  NM_001278940        GTF2A1
6   chr14   81616248       82054306     NR_003021       SNORA79
7   chr14   81616248       82054306     NR_109999  LOC100506700
8   chr14   81616248       82054306     NR_135252  LOC101928504
9    chr4     106712         331630  NM_001039127        ZNF718
10   chr4     106712         331630  NM_001137608        ZNF732
13   chr4     106712         331630     NM_003441        ZNF141
14   chr4     106712         331630     NR_027481       ZNF876P
17   chr5  121006484      123125613     NM_000943          PPIC
18   chr5  121006484      123125613  NM_001136239         PRDM6
19   chr5  121006484      123125613  NM_001166226        CEP120
20   chr5  121006484      123125613  NM_001178102           LOX
21   chr5  121006484      123125613  NM_001195535  LOC100505841
22   chr5  121006484      123125613  NM_001270572       CSNK1G3
26   chr5  121006484      123125613     NM_003100          SNX2
27   chr5  121006484      123125613     NM_005460        SNCAIP
28   chr5  121006484      123125613     NM_014035         SNX24
29   chr5  121006484      123125613     NM_152546        SRFBP1
30   chr5  121006484      123125613     NM_177478          FTMT
31   chr5  121006484      123125613     NM_207317        ZNF474
32   chr5  121006484      123125613     NR_051996      MGC32805
33   chr5  121006484      123125613     NR_109881  LOC101927379
36   chr5  121006484      123125613     NR_134281  LOC101927357,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr9    4515180        4623836  NM_001039395   SPATA6L
1  chr9    4515180        4623836     NM_004170    SLC1A1,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr4   16175699       16285327     NM_153365      TAPT1
1  chr4   16175699       16285327     NR_027696  TAPT1-AS1
2  chr9   28234232       28573878  NM_001258282     LINGO2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr17   63486353       63663934  NM_001037325    CEP112
3  chr17   63486353       63663934     NM_004655     AXIN2
4   chr3  105555465      105819938  NM_001321786      CBLB,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr21   22556056       22803806  NM_004540     NCAM2,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  215769057      215883295  NM_001319294          KCTD3
1    chr1  215769057      215883295     NM_206933          USH2A
2   chr11    7635832        7949459  NM_001004461         OR10A6
3   chr11    7635832        7949459  NM_001256568        PPFIBP2
5   chr11    7635832        7949459  NM_001302826         CYB5R2
9   chr11    7635832        7949459     NM_153444          OR5P2
10  chr11    7635832        7949459     NM_153445          OR5P3
11  chr11    7635832        7949459     NM_198185          OVCH2
12  chr11    7635832        7949459     NR_027711         OR5E1P
13  chr11    7635832        7949459     NR_036678      LOC283299
14  chr16   14971130       15302976  NM_001270767          NTAN1
15  chr16   14971130       15302976  NM_001285445         PDXDC1
20  chr16   14971130       15302976  NM_001301064           RRN3
22  chr16   14971130       15302976     NM_006985         NPIPA1
23  chr16   14971130       15302976     NM_014287          NOMO1
24  chr16   14971130       15302976     NR_036140      MIR3179-1
25  chr16   14971130       15302976     NR_036141      MIR3180-1
26  chr16   14971130       15302976     NR_036142      MIR3180-2
27  chr16   14971130       15302976     NR_037466      MIR3180-4
28  chr16   14971130       15302976     NR_103772   LOC100288162
29  chr16   14971130       15302976     NR_106775      MIR6511B1
30  chr16   14971130       15302976     NR_106965      MIR6511B2
31  chr16   14971130       15302976     NR_106970      MIR6511A3
32  chr16   14971130       15302976     NR_107060      MIR6770-2
33  chr16   14971130       15302976     NR_123721  PKD1P6-NPIPP1
35  chr16   14971130       15302976     NR_125434   LOC100505915
36  chr16   14971130       15302976     NR_128713      MIR3670-4
37   chr2   39730052       39954151  NM_001167959       TMEM178A
39   chr2   39730052       39954151     NR_037875      LOC728730,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21485129       21759106  NM_001077180        METTL9
1   chr16   21485129       21759106  NM_001161683          OTOA
3   chr16   21485129       21759106     NM_005849         IGSF6
6   chr16   21485129       21759106     NR_002594      SLC7A5P2
7   chr16   21485129       21759106     NR_027155        SMG1P3
8   chr16   21485129       21759106     NR_049833     MIR3680-2
9   chr16   21485129       21759106     NR_110930  LOC101927814
10   chr2   84685587       84806399     NM_001370         DNAH6
11   chr2   84685587       84806399     NM_003849        SUCLG1
12   chr7   29494210       29818746  NM_001293069          CHN2
16   chr7   29494210       29818746  NM_001329997         PRR15
19   chr7   29494210       29818746     NR_024278     LOC646762
20   chr7   29494210       29818746     NR_027347       ZNRF2P2
21   chr7   29494210       29818746     NR_036482     DPY19L2P3
22   chr7   29494210       29818746     NR_039600      MIR550A3
23   chr9   30337330       30760172     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88936395       89189644  NM_001099338      NUTM2A
1   chr10   88936395       89189644  NM_001330112      FAM35A
3   chr10   88936395       89189644     NR_024397  NUTM2A-AS1
4   chr10   88936395       89189644     NR_029408   LINC00863
5   chr10   88936395       89189644     NR_046091   LINC00864
6   chr10   88936395       89189644     NR_075100      NUTM2D
8    chr5     139412         251948  NM_001080478     LRRC14B
9    chr5     139412         251948     NM_004168        SDHA
10   chr5     139412         251948     NM_052909    PLEKHG4B
11   chr5     139412         251948     NM_145265     CCDC127
12   chr7   53310952       53957862     NR_038371   LINC01446
13   chr9   28437453       28568644  NM_001258282      LINGO2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   97433624       97585475     NM_000110         DPYD
1    chr1   97433624       97585475     NR_046590     DPYD-AS1
2   chr16   21741226       22053913  NM_001161683         OTOA
3   chr16   21741226       22053913  NM_001164579     C16orf52
4   chr16   21741226       22053913  NM_001310148       NPIPB4
5   chr16   21741226       22053913     NM_003366       UQCRC2
8   chr16   21741226       22053913     NM_173806        PDZD9
9   chr16   21741226       22053913     NR_003370       RRN3P1
10  chr20   14746271       17020411  NM_001033087      MACROD2
11  chr20   14746271       17020411  NM_001199866       KIF16B
12  chr20   14746271       17020411     NM_003092       SNRPB2
13  chr20   14746271       17020411     NM_020157         OTOR
16  chr20   14746271       17020411     NR_037841  MACROD2-AS1
18  chr20   14746271       17020411     NR_130924    LOC613266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11     721143         822809     NM_001004         RPLP2
1   chr11     721143         822809  NM_001191060      SLC25A22
3   chr11     721143         822809  NM_001293167         PANO1
4   chr11     721143         822809  NM_001318824         PDDC1
5   chr11     721143         822809     NM_006755        TALDO1
6   chr11     721143         822809     NM_016564         CEND1
7   chr11     721143         822809     NM_020376        PNPLA2
8   chr11     721143         822809     NM_022772        EPS8L2
10  chr11     721143         822809     NM_145886         PIDD1
11  chr11     721143         822809     NR_002585       SNORA52
12  chr11     721143         822809     NR_126342     LOC171391
13  chr15   28490416       28969615  NM_001282468       GOLGA8M
14  chr15   28490416       28969615     NM_004667         HERC2
15  chr15   28490416       28969615     NR_033351       GOLGA8F
17  chr15   28490416       28969615     NR_033353       GOLGA8G
19  chr15   28490416       28969615     NR_036443       HERC2P9
20  chr15   28490416       28969615     NR_039734     MIR4509-3
22  chr16   21464908       21726506  NM_001077180        METTL9
23  chr16   21464908       21726506  NM_001161683          OTOA
25  chr16   21464908       21726506     NM_005849         IGSF6
28  chr16   21464908       21726506     NR_002594      SLC7A5P2
29  chr16   21464908       21726506     NR_027155        SMG1P3
30  chr16   21464908       21726506     NR_049833     MIR3680-2
31  chr16   21464908       21726506     NR_110930  LOC101927814
32   chr3   17292983       17413795  NM_001134381        TBC1D5
34   chr4   87963390       88961764     NM_000297          PKD2
35   chr4   87963390       88961764     NM_000582          SPP1
36   chr4   87963390       88961764  NM_001128310       SPARCL1
37   chr4   87963390       88961764  NM_001166693          AFF1
38   chr4   87963390       88961764  NM_001184694          MEPE
39   chr4   87963390       88961764  NM_001248011         NUDT9
41   chr4   87963390       88961764  NM_001292003         KLHL8
44   chr4   87963390       88961764     NM_004407          DMP1
45   chr4   87963390       88961764     NM_004967          IBSP
47   chr4   87963390       88961764     NM_014208          DSPP
48   chr4   87963390       88961764     NM_016245      HSD17B11
50   chr4   87963390       88961764     NM_178135      HSD17B13
52   chr4   87963390       88961764     NR_049891       MIR5705
53   chr4  135273961      137823881     NR_103762     LINC00613
55   chr5  119948273      120059935  NM_001300783         PRR16,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   72343235       72730922     NM_173808         NEGR1
1    chr1  245041301      245174495  NM_001143943        EFCAB2
4    chr1  245041301      245174495     NR_111907  LOC101928068
5   chr13   85960091       86060110     NR_046989     LINC00351
6   chr14   61750480       61888124     NM_006255         PRKCH
7   chr20   25332587       25448272  NM_001042472        ABHD12
8   chr20   25332587       25448272  NM_001318226          NINL
10  chr20   25332587       25448272     NM_021067         GINS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr5   59764564       59874650  NM_001165899      PDE4D
1   chr5   59764564       59874650     NR_024617      PART1
4   chr7    4116124        4542004  NM_001079653       SDK1
6   chr7   64091722       64319300  NM_001160183     ZNF138
7   chr7   64091722       64319300  NM_001282360     ZNF107
10  chr7   64091722       64319300     NR_106898    MIR6839
11  chr7  110793398      110922490  NM_001244606     IMMP2L
13  chr7  110754775      110860617  NM_001099658      LRRN3
14  chr7  110754775      110860617  NM_001244606     IMMP2L
16  chr8      35550         170870  NM_001005504     OR4F21
17  chr8      35550         170870     NR_003572  RPL23AP53, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   71670631       71853529     NR_047699  LINC00348
1   chr19    1101966        1583213     NM_000156       GAMT
2   chr19    1101966        1583213     NM_000455      STK11
3   chr19    1101966        1583213  NM_001001975      ATP5D
4   chr19    1101966        1583213     NM_001018      RPS15
5   chr19    1101966        1583213  NM_001039848       GPX4
6   chr19    1101966        1583213  NM_001100122      SBNO2
7   chr19    1101966        1583213  NM_001174118      MEX3D
8   chr19    1101966        1583213  NM_001243079       PLK5
9   chr19    1101966        1583213     NM_001280      CIRBP
10  chr19    1101966        1583213  NM_001281454       MBD3
14  chr19    1101966        1583213     NM_001405      EFNA2
16  chr19    1101966        1583213     NM_005883       APC2
18  chr19    1101966        1583213     NM_017573      PCSK4
19  chr19    1101966        1583213     NM_017914   C19orf24
20  chr19    1101966        1583213     NM_024407     NDUFS7
21  chr19    1101966        1583213     NM_032853       MUM1
22  chr19    1101966        1583213     NM_138393      REEP6
24  chr19    1101966        1583213     NM_152482   C19orf25
25  chr19    1101966        1583213     NM_152769      CBARP
26  chr19    1101966        1583213     NM_170711     DAZAP1
27  chr19    1101966        1583213     NM_177401       MIDN
28  chr19    1101966        1583213     NM_213604   ADAMTSL5
31  chr19    1101966        1583213     NR_027271  CIRBP-AS1
32   chr9   41876554       41977461     NR_003670     FGF7P3
33   chr9   41876554       41977461     NR_015363      GLIDR
36   chr9  132339620      132469664  NM_001286796      NTMT1
40   chr9  132339620      132469664     NM_016307      PRRX2
41   chr9  132339620      132469664     NM_177999       ASB6
42   chr9  132339620      132469664     NM_199350    C9orf50,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   98239540       98364555     NR_024172     LINC00923
1    chr6    1837027        1957421  NM_001253846          GMDS
3    chr7   89251087       90042729  NM_001040665        STEAP2
5    chr7   89251087       90042729  NM_001160138        CFAP69
6    chr7   89251087       90042729  NM_001185073        CLDN12
8    chr7   89251087       90042729     NM_012449        STEAP1
9    chr7   89251087       90042729     NM_033107       GTPBP10
10   chr7   89251087       90042729     NR_003551     DPY19L2P4
11   chr7   89251087       90042729     NR_102424  LOC101409256
12   chr7   89251087       90042729     NR_110029    STEAP2-AS1
13   chr7   89251087       90042729     NR_110085  LOC101927446
14   chr7  108443357      108638034  NM_001024607       C7orf66
15   chr7  110579252      110681454  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   37873187       37994867     NR_135110  LOC105376633
1   chr15   52958146       53263230     NM_004498       ONECUT1
2   chr15   52958146       53263230     NM_019600       FAM214A
4   chr16   69998380       70322916     NM_001605          AARS
5   chr16   69998380       70322916     NM_017990          PDPR
6   chr16   69998380       70322916     NM_058219        EXOSC6
7   chr16   69998380       70322916     NM_173619       CLEC18C
8   chr16   69998380       70322916     NR_003610       PDXDC2P
9   chr16   69998380       70322916     NR_033959        SMG1P7
10  chr16   69998380       70322916     NR_036265     MIR1972-2
11  chr16   69998380       70322916     NR_126007     LOC400541
12  chr16   69998380       70322916     NR_135173  LOC105371328
13   chr4   71335690       72634212     NM_000583            GC
14   chr4   71335690       72634212     NM_000788           DCK
15   chr4   71335690       72634212  NM_001037442         RUFY3
16   chr4   71335690       72634212  NM_001098477         GRSF1
17   chr4   71335690       72634212  NM_001098484        SLC4A4
19   chr4   71335690       72634212  NM_001145006          MUC7
23   chr4   71335690       72634212  NM_001244766         MOB1B
25   chr4   71335690       72634212  NM_001286731          AMTN
31   chr4   71335690       72634212     NM_016519          AMBN
32   chr4   71335690       72634212     NM_020368          UTP3
33   chr4   71335690       72634212     NM_031889          ENAM
34   chr4   71335690       72634212     NM_144646        JCHAIN
36   chr5      81410         387165  NM_001080478       LRRC14B
37   chr5      81410         387165  NM_001242412          AHRR
38   chr5      81410         387165     NM_004168          SDHA
39   chr5      81410         387165     NM_013232         PDCD6
40   chr5      81410         387165     NM_052909      PLEKHG4B
41   chr5      81410         387165     NM_145265       CCDC127
43   chr5      81410         387165     NR_104613         HRAT5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68121035       68798776  NM_001127384        CTNNA3
2   chr10   68121035       68798776     NM_178011        LRRTM3
4   chr10   68121035       68798776     NR_111911  LOC101928961
5    chr5   98669592       99017362     NR_110562  CTD-2151A2.1
6    chr7   64057796       64184786  NM_001282360        ZNF107
7    chr7   64057796       64184786     NR_077227  LOC100128885
9    chr7   64057796       64184786     NR_106898       MIR6839
10   chr7  110720004      110860825  NM_001099658         LRRN3
11   chr7  110720004      110860825  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   28497065       28603124     NM_004667         HERC2
1   chr5  142446987      142589711  NM_001135608      ARHGAP26
2   chr5  142446987      142589711     NR_046816  ARHGAP26-IT1
3   chr6  144748527      144947290     NM_007124          UTRN
4   chr9   39061056       39342044     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143476352      143772524  NM_001123068       PPIAL4G
1    chr1  143476352      143772524     NR_104014     LINC01138
2    chr1  143476352      143772524     NR_106967       MIR6077
3    chr1  143476352      143772524     NR_111930  LOC100132057
4   chr15   30281259       30418283  NM_001282472       GOLGA8J
5   chr15   30281259       30418283     NR_026859        ULK4P3
6   chr15   85617551       85766073  NM_001243137         PDE8A
8   chr15   85617551       85766073     NR_049748     LOC642423
9   chr17   63538497       63657307  NM_001037325        CEP112
12  chr17   63538497       63657307     NM_004655         AXIN2
13   chr2   49117782       49715189     NM_181446          FSHR
14   chr2   49117782       49715189     NR_107011      MIR548BA
15   chr5  150059235      150195570  NM_001135643         DCTN4
17   chr5  150059235      150195570     NM_018047         RBM22
18   chr5  150059235      150195570     NM_032947         SMIM3,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81452808       81723804  NM_001278495      NUTM2B
1   chr10   81452808       81723804     NM_003019       SFTPD
2   chr10   81452808       81723804     NR_002724       MBL1P
3   chr10   81452808       81723804     NR_029407   LOC642361
4   chr10   81452808       81723804     NR_033857     BMS1P21
5   chr10   81452808       81723804     NR_120611  NUTM2B-AS1
8   chr15   20657521       20956641  NM_001145004    GOLGA6L6
9   chr15   20657521       20956641     NR_027411    GOLGA8CP
10  chr15   20657521       20956641     NR_027992      NBEAP1
11  chr15   20657521       20956641     NR_036432     HERC2P3
12   chr3   60316879       60559429  NM_001320899        FHIT,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr7   75779296       76048599  NM_001110199         SRRM3
1  chr7   75779296       76048599     NM_001540         HSPB1
2  chr7   75779296       76048599     NM_007155           ZP3
3  chr7   75779296       76048599     NM_012479         YWHAG
4  chr7   75779296       76048599     NM_080744         SSC4D
5  chr9   25467075       26843472  NM_001004125         TUSC1
6  chr9   25467075       26843472  NM_001004352  LOC100506422
7  chr9   25467075       26843472  NM_001167575         CAAP1
8  chr9   25467075       26843472     NR_121604     LINC01241,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  145334757      145515872  NM_001039888       ANKRD34A
1    chr1  145334757      145515872  NM_001277444          NBPF9
2    chr1  145334757      145515872  NM_001278267         NBPF20
3    chr1  145334757      145515872  NM_001302371         NBPF10
4    chr1  145334757      145515872  NM_001313972          TXNIP
5    chr1  145334757      145515872     NM_005105          RBM8A
7    chr1  145334757      145515872     NM_032305        POLR3GL
8    chr1  145334757      145515872     NM_145277           HFE2
9    chr1  145334757      145515872     NM_153713          LIX1L
10   chr1  145334757      145515872     NR_002328         GNRHR2
13   chr1  145334757      145515872     NR_104217        NBPF25P
14   chr1  145334757      145515872     NR_125967   LOC101928979
15  chr16   85240943       85428941     NR_038859      LINC00311
16  chr16   85240943       85428941     NR_049816        MIR5093
17  chr19    9337011        9460767  NM_001079935         OR7E24
18  chr19    9337011        9460767  NM_001172650  ZNF559-ZNF177
19  chr19    9337011        9460767  NM_001202406         ZNF559
22  chr19    9337011        9460767     NM_198535         ZNF699
23   chr6  144706766      144816074     NM_007124           UTRN
24   chr6  144706766      144816074     NR_132778        SNORA98
25   chr7  142985537      143086663     NM_000083          CLCN1
26   chr7  142985537      143086663     NM_001224          CASP2
27   chr7  142985537      143086663  NM_001278297        FAM131B
28   chr7  142985537      143086663  NM_001322263   LOC100507507
29   chr7  142985537      143086663     NM_003461            ZYX
32   chr7  142985537      143086663     NR_106952        MIR6892,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr4   69221416       69364883  NM_014058  TMPRSS11E
1  chr7    8688323        8895789  NM_152745      NXPH1,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr20   40990835       41091917  NM_133170     PTPRT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr18   24746594       24847836  NM_001256316         CHST9
1    chr7   64033161       64452280  NM_001007253        ERV3-1
2    chr7   64033161       64452280  NM_001160183        ZNF138
3    chr7   64033161       64452280  NM_001282360        ZNF107
4    chr7   64033161       64452280     NM_015852        ZNF117
5    chr7   64033161       64452280     NM_021148        ZNF273
6    chr7   64033161       64452280     NR_033245     LOC641746
8    chr7   64033161       64452280     NR_077227  LOC100128885
10   chr7   64033161       64452280     NR_106898       MIR6839
11   chr7   68717145       69136264  NM_001127231         AUTS2
13   chr7   68717145       69136264     NR_108105  LOC100507468
14   chr9   41505645       41710863  NM_001113541     SPATA31A5
15   chr9   41505645       41710863     NM_015667     SPATA31A7
16   chr9   41505645       41710863     NR_003528       ZNF658B
17   chr9   41505645       41710863     NR_026803       FAM74A1,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr4   94200127       94705325  NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   23416040       23727244     NR_107021       MIR8054
1   chr15   30298085       30536771  NM_001282472       GOLGA8J
2   chr15   30298085       30536771     NR_026771  DKFZP434L187
3   chr15   30298085       30536771     NR_026859        ULK4P3
4   chr15   30298085       30536771     NR_033933       GOLGA8T
5   chr19    1079614        1255951     NM_000455         STK11
6   chr19    1079614        1255951  NM_001001975         ATP5D
7   chr19    1079614        1255951  NM_001039848          GPX4
8   chr19    1079614        1255951  NM_001100122         SBNO2
9   chr19    1079614        1255951  NM_001258328      ARHGAP45
12  chr19    1079614        1255951  NM_001316323        POLR2E
17  chr19    1079614        1255951     NM_152769         CBARP
18  chr19    1079614        1255951     NM_177401          MIDN
19  chr20   14655151       14755310     NM_080676       MACROD2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12  130212512      130419868     NM_133448   TMEM132D
1   chr16   16444307       16580816  NM_001282511     NPIPA8
2   chr16   16444307       16580816     NR_036447     PKD1P1
3   chr16   16444307       16580816     NR_106971  MIR6511A4
4   chr17   14077153       14594415  NM_001007530     CDRT15
5   chr17   14077153       14594415     NM_001303      COX10
6   chr17   14077153       14594415     NM_006041   HS3ST3B1
7   chr17   14077153       14594415     NR_026880   MGC12916
8    chr2   25004274       25147005  NM_001013663     PTRHD1
9    chr2   25004274       25147005  NM_001320613      ADCY3
10   chr2   25004274       25147005  NM_001322101      CENPO
11   chr2  153076577      153201406     NM_052905      FMNL2
12  chr20    9025751        9218702  NM_001172646      PLCB4
14   chr3    4164491        4376667  NM_001243723     SETMAR
16   chr3   60292262       60449533  NM_001320899       FHIT
17   chr9   41453351       41631600  NM_001113541  SPATA31A5
18   chr9   41453351       41631600     NM_015667  SPATA31A7
19   chr9   41453351       41631600     NR_003528    ZNF658B
20   chr9   41453351       41631600     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   75154119       75365040  NM_001039479      AREL1
1   chr14   75154119       75365040  NM_001080408      PROX2
2   chr14   75154119       75365040  NM_001244883       DLST
3   chr14   75154119       75365040  NM_001318508       FCF1
6   chr14   75154119       75365040     NM_019589      YLPM1
7   chr20    2994779        3313168     NM_000490        AVP
8   chr20    2994779        3313168     NM_000915        OXT
9   chr20    2994779        3313168  NM_001009984  C20orf194
10  chr20    2994779        3313168  NM_001174089    SLC4A11
12  chr20    2994779        3313168  NM_001267584      UBOX5
13  chr20    2994779        3313168  NM_001267623       ITPA
14  chr20    2994779        3313168  NM_001282533      LZTS3
16  chr20    2994779        3313168     NM_002836      PTPRA
17  chr20    2994779        3313168     NM_021826    FASTKD5
18  chr20    2994779        3313168     NM_023935     DDRGK1
19  chr20    2994779        3313168     NM_030811     MRPS26
23  chr20    2994779        3313168     NM_178332      GNRH2
24  chr20    2994779        3313168     NR_038395  UBOX5-AS1
27   chr5   66246922       66720928  NM_001164664      MAST4
31   chr5   66246922       66720928     NM_005582      CD180
33   chr5   66246922       66720928     NR_111908  MAST4-AS1
34   chr9   39073962       39286083     NM_033655    CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   21197419       21344239     NR_040094  LINC01193
1   chr6   20861074       21269939     NM_017774     CDKAL1
2   chr7    2740450        2921560  NM_001282440      GNA12
4   chr7    2740450        2921560  NM_001284355       AMZ1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   25031951       25227511  NM_001198559       DNAJC27
1  chr2   25031951       25227511  NM_001320613         ADCY3
2  chr2   25031951       25227511  NM_001322101         CENPO
3  chr2   25031951       25227511     NR_034113   DNAJC27-AS1
4  chr7  123488116      123656402  NM_001174044         SPAM1
7  chr7  123488116      123656402     NM_012269         HYAL4
8  chr7  123488116      123656402     NR_133947  LOC105375483, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name          gene_name
0  chr22   17045615       17169119     NM_014406             CCT8L2
1  chr22   17045615       17169119     NR_001591             TPTEP1
2  chr22   17045615       17169119     NR_040115  ANKRD62P1-PARP4P3
3   chr6  128594386      128854606  NM_001291982              PTPRK
5   chr8  100510458      100638465     NM_017890             VPS13B
6   chr8  100510458      100638465     NR_030329             MIR599
7   chr8  100510458      100638465     NR_030596             MIR875,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr16   76593384       76904533  NM_001322181            CNTNAP4
2   chr16   76593384       76904533     NR_039870            MIR4719
3   chr16   76593384       76904533     NR_110934       LOC101928203
4    chr2   95468781       95870280  NM_001291605               ZNF2
5    chr2   95468781       95870280  NM_001318005             ZNF514
6    chr2   95468781       95870280  NM_001321995              MRPS5
7    chr2   95468781       95870280     NM_022439                MAL
9    chr2   95468781       95870280     NM_144705              TEKT4
10   chr2   95468781       95870280     NR_003366         ANKRD20A8P
11   chr2   95468781       95870280     NR_037597          LOC442028
12   chr2  234309404      235835103     NM_000463             UGT1A1
13   chr2  234309404      235835103  NM_001001394             DNAJB3
14   chr2  234309404      235835103     NM_001072             UGT1A6
15   chr2  234309404      235835103  NM_001282431              ARL4C
16   chr2  234309404      235835103  NM_001282962              HJURP
17   chr2  234309404      235835103  NM_001287395             MROH2A
18   chr2  234309404      235835103     NM_003648               DGKD
20   chr2  234309404      235835103     NM_006944               SPP2
21   chr2  234309404      235835103     NM_007120             UGT1A4
22   chr2  234309404      235835103     NM_018218              USP40
23   chr2  234309404      235835103     NM_019075            UGT1A10
24   chr2  234309404      235835103     NM_019076             UGT1A8
25   chr2  234309404      235835103     NM_019077             UGT1A7
26   chr2  234309404      235835103     NM_019078             UGT1A5
27   chr2  234309404      235835103     NM_019093             UGT1A3
28   chr2  234309404      235835103     NM_021027             UGT1A9
29   chr2  234309404      235835103     NM_024080              TRPM8
32   chr2  234309404      235835103     NR_024322             MSL3P1
33   chr2  234309404      235835103     NR_037694       LOC100286922
34   chr2  234309404      235835103     NR_132376          LINC01173
35  chr20   14759153       14860856     NM_080676            MACROD2
36  chr22   17122694       17369227     NM_175878               XKR3
37  chr22   17122694       17369227     NR_001591             TPTEP1
38  chr22   17122694       17369227     NR_003607            HSFY1P1
39  chr22   17122694       17369227     NR_040115  ANKRD62P1-PARP4P3
40  chr22   17122694       17369227     NR_134584       LOC101929350
41   chr4      83938         425513  NM_001039127             ZNF718
42   chr4      83938         425513  NM_001137608             ZNF732
43   chr4      83938         425513  NM_001286052             ZNF595
46   chr4      83938         425513     NM_003441             ZNF141
47   chr4      83938         425513     NR_002451            ABCA11P
48   chr4      83938         425513     NR_027481            ZNF876P
49   chr4      83938         425513     NR_030297             MIR571
52   chr4   68940055       69123244     NM_182502          TMPRSS11B
53   chr4   68940055       69123244     NM_207407          TMPRSS11F
54   chr4   68940055       69123244     NR_015446             FTLP10
55   chr4   68940055       69123244     NR_104048        TMPRSS11BNL
56   chr5  104377429      104522724     NR_000039            RAB9BP1
57   chr7   89226825       89560813     NR_110029         STEAP2-AS1
58   chr8   48419071       48593082  NM_001080394              SPIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63366991       63551305     NR_047029     LINC00448
3   chr16   10558196       10761588  NM_001256160       ATF7IP2
4   chr16   10558196       10761588     NM_001424          EMP2
5   chr16   10558196       10761588     NM_144674         TEKT5
7    chr2   46949987       47128552     NM_014011         SOCS5
9    chr2   46949987       47128552     NR_024452     LINC01119
10   chr2   46949987       47128552     NR_034099     LINC01118
11   chr7   64077570       64189724  NM_001282360        ZNF107
12   chr7   64077570       64189724     NR_077227  LOC100128885
14   chr7   64077570       64189724     NR_106898       MIR6839
15   chr7  110686627      110809790  NM_001099658         LRRN3
16   chr7  110686627      110809790  NM_001244606        IMMP2L
18   chr9   28664945       29363655  NM_001258282        LINGO2
20   chr9   28664945       29363655     NR_030597        MIR876
21   chr9   28664945       29363655     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   47835519       48157794  NM_001077503          TAC4
1   chr17   47835519       48157794  NM_001199158          KAT7
2   chr17   47835519       48157794  NM_001242791      FLJ45513
3   chr17   47835519       48157794     NM_001934          DLX4
4   chr17   47835519       48157794     NM_002204         ITGA3
5   chr17   47835519       48157794     NM_005220          DLX3
6   chr17   47835519       48157794     NM_030802       FAM117A
8   chr17   47835519       48157794     NR_038230     LOC284080
9    chr2   78216910       78334990     NR_110287  LOC101927948
10   chr2   78216910       78334990     NR_110288  LOC101927967,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245028091      245150288  NM_001143943        EFCAB2
3    chr1  245028091      245150288     NR_111907  LOC101928068
4   chr16   31896773       32016484  NM_001265588        ZNF267
5    chr5   99806767      100102939     NM_198507       FAM174A
6    chr8   86635885       87307414     NM_033126         PSKH2
7    chr8   86635885       87307414     NM_138817       SLC7A13
8    chr8   86635885       87307414     NM_152565      ATP6V0D2
9    chr8   86635885       87307414     NR_003594      REXO1L2P
17   chr9   39040663       39200375     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145280495      145380631  NM_001277444         NBPF9
1    chr1  145280495      145380631  NM_001278267        NBPF20
2    chr1  145280495      145380631  NM_001302371        NBPF10
3    chr1  145280495      145380631     NM_203458      NOTCH2NL
4    chr1  145280495      145380631     NR_104217       NBPF25P
5    chr1  145280495      145380631     NR_125967  LOC101928979
6   chr10   27656242       27774016  NM_001034842        PTCHD3
7   chr15  100157869      100300994  NM_001130928         MEF2A
8   chr15  100157869      100300994  NM_001284417        LYSMD4
11  chr16    6326389        6515377  NM_001308117        RBFOX1
13  chr16   21783604       21916016  NM_001310148        NPIPB4
14  chr16   21783604       21916016     NR_003370        RRN3P1
15   chr5   17491450       18337380     NR_134286     LOC646241,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   12266002       12371706     NM_032167     SNX29
1   chr2   50891451       51036923  NM_001330082     NRXN1
2   chr2   50891451       51036923     NR_130470   MIR8485
3   chr7   57295041       57551482  NM_001159279    ZNF716
4   chr7   57295041       57551482     NR_036102   MIR3147,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr22   20096722       20249988  NM_001190326      DGCR8
1   chr22   20096722       20249988  NM_001243537    CCDC188
2   chr22   20096722       20249988  NM_001278639     RANBP1
5   chr22   20096722       20249988     NM_013373     ZDHHC8
6   chr22   20096722       20249988     NM_022727     TRMT2A
7   chr22   20096722       20249988     NM_023004      RTN4R
8   chr22   20096722       20249988     NR_026919  LINC00896
9   chr22   20096722       20249988     NR_031618    MIR1286
10  chr22   20096722       20249988     NR_038460  LOC284865
11  chr22   20096722       20249988     NR_106874    MIR6816
12   chr9    9988648       10145146     NM_002839      PTPRD,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   27180527       27310785  NM_001080406  C12orf71
1  chr12   27180527       27310785  NM_001271811     MED21
2   chr3    2320059        2420078  NM_001206955     CNTN4
4   chr9   72238033       72364746  NM_001099666     PTAR1
5   chr9   72238033       72364746     NM_001163     APBA1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   83929032       84108380  NM_001080442    SLC38A8
1   chr16   83929032       84108380     NM_003791     MBTPS1
2   chr16   83929032       84108380     NM_012213      MLYCD
3   chr16   83929032       84108380     NM_019065     NECAB2
4   chr16   83929032       84108380     NM_182981     OSGIN1
5   chr22   20105474       20237801  NM_001243537    CCDC188
6   chr22   20105474       20237801  NM_001278639     RANBP1
9   chr22   20105474       20237801     NM_013373     ZDHHC8
10  chr22   20105474       20237801     NM_023004      RTN4R
11  chr22   20105474       20237801     NR_026919  LINC00896
12  chr22   20105474       20237801     NR_031618    MIR1286
13  chr22   20105474       20237801     NR_038460  LOC284865,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12824638       12937828  NM_001013631      HNRNPCL1
1    chr1   12824638       12937828  NM_001080830      PRAMEF12
2    chr1   12824638       12937828  NM_001146181      HNRNPCL3
3    chr1   12824638       12937828  NM_001146344      PRAMEF11
4    chr1   12824638       12937828  NM_001294139       PRAMEF1
5    chr1   12824638       12937828  NM_001302551      HNRNPCL4
7    chr1   12824638       12937828     NM_023014       PRAMEF2
8    chr1  187223979      187353844     NR_126347     LINC01036
9   chr13  113123404      113255546  NM_001286278       TUBGCP3
12   chr2  110180024      110305793  NM_001099289        SH3RF3
13   chr2  110180024      110305793  NM_001321504        SEPT10
15   chr4   94126423       95647852  NM_001011516        PDLIM5
16   chr4   94126423       95647852  NM_001128429      SMARCAD1
21   chr4   94126423       95647852     NM_001510         GRID2
22   chr4   94126423       95647852     NM_005172         ATOH1
23   chr4   94126423       95647852     NM_014485         HPGDS
25   chr4   94126423       95647852     NR_125922  LOC101929210
26   chr5  142410563      142510640  NM_001135608      ARHGAP26
27   chr7   64024328       64127253  NM_001282360        ZNF107
28   chr7   64024328       64127253     NR_033245     LOC641746
29   chr7   64024328       64127253     NR_077227  LOC100128885,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr3  189630511      189867428  NM_001134418          P3H2
2  chr3  189630511      189867428     NR_126419      P3H2-AS1
3  chr4  130533529      130820226     NR_110753  LOC101927282,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245025291      245134374  NM_001143943        EFCAB2
2    chr1  245025291      245134374     NM_004501        HNRNPU
4    chr1  245025291      245134374     NR_111907  LOC101928068
5   chr15   28590769       28893510     NR_033351       GOLGA8F
7   chr15   28590769       28893510     NR_033353       GOLGA8G
9   chr15   28590769       28893510     NR_039734     MIR4509-3
11  chr16   68537386       68741584  NM_001305204         ZFP90
13  chr16   68537386       68741584  NM_001317195          CDH3
14  chr20   14806956       14943556     NM_080676       MACROD2
15  chr20   14806956       14943556     NR_037841   MACROD2-AS1
17   chr5   17689880       19438401     NR_134286     LOC646241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   47968645       48323622     NM_000088        COL1A1
1   chr17   47968645       48323622  NM_001199898          PDK2
4   chr17   47968645       48323622  NM_001257359        SAMD14
5   chr17   47968645       48323622     NM_001934          DLX4
6   chr17   47968645       48323622     NM_002204         ITGA3
8   chr17   47968645       48323622     NM_005220          DLX3
9   chr17   47968645       48323622     NM_032595       PPP1R9B
11  chr17   47968645       48323622     NR_024193         HILS1
12  chr17   47968645       48323622     NR_038230     LOC284080
13  chr17   47968645       48323622     NR_110806  LOC101927230
14  chr17   47968645       48323622     NR_135553          SGCA
15   chr9   38951908       39175817     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12761577       12921133  NM_001013631      HNRNPCL1
1    chr1   12761577       12921133  NM_001080830      PRAMEF12
2    chr1   12761577       12921133  NM_001103170       AADACL3
3    chr1   12761577       12921133  NM_001146181      HNRNPCL3
4    chr1   12761577       12921133  NM_001146344      PRAMEF11
5    chr1   12761577       12921133  NM_001294139       PRAMEF1
6    chr1   12761577       12921133  NM_001302551      HNRNPCL4
8    chr1   12761577       12921133     NM_023014       PRAMEF2
9    chr1   12761577       12921133     NM_152290      C1orf158
10  chr12   16341530       16539780  NM_001170798       SLC15A5
11  chr12   16341530       16539780  NM_001267598         MGST1
16  chr22   19908105       21333371     NM_000185      SERPIND1
17  chr22   19908105       21333371     NM_000754          COMT
18  chr22   19908105       21333371  NM_001018060         AIFM3
22  chr22   19908105       21333371  NM_001190326         DGCR8
23  chr22   19908105       21333371  NM_001242313      TMEM191B
24  chr22   19908105       21333371  NM_001243537       CCDC188
25  chr22   19908105       21333371  NM_001256523         ZNF74
26  chr22   19908105       21333371  NM_001278639        RANBP1
29  chr22   19908105       21333371  NM_001282512        TXNRD2
30  chr22   19908105       21333371  NM_001283116        TANGO2
31  chr22   19908105       21333371  NM_001293236         MED15
35  chr22   19908105       21333371     NM_001670         ARVCF
36  chr22   19908105       21333371     NM_004782        SNAP29
37  chr22   19908105       21333371     NM_005207          CRKL
40  chr22   19908105       21333371     NM_013373        ZDHHC8
41  chr22   19908105       21333371     NM_015672        RIMBP3
42  chr22   19908105       21333371     NM_022727        TRMT2A
43  chr22   19908105       21333371     NM_023004         RTN4R
44  chr22   19908105       21333371     NM_033257        DGCR6L
45  chr22   19908105       21333371     NM_058004         PI4KA
46  chr22   19908105       21333371     NM_153334        SCARF2
47  chr22   19908105       21333371     NR_003563       PI4KAP1
48  chr22   19908105       21333371     NR_024592     POM121L4P
49  chr22   19908105       21333371     NR_026815      TMEM191A
50  chr22   19908105       21333371     NR_026919     LINC00896
51  chr22   19908105       21333371     NR_029706        MIR185
52  chr22   19908105       21333371     NR_031618       MIR1286
53  chr22   19908105       21333371     NR_031706       MIR1306
54  chr22   19908105       21333371     NR_033825        KLHL22
55  chr22   19908105       21333371     NR_037412       MIR3618
56  chr22   19908105       21333371     NR_038460     LOC284865
57  chr22   19908105       21333371     NR_039918       MIR4761
58  chr22   19908105       21333371     NR_106874       MIR6816
59  chr22   19908105       21333371     NR_110537  LOC101928891
60  chr22   19908105       21333371     NR_136560       FAM230A
61  chr22   19908105       21333371     NR_136569     LOC729461
62  chr22   19908105       21333371     NR_136572  LOC101927859
63   chr7   71457055       71598252  NM_001017440         CALN1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3  145814819      146162682     NM_000935     PLOD2
1  chr3  145814819      146162682  NM_001128304    PLSCR4
3  chr3  145814819      146162682  NM_001199978    PLSCR2
5  chr7  110705291      110856267  NM_001099658     LRRN3
6  chr7  110705291      110856267  NM_001244606    IMMP2L,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr1   86139587       86385324  NM_017953    ZNHIT6
1  chr1   86139587       86385324  NM_152890   COL24A1,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr5   31248785       31402638     NM_004932       CDH6
1  chr5   31248785       31402638     NM_013235     DROSHA
2  chr6   80969128       81119769     NM_000056     BCKDHB
3  chr6  162854614      163732069  NM_001080378      PACRG
5  chr6  162854614      163732069     NM_013988      PARK2
6  chr6  162854614      163732069     NR_028390  PACRG-AS1
7  chr6  162854614      163732069     NR_110871  PACRG-AS2
9  chr6  162854614      163732069     NR_122120  PACRG-AS3,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81457349       81572747  NM_001278495      NUTM2B
1   chr10   81457349       81572747     NR_120611  NUTM2B-AS1
4   chr17   47889046       48151149  NM_001077503        TAC4
5   chr17   47889046       48151149  NM_001199158        KAT7
6   chr17   47889046       48151149  NM_001242791    FLJ45513
7   chr17   47889046       48151149     NM_001934        DLX4
8   chr17   47889046       48151149     NM_002204       ITGA3
9   chr17   47889046       48151149     NM_005220        DLX3
11  chr17   47889046       48151149     NR_038230   LOC284080
12  chr18   24608648       24904463  NM_001256316       CHST9
13   chr4   94128046       94445925     NM_001510       GRID2,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  244985994      245096039  NM_001312871     COX20
2  chr1  244985994      245096039     NM_004501    HNRNPU
4  chr1  244985994      245096039     NR_132782  SNORA100
5  chr3   60021771       60131799  NM_001320899      FHIT,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr16   71130705       71237138  NM_001198542     HYDIN
3   chr17   21608034       22281878  NM_001190452  MTRNR2L1
4   chr17   21608034       22281878     NR_027084  FLJ36000
5   chr17   21608034       22281878     NR_028336   FAM27E5
6    chr2   31354464       31790961     NM_000348    SRD5A2
7    chr2   31354464       31790961     NM_000379       XDH
8    chr2   31354464       31790961  NM_001145122    CAPN14
9    chr2   31354464       31790961  NM_001253826   GALNT14
12   chr2   31354464       31790961     NM_014600      EHD3
13   chr7  110514327      110695736  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   20624522       20945536  NM_001145004  GOLGA6L6
1  chr15   20624522       20945536     NR_027411  GOLGA8CP
2  chr15   20624522       20945536     NR_027992    NBEAP1
3  chr15   20624522       20945536     NR_036432   HERC2P3
4  chr19   34606820       34788261     NM_014686  KIAA0355
5  chr19   34606820       34788261     NM_015578    LSM14A,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   20713782       21328275  NM_001145004   GOLGA6L6
1   chr15   20713782       21328275  NM_001277303     POTEB2
2   chr15   20713782       21328275     NM_207355     POTEB3
3   chr15   20713782       21328275     NR_027411   GOLGA8CP
4   chr15   20713782       21328275     NR_027992     NBEAP1
5   chr15   20713782       21328275     NR_028506      NF1P2
6   chr15   20713782       21328275     NR_036062  MIR3118-2
7   chr15   20713782       21328275     NR_040094  LINC01193
8   chr15   20713782       21328275     NR_049895  MIR5701-2
10   chr4   69241002       69573025     NM_001076    UGT2B15
11   chr4   69241002       69573025     NM_001077    UGT2B17
12   chr4   69241002       69573025     NM_014058  TMPRSS11E
13   chr9   39072814       39213635     NM_033655    CNTNAP3,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0   chr1   79058337       79178339  NM_006417      IFI44
1   chr1   79058337       79178339  NM_006820     IFI44L
3  chr18   61747304       61875621  NR_027245  LINC00305
4  chr18   61747304       61875621  NR_033881  LOC284294,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187246938      187549679     NR_126347     LINC01036
1    chr1  187246938      187549679     NR_132374     LINC01037
2   chr15   82876673       83315785  NM_001079533         CPEB1
3   chr15   82876673       83315785  NM_001164465     GOLGA6L10
5   chr15   82876673       83315785  NM_001291420      GOLGA6L9
9   chr15   82876673       83315785     NR_004847      UBE2Q2P2
10  chr15   82876673       83315785     NR_026811     GOLGA2P10
12  chr15   82876673       83315785     NR_045529     ADAMTS7P1
13  chr15   82876673       83315785     NR_102747     LOC727751
15  chr15   82876673       83315785     NR_111943         RPS17
17  chr15   82876673       83315785     NR_111962    GOLGA6L17P
18  chr15   82876673       83315785     NR_120378  LOC102724034
19  chr20   10884450       11088648     NR_109866  LOC101929413
20   chr3   76864496       77193039  NM_001128929         ROBO2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   57717109       57871225  NM_001080156    ARHGAP9
2   chr12   57717109       57871225  NM_001160045       GLI1
5   chr12   57717109       57871225  NM_001330122     R3HDM2
6   chr12   57717109       57871225     NM_005538      INHBC
8   chr12   57717109       57871225     NM_031479      INHBE
10  chr13   53996249       54587478     NR_047488  LINC00558
11  chr14   42219883       42559529  NM_001346175      LRFN5
12  chr15   79704942       79812297  NM_001330376      TMED3
13  chr15   79704942       79812297     NM_015206   KIAA1024
14  chr16    7005335        7354177  NM_001142334     RBFOX1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   21488825       21599667     NR_002594   SLC7A5P2
1  chr16   21488825       21599667     NR_027155     SMG1P3
2  chr16   21488825       21599667     NR_049833  MIR3680-2
3  chr20   14716049       14861253     NM_080676    MACROD2
4   chr7   80095255       80224229  NM_001102386      GNAT3
5   chr7  110631467      110834874  NM_001099658      LRRN3
6   chr7  110631467      110834874  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   10840304       10972446     NR_109866  LOC101929413
1   chr22   20076456       20194472  NM_001190326         DGCR8
2   chr22   20076456       20194472  NM_001243537       CCDC188
3   chr22   20076456       20194472  NM_001278639        RANBP1
6   chr22   20076456       20194472     NM_013373        ZDHHC8
7   chr22   20076456       20194472     NM_022727        TRMT2A
8   chr22   20076456       20194472     NR_026919     LINC00896
9   chr22   20076456       20194472     NR_038460     LOC284865
10  chr22   20076456       20194472     NR_106874       MIR6816
11   chr6  162268238      162418543     NM_013988         PARK2
12   chr8   58048265       59423572     NM_000780        CYP7A1
13   chr8   58048265       59423572  NM_001077619        UBXN2B
15   chr8   58048265       59423572     NM_147189       FAM110B
16   chr8   58048265       59423572     NR_026772     LINC00588
17   chr8   58048265       59423572     NR_038235     LINC01606
18   chr8   58048265       59423572     NR_038874     LOC286177
19   chr8   58048265       59423572     NR_105005  LOC101929528
20   chr8   58048265       59423572     NR_125818  LOC101929488
21   chr8   58048265       59423572     NR_130934     LINC01602
22   chr8   58048265       59423572     NR_134276     LOC286178
23   chr9   38974214       39076813     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr2   24996411       25109681  NM_001013663    PTRHD1
1   chr2   24996411       25109681  NM_001320613     ADCY3
2   chr2   24996411       25109681  NM_001322101     CENPO
3  chr20   14641108       14774302     NM_080676   MACROD2
4   chr9   38983283       39092366     NM_033655   CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr2   52276028       52380736     NR_135237  LOC730100
1   chr4   71406245       71703478  NM_001037442      RUFY3
2   chr4   71406245       71703478  NM_001098477      GRSF1
8   chr4   71406245       71703478     NM_016519       AMBN
9   chr4   71406245       71703478     NM_020368       UTP3
10  chr4   71406245       71703478     NM_031889       ENAM
11  chr4   71406245       71703478     NM_144646     JCHAIN
12  chr4  118852988      119155729     NM_004784      NDST3
13  chr8   87922539       88274654     NM_173538      CNBD1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  244987857      245215963  NM_001143943        EFCAB2
2  chr1  244987857      245215963  NM_001312871         COX20
4  chr1  244987857      245215963     NM_004501        HNRNPU
7  chr1  244987857      245215963     NR_111907  LOC101928068
8  chr1  244987857      245215963     NR_132782      SNORA100
9  chr5   99707112       99830454     NR_027503  LOC100133050,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr5   16908700       17025102  NM_012334     MYO10,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   52161991       52377615     NR_135237     LOC730100
1   chr7  143035774      143268795     NM_000083         CLCN1
2   chr7  143035774      143268795  NM_001278297       FAM131B
3   chr7  143035774      143268795  NM_001322263  LOC100507507
4   chr7  143035774      143268795     NM_003461           ZYX
5   chr7  143035774      143268795     NM_005232         EPHA1
7   chr7  143035774      143268795     NM_176883       TAS2R41
8   chr7  143035774      143268795     NM_177437       TAS2R60
9   chr7  143035774      143268795     NR_033897     EPHA1-AS1
10  chr7  143035774      143268795     NR_106952       MIR6892
11  chr8    4165814        4323885     NM_033225         CSMD1
12  chr8   83485955       84217612     NR_134295  LOC101927141
13  chr9   41634279       42219341     NR_003670        FGF7P3
14  chr9   41634279       42219341     NR_015363         GLIDR
17  chr9   41634279       42219341     NR_126048  LOC102724238
18  chr9   41634279       42219341     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr22   20150349       20259432  NM_023004      RTN4R
1  chr22   20150349       20259432  NR_026919  LINC00896
2  chr22   20150349       20259432  NR_031618    MIR1286
3  chr22   20150349       20259432  NR_038460  LOC284865, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10    5115904        5434169  NM_001253908    AKR1C3
2   chr10    5115904        5434169     NM_001818    AKR1C4
4   chr10    5115904        5434169     NM_053049      UCN3
5   chr10    5115904        5434169     NR_027916   AKR1C8P
6   chr14   42108704       42349773  NM_001346175     LRFN5
7   chr15   28306155       28518800     NM_000275      OCA2
9   chr15   28306155       28518800     NM_004667     HERC2
10   chr2   50808593       51049611  NM_001330082     NRXN1
11   chr2   50808593       51049611     NR_130470   MIR8485
12   chr2  236698482      236806230  NM_001244888     AGAP1,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr10   81453963       81562314  NM_001278495      NUTM2B
1  chr10   81453963       81562314     NR_120611  NUTM2B-AS1
4  chr11   31378311       31540628  NM_001304274      IMMP1L
5  chr11   31378311       31540628     NM_019040        ELP4
6  chr11   31378311       31540628     NM_181706     DNAJC24
7  chr11   31378311       31540628     NM_181807       DCDC1
8   chr7  110507969      110865723  NM_001099658       LRRN3
9   chr7  110507969      110865723  NM_001244606      IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1   72335648       72438971     NM_173808     NEGR1
1  chr7  110473705      110634888  NM_001244606    IMMP2L
3  chr8   97733588       97869292     NM_016134       CPQ,   chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr1  142665975      142815690     NR_046228  ANKRD20A12P
1  chr2  235265360      235497730  NM_001282431        ARL4C
3  chr5   63157906       63293145     NM_000524        HTR1A
4  chr5  119916614      120058193  NM_001300783        PRR16,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   12842399       12954043  NM_001009611   PRAMEF4
1    chr1   12842399       12954043  NM_001013631  HNRNPCL1
2    chr1   12842399       12954043  NM_001146181  HNRNPCL3
3    chr1   12842399       12954043  NM_001146344  PRAMEF11
4    chr1   12842399       12954043  NM_001294139   PRAMEF1
5    chr1   12842399       12954043  NM_001302551  HNRNPCL4
7    chr1   12842399       12954043     NM_023014   PRAMEF2
8   chr11  131432389      131611799  NM_001048209       NTM
9   chr11  131432389      131611799     NR_126159   NTM-AS1
10   chr7  152378014      152514042     NM_020445    ACTR3B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68587973       69931082  NM_001127384        CTNNA3
1   chr10   68587973       69931082  NM_001142498         SIRT1
2   chr10   68587973       69931082  NM_001256267          MYPN
4   chr10   68587973       69931082  NM_001278187         HERC4
9   chr10   68587973       69931082     NM_021800       DNAJC12
11  chr10   68587973       69931082     NM_178011        LRRTM3
13  chr10   68587973       69931082     NR_106973       MIR7151
15  chr10   68587973       69931082     NR_111911  LOC101928961
16  chr10   68587973       69931082     NR_131184      POU5F1P5
17  chr15   30279604       30385308  NM_001282472       GOLGA8J
18   chr3   60277960       60391250  NM_001320899          FHIT
19   chr7    6904812        7160212     NR_034022  LOC100131257
20   chr7    6904812        7160212     NR_037454       MIR3683,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   68572629       68837102  NM_001305204         ZFP90
2   chr16   68572629       68837102  NM_001317184          CDH1
3   chr16   68572629       68837102  NM_001317195          CDH3
4   chr16   68572629       68837102     NR_106988     MIR7641-2
5    chr2   97171078       97341434  NM_001115016        KANSL3
6    chr2   97171078       97341434  NM_001285485        NEURL3
7    chr2   97171078       97341434  NM_001293083        FER1L5
8    chr2   97171078       97341434  NM_001319085        ARID5A
12   chr2   97171078       97341434     NR_135564  LOC105373496
13   chr7   71491581       71648175  NM_001017440         CALN1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81470860       81571117  NM_001278495      NUTM2B
1   chr10   81470860       81571117     NR_120611  NUTM2B-AS1
4   chr11    4549988        4679171  NM_001004137      OR52M1
5   chr11    4549988        4679171  NM_001004751      OR51D1
6   chr11    4549988        4679171  NM_001005169      OR52I1
7   chr11    4549988        4679171  NM_001005170      OR52I2
8   chr11    4549988        4679171     NM_018073      TRIM68
9   chr11    4549988        4679171     NM_144663    C11orf40
10  chr11    4549988        4679171     NM_152430      OR51E1
11  chr16    6768639        7803590  NM_001142334      RBFOX1
15  chr20   21906667       22060783     NR_038394   LINC01432
16   chr5  154164004      154379330  NM_001014990      MRPL22
17   chr5  154164004      154379330  NM_001301074       CNOT8
20   chr5  154164004      154379330     NM_015315       LARP1
21   chr5  154164004      154379330     NM_015465      GEMIN5
22   chr5  154164004      154379330     NM_032385      FAXDC2
23   chr5  154164004      154379330     NR_039667     MIR378H,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145259286      145379736  NM_001277444         NBPF9
1    chr1  145259286      145379736  NM_001278267        NBPF20
2    chr1  145259286      145379736  NM_001302371        NBPF10
3    chr1  145259286      145379736     NM_203458      NOTCH2NL
4    chr1  145259286      145379736     NR_104217       NBPF25P
5    chr1  145259286      145379736     NR_125967  LOC101928979
6   chr11   89082112       90100993  NM_001105522      TRIM49D2
8   chr11   89082112       90100993  NM_001136486        TRIM64
9   chr11   89082112       90100993  NM_001143837          NOX4
10  chr11   89082112       90100993  NM_001143975        UBTFL1
11  chr11   89082112       90100993  NM_001144073       CHORDC1
12  chr11   89082112       90100993  NM_001164397       TRIM64B
13  chr11   89082112       90100993  NM_001195234       TRIM49C
14  chr11   89082112       90100993  NM_001206627      TRIM49D1
16  chr11   89082112       90100993  NM_001271942        TRIM77
21  chr11   89082112       90100993     NM_005467       NAALAD2
22  chr11   89082112       90100993     NM_020358        TRIM49
23  chr11   89082112       90100993     NM_153696        FOLH1B
24  chr11   89082112       90100993     NR_028346      TRIM53AP
26  chr11   89082112       90100993     NR_104190      DISC1FP1
28  chr13   41354358       41542575  NM_001145353          ELF1
29  chr13   41354358       41542575     NM_014252      SLC25A15
31  chr13   41354358       41542575     NR_003365       SUGT1P3
32  chr13   41354358       41542575     NR_030352        MIR621
33  chr13   41354358       41542575     NR_038259       TPTE2P5
34   chr9   67115339       67301783     NR_002817        AQP7P1
35   chr9   67115339       67301783     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   28193275       28432188  NM_000275      OCA2
2  chr15   28193275       28432188  NM_004667     HERC2
3  chr18   64253672       64655155  NM_021153     CDH19
4   chr6  162585046      162777000  NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63325926       63507041     NR_047029  LINC00448
3   chr22   18981896       19117216  NM_001184781      DGCR2
4   chr22   18981896       19117216     NR_002733      DGCR5
5   chr22   18981896       19117216     NR_024157     DGCR11
6   chr22   18981896       19117216     NR_024159      DGCR9
7   chr22   18981896       19117216     NR_026651     DGCR10
9    chr7  110443748      110630691  NM_001244606     IMMP2L
11   chr7  110713304      111065419  NM_001099658      LRRN3
12   chr7  110713304      111065419  NM_001244606     IMMP2L
14   chr8   15275959       15468931     NM_006765      TUSC3, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr13   67245069       67419757  NM_020403      PCDH9
1  chr13   67245069       67419757  NR_046527  PCDH9-AS2
2   chr3  162885317      163005027  NR_033945  LINC01192
3   chr7    8733967        8886803  NM_152745      NXPH1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  245052568      245205934  NM_001143943        EFCAB2
3  chr1  245052568      245205934     NR_111907  LOC101928068
4  chr5   13259405       13853809     NM_001369         DNAH5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152969519      153142440  NM_001014291        SPRR2G
1    chr1  152969519      153142440  NM_001014450        SPRR2F
2    chr1  152969519      153142440  NM_001017418        SPRR2B
3    chr1  152969519      153142440  NM_001024209        SPRR2E
4    chr1  152969519      153142440     NM_003125        SPRR1B
5    chr1  152969519      153142440     NM_005416         SPRR3
6    chr1  152969519      153142440     NM_005988        SPRR2A
7    chr1  152969519      153142440     NM_006945        SPRR2D
8    chr1  152969519      153142440     NR_003062        SPRR2C
9   chr16   21468083       21672281  NM_001077180        METTL9
11  chr16   21468083       21672281     NM_005849         IGSF6
12  chr16   21468083       21672281     NR_002594      SLC7A5P2
13  chr16   21468083       21672281     NR_027155        SMG1P3
14  chr16   21468083       21672281     NR_049833     MIR3680-2
15  chr16   21468083       21672281     NR_110930  LOC101927814
16   chr4  169196517      169319368  NM_001012967        DDX60L
18   chr4  169196517      169319368     NM_017631         DDX60
19   chr7   64105594       64217895  NM_001282360        ZNF107
21   chr7   64105594       64217895     NR_106898       MIR6839
22   chr9   41900502       42056851     NR_003670        FGF7P3
23   chr9   41900502       42056851     NR_015363         GLIDR
26   chr9   41900502       42056851     NR_126048  LOC102724238
27   chr9   41900502       42056851     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   56512881       56664264  NM_001142770        PCDH15
3   chr4  108704511      108816528  NM_001136258         SGMS2
5   chr4  108704511      108816528     NR_125929  LOC101929595,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81452955       81725212  NM_001278495        NUTM2B
1   chr10   81452955       81725212     NM_003019         SFTPD
2   chr10   81452955       81725212     NR_002724         MBL1P
3   chr10   81452955       81725212     NR_029407     LOC642361
4   chr10   81452955       81725212     NR_033857       BMS1P21
5   chr10   81452955       81725212     NR_120611    NUTM2B-AS1
8   chr16   12286554       12404570     NM_032167         SNX29
9    chr2  202181660      202607667  NM_001044385       TMEM237
10   chr2  202181660      202607667  NM_001168216      ALS2CR11
12   chr2  202181660      202607667  NM_001206864        STRADB
13   chr2  202181660      202607667     NM_015049         TRAK2
14   chr2  202181660      202607667     NM_020919          ALS2
15   chr2  202181660      202607667     NM_033066          MPP4
17   chr2  202181660      202607667     NR_110620      ALS2CR12
18  chr20   14635755       14792390     NM_080676       MACROD2
19   chr7   64054188       64279091  NM_001160183        ZNF138
20   chr7   64054188       64279091  NM_001282360        ZNF107
22   chr7   64054188       64279091     NR_077227  LOC100128885
24   chr7   64054188       64279091     NR_106898       MIR6839
25   chr8   48415922       48551240  NM_001080394         SPIDR
26   chr8   57826504       60634930     NM_000780        CYP7A1
27   chr8   57826504       60634930  NM_001077619        UBXN2B
28   chr8   57826504       60634930  NM_001144772         NSMAF
30   chr8   57826504       60634930  NM_001330537         SDCBP
33   chr8   57826504       60634930     NM_014729           TOX
34   chr8   57826504       60634930     NM_017813        IMPAD1
35   chr8   57826504       60634930     NM_147189       FAM110B
36   chr8   57826504       60634930     NR_026772     LINC00588
37   chr8   57826504       60634930     NR_038235     LINC01606
38   chr8   57826504       60634930     NR_038874     LOC286177
39   chr8   57826504       60634930     NR_105005  LOC101929528
40   chr8   57826504       60634930     NR_125818  LOC101929488
41   chr8   57826504       60634930     NR_130934     LINC01602
42   chr8   57826504       60634930     NR_134276     LOC286178,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21766845       21993659  NM_001161683          OTOA
1   chr16   21766845       21993659  NM_001310148        NPIPB4
2   chr16   21766845       21993659     NM_003366        UQCRC2
5   chr16   21766845       21993659     NR_003370        RRN3P1
6    chr2   63220995       63952652  NM_001042692         WDPCP
7    chr2   63220995       63952652  NM_001142614         EHBP1
9    chr2   63220995       63952652  NM_001199112          MDH1
10   chr2   63220995       63952652  NM_001199770          OTX1
14   chr2   63220995       63952652     NR_027069  LOC100132215
16   chr2   63220995       63952652     NR_036635       DBIL5P2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102365150      102524862     NR_110211         OLFM3
1   chr14   80029238       80137682  NM_001272020         NRXN3
4   chr17   47947849       48171903     NM_001934          DLX4
5   chr17   47947849       48171903     NM_002204         ITGA3
6   chr17   47947849       48171903     NM_005220          DLX3
8   chr17   47947849       48171903     NR_038230     LOC284080
9    chr7  143076752      143222047  NM_001322263  LOC100507507
10   chr7  143076752      143222047     NM_003461           ZYX
11   chr7  143076752      143222047     NM_005232         EPHA1
12   chr7  143076752      143222047     NM_176883       TAS2R41
13   chr7  143076752      143222047     NM_177437       TAS2R60
14   chr7  143076752      143222047     NR_033897     EPHA1-AS1
15   chr7  143076752      143222047     NR_106952       MIR6892,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr2  108755623      108887424  NM_001008743    SULT1C3
2  chr2  108755623      108887424     NR_131251  LINC01594
3  chr9   28531399       28672512  NM_001258282     LINGO2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr22   20151165       20285139     NM_023004      RTN4R
1   chr22   20151165       20285139     NR_026919  LINC00896
2   chr22   20151165       20285139     NR_031618    MIR1286
3   chr22   20151165       20285139     NR_038460  LOC284865
4    chr3   41303092       41644667  NM_001322500       ULK4
6    chr5  154223636      154652183  NM_001014990     MRPL22
7    chr5  154223636      154652183  NM_001099293      KIF4B
8    chr5  154223636      154652183  NM_001301074      CNOT8
11   chr5  154223636      154652183     NM_015465     GEMIN5
12   chr5  154223636      154652183     NM_032385     FAXDC2
13   chr6  162723532      162852207     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   55830934       55950596  NM_001003750      OR8I2
1   chr11   55830934       55950596  NM_001004058      OR8K5
2   chr11   55830934       55950596  NM_001004064      OR8J3
3   chr11   55830934       55950596  NM_001005200      OR8H2
4   chr11   55830934       55950596  NM_001005201      OR8H3
5   chr11   55830934       55950596  NM_001005492      OR5J2
6   chr13   80784609       80914368  NM_001318536      SPRY2
9   chr17    5536078        5766077     NR_040000  LOC339166
10   chr2  235278170      235407161  NM_001282431      ARL4C
12   chr4   71336079       71481948  NM_001145006       MUC7
14   chr4   71336079       71481948  NM_001286731       AMTN
15   chr4   71336079       71481948     NM_016519       AMBN
17   chr6    4292969        4482100     NR_106988  MIR7641-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   54863862       55709792     NR_031628       MIR1297
1   chr14   79541372       80107509  NM_001272020         NRXN3
4   chr14   79541372       80107509     NR_135159  LOC105370586
5   chr15   30222710       30361871  NM_001301025          TJP1
6   chr15   59979757       61501186  NM_001018089          ICE2
8   chr15   59979757       61501186  NM_001320674         BNIP2
10  chr15   59979757       61501186     NM_004039         ANXA2
11  chr15   59979757       61501186     NM_012182         FOXB1
12  chr15   59979757       61501186     NM_134260          RORA
15  chr15   59979757       61501186     NR_120318      RORA-AS2
16  chr15   59979757       61501186     NR_120339      RORA-AS1
19  chr20    8553518        8661367     NM_015192         PLCB1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   97400738       97552123     NM_000110          DPYD
1    chr1  189903240      190171063  NM_001317188        BRINP3
3   chr13   63334692       63677926     NR_047029     LINC00448
6    chr2  110154450      110343112  NM_001099289        SH3RF3
7    chr2  110154450      110343112  NM_001321504        SEPT10
9   chr22   20153988       20284246     NM_023004         RTN4R
10  chr22   20153988       20284246     NR_026919     LINC00896
11  chr22   20153988       20284246     NR_031618       MIR1286
12  chr22   20153988       20284246     NR_038460     LOC284865
13   chr3  131326962      131498572  NM_001289112         CPNE4
16   chr4   69266752       69515749     NM_001076       UGT2B15
17   chr4   69266752       69515749     NM_001077       UGT2B17
18   chr4   69266752       69515749     NM_014058     TMPRSS11E
19   chr9   95639125       95840395  NM_001007101        ZNF484
20   chr9   95639125       95840395  NM_001083536          FGD3
22   chr9   95639125       95840395  NM_001287005         SUSD3
24   chr9   95639125       95840395     NR_111003     LOC642943
25   chr9   95639125       95840395     NR_121565  LOC101927954,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   83690266       83940593  NM_001142699      DLG2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28203557       28371843     NM_000275          OCA2
2   chr15   28203557       28371843     NM_004667         HERC2
3   chr15   30266351       30729838  NM_001282472       GOLGA8J
4   chr15   30266351       30729838  NM_001282484       GOLGA8R
5   chr15   30266351       30729838     NM_139320      CHRFAM7A
6   chr15   30266351       30729838     NR_026771  DKFZP434L187
7   chr15   30266351       30729838     NR_026859        ULK4P3
8   chr15   30266351       30729838     NR_033933       GOLGA8T
9   chr17   29385408       29540660     NM_000267           NF1
11  chr17   29385408       29540660     NR_039886       MIR4733
12   chr3  105486921      105913494  NM_001321786          CBLB
18   chr5  152201278      152324441     NR_109877     LINC01470
19   chr6    5115389        5578249  NM_001164840         LYRM4
21   chr6    5115389        5578249  NM_001318872         FARS2
24   chr6    5115389        5578249     NR_037462       MIR3691
25   chr6    5115389        5578249     NR_125846  LOC101927972
26   chr6    5115389        5578249     NR_126015     LYRM4-AS1
28   chr7   64102378       64616919  NM_001007253        ERV3-1
29   chr7   64102378       64616919  NM_001160183        ZNF138
30   chr7   64102378       64616919  NM_001282360        ZNF107
31   chr7   64102378       64616919     NM_015852        ZNF117
32   chr7   64102378       64616919     NM_021148        ZNF273
33   chr7   64102378       64616919     NR_033416        CCT6P3
36   chr7   64102378       64616919     NR_106898       MIR6839
37   chr7  110553464      110732740  NM_001099658         LRRN3
38   chr7  110553464      110732740  NM_001244606        IMMP2L
40   chr7  146524326      147171236     NM_014141       CNTNAP2
41   chr7  146524326      147171236     NR_031645      MIR548F4
42   chr7  146524326      147171236     NR_110829  LOC101928700,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   20060887       20206317  NM_001190326         DGCR8
1   chr22   20060887       20206317  NM_001243537       CCDC188
2   chr22   20060887       20206317  NM_001278639        RANBP1
5   chr22   20060887       20206317     NM_013373        ZDHHC8
6   chr22   20060887       20206317     NM_022727        TRMT2A
7   chr22   20060887       20206317     NR_026919     LINC00896
8   chr22   20060887       20206317     NR_031706       MIR1306
9   chr22   20060887       20206317     NR_037412       MIR3618
10  chr22   20060887       20206317     NR_038460     LOC284865
11  chr22   20060887       20206317     NR_106874       MIR6816
12   chr9   66944063       67072716     NR_046175     LOC286297
13   chr9   66944063       67072716     NR_135597  LOC101928195
14   chr9   66944063       67072716     NR_136299  LOC101929583,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   49049475       49309006     NM_181446          FSHR
1   chr2   49049475       49309006     NR_107011      MIR548BA
2   chr2   97173180       97350554  NM_001115016        KANSL3
3   chr2   97173180       97350554  NM_001293083        FER1L5
4   chr2   97173180       97350554  NM_001319085        ARID5A
7   chr2   97173180       97350554     NR_104346        NEURL3
8   chr2   97173180       97350554     NR_135564  LOC105373496
9   chr8   58141763       58439110     NR_026772     LINC00588
10  chr8   58141763       58439110     NR_038235     LINC01606
11  chr8   58141763       58439110     NR_038874     LOC286177
12  chr8   58141763       58439110     NR_125818  LOC101929488,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   20708511       20828222  NM_001145004  GOLGA6L6
1   chr15   20708511       20828222     NR_027411  GOLGA8CP
2   chr15   20708511       20828222     NR_036432   HERC2P3
3   chr19   57929602       58105939  NM_001023561    ZNF749
4   chr19   57929602       58105939  NM_001098491    ZNF419
5   chr19   57929602       58105939  NM_001144068    ZNF772
6   chr19   57929602       58105939  NM_001199295    ZNF549
7   chr19   57929602       58105939  NM_001277090    ZNF550
8   chr19   57929602       58105939  NM_001304334    ZNF773
10  chr19   57929602       58105939  NM_001321145      ZIK1
11  chr19   57929602       58105939  NM_001330617     ZNF17
13  chr19   57929602       58105939     NM_017879    ZNF416
14  chr19   57929602       58105939     NM_020633     VN1R1
16   chr6  129264288      129607522  NM_001079823     LAMA2
17   chr7   80104080       80246000  NM_001001547      CD36
18   chr7   80104080       80246000  NM_001102386     GNAT3,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr1  143106208      143378465  NR_110761  LOC102723769
1  chr4   93266573       93556607  NM_001510         GRID2
2  chr5  110316639      110426371  NM_033035          TSLP, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  237533780      237964672     NM_001035          RYR2
1    chr1  237533780      237964672     NR_039626       MIR4428
2   chr11   89137516       89270068  NM_001143837          NOX4
8   chr14   45530528       45630687  NM_001308120       FAM179B
9   chr14   45530528       45630687  NM_001308133         FANCM
11  chr14   45530528       45630687     NM_002013         FKBP3
12  chr14   45530528       45630687     NM_017922        PRPF39
13  chr14   45530528       45630687     NR_003691      SNORD127
14   chr5   99624008       99822771     NR_027503  LOC100133050,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   88481137       88581394  NM_001127464     ZNF469
1   chr16   88481137       88581394     NM_153813      ZFPM1
2   chr16   88481137       88581394     NR_049821    MIR5189
3   chr19   47793020       47952362  NM_001009813      MEIS3
4   chr19   47793020       47952362  NM_001271749      C5AR2
8   chr19   47793020       47952362     NM_001736      C5AR1
9   chr19   47793020       47952362     NM_014681      DHX34
10  chr19   47793020       47952362     NM_015063     SLC8A2
12   chr4   69224647       69555915     NM_001076    UGT2B15
13   chr4   69224647       69555915     NM_001077    UGT2B17
14   chr4   69224647       69555915     NM_014058  TMPRSS11E
15   chr9   39121767       39237861     NM_033655    CNTNAP3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr7   12245170       12353401  NM_001134232  TMEM106B
1  chr7   18433099       18598967  NM_001204144     HDAC9,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr4    9046099        9474984  NM_001040448       DEFB131
1   chr4    9046099        9474984  NM_001242326      USP17L25
9   chr4    9046099        9474984  NM_001256852      USP17L10
10  chr4    9046099        9474984  NM_001256853      USP17L12
12  chr4    9046099        9474984  NM_001256854      USP17L11
15  chr4    9046099        9474984  NM_001256855      USP17L13
16  chr4    9046099        9474984  NM_001256857      USP17L17
17  chr4    9046099        9474984  NM_001256860      USP17L19
18  chr4    9046099        9474984  NM_001256861      USP17L20
19  chr4    9046099        9474984  NM_001256894      USP17L15
20  chr4    9046099        9474984     NR_027279      USP17L6P
21  chr4    9046099        9474984     NR_046416      USP17L9P
22  chr6  162503959      162719955     NM_013988         PARK2
23  chr7   64064272       64165053  NM_001282360        ZNF107
24  chr7   64064272       64165053     NR_077227  LOC100128885
26  chr7   64064272       64165053     NR_106898       MIR6839,   chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr4   69316654       69438449  NM_001077    UGT2B17
1  chr4   69316654       69438449  NM_014058  TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145342730      145491510  NM_001039888      ANKRD34A
1    chr1  145342730      145491510  NM_001277444         NBPF9
2    chr1  145342730      145491510  NM_001278267        NBPF20
3    chr1  145342730      145491510  NM_001302371        NBPF10
4    chr1  145342730      145491510  NM_001313972         TXNIP
6    chr1  145342730      145491510     NM_032305       POLR3GL
7    chr1  145342730      145491510     NM_145277          HFE2
8    chr1  145342730      145491510     NM_153713         LIX1L
9    chr1  145342730      145491510     NR_104217       NBPF25P
10   chr1  145342730      145491510     NR_125967  LOC101928979
11  chr11   25095461       25220476  NM_001009909         LUZP2
12   chr4  169246966      169459917  NM_001012967        DDX60L
13   chr4  169246966      169459917  NM_001166108         PALLD
15   chr7  110571634      110677932  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr17   63425148       64648013     NM_000042       APOH
1   chr17   63425148       64648013  NM_001037325     CEP112
4   chr17   63425148       64648013     NM_002737      PRKCA
5   chr17   63425148       64648013     NM_004655      AXIN2
6   chr17   63425148       64648013     NR_110822  PRKCA-AS1
7   chr17   63425148       64648013     NR_131984     CRAT40
8   chr18   24549188       24655984  NM_001256316      CHST9
9    chr7   64113718       64348622  NM_001160183     ZNF138
10   chr7   64113718       64348622  NM_001282360     ZNF107
13   chr7   64113718       64348622     NR_106898    MIR6839
14   chr8    4166208        4460284     NM_033225      CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68036795       69472285  NM_001127384        CTNNA3
3   chr10   68036795       69472285     NM_178011        LRRTM3
4   chr10   68036795       69472285     NR_106973       MIR7151
6   chr10   68036795       69472285     NR_111911  LOC101928961
7   chr11   40312596       40414716  NM_001258419        LRRC4C
9   chr14   19881601       20011041  NM_001145442         POTEM
10  chr14   19881601       20011041     NR_073459       BMS1P18
11  chr14   19881601       20011041     NR_110505  LOC100508046
12  chr14   19881601       20011041     NR_110526       DUXAP10
13  chr14   19881601       20011041     NR_122111     LINC01296
15  chr14   19881601       20011041     NR_133911       BMS1P22
16  chr15   26992938       27275341     NM_000810        GABRA5
18  chr15   26992938       27275341  NM_001270873        GABRG3
19  chr15   26992938       27275341  NM_001278631        GABRB3
22   chr9   67092881       67299855     NR_002817        AQP7P1
23   chr9   67092881       67299855     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   89699695       89816187  NM_001136486    TRIM64
1   chr11   89699695       89816187  NM_001195234   TRIM49C
2   chr11   89699695       89816187     NR_028346  TRIM53AP
3   chr19   24260745       24483512  NM_001278661    ZNF254
6   chr19   24260745       24483512     NR_003603  HAVCR1P1
7    chr9   28695419       29063809  NM_001258282    LINGO2
9    chr9   28695419       29063809     NR_030597    MIR876
10   chr9   28695419       29063809     NR_030618    MIR873,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr9   44291626       44407993  NR_121564  LOC101927827
1  chr9   44291626       44407993  NR_126050  LOC103908605,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143717101      143862305  NM_001123068       PPIAL4G
1  chr1  143717101      143862305     NR_104014     LINC01138
2  chr1  143717101      143862305     NR_111930  LOC100132057
3  chr7  110645866      110765577  NM_001099658         LRRN3
4  chr7  110645866      110765577  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr15   28317631       28606340     NM_000275      OCA2
2   chr15   28317631       28606340     NM_004667     HERC2
3   chr16   68787129       68994595  NM_001317184      CDH1
4   chr16   68787129       68994595     NM_024562    TANGO6
5    chr2   97203175       97503033  NM_001115016    KANSL3
6    chr2   97203175       97503033  NM_001293083    FER1L5
7    chr2   97203175       97503033  NM_001319085    ARID5A
9    chr2   97203175       97503033  NM_001322354    LMAN2L
10   chr2   97203175       97503033     NM_017623     CNNM3
11   chr2   97203175       97503033     NM_020184     CNNM4
13   chr2   97203175       97503033     NR_036074   MIR3127
15   chr4    3884691        3986063     NR_130741   FAM86EP
16   chr4   94201920       94302654     NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241484458      241712564     NM_000143            FH
1    chr1  241484458      241712564  NM_001282773          RGS7
2    chr1  241484458      241712564     NM_003679           KMO
3   chr10   67953067       68102648  NM_001127384        CTNNA3
5   chr10   81494024       81767437     NM_003019         SFTPD
6   chr10   81494024       81767437     NR_002724         MBL1P
7   chr10   81494024       81767437     NR_029407     LOC642361
8   chr10   81494024       81767437     NR_033857       BMS1P21
9   chr10   81494024       81767437     NR_120611    NUTM2B-AS1
12  chr13   18113494       19461807     NR_047508     LINC00417
13  chr13   18113494       19461807     NR_138091    ANKRD20A9P
14  chr15   30247637       30481011  NM_001282472       GOLGA8J
15  chr15   30247637       30481011  NM_001301025          TJP1
16  chr15   30247637       30481011     NR_026859        ULK4P3
17  chr15   30247637       30481011     NR_033933       GOLGA8T
18  chr16   16428554       16576952  NM_001282511        NPIPA8
19  chr16   16428554       16576952     NR_036447        PKD1P1
20  chr16   16428554       16576952     NR_106971     MIR6511A4
21  chr19      81991         196609  NM_001005240        OR4F17
22  chr20   14633403       15510858  NM_001033087       MACROD2
24  chr20   14633403       15510858     NR_037841   MACROD2-AS1
26   chr3  118716621      118846628  NM_001015887        IGSF11
28   chr3  146638346      146851457     NR_135560  LOC101927866
29   chr8  135687933      135922837  NM_001174158          ZFAT
31   chr8  135687933      135922837     NR_029599        MIR30D
32   chr8  135687933      135922837     NR_029666        MIR30B
33   chr8  135687933      135922837     NR_125427  LOC101927845
34   chr8  135687933      135922837     NR_126028    NCRNA00250,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145020909      145460490  NM_001198832       PDE4DIP
1    chr1  145020909      145460490  NM_001277444         NBPF9
2    chr1  145020909      145460490  NM_001278267        NBPF20
3    chr1  145020909      145460490  NM_001302371        NBPF10
4    chr1  145020909      145460490  NM_001313972         TXNIP
5    chr1  145020909      145460490     NM_004892        SEC22B
8    chr1  145020909      145460490     NM_032305       POLR3GL
9    chr1  145020909      145460490     NM_145277          HFE2
10   chr1  145020909      145460490     NM_203458      NOTCH2NL
11   chr1  145020909      145460490     NR_104217       NBPF25P
12   chr1  145020909      145460490     NR_125967  LOC101928979
13  chr10   88935161       89046671  NM_001099338        NUTM2A
14  chr10   88935161       89046671  NM_001330112        FAM35A
16  chr10   88935161       89046671     NR_024397    NUTM2A-AS1
17  chr18   36534823       37333717     NR_024391      MIR924HG
18  chr18   36534823       37333717     NR_030628        MIR924
19  chr18   36534823       37333717     NR_049847     MIR5583-1
20  chr18   36534823       37333717     NR_049848     MIR5583-2
21   chr7   64099812       64213608  NM_001282360        ZNF107
23   chr7   64099812       64213608     NR_106898       MIR6839,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2  107717272      108032126     NR_049853  MIR548AU
1  chr3   85458720       85752725  NM_001167675     CADM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20281449       20528937     NR_038836       CHEK2P2
1   chr16   21538402       21817041  NM_001077180        METTL9
2   chr16   21538402       21817041  NM_001161683          OTOA
4   chr16   21538402       21817041     NM_005849         IGSF6
7   chr16   21538402       21817041     NR_003370        RRN3P1
8   chr16   21538402       21817041     NR_110930  LOC101927814
9    chr2   78146213       78396540     NR_024342        SNAR-H
10   chr2   78146213       78396540     NR_110287  LOC101927948
11   chr2   78146213       78396540     NR_110288  LOC101927967
12   chr4   12646111       13718370  NM_001017979         RAB28
13   chr4   12646111       13718370     NM_001189        NKX3-2
14   chr4   12646111       13718370     NM_148894        BOD1L1
15   chr4   12646111       13718370     NR_015450     LINC01096
16   chr4   12646111       13718370     NR_034054     LINC01097
17   chr4   12646111       13718370     NR_049814       MIR5091
18   chr4   12646111       13718370     NR_121681     LINC01182
19   chr4   69206280       69405754  NM_001031732        YTHDC1
20   chr4   69206280       69405754     NM_001077       UGT2B17
21   chr4   69206280       69405754     NM_014058     TMPRSS11E
22   chr7   64045983       64154198  NM_001282360        ZNF107
23   chr7   64045983       64154198     NR_077227  LOC100128885
25   chr7   64045983       64154198     NR_106898       MIR6839
26   chr9    2451350        3025012     NM_003383         VLDLR
27   chr9    2451350        3025012     NM_014878          PUM3
28   chr9    2451350        3025012     NM_133497         KCNV2
29   chr9    2451350        3025012     NR_015375     VLDLR-AS1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   67301634       67448947     NM_000695     ALDH3B2
1   chr11   67301634       67448947     NM_000852       GSTP1
3   chr11   67301634       67448947  NM_001166102      NDUFV1
4   chr11   67301634       67448947  NM_001243750       NUDT8
5   chr11   67301634       67448947     NM_005995       TBX10
6   chr11   67301634       67448947     NM_080658        ACY3
8   chr11   67301634       67448947     NR_033791      DOC2GP
9   chr11   67301634       67448947     NR_130935    C11orf72
10   chr2  212959542      213270063  NM_001042599       ERBB4
11   chr8  124949289      125088158  NM_001039112      FER1L6
12   chr8  124949289      125088158     NR_040044  FER1L6-AS1
13   chr8  124949289      125088158     NR_103547  FER1L6-AS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   68594650       69230079  NM_001039690         CHTF8
2   chr16   68594650       69230079  NM_001199280          HAS3
3   chr16   68594650       69230079  NM_001305204         ZFP90
5   chr16   68594650       69230079  NM_001317184          CDH1
6   chr16   68594650       69230079  NM_001317195          CDH3
8   chr16   68594650       69230079     NM_006750         SNTB2
9   chr16   68594650       69230079     NM_024562        TANGO6
10  chr16   68594650       69230079     NM_032830          UTP4
12  chr16   68594650       69230079     NR_106988     MIR7641-2
13   chr2   97192387       97358763  NM_001115016        KANSL3
14   chr2   97192387       97358763  NM_001293083        FER1L5
15   chr2   97192387       97358763  NM_001319085        ARID5A
18   chr2   97192387       97358763     NR_135564  LOC105373496
19   chr6    1886427        2062324  NM_001253846          GMDS,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr16    6542104        6642263  NM_001308117    RBFOX1
2   chr22   19904766       20017121     NM_000754      COMT
5   chr22   19904766       20017121  NM_001282512    TXNRD2
6   chr22   19904766       20017121  NM_001283116    TANGO2
9   chr22   19904766       20017121     NM_001670     ARVCF
12  chr22   19904766       20017121     NR_039918   MIR4761
13   chr8   16431194       17450075  NM_001008539    SLC7A2
14   chr8   16431194       17450075  NM_001145152    VPS37A
16   chr8   16431194       17450075  NM_001322087     CNOT7
20   chr8   16431194       17450075     NM_004686     MTMR7
21   chr8   16431194       17450075     NM_006207    PDGFRL
23   chr8   16431194       17450075     NM_016353    ZDHHC2
24   chr8   16431194       17450075     NM_019851     FGF20
25   chr8   16431194       17450075     NM_181723     MICU3,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr15   79774636       80227347  NM_001100879        ST20
2  chr15   79774636       80227347  NM_001199758       MTHFS
3  chr15   79774636       80227347  NM_001199760  ST20-MTHFS
5  chr15   79774636       80227347     NR_028330    ST20-AS1
8   chr2  110161434      110329329  NM_001099289      SH3RF3
9   chr2  110161434      110329329  NM_001321504      SEPT10,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   76035924       76213634     NM_000016         ACADM
1    chr1   76035924       76213634  NM_001130058       SLC44A5
5    chr1   76035924       76213634     NR_130749        DLSTP1
6   chr17    3374523        3552513     NM_000049          ASPA
8   chr17    3374523        3552513  NM_001170696       SPATA22
13  chr17    3374523        3552513     NM_004937          CTNS
14  chr17    3374523        3552513     NM_013276          SHPK
15  chr17    3374523        3552513     NM_018727         TRPV1
20  chr17    3374523        3552513     NM_145068         TRPV3
21   chr9   67126169       67358981     NR_002817        AQP7P1
22   chr9   67126169       67358981     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   26975114       27112501     NM_002515     NOVA1
2   chr5   31240258       31342839     NM_004932      CDH6
3   chr6   20911067       21017460     NM_017774    CDKAL1
4   chr7  110657663      110844107  NM_001099658     LRRN3
5   chr7  110657663      110844107  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187247239      187354685     NR_126347     LINC01036
1    chr1  245006614      245109800  NM_001312871         COX20
3    chr1  245006614      245109800     NM_004501        HNRNPU
5    chr1  245006614      245109800     NR_132782      SNORA100
6   chr10   27574490       27680713     NR_138082       ARMC4P1
7   chr10   67985523       68209415  NM_001127384        CTNNA3
9   chr18   35109490       35303197     NM_020180         CELF4
10  chr18   35109490       35303197     NR_036202       MIR4318
11  chr22   20079546       20239814  NM_001190326         DGCR8
12  chr22   20079546       20239814  NM_001243537       CCDC188
13  chr22   20079546       20239814  NM_001278639        RANBP1
16  chr22   20079546       20239814     NM_013373        ZDHHC8
17  chr22   20079546       20239814     NM_022727        TRMT2A
18  chr22   20079546       20239814     NM_023004         RTN4R
19  chr22   20079546       20239814     NR_026919     LINC00896
20  chr22   20079546       20239814     NR_031618       MIR1286
21  chr22   20079546       20239814     NR_038460     LOC284865
22  chr22   20079546       20239814     NR_106874       MIR6816
23   chr3  155593669      155723990     NM_003875          GMPS
24   chr3  193078416      193267213     NM_032279       ATP13A4
25   chr3  193078416      193267213     NM_198505       ATP13A5
26   chr5  117437652      117680052     NR_104609       HNCAT21
27   chr5  117437652      117680052     NR_104997  LOC102467224
28   chr7   75916312       76097753  NM_001102594          DTX2
29   chr7   75916312       76097753  NM_001110199         SRRM3
30   chr7   75916312       76097753  NM_001110354           ZP3
31   chr7   75916312       76097753     NM_001540         HSPB1
33   chr7   75916312       76097753     NM_012479         YWHAG
34   chr7   75916312       76097753     NM_080744         SSC4D, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68537106       68658236  NM_001127384        CTNNA3
2   chr10   68537106       68658236     NR_111911  LOC101928961
3   chr16   18353357       18480299  NM_001282511        NPIPA8
4   chr16   18353357       18480299     NR_103772  LOC100288162
5   chr16   18353357       18480299     NR_106971     MIR6511A4
6   chr16   18353357       18480299     NR_107060     MIR6770-2
7   chr17     149257         343496  NM_001013672      C17orf97
8   chr17     149257         343496  NM_001190411        RPH3AL
9   chr17     149257         343496     NM_182705         RFLNB
10  chr17     149257         343496     NR_040011  LOC100506388
11  chr17     149257         343496     NR_136407  LOC105371430,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   68098662       68207745  NM_001127384     CTNNA3
2   chr9   39014072       39433191  NM_001085452  SPATA31A1
3   chr9   39014072       39433191     NM_033655    CNTNAP3
4   chr9   39014072       39433191     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr20   14669987       14816352  NM_080676      MACROD2
1  chr20   14772339       14901397  NM_080676      MACROD2
2  chr20   14772339       14901397  NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr18   24569069       24715434  NM_001256316       CHST9
1    chr5  109779919      110905351  NM_001039763     TMEM232
2    chr5  109779919      110905351  NM_001303250    SLC25A46
3    chr5  109779919      110905351  NM_001308058      STARD4
4    chr5  109779919      110905351  NM_001323374       CAMK4
8    chr5  109779919      110905351     NM_033035        TSLP
12   chr5  109779919      110905351     NM_139281       WDR36
13   chr5  109779919      110905351     NR_031644    MIR548F3
14   chr5  109779919      110905351     NR_040093  STARD4-AS1
16   chr7  110524084      110742559  NM_001099658       LRRN3
17   chr7  110524084      110742559  NM_001244606      IMMP2L
19   chr7  110758514      110903986  NM_001099658       LRRN3
20   chr7  110758514      110903986  NM_001244606      IMMP2L
22   chr7  121415394      122149356  NM_001024613       FEZF1
23   chr7  121415394      122149356  NM_001206838      PTPRZ1
24   chr7  121415394      122149356     NM_005763        AASS
25   chr7  121415394      122149356     NM_017954      CADPS2
26   chr7  121415394      122149356     NR_036484   FEZF1-AS1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  143751285      143928258  NM_001123068   PPIAL4G
1  chr1  143751285      143928258  NM_001287385    FAM72C
2  chr1  143751285      143928258  NM_001345942    FAM72D,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  145087978      145261147  NM_001277444      NBPF9
1    chr1  145087978      145261147  NM_001278267     NBPF20
2    chr1  145087978      145261147     NM_004892     SEC22B
3    chr1  145087978      145261147     NM_203458   NOTCH2NL
4   chr15   36170562       37563871  NM_001130010   C15orf41
7   chr15   36170562       37563871     NM_002399      MEIS2
12  chr15   36170562       37563871     NR_024264  LOC145845
13  chr15   36170562       37563871     NR_027320  CSNK1A1P1
14  chr15   36170562       37563871     NR_039735    MIR4510
15  chr15   36170562       37563871     NR_107030    MIR8063
16  chr21   22592905       22835909     NM_004540      NCAM2
17   chr4   69144564       69254429  NM_001031732     YTHDC1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14650676       15387433  NM_001033087      MACROD2
2  chr20   14650676       15387433     NR_037841  MACROD2-AS1
4   chr5   18995349       20011686  NM_001291956        CDH18
7   chr9   28463580       28576191  NM_001258282       LINGO2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2     861719        1002735     NM_018968         SNTG2
1   chr2     861719        1002735     NR_033880     LINC01115
2   chr2     861719        1002735     NR_110179  LOC101060385
3   chr2     861719        1002735     NR_136151  LOC101060391
4   chr2  181816822      181936767  NM_001278554        UBE2E3
7   chr6   90286440       90551884  NM_001137667      CASP8AP2
8   chr6   90286440       90551884  NM_001242809        ANKRD6
11  chr6   90286440       90551884     NM_014611          MDN1
12  chr6   90286440       90551884     NM_020466         LYRM2
14  chr6   90286440       90551884     NR_111915  LOC101929057,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr15   30281839       30421904  NM_001282472     GOLGA8J
1   chr15   30281839       30421904     NR_026859      ULK4P3
2   chr19   33181161       33287617  NM_001105570      NUDT19
3   chr19   33181161       33287617  NM_001110822      TDRD12
4    chr8    6966791        7460606  NM_001040705    DEFB107B
5    chr8    6966791        7460606  NM_001081551    DEFB103A
6    chr8    6966791        7460606  NM_001164457     ZNF705G
7    chr8    6966791        7460606  NM_001205266      DEFB4B
8    chr8    6966791        7460606  NM_001256873     USP17L1
9    chr8    6966791        7460606  NM_001256874     USP17L4
10   chr8    6966791        7460606  NM_001282478     PRR23D2
11   chr8    6966791        7460606  NM_001282479     PRR23D1
12   chr8    6966791        7460606     NM_058200     SPAG11B
16   chr8    6966791        7460606     NM_080389    DEFB104A
17   chr8    6966791        7460606     NM_152250    DEFB105A
18   chr8    6966791        7460606     NM_152251    DEFB106A
19   chr8    6966791        7460606     NR_003668  DEFB109P1B
20   chr8    6966791        7460606     NR_027000   LINC00965
23   chr8    6966791        7460606     NR_027423      FAM66B
24   chr8    6966791        7460606     NR_046343    FAM90A7P,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   28712031       28925494     NR_033351    GOLGA8F
1   chr15   28712031       28925494     NR_033353    GOLGA8G
2   chr15   28712031       28925494     NR_036443    HERC2P9
3   chr15   28712031       28925494     NR_039734  MIR4509-3
4    chr4   71345464       71487535  NM_001145006       MUC7
6    chr4   71345464       71487535  NM_001286731       AMTN
7    chr4   71345464       71487535     NM_016519       AMBN
9    chr6    5153499        5334416  NM_001164840      LYRM4
11   chr6    5153499        5334416  NM_001318872      FARS2
14   chr6    5153499        5334416     NR_126015  LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   58832271       59533628     NM_000236          LIPC
1   chr15   58832271       59533628  NM_001040450        FAM63B
3   chr15   58832271       59533628     NM_001110        ADAM10
4   chr15   58832271       59533628  NM_001270530        RNF111
6   chr15   58832271       59533628     NM_004701         CCNB2
7   chr15   58832271       59533628     NM_004998         MYO1E
9   chr15   58832271       59533628     NM_033195       LDHAL6B
10  chr15   58832271       59533628     NR_031750       MIR2116
11  chr15   58832271       59533628     NR_073415     HSP90AB4P
12  chr15   58832271       59533628     NR_135043          SLTM
13  chr15   58832271       59533628     NR_135474  LOC101928725
14  chr15   85737760       86031661  NM_001310153      GOLGA6L3
15  chr15   85737760       86031661     NM_006738        AKAP13
16  chr15   85737760       86031661     NR_049748     LOC642423
17  chr15   85737760       86031661     NR_106993       MIR7706
18  chr20   14846856       14977782     NM_080676       MACROD2
19  chr20   14846856       14977782     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2  210241516      211020564  NM_001039538          MAP2
1    chr2  210241516      211020564  NM_001307976       KANSL1L
2    chr2  210241516      211020564  NM_001318931           RPE
4    chr2  210241516      211020564     NM_182587         UNC80
5    chr2  210241516      211020564     NR_110291  LOC101928020
6   chr22   20141160       20247704     NM_023004         RTN4R
7   chr22   20141160       20247704     NR_026919     LINC00896
8   chr22   20141160       20247704     NR_031618       MIR1286
9   chr22   20141160       20247704     NR_038460     LOC284865
10   chr9   24368357       24767933  NM_001271706        IZUMO3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11    4224763        4822170  NM_001004137    OR52M1
1   chr11    4224763        4822170  NM_001004751    OR51D1
2   chr11    4224763        4822170  NM_001004752    OR51F1
3   chr11    4224763        4822170  NM_001005161    OR52B4
4   chr11    4224763        4822170  NM_001005169    OR52I1
5   chr11    4224763        4822170  NM_001005170    OR52I2
6   chr11    4224763        4822170  NM_001005171    OR52K1
7   chr11    4224763        4822170  NM_001005172    OR52K2
8   chr11    4224763        4822170     NM_003141    TRIM21
9   chr11    4224763        4822170     NM_018073    TRIM68
10  chr11    4224763        4822170     NM_030774    OR51E2
11  chr11    4224763        4822170     NM_144663  C11orf40
12  chr11    4224763        4822170     NM_152430    OR51E1
13  chr13   54773590       54941494     NR_031628   MIR1297,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   10636239       10784986  NM_001300739        MAGOHB
2   chr12   10636239       10784986     NM_018423         STYK1
3   chr12   10636239       10784986     NR_028045        KLRA1P
4   chr12   62455039       62862916  NM_001252079         USP15
5   chr12   62455039       62862916  NM_001278469          MON2
7   chr12   62455039       62862916     NM_178539       FAM19A2
8   chr12   62455039       62862916     NR_106740       MIR6125
9   chr17     101298         301114  NM_001013672      C17orf97
10  chr17     101298         301114  NM_001190411        RPH3AL
11  chr17     101298         301114     NM_182705         RFLNB
12  chr17     101298         301114     NR_040011  LOC100506388
13  chr17     101298         301114     NR_136407  LOC105371430
14   chr7    6664458        7255613  NM_001099697      RSPH10B2
15   chr7    6664458        7255613  NM_001278559        ZNF316
16   chr7    6664458        7255613     NM_006956         ZNF12
17   chr7    6664458        7255613     NM_020156       C1GALT1
18   chr7    6664458        7255613     NM_198097         CCZ1B
19   chr7    6664458        7255613     NR_002217        PMS2CL
20   chr7    6664458        7255613     NR_034022  LOC100131257
21   chr7    6664458        7255613     NR_037454       MIR3683
22   chr9    9484611        9893714     NM_002839         PTPRD
23   chr9    9484611        9893714     NR_135135  LOC105375972,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2  107694341      109080803  NM_001008743       SULT1C3
1    chr2  107694341      109080803     NM_001056       SULT1C2
2    chr2  107694341      109080803  NM_001305006        SLC5A7
4    chr2  107694341      109080803     NM_006588       SULT1C4
5    chr2  107694341      109080803     NM_182588         RGPD4
6    chr2  107694341      109080803     NR_024439     RGPD4-AS1
7    chr2  107694341      109080803     NR_028063          GCC2
8    chr2  107694341      109080803     NR_037191     SULT1C2P1
9    chr2  107694341      109080803     NR_049853      MIR548AU
10   chr2  107694341      109080803     NR_126369        GACAT1
12   chr2  107694341      109080803     NR_131251     LINC01594
13   chr2  107694341      109080803     NR_135071     LINC01593
14   chr2  133707695      133821275     NM_207363        NCKAP5
15  chr20   40504206       40771197     NM_133170         PTPRT
16   chr7  132727578      132840315  NM_001317178        CHCHD3
18   chr7  132727578      132840315     NR_133931  LOC105375512,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88959668       89407639  NM_001099338      NUTM2A
1   chr10   88959668       89407639  NM_001178118      MINPP1
3   chr10   88959668       89407639     NR_024397  NUTM2A-AS1
4   chr10   88959668       89407639     NR_029408   LINC00863
5   chr10   88959668       89407639     NR_039825     MIR4678
6   chr10   88959668       89407639     NR_046091   LINC00864
7   chr10   88959668       89407639     NR_075100      NUTM2D
9   chr16   22248132       22536841  NM_001135865      NPIPB5
10  chr16   22248132       22536841  NM_001258033      POLR3E
11  chr16   22248132       22536841     NM_001802        CDR2
12  chr16   22248132       22536841     NM_013302       EEF2K
13  chr16   22248132       22536841     NR_027154      SMG1P1
14  chr16   22248132       22536841     NR_027460      RRN3P3
15  chr16   22248132       22536841     NR_136333     MFSD13B,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr15   77849971       78251169  NM_001301186      LINGO1
10  chr15   77849971       78251169     NR_027024   LOC645752
11  chr15   77849971       78251169     NR_045123  LINGO1-AS1
12  chr15   77849971       78251169     NR_120361  LINGO1-AS2
13   chr7  110685028      110920977  NM_001099658       LRRN3
14   chr7  110685028      110920977  NM_001244606      IMMP2L
16   chr9    2481673        2617618     NR_015375   VLDLR-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   40587418       40735135     NM_133170         PTPRT
1    chr7   16474120       16702653  NM_001159767          BZW2
2    chr7   16474120       16702653  NM_001195280        LRRC72
3    chr7   16474120       16702653     NM_015464       SOSTDC1
4    chr7   16474120       16702653     NM_020319        ANKMY2
5    chr7   64060219       64297136  NM_001160183        ZNF138
6    chr7   64060219       64297136  NM_001282360        ZNF107
8    chr7   64060219       64297136     NR_077227  LOC100128885
10   chr7   64060219       64297136     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr22   19912746       20023852     NM_000754      COMT
3   chr22   19912746       20023852  NM_001282512    TXNRD2
4   chr22   19912746       20023852  NM_001283116    TANGO2
7   chr22   19912746       20023852     NM_001670     ARVCF
10  chr22   19912746       20023852     NR_029706    MIR185
11  chr22   19912746       20023852     NR_039918   MIR4761,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67302248       67435498     NM_000695   ALDH3B2
1   chr11   67302248       67435498     NM_000852     GSTP1
3   chr11   67302248       67435498  NM_001166102    NDUFV1
4   chr11   67302248       67435498  NM_001243750     NUDT8
5   chr11   67302248       67435498     NM_005995     TBX10
6   chr11   67302248       67435498     NM_080658      ACY3
8   chr11   67302248       67435498     NR_033791    DOC2GP
9   chr11   67302248       67435498     NR_130935  C11orf72
10  chr15   41678674       41806565     NM_002220     ITPKA
11  chr15   41678674       41806565     NM_015138      RTF1
12  chr15   41678674       41806565     NM_206961       LTK
13  chr15   41678674       41806565     NR_045620   NDUFAF1
14   chr2  212977304      213179958  NM_001042599     ERBB4,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr3  189598798      189761115  NM_001114979       TP63
2   chr3  189598798      189761115  NM_001134418       P3H2
7   chr7   21374101       21482500  NM_001326542        SP4
9   chr7   29460485       29700016  NM_001293069       CHN2
13  chr7   29460485       29700016  NM_001329997      PRR15
16  chr7   29460485       29700016     NR_024278  LOC646762,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   35670283       35772864     NR_039629  MIR548AD
1  chr7    6799199        6940152  NM_001099697  RSPH10B2
2  chr7    6799199        6940152     NM_198097     CCZ1B,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81492839       81606292     NR_029407   LOC642361
1   chr10   81492839       81606292     NR_120611  NUTM2B-AS1
4   chr14   61763021       61876311     NM_006255       PRKCH
5   chr15   43730249       43843159  NM_001141979     TP53BP1
6   chr15   43730249       43843159  NM_001190214     PPIP5K1
7   chr15   43730249       43843159     NM_002373       MAP1A
10   chr2   56543986       56715596  NM_001080433     CCDC85A], 'case': [    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145310117      145575524  NM_001039888      ANKRD34A
1    chr1  145310117      145575524  NM_001184795        PEX11B
2    chr1  145310117      145575524  NM_001277444         NBPF9
3    chr1  145310117      145575524  NM_001278267        NBPF20
4    chr1  145310117      145575524  NM_001280799       ANKRD35
5    chr1  145310117      145575524  NM_001302371        NBPF10
6    chr1  145310117      145575524  NM_001303040        ITGA10
7    chr1  145310117      145575524  NM_001313972         TXNIP
9    chr1  145310117      145575524     NM_005105         RBM8A
11   chr1  145310117      145575524     NM_032305       POLR3GL
12   chr1  145310117      145575524     NM_145277          HFE2
13   chr1  145310117      145575524     NM_153713         LIX1L
14   chr1  145310117      145575524     NR_002328        GNRHR2
18   chr1  145310117      145575524     NR_104217       NBPF25P
19   chr1  145310117      145575524     NR_125967  LOC101928979
20  chr14   21826668       22059063  NM_001005465        OR10G3
21  chr14   21826668       22059063  NM_001163380         RAB2B
22  chr14   21826668       22059063  NM_001170629          CHD8
23  chr14   21826668       22059063  NM_001303523          TOX4
24  chr14   21826668       22059063     NM_007192       SUPT16H
25  chr14   21826668       22059063     NM_019852        METTL3
28  chr14   21826668       22059063     NR_002916        SNORD8
29  chr14   21826668       22059063     NR_003029        SNORD9
30  chr14   21826668       22059063     NR_111966         SALL2
32  chr20   14706681       15115546     NM_080676       MACROD2
33  chr20   14706681       15115546     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143585018      144510243  NM_001123068       PPIAL4G
1    chr1  143585018      144510243  NM_001135789       PPIAL4C
2    chr1  143585018      144510243  NM_001278267        NBPF20
3    chr1  143585018      144510243  NM_001287385        FAM72C
4    chr1  143585018      144510243  NM_001345942        FAM72D
8    chr1  143585018      144510243     NR_024511     LINC00623
10   chr1  143585018      144510243     NR_104014     LINC01138
11   chr1  143585018      144510243     NR_106967       MIR6077
12   chr1  143585018      144510243     NR_111930  LOC100132057
13   chr1  143585018      144510243     NR_111953     LINC00869
15  chr14   21832131       22350423  NM_001001912         OR4E2
16  chr14   21832131       22350423  NM_001005465        OR10G3
17  chr14   21832131       22350423  NM_001005466        OR10G2
18  chr14   21832131       22350423  NM_001163380         RAB2B
19  chr14   21832131       22350423  NM_001170629          CHD8
20  chr14   21832131       22350423  NM_001303523          TOX4
21  chr14   21832131       22350423  NM_001317107         OR4E1
22  chr14   21832131       22350423     NM_007192       SUPT16H
23  chr14   21832131       22350423     NM_019852        METTL3
26  chr14   21832131       22350423     NR_002916        SNORD8
27  chr14   21832131       22350423     NR_003029        SNORD9
28  chr14   21832131       22350423     NR_111966         SALL2
30   chr7   64113156       64215659  NM_001282360        ZNF107
32   chr7   64113156       64215659     NR_106898       MIR6839
33   chr7   64083939       64423423  NM_001160183        ZNF138
34   chr7   64083939       64423423  NM_001282360        ZNF107
35   chr7   64083939       64423423     NM_021148        ZNF273
38   chr7   64083939       64423423     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  244959991      245090424  NM_001312871        COX20
2    chr1  244959991      245090424     NM_004501       HNRNPU
4    chr1  244959991      245090424     NR_132782     SNORA100
5   chr10  111201688      112379109  NM_001008541         MXI1
6   chr10  111201688      112379109     NM_001121         ADD3
9   chr10  111201688      112379109  NM_001324128      XPNPEP1
11  chr10  111201688      112379109     NM_004419        DUSP5
12  chr10  111201688      112379109     NM_005445         SMC3
13  chr10  111201688      112379109     NM_005871       SMNDC1
16  chr10  111201688      112379109     NR_038943     ADD3-AS1
17  chr14   21753161       21883807  NM_001170629         CHD8
18  chr14   21753161       21883807     NM_007192      SUPT16H
19  chr14   21753161       21883807     NM_020366      RPGRIP1
21  chr14   21753161       21883807     NR_002916       SNORD8
22  chr14   21753161       21883807     NR_003029       SNORD9
23  chr15   82713469       82817541  NM_001164465    GOLGA6L10
24  chr15   82713469       82817541  NM_001291420     GOLGA6L9
27  chr15   82713469       82817541     NR_026811    GOLGA2P10
28  chr15   82713469       82817541     NR_111962   GOLGA6L17P
29  chr16   28436522       28537251     NM_000086         CLN3
31  chr16   28436522       28537251  NM_001199142        EIF3C
35  chr16   28436522       28537251     NM_018690        APOBR
36  chr16   28436522       28537251     NM_145659         IL27
37  chr20   14773524       15510281  NM_001033087      MACROD2
39  chr20   14773524       15510281     NR_037841  MACROD2-AS1
41   chr7   75877776       76080605  NM_001110199        SRRM3
42   chr7   75877776       76080605  NM_001110354          ZP3
43   chr7   75877776       76080605     NM_001540        HSPB1
45   chr7   75877776       76080605     NM_012479        YWHAG
46   chr7   75877776       76080605     NM_080744        SSC4D,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   15464044       16109346  NM_001040113         MYH11
1   chr16   15464044       16109346  NM_001128423        MPV17L
2   chr16   15464044       16109346  NM_001142469      C16orf45
3   chr16   15464044       16109346  NM_001143979          NDE1
4   chr16   15464044       16109346  NM_001184998      KIAA0430
5   chr16   15464044       16109346  NM_001277325        NPIPA5
6   chr16   15464044       16109346     NM_004996         ABCC1
9   chr16   15464044       16109346     NR_030159        MIR484
10  chr16   15464044       16109346     NR_106761       MIR6506
11  chr16   15464044       16109346     NR_130755         FOPNL
12  chr16   18161663       18544331  NM_001004060         NOMO2
13  chr16   18161663       18544331  NM_001282511        NPIPA8
14  chr16   18161663       18544331     NR_036140     MIR3179-1
15  chr16   18161663       18544331     NR_036142     MIR3180-2
16  chr16   18161663       18544331     NR_036144     MIR3180-3
17  chr16   18161663       18544331     NR_037442     MIR3670-1
18  chr16   18161663       18544331     NR_103772  LOC100288162
19  chr16   18161663       18544331     NR_106971     MIR6511A4
20  chr16   18161663       18544331     NR_107060     MIR6770-2
21  chr21   13523012       15642141  NM_001302998          LIPI
22  chr21   13523012       15642141  NM_001320602         RBM11
23  chr21   13523012       15642141     NM_174981         POTED
25  chr21   13523012       15642141     NR_026755      CYP4F29P
26  chr21   13523012       15642141     NR_026916    ANKRD30BP2
27  chr21   13523012       15642141     NR_027270   ANKRD20A11P
28  chr21   13523012       15642141     NR_036061     MIR3118-1
29  chr21   13523012       15642141     NR_036164     MIR3156-3
30  chr21   13523012       15642141     NR_110544  LOC102724188
31  chr21   13523012       15642141     NR_128718     MIR8069-2
32   chr4   69142248       69754321  NM_001031732        YTHDC1
33   chr4   69142248       69754321     NM_001075       UGT2B10
34   chr4   69142248       69754321     NM_001076       UGT2B15
35   chr4   69142248       69754321     NM_001077       UGT2B17
36   chr4   69142248       69754321     NM_014058     TMPRSS11E
37   chr4  169193951      169390218  NM_001012967        DDX60L
39   chr4  169193951      169390218     NM_017631         DDX60
40   chr5   17667095       19223336     NR_134286     LOC646241
42   chr7    8743985        8853293     NM_152745         NXPH1
43   chr8    7880972        7994424     NR_031689      MIR548I3,      chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr15   20927122       21087433  NM_001277303       POTEB2
1    chr15   20927122       21087433     NM_207355       POTEB3
2    chr15   20927122       21087433     NR_027992       NBEAP1
3    chr15   20927122       21087433     NR_036062    MIR3118-2
5    chr16   22200529       22481443  NM_001258033       POLR3E
6    chr16   22200529       22481443     NM_001802         CDR2
7    chr16   22200529       22481443     NM_013302        EEF2K
8    chr16   22200529       22481443     NR_027154       SMG1P1
9    chr16   22200529       22481443     NR_027460       RRN3P3
10   chr16   22200529       22481443     NR_136333      MFSD13B
11   chr19    1098390        1946334     NM_000156         GAMT
12   chr19    1098390        1946334     NM_000455        STK11
13   chr19    1098390        1946334  NM_001001975        ATP5D
14   chr19    1098390        1946334     NM_001018        RPS15
15   chr19    1098390        1946334  NM_001039848         GPX4
16   chr19    1098390        1946334  NM_001080488      ONECUT3
17   chr19    1098390        1946334  NM_001100122        SBNO2
18   chr19    1098390        1946334  NM_001130111      ABHD17A
19   chr19    1098390        1946334  NM_001136139         TCF3
20   chr19    1098390        1946334  NM_001174118        MEX3D
21   chr19    1098390        1946334  NM_001178002       ATP8B3
22   chr19    1098390        1946334  NM_001243079         PLK5
23   chr19    1098390        1946334     NM_001280        CIRBP
24   chr19    1098390        1946334  NM_001281454         MBD3
28   chr19    1098390        1946334     NM_001319      CSNK1G2
29   chr19    1098390        1946334  NM_001329539       SCAMP4
30   chr19    1098390        1946334     NM_001405        EFNA2
33   chr19    1098390        1946334     NM_005883         APC2
34   chr19    1098390        1946334     NM_006830       UQCR11
36   chr19    1098390        1946334     NM_017573        PCSK4
..     ...        ...            ...           ...          ...
62   chr19   23458770       25337686     NM_138330       ZNF675
63   chr19   23458770       25337686     NR_003603     HAVCR1P1
64   chr19   23458770       25337686     NR_003662      RPSAP58
65   chr19   23458770       25337686     NR_126448    LINC01224
66   chr20   14653178       15082063     NM_080676      MACROD2
67   chr20   14653178       15082063     NR_037841  MACROD2-AS1
69   chr22   19892125       20254278     NM_000754         COMT
72   chr22   19892125       20254278  NM_001190326        DGCR8
73   chr22   19892125       20254278  NM_001243537      CCDC188
74   chr22   19892125       20254278  NM_001278639       RANBP1
77   chr22   19892125       20254278  NM_001282512       TXNRD2
78   chr22   19892125       20254278  NM_001283116       TANGO2
81   chr22   19892125       20254278     NM_001670        ARVCF
84   chr22   19892125       20254278     NM_013373       ZDHHC8
85   chr22   19892125       20254278     NM_022727       TRMT2A
86   chr22   19892125       20254278     NM_023004        RTN4R
87   chr22   19892125       20254278     NR_026919    LINC00896
88   chr22   19892125       20254278     NR_029706       MIR185
89   chr22   19892125       20254278     NR_031618      MIR1286
90   chr22   19892125       20254278     NR_031706      MIR1306
91   chr22   19892125       20254278     NR_037412      MIR3618
92   chr22   19892125       20254278     NR_038460    LOC284865
93   chr22   19892125       20254278     NR_039918      MIR4761
94   chr22   19892125       20254278     NR_106874      MIR6816
95    chr7   75897189       76092099  NM_001102594         DTX2
96    chr7   75897189       76092099  NM_001110199        SRRM3
97    chr7   75897189       76092099  NM_001110354          ZP3
98    chr7   75897189       76092099     NM_001540        HSPB1
100   chr7   75897189       76092099     NM_012479        YWHAG
101   chr7   75897189       76092099     NM_080744        SSC4D

[79 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   68116170       68216899  NM_001127384     CTNNA3
2   chr13   63291354       63405266     NR_047029  LINC00448
5   chr14   21825816       21946957  NM_001163380      RAB2B
6   chr14   21825816       21946957  NM_001170629       CHD8
7   chr14   21825816       21946957  NM_001303523       TOX4
8   chr14   21825816       21946957     NM_007192    SUPT16H
11  chr14   21825816       21946957     NR_002916     SNORD8
12  chr14   21825816       21946957     NR_003029     SNORD9
13   chr4   66498670       66674486  NM_001281766      EPHA5
16   chr4   66498670       66674486     NR_034138  EPHA5-AS1
17   chr9   28704534       28956767  NM_001258282     LINGO2
19   chr9   28704534       28956767     NR_030597     MIR876
20   chr9   28704534       28956767     NR_030618     MIR873,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   86064198       86182214     NM_017953     ZNHIT6
1   chr14   21858612       21967847  NM_001163380      RAB2B
2   chr14   21858612       21967847  NM_001170629       CHD8
3   chr14   21858612       21967847  NM_001303523       TOX4
4   chr14   21858612       21967847     NM_019852     METTL3
7   chr14   21858612       21967847     NR_002916     SNORD8
8   chr14   21858612       21967847     NR_003029     SNORD9
9    chr2   35436045       35972037     NR_039629   MIR548AD
10   chr3     631661        1385014  NM_001289081      CNTN6
11   chr3     631661        1385014     NR_110118  LINC01266
12   chr3  197137488      197299085     NM_203314       BDH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143612441      144078377  NM_001123068       PPIAL4G
1    chr1  143612441      144078377  NM_001287385        FAM72C
2    chr1  143612441      144078377  NM_001345942        FAM72D
6    chr1  143612441      144078377     NR_104014     LINC01138
7    chr1  143612441      144078377     NR_106967       MIR6077
8    chr1  143612441      144078377     NR_111930  LOC100132057
10  chr15   30271193       30641417  NM_001282472       GOLGA8J
11  chr15   30271193       30641417     NR_026771  DKFZP434L187
12  chr15   30271193       30641417     NR_026859        ULK4P3
13  chr15   30271193       30641417     NR_033933       GOLGA8T
14  chr21   30141197       30634405  NM_001286619      MAP3K7CL
18  chr21   30141197       30634405  NM_001320724        RWDD2B
19  chr21   30141197       30634405  NM_001320766          LTN1
20  chr21   30141197       30634405     NM_006447         USP16
21  chr21   30141197       30634405     NM_006585          CCT8
22  chr21   30141197       30634405     NM_013240        N6AMT1
26  chr21   30141197       30634405     NR_027072     LINC00189
28   chr3  105301962      106827661  NM_001321786          CBLB
34   chr4   94172892       94295387     NM_001510         GRID2
35   chr6   45029921       45181448  NM_001261823        SUPT3H
36   chr6   45029921       45181448     NR_030313        MIR586
37   chr7  110506210      110609646  NM_001244606        IMMP2L
39   chr7  110613444      110750372  NM_001099658         LRRN3
40   chr7  110613444      110750372  NM_001244606        IMMP2L
42   chr8   23009865       23116622  NM_001317899         CHMP7
43   chr8   23009865       23116622     NM_003840     TNFRSF10D
44   chr8   23009865       23116622     NM_003844     TNFRSF10A
46   chr8   23009865       23116622     NR_033928     LOC389641
47   chr9   28635859       28773542  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245033707      245197208  NM_001143943        EFCAB2
3    chr1  245033707      245197208     NR_111907  LOC101928068
4   chr10   88997672       89516941  NM_001178118        MINPP1
5   chr10   88997672       89516941  NM_001321968         ATAD1
6   chr10   88997672       89516941     NM_004670        PAPSS2
8   chr10   88997672       89516941     NR_024397    NUTM2A-AS1
9   chr10   88997672       89516941     NR_029408     LINC00863
10  chr10   88997672       89516941     NR_039825       MIR4678
11  chr10   88997672       89516941     NR_046091     LINC00864
12  chr10   88997672       89516941     NR_075100        NUTM2D
14  chr13   19666296       19838598     NM_006001        TUBA3C
15  chr13   19666296       19838598     NR_027248     ANKRD26P3
16  chr13   19666296       19838598     NR_126054  LOC101928697
17  chr14   21698980       21956449  NM_001163380         RAB2B
18  chr14   21698980       21956449  NM_001170629          CHD8
19  chr14   21698980       21956449  NM_001303523          TOX4
20  chr14   21698980       21956449     NM_007192       SUPT16H
21  chr14   21698980       21956449     NM_020366       RPGRIP1
23  chr14   21698980       21956449     NM_031314        HNRNPC
25  chr14   21698980       21956449     NR_002916        SNORD8
26  chr14   21698980       21956449     NR_003029        SNORD9
27  chr16   18276448       18450693  NM_001282511        NPIPA8
28  chr16   18276448       18450693     NR_103772  LOC100288162
29  chr16   18276448       18450693     NR_106971     MIR6511A4,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr12   16446756       16618275  NM_001267598          MGST1
5   chr14   21817050       22041968  NM_001005465         OR10G3
6   chr14   21817050       22041968  NM_001163380          RAB2B
7   chr14   21817050       22041968  NM_001170629           CHD8
8   chr14   21817050       22041968  NM_001303523           TOX4
9   chr14   21817050       22041968     NM_007192        SUPT16H
10  chr14   21817050       22041968     NM_019852         METTL3
11  chr14   21817050       22041968     NM_020366        RPGRIP1
14  chr14   21817050       22041968     NR_002916         SNORD8
15  chr14   21817050       22041968     NR_003029         SNORD9
16  chr14   21817050       22041968     NR_111966          SALL2
18  chr19     913493        1382804     NM_000455          STK11
19  chr19     913493        1382804  NM_001001975          ATP5D
20  chr19     913493        1382804  NM_001039848           GPX4
21  chr19     913493        1382804  NM_001100122          SBNO2
22  chr19     913493        1382804  NM_001258328       ARHGAP45
23  chr19     913493        1382804     NM_001280          CIRBP
28  chr19     913493        1382804  NM_001316323         POLR2E
30  chr19     913493        1382804     NM_001405          EFNA2
32  chr19     913493        1382804     NM_005224         ARID3A
35  chr19     913493        1382804     NM_017914       C19orf24
36  chr19     913493        1382804     NM_019112          ABCA7
37  chr19     913493        1382804     NM_024100          WDR18
38  chr19     913493        1382804     NM_032551         KISS1R
39  chr19     913493        1382804     NM_032853           MUM1
40  chr19     913493        1382804     NM_033420        TMEM259
41  chr19     913493        1382804     NM_138690         GRIN3B
42  chr19     913493        1382804     NM_152769          CBARP
43  chr19     913493        1382804     NM_177401           MIDN
44  chr19     913493        1382804     NM_201277           CNN2
47  chr19     913493        1382804     NR_027271      CIRBP-AS1
48  chr19     913493        1382804     NR_125730         RNU6-2
49  chr19    9358596        9504191  NM_001079935         OR7E24
50  chr19    9358596        9504191  NM_001172650  ZNF559-ZNF177
51  chr19    9358596        9504191  NM_001172651         ZNF177
52  chr19    9358596        9504191  NM_001202406         ZNF559
56  chr19    9358596        9504191     NM_198535         ZNF699
57   chr5  142429037      144276927     NM_000176          NR3C1
60   chr5  142429037      144276927  NM_001135608       ARHGAP26
62   chr5  142429037      144276927     NM_020768         KCTD16
63   chr5  142429037      144276927     NM_021182          HMHB1
64   chr5  142429037      144276927     NM_030799          YIPF5
65   chr5  142429037      144276927     NR_046816   ARHGAP26-IT1
66   chr5  142429037      144276927     NR_049829        MIR5197
67   chr7  121461481      121573166  NM_001206838         PTPRZ1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   21825747       21980791  NM_001163380       RAB2B
1   chr14   21825747       21980791  NM_001170629        CHD8
2   chr14   21825747       21980791  NM_001303523        TOX4
3   chr14   21825747       21980791     NM_007192     SUPT16H
4   chr14   21825747       21980791     NM_019852      METTL3
7   chr14   21825747       21980791     NR_002916      SNORD8
8   chr14   21825747       21980791     NR_003029      SNORD9
9   chr20   25310647       25438313  NM_001042472      ABHD12
10  chr20   25310647       25438313  NM_001318226        NINL
12  chr20   25310647       25438313     NM_021067       GINS1
13   chr8     475367        1491704  NM_001256113        TDRP
14   chr8     475367        1491704  NM_001277161      DLGAP2
15   chr8     475367        1491704  NM_001303100      ERICH1
19   chr8     475367        1491704     NR_073397  ERICH1-AS1
20   chr8     475367        1491704     NR_111948   LOC286083
21   chr8     475367        1491704     NR_134292   LOC401442,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  100010823      100297226  NM_001013660      FRRS1
1    chr1  100010823      100297226     NM_017734      PALMD
2    chr1  100010823      100297226     NR_037516  MIR548AA1
3   chr10   55797308       55909919  NM_001142770     PCDH15
6   chr14   21895952       22004218  NM_001163380      RAB2B
7   chr14   21895952       22004218  NM_001170629       CHD8
8   chr14   21895952       22004218  NM_001303523       TOX4
9   chr14   21895952       22004218     NM_019852     METTL3
12  chr14   21895952       22004218     NR_111966      SALL2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1   87449259       87685624  NM_001134492        HS2ST1
1  chr1   87449259       87685624  NM_001290053  LOC101927844
3  chr1   87449259       87685624     NR_026985     LINC01140,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143646306      143800919  NM_001123068       PPIAL4G
1    chr1  143646306      143800919     NR_104014     LINC01138
2    chr1  143646306      143800919     NR_106967       MIR6077
3    chr1  143646306      143800919     NR_111930  LOC100132057
4   chr15   28718868       29212683  NM_001282468       GOLGA8M
5   chr15   28718868       29212683     NR_026589       WHAMMP2
6   chr15   28718868       29212683     NR_033351       GOLGA8F
7   chr15   28718868       29212683     NR_033353       GOLGA8G
8   chr15   28718868       29212683     NR_036443       HERC2P9
9   chr15   28718868       29212683     NR_036475  LOC100289656
10  chr15   28718868       29212683     NR_037599     PDCD6IPP2
11  chr15   28718868       29212683     NR_039734     MIR4509-3
12  chr15   28718868       29212683     NR_047567     GOLGA6L7P
13   chr6  101426314      101852194     NM_021956         GRIK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   59086492       59206951  NM_001085487         MYSM1
1   chr14   21680920       21915980  NM_001170629          CHD8
2   chr14   21680920       21915980     NM_007192       SUPT16H
3   chr14   21680920       21915980     NM_020366       RPGRIP1
5   chr14   21680920       21915980     NM_031314        HNRNPC
6   chr14   21680920       21915980     NR_002916        SNORD8
7   chr14   21680920       21915980     NR_003029        SNORD9
8    chr2  133111498      133433389  NM_001077427         LYPD1
10   chr2  133111498      133433389     NM_001508         GPR39
11   chr2  133111498      133433389     NM_207363        NCKAP5
12   chr2  133111498      133433389     NR_135203       FAM201B
13   chr7   64050547       64628448  NM_001007253        ERV3-1
14   chr7   64050547       64628448  NM_001160183        ZNF138
15   chr7   64050547       64628448  NM_001282360        ZNF107
16   chr7   64050547       64628448     NM_015852        ZNF117
17   chr7   64050547       64628448     NM_021148        ZNF273
18   chr7   64050547       64628448     NR_033416        CCT6P3
20   chr7   64050547       64628448     NR_077227  LOC100128885
22   chr7   64050547       64628448     NR_106898       MIR6839
23   chr8  124919433      125025137  NM_001039112        FER1L6
24   chr8  124919433      125025137     NR_040044    FER1L6-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152981025      153312293     NM_000427           LOR
1    chr1  152981025      153312293  NM_001010857         LELP1
2    chr1  152981025      153312293  NM_001014291        SPRR2G
3    chr1  152981025      153312293  NM_001014450        SPRR2F
4    chr1  152981025      153312293  NM_001017418        SPRR2B
5    chr1  152981025      153312293  NM_001024209        SPRR2E
6    chr1  152981025      153312293  NM_001195571          PRR9
7    chr1  152981025      153312293     NM_003125        SPRR1B
8    chr1  152981025      153312293     NM_005988        SPRR2A
9    chr1  152981025      153312293     NM_006945        SPRR2D
10   chr1  152981025      153312293     NM_020393       PGLYRP4
11   chr1  152981025      153312293     NM_052891       PGLYRP3
12   chr1  152981025      153312293     NR_003062        SPRR2C
13   chr1  152981025      153312293     NR_110685  LOC101928009
14  chr10   81511801       81716754     NM_003019         SFTPD
15  chr10   81511801       81716754     NR_002724         MBL1P
16  chr10   81511801       81716754     NR_029407     LOC642361
17  chr10   81511801       81716754     NR_033857       BMS1P21
18  chr10   81511801       81716754     NR_120611    NUTM2B-AS1
21  chr14   21763192       21998074  NM_001163380         RAB2B
22  chr14   21763192       21998074  NM_001170629          CHD8
23  chr14   21763192       21998074  NM_001303523          TOX4
24  chr14   21763192       21998074     NM_007192       SUPT16H
25  chr14   21763192       21998074     NM_019852        METTL3
26  chr14   21763192       21998074     NM_020366       RPGRIP1
29  chr14   21763192       21998074     NR_002916        SNORD8
30  chr14   21763192       21998074     NR_003029        SNORD9
31  chr14   21763192       21998074     NR_111966         SALL2
33  chr14   47808707       47922603  NM_001113498         MDGA2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12  130231736      130448473     NM_133448  TMEM132D
1  chr14   21721237       21871923  NM_001170629      CHD8
2  chr14   21721237       21871923     NM_007192   SUPT16H
3  chr14   21721237       21871923     NM_020366   RPGRIP1
5  chr14   21721237       21871923     NM_031314    HNRNPC
6  chr14   21721237       21871923     NR_002916    SNORD8
7  chr14   21721237       21871923     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83570389       83805356  NM_001142699          DLG2
4   chr12   72528150       73648807     NM_013381         TRHDE
5   chr12   72528150       73648807     NR_026836     TRHDE-AS1
7   chr12   72528150       73648807     NR_110130  LOC101928137
8   chr14   21814711       21980848  NM_001163380         RAB2B
9   chr14   21814711       21980848  NM_001170629          CHD8
10  chr14   21814711       21980848  NM_001303523          TOX4
11  chr14   21814711       21980848     NM_007192       SUPT16H
12  chr14   21814711       21980848     NM_019852        METTL3
13  chr14   21814711       21980848     NM_020366       RPGRIP1
16  chr14   21814711       21980848     NR_002916        SNORD8
17  chr14   21814711       21980848     NR_003029        SNORD9
18  chr16   68593698       68768159  NM_001305204         ZFP90
20  chr16   68593698       68768159  NM_001317195          CDH3
21  chr16   76285086       76517481  NM_001322181       CNTNAP4
23   chr4   94191011       94325038     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21897884       22024082  NM_001163380         RAB2B
1   chr14   21897884       22024082  NM_001170629          CHD8
2   chr14   21897884       22024082  NM_001303523          TOX4
3   chr14   21897884       22024082     NM_019852        METTL3
6   chr14   21897884       22024082     NR_111966         SALL2
8   chr17   48324344       48451411  NM_001166131          EME1
9   chr17   48324344       48451411  NM_001168215        TMEM92
10  chr17   48324344       48451411     NM_016504        MRPL27
11  chr17   48324344       48451411     NM_022167         XYLT2
13  chr17   48324344       48451411     NR_125805    TMEM92-AS1
14   chr2   63152774       63387165  NM_001042692         WDPCP
15   chr2   63152774       63387165  NM_001142614         EHBP1
17   chr2   63152774       63387165  NM_001199770          OTX1
20   chr2   63152774       63387165     NR_027069  LOC100132215
22   chr2   63152774       63387165     NR_036635       DBIL5P2
24   chr9   80065526       81596132  NM_001330691         CEP78
26   chr9   80065526       81596132     NM_002072          GNAQ
27   chr9   80065526       81596132     NM_004297         GNA14
28   chr9   80065526       81596132     NM_021154         PSAT1
30   chr9   80065526       81596132     NR_121184     GNA14-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81425939       81630137  NM_001278495        NUTM2B
1   chr10   81425939       81630137     NR_027512       BEND3P3
2   chr10   81425939       81630137     NR_029407     LOC642361
3   chr10   81425939       81630137     NR_120611    NUTM2B-AS1
6   chr11    4208512        4382577     NR_047550  LOC100506082
7   chr13   86030937       86340572     NR_046989     LINC00351
8   chr14   21933850       22195953  NM_001001912         OR4E2
9   chr14   21933850       22195953  NM_001005465        OR10G3
10  chr14   21933850       22195953  NM_001005466        OR10G2
11  chr14   21933850       22195953  NM_001163380         RAB2B
12  chr14   21933850       22195953  NM_001303523          TOX4
13  chr14   21933850       22195953  NM_001317107         OR4E1
14  chr14   21933850       22195953     NM_019852        METTL3
16  chr14   21933850       22195953     NR_111966         SALL2
18  chr16   18536058       18689263  NM_001004060         NOMO2
19  chr16   18536058       18689263     NR_003569       ABCC6P1
20   chr2   51217440       51318707  NM_001330079         NRXN1
23   chr2   51217440       51318707     NR_135237     LOC730100,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   28794155       29063370  NM_001282468       GOLGA8M
1  chr15   28794155       29063370     NR_026589       WHAMMP2
2  chr15   28794155       29063370     NR_036443       HERC2P9
3  chr15   28794155       29063370     NR_036475  LOC100289656
4  chr15   28794155       29063370     NR_037599     PDCD6IPP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   80980868       81218972  NM_001145026         PTPRQ
1   chr12   80980868       81218972  NM_001324423         LIN7A
2   chr12   80980868       81218972     NM_002469          MYF6
3   chr12   80980868       81218972     NM_005593          MYF5
4   chr12   80980868       81218972     NR_120468     LINC01490
5   chr12   85446711       86324166  NM_001079910        LRRIQ1
6   chr12   85446711       86324166     NM_005447        RASSF9
7   chr12   85446711       86324166     NM_006183           NTS
8   chr12   85446711       86324166     NM_006982          ALX1
9   chr14   21767368       22210231  NM_001001912         OR4E2
10  chr14   21767368       22210231  NM_001005465        OR10G3
11  chr14   21767368       22210231  NM_001005466        OR10G2
12  chr14   21767368       22210231  NM_001163380         RAB2B
13  chr14   21767368       22210231  NM_001170629          CHD8
14  chr14   21767368       22210231  NM_001303523          TOX4
15  chr14   21767368       22210231  NM_001317107         OR4E1
16  chr14   21767368       22210231     NM_007192       SUPT16H
17  chr14   21767368       22210231     NM_019852        METTL3
18  chr14   21767368       22210231     NM_020366       RPGRIP1
21  chr14   21767368       22210231     NR_002916        SNORD8
22  chr14   21767368       22210231     NR_003029        SNORD9
23  chr14   21767368       22210231     NR_111966         SALL2
25   chr6  136859412      136982754     NM_003980          MAP7
26   chr6  136859412      136982754     NM_005923        MAP3K5
27   chr6  136859412      136982754     NR_125858  LOC101928461,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   68398483       68534818  NM_001127384    CTNNA3
2  chr14   21910677       22099339  NM_001005465    OR10G3
3  chr14   21910677       22099339  NM_001163380     RAB2B
4  chr14   21910677       22099339  NM_001303523      TOX4
5  chr14   21910677       22099339     NM_019852    METTL3
7  chr14   21910677       22099339     NR_111966     SALL2
9  chr16    6711135        6822094  NM_001308117    RBFOX1,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr20   14759842       15065969     NM_080676            MACROD2
1   chr20   14759842       15065969     NR_037841        MACROD2-AS1
3   chr21   28187037       28459476     NM_006988            ADAMTS1
4   chr21   28187037       28459476     NM_007038            ADAMTS5
5   chr21   28187037       28459476     NR_039916            MIR4759
6   chr22   17128384       17503614  NM_001037814               GAB4
7   chr22   17128384       17503614     NM_175878               XKR3
8   chr22   17128384       17503614     NR_001591             TPTEP1
9   chr22   17128384       17503614     NR_003607            HSFY1P1
10  chr22   17128384       17503614     NR_040115  ANKRD62P1-PARP4P3
11  chr22   17128384       17503614     NR_134584       LOC101929350
12   chr9   14967810       15072313     NR_003920          LOC389705,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16351005       17021631  NM_001004067         NOMO3
1   chr16   16351005       17021631  NM_001282511        NPIPA8
2   chr16   16351005       17021631     NR_036140     MIR3179-1
3   chr16   16351005       17021631     NR_036141     MIR3180-1
4   chr16   16351005       17021631     NR_036142     MIR3180-2
5   chr16   16351005       17021631     NR_036447        PKD1P1
6   chr16   16351005       17021631     NR_103772  LOC100288162
7   chr16   16351005       17021631     NR_106766     MIR6511A1
8   chr16   16351005       17021631     NR_106971     MIR6511A4
9   chr16   16351005       17021631     NR_107060     MIR6770-2
10  chr16   16351005       17021631     NR_128713     MIR3670-4
11   chr2  110082343      110222728  NM_001099289        SH3RF3
12   chr4   72943428       73174207     NM_004885        NPFFR2
13   chr4   72943428       73174207     NM_014243       ADAMTS3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143592153      144567519  NM_001123068       PPIAL4G
1   chr1  143592153      144567519  NM_001135789       PPIAL4C
2   chr1  143592153      144567519  NM_001278267        NBPF20
3   chr1  143592153      144567519  NM_001287385        FAM72C
4   chr1  143592153      144567519  NM_001345942        FAM72D
8   chr1  143592153      144567519     NR_024511     LINC00623
10  chr1  143592153      144567519     NR_104014     LINC01138
11  chr1  143592153      144567519     NR_106967       MIR6077
12  chr1  143592153      144567519     NR_111930  LOC100132057
13  chr1  143592153      144567519     NR_111953     LINC00869
15  chr1  145269934      146893890  NM_001012758        NUDT17
16  chr1  145269934      146893890  NM_001039888      ANKRD34A
17  chr1  145269934      146893890  NM_001097612        GPR89A
18  chr1  145269934      146893890  NM_001101663        NBPF11
19  chr1  145269934      146893890  NM_001144829          FMO5
20  chr1  145269934      146893890  NM_001184795        PEX11B
21  chr1  145269934      146893890  NM_001201325         PDZK1
22  chr1  145269934      146893890  NM_001256336         CHD1L
23  chr1  145269934      146893890  NM_001277444         NBPF9
24  chr1  145269934      146893890  NM_001278141        NBPF12
25  chr1  145269934      146893890  NM_001278267        NBPF20
26  chr1  145269934      146893890  NM_001280799       ANKRD35
27  chr1  145269934      146893890  NM_001302371        NBPF10
28  chr1  145269934      146893890  NM_001303040        ITGA10
29  chr1  145269934      146893890  NM_001303456        POLR3C
30  chr1  145269934      146893890  NM_001313972         TXNIP
33  chr1  145269934      146893890     NM_005105         RBM8A
34  chr1  145269934      146893890     NM_005399        PRKAB2
35  chr1  145269934      146893890     NM_006099         PIAS3
38  chr1  145269934      146893890     NM_007053         CD160
39  chr1  145269934      146893890     NM_014455        RNF115
40  chr1  145269934      146893890     NM_032305       POLR3GL
41  chr1  145269934      146893890     NM_145277          HFE2
42  chr1  145269934      146893890     NM_153713         LIX1L
43  chr1  145269934      146893890     NM_203458      NOTCH2NL
44  chr1  145269934      146893890     NR_002305       PDIA3P1
45  chr1  145269934      146893890     NR_002328        GNRHR2
46  chr1  145269934      146893890     NR_024442     LOC728989
47  chr1  145269934      146893890     NR_038423     LINC00624
49  chr1  145269934      146893890     NR_103466       NBPF13P
52  chr1  145269934      146893890     NR_104217       NBPF25P
54  chr1  145269934      146893890     NR_106794       MIR6736
56  chr1  145269934      146893890     NR_111936       PDZK1P1
57  chr1  145269934      146893890     NR_121645       RNVU1-8
58  chr1  145269934      146893890     NR_125967  LOC101928979
59  chr1  145269934      146893890     NR_135559  LOC100505824
60  chr2   51075120       51228325  NM_001330079         NRXN1
63  chr4  169235280      169483030  NM_001012967        DDX60L
64  chr4  169235280      169483030  NM_001166108         PALLD
66  chr4  169235280      169483030     NM_017631         DDX60
67  chr4  169195491      169469213  NM_001012967        DDX60L
68  chr4  169195491      169469213  NM_001166108         PALLD
70  chr4  169195491      169469213     NM_017631         DDX60
71  chr6    4263829        4512824     NR_106988     MIR7641-2
72  chr7  110502165      110623295  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr13   63117684       63303608     NR_047029    LINC00448
1   chr14   21791432       21892890  NM_001170629         CHD8
2   chr14   21791432       21892890     NM_007192      SUPT16H
3   chr14   21791432       21892890     NM_020366      RPGRIP1
5   chr14   21791432       21892890     NR_002916       SNORD8
6   chr14   21791432       21892890     NR_003029       SNORD9
7    chr2   52219982       52325352     NR_135237    LOC730100
8   chr20   14837119       15014700     NM_080676      MACROD2
9   chr20   14837119       15014700     NR_037841  MACROD2-AS1
11   chr3  145801041      146457654     NM_000935        PLOD2
12   chr3  145801041      146457654  NM_001085420       PLSCR5
13   chr3  145801041      146457654  NM_001128304       PLSCR4
15   chr3  145801041      146457654  NM_001199978       PLSCR2
18   chr3  145801041      146457654     NM_021105       PLSCR1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   27632214       27771861  NM_001034842       PTCHD3
1   chr10   68052979       68153920  NM_001127384       CTNNA3
3   chr16   29549971       29693004  NM_001030288          SPN
4   chr16   29549971       29693004  NM_001318249         QPRT
6   chr16   29549971       29693004     NR_049833    MIR3680-2
7   chr16   29549971       29693004     NR_135305       SMG1P2
9    chr2   51202460       51404975  NM_001330079        NRXN1
12   chr2   51202460       51404975     NR_135237    LOC730100
13  chr20   14689227       15199925  NM_001033087      MACROD2
15  chr20   14689227       15199925     NR_037841  MACROD2-AS1
17  chr20   14803911       14915246     NM_080676      MACROD2
18  chr20   14803911       14915246     NR_037841  MACROD2-AS1
20   chr5      71941         172215     NM_052909     PLEKHG4B
21   chr6  140452397      140922074     NR_037441      MIR3668
22   chr9    9469401        9609048     NM_002839        PTPRD
23   chr9   39038586       39406976  NM_001085452    SPATA31A1
24   chr9   39038586       39406976     NM_033655      CNTNAP3
25   chr9   39038586       39406976     NR_026803      FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   86012016       86121099     NR_046989     LINC00351
1   chr14   21898615       22019745  NM_001163380         RAB2B
2   chr14   21898615       22019745  NM_001170629          CHD8
3   chr14   21898615       22019745  NM_001303523          TOX4
4   chr14   21898615       22019745     NM_019852        METTL3
7   chr14   21898615       22019745     NR_111966         SALL2
9   chr20   25326646       25430120  NM_001042472        ABHD12
11  chr20   25326646       25430120     NM_021067         GINS1
12   chr6   12886782       12987080  NM_001322308       PHACTR1
17   chr9  119649143      120668024     NM_014010         ASTN2
18   chr9  119649143      120668024     NM_138557          TLR4
19   chr9  119649143      120668024     NR_003708      SNORA70C
20   chr9  119649143      120668024     NR_109806  LOC101928797,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28178364       28293762     NM_000275          OCA2
2   chr16   15456597       16946675  NM_001004067         NOMO3
3   chr16   15456597       16946675  NM_001040113         MYH11
4   chr16   15456597       16946675  NM_001079528         ABCC6
5   chr16   15456597       16946675  NM_001128423        MPV17L
6   chr16   15456597       16946675  NM_001142469      C16orf45
7   chr16   15456597       16946675  NM_001143979          NDE1
9   chr16   15456597       16946675  NM_001184998      KIAA0430
10  chr16   15456597       16946675  NM_001277325        NPIPA5
11  chr16   15456597       16946675  NM_001282511        NPIPA8
12  chr16   15456597       16946675     NM_004996         ABCC1
15  chr16   15456597       16946675     NR_030159        MIR484
16  chr16   15456597       16946675     NR_036140     MIR3179-1
17  chr16   15456597       16946675     NR_036141     MIR3180-1
18  chr16   15456597       16946675     NR_036142     MIR3180-2
19  chr16   15456597       16946675     NR_036447        PKD1P1
20  chr16   15456597       16946675     NR_103772  LOC100288162
21  chr16   15456597       16946675     NR_106761       MIR6506
22  chr16   15456597       16946675     NR_106766     MIR6511A1
23  chr16   15456597       16946675     NR_106971     MIR6511A4
24  chr16   15456597       16946675     NR_107060     MIR6770-2
25  chr16   15456597       16946675     NR_128713     MIR3670-4
26  chr16   15456597       16946675     NR_130755         FOPNL,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0     chr1   14933419       15055099     NM_015209          KAZN
2    chr19   33149705       34491485     NM_000285          PEPD
3    chr19   33149705       34491485  NM_001105570        NUDT19
4    chr19   33149705       34491485  NM_001110822        TDRD12
5    chr19   33149705       34491485  NM_001127895         CHST8
7    chr19   33149705       34491485  NM_001129994        KCTD15
8    chr19   33149705       34491485  NM_001252296         CEBPG
9    chr19   33149705       34491485  NM_001285829         CEBPA
10   chr19   33149705       34491485  NM_001300978        FAAP24
12   chr19   33149705       34491485     NM_002333          LRP3
13   chr19   33149705       34491485     NM_014270        SLC7A9
14   chr19   33149705       34491485     NM_019849       SLC7A10
16   chr19   33149705       34491485     NM_032139       ANKRD27
17   chr19   33149705       34491485     NM_032816         CEP89
18   chr19   33149705       34491485     NM_033103         RHPN2
19   chr19   33149705       34491485     NM_173479         WDR88
20   chr19   33149705       34491485     NM_207391        RGS9BP
21   chr19   33149705       34491485     NR_026887     CEBPA-AS1
22   chr19   33149705       34491485     NR_135270       GPATCH1
23   chr22   19030159       26761320     NM_000185      SERPIND1
24   chr22   19030159       26761320     NM_000407         GP1BB
25   chr22   19030159       26761320     NM_000496        CRYBB2
26   chr22   19030159       26761320     NM_000754          COMT
27   chr22   19030159       26761320     NM_000854         GSTT2
28   chr22   19030159       26761320  NM_001001663       TMEM211
29   chr22   19030159       26761320  NM_001007468       SMARCB1
30   chr22   19030159       26761320  NM_001009939         SEPT5
31   chr22   19030159       26761320  NM_001017964          YDJC
32   chr22   19030159       26761320  NM_001018060         AIFM3
33   chr22   19030159       26761320  NM_001024938       SLC2A11
..     ...        ...            ...           ...           ...
215  chr22   19030159       26761320     NR_103767     LINC01311
217  chr22   19030159       26761320     NR_106874       MIR6816
218  chr22   19030159       26761320     NR_106875       MIR6817
219  chr22   19030159       26761320     NR_108107       FAM230B
220  chr22   19030159       26761320     NR_110537  LOC101928891
221  chr22   19030159       26761320     NR_110538  LOC101929374
222  chr22   19030159       26761320     NR_110539     LOC388882
224  chr22   19030159       26761320     NR_132348     GSTT1-AS1
225  chr22   19030159       26761320     NR_135291       PRAMENP
226  chr22   19030159       26761320     NR_136559  LOC100996335
227  chr22   19030159       26761320     NR_136560       FAM230A
228  chr22   19030159       26761320     NR_136569     LOC729461
229  chr22   19030159       26761320     NR_136572  LOC101927859
230  chr22   19030159       26761320     NR_136575  LOC102724728
232   chr8    6731175        7194344  NM_001256873       USP17L1
233   chr8    6731175        7194344  NM_001302265        DEFA1B
234   chr8    6731175        7194344     NM_001925         DEFA4
235   chr8    6731175        7194344     NM_001926         DEFA6
236   chr8    6731175        7194344     NM_004084         DEFA1
238   chr8    6731175        7194344     NM_005217         DEFA3
239   chr8    6731175        7194344     NM_005218         DEFB1
240   chr8    6731175        7194344     NM_021010         DEFA5
241   chr8    6731175        7194344     NR_003668    DEFB109P1B
242   chr8    6731175        7194344     NR_027000     LINC00965
245   chr8    6731175        7194344     NR_027423        FAM66B
246   chr8    6731175        7194344     NR_029386       DEFA10P
247   chr8    6731175        7194344     NR_036686        DEFT1P
249   chr8    6731175        7194344     NR_073407        DEFA8P
250   chr8    6731175        7194344     NR_073408        DEFA9P
251   chr8    6731175        7194344     NR_073421       DEFA11P

[197 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   53052445       53162869  NM_001098512         PRKG1
2   chr10   53052445       53162869     NR_030336        MIR605
3   chr15   28626854       29340159  NM_001130414         APBA2
4   chr15   28626854       29340159  NM_001282468       GOLGA8M
5   chr15   28626854       29340159     NR_026589       WHAMMP2
6   chr15   28626854       29340159     NR_033351       GOLGA8F
8   chr15   28626854       29340159     NR_033353       GOLGA8G
10  chr15   28626854       29340159     NR_036443       HERC2P9
11  chr15   28626854       29340159     NR_036475  LOC100289656
12  chr15   28626854       29340159     NR_037599     PDCD6IPP2
13  chr15   28626854       29340159     NR_039734     MIR4509-3
15  chr15   28626854       29340159     NR_047567     GOLGA6L7P
16   chr7  110638650      110739406  NM_001099658         LRRN3
17   chr7  110638650      110739406  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18277684       18480199  NM_001282511        NPIPA8
1  chr16   18277684       18480199     NR_103772  LOC100288162
2  chr16   18277684       18480199     NR_106971     MIR6511A4
3  chr16   18277684       18480199     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21864087       21964550  NM_001163380         RAB2B
1   chr14   21864087       21964550  NM_001170629          CHD8
2   chr14   21864087       21964550  NM_001303523          TOX4
5   chr14   21864087       21964550     NR_002916        SNORD8
6    chr5  175429994      175543264  NM_001265615       FAM153B
7    chr5  175429994      175543264     NR_103794  LOC100996385
8    chr6   12846830       13026814  NM_001322308       PHACTR1
14   chr6  131088203      131214790  NM_001135554       EPB41L2
15   chr6  131088203      131214790  NM_001195597         SMLR1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   54755361       56049892     NR_031628       MIR1297
1   chr13   54755361       56049892     NR_049804       MIR5007
2   chr13   63142755       63246422     NR_047029     LINC00448
3   chr14   21788340       22048632  NM_001005465        OR10G3
4   chr14   21788340       22048632  NM_001163380         RAB2B
5   chr14   21788340       22048632  NM_001170629          CHD8
6   chr14   21788340       22048632  NM_001303523          TOX4
7   chr14   21788340       22048632     NM_007192       SUPT16H
8   chr14   21788340       22048632     NM_019852        METTL3
9   chr14   21788340       22048632     NM_020366       RPGRIP1
12  chr14   21788340       22048632     NR_002916        SNORD8
13  chr14   21788340       22048632     NR_003029        SNORD9
14  chr14   21788340       22048632     NR_111966         SALL2
16   chr2   51224254       51718069  NM_001330079         NRXN1
19   chr2   51224254       51718069     NR_135237     LOC730100
20   chr2   97406679       97608044  NM_001122646       FAM178B
22   chr2   97406679       97608044     NM_016466       ANKRD39
24   chr2   97406679       97608044     NM_017623         CNNM3
25   chr2   97406679       97608044     NM_017789        SEMA4C
26   chr2   97406679       97608044     NM_020184         CNNM4
27   chr2   97406679       97608044     NM_144994       ANKRD23
28   chr2   97406679       97608044     NR_036074       MIR3127
29   chr2   97406679       97608044     NR_110209  LOC101927053
30   chr7  143697478      143818423  NM_001004135        OR2A12
31   chr7  143697478      143818423  NM_001004488        OR2A25
32   chr7  143697478      143818423  NM_001005281         OR6B1
33   chr7  143697478      143818423  NM_001005480         OR2A2
34   chr7  143697478      143818423     NM_012365         OR2A5
35   chr9    6605611        7947391     NM_000170          GLDC
36   chr9    6605611        7947391  NM_001146695         KDM4C
40   chr9    6605611        7947391  NM_001318058       TMEM261,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21736454       21979482  NM_001163380     RAB2B
1   chr14   21736454       21979482  NM_001170629      CHD8
2   chr14   21736454       21979482  NM_001303523      TOX4
3   chr14   21736454       21979482     NM_007192   SUPT16H
4   chr14   21736454       21979482     NM_019852    METTL3
5   chr14   21736454       21979482     NM_020366   RPGRIP1
7   chr14   21736454       21979482     NM_031314    HNRNPC
9   chr14   21736454       21979482     NR_002916    SNORD8
10  chr14   21736454       21979482     NR_003029    SNORD9
11  chr15   52913361       53042036  NM_001286495   FAM214A
13  chr15   65456723       65569024     NM_003613      CILP
14  chr15   65456723       65569024     NM_006660      CLPX
15  chr15   65456723       65569024     NM_017851    PARP16,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   21764592       21872485  NM_001170629       CHD8
1  chr14   21764592       21872485     NM_007192    SUPT16H
2  chr14   21764592       21872485     NM_020366    RPGRIP1
4  chr14   21764592       21872485     NR_002916     SNORD8
5  chr14   21764592       21872485     NR_003029     SNORD9
6   chr4   69264256       69372153     NM_014058  TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89106279       89273665  NM_001143837          NOX4
6   chr15   20943907       21053570  NM_001277303        POTEB2
7   chr15   20943907       21053570     NM_207355        POTEB3
8   chr15   20943907       21053570     NR_027992        NBEAP1
9   chr15   20943907       21053570     NR_036062     MIR3118-2
10  chr16   18116040       18847697  NM_001004060         NOMO2
11  chr16   18116040       18847697     NM_001019        RPS15A
12  chr16   18116040       18847697  NM_001282511        NPIPA8
13  chr16   18116040       18847697  NM_001313858       ARL6IP1
14  chr16   18116040       18847697     NM_015092          SMG1
16  chr16   18116040       18847697     NR_003569       ABCC6P1
17  chr16   18116040       18847697     NR_036140     MIR3179-1
18  chr16   18116040       18847697     NR_036142     MIR3180-2
19  chr16   18116040       18847697     NR_036144     MIR3180-3
20  chr16   18116040       18847697     NR_037442     MIR3670-1
21  chr16   18116040       18847697     NR_103772  LOC100288162
22  chr16   18116040       18847697     NR_106971     MIR6511A4
23  chr16   18116040       18847697     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17     185205         519193  NM_001013672      C17orf97
1   chr17     185205         519193  NM_001128159         VPS53
2   chr17     185205         519193  NM_001190411        RPH3AL
4   chr17     185205         519193     NM_182705         RFLNB
5   chr17     185205         519193     NR_136407  LOC105371430
6   chr17   78192368       78373829     NM_000199          SGSH
7   chr17   78192368       78373829  NM_001166349      SLC26A11
8   chr17   78192368       78373829  NM_001256071        RNF213
10  chr17   78192368       78373829     NR_029376  LOC100294362
11   chr7  132775663      132993395  NM_001037126         EXOC4
13   chr7  132775663      132993395     NR_106749       MIR6133
14   chr7  132775663      132993395     NR_133931  LOC105375512
15   chr8  124939454      125040536  NM_001039112        FER1L6
16   chr8  124939454      125040536     NR_040044    FER1L6-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143692490      144334532  NM_001123068       PPIAL4G
1   chr1  143692490      144334532  NM_001278267        NBPF20
2   chr1  143692490      144334532  NM_001287385        FAM72C
3   chr1  143692490      144334532  NM_001345942        FAM72D
7   chr1  143692490      144334532     NR_024511     LINC00623
9   chr1  143692490      144334532     NR_104014     LINC01138
10  chr1  143692490      144334532     NR_111930  LOC100132057
11  chr1  143692490      144334532     NR_111953     LINC00869,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18162429       18728302  NM_001004060         NOMO2
1   chr16   18162429       18728302  NM_001282511        NPIPA8
2   chr16   18162429       18728302     NR_003569       ABCC6P1
3   chr16   18162429       18728302     NR_036140     MIR3179-1
4   chr16   18162429       18728302     NR_036142     MIR3180-2
5   chr16   18162429       18728302     NR_036144     MIR3180-3
6   chr16   18162429       18728302     NR_037442     MIR3670-1
7   chr16   18162429       18728302     NR_103772  LOC100288162
8   chr16   18162429       18728302     NR_106971     MIR6511A4
9   chr16   18162429       18728302     NR_107060     MIR6770-2
10  chr20   25386948       25530986  NM_001318226          NINL
11  chr20   25386948       25530986     NM_021067         GINS1
12   chr6   65530249       65661217  NM_001142800           EYS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144690515      145123377  NM_001002810       PDE4DIP
7    chr1  144690515      145123377  NM_001277444         NBPF9
8    chr1  144690515      145123377  NM_001278267        NBPF20
9    chr1  144690515      145123377     NM_004892        SEC22B
11   chr1  144690515      145123377     NR_102405         NBPF8
12   chr1  145351606      145528470  NM_001039888      ANKRD34A
13   chr1  145351606      145528470  NM_001184795        PEX11B
14   chr1  145351606      145528470  NM_001277444         NBPF9
15   chr1  145351606      145528470  NM_001278267        NBPF20
16   chr1  145351606      145528470  NM_001302371        NBPF10
17   chr1  145351606      145528470  NM_001303040        ITGA10
18   chr1  145351606      145528470  NM_001313972         TXNIP
20   chr1  145351606      145528470     NM_005105         RBM8A
22   chr1  145351606      145528470     NM_032305       POLR3GL
23   chr1  145351606      145528470     NM_145277          HFE2
24   chr1  145351606      145528470     NM_153713         LIX1L
25   chr1  145351606      145528470     NR_002328        GNRHR2
29   chr1  145351606      145528470     NR_104217       NBPF25P
30   chr1  145351606      145528470     NR_125967  LOC101928979
31   chr1  245053380      245229717  NM_001143943        EFCAB2
34   chr1  245053380      245229717     NR_111907  LOC101928068
35  chr12   10578038       11829870  NM_001097643       TAS2R30
36  chr12   10578038       11829870  NM_001110213          PRH2
37  chr12   10578038       11829870  NM_001261399          PRB4
38  chr12   10578038       11829870  NM_001271592      SMIM10L1
39  chr12   10578038       11829870  NM_001291315          PRH1
40  chr12   10578038       11829870  NM_001300739        MAGOHB
41  chr12   10578038       11829870  NM_001304448         KLRC1
42  chr12   10578038       11829870  NM_001316893  PRH1-TAS2R14
43  chr12   10578038       11829870     NM_001987          ETV6
..    ...        ...            ...           ...           ...
53  chr12   10578038       11829870     NM_023917        TAS2R9
54  chr12   10578038       11829870     NM_023918        TAS2R8
55  chr12   10578038       11829870     NM_023919        TAS2R7
56  chr12   10578038       11829870     NM_023920       TAS2R13
57  chr12   10578038       11829870     NM_023921       TAS2R10
58  chr12   10578038       11829870     NM_023922       TAS2R14
59  chr12   10578038       11829870     NM_176884       TAS2R43
60  chr12   10578038       11829870     NM_176885       TAS2R31
61  chr12   10578038       11829870     NM_176887       TAS2R46
62  chr12   10578038       11829870     NM_176888       TAS2R19
63  chr12   10578038       11829870     NM_176889       TAS2R20
64  chr12   10578038       11829870     NM_176890       TAS2R50
65  chr12   10578038       11829870     NM_181429       TAS2R42
67  chr12   10578038       11829870     NR_028045        KLRA1P
68  chr12   10578038       11829870     NR_033890     LINC01252
69  chr12   10578038       11829870     NR_037918     PRH1-PRR4
70  chr12   10578038       11829870     NR_120463  LOC101928162
72  chr12   72594067       74192075     NM_013381         TRHDE
73  chr12   72594067       74192075     NR_026836     TRHDE-AS1
75  chr12   72594067       74192075     NR_110130  LOC101928137
76  chr14   21907652       22104960  NM_001005465        OR10G3
77  chr14   21907652       22104960  NM_001005466        OR10G2
78  chr14   21907652       22104960  NM_001163380         RAB2B
79  chr14   21907652       22104960  NM_001303523          TOX4
80  chr14   21907652       22104960     NM_019852        METTL3
82  chr14   21907652       22104960     NR_111966         SALL2
84  chr17   63573250       63817668  NM_001037325        CEP112
87  chr20   14755566       14890884     NM_080676       MACROD2
88  chr20   14755566       14890884     NR_037841   MACROD2-AS1
90   chr3  105303404      105609675  NM_001321786          CBLB

[67 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    5130732        5463084  NM_001047160          NET1
1   chr10    5130732        5463084  NM_001253908        AKR1C3
3   chr10    5130732        5463084     NM_001818        AKR1C4
5   chr10    5130732        5463084     NM_024803        TUBAL3
6   chr10    5130732        5463084     NM_053049          UCN3
7   chr10    5130732        5463084     NR_027916       AKR1C8P
8   chr16   21492708       21873809  NM_001077180        METTL9
9   chr16   21492708       21873809  NM_001161683          OTOA
11  chr16   21492708       21873809  NM_001310148        NPIPB4
12  chr16   21492708       21873809     NM_005849         IGSF6
15  chr16   21492708       21873809     NR_002594      SLC7A5P2
16  chr16   21492708       21873809     NR_003370        RRN3P1
17  chr16   21492708       21873809     NR_027155        SMG1P3
18  chr16   21492708       21873809     NR_049833     MIR3680-2
19  chr16   21492708       21873809     NR_110930  LOC101927814
20  chr22   17224574       17336259     NM_175878          XKR3
21  chr22   17224574       17336259     NR_003607       HSFY1P1
22  chr22   17224574       17336259     NR_134584  LOC101929350
23   chr7   14871668       15093808     NM_004080          DGKB
25   chr7   88935406       89160309     NM_181646       ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21797216       22025639  NM_001163380     RAB2B
1   chr14   21797216       22025639  NM_001170629      CHD8
2   chr14   21797216       22025639  NM_001303523      TOX4
3   chr14   21797216       22025639     NM_007192   SUPT16H
4   chr14   21797216       22025639     NM_019852    METTL3
5   chr14   21797216       22025639     NM_020366   RPGRIP1
8   chr14   21797216       22025639     NR_002916    SNORD8
9   chr14   21797216       22025639     NR_003029    SNORD9
10  chr14   21797216       22025639     NR_111966     SALL2
12   chr7  110698452      110811066  NM_001099658     LRRN3
13   chr7  110698452      110811066  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21762343       22033339  NM_001163380         RAB2B
1   chr14   21762343       22033339  NM_001170629          CHD8
2   chr14   21762343       22033339  NM_001303523          TOX4
3   chr14   21762343       22033339     NM_007192       SUPT16H
4   chr14   21762343       22033339     NM_019852        METTL3
5   chr14   21762343       22033339     NM_020366       RPGRIP1
8   chr14   21762343       22033339     NR_002916        SNORD8
9   chr14   21762343       22033339     NR_003029        SNORD9
10  chr14   21762343       22033339     NR_111966         SALL2
12  chr14   21920204       22122069  NM_001005465        OR10G3
13  chr14   21920204       22122069  NM_001005466        OR10G2
14  chr14   21920204       22122069  NM_001163380         RAB2B
15  chr14   21920204       22122069  NM_001303523          TOX4
16  chr14   21920204       22122069     NM_019852        METTL3
18  chr14   21920204       22122069     NR_111966         SALL2
20   chr2  133621573      133734863     NM_207363        NCKAP5
21   chr2  133621573      133734863     NR_135572  LOC101928185
22   chr2  202157897      202329662  NM_001206864        STRADB
23   chr2  202157897      202329662     NM_015049         TRAK2
24   chr2  202157897      202329662     NR_110620      ALS2CR12
25   chr5  104409255      104610353     NR_000039       RAB9BP1
26   chr9   44304864       44425797     NR_121564  LOC101927827
27   chr9   44304864       44425797     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81469087       81608015  NM_001278495        NUTM2B
1   chr10   81469087       81608015     NR_029407     LOC642361
2   chr10   81469087       81608015     NR_120611    NUTM2B-AS1
5   chr11   89105204       89974061  NM_001105522      TRIM49D2
7   chr11   89105204       89974061  NM_001136486        TRIM64
8   chr11   89105204       89974061  NM_001143837          NOX4
9   chr11   89105204       89974061  NM_001143975        UBTFL1
10  chr11   89105204       89974061  NM_001144073       CHORDC1
11  chr11   89105204       89974061  NM_001164397       TRIM64B
12  chr11   89105204       89974061  NM_001195234       TRIM49C
13  chr11   89105204       89974061  NM_001206627      TRIM49D1
15  chr11   89105204       89974061  NM_001271942        TRIM77
20  chr11   89105204       89974061     NM_005467       NAALAD2
21  chr11   89105204       89974061     NM_020358        TRIM49
22  chr11   89105204       89974061     NM_153696        FOLH1B
23  chr11   89105204       89974061     NR_028346      TRIM53AP
26  chr14   21852865       21969458  NM_001163380         RAB2B
27  chr14   21852865       21969458  NM_001170629          CHD8
28  chr14   21852865       21969458  NM_001303523          TOX4
29  chr14   21852865       21969458     NM_019852        METTL3
32  chr14   21852865       21969458     NR_002916        SNORD8
33  chr14   21852865       21969458     NR_003029        SNORD9
34   chr4    3910594        4013304     NR_130741       FAM86EP
35   chr9   67192531       67295712     NR_002817        AQP7P1
36   chr9   67192531       67295712     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145340230      145467172  NM_001277444         NBPF9
1    chr1  145340230      145467172  NM_001278267        NBPF20
2    chr1  145340230      145467172  NM_001302371        NBPF10
3    chr1  145340230      145467172  NM_001313972         TXNIP
5    chr1  145340230      145467172     NM_032305       POLR3GL
6    chr1  145340230      145467172     NM_145277          HFE2
7    chr1  145340230      145467172     NR_104217       NBPF25P
8    chr1  145340230      145467172     NR_125967  LOC101928979
9   chr13   95252491       95416456     NM_007084         SOX21
10  chr13   95252491       95416456     NM_180989        GPR180
11  chr13   95252491       95416456     NR_046514     SOX21-AS1
12  chr13   95252491       95416456     NR_110754  LOC101927284
13  chr13   95252491       95416456     NR_120417  LOC101927248
14  chr16   16390080       16548275  NM_001282511        NPIPA8
15  chr16   16390080       16548275     NR_036140     MIR3179-1
16  chr16   16390080       16548275     NR_036141     MIR3180-1
17  chr16   16390080       16548275     NR_036142     MIR3180-2
18  chr16   16390080       16548275     NR_036447        PKD1P1
19  chr16   16390080       16548275     NR_103772  LOC100288162
20  chr16   16390080       16548275     NR_106766     MIR6511A1
21  chr16   16390080       16548275     NR_106971     MIR6511A4
22  chr16   16390080       16548275     NR_107060     MIR6770-2
23  chr16   16390080       16548275     NR_128713     MIR3670-4
24   chr7  110608567      110896522  NM_001099658         LRRN3
25   chr7  110608567      110896522  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245036101      245229996  NM_001143943        EFCAB2
3    chr1  245036101      245229996     NR_111907  LOC101928068
4   chr14   21803751       21930955  NM_001163380         RAB2B
5   chr14   21803751       21930955  NM_001170629          CHD8
6   chr14   21803751       21930955     NM_007192       SUPT16H
7   chr14   21803751       21930955     NM_020366       RPGRIP1
10  chr14   21803751       21930955     NR_002916        SNORD8
11  chr14   21803751       21930955     NR_003029        SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21798499       21958869  NM_001163380         RAB2B
1   chr14   21798499       21958869  NM_001170629          CHD8
2   chr14   21798499       21958869  NM_001303523          TOX4
3   chr14   21798499       21958869     NM_007192       SUPT16H
4   chr14   21798499       21958869     NM_020366       RPGRIP1
7   chr14   21798499       21958869     NR_002916        SNORD8
8   chr14   21798499       21958869     NR_003029        SNORD9
9   chr14   27033116       27553677     NM_002515         NOVA1
11  chr14   27033116       27553677     NR_036193       MIR4307
12  chr14   27033116       27553677     NR_110033  LOC101927062
13  chr14   27033116       27553677     NR_110041     MIR4307HG
14  chr14   27033116       27553677     NR_110556  LOC102724890
15  chr20   14615233       15054814     NM_080676       MACROD2
16  chr20   14615233       15054814     NR_037841   MACROD2-AS1
18   chr7   16460073       16618773  NM_001101417          ISPD
19   chr7   16460073       16618773  NM_001195280        LRRC72
20   chr7   16460073       16618773     NM_015464       SOSTDC1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21782163       21995563  NM_001163380         RAB2B
1   chr14   21782163       21995563  NM_001170629          CHD8
2   chr14   21782163       21995563  NM_001303523          TOX4
3   chr14   21782163       21995563     NM_007192       SUPT16H
4   chr14   21782163       21995563     NM_019852        METTL3
5   chr14   21782163       21995563     NM_020366       RPGRIP1
8   chr14   21782163       21995563     NR_002916        SNORD8
9   chr14   21782163       21995563     NR_003029        SNORD9
10  chr14   21782163       21995563     NR_111966         SALL2
12  chr15   21179989       21341643     NR_040094     LINC01193
13   chr2  108731125      108966185  NM_001008743       SULT1C3
14   chr2  108731125      108966185     NM_001056       SULT1C2
16   chr2  108731125      108966185     NR_037191     SULT1C2P1
17   chr2  108731125      108966185     NR_131251     LINC01594
18  chr20    5169377        5643383     NM_003818          CDS2
19  chr20    5169377        5643383     NM_019593        GPCPD1
20  chr20    5169377        5643383     NM_144773        PROKR2
21  chr20    5169377        5643383     NR_015406     LINC00654
22  chr20    5169377        5643383     NR_029405     LOC643406
23  chr20    5169377        5643383     NR_038240     LINC00658
24  chr20    5169377        5643383     NR_109860  LOC101929207
25   chr3   60336573       60981875  NM_001320899          FHIT
26   chr3   60336573       60981875     NR_128708      MIR548BB
27   chr7   75882327       76169024  NM_001102594          DTX2
29   chr7   75882327       76169024  NM_001110199         SRRM3
30   chr7   75882327       76169024  NM_001110354           ZP3
31   chr7   75882327       76169024     NM_001540         HSPB1
33   chr7   75882327       76169024     NM_012479         YWHAG
34   chr7   75882327       76169024     NM_030570         UPK3B
35   chr7   75882327       76169024     NM_080744         SSC4D
36   chr7   75882327       76169024     NR_003262        FDPSP2
37   chr8    4018395        4285418     NM_033225         CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   96472464       96908961     NM_000769       CYP2C19
1   chr10   96472464       96908961     NM_000770        CYP2C8
2   chr10   96472464       96908961     NM_000771        CYP2C9
3   chr10   96472464       96908961     NM_000772       CYP2C18
4   chr14   21925753       22059727  NM_001005465        OR10G3
5   chr14   21925753       22059727  NM_001163380         RAB2B
6   chr14   21925753       22059727  NM_001303523          TOX4
7   chr14   21925753       22059727     NM_019852        METTL3
9   chr14   21925753       22059727     NR_111966         SALL2
11  chr16   21548443       21691831  NM_001077180        METTL9
13  chr16   21548443       21691831     NM_005849         IGSF6
14  chr16   21548443       21691831     NM_144672          OTOA
15  chr16   21548443       21691831     NR_110930  LOC101927814,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28708483       29252185  NM_001130414         APBA2
1   chr15   28708483       29252185  NM_001282468       GOLGA8M
2   chr15   28708483       29252185     NR_026589       WHAMMP2
3   chr15   28708483       29252185     NR_033351       GOLGA8F
4   chr15   28708483       29252185     NR_033353       GOLGA8G
5   chr15   28708483       29252185     NR_036443       HERC2P9
6   chr15   28708483       29252185     NR_036475  LOC100289656
7   chr15   28708483       29252185     NR_037599     PDCD6IPP2
8   chr15   28708483       29252185     NR_039734     MIR4509-3
9   chr15   28708483       29252185     NR_047567     GOLGA6L7P
10   chr4   56357813       56504701  NM_001267843         CLOCK
12   chr4   56357813       56504701     NM_006681           NMU
13   chr4   56357813       56504701     NM_152401         PDCL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21863638       21965341  NM_001163380         RAB2B
1   chr14   21863638       21965341  NM_001170629          CHD8
2   chr14   21863638       21965341  NM_001303523          TOX4
5   chr14   21863638       21965341     NR_002916        SNORD8
6   chr16   21553264       21706975  NM_001077180        METTL9
7   chr16   21553264       21706975  NM_001161683          OTOA
9   chr16   21553264       21706975     NM_005849         IGSF6
11  chr16   21553264       21706975     NR_110930  LOC101927814
12  chr21   36035283       36169083  NM_001001890         RUNX1
13  chr21   36035283       36169083  NM_001317009         CLIC6
15  chr21   36035283       36169083     NR_024351     LINC00160
16  chr21   36035283       36169083     NR_038885     LINC01426
18  chr22   19884234       20057918     NM_000754          COMT
21  chr22   19884234       20057918  NM_001282512        TXNRD2
22  chr22   19884234       20057918  NM_001283116        TANGO2
25  chr22   19884234       20057918     NM_001670         ARVCF
28  chr22   19884234       20057918     NR_029706        MIR185
29  chr22   19884234       20057918     NR_039918       MIR4761
30   chr9   12098749       12761768     NM_000550         TYRP1
31   chr9   12098749       12761768     NR_125775   LURAP1L-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    9597024       10395918     NR_120636  LOC101928298
1    chr2  186259337      186660820     NM_173651         FSIP2
2    chr2  186259337      186660820     NR_110214  LOC101927196
5    chr2  186259337      186660820     NR_144453     FSIP2-AS1
7    chr8   19722761       20476114     NM_000237           LPL
8    chr8   19722761       20476114  NM_001135691       SLC18A1
9    chr8   19722761       20476114     NM_001693      ATP6V1B2
10   chr8   19722761       20476114     NM_021020         LZTS1
11   chr8   19722761       20476114     NR_047509     LZTS1-AS1
12   chr9     495140        2769280  NM_001130865         DMRT2
13   chr9     495140        2769280  NM_001256876         KANK1
14   chr9     495140        2769280  NM_001289396       SMARCA2
18   chr9     495140        2769280     NM_003383         VLDLR
21   chr9     495140        2769280     NM_021240         DMRT3
22   chr9     495140        2769280     NM_021951         DMRT1
23   chr9     495140        2769280     NM_133497         KCNV2
27   chr9     495140        2769280     NR_015375     VLDLR-AS1
28   chr9     495140        2769280     NR_110643     LINC01230
29   chr9   44265575       44495524     NR_121564  LOC101927827
30   chr9   44265575       44495524     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21503859       21942971  NM_001077180        METTL9
1   chr16   21503859       21942971  NM_001161683          OTOA
3   chr16   21503859       21942971  NM_001310148        NPIPB4
4   chr16   21503859       21942971     NM_005849         IGSF6
7   chr16   21503859       21942971     NR_002594      SLC7A5P2
8   chr16   21503859       21942971     NR_003370        RRN3P1
9   chr16   21503859       21942971     NR_027155        SMG1P3
10  chr16   21503859       21942971     NR_049833     MIR3680-2
11  chr16   21503859       21942971     NR_110930  LOC101927814
12  chr22   17177539       17688089  NM_001037814          GAB4
13  chr22   17177539       17688089  NM_001163079         CECR6
14  chr22   17177539       17688089  NM_001282227         CECR1
16  chr22   17177539       17688089  NM_001289905        IL17RA
17  chr22   17177539       17688089     NM_017829         CECR5
20  chr22   17177539       17688089     NM_175878          XKR3
22  chr22   17177539       17688089     NR_003607       HSFY1P1
23  chr22   17177539       17688089     NR_015352         CECR7
24  chr22   17177539       17688089     NR_024482     CECR5-AS1
25  chr22   17177539       17688089     NR_103793  LOC100996342
26  chr22   17177539       17688089     NR_134584  LOC101929350
27   chr7   64113889       64215949  NM_001282360        ZNF107
29   chr7   64113889       64215949     NR_106898       MIR6839
30   chr7  110538415      110780047  NM_001099658         LRRN3
31   chr7  110538415      110780047  NM_001244606        IMMP2L
33   chr9   28482588       28772464  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21905215       22076226  NM_001005465       OR10G3
1   chr14   21905215       22076226  NM_001163380        RAB2B
2   chr14   21905215       22076226  NM_001303523         TOX4
3   chr14   21905215       22076226     NM_019852       METTL3
4   chr14   21905215       22076226     NM_020920         CHD8
6   chr14   21905215       22076226     NR_111966        SALL2
8   chr15   41673510       41818703     NM_002220        ITPKA
9   chr15   41673510       41818703     NM_015138         RTF1
10  chr15   41673510       41818703     NM_015540        RPAP1
11  chr15   41673510       41818703     NM_206961          LTK
12  chr15   41673510       41818703     NR_045620      NDUFAF1
13   chr2   25184954       25294923  NM_001198559      DNAJC27
14   chr2   25184954       25294923  NM_001319099        EFR3B
16   chr2   25184954       25294923     NR_034113  DNAJC27-AS1
17   chr7   18398276       18563073  NM_001204144        HDAC9,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr13  113069394      114359057     NM_000131             F7
1   chr13  113069394      114359057     NM_000504            F10
2   chr13  113069394      114359057     NM_000705          ATP4B
3   chr13  113069394      114359057  NM_001008895          CUL4A
4   chr13  113069394      114359057  NM_001014283        DCUN1D2
5   chr13  113069394      114359057  NM_001112732          MCF2L
6   chr13  113069394      114359057  NM_001127202          PCID2
9   chr13  113069394      114359057  NM_001286278        TUBGCP3
11  chr13  113069394      114359057  NM_001286732          GRTP1
13  chr13  113069394      114359057  NM_001304433   LOC101928841
18  chr13  113069394      114359057     NM_002929           GRK1
20  chr13  113069394      114359057     NM_003891           PROZ
21  chr13  113069394      114359057     NM_005561          LAMP1
23  chr13  113069394      114359057     NM_007111          TFDP1
24  chr13  113069394      114359057     NM_015205         ATP11A
25  chr13  113069394      114359057     NM_017905          TMCO3
26  chr13  113069394      114359057     NM_138430        ADPRHL1
27  chr13  113069394      114359057     NM_145248         SPACA7
29  chr13  113069394      114359057     NM_207440       ATP11AUN
31  chr13  113069394      114359057     NR_034002      MCF2L-AS1
32  chr13  113069394      114359057     NR_046541      GRTP1-AS1
33  chr13  113069394      114359057     NR_046661     ATP11A-AS1
34  chr13  113069394      114359057     NR_107042        MIR8075
36  chr13  113069394      114359057     NR_126424        F10-AS1
37  chr16   15156545       18590712  NM_001004060          NOMO2
38  chr16   15156545       18590712  NM_001004067          NOMO3
39  chr16   15156545       18590712  NM_001040113          MYH11
40  chr16   15156545       18590712  NM_001079528          ABCC6
41  chr16   15156545       18590712  NM_001128423         MPV17L
42  chr16   15156545       18590712  NM_001142469       C16orf45
..    ...        ...            ...           ...            ...
54  chr16   15156545       18590712     NM_022166          XYLT1
56  chr16   15156545       18590712     NR_003569        ABCC6P1
57  chr16   15156545       18590712     NR_030159         MIR484
58  chr16   15156545       18590712     NR_036140      MIR3179-1
60  chr16   15156545       18590712     NR_036141      MIR3180-1
61  chr16   15156545       18590712     NR_036142      MIR3180-2
63  chr16   15156545       18590712     NR_036144      MIR3180-3
64  chr16   15156545       18590712     NR_036447         PKD1P1
65  chr16   15156545       18590712     NR_037442      MIR3670-1
66  chr16   15156545       18590712     NR_037466      MIR3180-4
67  chr16   15156545       18590712     NR_103772   LOC100288162
69  chr16   15156545       18590712     NR_106761        MIR6506
70  chr16   15156545       18590712     NR_106766      MIR6511A1
71  chr16   15156545       18590712     NR_106775      MIR6511B1
72  chr16   15156545       18590712     NR_106965      MIR6511B2
73  chr16   15156545       18590712     NR_106971      MIR6511A4
75  chr16   15156545       18590712     NR_107060      MIR6770-2
77  chr16   15156545       18590712     NR_123721  PKD1P6-NPIPP1
79  chr16   15156545       18590712     NR_125434   LOC100505915
80  chr16   15156545       18590712     NR_128713      MIR3670-4
81  chr16   15156545       18590712     NR_130755          FOPNL
82  chr16   15156545       18590712     NR_135179   LOC102723692
83   chr7   64083925       64221160  NM_001282360         ZNF107
85   chr7   64083925       64221160     NR_106898        MIR6839
86   chr9   67599951       68266392  NM_001012419      ANKRD20A3
87   chr9   67599951       68266392     NM_032250      ANKRD20A1
88   chr9   67599951       68266392     NR_027422         FAM27B
89   chr9   67599951       68266392     NR_103833        FAM27E3
90   chr9   67599951       68266392     NR_121606   LOC102723709
91   chr9   67599951       68266392     NR_144466   LOC105379807

[67 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr2  242456194      242590027  NM_001164356        THAP4
2    chr2  242456194      242590027     NM_032515          BOK
3    chr2  242456194      242590027     NM_178326        ATG4B
4    chr2  242456194      242590027     NR_033346      BOK-AS1
5   chr20   14695462       15070692     NM_080676      MACROD2
6   chr20   14695462       15070692     NR_037841  MACROD2-AS1
8   chr21   22637485       22910898     NM_004540        NCAM2
9    chr3   41286790       42359049     NM_000729          CCK
10   chr3   41286790       42359049  NM_001042646        TRAK1
15   chr3   41286790       42359049  NM_001322500         ULK4
18   chr4  165883488      166238065  NM_001012414       TRIM61
19   chr4  165883488      166238065  NM_001100389      TMEM192
20   chr4  165883488      166238065  NM_001161522        KLHL2
22   chr4  165883488      166238065     NM_152620       TRIM60
23   chr4  165883488      166238065     NR_026575         GK3P
24   chr6  130114069      130458523  NM_001007102      L3MBTL3
25   chr6  130114069      130458523  NM_001010876      TMEM244
28   chr7   77731213       77841598     NM_012301        MAGI2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145299752      145455004  NM_001277444         NBPF9
1    chr1  145299752      145455004  NM_001278267        NBPF20
2    chr1  145299752      145455004  NM_001302371        NBPF10
3    chr1  145299752      145455004  NM_001313972         TXNIP
5    chr1  145299752      145455004     NM_145277          HFE2
6    chr1  145299752      145455004     NR_104217       NBPF25P
7    chr1  145299752      145455004     NR_125967  LOC101928979
8   chr14   21893743       22122276  NM_001005465        OR10G3
9   chr14   21893743       22122276  NM_001005466        OR10G2
10  chr14   21893743       22122276  NM_001163380         RAB2B
11  chr14   21893743       22122276  NM_001170629          CHD8
12  chr14   21893743       22122276  NM_001303523          TOX4
13  chr14   21893743       22122276     NM_019852        METTL3
16  chr14   21893743       22122276     NR_111966         SALL2
18  chr19   33154940       33403937  NM_001105570        NUDT19
19  chr19   33154940       33403937  NM_001110822        TDRD12
20  chr19   33154940       33403937     NM_014270        SLC7A9
21  chr19   33154940       33403937     NM_032139       ANKRD27
22  chr19   33154940       33403937     NM_032816         CEP89
23  chr19   33154940       33403937     NM_207391        RGS9BP
24   chr4   69320907       69437939     NM_001077       UGT2B17
25   chr4   69320907       69437939     NM_014058     TMPRSS11E
26   chr6  162687755      162898644     NM_013988         PARK2
27   chr7   64122168       64364021  NM_001160183        ZNF138
28   chr7   64122168       64364021  NM_001282360        ZNF107
29   chr7   64122168       64364021     NM_021148        ZNF273
32   chr7   64122168       64364021     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17    1183095        2629879     NM_000430      PAFAH1B1
1   chr17    1183095        2629879  NM_001080779         MYO1C
3   chr17    1183095        2629879  NM_001098202          HIC1
4   chr17    1183095        2629879  NM_001163673         WDR81
7   chr17    1183095        2629879  NM_001164407         TLCD2
8   chr17    1183095        2629879  NM_001165920      SERPINF2
10  chr17    1183095        2629879  NM_001256827          SMG6
13  chr17    1183095        2629879  NM_001284498       SLC43A2
15  chr17    1183095        2629879  NM_001304803           SRR
16  chr17    1183095        2629879  NM_001329903      SERPINF1
19  chr17    1183095        2629879  NM_001346574          DPH1
20  chr17    1183095        2629879  NM_001346700         SGSM2
21  chr17    1183095        2629879     NM_002945          RPA1
22  chr17    1183095        2629879     NM_005206           CRK
23  chr17    1183095        2629879     NM_006224        PITPNA
24  chr17    1183095        2629879     NM_006445         PRPF8
26  chr17    1183095        2629879     NM_006761         YWHAE
28  chr17    1183095        2629879     NM_015229          CLUH
29  chr17    1183095        2629879     NM_016532        INPP5K
31  chr17    1183095        2629879     NM_018128          TSR1
32  chr17    1183095        2629879     NM_020310           MNT
33  chr17    1183095        2629879     NM_024086       METTL16
34  chr17    1183095        2629879     NM_031430          RILP
36  chr17    1183095        2629879     NM_052928         SMYD4
37  chr17    1183095        2629879     NM_080822         OVCA2
39  chr17    1183095        2629879     NM_172367         TUSC5
40  chr17    1183095        2629879     NM_178568       RTN4RL1
41  chr17    1183095        2629879     NR_003072      SNORD91A
42  chr17    1183095        2629879     NR_003073      SNORD91B
43  chr17    1183095        2629879     NR_028075        SCARF1
44  chr17    1183095        2629879     NR_028335     LOC284009
45  chr17    1183095        2629879     NR_028502       MIR22HG
46  chr17    1183095        2629879     NR_028514    PITPNA-AS1
47  chr17    1183095        2629879     NR_029494         MIR22
48  chr17    1183095        2629879     NR_029625        MIR212
49  chr17    1183095        2629879     NR_029674        MIR132
50  chr17    1183095        2629879     NR_106834       MIR6776
51  chr17    1183095        2629879     NR_110888  LOC101927839
52  chr17    1183095        2629879     NR_135642  LOC105371485
53  chr17    1183095        2629879     NR_136412  LOC105371592
54  chr22   17260162       17471145  NM_001037814          GAB4
55  chr22   17260162       17471145     NM_175878          XKR3
56  chr22   17260162       17471145     NR_003607       HSFY1P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82195667       82987309  NM_001297704        ADGRL2
2   chr14   21883952       21992303  NM_001163380         RAB2B
3   chr14   21883952       21992303  NM_001170629          CHD8
4   chr14   21883952       21992303  NM_001303523          TOX4
5   chr14   21883952       21992303     NM_019852        METTL3
8   chr14   21883952       21992303     NR_111966         SALL2
10   chr7   75112803       75256910  NM_001099415       POM121C
11   chr7   75112803       75256910  NM_001243198          HIP1
12   chr7   75112803       75256910  NM_001306141        SPDYE5
13   chr7   75112803       75256910     NR_028059        PMS2P3
14   chr7  110712957      111375976  NM_001099658         LRRN3
15   chr7  110712957      111375976  NM_001244606        IMMP2L
16   chr7  110712957      111375976     NM_014705         DOCK4
18   chr7  143008975      143120988     NM_000083         CLCN1
19   chr7  143008975      143120988  NM_001278297       FAM131B
20   chr7  143008975      143120988  NM_001322263  LOC100507507
21   chr7  143008975      143120988     NM_003461           ZYX
22   chr7  143008975      143120988     NM_005232         EPHA1
24   chr7  143008975      143120988     NR_033897     EPHA1-AS1
25   chr7  143008975      143120988     NR_106952       MIR6892
26   chr9  102086566      102196293     NR_102270          NAMA,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63159288       63374614     NR_047029  LINC00448
3   chr14   21901737       22170249  NM_001001912      OR4E2
4   chr14   21901737       22170249  NM_001005465     OR10G3
5   chr14   21901737       22170249  NM_001005466     OR10G2
6   chr14   21901737       22170249  NM_001163380      RAB2B
7   chr14   21901737       22170249  NM_001303523       TOX4
8   chr14   21901737       22170249  NM_001317107      OR4E1
9   chr14   21901737       22170249     NM_019852     METTL3
10  chr14   21901737       22170249     NM_020920       CHD8
12  chr14   21901737       22170249     NR_111966      SALL2
14  chr16   10550540       10699342  NM_001256160    ATF7IP2
15  chr16   10550540       10699342     NM_001424       EMP2
17   chr4    9041696        9212707  NM_001256852   USP17L10,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142495805      144021504  NM_001123068       PPIAL4G
1    chr1  142495805      144021504  NM_001287385        FAM72C
2    chr1  142495805      144021504  NM_001345942        FAM72D
6    chr1  142495805      144021504     NR_046228   ANKRD20A12P
7    chr1  142495805      144021504     NR_104014     LINC01138
8    chr1  142495805      144021504     NR_106967       MIR6077
9    chr1  142495805      144021504     NR_110761  LOC102723769
10   chr1  142495805      144021504     NR_111930  LOC100132057
12  chr10   25993395       26109080     NR_108067     LINC00836
13  chr16   15415899       15645118  NM_001128423        MPV17L
14  chr16   15415899       15645118  NM_001142469      C16orf45
15  chr16   15415899       15645118  NM_001277325        NPIPA5
17  chr16   18243358       18427200  NM_001282511        NPIPA8
18   chr7   71512803       71692079  NM_001017440         CALN1
20   chr9   67042155       67330864     NR_002817        AQP7P1
21   chr9   67042155       67330864     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21883157       22016407  NM_001163380        RAB2B
1   chr14   21883157       22016407  NM_001170629         CHD8
2   chr14   21883157       22016407  NM_001303523         TOX4
3   chr14   21883157       22016407     NM_019852       METTL3
6   chr14   21883157       22016407     NR_111966        SALL2
8   chr20   14712465       14974063     NM_080676      MACROD2
9   chr20   14712465       14974063     NR_037841  MACROD2-AS1
11   chr3  156076243      156177512  NM_001308217       KCNAB1
16   chr3  156076243      156177512     NR_046618   KCNAB1-AS1
17   chr3  197154014      197288499     NM_203314         BDH1
19   chr5  150108341      150298886  NM_001135643        DCTN4
21   chr5  150108341      150298886  NM_001145805         IRGM
22   chr5  150108341      150298886  NM_001172831       ZNF300
24   chr5  150108341      150298886     NM_032947        SMIM3,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88983869       89175772  NM_001099338      NUTM2A
1   chr10   88983869       89175772     NR_024397  NUTM2A-AS1
2   chr10   88983869       89175772     NR_029408   LINC00863
3   chr10   88983869       89175772     NR_046091   LINC00864
4   chr10   88983869       89175772     NR_075100      NUTM2D
6   chr13   63344243       63446035     NR_047029   LINC00448
9   chr14   21841129       22376953  NM_001001912       OR4E2
10  chr14   21841129       22376953  NM_001005465      OR10G3
11  chr14   21841129       22376953  NM_001005466      OR10G2
12  chr14   21841129       22376953  NM_001163380       RAB2B
13  chr14   21841129       22376953  NM_001170629        CHD8
14  chr14   21841129       22376953  NM_001303523        TOX4
15  chr14   21841129       22376953  NM_001317107       OR4E1
16  chr14   21841129       22376953     NM_007192     SUPT16H
17  chr14   21841129       22376953     NM_019852      METTL3
20  chr14   21841129       22376953     NR_002916      SNORD8
21  chr14   21841129       22376953     NR_003029      SNORD9
22  chr14   21841129       22376953     NR_111966       SALL2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   62500745       62810593  NM_001252079      USP15
2   chr12   62500745       62810593     NM_178539    FAM19A2
3   chr12   62500745       62810593     NR_106740    MIR6125
4   chr15   28811692       28922798     NR_036443    HERC2P9
5   chr16   18480474       18768429  NM_001004060      NOMO2
6   chr16   18480474       18768429     NR_003569    ABCC6P1
7   chr16   18480474       18768429     NR_036140  MIR3179-1
8   chr16   18480474       18768429     NR_036142  MIR3180-2
9   chr16   18480474       18768429     NR_036144  MIR3180-3
10  chr16   18480474       18768429     NR_037442  MIR3670-1
11   chr2   51207978       51329817  NM_001330079      NRXN1
14   chr2   51207978       51329817     NR_135237  LOC730100
15   chr7    3320026        3693729     NM_152744       SDK1
16   chr7   75748993       75973896  NM_001110199      SRRM3
17   chr7   75748993       75973896     NM_001540      HSPB1
18   chr7   75748993       75973896     NM_012479      YWHAG,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21720953       21944862  NM_001163380     RAB2B
1   chr14   21720953       21944862  NM_001170629      CHD8
2   chr14   21720953       21944862     NM_007192   SUPT16H
3   chr14   21720953       21944862     NM_020366   RPGRIP1
5   chr14   21720953       21944862     NM_031314    HNRNPC
7   chr14   21720953       21944862     NR_002916    SNORD8
8   chr14   21720953       21944862     NR_003029    SNORD9
9   chr14   42131127       42252268  NM_001346175     LRFN5
10   chr6  162667082      162956417     NM_013988     PARK2
11   chr9   38940074       39137193     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143640860      143784862  NM_001123068       PPIAL4G
1    chr1  143640860      143784862     NR_104014     LINC01138
2    chr1  143640860      143784862     NR_106967       MIR6077
3    chr1  143640860      143784862     NR_111930  LOC100132057
4   chr12   72713465       73010698     NM_013381         TRHDE
5   chr15   29774369       30057991  NM_001301025          TJP1
8   chr15   29774369       30057991     NM_015307      FAM189A1
9   chr15   29774369       30057991     NR_135221  LOC100130111
10   chr9   39069580       39329800     NM_033655       CNTNAP3
11   chr9   41486831       42946282  NM_001012419     ANKRD20A3
12   chr9   41486831       42946282  NM_001012421     ANKRD20A2
13   chr9   41486831       42946282  NM_001113541     SPATA31A5
14   chr9   41486831       42946282     NM_015667     SPATA31A7
15   chr9   41486831       42946282     NM_199244       FOXD4L4
16   chr9   41486831       42946282     NR_003528       ZNF658B
17   chr9   41486831       42946282     NR_003670        FGF7P3
18   chr9   41486831       42946282     NR_015363         GLIDR
19   chr9   41486831       42946282     NR_026558        AQP7P3
20   chr9   41486831       42946282     NR_026803       FAM74A1
21   chr9   41486831       42946282     NR_046175     LOC286297
22   chr9   41486831       42946282     NR_121570  LOC101928381
23   chr9   41486831       42946282     NR_121572      GXYLT1P3
26   chr9   41486831       42946282     NR_126048  LOC102724238
27   chr9   41486831       42946282     NR_126049     LOC554249
28   chr9   41486831       42946282     NR_135597  LOC101928195
29   chr9   41486831       42946282     NR_136299  LOC101929583
30   chr9   41486831       42946282     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143610814      145458704  NM_001002810       PDE4DIP
3    chr1  143610814      145458704  NM_001123068       PPIAL4G
4    chr1  143610814      145458704  NM_001135789       PPIAL4C
9    chr1  143610814      145458704  NM_001277444         NBPF9
10   chr1  143610814      145458704  NM_001278267        NBPF20
11   chr1  143610814      145458704  NM_001287385        FAM72C
12   chr1  143610814      145458704  NM_001302371        NBPF10
13   chr1  143610814      145458704  NM_001313972         TXNIP
14   chr1  143610814      145458704  NM_001345942        FAM72D
17   chr1  143610814      145458704     NM_004892        SEC22B
20   chr1  143610814      145458704     NM_032305       POLR3GL
21   chr1  143610814      145458704     NM_145277          HFE2
22   chr1  143610814      145458704     NM_203458      NOTCH2NL
24   chr1  143610814      145458704     NR_003242        PFN1P2
25   chr1  143610814      145458704     NR_024511     LINC00623
27   chr1  143610814      145458704     NR_102405         NBPF8
28   chr1  143610814      145458704     NR_104014     LINC01138
29   chr1  143610814      145458704     NR_104217       NBPF25P
30   chr1  143610814      145458704     NR_106967       MIR6077
31   chr1  143610814      145458704     NR_111930  LOC100132057
32   chr1  143610814      145458704     NR_111953     LINC00869
33   chr1  143610814      145458704     NR_125967  LOC101928979
35  chr10   67687885       67816943  NM_001127384        CTNNA3
37  chr15   20713536       20888260  NM_001145004      GOLGA6L6
38  chr15   20713536       20888260     NR_027411      GOLGA8CP
39  chr15   20713536       20888260     NR_027992        NBEAP1
40  chr18   40161798       40265347     NR_046174     LINC00907
41   chr7   82911474       83417105  NM_001178129        SEMA3E,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr10   68011747       68185720  NM_001127384        CTNNA3
2    chr14   21785730       29516891     NM_000257          MYH7
3    chr14   21785730       29516891     NM_000359          TGM1
4    chr14   21785730       29516891  NM_001001912         OR4E2
5    chr14   21785730       29516891  NM_001002000         GMPR2
7    chr14   21785730       29516891  NM_001005465        OR10G3
8    chr14   21785730       29516891  NM_001005466        OR10G2
9    chr14   21785730       29516891  NM_001014842        TM9SF1
10   chr14   21785730       29516891  NM_001018073          PCK2
11   chr14   21785730       29516891  NM_001039619         PRMT5
12   chr14   21785730       29516891  NM_001039771         CBLN3
13   chr14   21785730       29516891  NM_001042635          NGDN
14   chr14   21785730       29516891  NM_001048205          REC8
15   chr14   21785730       29516891  NM_001099274         TINF2
16   chr14   21785730       29516891  NM_001099780        PSMB11
17   chr14   21785730       29516891  NM_001126105        SLC7A7
19   chr14   21785730       29516891  NM_001130706      C14orf93
20   chr14   21785730       29516891  NM_001130725         PSMB5
21   chr14   21785730       29516891  NM_001136022        NFATC4
22   chr14   21785730       29516891  NM_001136050         DHRS1
23   chr14   21785730       29516891  NM_001143919         LTB4R
25   chr14   21785730       29516891  NM_001146028          JPH4
26   chr14   21785730       29516891  NM_001163380         RAB2B
27   chr14   21785730       29516891  NM_001163484        DCAF11
28   chr14   21785730       29516891  NM_001164692        LTB4R2
29   chr14   21785730       29516891  NM_001164815         ACIN1
31   chr14   21785730       29516891  NM_001170629          CHD8
32   chr14   21785730       29516891  NM_001184739         TSSK4
33   chr14   21785730       29516891  NM_001193635       DHRS4L2
36   chr14   21785730       29516891  NM_001199823    NEDD8-MDP1
..     ...        ...            ...           ...           ...
120  chr14   21785730       29516891     NM_139247         ADCY4
122  chr14   21785730       29516891     NM_173527          REM2
125  chr14   21785730       29516891     NM_182836       RABGGTA
129  chr14   21785730       29516891     NM_203402         FITM1
130  chr14   21785730       29516891     NR_002916        SNORD8
131  chr14   21785730       29516891     NR_003029        SNORD9
132  chr14   21785730       29516891     NR_023921     DHRS4-AS1
134  chr14   21785730       29516891     NR_026731     LINC01551
137  chr14   21785730       29516891     NR_029595       MIR208A
138  chr14   21785730       29516891     NR_030624       MIR208B
139  chr14   21785730       29516891     NR_036193       MIR4307
140  chr14   21785730       29516891     NR_039856       MIR4707
141  chr14   21785730       29516891     NR_039992     LINC00645
145  chr14   21785730       29516891     NR_051979          IPO4
146  chr14   21785730       29516891     NR_102688       DHRS4L1
148  chr14   21785730       29516891     NR_106990       MIR7703
149  chr14   21785730       29516891     NR_110002  LOC101926933
150  chr14   21785730       29516891     NR_110032  LOC101927045
151  chr14   21785730       29516891     NR_110033  LOC101927062
152  chr14   21785730       29516891     NR_110041     MIR4307HG
154  chr14   21785730       29516891     NR_110555  LOC102724814
155  chr14   21785730       29516891     NR_110556  LOC102724890
156  chr14   21785730       29516891     NR_111966         SALL2
158  chr14   21785730       29516891     NR_120599     PRMT5-AS1
159  chr14   21785730       29516891     NR_125758     FOXG1-AS1
160  chr14   21785730       29516891     NR_126491          MHRT
161  chr14   21785730       29516891     NR_130461       MIR3171
162  chr14   21785730       29516891     NR_135255  LOC105370424
164  chr20   10865980       11210031     NR_109866  LOC101929413
165   chr7   62987745       63275462     NR_036246     MIR4283-1

[118 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67898297       68139315  NM_001127384        CTNNA3
2   chr16   18415351       18556142  NM_001004060         NOMO2
3   chr16   18415351       18556142  NM_001282511        NPIPA8
4   chr16   18415351       18556142     NR_036140     MIR3179-1
5   chr16   18415351       18556142     NR_036142     MIR3180-2
6   chr16   18415351       18556142     NR_036144     MIR3180-3
7   chr16   18415351       18556142     NR_037442     MIR3670-1
8   chr16   18415351       18556142     NR_103772  LOC100288162
9   chr16   18415351       18556142     NR_106971     MIR6511A4
10  chr16   18415351       18556142     NR_107060     MIR6770-2
11   chr5  127761822      127966828     NM_001999          FBN2
12   chr7  110517232      111010440  NM_001099658         LRRN3
13   chr7  110517232      111010440  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14680690       15150367     NM_080676      MACROD2
1  chr20   14680690       15150367     NR_037841  MACROD2-AS1
3   chr7   19667433       19840173  NM_001002926      TWISTNB
4   chr7   19667433       19840173     NM_152774      TMEM196
5   chr7   19667433       19840173     NR_036101      MIR3146,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21859598       21995008  NM_001163380     RAB2B
1   chr14   21859598       21995008  NM_001170629      CHD8
2   chr14   21859598       21995008  NM_001303523      TOX4
3   chr14   21859598       21995008     NM_019852    METTL3
6   chr14   21859598       21995008     NR_002916    SNORD8
7   chr14   21859598       21995008     NR_003029    SNORD9
8   chr14   21859598       21995008     NR_111966     SALL2
10   chr2   25517635       25720541  NM_001256304      DTNB
12   chr2   25517635       25720541  NM_001320892    DNMT3A
18   chr2   25517635       25720541     NR_031570   MIR1301
19   chr6  131013835      131185354  NM_001135554   EPB41L2
20   chr6  131013835      131185354  NM_001195597     SMLR1
22   chr7   17690895       17837830     NM_015132     SNX13,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   89334355       89622251     NR_038385     LOC728084
1    chr2  186517708      186687778     NM_173651         FSIP2
2    chr2  186517708      186687778     NR_110214  LOC101927196
5    chr2  186517708      186687778     NR_144453     FSIP2-AS1
7   chr20   40588802       41044807     NM_133170         PTPRT
8    chr4   71421776       74948866     NM_000477           ALB
9    chr4   71421776       74948866     NM_000583            GC
10   chr4   71421776       74948866     NM_000584         CXCL8
11   chr4   71421776       74948866     NM_000788           DCK
12   chr4   71421776       74948866  NM_001037442         RUFY3
13   chr4   71421776       74948866  NM_001098477         GRSF1
14   chr4   71421776       74948866  NM_001098484        SLC4A4
16   chr4   71421776       74948866     NM_001133           AFM
17   chr4   71421776       74948866     NM_001134           AFP
20   chr4   71421776       74948866  NM_001244766         MOB1B
22   chr4   71421776       74948866  NM_001270391        RASSF6
24   chr4   71421776       74948866  NM_001286771       ANKRD17
28   chr4   71421776       74948866     NM_001511         CXCL1
29   chr4   71421776       74948866     NM_002090         CXCL3
31   chr4   71421776       74948866     NM_002619           PF4
32   chr4   71421776       74948866     NM_002620         PF4V1
33   chr4   71421776       74948866     NM_002704          PPBP
34   chr4   71421776       74948866     NM_002993         CXCL6
35   chr4   71421776       74948866     NM_002994         CXCL5
37   chr4   71421776       74948866     NM_004885        NPFFR2
38   chr4   71421776       74948866     NM_014243       ADAMTS3
40   chr4   71421776       74948866     NM_016519          AMBN
41   chr4   71421776       74948866     NM_020368          UTP3
42   chr4   71421776       74948866     NM_031889          ENAM
44   chr4   71421776       74948866     NM_144646        JCHAIN
45   chr4   71421776       74948866     NM_173827         COX18
46   chr4   71421776       74948866     NR_026769        PPBPP2
47   chr4   71421776       74948866     NR_046377     LOC728040,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr12   27186720       27556944  NM_001080406     C12orf71
1   chr12   27186720       27556944  NM_001248002       ARNTL2
2   chr12   27186720       27556944     NM_015000       STK38L
3   chr12   27186720       27556944     NR_109975   ARNTL2-AS1
4   chr15   28583869       28882989     NR_033351      GOLGA8F
6   chr15   28583869       28882989     NR_033353      GOLGA8G
8   chr15   28583869       28882989     NR_039734    MIR4509-3
10  chr15   51453767       51558396     NM_031226      CYP19A1
11  chr15   51453767       51558396     NR_039863      MIR4713
12  chr20   14670857       15068924     NM_080676      MACROD2
13  chr20   14670857       15068924     NR_037841  MACROD2-AS1
15  chr22   17264012       17406016     NM_175878         XKR3
16  chr22   17264012       17406016     NR_003607      HSFY1P1
17   chr3  160032308      160195809  NM_001190241        IFT80
19   chr3  160032308      160195809  NM_001288753         SMC4
21   chr3  160032308      160195809     NM_173084       TRIM59
22   chr3  160032308      160195809     NR_029525      MIR16-2
23   chr3  160032308      160195809     NR_029663       MIR15B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143485468      144645961  NM_001123068       PPIAL4G
1    chr1  143485468      144645961  NM_001135789       PPIAL4C
2    chr1  143485468      144645961  NM_001277444         NBPF9
3    chr1  143485468      144645961  NM_001278267        NBPF20
4    chr1  143485468      144645961  NM_001287385        FAM72C
5    chr1  143485468      144645961  NM_001345942        FAM72D
9    chr1  143485468      144645961     NR_003242        PFN1P2
10   chr1  143485468      144645961     NR_024511     LINC00623
12   chr1  143485468      144645961     NR_102405         NBPF8
13   chr1  143485468      144645961     NR_104014     LINC01138
14   chr1  143485468      144645961     NR_106967       MIR6077
15   chr1  143485468      144645961     NR_111930  LOC100132057
16   chr1  143485468      144645961     NR_111953     LINC00869
18   chr1  185902799      186046831     NM_031935         HMCN1
19   chr1  187060044      187162377     NR_126347     LINC01036
20  chr14   21761640       21951744  NM_001163380         RAB2B
21  chr14   21761640       21951744  NM_001170629          CHD8
22  chr14   21761640       21951744  NM_001303523          TOX4
23  chr14   21761640       21951744     NM_007192       SUPT16H
24  chr14   21761640       21951744     NM_020366       RPGRIP1
27  chr14   21761640       21951744     NR_002916        SNORD8
28  chr14   21761640       21951744     NR_003029        SNORD9
29   chr6   20827900       21331522     NM_017774        CDKAL1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16377467       16507126  NM_001004067         NOMO3
1   chr16   16377467       16507126  NM_001282511        NPIPA8
2   chr16   16377467       16507126     NR_036140     MIR3179-1
3   chr16   16377467       16507126     NR_036141     MIR3180-1
4   chr16   16377467       16507126     NR_036142     MIR3180-2
5   chr16   16377467       16507126     NR_036447        PKD1P1
6   chr16   16377467       16507126     NR_103772  LOC100288162
7   chr16   16377467       16507126     NR_106766     MIR6511A1
8   chr16   16377467       16507126     NR_106971     MIR6511A4
9   chr16   16377467       16507126     NR_107060     MIR6770-2
10  chr16   16377467       16507126     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21758133       21859040  NM_001170629          CHD8
1   chr14   21758133       21859040     NM_007192       SUPT16H
2   chr14   21758133       21859040     NM_020366       RPGRIP1
4   chr15   28215348       28573611     NM_000275          OCA2
6   chr15   28215348       28573611     NM_004667         HERC2
7   chr16   21540104       22008242  NM_001077180        METTL9
8   chr16   21540104       22008242  NM_001161683          OTOA
10  chr16   21540104       22008242  NM_001310148        NPIPB4
11  chr16   21540104       22008242     NM_003366        UQCRC2
12  chr16   21540104       22008242     NM_005849         IGSF6
15  chr16   21540104       22008242     NM_173806         PDZD9
16  chr16   21540104       22008242     NR_003370        RRN3P1
17  chr16   21540104       22008242     NR_110930  LOC101927814
18   chr6  162451104      162737507     NM_013988         PARK2
19   chr7   64084289       64194375  NM_001282360        ZNF107
21   chr7   64084289       64194375     NR_106898       MIR6839
22   chr9   10022040       10123498     NM_002839         PTPRD
23   chr9   30257104       30469280     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21762146       21873790  NM_001170629          CHD8
1   chr14   21762146       21873790     NM_007192       SUPT16H
2   chr14   21762146       21873790     NM_020366       RPGRIP1
4   chr14   21762146       21873790     NR_002916        SNORD8
5   chr14   21762146       21873790     NR_003029        SNORD9
6   chr15   77869724       77981874  NM_001301186        LINGO1
16  chr15   77869724       77981874     NR_045123    LINGO1-AS1
17  chr15   77869724       77981874     NR_120361    LINGO1-AS2
18  chr16   83082987       83207775  NM_001220488         CDH13
20   chr2  186176278      187161857     NM_173651         FSIP2
21   chr2  186176278      187161857     NR_110214  LOC101927196
24   chr2  186176278      187161857     NR_110218     LINC01473
25   chr2  186176278      187161857     NR_144453     FSIP2-AS1
27   chr4   30704778       30896057  NM_001173523         PCDH7
30   chr9    9530797        9747251     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21760494       21869770  NM_001170629      CHD8
1   chr14   21760494       21869770     NM_007192   SUPT16H
2   chr14   21760494       21869770     NM_020366   RPGRIP1
4   chr14   21760494       21869770     NR_002916    SNORD8
5   chr14   21760494       21869770     NR_003029    SNORD9
6   chr14   21859813       22011196  NM_001163380     RAB2B
7   chr14   21859813       22011196  NM_001170629      CHD8
8   chr14   21859813       22011196  NM_001303523      TOX4
9   chr14   21859813       22011196     NM_019852    METTL3
12  chr14   21859813       22011196     NR_002916    SNORD8
13  chr14   21859813       22011196     NR_003029    SNORD9
14  chr14   21859813       22011196     NR_111966     SALL2
16   chr2  193628687      193734437     NR_002769    PCGEM1
17   chr4    8959168        9250026  NM_001256852  USP17L10
18   chr4    8959168        9250026  NM_001256853  USP17L12
19   chr4    8959168        9250026  NM_001256854  USP17L11
20   chr4    8959168        9250026  NM_001256855  USP17L13
21   chr4    8959168        9250026  NM_001256857  USP17L17
22   chr4    8959168        9250026  NM_001256894  USP17L15,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102422897      102851322     NR_110211         OLFM3
1    chr1  143521850      144261081  NM_001123068       PPIAL4G
2    chr1  143521850      144261081  NM_001278267        NBPF20
3    chr1  143521850      144261081  NM_001287385        FAM72C
4    chr1  143521850      144261081  NM_001345942        FAM72D
8    chr1  143521850      144261081     NR_104014     LINC01138
9    chr1  143521850      144261081     NR_106967       MIR6077
10   chr1  143521850      144261081     NR_111930  LOC100132057
12  chr15   20662222       20788787  NM_001145004      GOLGA6L6
13  chr15   20662222       20788787     NR_027411      GOLGA8CP
14  chr15   20662222       20788787     NR_036432       HERC2P3
15   chr2   53513827       53983396  NM_001164165    GPR75-ASB3
16   chr2   53513827       53983396  NM_001201965          ASB3
18   chr5  175408421      175510274  NM_001265615       FAM153B
19   chr5  175408421      175510274     NR_103794  LOC100996385,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   80991249       81117620  NM_001145026     PTPRQ
1  chr12   80991249       81117620     NM_002469      MYF6
2  chr12   80991249       81117620     NM_005593      MYF5
3  chr18   55828010       55928471  NM_001144964    NEDD4L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   37912382       38363747     NR_135110  LOC105376633
1   chr11   48375913       48545189  NM_001005512        OR4A47
2   chr11   60262316       60504169  NM_001278320        MS4A13
3   chr11   60262316       60504169  NM_001310141        MS4A18
4   chr11   60262316       60504169     NM_017716        MS4A12
5   chr11   60262316       60504169     NM_031457         MS4A8
6   chr11   60262316       60504169     NR_026946     LINC00301
7   chr16   68553288       68768614  NM_001305204         ZFP90
9   chr16   68553288       68768614  NM_001317195          CDH3
10   chr3   60457746       60607630  NM_001320899          FHIT
11   chr3   60457746       60607630     NR_128708      MIR548BB
12   chr4    8980968        9616397  NM_001040448       DEFB131
13   chr4    8980968        9616397  NM_001242326      USP17L25
21   chr4    8980968        9616397  NM_001256852      USP17L10
22   chr4    8980968        9616397  NM_001256853      USP17L12
24   chr4    8980968        9616397  NM_001256854      USP17L11
27   chr4    8980968        9616397  NM_001256855      USP17L13
28   chr4    8980968        9616397  NM_001256857      USP17L17
29   chr4    8980968        9616397  NM_001256860      USP17L19
30   chr4    8980968        9616397  NM_001256861      USP17L20
31   chr4    8980968        9616397  NM_001256894      USP17L15
32   chr4    8980968        9616397     NR_027279      USP17L6P
33   chr4    8980968        9616397     NR_031688      MIR548I2
34   chr4    8980968        9616397     NR_046416      USP17L9P
35   chr5  124878309      124995250     NR_109887  LOC101927460,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18359481       18504496  NM_001282511        NPIPA8
1  chr16   18359481       18504496     NR_036142     MIR3180-2
2  chr16   18359481       18504496     NR_036144     MIR3180-3
3  chr16   18359481       18504496     NR_037442     MIR3670-1
4  chr16   18359481       18504496     NR_103772  LOC100288162
5  chr16   18359481       18504496     NR_106971     MIR6511A4
6  chr16   18359481       18504496     NR_107060     MIR6770-2
7   chr3  105489701      106400577  NM_001321786          CBLB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   14898261       15000504     NM_015209          KAZN
2   chr11   60290003       61541835  NM_001079807          PGA3
3   chr11   60290003       61541835  NM_001079808          PGA4
4   chr11   60290003       61541835  NM_001127392          MYRF
5   chr11   60290003       61541835  NM_001142565         CPSF7
6   chr11   60290003       61541835  NM_001145077       LRRC10B
7   chr11   60290003       61541835  NM_001161452      CYB561A3
8   chr11   60290003       61541835  NM_001170753       PPP1R32
9   chr11   60290003       61541835  NM_001173990       TMEM216
10  chr11   60290003       61541835  NM_001278320        MS4A13
12  chr11   60290003       61541835  NM_001300773          SYT7
13  chr11   60290003       61541835  NM_001310141        MS4A18
14  chr11   60290003       61541835  NM_001330281       TMEM138
15  chr11   60290003       61541835  NM_001346456           CD5
16  chr11   60290003       61541835     NM_001923          DDB1
17  chr11   60290003       61541835     NM_004778        PTGDR2
18  chr11   60290003       61541835     NM_006133         DAGLA
19  chr11   60290003       61541835     NM_006725           CD6
22  chr11   60290003       61541835     NM_014224          PGA5
23  chr11   60290003       61541835     NM_014502        PRPF19
24  chr11   60290003       61541835     NM_015533          TKFC
26  chr11   60290003       61541835     NM_017841        SDHAF2
27  chr11   60290003       61541835     NM_017870      TMEM132A
28  chr11   60290003       61541835     NM_017966        VPS37C
29  chr11   60290003       61541835     NM_024092       TMEM109
30  chr11   60290003       61541835     NM_024098        CCDC86
32  chr11   60290003       61541835     NM_031457         MS4A8
33  chr11   60290003       61541835     NM_152717        MS4A15
34  chr11   60290003       61541835     NM_152718          VWCE
35  chr11   60290003       61541835     NM_206893        MS4A10
36  chr11   60290003       61541835     NM_207341           ZP1
37  chr11   60290003       61541835     NR_002775       RPLP0P2
38  chr11   60290003       61541835     NR_026882  DKFZP434K028
39  chr11   60290003       61541835     NR_026946     LINC00301
40  chr11   60290003       61541835     NR_027391       SLC15A3
41  chr11   60290003       61541835     NR_039708       MIR4488
42  chr11   60290003       61541835     NR_110189  LOC101927495
43  chr14   21838144       22392040  NM_001001912         OR4E2
44  chr14   21838144       22392040  NM_001005465        OR10G3
45  chr14   21838144       22392040  NM_001005466        OR10G2
46  chr14   21838144       22392040  NM_001163380         RAB2B
47  chr14   21838144       22392040  NM_001170629          CHD8
48  chr14   21838144       22392040  NM_001303523          TOX4
49  chr14   21838144       22392040  NM_001317107         OR4E1
50  chr14   21838144       22392040     NM_007192       SUPT16H
51  chr14   21838144       22392040     NM_019852        METTL3
54  chr14   21838144       22392040     NR_002916        SNORD8
55  chr14   21838144       22392040     NR_003029        SNORD9
56  chr14   21838144       22392040     NR_111966         SALL2
58  chr16   79759240       79884250     NR_104660     LINC01229
60  chr16   79759240       79884250     NR_104663        MAFTRR
61   chr2  117686726      119122216  NM_001321332        INSIG2
63   chr2  117686726      119122216     NM_006773         DDX18
64   chr2  117686726      119122216     NM_019044        CCDC93
65   chr5  146433643      146585232  NM_001271899       PPP2R2B
68   chr6  140434010      140566422     NR_037441       MIR3668,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   22464662       22920084     NR_103810     LINC00540
1   chr16   21472801       21620621  NM_001077180        METTL9
3   chr16   21472801       21620621     NR_002594      SLC7A5P2
4   chr16   21472801       21620621     NR_027155        SMG1P3
5   chr16   21472801       21620621     NR_049833     MIR3680-2
6   chr16   21472801       21620621     NR_110930  LOC101927814
7   chr16   71103126       71504625  NM_001099642         CMTR2
8   chr16   71103126       71504625  NM_001198542         HYDIN
10  chr16   71103126       71504625  NM_001304492         ZNF23
15  chr16   71103126       71504625     NM_001740         CALB2
19   chr2  167167156      167463661     NM_002976         SCN7A
20   chr2  167167156      167463661     NM_002977         SCN9A,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr17   14140386       14486055     NM_006041     HS3ST3B1
1   chr17   14140386       14486055     NR_026880     MGC12916
2    chr2  107678920      110228840  NM_001008743      SULT1C3
3    chr2  107678920      110228840     NM_001056      SULT1C2
4    chr2  107678920      110228840  NM_001099289       SH3RF3
5    chr2  107678920      110228840  NM_001193482        LIMS1
10   chr2  107678920      110228840  NM_001303106      CCDC138
11   chr2  107678920      110228840  NM_001305006       SLC5A7
14   chr2  107678920      110228840     NM_006267       RANBP2
15   chr2  107678920      110228840     NM_006588      SULT1C4
16   chr2  107678920      110228840     NM_022336         EDAR
17   chr2  107678920      110228840     NM_182588        RGPD4
18   chr2  107678920      110228840     NR_024439    RGPD4-AS1
19   chr2  107678920      110228840     NR_028063         GCC2
20   chr2  107678920      110228840     NR_029193   SH3RF3-AS1
21   chr2  107678920      110228840     NR_036223      MIR4265
22   chr2  107678920      110228840     NR_036224      MIR4266
23   chr2  107678920      110228840     NR_037191    SULT1C2P1
24   chr2  107678920      110228840     NR_049853     MIR548AU
25   chr2  107678920      110228840     NR_126369       GACAT1
27   chr2  107678920      110228840     NR_131251    LINC01594
28   chr2  107678920      110228840     NR_135071    LINC01593
29   chr2  107678920      110228840     NR_135290     GCC2-AS1
30  chr20   14652980       14984314     NM_080676      MACROD2
31  chr20   14652980       14984314     NR_037841  MACROD2-AS1
33   chr7  110382451      110486954  NM_001244606       IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72683069       72864530     NM_013381         TRHDE
1   chr15   28611878       29201917  NM_001282468       GOLGA8M
2   chr15   28611878       29201917     NR_026589       WHAMMP2
3   chr15   28611878       29201917     NR_033351       GOLGA8F
5   chr15   28611878       29201917     NR_033353       GOLGA8G
7   chr15   28611878       29201917     NR_036443       HERC2P9
8   chr15   28611878       29201917     NR_036475  LOC100289656
9   chr15   28611878       29201917     NR_037599     PDCD6IPP2
10  chr15   28611878       29201917     NR_039734     MIR4509-3
12  chr15   28611878       29201917     NR_047567     GOLGA6L7P
13   chr4   94203990       94702460     NM_001510         GRID2
14   chr7   64166679       64318781  NM_001160183        ZNF138
15   chr7   64166679       64318781  NM_001282360        ZNF107
17   chr7   75810808       75964174  NM_001110199         SRRM3
18   chr7   75810808       75964174     NM_001540         HSPB1
19   chr7   75810808       75964174     NM_012479         YWHAG,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    1137966        1257454  NM_001304359     MUC5AC
1   chr11    1137966        1257454     NM_002458      MUC5B
2   chr12   81004542       81182684  NM_001145026      PTPRQ
3   chr12   81004542       81182684     NM_002469       MYF6
4   chr12   81004542       81182684     NM_005593       MYF5
5   chr12   81004542       81182684     NR_120468  LINC01490
6   chr14   47800455       48011544  NM_001113498      MDGA2
9   chr16   29556169       29698632  NM_001030288        SPN
10  chr16   29556169       29698632  NM_001318249       QPRT
12  chr16   29556169       29698632     NR_049833  MIR3680-2
13  chr16   29556169       29698632     NR_135305     SMG1P2
15  chr20   14619895       14794583     NM_080676    MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28588880       30212836  NM_001130414         APBA2
1   chr15   28588880       30212836  NM_001282468       GOLGA8M
2   chr15   28588880       30212836  NM_001301025          TJP1
5   chr15   28588880       30212836     NM_015307      FAM189A1
6   chr15   28588880       30212836     NM_138704        NSMCE3
7   chr15   28588880       30212836     NR_026589       WHAMMP2
8   chr15   28588880       30212836     NR_033351       GOLGA8F
10  chr15   28588880       30212836     NR_033353       GOLGA8G
12  chr15   28588880       30212836     NR_036443       HERC2P9
13  chr15   28588880       30212836     NR_036475  LOC100289656
14  chr15   28588880       30212836     NR_037599     PDCD6IPP2
15  chr15   28588880       30212836     NR_039734     MIR4509-3
17  chr15   28588880       30212836     NR_047567     GOLGA6L7P
18  chr15   28588880       30212836     NR_135221  LOC100130111
19  chr16    6707228        6847693  NM_001142334        RBFOX1
22   chr4   69218567       69480165     NM_001077       UGT2B17
23   chr4   69218567       69480165     NM_014058     TMPRSS11E
24   chr4  121653793      121783967     NM_018699         PRDM5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83504927       83955197  NM_001142699          DLG2
4   chr14   21879074       21980804  NM_001163380         RAB2B
5   chr14   21879074       21980804  NM_001170629          CHD8
6   chr14   21879074       21980804  NM_001303523          TOX4
7   chr14   21879074       21980804     NM_019852        METTL3
10   chr2   78277042       78432513     NR_110287  LOC101927948
11   chr2   78277042       78432513     NR_110288  LOC101927967
12   chr7    4057007        4248131  NM_001079653          SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   37599302       37700760  NM_001171170      SLC25A21
1   chr14   37599302       37700760  NM_001195296        MIPOL1
2   chr14   37599302       37700760     NR_033240  SLC25A21-AS1
3   chr16    6475476        6598403  NM_001308117        RBFOX1
5   chr20   14573638       14849832     NM_080676       MACROD2
6   chr20   14573638       14849832     NR_104193   MACROD2-IT1
7   chr21   23080208       23465681     NR_038872     LINC00317
8   chr21   23080208       23465681     NR_109958     LINC01425
9   chr21   23080208       23465681     NR_109959  LOC101927843
10   chr5   20375217       20507009  NM_001291956         CDH18,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  189926017      190071919  NM_001317188     BRINP3
2   chr10    7132881        7449548  NM_001018039     SFMBT2
4   chr10    7132881        7449548     NR_132972   SNORD129
5   chr14   21668893       21974957  NM_001163380      RAB2B
6   chr14   21668893       21974957  NM_001170629       CHD8
7   chr14   21668893       21974957  NM_001303523       TOX4
8   chr14   21668893       21974957     NM_007192    SUPT16H
9   chr14   21668893       21974957     NM_019852     METTL3
10  chr14   21668893       21974957     NM_020366    RPGRIP1
12  chr14   21668893       21974957     NM_031314     HNRNPC
14  chr14   21668893       21974957     NR_002916     SNORD8
15  chr14   21668893       21974957     NR_003029     SNORD9
16  chr14   21668893       21974957     NR_038970  LINC00641
18  chr16   68625427       69034530  NM_001317184       CDH1
19  chr16   68625427       69034530  NM_001317195       CDH3
20  chr16   68625427       69034530     NM_024562     TANGO6
21  chr16   68625427       69034530     NR_106988  MIR7641-2
22   chr3   80463534       81447921     NR_132411  LOC728290
23   chr5   20406162       20605978  NM_001291956      CDH18
24   chr9   41850591       41961697     NR_003670     FGF7P3
25   chr9   41850591       41961697     NR_015363      GLIDR,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   45527516       45660675  NM_001308120    FAM179B
1   chr14   45527516       45660675  NM_001308133      FANCM
3   chr14   45527516       45660675     NM_002013      FKBP3
4   chr14   45527516       45660675     NM_017922     PRPF39
5   chr14   45527516       45660675     NR_003691   SNORD127
6   chr16   18474183       18620435  NM_001004060      NOMO2
7   chr16   18474183       18620435     NR_003569    ABCC6P1
8   chr16   18474183       18620435     NR_036140  MIR3179-1
9   chr16   18474183       18620435     NR_036142  MIR3180-2
10  chr16   18474183       18620435     NR_036144  MIR3180-3
11  chr16   18474183       18620435     NR_037442  MIR3670-1
12   chr9  116373940      117075297  NM_001318041     ZNF618
13   chr9  116373940      117075297     NM_001633       AMBP
14   chr9  116373940      117075297     NM_032888    COL27A1
15   chr9  116373940      117075297     NM_138424      KIF12
16   chr9  116373940      117075297     NR_030255     MIR455,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   99989230      100205363  NM_001013660         FRRS1
1    chr1   99989230      100205363     NM_017734         PALMD
2    chr1   99989230      100205363     NR_037516     MIR548AA1
3   chr15   28754774       29486169  NM_001130414         APBA2
4   chr15   28754774       29486169  NM_001282468       GOLGA8M
5   chr15   28754774       29486169     NM_015307      FAM189A1
6   chr15   28754774       29486169     NR_026589       WHAMMP2
7   chr15   28754774       29486169     NR_033351       GOLGA8F
8   chr15   28754774       29486169     NR_033353       GOLGA8G
9   chr15   28754774       29486169     NR_036443       HERC2P9
10  chr15   28754774       29486169     NR_036475  LOC100289656
11  chr15   28754774       29486169     NR_037599     PDCD6IPP2
12  chr15   28754774       29486169     NR_047567     GOLGA6L7P
13  chr19   33752978       33905908     NM_000285          PEPD
14  chr19   33752978       33905908  NM_001252296         CEBPG
15  chr19   33752978       33905908  NM_001285829         CEBPA
17  chr19   33752978       33905908     NR_026887     CEBPA-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  132219257      132350270  NM_001012393         OPCML
3   chr16   18355379       18733234  NM_001004060         NOMO2
4   chr16   18355379       18733234  NM_001282511        NPIPA8
5   chr16   18355379       18733234     NR_003569       ABCC6P1
6   chr16   18355379       18733234     NR_036140     MIR3179-1
7   chr16   18355379       18733234     NR_036142     MIR3180-2
8   chr16   18355379       18733234     NR_036144     MIR3180-3
9   chr16   18355379       18733234     NR_037442     MIR3670-1
10  chr16   18355379       18733234     NR_103772  LOC100288162
11  chr16   18355379       18733234     NR_106971     MIR6511A4
12  chr16   18355379       18733234     NR_107060     MIR6770-2
13   chr5  117372973      117592197     NR_104997  LOC102467224
14   chr6  162635715      162839974     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81486207       81613197     NR_029407     LOC642361
1   chr10   81486207       81613197     NR_120611    NUTM2B-AS1
4   chr14   37625143       37752981  NM_001171170      SLC25A21
5   chr14   37625143       37752981  NM_001195296        MIPOL1
6   chr14   37625143       37752981     NR_033240  SLC25A21-AS1
7   chr15   30282972       30468823  NM_001282472       GOLGA8J
8   chr15   30282972       30468823     NR_026859        ULK4P3
9   chr15   30282972       30468823     NR_033933       GOLGA8T
10  chr16   21488340       22241693  NM_001077180        METTL9
11  chr16   21488340       22241693  NM_001161683          OTOA
12  chr16   21488340       22241693  NM_001164579      C16orf52
14  chr16   21488340       22241693  NM_001310148        NPIPB4
15  chr16   21488340       22241693     NM_003366        UQCRC2
16  chr16   21488340       22241693     NM_005849         IGSF6
17  chr16   21488340       22241693     NM_013302         EEF2K
20  chr16   21488340       22241693     NM_173615         VWA3A
21  chr16   21488340       22241693     NM_173806         PDZD9
22  chr16   21488340       22241693     NR_002594      SLC7A5P2
23  chr16   21488340       22241693     NR_003370        RRN3P1
24  chr16   21488340       22241693     NR_027155        SMG1P3
25  chr16   21488340       22241693     NR_049833     MIR3680-2
26  chr16   21488340       22241693     NR_110930  LOC101927814
27  chr20   14792504       14958880     NM_080676       MACROD2
28  chr20   14792504       14958880     NR_037841   MACROD2-AS1
30   chr4   68954317       69062761     NM_207407     TMPRSS11F
31   chr4   68954317       69062761     NR_015446        FTLP10
32   chr4   68954317       69062761     NR_104048   TMPRSS11BNL,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  108368308      108601682     NM_006113       VAV3
1   chr1  108368308      108601682     NR_046653   VAV3-AS1
2   chr1  108368308      108601682     NR_107006    MIR7852
3   chr1  143755216      144961296  NM_001002810    PDE4DIP
6   chr1  143755216      144961296  NM_001123068    PPIAL4G
7   chr1  143755216      144961296  NM_001135789    PPIAL4C
12  chr1  143755216      144961296  NM_001277444      NBPF9
13  chr1  143755216      144961296  NM_001278267     NBPF20
14  chr1  143755216      144961296  NM_001287385     FAM72C
15  chr1  143755216      144961296  NM_001345942     FAM72D
20  chr1  143755216      144961296     NR_003242     PFN1P2
21  chr1  143755216      144961296     NR_024511  LINC00623
23  chr1  143755216      144961296     NR_102405      NBPF8
24  chr1  143755216      144961296     NR_111953  LINC00869
26  chr1  215847000      216035180     NM_206933      USH2A
27  chr4   69306055       69531803     NM_001076    UGT2B15
28  chr4   69306055       69531803     NM_001077    UGT2B17
29  chr4   69306055       69531803     NM_014058  TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr19   47844114       48091071  NM_001009813        MEIS3
1   chr19   47844114       48091071  NM_001271749        C5AR2
3   chr19   47844114       48091071  NM_001277075       ZNF541
4   chr19   47844114       48091071  NM_001291296         KPTN
7   chr19   47844114       48091071     NM_014681        DHX34
8   chr19   47844114       48091071     NM_015063       SLC8A2
10  chr19   47844114       48091071     NR_038452     NAPA-AS1
11  chr19   47844114       48091071     NR_038457         NAPA
12  chr20   14518704       14644871     NM_080676      MACROD2
13  chr20   14518704       14644871     NR_104193  MACROD2-IT1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   38224923       38329871  NM_001310135          TTC6
1   chr16   21510654       21643020  NM_001077180        METTL9
3   chr16   21510654       21643020     NR_002594      SLC7A5P2
4   chr16   21510654       21643020     NR_027155        SMG1P3
5   chr16   21510654       21643020     NR_049833     MIR3680-2
6   chr16   21510654       21643020     NR_110930  LOC101927814
7   chr18   14701845       14925944  NM_001145029      ANKRD30B
8   chr18   14701845       14925944     NR_036153     MIR3156-2
9   chr22   17232080       17503031  NM_001037814          GAB4
10  chr22   17232080       17503031     NM_175878          XKR3
11  chr22   17232080       17503031     NR_003607       HSFY1P1
12   chr7   68686221       69122718  NM_001127231         AUTS2
14   chr7   68686221       69122718     NR_108105  LOC100507468,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   48449495       48598230  NM_001005512      OR4A47
1   chr13   80859334       80976027  NM_001318536       SPRY2
4   chr14   47770092       48179195  NM_001113498       MDGA2
7   chr17   21321764       21564553  NM_001113434    C17orf51
8   chr17   21321764       21564553     NM_021012      KCNJ12
9    chr2   35685668       35804294     NR_039629    MIR548AD
10   chr2   52196285       52314728     NR_135237   LOC730100
11   chr2   75914308       76016121  NM_001201334       GCFC2
14   chr5  119923307      120267914  NM_001300783       PRR16
17   chr8    7171006        7314613  NM_001081551    DEFB103A
18   chr8    7171006        7314613  NM_001164457     ZNF705G
19   chr8    7171006        7314613  NM_001205266      DEFB4B
20   chr8    7171006        7314613  NM_001256873     USP17L1
21   chr8    7171006        7314613  NM_001256874     USP17L4
22   chr8    7171006        7314613     NM_058200     SPAG11B
25   chr8    7171006        7314613     NR_003668  DEFB109P1B
26   chr8    7171006        7314613     NR_027423      FAM66B
27   chr9    2467422        2868556     NM_003383       VLDLR
28   chr9    2467422        2868556     NM_014878        PUM3
29   chr9    2467422        2868556     NM_133497       KCNV2
30   chr9    2467422        2868556     NR_015375   VLDLR-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21890187       21995276  NM_001163380         RAB2B
1   chr14   21890187       21995276  NM_001170629          CHD8
2   chr14   21890187       21995276  NM_001303523          TOX4
3   chr14   21890187       21995276     NM_019852        METTL3
6   chr14   21890187       21995276     NR_111966         SALL2
8   chr16   18242008       18416253  NM_001282511        NPIPA8
9    chr5  120478332      122066937  NM_001178102           LOX
10   chr5  120478332      122066937  NM_001195535  LOC100505841
13   chr5  120478332      122066937     NM_005460        SNCAIP
14   chr5  120478332      122066937     NM_152546        SRFBP1
15   chr5  120478332      122066937     NM_177478          FTMT
16   chr5  120478332      122066937     NM_207317        ZNF474
17   chr5  120478332      122066937     NR_051996      MGC32805
18   chr5  120478332      122066937     NR_104999  LOC102467226
19   chr5  120478332      122066937     NR_109881  LOC101927379
22   chr5  120478332      122066937     NR_134281  LOC101927357,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144672951      144814995  NM_001277444         NBPF9
1    chr1  144672951      144814995  NM_001278267        NBPF20
2    chr1  144672951      144814995     NR_102405         NBPF8
3   chr20   14779598       15069632     NM_080676       MACROD2
4   chr20   14779598       15069632     NR_037841   MACROD2-AS1
6    chr7   64127637       64449528  NM_001160183        ZNF138
7    chr7   64127637       64449528  NM_001282360        ZNF107
8    chr7   64127637       64449528     NM_015852        ZNF117
9    chr7   64127637       64449528     NM_021148        ZNF273
12   chr7   64127637       64449528     NR_106898       MIR6839
13   chr8   22962949       23308618  NM_001128930        ENTPD4
14   chr8   22962949       23308618  NM_001136108        R3HCC1
15   chr8   22962949       23308618  NM_001317899         CHMP7
16   chr8   22962949       23308618     NM_002318         LOXL2
17   chr8   22962949       23308618     NM_003840     TNFRSF10D
18   chr8   22962949       23308618     NM_003841     TNFRSF10C
19   chr8   22962949       23308618     NM_003844     TNFRSF10A
21   chr8   22962949       23308618     NR_033928     LOC389641
22   chr8   22962949       23308618     NR_038323  LOC100507156,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145295920      145512374  NM_001039888      ANKRD34A
1    chr1  145295920      145512374  NM_001277444         NBPF9
2    chr1  145295920      145512374  NM_001278267        NBPF20
3    chr1  145295920      145512374  NM_001302371        NBPF10
4    chr1  145295920      145512374  NM_001313972         TXNIP
5    chr1  145295920      145512374     NM_005105         RBM8A
7    chr1  145295920      145512374     NM_032305       POLR3GL
8    chr1  145295920      145512374     NM_145277          HFE2
9    chr1  145295920      145512374     NM_153713         LIX1L
10   chr1  145295920      145512374     NR_002328        GNRHR2
12   chr1  145295920      145512374     NR_104217       NBPF25P
13   chr1  145295920      145512374     NR_125967  LOC101928979
14  chr10   53138760       53301131  NM_001098512         PRKG1
16  chr14   19859604       19993752  NM_001145442         POTEM
17  chr14   19859604       19993752     NR_073459       BMS1P18
18  chr14   19859604       19993752     NR_110526       DUXAP10
19  chr14   19859604       19993752     NR_122111     LINC01296
21  chr14   19859604       19993752     NR_133911       BMS1P22
22  chr15   28201085       29169533     NM_000275          OCA2
23  chr15   28201085       29169533  NM_001282468       GOLGA8M
25  chr15   28201085       29169533     NM_004667         HERC2
26  chr15   28201085       29169533     NR_026589       WHAMMP2
27  chr15   28201085       29169533     NR_033351       GOLGA8F
29  chr15   28201085       29169533     NR_033353       GOLGA8G
31  chr15   28201085       29169533     NR_036443       HERC2P9
32  chr15   28201085       29169533     NR_036475  LOC100289656
33  chr15   28201085       29169533     NR_037599     PDCD6IPP2
34  chr15   28201085       29169533     NR_039734     MIR4509-3
36  chr15   28201085       29169533     NR_047567     GOLGA6L7P
37   chr2  131945033      132456246  NM_001077637        WTH3DI
38   chr2  131945033      132456246  NM_001083538         POTEE
39   chr2  131945033      132456246  NM_001085365         MZT2A
40   chr2  131945033      132456246  NM_001258304       CCDC74A
41   chr2  131945033      132456246     NM_080386        TUBA3D
42   chr2  131945033      132456246     NR_002826       NOC2LP2
43   chr2  131945033      132456246     NR_026922     LOC150776
44   chr2  131945033      132456246     NR_030728     LOC440910
45   chr2  131945033      132456246     NR_033885        POTEKP
46   chr2  131945033      132456246     NR_036499     LINC01120
47   chr2  131945033      132456246     NR_039945       MIR4784
48   chr2  131945033      132456246     NR_108087     LINC01087
49   chr4   68952078       69144565     NM_182502     TMPRSS11B
50   chr4   68952078       69144565     NM_207407     TMPRSS11F
51   chr4   68952078       69144565     NR_015446        FTLP10
52   chr4   68952078       69144565     NR_104048   TMPRSS11BNL
53   chr7   64009290       64120969  NM_001130022        ZNF680
55   chr7   64009290       64120969     NR_033245     LOC641746
56   chr7   64009290       64120969     NR_077227  LOC100128885,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   19625333       20585916     NM_000921         PDE3A
1   chr12   19625333       20585916  NM_001267043         AEBP2
3   chr12   19625333       20585916     NR_040098  LOC100506393
4   chr16   16393660       16500101  NM_001282511        NPIPA8
5   chr16   16393660       16500101     NR_036140     MIR3179-1
6   chr16   16393660       16500101     NR_036141     MIR3180-1
7   chr16   16393660       16500101     NR_036142     MIR3180-2
8   chr16   16393660       16500101     NR_036447        PKD1P1
9   chr16   16393660       16500101     NR_103772  LOC100288162
10  chr16   16393660       16500101     NR_106766     MIR6511A1
11  chr16   16393660       16500101     NR_106971     MIR6511A4
12  chr16   16393660       16500101     NR_107060     MIR6770-2
13  chr16   16393660       16500101     NR_128713     MIR3670-4
14  chr19   47795014       47921601  NM_001009813         MEIS3
15  chr19   47795014       47921601  NM_001271749         C5AR2
19  chr19   47795014       47921601     NM_001736         C5AR1
20  chr19   47795014       47921601     NM_014681         DHX34
22   chr2   95452940       95674472     NM_144705         TEKT4
23   chr2   95452940       95674472     NR_003366    ANKRD20A8P
24   chr2   95452940       95674472     NR_037597     LOC442028
25  chr20   25399724       25529459  NM_001318226          NINL
26  chr20   25399724       25529459     NM_021067         GINS1
27   chr3     770922        1109659     NR_110118     LINC01266,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67971447       68323228  NM_001127384    CTNNA3
2   chr14   21725778       21930784  NM_001163380     RAB2B
3   chr14   21725778       21930784  NM_001170629      CHD8
4   chr14   21725778       21930784     NM_007192   SUPT16H
5   chr14   21725778       21930784     NM_020366   RPGRIP1
7   chr14   21725778       21930784     NM_031314    HNRNPC
9   chr14   21725778       21930784     NR_002916    SNORD8
10  chr14   21725778       21930784     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  130207107      130673367     NM_007197         FZD10
1   chr12  130207107      130673367     NM_133448      TMEM132D
2   chr12  130207107      130673367     NR_024457  LOC100190940
3   chr12  130207107      130673367     NR_033834     FZD10-AS1
4   chr14   21824345       22087205  NM_001005465        OR10G3
5   chr14   21824345       22087205  NM_001163380         RAB2B
6   chr14   21824345       22087205  NM_001170629          CHD8
7   chr14   21824345       22087205  NM_001303523          TOX4
8   chr14   21824345       22087205     NM_007192       SUPT16H
9   chr14   21824345       22087205     NM_019852        METTL3
12  chr14   21824345       22087205     NR_002916        SNORD8
13  chr14   21824345       22087205     NR_003029        SNORD9
14  chr14   21824345       22087205     NR_111966         SALL2
16   chr2   51229142       51343054  NM_001330079         NRXN1
19   chr2   51229142       51343054     NR_135237     LOC730100
20   chr3    1708485        2177796     NM_175607         CNTN4
21   chr3    1708485        2177796     NR_046555     CNTN4-AS2
22   chr7    5565817        5692759     NM_001101          ACTB
23   chr7    5565817        5692759     NM_003088         FSCN1
24   chr7    5565817        5692759     NM_207116        RNF216
25   chr9   22414469       22558839     NM_022160        DMRTA1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21753455       22075346  NM_001005465     OR10G3
1   chr14   21753455       22075346  NM_001163380      RAB2B
2   chr14   21753455       22075346  NM_001170629       CHD8
3   chr14   21753455       22075346  NM_001303523       TOX4
4   chr14   21753455       22075346     NM_007192    SUPT16H
5   chr14   21753455       22075346     NM_019852     METTL3
6   chr14   21753455       22075346     NM_020366    RPGRIP1
9   chr14   21753455       22075346     NR_002916     SNORD8
10  chr14   21753455       22075346     NR_003029     SNORD9
11  chr14   21753455       22075346     NR_111966      SALL2
13  chr15   28719616       28884203     NR_033351    GOLGA8F
14  chr15   28719616       28884203     NR_033353    GOLGA8G
15  chr15   28719616       28884203     NR_039734  MIR4509-3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145259917      145530868  NM_001039888      ANKRD34A
1    chr1  145259917      145530868  NM_001184795        PEX11B
2    chr1  145259917      145530868  NM_001277444         NBPF9
3    chr1  145259917      145530868  NM_001278267        NBPF20
4    chr1  145259917      145530868  NM_001302371        NBPF10
5    chr1  145259917      145530868  NM_001303040        ITGA10
6    chr1  145259917      145530868  NM_001313972         TXNIP
8    chr1  145259917      145530868     NM_005105         RBM8A
10   chr1  145259917      145530868     NM_032305       POLR3GL
11   chr1  145259917      145530868     NM_145277          HFE2
12   chr1  145259917      145530868     NM_153713         LIX1L
13   chr1  145259917      145530868     NM_203458      NOTCH2NL
14   chr1  145259917      145530868     NR_002328        GNRHR2
18   chr1  145259917      145530868     NR_104217       NBPF25P
19   chr1  145259917      145530868     NR_125967  LOC101928979
20  chr11   48292700       48537087  NM_001004702         OR4C3
21  chr11   48292700       48537087  NM_001004725         OR4S1
22  chr11   48292700       48537087  NM_001005512        OR4A47
23  chr11   48292700       48537087  NM_001005513        OR4C45
24  chr11   55829457       55932392  NM_001003750         OR8I2
25  chr11   55829457       55932392  NM_001004058         OR8K5
26  chr11   55829457       55932392  NM_001004064         OR8J3
27  chr11   55829457       55932392  NM_001005200         OR8H2
28  chr11   55829457       55932392  NM_001005201         OR8H3
29  chr11   79100675       79948619  NM_001098816         TENM4
30  chr11   79100675       79948619     NR_030598        MIR708
31  chr11   79100675       79948619     NR_049841       MIR5579
32  chr14   21910450       22247540  NM_001001912         OR4E2
33  chr14   21910450       22247540  NM_001005465        OR10G3
34  chr14   21910450       22247540  NM_001005466        OR10G2
35  chr14   21910450       22247540  NM_001163380         RAB2B
36  chr14   21910450       22247540  NM_001303523          TOX4
37  chr14   21910450       22247540  NM_001317107         OR4E1
38  chr14   21910450       22247540     NM_019852        METTL3
40  chr14   21910450       22247540     NR_111966         SALL2
42  chr16   21837901       21964099  NM_001310148        NPIPB4
43   chr6    1866985        2236244  NM_001253846          GMDS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21580289       21993405  NM_001004731        OR5AU1
1   chr14   21580289       21993405  NM_001163380         RAB2B
2   chr14   21580289       21993405  NM_001170629          CHD8
3   chr14   21580289       21993405  NM_001303523          TOX4
4   chr14   21580289       21993405     NM_007192       SUPT16H
5   chr14   21580289       21993405     NM_019852        METTL3
6   chr14   21580289       21993405     NM_020366       RPGRIP1
8   chr14   21580289       21993405     NM_031314        HNRNPC
10  chr14   21580289       21993405     NR_002916        SNORD8
11  chr14   21580289       21993405     NR_003029        SNORD9
12  chr14   21580289       21993405     NR_038970     LINC00641
14  chr14   21580289       21993405     NR_111966         SALL2
16  chr20   14764109       15013106     NM_080676       MACROD2
17  chr20   14764109       15013106     NR_037841   MACROD2-AS1
19   chr4  169232419      169718828  NM_001012967        DDX60L
20   chr4  169232419      169718828  NM_001166108         PALLD
23   chr4  169232419      169718828     NM_017631         DDX60
24   chr7  133197326      133503442     NM_021807         EXOC4
25   chr7  133197326      133503442     NR_120513  LOC101928861,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  102414331      103126933     NR_110211      OLFM3
1   chr11    7615115        7954599  NM_001004461     OR10A6
2   chr11    7615115        7954599  NM_001256568    PPFIBP2
4   chr11    7615115        7954599  NM_001302826     CYB5R2
8   chr11    7615115        7954599     NM_153444      OR5P2
9   chr11    7615115        7954599     NM_153445      OR5P3
10  chr11    7615115        7954599     NM_198185      OVCH2
11  chr11    7615115        7954599     NR_027711     OR5E1P
12  chr11    7615115        7954599     NR_036678  LOC283299
13  chr12   41724930       42034319  NM_001164595     PDZRN4
15  chr14   21922551       22051734  NM_001005465     OR10G3
16  chr14   21922551       22051734  NM_001163380      RAB2B
17  chr14   21922551       22051734  NM_001303523       TOX4
18  chr14   21922551       22051734     NM_019852     METTL3
20  chr14   21922551       22051734     NR_111966      SALL2
22   chr7   71440874       71711870  NM_001017440      CALN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21893872       22024130  NM_001163380         RAB2B
1   chr14   21893872       22024130  NM_001170629          CHD8
2   chr14   21893872       22024130  NM_001303523          TOX4
3   chr14   21893872       22024130     NM_019852        METTL3
6   chr14   21893872       22024130     NR_111966         SALL2
8    chr7   63883970       64092894  NM_001130022        ZNF680
10   chr7   63883970       64092894     NR_029404       YWHAEP1
11   chr7   63883970       64092894     NR_033245     LOC641746
12   chr7   63883970       64092894     NR_077227  LOC100128885,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81450120       81644015  NM_001278495        NUTM2B
1   chr10   81450120       81644015     NR_029407     LOC642361
2   chr10   81450120       81644015     NR_120611    NUTM2B-AS1
5   chr22   17230562       17709761  NM_001037814          GAB4
6   chr22   17230562       17709761  NM_001163079         CECR6
7   chr22   17230562       17709761  NM_001282227         CECR1
9   chr22   17230562       17709761  NM_001289905        IL17RA
10  chr22   17230562       17709761     NM_017829         CECR5
13  chr22   17230562       17709761     NM_175878          XKR3
15  chr22   17230562       17709761     NR_003607       HSFY1P1
16  chr22   17230562       17709761     NR_015352         CECR7
17  chr22   17230562       17709761     NR_024482     CECR5-AS1
18  chr22   17230562       17709761     NR_103793  LOC100996342
19   chr5  104116473      105406136     NR_000039       RAB9BP1
20   chr5  120018001      120272241  NM_001300783         PRR16
23   chr9     457821         767669  NM_001190458         DOCK8
24   chr9     457821         767669  NM_001256876         KANK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244964076      245270140  NM_001143943        EFCAB2
2    chr1  244964076      245270140  NM_001312871         COX20
4    chr1  244964076      245270140     NM_004501        HNRNPU
7    chr1  244964076      245270140     NR_111907  LOC101928068
8    chr1  244964076      245270140     NR_132782      SNORA100
9   chr14   21833201       22010918  NM_001163380         RAB2B
10  chr14   21833201       22010918  NM_001170629          CHD8
11  chr14   21833201       22010918  NM_001303523          TOX4
12  chr14   21833201       22010918     NM_007192       SUPT16H
13  chr14   21833201       22010918     NM_019852        METTL3
16  chr14   21833201       22010918     NR_002916        SNORD8
17  chr14   21833201       22010918     NR_003029        SNORD9
18  chr14   21833201       22010918     NR_111966         SALL2
20  chr20   14884974       15338947  NM_001033087       MACROD2
22  chr20   14884974       15338947     NR_037841   MACROD2-AS1
24   chr7   62974699       63158210     NR_036246     MIR4283-1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   81822374       81937969     NR_120571     MIR4300HG
1   chr15   28691208       29100073  NM_001282468       GOLGA8M
2   chr15   28691208       29100073     NR_026589       WHAMMP2
3   chr15   28691208       29100073     NR_033351       GOLGA8F
4   chr15   28691208       29100073     NR_033353       GOLGA8G
5   chr15   28691208       29100073     NR_036443       HERC2P9
6   chr15   28691208       29100073     NR_036475  LOC100289656
7   chr15   28691208       29100073     NR_037599     PDCD6IPP2
8   chr15   28691208       29100073     NR_039734     MIR4509-3
9   chr15   28691208       29100073     NR_047567     GOLGA6L7P
10  chr18   67055099       67172580     NM_152721          DOK6
11  chr18   67055099       67172580     NR_134579  LOC105372179
12  chr20    5142998        5266945     NM_003818          CDS2
13   chr5  120000473      120147485  NM_001300783         PRR16,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143716806      143821257  NM_001123068       PPIAL4G
1    chr1  143716806      143821257     NR_104014     LINC01138
2    chr1  143716806      143821257     NR_111930  LOC100132057
3   chr15   21146421       21294801     NR_040094     LINC01193
4   chr20   14493216       15001878     NM_080676       MACROD2
5   chr20   14493216       15001878     NR_037841   MACROD2-AS1
7   chr20   14493216       15001878     NR_104193   MACROD2-IT1
8    chr3  111640918      111759009  NM_001008273        TAGLN3
9    chr3  111640918      111759009  NM_001134437        PHLDB2
11   chr3  111640918      111759009  NM_001272069        ABHD10
14   chr3  111640918      111759009     NR_026734       TMPRSS7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   89000767       89110002     NR_024397    NUTM2A-AS1
1   chr10   89000767       89110002     NR_029408     LINC00863
3   chr14   19863415       20134411  NM_001145442         POTEM
4   chr14   19863415       20134411     NR_073459       BMS1P18
5   chr14   19863415       20134411     NR_110505  LOC100508046
6   chr14   19863415       20134411     NR_110526       DUXAP10
7   chr14   19863415       20134411     NR_122111     LINC01296
9   chr14   19863415       20134411     NR_133911       BMS1P22
10  chr14   21771896       22273428  NM_001001912         OR4E2
11  chr14   21771896       22273428  NM_001005465        OR10G3
12  chr14   21771896       22273428  NM_001005466        OR10G2
13  chr14   21771896       22273428  NM_001163380         RAB2B
14  chr14   21771896       22273428  NM_001170629          CHD8
15  chr14   21771896       22273428  NM_001303523          TOX4
16  chr14   21771896       22273428  NM_001317107         OR4E1
17  chr14   21771896       22273428     NM_007192       SUPT16H
18  chr14   21771896       22273428     NM_019852        METTL3
19  chr14   21771896       22273428     NM_020366       RPGRIP1
22  chr14   21771896       22273428     NR_002916        SNORD8
23  chr14   21771896       22273428     NR_003029        SNORD9
24  chr14   21771896       22273428     NR_111966         SALL2
26   chr2  110180682      110296480  NM_001099289        SH3RF3
27   chr2  110179927      110281947  NM_001099289        SH3RF3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102377295      102625473     NR_110211         OLFM3
1    chr1  143121055      144429014  NM_001123068       PPIAL4G
2    chr1  143121055      144429014  NM_001135789       PPIAL4C
3    chr1  143121055      144429014  NM_001278267        NBPF20
4    chr1  143121055      144429014  NM_001287385        FAM72C
5    chr1  143121055      144429014  NM_001345942        FAM72D
9    chr1  143121055      144429014     NR_024511     LINC00623
11   chr1  143121055      144429014     NR_104014     LINC01138
12   chr1  143121055      144429014     NR_106967       MIR6077
13   chr1  143121055      144429014     NR_110761  LOC102723769
14   chr1  143121055      144429014     NR_111930  LOC100132057
15   chr1  143121055      144429014     NR_111953     LINC00869
17   chr1  244993376      245150387  NM_001143943        EFCAB2
19   chr1  244993376      245150387  NM_001312871         COX20
21   chr1  244993376      245150387     NM_004501        HNRNPU
24   chr1  244993376      245150387     NR_111907  LOC101928068
25   chr1  244993376      245150387     NR_132782      SNORA100
26  chr13   54074963       54616008     NR_047488     LINC00558
27  chr15   28216018       28345588     NM_000275          OCA2
29  chr22   32459471       32669884     NM_000343        SLC5A1
30  chr22   32459471       32669884  NM_001010859      C22orf42
31  chr22   32459471       32669884  NM_001098527         RFPL2
36  chr22   32459471       32669884     NM_014227        SLC5A4
37  chr22   32459471       32669884     NR_040114       AP1B1P1
38   chr3  176606306      176919670  NM_001321193       TBL1XR1
40   chr9   28471443       28765519  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   73450496       73807488     NR_110676  LINC01360
2   chr14   21774618       21936041  NM_001163380      RAB2B
3   chr14   21774618       21936041  NM_001170629       CHD8
4   chr14   21774618       21936041     NM_007192    SUPT16H
5   chr14   21774618       21936041     NM_020366    RPGRIP1
8   chr14   21774618       21936041     NR_002916     SNORD8
9   chr14   21774618       21936041     NR_003029     SNORD9
10   chr2  202137579      202265760     NM_015049      TRAK2
11   chr2  202137579      202265760     NM_033355      CASP8
14   chr2  202137579      202265760     NR_110620   ALS2CR12
16   chr3   28935587       29529991  NM_001003792      RBMS3
18   chr3   28935587       29529991     NR_109804  RBMS3-AS3
19   chr3  176627885      176912428  NM_001321193    TBL1XR1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21874545       22121078  NM_001005465        OR10G3
1   chr14   21874545       22121078  NM_001005466        OR10G2
2   chr14   21874545       22121078  NM_001163380         RAB2B
3   chr14   21874545       22121078  NM_001170629          CHD8
4   chr14   21874545       22121078  NM_001303523          TOX4
5   chr14   21874545       22121078     NM_019852        METTL3
8   chr14   21874545       22121078     NR_111966         SALL2
10  chr22   17253444       17366896     NM_175878          XKR3
11  chr22   17253444       17366896     NR_003607       HSFY1P1
12   chr9    5950944        6118923  NM_001017969      KIAA2026
13   chr9    5950944        6118923  NM_001243202        RANBP6
14   chr9    5950944        6118923     NR_039811       MIR4665
15   chr9   67105288       67316700     NR_002817        AQP7P1
16   chr9   67105288       67316700     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21868359       22225713  NM_001001912         OR4E2
1   chr14   21868359       22225713  NM_001005465        OR10G3
2   chr14   21868359       22225713  NM_001005466        OR10G2
3   chr14   21868359       22225713  NM_001163380         RAB2B
4   chr14   21868359       22225713  NM_001170629          CHD8
5   chr14   21868359       22225713  NM_001303523          TOX4
6   chr14   21868359       22225713  NM_001317107         OR4E1
7   chr14   21868359       22225713     NM_019852        METTL3
10  chr14   21868359       22225713     NR_111966         SALL2
12  chr15   28659480       29505410  NM_001130414         APBA2
13  chr15   28659480       29505410  NM_001282468       GOLGA8M
14  chr15   28659480       29505410     NM_015307      FAM189A1
15  chr15   28659480       29505410     NR_026589       WHAMMP2
16  chr15   28659480       29505410     NR_033351       GOLGA8F
17  chr15   28659480       29505410     NR_033353       GOLGA8G
18  chr15   28659480       29505410     NR_036443       HERC2P9
19  chr15   28659480       29505410     NR_036475  LOC100289656
20  chr15   28659480       29505410     NR_037599     PDCD6IPP2
21  chr15   28659480       29505410     NR_039734     MIR4509-3
23  chr15   28659480       29505410     NR_047567     GOLGA6L7P
24   chr7   79066928       79270219     NM_012301         MAGI2
25   chr7   79066928       79270219     NR_038343     MAGI2-AS3
28   chr7  110513241      110627037  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102449627      102624351     NR_110211         OLFM3
1   chr15   28700264       28802117     NR_033351       GOLGA8F
2   chr15   28700264       28802117     NR_033353       GOLGA8G
3   chr15   28700264       28802117     NR_039734     MIR4509-3
4   chr22   17221009       19099925  NM_001037814          GAB4
5   chr22   17221009       19099925  NM_001122731        MICAL3
6   chr22   17221009       19099925  NM_001127649         PEX26
8   chr22   17221009       19099925  NM_001163079         CECR6
9   chr22   17221009       19099925  NM_001184781         DGCR2
10  chr22   17221009       19099925  NM_001193414         TUBA8
11  chr22   17221009       19099925  NM_001195226         PRODH
13  chr22   17221009       19099925  NM_001244567           BID
16  chr22   17221009       19099925  NM_001270733       BCL2L13
17  chr22   17221009       19099925  NM_001282227         CECR1
19  chr22   17221009       19099925  NM_001288707  LOC101929372
20  chr22   17221009       19099925  NM_001289905        IL17RA
21  chr22   17221009       19099925  NM_001290046         CECR2
23  chr22   17221009       19099925  NM_001303484      SLC25A18
24  chr22   17221009       19099925     NM_001696      ATP6V1E1
25  chr22   17221009       19099925     NM_005675         DGCR6
29  chr22   17221009       19099925     NM_017414         USP18
30  chr22   17221009       19099925     NM_017829         CECR5
33  chr22   17221009       19099925     NM_175878          XKR3
35  chr22   17221009       19099925     NR_002733         DGCR5
36  chr22   17221009       19099925     NR_003267         GGT3P
37  chr22   17221009       19099925     NR_003607       HSFY1P1
38  chr22   17221009       19099925     NR_015352         CECR7
39  chr22   17221009       19099925     NR_024157        DGCR11
40  chr22   17221009       19099925     NR_024159         DGCR9
41  chr22   17221009       19099925     NR_024417      FLJ41941
42  chr22   17221009       19099925     NR_024482     CECR5-AS1
43  chr22   17221009       19099925     NR_026651        DGCR10
44  chr22   17221009       19099925     NR_030378        MIR648
45  chr22   17221009       19099925     NR_036168     MIR3198-1
46  chr22   17221009       19099925     NR_038398         CECR3
48  chr22   17221009       19099925     NR_103718     LINC00528
49  chr22   17221009       19099925     NR_103793  LOC100996342
51  chr22   17221009       19099925     NR_134584  LOC101929350
52  chr22   17221009       19099925     NR_135922  LOC102725072
53  chr22   17221009       19099925     NR_136561     LOC642643
54  chr22   17221009       19099925     NR_136570  LOC100996415
55  chr22   17221009       19099925     NR_136571  LOC100996432
56  chr22   17221009       19099925     NR_136574  LOC105379550
57   chr4   93254144       93358595     NM_001510         GRID2
58   chr7  110733278      110900729  NM_001099658         LRRN3
59   chr7  110733278      110900729  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13  113504843      113756396  NM_001112732         MCF2L
4   chr13  113504843      113756396     NM_015205        ATP11A
5   chr13  113504843      113756396     NR_034002     MCF2L-AS1
6   chr15   28447644       28559022     NM_004667         HERC2
7   chr20   14799288       14941266     NM_080676       MACROD2
8   chr20   14799288       14941266     NR_037841   MACROD2-AS1
10  chr22   17251149       18135986  NM_001037814          GAB4
11  chr22   17251149       18135986  NM_001163079         CECR6
12  chr22   17251149       18135986  NM_001282227         CECR1
14  chr22   17251149       18135986  NM_001288707  LOC101929372
15  chr22   17251149       18135986  NM_001289905        IL17RA
16  chr22   17251149       18135986  NM_001290046         CECR2
18  chr22   17251149       18135986  NM_001303484      SLC25A18
19  chr22   17251149       18135986     NM_001696      ATP6V1E1
20  chr22   17251149       18135986     NM_015367       BCL2L13
21  chr22   17251149       18135986     NM_017829         CECR5
24  chr22   17251149       18135986     NM_175878          XKR3
26  chr22   17251149       18135986     NR_003607       HSFY1P1
27  chr22   17251149       18135986     NR_015352         CECR7
28  chr22   17251149       18135986     NR_024482     CECR5-AS1
29  chr22   17251149       18135986     NR_038398         CECR3
30  chr22   17251149       18135986     NR_103793  LOC100996342
31   chr5  152206041      152364741     NR_109877     LINC01470,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152443138      152563427     NM_019060         CRCT1
1    chr1  152443138      152563427     NM_032563         LCE3D
2    chr1  152443138      152563427     NM_178435         LCE3E
3    chr1  152443138      152563427     NM_178438         LCE5A
4    chr1  237546031      237649580     NM_001035          RYR2
5    chr1  237546031      237649580     NR_039626       MIR4428
6   chr15   28730968       29190750  NM_001282468       GOLGA8M
7   chr15   28730968       29190750     NR_026589       WHAMMP2
8   chr15   28730968       29190750     NR_033351       GOLGA8F
9   chr15   28730968       29190750     NR_033353       GOLGA8G
10  chr15   28730968       29190750     NR_036443       HERC2P9
11  chr15   28730968       29190750     NR_036475  LOC100289656
12  chr15   28730968       29190750     NR_037599     PDCD6IPP2
13  chr15   28730968       29190750     NR_039734     MIR4509-3
14  chr15   28730968       29190750     NR_047567     GOLGA6L7P
15  chr19   47855235       48509838     NM_000554           CRX
16  chr19   47855235       48509838  NM_001009813         MEIS3
17  chr19   47855235       48509838  NM_001128326         BSPH1
18  chr19   47855235       48509838  NM_001277075        ZNF541
19  chr19   47855235       48509838  NM_001291296          KPTN
22  chr19   47855235       48509838     NM_003009       SELENOW
23  chr19   47855235       48509838     NM_003167       SULT2A1
24  chr19   47855235       48509838     NM_014601          EHD2
25  chr19   47855235       48509838     NM_014681         DHX34
26  chr19   47855235       48509838     NM_015063        SLC8A2
27  chr19   47855235       48509838     NM_015710       GLTSCR2
28  chr19   47855235       48509838     NM_015711       GLTSCR1
29  chr19   47855235       48509838     NM_022142       ELSPBP1
30  chr19   47855235       48509838     NM_198479         TPRX1
31  chr19   47855235       48509838     NR_003048       SNORD23
32  chr19   47855235       48509838     NR_004435       SNAR-A1
34  chr19   47855235       48509838     NR_004437      SNAR-A12
36  chr19   47855235       48509838     NR_024214       SNAR-A3
37  chr19   47855235       48509838     NR_024217       SNAR-C2
40  chr19   47855235       48509838     NR_024218       SNAR-C4
41  chr19   47855235       48509838     NR_024221       SNAR-C3
42  chr19   47855235       48509838     NR_038452      NAPA-AS1
43  chr19   47855235       48509838     NR_038457          NAPA
44  chr19   47855235       48509838     NR_132382   GLTSCR2-AS1
45   chr4   69242562       69417986     NM_001077       UGT2B17
46   chr4   69242562       69417986     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241721944      241824776     NM_001821          CHML
1    chr1  241721944      241824776     NM_003679           KMO
2    chr1  241721944      241824776     NM_014322          OPN3
3    chr1  241721944      241824776     NM_144625         WDR64
4   chr15   82782615       82921543  NM_001164465     GOLGA6L10
5   chr15   82782615       82921543  NM_001291420      GOLGA6L9
6   chr15   82782615       82921543     NR_026811     GOLGA2P10
7   chr15   82782615       82921543     NR_045529     ADAMTS7P1
8   chr15   82782615       82921543     NR_111943         RPS17
10  chr15   82782615       82921543     NR_111962    GOLGA6L17P
11   chr2  110156692      110413153  NM_001099289        SH3RF3
12   chr2  110156692      110413153  NM_001321504        SEPT10
14   chr2  110156692      110413153     NM_023016        SOWAHC
15  chr22   17236701       17609275  NM_001037814          GAB4
16  chr22   17236701       17609275  NM_001163079         CECR6
17  chr22   17236701       17609275  NM_001289905        IL17RA
19  chr22   17236701       17609275     NM_175878          XKR3
20  chr22   17236701       17609275     NR_003607       HSFY1P1
21  chr22   17236701       17609275     NR_015352         CECR7
22  chr22   17236701       17609275     NR_103793  LOC100996342
23   chr5   99709700      100168007     NM_005668       ST8SIA4
24   chr5   99709700      100168007     NM_198507       FAM174A
25   chr5   99709700      100168007     NR_027503  LOC100133050
26   chr5   99709700      100168007     NR_031686       MIR548P
27   chr9   12075098       12746627     NM_000550         TYRP1
28   chr9   12075098       12746627     NR_125775   LURAP1L-AS1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21754359       21875893  NM_001170629         CHD8
1   chr14   21754359       21875893     NM_007192      SUPT16H
2   chr14   21754359       21875893     NM_020366      RPGRIP1
4   chr14   21754359       21875893     NR_002916       SNORD8
5   chr14   21754359       21875893     NR_003029       SNORD9
6   chr20   14705618       14897996     NM_080676      MACROD2
7   chr20   14705618       14897996     NR_037841  MACROD2-AS1
9    chr3  156018167      156122768  NM_001308217       KCNAB1
14   chr7   64113462       64260369  NM_001160183       ZNF138
15   chr7   64113462       64260369  NM_001282360       ZNF107
18   chr7   64113462       64260369     NR_106898      MIR6839
19   chr7   75891142       76152568  NM_001102594         DTX2
21   chr7   75891142       76152568  NM_001110199        SRRM3
22   chr7   75891142       76152568  NM_001110354          ZP3
23   chr7   75891142       76152568     NM_001540        HSPB1
25   chr7   75891142       76152568     NM_012479        YWHAG
26   chr7   75891142       76152568     NM_030570        UPK3B
27   chr7   75891142       76152568     NM_080744        SSC4D
28   chr7   75891142       76152568     NR_003262       FDPSP2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67320289       67566735     NM_000695   ALDH3B2
1   chr11   67320289       67566735     NM_000852     GSTP1
3   chr11   67320289       67566735  NM_001166102    NDUFV1
4   chr11   67320289       67566735  NM_001243750     NUDT8
5   chr11   67320289       67566735     NM_005995     TBX10
6   chr11   67320289       67566735     NM_080658      ACY3
8   chr11   67320289       67566735     NR_024249  FAM86C2P
9   chr11   67320289       67566735     NR_033791    DOC2GP
10  chr11   67320289       67566735     NR_130935  C11orf72
11  chr14   26949985       27056426     NM_002515     NOVA1
13   chr2   52872262       53012327     NR_039630   MIR4431
14   chr7    9377181       10110021     NR_002790      PER4,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   67988686       68141559  NM_001127384        CTNNA3
2  chr17   64581101       64700812     NM_002737         PRKCA
3   chr2  186494300      186746631     NM_173651         FSIP2
4   chr2  186494300      186746631     NR_110214  LOC101927196
7   chr2  186494300      186746631     NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21927772       22065536  NM_001005465     OR10G3
1   chr14   21927772       22065536  NM_001163380      RAB2B
2   chr14   21927772       22065536  NM_001303523       TOX4
3   chr14   21927772       22065536     NM_019852     METTL3
5   chr14   21927772       22065536     NR_111966      SALL2
7   chr16    6476970        6577911  NM_001308117     RBFOX1
9    chr2   52215093       52521281     NR_135237  LOC730100
10   chr4   69254302       69460622     NM_001077    UGT2B17
11   chr4   69254302       69460622     NM_014058  TMPRSS11E
12   chr4   94091884       94427057     NM_001510      GRID2
13   chr5   93371139       93475768  NM_001163418    FAM172A
14   chr7  110768728      110932777  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245058058      245189026  NM_001143943        EFCAB2
3    chr1  245058058      245189026     NR_111907  LOC101928068
4   chr11   89124041       89366830  NM_001143837          NOX4
10  chr14   21816190       21967644  NM_001163380         RAB2B
11  chr14   21816190       21967644  NM_001170629          CHD8
12  chr14   21816190       21967644  NM_001303523          TOX4
13  chr14   21816190       21967644     NM_007192       SUPT16H
14  chr14   21816190       21967644     NM_019852        METTL3
15  chr14   21816190       21967644     NM_020366       RPGRIP1
18  chr14   21816190       21967644     NR_002916        SNORD8
19  chr14   21816190       21967644     NR_003029        SNORD9
20  chr14   80020666       81683809     NM_000369          TSHR
21  chr14   80020666       81683809     NM_000793          DIO2
24  chr14   80020666       81683809  NM_001272020         NRXN3
25  chr14   80020666       81683809  NM_001278940        GTF2A1
28  chr14   80020666       81683809     NM_152446        CEP128
30  chr14   80020666       81683809     NR_003021       SNORA79
31  chr14   80020666       81683809     NR_038355      DIO2-AS1
33  chr15   58894300       59004432     NM_001110        ADAM10
34  chr15   58894300       59004432     NR_073415     HSP90AB4P
35  chr16   76809755       76920605     NR_039870       MIR4719,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11    4825007        5034472  NM_001004748    OR51A2
1   chr11    4825007        5034472  NM_001004749    OR51A7
2   chr11    4825007        5034472  NM_001004753    OR51F2
3   chr11    4825007        5034472  NM_001004755    OR51L1
4   chr11    4825007        5034472  NM_001004758    OR51S1
5   chr11    4825007        5034472  NM_001004759    OR51T1
6   chr11    4825007        5034472  NM_001005177    OR52R1
7   chr11    4825007        5034472  NM_001005237    OR51G1
8   chr11    4825007        5034472  NM_001005238    OR51G2
9   chr11    4825007        5034472  NM_001005329    OR51A4
10  chr11    4825007        5034472     NM_021801     MMP26
11  chr14   21810166       21998602  NM_001163380     RAB2B
12  chr14   21810166       21998602  NM_001170629      CHD8
13  chr14   21810166       21998602  NM_001303523      TOX4
14  chr14   21810166       21998602     NM_007192   SUPT16H
15  chr14   21810166       21998602     NM_019852    METTL3
16  chr14   21810166       21998602     NM_020366   RPGRIP1
19  chr14   21810166       21998602     NR_002916    SNORD8
20  chr14   21810166       21998602     NR_003029    SNORD9
21  chr14   21810166       21998602     NR_111966     SALL2
23   chr2   51064307       51226085  NM_001330079     NRXN1
26   chr7   21362947       21694281  NM_001277115    DNAH11
27   chr7   21362947       21694281  NM_001326542       SP4
28   chr7   21362947       21694281     NR_031594   MIR1183,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  108548740      108663115     NM_004398         DDX10
1   chr14   21775925       21885233  NM_001170629          CHD8
2   chr14   21775925       21885233     NM_007192       SUPT16H
3   chr14   21775925       21885233     NM_020366       RPGRIP1
5   chr14   21775925       21885233     NR_002916        SNORD8
6   chr14   21775925       21885233     NR_003029        SNORD9
7   chr16   16446023       16555556  NM_001282511        NPIPA8
8   chr16   16446023       16555556     NR_106971     MIR6511A4
9    chr2   97494746       97745073  NM_001122646       FAM178B
11   chr2   97494746       97745073     NM_016466       ANKRD39
13   chr2   97494746       97745073     NM_017623         CNNM3
14   chr2   97494746       97745073     NM_017789        SEMA4C
15   chr2   97494746       97745073     NM_144994       ANKRD23
16   chr2   97494746       97745073     NR_110209  LOC101927053
17   chr4  133441455      133562033     NR_126401     LINC01256
18   chr5  114091140      114306262     NR_130785  LOC101927078,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12816883       12932568  NM_001013631     HNRNPCL1
1    chr1   12816883       12932568  NM_001080830     PRAMEF12
2    chr1   12816883       12932568  NM_001146181     HNRNPCL3
3    chr1   12816883       12932568  NM_001146344     PRAMEF11
4    chr1   12816883       12932568  NM_001294139      PRAMEF1
5    chr1   12816883       12932568  NM_001302551     HNRNPCL4
7    chr1   12816883       12932568     NM_023014      PRAMEF2
8    chr1   12816883       12932568     NM_152290     C1orf158
9    chr1  102372129      102496169     NR_110211        OLFM3
10  chr14   21780722       22036917  NM_001163380        RAB2B
11  chr14   21780722       22036917  NM_001170629         CHD8
12  chr14   21780722       22036917  NM_001303523         TOX4
13  chr14   21780722       22036917     NM_007192      SUPT16H
14  chr14   21780722       22036917     NM_019852       METTL3
15  chr14   21780722       22036917     NM_020366      RPGRIP1
18  chr14   21780722       22036917     NR_002916       SNORD8
19  chr14   21780722       22036917     NR_003029       SNORD9
20  chr14   21780722       22036917     NR_111966        SALL2
22  chr20   14852453       14957247     NM_080676      MACROD2
23  chr20   14852453       14957247     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21823918       21939513  NM_001163380         RAB2B
1   chr14   21823918       21939513  NM_001170629          CHD8
2   chr14   21823918       21939513     NM_007192       SUPT16H
5   chr14   21823918       21939513     NR_002916        SNORD8
6   chr14   21823918       21939513     NR_003029        SNORD9
7   chr15   28677601       30301557  NM_001130414         APBA2
8   chr15   28677601       30301557  NM_001282468       GOLGA8M
9   chr15   28677601       30301557  NM_001301025          TJP1
12  chr15   28677601       30301557     NM_015307      FAM189A1
13  chr15   28677601       30301557     NM_138704        NSMCE3
14  chr15   28677601       30301557     NR_026589       WHAMMP2
15  chr15   28677601       30301557     NR_033351       GOLGA8F
16  chr15   28677601       30301557     NR_033353       GOLGA8G
17  chr15   28677601       30301557     NR_036443       HERC2P9
18  chr15   28677601       30301557     NR_036475  LOC100289656
19  chr15   28677601       30301557     NR_037599     PDCD6IPP2
20  chr15   28677601       30301557     NR_039734     MIR4509-3
21  chr15   28677601       30301557     NR_047567     GOLGA6L7P
22  chr15   28677601       30301557     NR_135221  LOC100130111
23  chr17   21695801       21966797     NR_027084      FLJ36000
24  chr17   21695801       21966797     NR_028336       FAM27E5
25   chr3  176591522      177045495  NM_001321193       TBL1XR1
27   chr3  176591522      177045495     NR_047465     LINC00501,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr14   21882766       22153717  NM_001001912           OR4E2
1   chr14   21882766       22153717  NM_001005465          OR10G3
2   chr14   21882766       22153717  NM_001005466          OR10G2
3   chr14   21882766       22153717  NM_001163380           RAB2B
4   chr14   21882766       22153717  NM_001170629            CHD8
5   chr14   21882766       22153717  NM_001303523            TOX4
6   chr14   21882766       22153717  NM_001317107           OR4E1
7   chr14   21882766       22153717     NM_019852          METTL3
10  chr14   21882766       22153717     NR_111966           SALL2
12  chr15   28203444       28359785     NM_000275            OCA2
14  chr15   28203444       28359785     NM_004667           HERC2
15  chr15   44006662       44114524  NM_001018108           SERF2
19  chr15   44006662       44114524  NM_001199885            HYPK
20  chr15   44006662       44114524  NM_001258031         SERINC4
21  chr15   44006662       44114524     NM_005313           PDIA3
22  chr15   44006662       44114524     NM_005926           MFAP1
23  chr15   44006662       44114524     NM_025165            ELL3
24  chr15   44006662       44114524     NR_002318      CATSPER2P1
25  chr15   44006662       44114524     NR_031695         MIR1282
26  chr15   44006662       44114524     NR_037673  SERF2-C15ORF63
27   chr2   35669381       35770288     NR_039629        MIR548AD
28   chr4   69240919       69505674     NM_001077         UGT2B17
29   chr4   69240919       69505674     NM_014058       TMPRSS11E
30   chr4  169194756      169312847  NM_001012967          DDX60L
32   chr4  169194756      169312847     NM_017631           DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  134011355      134351001  NM_001098637        PWWP2B
1   chr10  134011355      134351001  NM_001143757        LRRC27
4   chr10  134011355      134351001  NM_001318878        STK32C
9   chr10  134011355      134351001     NM_006426        DPYSL4
11  chr10  134011355      134351001     NM_173541      C10orf91
14  chr16   16382258       16512265  NM_001004067         NOMO3
15  chr16   16382258       16512265  NM_001282511        NPIPA8
16  chr16   16382258       16512265     NR_036140     MIR3179-1
17  chr16   16382258       16512265     NR_036141     MIR3180-1
18  chr16   16382258       16512265     NR_036142     MIR3180-2
19  chr16   16382258       16512265     NR_036447        PKD1P1
20  chr16   16382258       16512265     NR_103772  LOC100288162
21  chr16   16382258       16512265     NR_106766     MIR6511A1
22  chr16   16382258       16512265     NR_106971     MIR6511A4
23  chr16   16382258       16512265     NR_107060     MIR6770-2
24  chr16   16382258       16512265     NR_128713     MIR3670-4
25   chr4  169189209      169298200  NM_001012967        DDX60L
26   chr4  169189209      169298200     NM_017631         DDX60
27   chr9   39053131       39182566     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245034762      245143926  NM_001143943        EFCAB2
3    chr1  245034762      245143926     NR_111907  LOC101928068
4   chr14   21855073       21978299  NM_001163380         RAB2B
5   chr14   21855073       21978299  NM_001170629          CHD8
6   chr14   21855073       21978299  NM_001303523          TOX4
7   chr14   21855073       21978299     NM_019852        METTL3
10  chr14   21855073       21978299     NR_002916        SNORD8
11  chr14   21855073       21978299     NR_003029        SNORD9
12   chr3  118045271      118348012     NR_135547  LOC105374060
13   chr7  110511670      110653106  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   19675646       19828912     NM_006001        TUBA3C
1   chr13   19675646       19828912     NR_126054  LOC101928697
2   chr14   21828209       21956306  NM_001163380         RAB2B
3   chr14   21828209       21956306  NM_001170629          CHD8
4   chr14   21828209       21956306  NM_001303523          TOX4
5   chr14   21828209       21956306     NM_007192       SUPT16H
8   chr14   21828209       21956306     NR_002916        SNORD8
9   chr14   21828209       21956306     NR_003029        SNORD9
10  chr15   28526753       30065114  NM_001130414         APBA2
11  chr15   28526753       30065114  NM_001282468       GOLGA8M
12  chr15   28526753       30065114  NM_001301025          TJP1
15  chr15   28526753       30065114     NM_004667         HERC2
16  chr15   28526753       30065114     NM_015307      FAM189A1
17  chr15   28526753       30065114     NM_138704        NSMCE3
18  chr15   28526753       30065114     NR_026589       WHAMMP2
19  chr15   28526753       30065114     NR_033351       GOLGA8F
21  chr15   28526753       30065114     NR_033353       GOLGA8G
23  chr15   28526753       30065114     NR_036443       HERC2P9
24  chr15   28526753       30065114     NR_036475  LOC100289656
25  chr15   28526753       30065114     NR_037599     PDCD6IPP2
26  chr15   28526753       30065114     NR_039734     MIR4509-3
28  chr15   28526753       30065114     NR_047567     GOLGA6L7P
29  chr15   28526753       30065114     NR_135221  LOC100130111
30  chr16   76808295       76943615     NR_039870       MIR4719
31  chr17   48048715       48240330  NM_001199898          PDK2
34  chr17   48048715       48240330  NM_001257359        SAMD14
35  chr17   48048715       48240330     NM_001934          DLX4
36  chr17   48048715       48240330     NM_002204         ITGA3
38  chr17   48048715       48240330     NM_005220          DLX3
39  chr17   48048715       48240330     NM_032595       PPP1R9B
41  chr17   48048715       48240330     NR_038230     LOC284080
42   chr2  133043481      133226027  NM_001304449        ZNF806
43   chr2  133043481      133226027     NM_001508         GPR39
44   chr2  133043481      133226027     NR_135203       FAM201B
45  chr20    5221375        5389664     NM_144773        PROKR2
46   chr3  174308202      175767653     NM_207015      NAALADL2
47   chr3  174308202      175767653     NR_039952       MIR4789
48   chr3  174308202      175767653     NR_046390  NAALADL2-AS3
49   chr3  174308202      175767653     NR_046713  NAALADL2-AS2
50   chr3  174308202      175767653     NR_046714  NAALADL2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81480245       81688912     NR_002724         MBL1P
1   chr10   81480245       81688912     NR_029407     LOC642361
2   chr10   81480245       81688912     NR_033857       BMS1P21
3   chr10   81480245       81688912     NR_120611    NUTM2B-AS1
6    chr7      60980        1809501  NM_001031617         COX19
7    chr7      60980        1809501  NM_001080453         INTS1
8    chr7      60980        1809501  NM_001080461          UNCX
9    chr7      60980        1809501  NM_001097620      TMEM184A
10   chr7      60980        1809501  NM_001098201         GPER1
11   chr7      60980        1809501  NM_001128636         ELFN1
12   chr7      60980        1809501  NM_001130965          SUN1
13   chr7      60980        1809501  NM_001134340         PSMG3
14   chr7      60980        1809501  NM_001134395       C7orf50
15   chr7      60980        1809501  NM_001164758       PRKAR1B
22   chr7      60980        1809501  NM_001195127  WI2-2373I1.2
23   chr7      60980        1809501  NM_001284308         ADAP1
27   chr7      60980        1809501  NM_001303473        GPR146
31   chr7      60980        1809501     NM_002360          MAFK
34   chr7      60980        1809501     NM_015949          GET4
35   chr7      60980        1809501     NM_017781        CYP2W1
36   chr7      60980        1809501     NM_020223        FAM20C
38   chr7      60980        1809501     NM_033023         PDGFA
39   chr7      60980        1809501     NM_182491       ZFAND2A
40   chr7      60980        1809501     NM_182924       MICALL2
41   chr7      60980        1809501     NR_001288        TFAMP1
42   chr7      60980        1809501     NR_021487     PSMG3-AS1
43   chr7      60980        1809501     NR_029898        MIR339
44   chr7      60980        1809501     NR_033960     LOC442497
45   chr7      60980        1809501     NR_033963        HRAT92
46   chr7      60980        1809501     NR_075098        DNAAF5
47   chr7      60980        1809501     NR_108065  LOC100507642
48   chr7      60980        1809501     NR_110054  LOC101926963
50   chr7      60980        1809501     NR_110069  LOC101927021
52   chr7      60980        1809501     NR_120508     ELFN1-AS1
53   chr7      60980        1809501     NR_132384  LOC101927000
54   chr7      60980        1809501     NR_134324  LOC105375115
55   chr7      60980        1809501     NR_134325  LOC102723672
58   chr7   75750226       75962347  NM_001110199         SRRM3
59   chr7   75750226       75962347     NM_001540         HSPB1
60   chr7   75750226       75962347     NM_012479         YWHAG
61   chr8    7852031        8003620     NR_003668    DEFB109P1B
62   chr8    7852031        8003620     NR_027424        FAM66E
63   chr8    7852031        8003620     NR_031689      MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  142487495      142756798     NR_046228  ANKRD20A12P
1    chr1  187187936      187371597     NR_126347    LINC01036
2   chr17   70900346       71008439     NM_139177     SLC39A11
3   chr18   63838826       64196180     NM_021153        CDH19
4   chr22   19013407       19212061  NM_001184781        DGCR2
5   chr22   19013407       19212061  NM_001256534      SLC25A1
6   chr22   19013407       19212061     NM_001835       CLTCL1
7   chr22   19013407       19212061     NM_005315         GSC2
9   chr22   19013407       19212061     NM_022719       DGCR14
10  chr22   19013407       19212061     NM_053006        TSSK2
11  chr22   19013407       19212061     NR_024157       DGCR11
12  chr22   19013407       19212061     NR_103767    LINC01311
13  chr22   19013407       19212061     NR_110533        DGCR5
14   chr6    5153614        5304999  NM_001164840        LYRM4
16   chr6    5153614        5304999  NM_001318872        FARS2
19   chr6    5153614        5304999     NR_126015    LYRM4-AS1
21   chr7    3287144        3947272     NM_152744         SDK1
22   chr7   71515309       71731305  NM_001017440        CALN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87698821       87858179  NM_001290053  LOC101927844
1    chr1   87698821       87858179     NM_006769          LMO4
2    chr1   87698821       87858179     NR_038324     LINC01364
3    chr1  152422139      152584128     NM_019060         CRCT1
4    chr1  152422139      152584128     NM_032563         LCE3D
5    chr1  152422139      152584128     NM_178434         LCE3C
6    chr1  152422139      152584128     NM_178435         LCE3E
7    chr1  152422139      152584128     NM_178438         LCE5A
8   chr14   21787684       22017683  NM_001163380         RAB2B
9   chr14   21787684       22017683  NM_001170629          CHD8
10  chr14   21787684       22017683  NM_001303523          TOX4
11  chr14   21787684       22017683     NM_007192       SUPT16H
12  chr14   21787684       22017683     NM_019852        METTL3
13  chr14   21787684       22017683     NM_020366       RPGRIP1
16  chr14   21787684       22017683     NR_002916        SNORD8
17  chr14   21787684       22017683     NR_003029        SNORD9
18  chr14   21787684       22017683     NR_111966         SALL2
20   chr9   88392265       88912826  NM_001185074        ZCCHC6
21   chr9   88392265       88912826  NM_001276366      C9orf153
23   chr9   88392265       88912826  NM_001321881         NAA35
26   chr9   88392265       88912826     NM_016548         GOLM1
28   chr9   88392265       88912826     NM_030940         ISCA1
30   chr9   88392265       88912826     NR_029410     LOC389765
31   chr9   88392265       88912826     NR_110996  LOC101927623,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72694273       74442794     NM_013381         TRHDE
1   chr12   72694273       74442794     NR_110130  LOC101928137
2   chr14   21913233       22371540  NM_001001912         OR4E2
3   chr14   21913233       22371540  NM_001005465        OR10G3
4   chr14   21913233       22371540  NM_001005466        OR10G2
5   chr14   21913233       22371540  NM_001163380         RAB2B
6   chr14   21913233       22371540  NM_001303523          TOX4
7   chr14   21913233       22371540  NM_001317107         OR4E1
8   chr14   21913233       22371540     NM_019852        METTL3
10  chr14   21913233       22371540     NR_111966         SALL2
12   chr3   17348951       17526961  NM_001134381        TBC1D5
14   chr4  134625733      135944245  NM_001114734       PABPC4L
15   chr4  169215487      169350807  NM_001012967        DDX60L
17   chr4  169215487      169350807     NM_017631         DDX60,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21846199       21983586  NM_001163380     RAB2B
1  chr14   21846199       21983586  NM_001170629      CHD8
2  chr14   21846199       21983586  NM_001303523      TOX4
3  chr14   21846199       21983586     NM_007192   SUPT16H
4  chr14   21846199       21983586     NM_019852    METTL3
7  chr14   21846199       21983586     NR_002916    SNORD8
8  chr14   21846199       21983586     NR_003029    SNORD9
9  chr17   63470705       63575170     NM_004655     AXIN2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28711751       29622627  NM_001130414         APBA2
1   chr15   28711751       29622627  NM_001282468       GOLGA8M
2   chr15   28711751       29622627     NM_015307      FAM189A1
3   chr15   28711751       29622627     NM_138704        NSMCE3
4   chr15   28711751       29622627     NR_026589       WHAMMP2
5   chr15   28711751       29622627     NR_033351       GOLGA8F
6   chr15   28711751       29622627     NR_033353       GOLGA8G
7   chr15   28711751       29622627     NR_036443       HERC2P9
8   chr15   28711751       29622627     NR_036475  LOC100289656
9   chr15   28711751       29622627     NR_037599     PDCD6IPP2
10  chr15   28711751       29622627     NR_039734     MIR4509-3
11  chr15   28711751       29622627     NR_047567     GOLGA6L7P
12   chr4   69265771       69415587     NM_001077       UGT2B17
13   chr4   69265771       69415587     NM_014058     TMPRSS11E
14   chr8    7129825        7230286  NM_001164457       ZNF705G
15   chr8    7129825        7230286  NM_001256873       USP17L1
16   chr8    7129825        7230286  NM_001256874       USP17L4
17   chr8    7129825        7230286     NR_003668    DEFB109P1B
18   chr8    7129825        7230286     NR_027000     LINC00965
19   chr8    7129825        7230286     NR_027423        FAM66B,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21814374       21938414  NM_001163380     RAB2B
1  chr14   21814374       21938414  NM_001170629      CHD8
2  chr14   21814374       21938414     NM_007192   SUPT16H
3  chr14   21814374       21938414     NM_020366   RPGRIP1
6  chr14   21814374       21938414     NR_002916    SNORD8
7  chr14   21814374       21938414     NR_003029    SNORD9
8   chr9   41524774       41790218     NR_003528   ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145301480      145554394  NM_001039888      ANKRD34A
1    chr1  145301480      145554394  NM_001184795        PEX11B
2    chr1  145301480      145554394  NM_001277444         NBPF9
3    chr1  145301480      145554394  NM_001278267        NBPF20
4    chr1  145301480      145554394  NM_001280799       ANKRD35
5    chr1  145301480      145554394  NM_001302371        NBPF10
6    chr1  145301480      145554394  NM_001303040        ITGA10
7    chr1  145301480      145554394  NM_001313972         TXNIP
9    chr1  145301480      145554394     NM_005105         RBM8A
11   chr1  145301480      145554394     NM_032305       POLR3GL
12   chr1  145301480      145554394     NM_145277          HFE2
13   chr1  145301480      145554394     NM_153713         LIX1L
14   chr1  145301480      145554394     NR_002328        GNRHR2
18   chr1  145301480      145554394     NR_104217       NBPF25P
19   chr1  145301480      145554394     NR_125967  LOC101928979
20  chr11   89686880       89788122  NM_001136486        TRIM64
21  chr11   89686880       89788122  NM_001195234       TRIM49C
22  chr11   89686880       89788122     NR_028346      TRIM53AP
23  chr14   21806634       21984940  NM_001163380         RAB2B
24  chr14   21806634       21984940  NM_001170629          CHD8
25  chr14   21806634       21984940  NM_001303523          TOX4
26  chr14   21806634       21984940     NM_007192       SUPT16H
27  chr14   21806634       21984940     NM_019852        METTL3
28  chr14   21806634       21984940     NM_020366       RPGRIP1
31  chr14   21806634       21984940     NR_002916        SNORD8
32  chr14   21806634       21984940     NR_003029        SNORD9
33  chr14   67492332       67747398  NM_001256550          MPP5
34  chr14   67492332       67747398     NM_020806          GPHN
35  chr14   67492332       67747398     NM_173526        FAM71D
36   chr9   39088402       39379472  NM_001085452     SPATA31A1
37   chr9   39088402       39379472     NM_033655       CNTNAP3
38   chr9   39088402       39379472     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   30185625       30441820     NM_000510          FSHB
1   chr11   30185625       30441820  NM_001145399        MPPED2
3   chr11   30185625       30441820     NM_152316       ARL14EP
4   chr14   21903306       22032280  NM_001163380         RAB2B
5   chr14   21903306       22032280  NM_001303523          TOX4
6   chr14   21903306       22032280     NM_019852        METTL3
7   chr14   21903306       22032280     NM_020920          CHD8
9   chr14   21903306       22032280     NR_111966         SALL2
11   chr4  128417304      128689743  NM_001318467      SLC25A31
12   chr4  128417304      128689743     NM_015693          INTU
13   chr7   21221556       21478017  NM_001326542           SP4
15   chr7   63948187       64407969  NM_001130022        ZNF680
16   chr7   63948187       64407969  NM_001160183        ZNF138
17   chr7   63948187       64407969  NM_001282360        ZNF107
18   chr7   63948187       64407969     NM_021148        ZNF273
20   chr7   63948187       64407969     NR_033245     LOC641746
22   chr7   63948187       64407969     NR_077227  LOC100128885
24   chr7   63948187       64407969     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89086667       89228645  NM_001143837          NOX4
6   chr14   21857400       21966391  NM_001163380         RAB2B
7   chr14   21857400       21966391  NM_001170629          CHD8
8   chr14   21857400       21966391  NM_001303523          TOX4
9   chr14   21857400       21966391     NM_019852        METTL3
12  chr14   21857400       21966391     NR_002916        SNORD8
13  chr14   21857400       21966391     NR_003029        SNORD9
14  chr22   17230966       19775241     NM_000407         GP1BB
15  chr22   17230966       19775241  NM_001009939         SEPT5
16  chr22   17230966       19775241  NM_001035247         UFD1L
17  chr22   17230966       19775241  NM_001037814          GAB4
18  chr22   17230966       19775241  NM_001122731        MICAL3
19  chr22   17230966       19775241  NM_001127649         PEX26
21  chr22   17230966       19775241  NM_001163079         CECR6
22  chr22   17230966       19775241  NM_001166242      C22orf39
23  chr22   17230966       19775241  NM_001178010         CDC45
24  chr22   17230966       19775241  NM_001184781         DGCR2
25  chr22   17230966       19775241  NM_001193414         TUBA8
26  chr22   17230966       19775241  NM_001195226         PRODH
28  chr22   17230966       19775241  NM_001244567           BID
31  chr22   17230966       19775241  NM_001256534       SLC25A1
32  chr22   17230966       19775241  NM_001270733       BCL2L13
33  chr22   17230966       19775241  NM_001282227         CECR1
35  chr22   17230966       19775241  NM_001288707  LOC101929372
36  chr22   17230966       19775241  NM_001289905        IL17RA
37  chr22   17230966       19775241  NM_001290046         CECR2
39  chr22   17230966       19775241  NM_001303484      SLC25A18
40  chr22   17230966       19775241  NM_001318151        MRPL40
42  chr22   17230966       19775241     NM_001696      ATP6V1E1
43  chr22   17230966       19775241     NM_001835        CLTCL1
..    ...        ...            ...           ...           ...
48  chr22   17230966       19775241     NM_005315          GSC2
49  chr22   17230966       19775241     NM_005675         DGCR6
51  chr22   17230966       19775241     NM_005992          TBX1
55  chr22   17230966       19775241     NM_017414         USP18
56  chr22   17230966       19775241     NM_017829         CECR5
57  chr22   17230966       19775241     NM_022719        DGCR14
60  chr22   17230966       19775241     NM_053006         TSSK2
64  chr22   17230966       19775241     NM_175878          XKR3
66  chr22   17230966       19775241     NR_002733         DGCR5
67  chr22   17230966       19775241     NR_003267         GGT3P
68  chr22   17230966       19775241     NR_003607       HSFY1P1
69  chr22   17230966       19775241     NR_015352         CECR7
70  chr22   17230966       19775241     NR_024157        DGCR11
71  chr22   17230966       19775241     NR_024159         DGCR9
72  chr22   17230966       19775241     NR_024381     LINC00895
73  chr22   17230966       19775241     NR_024417      FLJ41941
74  chr22   17230966       19775241     NR_024482     CECR5-AS1
75  chr22   17230966       19775241     NR_026651        DGCR10
76  chr22   17230966       19775241     NR_030378        MIR648
77  chr22   17230966       19775241     NR_036168     MIR3198-1
78  chr22   17230966       19775241     NR_037611   SEPT5-GP1BB
80  chr22   17230966       19775241     NR_038398         CECR3
82  chr22   17230966       19775241     NR_103718     LINC00528
83  chr22   17230966       19775241     NR_103767     LINC01311
84  chr22   17230966       19775241     NR_103793  LOC100996342
86  chr22   17230966       19775241     NR_135922  LOC102725072
87  chr22   17230966       19775241     NR_136561     LOC642643
88  chr22   17230966       19775241     NR_136570  LOC100996415
89  chr22   17230966       19775241     NR_136571  LOC100996432
90  chr22   17230966       19775241     NR_136574  LOC105379550

[62 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12    1054183        1232014  NM_001297419      RAD52
3   chr12    1054183        1232014  NM_001301248       ERC1
5   chr13   54699130       54871791     NR_108062  LINC00458
7   chr16   68609235       68851088  NM_001305204      ZFP90
8   chr16   68609235       68851088  NM_001317184       CDH1
9   chr16   68609235       68851088  NM_001317195       CDH3
10  chr16   68609235       68851088     NR_106988  MIR7641-2
11   chr3  118719542      118868617  NM_001015887     IGSF11
13   chr3  118719542      118868617     NM_152539    C3orf30,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102431799      102985695     NR_110211         OLFM3
1    chr1  143739174      143969173  NM_001123068       PPIAL4G
2    chr1  143739174      143969173  NM_001287385        FAM72C
3    chr1  143739174      143969173  NM_001345942        FAM72D
7    chr1  143739174      143969173     NR_104014     LINC01138
9   chr10   81505607       81627804     NR_029407     LOC642361
10  chr10   81505607       81627804     NR_120611    NUTM2B-AS1
13  chr16   14988121       15157206  NM_001270767         NTAN1
14  chr16   14988121       15157206  NM_001285445        PDXDC1
19  chr16   14988121       15157206  NM_001301064          RRN3
21  chr16   14988121       15157206     NM_006985        NPIPA1
22  chr16   14988121       15157206     NM_014287         NOMO1
23  chr16   14988121       15157206     NR_036140     MIR3179-1
24  chr16   14988121       15157206     NR_036141     MIR3180-1
25  chr16   14988121       15157206     NR_036142     MIR3180-2
26  chr16   14988121       15157206     NR_103772  LOC100288162
27  chr16   14988121       15157206     NR_106970     MIR6511A3
28  chr16   14988121       15157206     NR_107060     MIR6770-2
29  chr16   14988121       15157206     NR_128713     MIR3670-4
30   chr5   26896630       27028924     NM_016279          CDH9
31   chr7   14870632       15038611     NM_004080          DGKB
33   chr7  109510750      109683633     NR_003024       EIF3IP1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21763679       21872914  NM_001170629      CHD8
1   chr14   21763679       21872914     NM_007192   SUPT16H
2   chr14   21763679       21872914     NM_020366   RPGRIP1
4   chr14   21763679       21872914     NR_002916    SNORD8
5   chr14   21763679       21872914     NR_003029    SNORD9
6   chr14   21823047       21934726  NM_001163380     RAB2B
7   chr14   21823047       21934726  NM_001170629      CHD8
8   chr14   21823047       21934726     NM_007192   SUPT16H
11  chr14   21823047       21934726     NR_002916    SNORD8
12  chr14   21823047       21934726     NR_003029    SNORD9
13   chr6  155407541      155510510     NM_012454     TIAM2
14   chr6  162776165      162929038     NM_013988     PARK2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143601014      143906908  NM_001123068       PPIAL4G
1   chr1  143601014      143906908  NM_001287385        FAM72C
2   chr1  143601014      143906908  NM_001345942        FAM72D
6   chr1  143601014      143906908     NR_104014     LINC01138
7   chr1  143601014      143906908     NR_106967       MIR6077
8   chr1  143601014      143906908     NR_111930  LOC100132057
10  chr7  110750727      110897335  NM_001099658         LRRN3
11  chr7  110750727      110897335  NM_001244606        IMMP2L
13  chr9    4381734        4535445     NM_004170        SLC1A1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  186195817      186311225  NM_001303232       PRG4
1    chr1  186195817      186311225     NM_003292        TPR
2   chr12   72712798       72831424     NM_013381      TRHDE
3   chr13   85959557       86060286     NR_046989  LINC00351
4   chr14   21825608       22448065  NM_001001912      OR4E2
5   chr14   21825608       22448065  NM_001005465     OR10G3
6   chr14   21825608       22448065  NM_001005466     OR10G2
7   chr14   21825608       22448065  NM_001163380      RAB2B
8   chr14   21825608       22448065  NM_001170629       CHD8
9   chr14   21825608       22448065  NM_001303523       TOX4
10  chr14   21825608       22448065  NM_001317107      OR4E1
11  chr14   21825608       22448065     NM_007192    SUPT16H
12  chr14   21825608       22448065     NM_019852     METTL3
15  chr14   21825608       22448065     NR_002916     SNORD8
16  chr14   21825608       22448065     NR_003029     SNORD9
17  chr14   21825608       22448065     NR_111966      SALL2
19   chr7    4114876        4285887  NM_001079653       SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82257739       82441581  NM_001297704        ADGRL2
2   chr10   67971694       68352795  NM_001127384        CTNNA3
4   chr15   28173019       29761624     NM_000275          OCA2
5   chr15   28173019       29761624  NM_001130414         APBA2
6   chr15   28173019       29761624  NM_001282468       GOLGA8M
8   chr15   28173019       29761624     NM_004667         HERC2
9   chr15   28173019       29761624     NM_015307      FAM189A1
10  chr15   28173019       29761624     NM_138704        NSMCE3
11  chr15   28173019       29761624     NR_026589       WHAMMP2
12  chr15   28173019       29761624     NR_033351       GOLGA8F
14  chr15   28173019       29761624     NR_033353       GOLGA8G
16  chr15   28173019       29761624     NR_036443       HERC2P9
17  chr15   28173019       29761624     NR_036475  LOC100289656
18  chr15   28173019       29761624     NR_037599     PDCD6IPP2
19  chr15   28173019       29761624     NR_039734     MIR4509-3
21  chr15   28173019       29761624     NR_047567     GOLGA6L7P
22   chr2  131991445      132230131  NM_001077637        WTH3DI
23   chr2  131991445      132230131  NM_001083538         POTEE
24   chr2  131991445      132230131     NR_002826       NOC2LP2
25   chr2  131991445      132230131     NR_030728     LOC440910
26   chr2  131991445      132230131     NR_036499     LINC01120
27  chr20   14656810       14805545     NM_080676       MACROD2
28   chr5  106779495      107035668     NM_001962         EFNA5,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12   85666403       85767937     NM_006982          ALX1
1  chr15   28793394       29195740  NM_001282468       GOLGA8M
2  chr15   28793394       29195740     NR_026589       WHAMMP2
3  chr15   28793394       29195740     NR_036443       HERC2P9
4  chr15   28793394       29195740     NR_036475  LOC100289656
5  chr15   28793394       29195740     NR_037599     PDCD6IPP2
6  chr15   28793394       29195740     NR_047567     GOLGA6L7P
7   chr7  110685365      110826478  NM_001099658         LRRN3
8   chr7  110685365      110826478  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  100694057      102141833     NM_000392         ABCC2
1   chr10  100694057      102141833  NM_001001342       BLOC1S2
2   chr10  100694057      102141833  NM_001100626        ERLIN1
3   chr10  100694057      102141833  NM_001166244         HPSE2
4   chr10  100694057      102141833  NM_001253837        PKD2L1
5   chr10  100694057      102141833     NM_001278          CHUK
8   chr10  100694057      102141833  NM_001303404       CWF19L1
9   chr10  100694057      102141833     NM_001308          CPN1
10  chr10  100694057      102141833  NM_001318326         DNMBP
12  chr10  100694057      102141833  NM_001320974         COX15
14  chr10  100694057      102141833     NM_002079          GOT1
15  chr10  100694057      102141833     NM_005063           SCD
18  chr10  100694057      102141833     NM_015960          CUTC
19  chr10  100694057      102141833     NM_020348         CNNM1
20  chr10  100694057      102141833     NM_020354        ENTPD7
21  chr10  100694057      102141833     NM_031212      SLC25A28
22  chr10  100694057      102141833     NM_145285        NKX2-3
23  chr10  100694057      102141833     NR_002954       SNORA12
24  chr10  100694057      102141833     NR_024130     DNMBP-AS1
25  chr10  100694057      102141833     NR_026762      OLMALINC
26  chr10  100694057      102141833     NR_120618     LINC01475
27  chr16   14984236       15086339  NM_001285445        PDXDC1
33  chr16   14984236       15086339     NM_006985        NPIPA1
34  chr16   14984236       15086339     NM_014287         NOMO1
35  chr16   14984236       15086339     NR_036140     MIR3179-1
36  chr16   14984236       15086339     NR_036141     MIR3180-1
37  chr16   14984236       15086339     NR_036142     MIR3180-2
38  chr16   14984236       15086339     NR_103772  LOC100288162
39  chr16   14984236       15086339     NR_106970     MIR6511A3
40  chr16   14984236       15086339     NR_107060     MIR6770-2
41  chr16   14984236       15086339     NR_128713     MIR3670-4
42   chr5   99646567       99774233     NR_027503  LOC100133050
43   chr7    6812946        7318530  NM_001099697      RSPH10B2
44   chr7    6812946        7318530     NM_020156       C1GALT1
45   chr7    6812946        7318530     NM_198097         CCZ1B
46   chr7    6812946        7318530     NR_034022  LOC100131257
47   chr7    6812946        7318530     NR_037454       MIR3683
48   chr7    6812946        7318530     NR_108073  LOC101927354
49   chr9   17167421       17413867  NM_001114395         CNTLN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67313016       67455020     NM_000695       ALDH3B2
1   chr11   67313016       67455020     NM_000852         GSTP1
3   chr11   67313016       67455020  NM_001166102        NDUFV1
4   chr11   67313016       67455020  NM_001243750         NUDT8
5   chr11   67313016       67455020     NM_005995         TBX10
6   chr11   67313016       67455020     NM_080658          ACY3
8   chr11   67313016       67455020     NR_033791        DOC2GP
9   chr11   67313016       67455020     NR_130935      C11orf72
10  chr11   83601430       83733962  NM_001142699          DLG2
14   chr2  186313237      186761578     NM_173651         FSIP2
15   chr2  186313237      186761578     NR_110214  LOC101927196
18   chr2  186313237      186761578     NR_144453     FSIP2-AS1
20  chr20   14648850       14869154     NM_080676       MACROD2
21  chr20   14648850       14869154     NR_037841   MACROD2-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   30225828       30354965  NM_001301025      TJP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   19596201       19743136  NM_001142308        MALRD1
1   chr14   21758901       21904330  NM_001170629          CHD8
2   chr14   21758901       21904330     NM_007192       SUPT16H
3   chr14   21758901       21904330     NM_020366       RPGRIP1
5   chr14   21758901       21904330     NR_002916        SNORD8
6   chr14   21758901       21904330     NR_003029        SNORD9
7   chr15   99904717      100022491  NM_001284400        LRRC28
9    chr9   66606513       67278042     NR_002817        AQP7P1
10   chr9   66606513       67278042     NR_046175     LOC286297
11   chr9   66606513       67278042     NR_121570  LOC101928381
12   chr9   66606513       67278042     NR_135597  LOC101928195
13   chr9   66606513       67278042     NR_136299  LOC101929583
14   chr9  102148901      102533737     NR_109802  LOC101928438,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  105755270      107073069     NR_125954  LOC101928476
2   chr10   88927548       89134421  NM_001099338        NUTM2A
3   chr10   88927548       89134421  NM_001330112        FAM35A
5   chr10   88927548       89134421     NR_024397    NUTM2A-AS1
6   chr10   88927548       89134421     NR_029408     LINC00863
7   chr10   88927548       89134421     NR_075100        NUTM2D
9   chr16   18425597       18554272  NM_001004060         NOMO2
10  chr16   18425597       18554272  NM_001282511        NPIPA8
11  chr16   18425597       18554272     NR_036140     MIR3179-1
12  chr16   18425597       18554272     NR_036142     MIR3180-2
13  chr16   18425597       18554272     NR_036144     MIR3180-3
14  chr16   18425597       18554272     NR_037442     MIR3670-1
15  chr16   18425597       18554272     NR_103772  LOC100288162
16  chr16   18425597       18554272     NR_106971     MIR6511A4
17  chr16   18425597       18554272     NR_107060     MIR6770-2
18  chr20   14740339       14840800     NM_080676       MACROD2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   99202088       99541734  NM_001243270     CNTN5
3   chr14   21695687       23106883  NM_001001912     OR4E2
4   chr14   21695687       23106883  NM_001005465    OR10G3
5   chr14   21695687       23106883  NM_001005466    OR10G2
6   chr14   21695687       23106883  NM_001163380     RAB2B
7   chr14   21695687       23106883  NM_001170629      CHD8
8   chr14   21695687       23106883  NM_001303523      TOX4
9   chr14   21695687       23106883  NM_001317107     OR4E1
10  chr14   21695687       23106883     NM_001344      DAD1
11  chr14   21695687       23106883     NM_007192   SUPT16H
12  chr14   21695687       23106883     NM_019852    METTL3
13  chr14   21695687       23106883     NM_020366   RPGRIP1
15  chr14   21695687       23106883     NM_022060     ABHD4
16  chr14   21695687       23106883     NM_031314    HNRNPC
18  chr14   21695687       23106883     NR_002916    SNORD8
19  chr14   21695687       23106883     NR_003029    SNORD9
20  chr14   21695687       23106883     NR_111966     SALL2
22   chr3   60153192       60355008  NM_001320899      FHIT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   41389308       41532039  NM_001145353          ELF1
2   chr13   41389308       41532039     NR_003365       SUGT1P3
3   chr13   41389308       41532039     NR_038259       TPTE2P5
4   chr13  113501212      113613624     NM_015205        ATP11A
5   chr15   28545042       29057782  NM_001282468       GOLGA8M
6   chr15   28545042       29057782     NM_004667         HERC2
7   chr15   28545042       29057782     NR_026589       WHAMMP2
8   chr15   28545042       29057782     NR_033351       GOLGA8F
10  chr15   28545042       29057782     NR_033353       GOLGA8G
12  chr15   28545042       29057782     NR_036443       HERC2P9
13  chr15   28545042       29057782     NR_036475  LOC100289656
14  chr15   28545042       29057782     NR_037599     PDCD6IPP2
15  chr15   28545042       29057782     NR_039734     MIR4509-3
17  chr15   28754170       30346800  NM_001130414         APBA2
18  chr15   28754170       30346800  NM_001282468       GOLGA8M
19  chr15   28754170       30346800  NM_001301025          TJP1
22  chr15   28754170       30346800     NM_015307      FAM189A1
23  chr15   28754170       30346800     NM_138704        NSMCE3
24  chr15   28754170       30346800     NR_026589       WHAMMP2
25  chr15   28754170       30346800     NR_033351       GOLGA8F
26  chr15   28754170       30346800     NR_033353       GOLGA8G
27  chr15   28754170       30346800     NR_036443       HERC2P9
28  chr15   28754170       30346800     NR_036475  LOC100289656
29  chr15   28754170       30346800     NR_037599     PDCD6IPP2
30  chr15   28754170       30346800     NR_047567     GOLGA6L7P
31  chr15   28754170       30346800     NR_135221  LOC100130111
32   chr5   17700292       18285354     NR_134286     LOC646241
34   chr8   97801120       98181057     NM_016134           CPQ
35   chr8   97801120       98181057     NR_125390  LOC101927066,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   58505964       59245195     NR_037490       MIR3924
1   chr15   29772387       30004470  NM_001301025          TJP1
4   chr15   29772387       30004470     NM_015307      FAM189A1
5   chr15   29772387       30004470     NR_135221  LOC100130111
6   chr16   21546320       22020326  NM_001077180        METTL9
7   chr16   21546320       22020326  NM_001161683          OTOA
8   chr16   21546320       22020326  NM_001164579      C16orf52
10  chr16   21546320       22020326  NM_001310148        NPIPB4
11  chr16   21546320       22020326     NM_003366        UQCRC2
12  chr16   21546320       22020326     NM_005849         IGSF6
15  chr16   21546320       22020326     NM_173806         PDZD9
16  chr16   21546320       22020326     NR_003370        RRN3P1
17  chr16   21546320       22020326     NR_110930  LOC101927814
18   chr4  128477885      128658027  NM_001318467      SLC25A31
19   chr4  128477885      128658027     NM_015693          INTU
20   chr6   90245321       90352991  NM_001242809        ANKRD6
23   chr6   90245321       90352991     NM_014611          MDN1
24   chr6   90245321       90352991     NM_020466         LYRM2
26   chr6   90245321       90352991     NR_111915  LOC101929057,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21831204       21998590  NM_001163380         RAB2B
1   chr14   21831204       21998590  NM_001170629          CHD8
2   chr14   21831204       21998590  NM_001303523          TOX4
3   chr14   21831204       21998590     NM_007192       SUPT16H
4   chr14   21831204       21998590     NM_019852        METTL3
7   chr14   21831204       21998590     NR_002916        SNORD8
8   chr14   21831204       21998590     NR_003029        SNORD9
9   chr14   21831204       21998590     NR_111966         SALL2
11  chr15  100125549      100330502  NM_001130928         MEF2A
12  chr15  100125549      100330502  NM_001284417        LYSMD4
15  chr15  100125549      100330502     NR_003260       DNM1P46
16  chr16   15056270       15187196  NM_001270767         NTAN1
17  chr16   15056270       15187196  NM_001285445        PDXDC1
22  chr16   15056270       15187196  NM_001301064          RRN3
24   chr7   64109304       64266915  NM_001160183        ZNF138
25   chr7   64109304       64266915  NM_001282360        ZNF107
28   chr7   64109304       64266915     NR_106898       MIR6839
29   chr9   41907955       42059544     NR_003670        FGF7P3
30   chr9   41907955       42059544     NR_015363         GLIDR
33   chr9   41907955       42059544     NR_126048  LOC102724238
34   chr9   41907955       42059544     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   85444318       85827844  NM_001079910        LRRIQ1
1   chr12   85444318       85827844     NM_006982          ALX1
2   chr14   21927848       22042100  NM_001005465        OR10G3
3   chr14   21927848       22042100  NM_001163380         RAB2B
4   chr14   21927848       22042100  NM_001303523          TOX4
5   chr14   21927848       22042100     NM_019852        METTL3
7   chr14   21927848       22042100     NR_111966         SALL2
9   chr14   67480424       67663577     NM_020806          GPHN
10  chr14   67480424       67663577     NM_173526        FAM71D
11  chr16   71129266       71633251     NM_000353           TAT
12  chr16   71129266       71633251  NM_001099642         CMTR2
13  chr16   71129266       71633251  NM_001166395         CHST4
14  chr16   71129266       71633251  NM_001198542         HYDIN
16  chr16   71129266       71633251  NM_001304492         ZNF23
21  chr16   71129266       71633251     NM_001740         CALB2
23  chr16   71129266       71633251     NM_006961         ZNF19
27  chr16   71129266       71633251     NR_103851       TAT-AS1
29  chr16   71129266       71633251     NR_135172  LOC105371335,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187171136      187349579     NR_126347     LINC01036
1   chr14   21826601       21999770  NM_001163380         RAB2B
2   chr14   21826601       21999770  NM_001170629          CHD8
3   chr14   21826601       21999770  NM_001303523          TOX4
4   chr14   21826601       21999770     NM_007192       SUPT16H
5   chr14   21826601       21999770     NM_019852        METTL3
8   chr14   21826601       21999770     NR_002916        SNORD8
9   chr14   21826601       21999770     NR_003029        SNORD9
10  chr14   21826601       21999770     NR_111966         SALL2
12  chr14   38151787       38263060  NM_001310135          TTC6
13   chr7   64057037       64169191  NM_001282360        ZNF107
14   chr7   64057037       64169191     NR_077227  LOC100128885
16   chr7   64057037       64169191     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143967841      144463396  NM_001135789       PPIAL4C
1   chr1  143967841      144463396  NM_001278267        NBPF20
2   chr1  143967841      144463396     NR_024511     LINC00623
4   chr1  143967841      144463396     NR_111953     LINC00869
5   chr1  243555145      245829285  NM_001012970      C1orf100
6   chr1  243555145      245829285     NM_001126          ADSS
7   chr1  243555145      245829285  NM_001143943        EFCAB2
8   chr1  243555145      245829285  NM_001206729          AKT3
9   chr1  243555145      245829285  NM_001242340      C1orf101
10  chr1  243555145      245829285  NM_001278196        ZBTB18
12  chr1  243555145      245829285  NM_001297746         DESI2
13  chr1  243555145      245829285  NM_001312871         COX20
15  chr1  243555145      245829285     NM_004501        HNRNPU
18  chr1  243555145      245829285     NM_006642       SDCCAG8
19  chr1  243555145      245829285     NM_018012        KIF26B
24  chr1  243555145      245829285     NR_033883     LOC339529
25  chr1  243555145      245829285     NR_111907  LOC101928068
26  chr1  243555145      245829285     NR_132782      SNORA100
27  chr7  143004476      143316812     NM_000083         CLCN1
28  chr7  143004476      143316812  NM_001008747       CTAGE15
29  chr7  143004476      143316812     NM_001224         CASP2
30  chr7  143004476      143316812  NM_001278297       FAM131B
31  chr7  143004476      143316812  NM_001322263  LOC100507507
32  chr7  143004476      143316812     NM_003461           ZYX
33  chr7  143004476      143316812     NM_005232         EPHA1
36  chr7  143004476      143316812     NM_176883       TAS2R41
37  chr7  143004476      143316812     NM_177437       TAS2R60
38  chr7  143004476      143316812     NR_033897     EPHA1-AS1
39  chr7  143004476      143316812     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21805131       22037214  NM_001163380     RAB2B
1   chr14   21805131       22037214  NM_001170629      CHD8
2   chr14   21805131       22037214  NM_001303523      TOX4
3   chr14   21805131       22037214     NM_007192   SUPT16H
4   chr14   21805131       22037214     NM_019852    METTL3
5   chr14   21805131       22037214     NM_020366   RPGRIP1
8   chr14   21805131       22037214     NR_002916    SNORD8
9   chr14   21805131       22037214     NR_003029    SNORD9
10  chr14   21805131       22037214     NR_111966     SALL2
12   chr2  214233706      214341907     NM_024532    SPAG16
13   chr6  146455260      146622068  NM_001278064      GRM1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143688065      144229326  NM_001123068       PPIAL4G
1   chr1  143688065      144229326  NM_001278267        NBPF20
2   chr1  143688065      144229326  NM_001287385        FAM72C
3   chr1  143688065      144229326  NM_001345942        FAM72D
7   chr1  143688065      144229326     NR_104014     LINC01138
8   chr1  143688065      144229326     NR_111930  LOC100132057
10  chr8    7898701        8037566     NR_031689      MIR548I3
11  chr9   41467299       42427882  NM_001012419     ANKRD20A3
12  chr9   41467299       42427882  NM_001012421     ANKRD20A2
13  chr9   41467299       42427882  NM_001113541     SPATA31A5
14  chr9   41467299       42427882     NM_015667     SPATA31A7
15  chr9   41467299       42427882     NR_003528       ZNF658B
16  chr9   41467299       42427882     NR_003670        FGF7P3
17  chr9   41467299       42427882     NR_015363         GLIDR
18  chr9   41467299       42427882     NR_026803       FAM74A1
21  chr9   41467299       42427882     NR_126048  LOC102724238
22  chr9   41467299       42427882     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21758806       22512159  NM_001001912         OR4E2
1   chr14   21758806       22512159  NM_001005465        OR10G3
2   chr14   21758806       22512159  NM_001005466        OR10G2
3   chr14   21758806       22512159  NM_001163380         RAB2B
4   chr14   21758806       22512159  NM_001170629          CHD8
5   chr14   21758806       22512159  NM_001303523          TOX4
6   chr14   21758806       22512159  NM_001317107         OR4E1
7   chr14   21758806       22512159     NM_007192       SUPT16H
8   chr14   21758806       22512159     NM_019852        METTL3
9   chr14   21758806       22512159     NM_020366       RPGRIP1
12  chr14   21758806       22512159     NR_002916        SNORD8
13  chr14   21758806       22512159     NR_003029        SNORD9
14  chr14   21758806       22512159     NR_111966         SALL2
16   chr7  110653946      110824419  NM_001099658         LRRN3
17   chr7  110653946      110824419  NM_001244606        IMMP2L
19   chr7  133210535      133491404     NM_021807         EXOC4
20   chr7  133210535      133491404     NR_120513  LOC101928861
21   chr9    9454738        9584307     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   53069802       53320722  NM_001098512         PRKG1
2   chr16   16349967       17080163  NM_001004067         NOMO3
3   chr16   16349967       17080163  NM_001282511        NPIPA8
4   chr16   16349967       17080163     NR_036140     MIR3179-1
5   chr16   16349967       17080163     NR_036141     MIR3180-1
6   chr16   16349967       17080163     NR_036142     MIR3180-2
7   chr16   16349967       17080163     NR_036447        PKD1P1
8   chr16   16349967       17080163     NR_103772  LOC100288162
9   chr16   16349967       17080163     NR_106766     MIR6511A1
10  chr16   16349967       17080163     NR_106971     MIR6511A4
11  chr16   16349967       17080163     NR_107060     MIR6770-2
12  chr16   16349967       17080163     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21803386       22215984  NM_001001912         OR4E2
1   chr14   21803386       22215984  NM_001005465        OR10G3
2   chr14   21803386       22215984  NM_001005466        OR10G2
3   chr14   21803386       22215984  NM_001163380         RAB2B
4   chr14   21803386       22215984  NM_001170629          CHD8
5   chr14   21803386       22215984  NM_001303523          TOX4
6   chr14   21803386       22215984  NM_001317107         OR4E1
7   chr14   21803386       22215984     NM_007192       SUPT16H
8   chr14   21803386       22215984     NM_019852        METTL3
9   chr14   21803386       22215984     NM_020366       RPGRIP1
12  chr14   21803386       22215984     NR_002916        SNORD8
13  chr14   21803386       22215984     NR_003029        SNORD9
14  chr14   21803386       22215984     NR_111966         SALL2
16  chr16   79766362       79960601     NR_104660     LINC01229
18  chr16   79766362       79960601     NR_104663        MAFTRR
19  chr20    2947322        3194810     NM_000490           AVP
20  chr20    2947322        3194810     NM_000915           OXT
21  chr20    2947322        3194810  NM_001267584         UBOX5
22  chr20    2947322        3194810  NM_001267623          ITPA
23  chr20    2947322        3194810  NM_001282533         LZTS3
25  chr20    2947322        3194810     NM_002836         PTPRA
26  chr20    2947322        3194810     NM_021826       FASTKD5
27  chr20    2947322        3194810     NM_023935        DDRGK1
28  chr20    2947322        3194810     NM_030811        MRPS26
31  chr20    2947322        3194810     NM_178332         GNRH2
32  chr20    2947322        3194810     NR_038395     UBOX5-AS1
34  chr22   32468058       32602235     NM_000343        SLC5A1
35  chr22   32468058       32602235  NM_001010859      C22orf42
36  chr22   32468058       32602235  NM_001098527         RFPL2
41  chr22   32468058       32602235     NR_040114       AP1B1P1
42   chr4  118836892      120248088     NM_000134         FABP2
43   chr4  118836892      120248088  NM_001001701        C4orf3
44   chr4  118836892      120248088  NM_001128934        SYNPO2
48   chr4  118836892      120248088  NM_001318066        SEC24D
49   chr4  118836892      120248088     NM_003619        PRSS12
50   chr4  118836892      120248088     NM_004784         NDST3
51   chr4  118836892      120248088     NM_016599         MYOZ2
52   chr4  118836892      120248088     NM_019050         USP53
53   chr4  118836892      120248088     NM_020961       METTL14
54   chr4  118836892      120248088     NR_002963       SNORA24
55   chr4  118836892      120248088     NR_003135      CEP170P1
56   chr4  118836892      120248088     NR_003584         SNHG8
57   chr4  118836892      120248088     NR_103825     LOC729218
59   chr4  118836892      120248088     NR_125930  LOC101929741
60   chr4  118836892      120248088     NR_125931  LOC101929762,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143524552      143862224  NM_001123068       PPIAL4G
1    chr1  143524552      143862224     NR_104014     LINC01138
2    chr1  143524552      143862224     NR_106967       MIR6077
3    chr1  143524552      143862224     NR_111930  LOC100132057
4   chr16   16400927       16530896  NM_001282511        NPIPA8
5   chr16   16400927       16530896     NR_036141     MIR3180-1
6   chr16   16400927       16530896     NR_036142     MIR3180-2
7   chr16   16400927       16530896     NR_036447        PKD1P1
8   chr16   16400927       16530896     NR_103772  LOC100288162
9   chr16   16400927       16530896     NR_106766     MIR6511A1
10  chr16   16400927       16530896     NR_106971     MIR6511A4
11  chr16   16400927       16530896     NR_107060     MIR6770-2
12  chr16   22216866       22320938  NM_001258033        POLR3E
13  chr16   22216866       22320938     NM_013302         EEF2K,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30266518       30502467  NM_001282472       GOLGA8J
1   chr15   30266518       30502467     NR_026771  DKFZP434L187
2   chr15   30266518       30502467     NR_026859        ULK4P3
3   chr15   30266518       30502467     NR_033933       GOLGA8T
4   chr16   18530594       18961983  NM_001004060         NOMO2
5   chr16   18530594       18961983     NM_001019        RPS15A
6   chr16   18530594       18961983  NM_001313858       ARL6IP1
7   chr16   18530594       18961983     NM_015092          SMG1
9   chr16   18530594       18961983     NR_003569       ABCC6P1
10  chr20   14527464       14908270     NM_080676       MACROD2
11  chr20   14527464       14908270     NR_037841   MACROD2-AS1
13  chr20   14527464       14908270     NR_104193   MACROD2-IT1
14  chr22   17256537       17389377     NM_175878          XKR3
15  chr22   17256537       17389377     NR_003607       HSFY1P1
16   chr4  169249067      169362863  NM_001012967        DDX60L
18   chr7  110728880      110841763  NM_001099658         LRRN3
19   chr7  110728880      110841763  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   58451505       59318390     NR_037490       MIR3924
1   chr10  117394885      117611149     NM_207303        ATRNL1
2   chr14   21768605       21892109  NM_001170629          CHD8
3   chr14   21768605       21892109     NM_007192       SUPT16H
4   chr14   21768605       21892109     NM_020366       RPGRIP1
6   chr14   21768605       21892109     NR_002916        SNORD8
7   chr14   21768605       21892109     NR_003029        SNORD9
8   chr14   78341497       79413756  NM_001142545         ADCK1
9   chr14   78341497       79413756     NM_004796         NRXN3
11  chr21   30088706       31712662     NM_000830         GRIK1
12  chr21   30088706       31712662  NM_001077711     KRTAP27-1
13  chr21   30088706       31712662  NM_001085455     KRTAP24-1
14  chr21   30088706       31712662  NM_001128598     KRTAP25-1
15  chr21   30088706       31712662     NM_001186         BACH1
16  chr21   30088706       31712662  NM_001286619      MAP3K7CL
22  chr21   30088706       31712662  NM_001320724        RWDD2B
23  chr21   30088706       31712662  NM_001320766          LTN1
24  chr21   30088706       31712662     NM_006447         USP16
25  chr21   30088706       31712662     NM_006585          CCT8
26  chr21   30088706       31712662     NM_012131        CLDN17
27  chr21   30088706       31712662     NM_013240        N6AMT1
32  chr21   30088706       31712662     NM_199328         CLDN8
33  chr21   30088706       31712662     NM_203405     KRTAP26-1
35  chr21   30088706       31712662     NR_027021     GRIK1-AS1
36  chr21   30088706       31712662     NR_027072     LINC00189
38  chr21   30088706       31712662     NR_033368     GRIK1-AS2
39  chr21   30088706       31712662     NR_038855     LINC00307
40  chr21   30088706       31712662     NR_046564     BACH1-IT2
42   chr4   86110592       87707382  NM_001025616      ARHGAP24
44   chr4   86110592       87707382  NM_001318067        MAPK10
49   chr4   86110592       87707382     NM_006264        PTPN13
51   chr4   86110592       87707382     NR_039656       MIR4451
52   chr4   86110592       87707382     NR_039657       MIR4452
53   chr4   86110592       87707382     NR_110879  LOC101929064
54   chr7   63968083       64614993  NM_001007253        ERV3-1
55   chr7   63968083       64614993  NM_001130022        ZNF680
56   chr7   63968083       64614993  NM_001160183        ZNF138
57   chr7   63968083       64614993  NM_001282360        ZNF107
58   chr7   63968083       64614993     NM_015852        ZNF117
59   chr7   63968083       64614993     NM_021148        ZNF273
61   chr7   63968083       64614993     NR_033245     LOC641746
62   chr7   63968083       64614993     NR_033416        CCT6P3
64   chr7   63968083       64614993     NR_077227  LOC100128885
66   chr7   63968083       64614993     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr20   14772853       14920135  NM_080676      MACROD2
1  chr20   14772853       14920135  NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  134008554      134233457  NM_001098637        PWWP2B
1   chr10  134008554      134233457  NM_001143757        LRRC27
4   chr10  134008554      134233457  NM_001318878        STK32C
9   chr10  134008554      134233457     NM_006426        DPYSL4
13  chr16   18162136       18673349  NM_001004060         NOMO2
14  chr16   18162136       18673349  NM_001282511        NPIPA8
15  chr16   18162136       18673349     NR_003569       ABCC6P1
16  chr16   18162136       18673349     NR_036140     MIR3179-1
17  chr16   18162136       18673349     NR_036142     MIR3180-2
18  chr16   18162136       18673349     NR_036144     MIR3180-3
19  chr16   18162136       18673349     NR_037442     MIR3670-1
20  chr16   18162136       18673349     NR_103772  LOC100288162
21  chr16   18162136       18673349     NR_106971     MIR6511A4
22  chr16   18162136       18673349     NR_107060     MIR6770-2
23   chr3  105267261      105421839  NM_001243281         ALCAM
24   chr3  105267261      105421839  NM_001321786          CBLB
31   chr9   28552808       28658148  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13  113066690      113172083  NM_001286278       TUBGCP3
2   chr13  113066690      113172083     NM_145248        SPACA7
3   chr14   21794890       22005537  NM_001163380         RAB2B
4   chr14   21794890       22005537  NM_001170629          CHD8
5   chr14   21794890       22005537  NM_001303523          TOX4
6   chr14   21794890       22005537     NM_007192       SUPT16H
7   chr14   21794890       22005537     NM_019852        METTL3
8   chr14   21794890       22005537     NM_020366       RPGRIP1
11  chr14   21794890       22005537     NR_002916        SNORD8
12  chr14   21794890       22005537     NR_003029        SNORD9
13  chr14   21794890       22005537     NR_111966         SALL2
15  chr14   81699128       82204759  NM_001244984         SEL1L
16  chr14   81699128       82204759  NM_001256430         STON2
19  chr14   81699128       82204759     NR_109999  LOC100506700
20  chr14   81699128       82204759     NR_110074     LINC01467
21  chr18   61784537       62051478     NR_027245     LINC00305
22  chr18   61784537       62051478     NR_033881     LOC284294
23  chr18   61784537       62051478     NR_033983     LINC01538
24   chr2  242463796      242685374  NM_001164356         THAP4
25   chr2  242463796      242685374  NM_001165031         DTYMK
26   chr2  242463796      242685374  NM_001287249        D2HGDH
27   chr2  242463796      242685374  NM_001330161          ING5
31   chr2  242463796      242685374     NM_032515           BOK
32   chr2  242463796      242685374     NM_178326         ATG4B
33   chr2  242463796      242685374     NR_033346       BOK-AS1
34   chr9   25521237       26938595  NM_001004125         TUSC1
35   chr9   25521237       26938595  NM_001004352  LOC100506422
36   chr9   25521237       26938595  NM_001031689          PLAA
37   chr9   25521237       26938595  NM_001167575         CAAP1
39   chr9   25521237       26938595     NR_121604     LINC01241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18311974       18776928  NM_001004060         NOMO2
1   chr16   18311974       18776928  NM_001282511        NPIPA8
2   chr16   18311974       18776928     NR_003569       ABCC6P1
3   chr16   18311974       18776928     NR_036140     MIR3179-1
4   chr16   18311974       18776928     NR_036142     MIR3180-2
5   chr16   18311974       18776928     NR_036144     MIR3180-3
6   chr16   18311974       18776928     NR_037442     MIR3670-1
7   chr16   18311974       18776928     NR_103772  LOC100288162
8   chr16   18311974       18776928     NR_106971     MIR6511A4
9   chr16   18311974       18776928     NR_107060     MIR6770-2
10   chr7   64056383       64189633  NM_001282360        ZNF107
11   chr7   64056383       64189633     NR_077227  LOC100128885
13   chr7   64056383       64189633     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21946642       22056175  NM_001005465        OR10G3
1   chr14   21946642       22056175  NM_001303523          TOX4
2   chr14   21946642       22056175     NM_019852        METTL3
3   chr14   21946642       22056175     NR_111966         SALL2
5   chr16   14967677       15093642  NM_001285445        PDXDC1
11  chr16   14967677       15093642     NM_006985        NPIPA1
12  chr16   14967677       15093642     NM_014287         NOMO1
13  chr16   14967677       15093642     NR_036140     MIR3179-1
14  chr16   14967677       15093642     NR_036141     MIR3180-1
15  chr16   14967677       15093642     NR_036142     MIR3180-2
16  chr16   14967677       15093642     NR_103772  LOC100288162
17  chr16   14967677       15093642     NR_106970     MIR6511A3
18  chr16   14967677       15093642     NR_107060     MIR6770-2
19  chr16   14967677       15093642     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16401424       17067245  NM_001282511        NPIPA8
1   chr16   16401424       17067245     NR_036141     MIR3180-1
2   chr16   16401424       17067245     NR_036142     MIR3180-2
3   chr16   16401424       17067245     NR_036447        PKD1P1
4   chr16   16401424       17067245     NR_103772  LOC100288162
5   chr16   16401424       17067245     NR_106766     MIR6511A1
6   chr16   16401424       17067245     NR_106971     MIR6511A4
7   chr16   16401424       17067245     NR_107060     MIR6770-2
8   chr22   20109323       21212814     NM_000185      SERPIND1
9   chr22   20109323       21212814  NM_001242313      TMEM191B
10  chr22   20109323       21212814  NM_001243537       CCDC188
11  chr22   20109323       21212814  NM_001256523         ZNF74
12  chr22   20109323       21212814  NM_001278639        RANBP1
15  chr22   20109323       21212814  NM_001293236         MED15
17  chr22   20109323       21212814     NM_013373        ZDHHC8
18  chr22   20109323       21212814     NM_015672        RIMBP3
19  chr22   20109323       21212814     NM_023004         RTN4R
20  chr22   20109323       21212814     NM_033257        DGCR6L
21  chr22   20109323       21212814     NM_058004         PI4KA
22  chr22   20109323       21212814     NM_153334        SCARF2
23  chr22   20109323       21212814     NR_003563       PI4KAP1
24  chr22   20109323       21212814     NR_024592     POM121L4P
25  chr22   20109323       21212814     NR_026815      TMEM191A
26  chr22   20109323       21212814     NR_026919     LINC00896
27  chr22   20109323       21212814     NR_031618       MIR1286
28  chr22   20109323       21212814     NR_033825        KLHL22
29  chr22   20109323       21212814     NR_038460     LOC284865
30  chr22   20109323       21212814     NR_136560       FAM230A
31  chr22   20109323       21212814     NR_136569     LOC729461
32  chr22   20109323       21212814     NR_136572  LOC101927859
33   chr4   69300896       69564585     NM_001076       UGT2B15
34   chr4   69300896       69564585     NM_001077       UGT2B17
35   chr4   69300896       69564585     NM_014058     TMPRSS11E,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   12759055       13106918  NM_001009611   PRAMEF4
1   chr1   12759055       13106918  NM_001010889   PRAMEF6
2   chr1   12759055       13106918  NM_001010890   PRAMEF9
3   chr1   12759055       13106918  NM_001012276   PRAMEF8
4   chr1   12759055       13106918  NM_001013631  HNRNPCL1
5   chr1   12759055       13106918  NM_001080830  PRAMEF12
6   chr1   12759055       13106918  NM_001099850  PRAMEF18
7   chr1   12759055       13106918  NM_001100631  PRAMEF22
8   chr1   12759055       13106918  NM_001103170   AADACL3
9   chr1   12759055       13106918  NM_001146181  HNRNPCL3
10  chr1   12759055       13106918  NM_001146344  PRAMEF11
11  chr1   12759055       13106918  NM_001294139   PRAMEF1
12  chr1   12759055       13106918  NM_001302551  HNRNPCL4
13  chr1   12759055       13106918  NM_001306072  PRAMEF26
14  chr1   12759055       13106918  NM_001310134  PRAMEF25
16  chr1   12759055       13106918     NM_023014   PRAMEF2
17  chr1   12759055       13106918     NM_152290  C1orf158
18  chr2  110164880      110337287  NM_001099289    SH3RF3
19  chr2  110164880      110337287  NM_001321504    SEPT10
21  chr6  144724043      144835184     NM_007124      UTRN
22  chr6  144724043      144835184     NR_132778   SNORA98
23  chr7   75049357       75166298  NM_001099415   POM121C
24  chr7   75049357       75166298  NM_001243198      HIP1
25  chr7   75049357       75166298  NM_001306141    SPDYE5
26  chr7   75049357       75166298     NR_028059    PMS2P3
27  chr9   28230407       28349636  NM_001258282    LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27116048       27238834  NM_001080406      C12orf71
1   chr12   27116048       27238834  NM_001171887      FGFR1OP2
2   chr12   27116048       27238834  NM_001271811         MED21
3   chr12   27116048       27238834     NM_016551        TM7SF3
4   chr14   21748068       21891450  NM_001170629          CHD8
5   chr14   21748068       21891450     NM_007192       SUPT16H
6   chr14   21748068       21891450     NM_020366       RPGRIP1
8   chr14   21748068       21891450     NR_002916        SNORD8
9   chr14   21748068       21891450     NR_003029        SNORD9
10  chr18   24679268       25290379  NM_001256316         CHST9
11  chr18   24679268       25290379     NR_134589  LOC105372038
12   chr7  121670712      122050649  NM_001024613         FEZF1
13   chr7  121670712      122050649  NM_001206838        PTPRZ1
14   chr7  121670712      122050649     NM_005763          AASS
15   chr7  121670712      122050649     NM_017954        CADPS2
16   chr7  121670712      122050649     NR_036484     FEZF1-AS1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr16   29489487       29646142     NR_049833    MIR3680-2
1  chr16   29489487       29646142     NR_135305       SMG1P2
3  chr20   14616927       14964848     NM_080676      MACROD2
4  chr20   14616927       14964848     NR_037841  MACROD2-AS1
6   chr3   60345785       60492720  NM_001320899         FHIT
7   chr7    2728581        2860908  NM_001282440        GNA12
9   chr7    2728581        2860908  NM_001284355         AMZ1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr13   95293408       95488968     NM_007084         SOX21
1  chr13   95293408       95488968     NR_046514     SOX21-AS1
2  chr13   95293408       95488968     NR_110754  LOC101927284
3  chr13   95293408       95488968     NR_120417  LOC101927248
4  chr20   14871111       15120108     NM_080676       MACROD2
5  chr20   14871111       15120108     NR_037841   MACROD2-AS1
7   chr3  116117348      116420089  NM_001318915         LSAMP,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  131447117      131606369  NM_001048209           NTM
1   chr11  131447117      131606369     NR_126159       NTM-AS1
2   chr13   88029403       89560009     NM_015567       SLITRK5
3   chr13   88029403       89560009     NR_033829     MIR4500HG
4   chr13   88029403       89560009     NR_039722       MIR4500
5   chr13   88029403       89560009     NR_047021     LINC00433
6   chr13   88029403       89560009     NR_047490     LINC00560
7   chr13   88029403       89560009     NR_104059     LINC00397
8   chr13   88029403       89560009     NR_131919  LOC105370306
9   chr15   28770691       29134320  NM_001282468       GOLGA8M
10  chr15   28770691       29134320     NR_026589       WHAMMP2
11  chr15   28770691       29134320     NR_033351       GOLGA8F
12  chr15   28770691       29134320     NR_033353       GOLGA8G
13  chr15   28770691       29134320     NR_036443       HERC2P9
14  chr15   28770691       29134320     NR_036475  LOC100289656
15  chr15   28770691       29134320     NR_037599     PDCD6IPP2
16  chr15   28770691       29134320     NR_047567     GOLGA6L7P
17  chr17   78170479       78683823     NM_000199          SGSH
18  chr17   78170479       78683823  NM_001164637         ENDOV
20  chr17   78170479       78683823  NM_001166349      SLC26A11
21  chr17   78170479       78683823  NM_001256071        RNF213
22  chr17   78170479       78683823  NM_001257970        CARD14
23  chr17   78170479       78683823     NM_002522         NPTX1
24  chr17   78170479       78683823     NM_020761         RPTOR
28  chr17   78170479       78683823     NR_029376  LOC100294362
29  chr17   78170479       78683823     NR_039883       MIR4730
31  chr20   14649171       14778162     NM_080676       MACROD2
32   chr7   75859969       76447721  NM_001102594          DTX2
34   chr7   75859969       76447721  NM_001110199         SRRM3
35   chr7   75859969       76447721  NM_001110354           ZP3
36   chr7   75859969       76447721     NM_001540         HSPB1
38   chr7   75859969       76447721     NM_012479         YWHAG
39   chr7   75859969       76447721     NM_030570         UPK3B
40   chr7   75859969       76447721     NM_080744         SSC4D
41   chr7   75859969       76447721     NM_152992        POMZP3
42   chr7   75859969       76447721     NR_003262        FDPSP2
43   chr7   75859969       76447721     NR_029411  LOC100133091,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4843965        4962413  NM_001004749        OR51A7
1   chr11    4843965        4962413  NM_001004758        OR51S1
2   chr11    4843965        4962413  NM_001004759        OR51T1
3   chr11    4843965        4962413  NM_001005237        OR51G1
4   chr11    4843965        4962413  NM_001005238        OR51G2
5    chr2   52196915       52334598     NR_135237     LOC730100
6   chr21   13428937       15007936     NM_174981         POTED
7   chr21   13428937       15007936     NR_026916    ANKRD30BP2
8   chr21   13428937       15007936     NR_036164     MIR3156-3
9   chr21   13428937       15007936     NR_110544  LOC102724188
10  chr22   18983932       19244399  NM_001184781         DGCR2
11  chr22   18983932       19244399  NM_001256534       SLC25A1
12  chr22   18983932       19244399     NM_001835        CLTCL1
13  chr22   18983932       19244399     NM_005315          GSC2
15  chr22   18983932       19244399     NM_022719        DGCR14
16  chr22   18983932       19244399     NM_053006         TSSK2
17  chr22   18983932       19244399     NR_024157        DGCR11
18  chr22   18983932       19244399     NR_024159         DGCR9
19  chr22   18983932       19244399     NR_026651        DGCR10
20  chr22   18983932       19244399     NR_103767     LINC01311
21  chr22   18983932       19244399     NR_110533         DGCR5,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21882351       22347305  NM_001001912      OR4E2
1   chr14   21882351       22347305  NM_001005465     OR10G3
2   chr14   21882351       22347305  NM_001005466     OR10G2
3   chr14   21882351       22347305  NM_001163380      RAB2B
4   chr14   21882351       22347305  NM_001170629       CHD8
5   chr14   21882351       22347305  NM_001303523       TOX4
6   chr14   21882351       22347305  NM_001317107      OR4E1
7   chr14   21882351       22347305     NM_019852     METTL3
10  chr14   21882351       22347305     NR_111966      SALL2
12  chr16   18482040       18627909  NM_001004060      NOMO2
13  chr16   18482040       18627909     NR_003569    ABCC6P1
14  chr16   18482040       18627909     NR_036140  MIR3179-1
15  chr16   18482040       18627909     NR_036142  MIR3180-2
16  chr16   18482040       18627909     NR_036144  MIR3180-3
17  chr16   18482040       18627909     NR_037442  MIR3670-1
18  chr16   61074270       61365128     NR_039624    MIR4426,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   46926749       47057717  NM_001286761        RUBCNL
2   chr13   46926749       47057717     NR_120426     LINC01198
3   chr14   21772905       21879078  NM_001170629          CHD8
4   chr14   21772905       21879078     NM_007192       SUPT16H
5   chr14   21772905       21879078     NM_020366       RPGRIP1
7   chr14   21772905       21879078     NR_002916        SNORD8
8   chr14   21772905       21879078     NR_003029        SNORD9
9    chr3  189609778      191883918  NM_001083308         PYDC2
10   chr3  189609778      191883918  NM_001134418          P3H2
11   chr3  189609778      191883918  NM_001146686          GMNC
12   chr3  189609778      191883918  NM_001167928        IL1RAP
15   chr3  189609778      191883918  NM_001329148          TP63
18   chr3  189609778      191883918     NM_004113         FGF12
19   chr3  189609778      191883918     NM_006580        CLDN16
22   chr3  189609778      191883918     NM_021101         CLDN1
23   chr3  189609778      191883918     NM_174908        CCDC50
24   chr3  189609778      191883918     NM_198152         UTS2B
25   chr3  189609778      191883918     NM_198184          OSTN
26   chr3  189609778      191883918     NM_207316       TMEM207
27   chr3  189609778      191883918     NR_024343        SNAR-I
28   chr3  189609778      191883918     NR_120606    LINCR-0002
29   chr3  189609778      191883918     NR_126419      P3H2-AS1
30   chr3  189609778      191883918     NR_133663      OSTN-AS1
31   chr4   29785152       32329427  NM_001173523         PCDH7
34   chr4   29785152       32329427     NR_125935  LOC102723778
35   chr4   29785152       32329427     NR_125936  LOC102723828
36   chr4   29785152       32329427     NR_134682  LOC105377651
37   chr5  175380794      176676072  NM_001079684      KIAA1191
38   chr5  175380794      176676072  NM_001099408       EIF4E1B
39   chr5  175380794      176676072  NM_001171976         CDHR2
40   chr5  175380794      176676072  NM_001256539         NOP16
41   chr5  175380794      176676072  NM_001265615       FAM153B
42   chr5  175380794      176676072  NM_001308196         SIMC1
44   chr5  175380794      176676072  NM_001308221        ZNF346
46   chr5  175380794      176676072  NM_001317948         ARL10
47   chr5  175380794      176676072  NM_001317961         UIMC1
48   chr5  175380794      176676072     NM_002011         FGFR4
49   chr5  175380794      176676072     NM_002115           HK3
50   chr5  175380794      176676072     NM_003085          SNCB
51   chr5  175380794      176676072     NM_014613          FAF2
52   chr5  175380794      176676072     NM_014901         RNF44
55   chr5  175380794      176676072     NM_022455          NSD1
57   chr5  175380794      176676072     NM_032361         THOC3
58   chr5  175380794      176676072     NM_052899        GPRIN1
59   chr5  175380794      176676072     NM_130465       TSPAN17
60   chr5  175380794      176676072     NM_133369         UNC5A
61   chr5  175380794      176676072     NM_138820        HIGD2A
64   chr5  175380794      176676072     NR_031569       MIR1271
65   chr5  175380794      176676072     NR_036239       MIR4281
66   chr5  175380794      176676072     NR_036494     LOC643201
67   chr5  175380794      176676072     NR_038402  LOC100507387
68   chr5  175380794      176676072     NR_045724          CLTB
69   chr5  175380794      176676072     NR_103794  LOC100996385
70   chr5  175380794      176676072     NR_108030     LINC01574,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10    5157164        5561446  NM_001047160        NET1
1   chr10    5157164        5561446     NM_001818      AKR1C4
2   chr10    5157164        5561446     NM_017422      CALML5
3   chr10    5157164        5561446     NM_024803      TUBAL3
4   chr10    5157164        5561446     NM_053049        UCN3
5   chr10    5157164        5561446     NR_027916     AKR1C8P
7   chr10    5157164        5561446     NR_120496  CALML3-AS1
8   chr10   88955526       89126537  NM_001099338      NUTM2A
9   chr10   88955526       89126537     NR_024397  NUTM2A-AS1
10  chr10   88955526       89126537     NR_029408   LINC00863
11  chr10   88955526       89126537     NR_075100      NUTM2D
13  chr10  135253182      135438550     NM_000773      CYP2E1
14  chr10  135253182      135438550  NM_001143763       SYCE1
17  chr10  135253182      135438550     NR_002934      SCART1
18  chr10  135253182      135438550     NR_033789      SPRNP1
19  chr11  134231264      134396995     NM_054025      B3GAT1
20  chr11  134231264      134396995     NM_138342      GLB1L2
21  chr11  134231264      134396995     NR_033852   LOC283177
22  chr14   21815784       21936164  NM_001163380       RAB2B
23  chr14   21815784       21936164  NM_001170629        CHD8
24  chr14   21815784       21936164     NM_007192     SUPT16H
25  chr14   21815784       21936164     NM_020366     RPGRIP1
28  chr14   21815784       21936164     NR_002916      SNORD8
29  chr14   21815784       21936164     NR_003029      SNORD9
30   chr2  235240664      235511615  NM_001282431       ARL4C,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  145290609      145490425  NM_001039888       ANKRD34A
1    chr1  145290609      145490425  NM_001277444          NBPF9
2    chr1  145290609      145490425  NM_001278267         NBPF20
3    chr1  145290609      145490425  NM_001302371         NBPF10
4    chr1  145290609      145490425  NM_001313972          TXNIP
6    chr1  145290609      145490425     NM_032305        POLR3GL
7    chr1  145290609      145490425     NM_145277           HFE2
8    chr1  145290609      145490425     NM_153713          LIX1L
9    chr1  145290609      145490425     NR_104217        NBPF25P
10   chr1  145290609      145490425     NR_125967   LOC101928979
11  chr11   30196831       30867320     NM_000510           FSHB
12  chr11   30196831       30867320  NM_001145399         MPPED2
14  chr11   30196831       30867320     NM_152316        ARL14EP
15  chr15   82851040       83071344  NM_001164465      GOLGA6L10
16  chr15   82851040       83071344  NM_001291420       GOLGA6L9
18  chr15   82851040       83071344     NR_004847       UBE2Q2P2
19  chr15   82851040       83071344     NR_026811      GOLGA2P10
20  chr15   82851040       83071344     NR_045529      ADAMTS7P1
21  chr15   82851040       83071344     NR_102747      LOC727751
22  chr15   82851040       83071344     NR_111962     GOLGA6L17P
23  chr15   82851040       83071344     NR_120378   LOC102724034
24  chr19    9342010        9502278  NM_001079935         OR7E24
25  chr19    9342010        9502278  NM_001172650  ZNF559-ZNF177
26  chr19    9342010        9502278  NM_001172651         ZNF177
27  chr19    9342010        9502278  NM_001202406         ZNF559
31  chr19    9342010        9502278     NM_198535         ZNF699
32   chr2  110131156      110272205  NM_001099289         SH3RF3
33  chr22   17203506       17977583  NM_001037814           GAB4
34  chr22   17203506       17977583  NM_001163079          CECR6
35  chr22   17203506       17977583  NM_001282227          CECR1
37  chr22   17203506       17977583  NM_001289905         IL17RA
38  chr22   17203506       17977583  NM_001290046          CECR2
40  chr22   17203506       17977583     NM_017829          CECR5
43  chr22   17203506       17977583     NM_175878           XKR3
45  chr22   17203506       17977583     NR_003607        HSFY1P1
46  chr22   17203506       17977583     NR_015352          CECR7
47  chr22   17203506       17977583     NR_024482      CECR5-AS1
48  chr22   17203506       17977583     NR_038398          CECR3
49  chr22   17203506       17977583     NR_103793   LOC100996342
50  chr22   17203506       17977583     NR_134584   LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name        gene_name
0   chr14   21865977       22122150  NM_001005465           OR10G3
1   chr14   21865977       22122150  NM_001005466           OR10G2
2   chr14   21865977       22122150  NM_001163380            RAB2B
3   chr14   21865977       22122150  NM_001170629             CHD8
4   chr14   21865977       22122150  NM_001303523             TOX4
5   chr14   21865977       22122150     NM_019852           METTL3
8   chr14   21865977       22122150     NR_111966            SALL2
10  chr17    5576252        6926610     NM_000697           ALOX12
11  chr17    5576252        6926610  NM_001105520        C17orf100
12  chr17    5576252        6926610  NM_001143838          SLC13A5
13  chr17    5576252        6926610  NM_001195228           FAM64A
14  chr17    5576252        6926610  NM_001285402            AIPL1
17  chr17    5576252        6926610     NM_014804         KIAA0753
18  chr17    5576252        6926610     NM_015253            WSCD1
19  chr17    5576252        6926610     NM_016060            MED31
20  chr17    5576252        6926610     NM_031220          PITPNM3
21  chr17    5576252        6926610     NM_032731          TXNDC17
22  chr17    5576252        6926610     NM_053285            TEKT1
23  chr17    5576252        6926610     NM_153230           FBXO39
24  chr17    5576252        6926610     NM_174893         C17orf49
25  chr17    5576252        6926610     NM_181844            BCL6B
26  chr17    5576252        6926610     NR_002710         ALOX12P2
27  chr17    5576252        6926610     NR_029712           MIR195
28  chr17    5576252        6926610     NR_030178           MIR497
29  chr17    5576252        6926610     NR_037716           RNASEK
30  chr17    5576252        6926610     NR_037717  RNASEK-C17orf49
31  chr17    5576252        6926610     NR_038310         MIR497HG
32  chr17    5576252        6926610     NR_039745        MIR4520-1
33  chr17    5576252        6926610     NR_039874        MIR4520-2
34  chr17    5576252        6926610     NR_040000        LOC339166
35  chr17    5576252        6926610     NR_040089       ALOX12-AS1
36  chr17    5576252        6926610     NR_045985         ALOX15P1
37  chr17    5576252        6926610     NR_046398             XAF1
39   chr5   59630967       59733070  NM_001165899            PDE4D
40   chr7    6858628        7044747     NM_198097            CCZ1B
41   chr8   50539271       51591549  NM_001287813            SNTG1
46   chr9    6560690        6777909     NM_000170             GLDC
47   chr9    6560690        6777909  NM_001146695            KDM4C
52   chr9   28153209       28254667  NM_001258282           LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  165198175      166075630     NM_000696       ALDH9A1
1    chr1  165198175      166075630  NM_001005214        LRRC52
2    chr1  165198175      166075630  NM_001017961        FAM78B
3    chr1  165198175      166075630  NM_001174069         LMX1A
4    chr1  165198175      166075630  NM_001256571          RXRG
6    chr1  165198175      166075630     NM_004528         MGST3
8    chr1  165198175      166075630     NM_012474          UCK2
9    chr1  165198175      166075630     NM_019026         TMCO1
11   chr1  165198175      166075630     NR_026744     LOC400794
13   chr1  165198175      166075630     NR_036683     LOC440700
14   chr1  165198175      166075630     NR_037431       MIR3658
15   chr1  165198175      166075630     NR_125374  LOC100147773
16  chr14   21847687       21956851  NM_001163380         RAB2B
17  chr14   21847687       21956851  NM_001170629          CHD8
18  chr14   21847687       21956851  NM_001303523          TOX4
19  chr14   21847687       21956851     NM_007192       SUPT16H
22  chr14   21847687       21956851     NR_002916        SNORD8
23  chr14   21847687       21956851     NR_003029        SNORD9
24  chr15   28638215       28944363  NM_001282468       GOLGA8M
25  chr15   28638215       28944363     NR_033351       GOLGA8F
26  chr15   28638215       28944363     NR_033353       GOLGA8G
27  chr15   28638215       28944363     NR_036443       HERC2P9
28  chr15   28638215       28944363     NR_039734     MIR4509-3
30  chr16   16453173       16554939  NM_001282511        NPIPA8
31  chr16   16453173       16554939     NR_106971     MIR6511A4
32   chr4   98339502       98473679     NR_102713     STPG2-AS1
33   chr9   41901325       42006695     NR_003670        FGF7P3
34   chr9   41901325       42006695     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21743776       21883277  NM_001170629          CHD8
1   chr14   21743776       21883277     NM_007192       SUPT16H
2   chr14   21743776       21883277     NM_020366       RPGRIP1
4   chr14   21743776       21883277     NR_002916        SNORD8
5   chr14   21743776       21883277     NR_003029        SNORD9
6   chr16   83996066       84454373  NM_001080442       SLC38A8
7   chr16   83996066       84454373  NM_001145400         ADAD2
8   chr16   83996066       84454373  NM_001146051         HSDL1
9   chr16   83996066       84454373  NM_001243156         TAF1C
10  chr16   83996066       84454373  NM_001282466         WFDC1
11  chr16   83996066       84454373  NM_001286527        ATP2C2
13  chr16   83996066       84454373  NM_001318756        DNAAF1
14  chr16   83996066       84454373     NM_003791        MBTPS1
15  chr16   83996066       84454373     NM_019065        NECAB2
16  chr16   83996066       84454373     NM_172347         KCNG4
18  chr16   83996066       84454373     NM_182981        OSGIN1
19   chr2   35670374       36236247     NR_039629      MIR548AD
20   chr6    5179344        6664529     NM_000129         F13A1
21   chr6    5179344        6664529  NM_001164840         LYRM4
22   chr6    5179344        6664529  NM_001278710          NRN1
25   chr6    5179344        6664529  NM_001318872         FARS2
26   chr6    5179344        6664529     NM_004271          LY86
30   chr6    5179344        6664529     NR_026970      LY86-AS1
31   chr6    5179344        6664529     NR_049863       MIR5683
32   chr6    5179344        6664529     NR_107007       MIR7853
33   chr6    5179344        6664529     NR_110842  LOC101927950
34   chr6    5179344        6664529     NR_125846  LOC101927972
35   chr6    5179344        6664529     NR_126015     LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143149113      143497955     NR_110761  LOC102723769
1   chr14   21903172       22036048  NM_001163380         RAB2B
2   chr14   21903172       22036048  NM_001303523          TOX4
3   chr14   21903172       22036048     NM_019852        METTL3
4   chr14   21903172       22036048     NM_020920          CHD8
6   chr14   21903172       22036048     NR_111966         SALL2
8   chr16   18278051       18595891  NM_001004060         NOMO2
9   chr16   18278051       18595891  NM_001282511        NPIPA8
10  chr16   18278051       18595891     NR_003569       ABCC6P1
11  chr16   18278051       18595891     NR_036140     MIR3179-1
12  chr16   18278051       18595891     NR_036142     MIR3180-2
13  chr16   18278051       18595891     NR_036144     MIR3180-3
14  chr16   18278051       18595891     NR_037442     MIR3670-1
15  chr16   18278051       18595891     NR_103772  LOC100288162
16  chr16   18278051       18595891     NR_106971     MIR6511A4
17  chr16   18278051       18595891     NR_107060     MIR6770-2
18   chr6  131015855      131207809  NM_001135554       EPB41L2
19   chr6  131015855      131207809  NM_001195597         SMLR1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143498593      143902811  NM_001123068       PPIAL4G
1   chr1  143498593      143902811  NM_001287385        FAM72C
2   chr1  143498593      143902811  NM_001345942        FAM72D
5   chr1  143498593      143902811     NR_104014     LINC01138
6   chr1  143498593      143902811     NR_106967       MIR6077
7   chr1  143498593      143902811     NR_111930  LOC100132057
9   chr4   66481856       67011320  NM_001281766         EPHA5
12  chr4   66481856       67011320     NR_034138     EPHA5-AS1
13  chr7  132758233      132933450  NM_001317178        CHCHD3
15  chr7  132758233      132933450     NR_133931  LOC105375512
16  chr8  111873608      111993988     NR_125417     LINC01608
17  chr9   67215447       67663418     NR_002817        AQP7P1
18  chr9   67215447       67663418     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   21763973       21900997  NM_001170629       CHD8
1  chr14   21763973       21900997     NM_007192    SUPT16H
2  chr14   21763973       21900997     NM_020366    RPGRIP1
4  chr14   21763973       21900997     NR_002916     SNORD8
5  chr14   21763973       21900997     NR_003029     SNORD9
6  chr16   16452470       16563407  NM_001282511     NPIPA8
7  chr16   16452470       16563407     NR_106971  MIR6511A4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143740273      143885548  NM_001123068       PPIAL4G
1    chr1  143740273      143885548     NR_104014     LINC01138
2   chr17      75821         385456  NM_001013672      C17orf97
3   chr17      75821         385456  NM_001190411        RPH3AL
4   chr17      75821         385456     NM_182705         RFLNB
5   chr17      75821         385456     NR_040011  LOC100506388
6   chr17      75821         385456     NR_136407  LOC105371430
7   chr20   14640335       14742344     NM_080676       MACROD2
8    chr5   26915329       27421030     NM_016279          CDH9
9    chr7  110484073      111556332  NM_001099658         LRRN3
10   chr7  110484073      111556332  NM_001244606        IMMP2L
11   chr7  110484073      111556332     NM_014705         DOCK4
13   chr7  110484073      111556332     NR_103806     DOCK4-AS1
14   chr9   30369374       30557810     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245017384      245471357  NM_001143943        EFCAB2
2    chr1  245017384      245471357     NM_004501        HNRNPU
3    chr1  245017384      245471357     NM_018012        KIF26B
5    chr1  245017384      245471357     NR_111907  LOC101928068
6    chr1  245017384      245471357     NR_132782      SNORA100
7   chr16   18433945       18609842  NM_001004060         NOMO2
8   chr16   18433945       18609842     NR_003569       ABCC6P1
9   chr16   18433945       18609842     NR_036140     MIR3179-1
10  chr16   18433945       18609842     NR_036142     MIR3180-2
11  chr16   18433945       18609842     NR_036144     MIR3180-3
12  chr16   18433945       18609842     NR_037442     MIR3670-1
13  chr16   18433945       18609842     NR_103772  LOC100288162
14  chr16   18433945       18609842     NR_106971     MIR6511A4
15  chr16   18433945       18609842     NR_107060     MIR6770-2
16  chr16   21665366       22289927  NM_001077180        METTL9
17  chr16   21665366       22289927  NM_001161683          OTOA
18  chr16   21665366       22289927  NM_001164579      C16orf52
20  chr16   21665366       22289927  NM_001310148        NPIPB4
21  chr16   21665366       22289927     NM_003366        UQCRC2
22  chr16   21665366       22289927     NM_013302         EEF2K
25  chr16   21665366       22289927     NM_173615         VWA3A
26  chr16   21665366       22289927     NM_173806         PDZD9
27  chr16   21665366       22289927     NR_003370        RRN3P1
28   chr4   72993659       73235709     NM_004885        NPFFR2
29   chr4   72993659       73235709     NM_014243       ADAMTS3
31   chr7   56992867       57106391     NR_036246     MIR4283-1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   14948273       15263335  NM_001018000          KAZN
4   chr15   28650981       29999294  NM_001130414         APBA2
5   chr15   28650981       29999294  NM_001282468       GOLGA8M
6   chr15   28650981       29999294  NM_001301025          TJP1
9   chr15   28650981       29999294     NM_015307      FAM189A1
10  chr15   28650981       29999294     NM_138704        NSMCE3
11  chr15   28650981       29999294     NR_026589       WHAMMP2
12  chr15   28650981       29999294     NR_033351       GOLGA8F
13  chr15   28650981       29999294     NR_033353       GOLGA8G
14  chr15   28650981       29999294     NR_036443       HERC2P9
15  chr15   28650981       29999294     NR_036475  LOC100289656
16  chr15   28650981       29999294     NR_037599     PDCD6IPP2
17  chr15   28650981       29999294     NR_039734     MIR4509-3
19  chr15   28650981       29999294     NR_047567     GOLGA6L7P
20  chr15   28650981       29999294     NR_135221  LOC100130111
21  chr15   30238255       30367229  NM_001301025          TJP1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10    2066292        2238915     NR_106720    MIR6072
1   chr11    4496200        5093607  NM_001001916     OR52J3
2   chr11    4496200        5093607  NM_001004137     OR52M1
3   chr11    4496200        5093607  NM_001004748     OR51A2
4   chr11    4496200        5093607  NM_001004749     OR51A7
5   chr11    4496200        5093607  NM_001004751     OR51D1
6   chr11    4496200        5093607  NM_001004752     OR51F1
7   chr11    4496200        5093607  NM_001004753     OR51F2
8   chr11    4496200        5093607  NM_001004755     OR51L1
9   chr11    4496200        5093607  NM_001004758     OR51S1
10  chr11    4496200        5093607  NM_001004759     OR51T1
11  chr11    4496200        5093607  NM_001005164     OR52E2
12  chr11    4496200        5093607  NM_001005169     OR52I1
13  chr11    4496200        5093607  NM_001005170     OR52I2
14  chr11    4496200        5093607  NM_001005171     OR52K1
15  chr11    4496200        5093607  NM_001005177     OR52R1
16  chr11    4496200        5093607  NM_001005237     OR51G1
17  chr11    4496200        5093607  NM_001005238     OR51G2
18  chr11    4496200        5093607  NM_001005329     OR51A4
19  chr11    4496200        5093607     NM_018073     TRIM68
20  chr11    4496200        5093607     NM_021801      MMP26
21  chr11    4496200        5093607     NM_030774     OR51E2
22  chr11    4496200        5093607     NM_144663   C11orf40
23  chr11    4496200        5093607     NM_152430     OR51E1
24  chr14   21872811       22021886  NM_001163380      RAB2B
25  chr14   21872811       22021886  NM_001170629       CHD8
26  chr14   21872811       22021886  NM_001303523       TOX4
27  chr14   21872811       22021886     NM_019852     METTL3
30  chr14   21872811       22021886     NR_111966      SALL2
32  chr14   40883487       41483690     NR_109757  LOC644919
34   chr7    6733223        6954938  NM_001099697   RSPH10B2
35   chr7    6733223        6954938     NM_006956      ZNF12
36   chr7    6733223        6954938     NM_198097      CCZ1B
37   chr7    6733223        6954938     NR_002217     PMS2CL,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   57721521       57872904  NM_001080156       ARHGAP9
2   chr12   57721521       57872904  NM_001160045          GLI1
5   chr12   57721521       57872904  NM_001330122        R3HDM2
6   chr12   57721521       57872904     NM_005538         INHBC
8   chr12   57721521       57872904     NM_031479         INHBE
10  chr16   18079264       18742283  NM_001004060         NOMO2
11  chr16   18079264       18742283  NM_001282511        NPIPA8
12  chr16   18079264       18742283     NR_003569       ABCC6P1
13  chr16   18079264       18742283     NR_036140     MIR3179-1
14  chr16   18079264       18742283     NR_036142     MIR3180-2
15  chr16   18079264       18742283     NR_036144     MIR3180-3
16  chr16   18079264       18742283     NR_037442     MIR3670-1
17  chr16   18079264       18742283     NR_103772  LOC100288162
18  chr16   18079264       18742283     NR_106971     MIR6511A4
19  chr16   18079264       18742283     NR_107060     MIR6770-2
20  chr17   14123964       14257700  NM_001007530        CDRT15
21  chr17   14123964       14257700     NM_006041      HS3ST3B1
22  chr17   14123964       14257700     NR_026880      MGC12916
23   chr3  174329690      174579301     NM_207015      NAALADL2
24   chr5  167279508      167512707  NM_001080428         TENM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143110510      144636209  NM_001123068       PPIAL4G
1    chr1  143110510      144636209  NM_001135789       PPIAL4C
2    chr1  143110510      144636209  NM_001277444         NBPF9
3    chr1  143110510      144636209  NM_001278267        NBPF20
4    chr1  143110510      144636209  NM_001287385        FAM72C
5    chr1  143110510      144636209  NM_001345942        FAM72D
9    chr1  143110510      144636209     NR_003242        PFN1P2
10   chr1  143110510      144636209     NR_024511     LINC00623
12   chr1  143110510      144636209     NR_102405         NBPF8
13   chr1  143110510      144636209     NR_104014     LINC01138
14   chr1  143110510      144636209     NR_106967       MIR6077
15   chr1  143110510      144636209     NR_110761  LOC102723769
16   chr1  143110510      144636209     NR_111930  LOC100132057
17   chr1  143110510      144636209     NR_111953     LINC00869
19  chr15   28566211       28725569     NM_004667         HERC2
20  chr15   28566211       28725569     NR_033351       GOLGA8F
21  chr15   28566211       28725569     NR_033353       GOLGA8G
22  chr15   28566211       28725569     NR_039734     MIR4509-3
23   chr4  169179563      169386919  NM_001012967        DDX60L
25   chr4  169179563      169386919     NM_017631         DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   19555203       19683922  NM_001267043         AEBP2
2   chr16   21421947       21554787     NM_130464        NPIPB3
3   chr16   21421947       21554787     NR_002594      SLC7A5P2
4   chr16   21421947       21554787     NR_024456  LOC100190986
5   chr16   21421947       21554787     NR_027155        SMG1P3
6   chr16   21421947       21554787     NR_049833     MIR3680-2
7   chr16   85244650       85396177     NR_038859     LINC00311
8   chr16   85244650       85396177     NR_049816       MIR5093
9    chr5    6159550        7320043  NM_001145161       UBE2QL1
10   chr5    6159550        7320043  NM_001171805         PAPD7
12   chr5    6159550        7320043  NM_001324322        SRD5A1
13   chr5    6159550        7320043     NM_032286         MED10
14   chr5    6159550        7320043     NR_024423     LINC01018
16   chr5    6159550        7320043     NR_028351      FLJ33360
17   chr5    6159550        7320043     NR_033906     LOC442132
18   chr5    6159550        7320043     NR_036242       MIR4278
19   chr5    6159550        7320043     NR_037947         NSUN2
20   chr5    6159550        7320043     NR_039659       MIR4454
21   chr5    6159550        7320043     NR_103771  LOC100505625
22   chr7  133234273      133968235     NM_021807         EXOC4
23   chr7  133234273      133968235     NM_144648         LRGUK
24   chr7  133234273      133968235     NR_120513  LOC101928861,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28815607       29121216  NM_001282468       GOLGA8M
1   chr15   28815607       29121216     NR_026589       WHAMMP2
2   chr15   28815607       29121216     NR_036443       HERC2P9
3   chr15   28815607       29121216     NR_036475  LOC100289656
4   chr15   28815607       29121216     NR_037599     PDCD6IPP2
5   chr15   28815607       29121216     NR_047567     GOLGA6L7P
6   chr15   59975563       60277134  NM_001320674         BNIP2
8   chr15   99916008      100099066  NM_001284400        LRRC28
10   chr2     930559        2601205  NM_001329844         MYT1L
17   chr2     930559        2601205     NM_012293          PXDN
19   chr2     930559        2601205     NM_018968         SNTG2
20   chr2     930559        2601205     NM_175719           TPO
22   chr2     930559        2601205     NR_024468     MYT1L-AS1
23   chr2     930559        2601205     NR_136151  LOC101060391
24   chr3  131261435      131445277  NM_001289112         CPNE4
27   chr9   41861677       43212035  NM_001012419     ANKRD20A3
29   chr9   41861677       43212035  NM_001012421     ANKRD20A2
31   chr9   41861677       43212035     NM_199244       FOXD4L4
32   chr9   41861677       43212035     NR_003670        FGF7P3
33   chr9   41861677       43212035     NR_015363         GLIDR
34   chr9   41861677       43212035     NR_026558        AQP7P3
35   chr9   41861677       43212035     NR_027472     LOC642929
36   chr9   41861677       43212035     NR_046175     LOC286297
37   chr9   41861677       43212035     NR_121570  LOC101928381
38   chr9   41861677       43212035     NR_121572      GXYLT1P3
42   chr9   41861677       43212035     NR_126048  LOC102724238
43   chr9   41861677       43212035     NR_126049     LOC554249
44   chr9   41861677       43212035     NR_135597  LOC101928195
45   chr9   41861677       43212035     NR_136299  LOC101929583
46   chr9   41861677       43212035     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   57643181       57804203  NM_001286256         STAC3
1   chr12   57643181       57804203  NM_001330122        R3HDM2
3   chr22   17264476       18668248  NM_001037814          GAB4
4   chr22   17264476       18668248  NM_001122731        MICAL3
5   chr22   17264476       18668248  NM_001127649         PEX26
7   chr22   17264476       18668248  NM_001163079         CECR6
8   chr22   17264476       18668248  NM_001193414         TUBA8
10  chr22   17264476       18668248  NM_001244567           BID
13  chr22   17264476       18668248  NM_001270733       BCL2L13
14  chr22   17264476       18668248  NM_001282227         CECR1
16  chr22   17264476       18668248  NM_001288707  LOC101929372
17  chr22   17264476       18668248  NM_001289905        IL17RA
18  chr22   17264476       18668248  NM_001290046         CECR2
20  chr22   17264476       18668248  NM_001303484      SLC25A18
21  chr22   17264476       18668248     NM_001696      ATP6V1E1
24  chr22   17264476       18668248     NM_017414         USP18
25  chr22   17264476       18668248     NM_017829         CECR5
28  chr22   17264476       18668248     NM_175878          XKR3
30  chr22   17264476       18668248     NR_003607       HSFY1P1
31  chr22   17264476       18668248     NR_015352         CECR7
32  chr22   17264476       18668248     NR_024417      FLJ41941
33  chr22   17264476       18668248     NR_024482     CECR5-AS1
34  chr22   17264476       18668248     NR_030378        MIR648
35  chr22   17264476       18668248     NR_036168     MIR3198-1
36  chr22   17264476       18668248     NR_038398         CECR3
38  chr22   17264476       18668248     NR_103718     LINC00528
39  chr22   17264476       18668248     NR_103793  LOC100996342
40  chr22   17264476       18668248     NR_136570  LOC100996415
41  chr22   17264476       18668248     NR_136574  LOC105379550
42  chr22   20088250       20190063  NM_001190326         DGCR8
43  chr22   20088250       20190063  NM_001243537       CCDC188
44  chr22   20088250       20190063  NM_001278639        RANBP1
47  chr22   20088250       20190063     NM_013373        ZDHHC8
48  chr22   20088250       20190063     NM_022727        TRMT2A
49  chr22   20088250       20190063     NR_038460     LOC284865
50  chr22   20088250       20190063     NR_106874       MIR6816
51   chr3     292128         493993  NM_001253387          CHL1
53   chr3     292128         493993     NR_110739      CHL1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143124558      143343782     NR_110761  LOC102723769
1    chr1  242753616      243343021     NM_014812        CEP170
2    chr1  242753616      243343021     NR_029401     LINC01347
3    chr1  245039988      245465868  NM_001143943        EFCAB2
5    chr1  245039988      245465868     NM_018012        KIF26B
7    chr1  245039988      245465868     NR_111907  LOC101928068
8   chr13   89207573       89411832     NR_047490     LINC00560
9   chr15   21193927       21342654     NR_040094     LINC01193
10  chr16   16302615       16795823  NM_001004067         NOMO3
11  chr16   16302615       16795823  NM_001079528         ABCC6
13  chr16   16302615       16795823  NM_001282511        NPIPA8
14  chr16   16302615       16795823     NR_036140     MIR3179-1
15  chr16   16302615       16795823     NR_036141     MIR3180-1
16  chr16   16302615       16795823     NR_036142     MIR3180-2
17  chr16   16302615       16795823     NR_036447        PKD1P1
18  chr16   16302615       16795823     NR_103772  LOC100288162
19  chr16   16302615       16795823     NR_106766     MIR6511A1
20  chr16   16302615       16795823     NR_106971     MIR6511A4
21  chr16   16302615       16795823     NR_107060     MIR6770-2
22  chr16   16302615       16795823     NR_128713     MIR3670-4
23  chr22   17188435       17504375  NM_001037814          GAB4
24  chr22   17188435       17504375     NM_175878          XKR3
25  chr22   17188435       17504375     NR_003607       HSFY1P1
26  chr22   17188435       17504375     NR_134584  LOC101929350
27   chr4   69205377       69722639  NM_001031732        YTHDC1
28   chr4   69205377       69722639     NM_001075       UGT2B10
29   chr4   69205377       69722639     NM_001076       UGT2B15
30   chr4   69205377       69722639     NM_001077       UGT2B17
31   chr4   69205377       69722639     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28578376       29252220  NM_001130414         APBA2
1   chr15   28578376       29252220  NM_001282468       GOLGA8M
2   chr15   28578376       29252220     NR_026589       WHAMMP2
3   chr15   28578376       29252220     NR_033351       GOLGA8F
5   chr15   28578376       29252220     NR_033353       GOLGA8G
7   chr15   28578376       29252220     NR_036443       HERC2P9
8   chr15   28578376       29252220     NR_036475  LOC100289656
9   chr15   28578376       29252220     NR_037599     PDCD6IPP2
10  chr15   28578376       29252220     NR_039734     MIR4509-3
12  chr15   28578376       29252220     NR_047567     GOLGA6L7P
13  chr15   28533541       28795644     NM_004667         HERC2
14  chr15   28533541       28795644     NR_033351       GOLGA8F
16  chr15   28533541       28795644     NR_033353       GOLGA8G
18  chr15   28533541       28795644     NR_039734     MIR4509-3
20   chr3  196785349      197670186  NM_001011537        FYTTD1
21   chr3  196785349      197670186  NM_001145642         RUBCN
22   chr3  196785349      197670186  NM_001204386          DLG1
25   chr3  196785349      197670186  NM_001323027          IQCG
30   chr3  196785349      197670186     NM_032773         LRCH3
31   chr3  196785349      197670186     NM_203314          BDH1
33   chr3  196785349      197670186     NR_003266     LOC220729
35   chr3  196785349      197670186     NR_030627        MIR922
36   chr3  196785349      197670186     NR_038289      DLG1-AS1
37   chr3  196785349      197670186     NR_039960       MIR4797
38   chr5   59641625       59748080  NM_001165899         PDE4D
39   chr7    3807823        3959206     NM_152744          SDK1
40   chr7  153809296      153912482  NM_001039350          DPP6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28802320       29003060  NM_001282468       GOLGA8M
1   chr15   28802320       29003060     NR_026589       WHAMMP2
2   chr15   28802320       29003060     NR_036443       HERC2P9
3   chr16   14969253       15108925  NM_001285445        PDXDC1
9   chr16   14969253       15108925     NM_006985        NPIPA1
10  chr16   14969253       15108925     NM_014287         NOMO1
11  chr16   14969253       15108925     NR_036140     MIR3179-1
12  chr16   14969253       15108925     NR_036141     MIR3180-1
13  chr16   14969253       15108925     NR_036142     MIR3180-2
14  chr16   14969253       15108925     NR_103772  LOC100288162
15  chr16   14969253       15108925     NR_106970     MIR6511A3
16  chr16   14969253       15108925     NR_107060     MIR6770-2
17  chr16   14969253       15108925     NR_128713     MIR3670-4
18  chr16   16483899       16584097  NM_001282511        NPIPA8
19   chr4   93301883       93853005     NM_001510         GRID2,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr1  245022885      245125112  NM_004501        HNRNPU
1  chr2  185139384      186145581  NM_194250       ZNF804A
2  chr2  185139384      186145581  NR_039638     MIR548AE1
3  chr2  185139384      186145581  NR_136319  LOC105373782
4  chr7   14806738       15035471  NM_004080          DGKB,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2   81592324       81831021     NR_110161  LOC100507201
1  chr3   59995922       60353276  NM_001320899          FHIT
3  chr6  162657102      162916142     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr2   75836244       75962928  NM_001201334        GCFC2
3    chr2   75836244       75962928     NM_014763       MRPL19
4    chr2  133120668      133253466     NM_001508        GPR39
5   chr20   14887896       14995342     NM_080676      MACROD2
6   chr20   14887896       14995342     NR_037841  MACROD2-AS1
8    chr7  110503348      110640773  NM_001244606       IMMP2L
10   chr9   41846320       41963180     NR_003670       FGF7P3
11   chr9   41846320       41963180     NR_015363        GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21777347       21918300  NM_001170629          CHD8
1   chr14   21777347       21918300     NM_007192       SUPT16H
2   chr14   21777347       21918300     NM_020366       RPGRIP1
4   chr14   21777347       21918300     NR_002916        SNORD8
5   chr14   21777347       21918300     NR_003029        SNORD9
6   chr16   21476581       21805388  NM_001077180        METTL9
7   chr16   21476581       21805388  NM_001161683          OTOA
9   chr16   21476581       21805388     NM_005849         IGSF6
12  chr16   21476581       21805388     NR_002594      SLC7A5P2
13  chr16   21476581       21805388     NR_027155        SMG1P3
14  chr16   21476581       21805388     NR_049833     MIR3680-2
15  chr16   21476581       21805388     NR_110930  LOC101927814
16   chr3  156066283      156475386  NM_001184717        TIPARP
18   chr3  156066283      156475386  NM_001308197          SSR3
21   chr3  156066283      156475386  NM_001308217        KCNAB1
27   chr3  156066283      156475386     NR_027954    TIPARP-AS1
28   chr3  156066283      156475386     NR_038387     LINC00886
29   chr3  156066283      156475386     NR_046618    KCNAB1-AS1
30   chr4   94097436       94603067     NM_001510         GRID2
31   chr6   97425576       97684730  NM_001286251        KLHL32
35   chr6   97425576       97684730     NM_198468        MMS22L
36   chr6   97425576       97684730     NR_031679      MIR548H3
37   chr8    8198445        8343080  NM_001080826         PRAG1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67835905       67960628  NM_001127384        CTNNA3
2   chr16   14807597       15106198  NM_001277323        NPIPA3
4   chr16   14807597       15106198  NM_001277324        NPIPA2
6   chr16   14807597       15106198  NM_001285445        PDXDC1
12  chr16   14807597       15106198     NM_006985        NPIPA1
13  chr16   14807597       15106198     NM_014287         NOMO1
14  chr16   14807597       15106198     NR_023387       ABCC6P2
15  chr16   14807597       15106198     NR_036140     MIR3179-1
16  chr16   14807597       15106198     NR_036141     MIR3180-1
17  chr16   14807597       15106198     NR_036142     MIR3180-2
18  chr16   14807597       15106198     NR_103772  LOC100288162
19  chr16   14807597       15106198     NR_106970     MIR6511A3
20  chr16   14807597       15106198     NR_107060     MIR6770-2
21  chr16   14807597       15106198     NR_128713     MIR3670-4
22   chr2   51208757       51382822  NM_001330079         NRXN1
25   chr2   51208757       51382822     NR_135237     LOC730100
26   chr7  110617963      110724136  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12     689342        1019982  NM_001294345         NINJ2
3   chr12     689342        1019982     NM_018979          WNK1
4   chr12     689342        1019982     NR_122124  LOC100049716
5   chr12     689342        1019982     NR_134624  LOC105369595
6   chr15   20939867       21121951  NM_001277303        POTEB2
7   chr15   20939867       21121951     NM_207355        POTEB3
8   chr15   20939867       21121951     NR_027992        NBEAP1
9   chr15   20939867       21121951     NR_036062     MIR3118-2
11  chr20   14667980       14873055     NM_080676       MACROD2
12  chr20   14667980       14873055     NR_037841   MACROD2-AS1
13   chr9    4342033        4609102  NM_001039395       SPATA6L
14   chr9    4342033        4609102     NM_004170        SLC1A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144855244      144987610  NM_001002810       PDE4DIP
7    chr1  144855244      144987610  NM_001277444         NBPF9
8    chr1  144855244      144987610  NM_001278267        NBPF20
10  chr15   28544305       29406962  NM_001130414         APBA2
11  chr15   28544305       29406962  NM_001282468       GOLGA8M
12  chr15   28544305       29406962     NM_004667         HERC2
13  chr15   28544305       29406962     NR_026589       WHAMMP2
14  chr15   28544305       29406962     NR_033351       GOLGA8F
16  chr15   28544305       29406962     NR_033353       GOLGA8G
18  chr15   28544305       29406962     NR_036443       HERC2P9
19  chr15   28544305       29406962     NR_036475  LOC100289656
20  chr15   28544305       29406962     NR_037599     PDCD6IPP2
21  chr15   28544305       29406962     NR_039734     MIR4509-3
23  chr15   28544305       29406962     NR_047567     GOLGA6L7P
24   chr4   94147227       95668656  NM_001011516        PDLIM5
25   chr4   94147227       95668656  NM_001128429      SMARCAD1
30   chr4   94147227       95668656     NM_001510         GRID2
31   chr4   94147227       95668656     NM_005172         ATOH1
32   chr4   94147227       95668656     NM_014485         HPGDS
34   chr4   94147227       95668656     NR_121610    BMPR1B-AS1
35   chr4   94147227       95668656     NR_125922  LOC101929210
36   chr8   97747286       97867575     NM_016134           CPQ
37   chr8  124936101      125195246  NM_001039112        FER1L6
38   chr8  124936101      125195246     NR_040044    FER1L6-AS1
39   chr8  124936101      125195246     NR_103547    FER1L6-AS2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143703957      143839196  NM_001123068       PPIAL4G
1  chr1  143703957      143839196     NR_104014     LINC01138
2  chr1  143703957      143839196     NR_111930  LOC100132057
3  chr7    8690140        8891505     NM_152745         NXPH1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10    7164427        7265092  NM_001018039     SFMBT2
2   chr10    7164427        7265092     NR_132972   SNORD129
3   chr14   21709652       22054288  NM_001005465     OR10G3
4   chr14   21709652       22054288  NM_001163380      RAB2B
5   chr14   21709652       22054288  NM_001170629       CHD8
6   chr14   21709652       22054288  NM_001303523       TOX4
7   chr14   21709652       22054288     NM_007192    SUPT16H
8   chr14   21709652       22054288     NM_019852     METTL3
9   chr14   21709652       22054288     NM_020366    RPGRIP1
11  chr14   21709652       22054288     NM_031314     HNRNPC
13  chr14   21709652       22054288     NR_002916     SNORD8
14  chr14   21709652       22054288     NR_003029     SNORD9
15  chr14   21709652       22054288     NR_111966      SALL2
17   chr3  176598755      176753442  NM_001321193    TBL1XR1
19   chr8   58117186       58217505     NR_026772  LINC00588
20   chr8   58117186       58217505     NR_038235  LINC01606
21   chr8   58117186       58217505     NR_038874  LOC286177,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48305996       48717738  NM_001004702         OR4C3
1   chr11   48305996       48717738  NM_001004725         OR4S1
2   chr11   48305996       48717738  NM_001005512        OR4A47
3   chr11   48305996       48717738  NM_001005513        OR4C45
4    chr2  186495820      186701809     NM_173651         FSIP2
5    chr2  186495820      186701809     NR_110214  LOC101927196
8    chr2  186495820      186701809     NR_144453     FSIP2-AS1
10  chr20   14709588       15140543     NM_080676       MACROD2
11  chr20   14709588       15140543     NR_037841   MACROD2-AS1
13  chr21   23444796       23658448     NR_038400     LINC00308
14  chr21   23444796       23658448     NR_109959  LOC101927843,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11    5451983        5582045  NM_001004754       OR51I2
1   chr11    5451983        5582045  NM_001005163       OR52D1
2   chr11    5451983        5582045  NM_001005288       OR51I1
3   chr11    5451983        5582045  NM_001005289       OR52H1
4   chr11    5451983        5582045  NM_001005567       OR51B5
5   chr11    5451983        5582045     NM_017481       UBQLN3
6   chr11    5451983        5582045     NM_145053       UBQLNL
8   chr11    5451983        5582045     NR_133006       OLFM5P
9   chr14   21716243       21986478  NM_001163380        RAB2B
10  chr14   21716243       21986478  NM_001170629         CHD8
11  chr14   21716243       21986478  NM_001303523         TOX4
12  chr14   21716243       21986478     NM_007192      SUPT16H
13  chr14   21716243       21986478     NM_019852       METTL3
14  chr14   21716243       21986478     NM_020366      RPGRIP1
16  chr14   21716243       21986478     NM_031314       HNRNPC
18  chr14   21716243       21986478     NR_002916       SNORD8
19  chr14   21716243       21986478     NR_003029       SNORD9
20  chr14   38171782       38339168  NM_001310135         TTC6
21   chr4   69079258       69440073  NM_001031732       YTHDC1
22   chr4   69079258       69440073     NM_001077      UGT2B17
23   chr4   69079258       69440073     NM_014058    TMPRSS11E
24   chr4   69079258       69440073     NM_182502    TMPRSS11B
25   chr4   69079258       69440073     NR_104048  TMPRSS11BNL
26   chr7    8566563        8900551     NM_152745        NXPH1
27   chr9   22394756       22589666     NM_022160       DMRTA1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28664092       28911755     NR_033351       GOLGA8F
1   chr15   28664092       28911755     NR_033353       GOLGA8G
2   chr15   28664092       28911755     NR_036443       HERC2P9
3   chr15   28664092       28911755     NR_039734     MIR4509-3
5   chr20   14814887       15333179  NM_001033087       MACROD2
7   chr20   14814887       15333179     NR_037841   MACROD2-AS1
9   chr22   17185232       17378939     NM_175878          XKR3
10  chr22   17185232       17378939     NR_003607       HSFY1P1
11  chr22   17185232       17378939     NR_134584  LOC101929350
12   chr3   80828239       81094901     NR_132411     LOC728290,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  108385234      109056763  NM_001143988     NBPF6
1    chr1  108385234      109056763  NM_001143989     NBPF4
2    chr1  108385234      109056763     NM_006113      VAV3
3    chr1  108385234      109056763     NM_013386  SLC25A24
5    chr1  108385234      109056763     NR_046653  VAV3-AS1
6    chr1  108385234      109056763     NR_107006   MIR7852
7   chr14   21795489       22139540  NM_001001912     OR4E2
8   chr14   21795489       22139540  NM_001005465    OR10G3
9   chr14   21795489       22139540  NM_001005466    OR10G2
10  chr14   21795489       22139540  NM_001163380     RAB2B
11  chr14   21795489       22139540  NM_001170629      CHD8
12  chr14   21795489       22139540  NM_001303523      TOX4
13  chr14   21795489       22139540  NM_001317107     OR4E1
14  chr14   21795489       22139540     NM_007192   SUPT16H
15  chr14   21795489       22139540     NM_019852    METTL3
16  chr14   21795489       22139540     NM_020366   RPGRIP1
19  chr14   21795489       22139540     NR_002916    SNORD8
20  chr14   21795489       22139540     NR_003029    SNORD9
21  chr14   21795489       22139540     NR_111966     SALL2
23   chr7   64098399       64241808  NM_001282360    ZNF107
25   chr7   64098399       64241808     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67969780       68130802  NM_001127384    CTNNA3
2   chr11   67342073       67469911     NM_000695   ALDH3B2
3   chr11   67342073       67469911     NM_000852     GSTP1
5   chr11   67342073       67469911  NM_001166102    NDUFV1
6   chr11   67342073       67469911  NM_001243750     NUDT8
7   chr11   67342073       67469911     NM_005995     TBX10
8   chr11   67342073       67469911     NM_080658      ACY3
10  chr11   67342073       67469911     NR_033791    DOC2GP
11  chr11   67342073       67469911     NR_130935  C11orf72
12  chr22   17260882       17459645  NM_001037814      GAB4
13  chr22   17260882       17459645     NM_175878      XKR3
14  chr22   17260882       17459645     NR_003607   HSFY1P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241479500      241662558     NM_000143            FH
1    chr1  241479500      241662558  NM_001282773          RGS7
2   chr15   28701313       28995298  NM_001282468       GOLGA8M
3   chr15   28701313       28995298     NR_026589       WHAMMP2
4   chr15   28701313       28995298     NR_033351       GOLGA8F
5   chr15   28701313       28995298     NR_033353       GOLGA8G
6   chr15   28701313       28995298     NR_036443       HERC2P9
7   chr15   28701313       28995298     NR_039734     MIR4509-3
8   chr16   68534941       68777730  NM_001305204         ZFP90
10  chr16   68534941       68777730  NM_001317184          CDH1
11  chr16   68534941       68777730  NM_001317195          CDH3
12  chr16   68534941       68777730     NR_106988     MIR7641-2
13   chr4    9020263        9287204  NM_001256852      USP17L10
14   chr4    9020263        9287204  NM_001256853      USP17L12
16   chr4    9020263        9287204  NM_001256854      USP17L11
19   chr4    9020263        9287204  NM_001256855      USP17L13
20   chr4    9020263        9287204  NM_001256857      USP17L17
21   chr4    9020263        9287204  NM_001256860      USP17L19
22   chr4    9020263        9287204  NM_001256861      USP17L20
23   chr4    9020263        9287204  NM_001256894      USP17L15
24   chr9   67053925       67338468     NR_002817        AQP7P1
25   chr9   67053925       67338468     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr11   67350291       67454586     NM_000695            ALDH3B2
1   chr11   67350291       67454586     NM_000852              GSTP1
3   chr11   67350291       67454586  NM_001166102             NDUFV1
4   chr11   67350291       67454586  NM_001243750              NUDT8
5   chr11   67350291       67454586     NM_005995              TBX10
6   chr11   67350291       67454586     NM_080658               ACY3
8   chr11   67350291       67454586     NR_033791             DOC2GP
9   chr11   67350291       67454586     NR_130935           C11orf72
10  chr20   14736606       15515654  NM_001033087            MACROD2
12  chr20   14736606       15515654     NR_037841        MACROD2-AS1
14  chr22   16991014       18309526  NM_001037814               GAB4
15  chr22   16991014       18309526  NM_001163079              CECR6
16  chr22   16991014       18309526  NM_001244567                BID
19  chr22   16991014       18309526  NM_001270733            BCL2L13
20  chr22   16991014       18309526  NM_001282227              CECR1
22  chr22   16991014       18309526  NM_001288707       LOC101929372
23  chr22   16991014       18309526  NM_001289905             IL17RA
24  chr22   16991014       18309526  NM_001290046              CECR2
26  chr22   16991014       18309526  NM_001303484           SLC25A18
27  chr22   16991014       18309526     NM_001696           ATP6V1E1
28  chr22   16991014       18309526     NM_014406             CCT8L2
29  chr22   16991014       18309526     NM_015241             MICAL3
31  chr22   16991014       18309526     NM_017829              CECR5
34  chr22   16991014       18309526     NM_175878               XKR3
36  chr22   16991014       18309526     NR_001591             TPTEP1
37  chr22   16991014       18309526     NR_003607            HSFY1P1
38  chr22   16991014       18309526     NR_015352              CECR7
39  chr22   16991014       18309526     NR_024482          CECR5-AS1
40  chr22   16991014       18309526     NR_036168          MIR3198-1
41  chr22   16991014       18309526     NR_038398              CECR3
42  chr22   16991014       18309526     NR_040115  ANKRD62P1-PARP4P3
44  chr22   16991014       18309526     NR_103718          LINC00528
45  chr22   16991014       18309526     NR_103793       LOC100996342
46  chr22   16991014       18309526     NR_134584       LOC101929350,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr14   47870133       48005442  NM_001113498        MDGA2
1  chr16   85289243       85414301     NR_038859    LINC00311
2  chr16   85289243       85414301     NR_049816      MIR5093
3   chr2   84645556       84775814     NM_001370        DNAH6
4   chr2   84645556       84775814     NM_003849       SUCLG1
5  chr20   14849327       15164650     NM_080676      MACROD2
6  chr20   14849327       15164650     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20972964       21100507  NM_001277303        POTEB2
1   chr15   20972964       21100507     NM_207355        POTEB3
2   chr15   20972964       21100507     NR_036062     MIR3118-2
4    chr2   34217555       34370566     NR_126403     LINC01317
5    chr2   34217555       34370566     NR_132381     LINC01318
6   chr22   17231503       17679474  NM_001037814          GAB4
7   chr22   17231503       17679474  NM_001163079         CECR6
8   chr22   17231503       17679474  NM_001282227         CECR1
10  chr22   17231503       17679474  NM_001289905        IL17RA
11  chr22   17231503       17679474     NM_017829         CECR5
14  chr22   17231503       17679474     NM_175878          XKR3
16  chr22   17231503       17679474     NR_003607       HSFY1P1
17  chr22   17231503       17679474     NR_015352         CECR7
18  chr22   17231503       17679474     NR_024482     CECR5-AS1
19  chr22   17231503       17679474     NR_103793  LOC100996342,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12819818       12965339  NM_001009611       PRAMEF4
1    chr1   12819818       12965339  NM_001013631      HNRNPCL1
2    chr1   12819818       12965339  NM_001080830      PRAMEF12
3    chr1   12819818       12965339  NM_001146181      HNRNPCL3
4    chr1   12819818       12965339  NM_001146344      PRAMEF11
5    chr1   12819818       12965339  NM_001294139       PRAMEF1
6    chr1   12819818       12965339  NM_001302551      HNRNPCL4
8    chr1   12819818       12965339     NM_023014       PRAMEF2
9    chr1   12819818       12965339     NM_152290      C1orf158
10  chr14   21848254       22099807  NM_001005465        OR10G3
11  chr14   21848254       22099807  NM_001163380         RAB2B
12  chr14   21848254       22099807  NM_001170629          CHD8
13  chr14   21848254       22099807  NM_001303523          TOX4
14  chr14   21848254       22099807     NM_007192       SUPT16H
15  chr14   21848254       22099807     NM_019852        METTL3
18  chr14   21848254       22099807     NR_002916        SNORD8
19  chr14   21848254       22099807     NR_003029        SNORD9
20  chr14   21848254       22099807     NR_111966         SALL2
22  chr15   58861476       59455880  NM_001040450        FAM63B
24  chr15   58861476       59455880     NM_001110        ADAM10
25  chr15   58861476       59455880  NM_001270530        RNF111
27  chr15   58861476       59455880     NM_004701         CCNB2
28  chr15   58861476       59455880     NM_004998         MYO1E
30  chr15   58861476       59455880     NR_073415     HSP90AB4P
31  chr15   58861476       59455880     NR_135043          SLTM
32  chr15   58861476       59455880     NR_135474  LOC101928725
33   chr9   39041021       39546219  NM_001085452     SPATA31A1
34   chr9   39041021       39546219     NM_033655       CNTNAP3
35   chr9   39041021       39546219     NR_003528       ZNF658B
36   chr9   39041021       39546219     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244970678      245332831  NM_001143943        EFCAB2
2    chr1  244970678      245332831  NM_001312871         COX20
4    chr1  244970678      245332831     NM_004501        HNRNPU
5    chr1  244970678      245332831     NM_018012        KIF26B
8    chr1  244970678      245332831     NR_111907  LOC101928068
9    chr1  244970678      245332831     NR_132782      SNORA100
10  chr14   21884239       23416372  NM_001001912         OR4E2
11  chr14   21884239       23416372  NM_001005465        OR10G3
12  chr14   21884239       23416372  NM_001005466        OR10G2
13  chr14   21884239       23416372  NM_001039619         PRMT5
14  chr14   21884239       23416372  NM_001126105        SLC7A7
16  chr14   21884239       23416372  NM_001163380         RAB2B
17  chr14   21884239       23416372  NM_001170629          CHD8
18  chr14   21884239       23416372  NM_001303523          TOX4
19  chr14   21884239       23416372  NM_001317107         OR4E1
20  chr14   21884239       23416372  NM_001318870        MRPL52
21  chr14   21884239       23416372  NM_001329226         LRP10
22  chr14   21884239       23416372     NM_001344          DAD1
23  chr14   21884239       23416372     NM_004995         MMP14
24  chr14   21884239       23416372     NM_005015         OXA1L
25  chr14   21884239       23416372     NM_017815         HAUS4
26  chr14   21884239       23416372     NM_018107         RBM23
27  chr14   21884239       23416372     NM_019852        METTL3
29  chr14   21884239       23416372     NM_022060         ABHD4
31  chr14   21884239       23416372     NM_173527          REM2
33  chr14   21884239       23416372     NR_110002  LOC101926933
34  chr14   21884239       23416372     NR_111966         SALL2
36  chr14   21884239       23416372     NR_120599     PRMT5-AS1
37  chr15   99902146      100216257  NM_001130928         MEF2A
38  chr15   99902146      100216257  NM_001284400        LRRC28
41  chr16   12280517       12684548     NM_032167         SNX29,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63364104       63635299     NR_047029     LINC00448
3   chr16   16416028       16516164  NM_001282511        NPIPA8
4   chr16   16416028       16516164     NR_036447        PKD1P1
5   chr16   16416028       16516164     NR_103772  LOC100288162
6   chr16   16416028       16516164     NR_106766     MIR6511A1
7   chr16   16416028       16516164     NR_106971     MIR6511A4
8   chr16   16416028       16516164     NR_107060     MIR6770-2
9   chr16   16451475       16561747  NM_001282511        NPIPA8
10  chr16   16451475       16561747     NR_106971     MIR6511A4
11  chr17   56103333       56298631     NM_000502           EPX
12  chr17   56103333       56298631  NM_001004707         OR4D2
13  chr17   56103333       56298631  NM_001165927          MKS1
15  chr17   56103333       56298631     NM_012374         OR4D1
16  chr17   56103333       56298631     NM_080677        DYNLL2
17  chr17   56103333       56298631     NR_002307        MSX2P1
18  chr17   56103333       56298631     NR_110809  LOC101927666
19  chr22   19949449       20160538     NM_000754          COMT
22  chr22   19949449       20160538  NM_001190326         DGCR8
23  chr22   19949449       20160538  NM_001243537       CCDC188
24  chr22   19949449       20160538  NM_001278639        RANBP1
27  chr22   19949449       20160538  NM_001283116        TANGO2
30  chr22   19949449       20160538     NM_001670         ARVCF
32  chr22   19949449       20160538     NM_013373        ZDHHC8
33  chr22   19949449       20160538     NM_022727        TRMT2A
34  chr22   19949449       20160538     NR_029706        MIR185
35  chr22   19949449       20160538     NR_031706       MIR1306
36  chr22   19949449       20160538     NR_037412       MIR3618
37  chr22   19949449       20160538     NR_039918       MIR4761
38  chr22   19949449       20160538     NR_106874       MIR6816
39   chr7  121467008      121713671  NM_001206838        PTPRZ1
40   chr7  121467008      121713671     NM_005763          AASS
41   chr8    7081661        7228596  NM_001164457       ZNF705G
42   chr8    7081661        7228596  NM_001256873       USP17L1
43   chr8    7081661        7228596  NM_001256874       USP17L4
44   chr8    7081661        7228596     NR_003668    DEFB109P1B
45   chr8    7081661        7228596     NR_027000     LINC00965
48   chr8    7081661        7228596     NR_027423        FAM66B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12858104       13001529  NM_001009611       PRAMEF4
1    chr1   12858104       13001529  NM_001010889       PRAMEF6
2    chr1   12858104       13001529  NM_001010890       PRAMEF9
3    chr1   12858104       13001529  NM_001012276       PRAMEF8
4    chr1   12858104       13001529  NM_001013631      HNRNPCL1
5    chr1   12858104       13001529  NM_001146181      HNRNPCL3
6    chr1   12858104       13001529  NM_001146344      PRAMEF11
7    chr1   12858104       13001529  NM_001302551      HNRNPCL4
8    chr1   12858104       13001529     NM_023014       PRAMEF2
9   chr11   48335345       48643216  NM_001004702         OR4C3
10  chr11   48335345       48643216  NM_001005512        OR4A47
11  chr11   48335345       48643216  NM_001005513        OR4C45
12  chr14   21830871       22010368  NM_001163380         RAB2B
13  chr14   21830871       22010368  NM_001170629          CHD8
14  chr14   21830871       22010368  NM_001303523          TOX4
15  chr14   21830871       22010368     NM_007192       SUPT16H
16  chr14   21830871       22010368     NM_019852        METTL3
19  chr14   21830871       22010368     NR_002916        SNORD8
20  chr14   21830871       22010368     NR_003029        SNORD9
21  chr14   21830871       22010368     NR_111966         SALL2
23  chr17   78252984       78414407  NM_001164637         ENDOV
25  chr17   78252984       78414407  NM_001256071        RNF213
27  chr17   78252984       78414407     NR_029376  LOC100294362
28  chr17   78252984       78414407     NR_039883       MIR4730,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143667998      145436167  NM_001002810       PDE4DIP
3    chr1  143667998      145436167  NM_001123068       PPIAL4G
4    chr1  143667998      145436167  NM_001135789       PPIAL4C
9    chr1  143667998      145436167  NM_001277444         NBPF9
10   chr1  143667998      145436167  NM_001278267        NBPF20
11   chr1  143667998      145436167  NM_001287385        FAM72C
12   chr1  143667998      145436167  NM_001302371        NBPF10
13   chr1  143667998      145436167  NM_001345942        FAM72D
16   chr1  143667998      145436167     NM_004892        SEC22B
18   chr1  143667998      145436167     NM_145277          HFE2
19   chr1  143667998      145436167     NM_203458      NOTCH2NL
21   chr1  143667998      145436167     NR_003242        PFN1P2
22   chr1  143667998      145436167     NR_024511     LINC00623
24   chr1  143667998      145436167     NR_102405         NBPF8
25   chr1  143667998      145436167     NR_104014     LINC01138
26   chr1  143667998      145436167     NR_104217       NBPF25P
27   chr1  143667998      145436167     NR_106967       MIR6077
28   chr1  143667998      145436167     NR_111930  LOC100132057
29   chr1  143667998      145436167     NR_111953     LINC00869
30   chr1  143667998      145436167     NR_125967  LOC101928979
32  chr16   14740140       14875390  NM_001277323        NPIPA3
34  chr16   14740140       14875390  NM_001277324        NPIPA2
36  chr16   14740140       14875390     NM_016561          BFAR
37  chr16   14740140       14875390     NR_133651       PLA2G10
38  chr19   21676168       21816202  NM_001001415        ZNF429
39  chr19   21676168       21816202     NR_037194     LINC00664
40   chr7   83875134       84428001     NR_110079  LOC101927378
42   chr9   28705446       29269968  NM_001258282        LINGO2
44   chr9   28705446       29269968     NR_030597        MIR876
45   chr9   28705446       29269968     NR_030618        MIR873
46   chr9   41439103       41618241  NM_001113541     SPATA31A5
47   chr9   41439103       41618241     NM_015667     SPATA31A7
48   chr9   41439103       41618241     NR_003528       ZNF658B
49   chr9   41439103       41618241     NR_026803       FAM74A1
50   chr9   41886865       42079437     NR_003670        FGF7P3
51   chr9   41886865       42079437     NR_015363         GLIDR
54   chr9   41886865       42079437     NR_126048  LOC102724238
55   chr9   41886865       42079437     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  181366212      181582949     NM_000721       CACNA1E
1   chr15   97712116       98226657     NR_110756  LOC101927310
2   chr15   97712116       98226657     NR_120324  LOC101927286
3   chr22   18984927       19652902  NM_001035247         UFD1L
4   chr22   18984927       19652902  NM_001166242      C22orf39
5   chr22   18984927       19652902  NM_001178010         CDC45
6   chr22   18984927       19652902  NM_001184781         DGCR2
7   chr22   18984927       19652902  NM_001256534       SLC25A1
8   chr22   18984927       19652902  NM_001318151        MRPL40
10  chr22   18984927       19652902     NM_001835        CLTCL1
11  chr22   18984927       19652902     NM_003277         CLDN5
12  chr22   18984927       19652902     NM_003325          HIRA
14  chr22   18984927       19652902     NM_005315          GSC2
16  chr22   18984927       19652902     NM_022719        DGCR14
17  chr22   18984927       19652902     NM_053006         TSSK2
19  chr22   18984927       19652902     NR_024157        DGCR11
20  chr22   18984927       19652902     NR_024159         DGCR9
21  chr22   18984927       19652902     NR_024381     LINC00895
22  chr22   18984927       19652902     NR_026651        DGCR10
23  chr22   18984927       19652902     NR_103767     LINC01311
24  chr22   18984927       19652902     NR_110533         DGCR5
25   chr3  131278470      131379802  NM_001289112         CPNE4
28   chr3  160002444      160203809  NM_001190241         IFT80
30   chr3  160002444      160203809  NM_001288753          SMC4
32   chr3  160002444      160203809     NM_173084        TRIM59
33   chr3  160002444      160203809     NR_029525       MIR16-2
34   chr3  160002444      160203809     NR_029663        MIR15B
35   chr4  169177553      169409182  NM_001012967        DDX60L
37   chr4  169177553      169409182     NM_017631         DDX60,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21867564       22020400  NM_001163380      RAB2B
1   chr14   21867564       22020400  NM_001170629       CHD8
2   chr14   21867564       22020400  NM_001303523       TOX4
3   chr14   21867564       22020400     NM_019852     METTL3
6   chr14   21867564       22020400     NR_111966      SALL2
8   chr15   21049766       21960642  NM_001277303     POTEB2
9   chr15   21049766       21960642     NM_207355     POTEB3
10  chr15   21049766       21960642     NR_027053  LOC646214
11  chr15   21049766       21960642     NR_028506      NF1P2
12  chr15   21049766       21960642     NR_040094  LINC01193
13  chr15   21049766       21960642     NR_049895  MIR5701-2
15   chr7   94295431       94563943  NM_001166160    PPP1R9A
17   chr7   94295431       94563943  NM_001184962      PEG10,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21794329       21895944  NM_001170629      CHD8
1   chr14   21794329       21895944     NM_007192   SUPT16H
2   chr14   21794329       21895944     NM_020366   RPGRIP1
4   chr14   21794329       21895944     NR_002916    SNORD8
5   chr14   21794329       21895944     NR_003029    SNORD9
6   chr16   10543937       10654361  NM_001256160   ATF7IP2
7   chr16   10543937       10654361     NM_001424      EMP2
9    chr2  242433381      242614842  NM_001164356     THAP4
10   chr2  242433381      242614842  NM_001271978     STK25
13   chr2  242433381      242614842     NM_014808     FARP2
15   chr2  242433381      242614842     NM_032515       BOK
16   chr2  242433381      242614842     NM_178326     ATG4B
17   chr2  242433381      242614842     NR_033346   BOK-AS1
18   chr3   41286395       41439268  NM_001322500      ULK4
20   chr3  131312644      131490153  NM_001289112     CPNE4
23   chr7  110663249      110951516  NM_001099658     LRRN3
24   chr7  110663249      110951516  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144690088      145045065  NM_001002810       PDE4DIP
7    chr1  144690088      145045065  NM_001277444         NBPF9
8    chr1  144690088      145045065  NM_001278267        NBPF20
10   chr1  144690088      145045065     NR_102405         NBPF8
11   chr1  245009666      245763019  NM_001143943        EFCAB2
13   chr1  245009666      245763019     NM_004501        HNRNPU
14   chr1  245009666      245763019     NM_018012        KIF26B
16   chr1  245009666      245763019     NR_111907  LOC101928068
17   chr1  245009666      245763019     NR_132782      SNORA100
18  chr15   28553977       30151985  NM_001130414         APBA2
19  chr15   28553977       30151985  NM_001282468       GOLGA8M
20  chr15   28553977       30151985  NM_001301025          TJP1
23  chr15   28553977       30151985     NM_004667         HERC2
24  chr15   28553977       30151985     NM_015307      FAM189A1
25  chr15   28553977       30151985     NM_138704        NSMCE3
26  chr15   28553977       30151985     NR_026589       WHAMMP2
27  chr15   28553977       30151985     NR_033351       GOLGA8F
29  chr15   28553977       30151985     NR_033353       GOLGA8G
31  chr15   28553977       30151985     NR_036443       HERC2P9
32  chr15   28553977       30151985     NR_036475  LOC100289656
33  chr15   28553977       30151985     NR_037599     PDCD6IPP2
34  chr15   28553977       30151985     NR_039734     MIR4509-3
36  chr15   28553977       30151985     NR_047567     GOLGA6L7P
37  chr15   28553977       30151985     NR_135221  LOC100130111
38  chr15   82754119       82970020  NM_001164465     GOLGA6L10
39  chr15   82754119       82970020  NM_001291420      GOLGA6L9
41  chr15   82754119       82970020     NR_026811     GOLGA2P10
43  chr15   82754119       82970020     NR_045529     ADAMTS7P1
44  chr15   82754119       82970020     NR_102747     LOC727751
45  chr15   82754119       82970020     NR_111943         RPS17
47  chr15   82754119       82970020     NR_111962    GOLGA6L17P
48  chr19   47768766       47881556  NM_001271749         C5AR2
50  chr19   47768766       47881556     NM_001736         C5AR1
51  chr19   47768766       47881556     NM_014681         DHX34
52  chr19   47768766       47881556     NM_015603         CCDC9
54  chr19   47768766       47881556     NM_178511        INAFM1
56   chr7   14847338       14998818     NM_004080          DGKB
58   chr7  146522296      146665020     NM_014141       CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28537458       29743538  NM_001130414         APBA2
1   chr15   28537458       29743538  NM_001282468       GOLGA8M
2   chr15   28537458       29743538     NM_004667         HERC2
3   chr15   28537458       29743538     NM_015307      FAM189A1
4   chr15   28537458       29743538     NM_138704        NSMCE3
5   chr15   28537458       29743538     NR_026589       WHAMMP2
6   chr15   28537458       29743538     NR_033351       GOLGA8F
8   chr15   28537458       29743538     NR_033353       GOLGA8G
10  chr15   28537458       29743538     NR_036443       HERC2P9
11  chr15   28537458       29743538     NR_036475  LOC100289656
12  chr15   28537458       29743538     NR_037599     PDCD6IPP2
13  chr15   28537458       29743538     NR_039734     MIR4509-3
15  chr15   28537458       29743538     NR_047567     GOLGA6L7P
16   chr7  143036223      143138425     NM_000083         CLCN1
17   chr7  143036223      143138425  NM_001278297       FAM131B
18   chr7  143036223      143138425  NM_001322263  LOC100507507
19   chr7  143036223      143138425     NM_003461           ZYX
20   chr7  143036223      143138425     NM_005232         EPHA1
22   chr7  143036223      143138425     NR_033897     EPHA1-AS1
23   chr7  143036223      143138425     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   95928087       96615200  NM_001261833          JRKL
1   chr11   95928087       96615200  NM_001318737        CCDC82
3   chr11   95928087       96615200     NM_032427         MAML2
4   chr11   95928087       96615200     NR_036125      MIR1260B
5   chr11   95928087       96615200     NR_047481      JRKL-AS1
6   chr11   95928087       96615200     NR_135097  LOC105369443
7   chr12   72567123       73036692     NM_013381         TRHDE
8   chr12   72567123       73036692     NR_026836     TRHDE-AS1
10   chr2  186553090      186666813     NM_173651         FSIP2
11   chr2  186553090      186666813     NR_110214  LOC101927196
14   chr2  186553090      186666813     NR_144453     FSIP2-AS1
16   chr7   18410124       18599255  NM_001204144         HDAC9,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11  108502067      108614681     NM_004398     DDX10
1  chr22   17263845       17581685  NM_001037814      GAB4
2  chr22   17263845       17581685  NM_001289905    IL17RA
3  chr22   17263845       17581685     NM_175878      XKR3
4  chr22   17263845       17581685     NR_003607   HSFY1P1
5  chr22   17263845       17581685     NR_015352     CECR7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18283615       18503389  NM_001282511        NPIPA8
1   chr16   18283615       18503389     NR_036142     MIR3180-2
2   chr16   18283615       18503389     NR_036144     MIR3180-3
3   chr16   18283615       18503389     NR_037442     MIR3670-1
4   chr16   18283615       18503389     NR_103772  LOC100288162
5   chr16   18283615       18503389     NR_106971     MIR6511A4
6   chr16   18283615       18503389     NR_107060     MIR6770-2
7    chr5   66253249       66888678  NM_001164664         MAST4
11   chr5   66253249       66888678     NM_005582         CD180
13   chr5   66253249       66888678     NR_111908     MAST4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  128504646      128634328     NR_104647  LOC100996679
1   chr12  128504646      128634328     NR_104648  LOC101927694
2   chr12  128504646      128634328     NR_131985         CRAT8
3   chr14   21847883       21951357  NM_001163380         RAB2B
4   chr14   21847883       21951357  NM_001170629          CHD8
5   chr14   21847883       21951357  NM_001303523          TOX4
6   chr14   21847883       21951357     NM_007192       SUPT16H
9   chr14   21847883       21951357     NR_002916        SNORD8
10  chr14   21847883       21951357     NR_003029        SNORD9
11   chr2  133535095      133663774     NM_207363        NCKAP5
12   chr4   94116936       94489410     NM_001510         GRID2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   29800923       30412996  NM_001282472       GOLGA8J
1  chr15   29800923       30412996  NM_001301025          TJP1
4  chr15   29800923       30412996     NM_015307      FAM189A1
5  chr15   29800923       30412996     NR_026859        ULK4P3
6  chr15   29800923       30412996     NR_135221  LOC100130111
7   chr2   78316851       78416968     NR_110287  LOC101927948
8   chr2   78316851       78416968     NR_110288  LOC101927967,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12760152       12937733  NM_001013631      HNRNPCL1
1    chr1   12760152       12937733  NM_001080830      PRAMEF12
2    chr1   12760152       12937733  NM_001103170       AADACL3
3    chr1   12760152       12937733  NM_001146181      HNRNPCL3
4    chr1   12760152       12937733  NM_001146344      PRAMEF11
5    chr1   12760152       12937733  NM_001294139       PRAMEF1
6    chr1   12760152       12937733  NM_001302551      HNRNPCL4
8    chr1   12760152       12937733     NM_023014       PRAMEF2
9    chr1   12760152       12937733     NM_152290      C1orf158
10  chr16   14674255       15072322  NM_001134477          PARN
11  chr16   14674255       15072322  NM_001277323        NPIPA3
13  chr16   14674255       15072322  NM_001277324        NPIPA2
15  chr16   14674255       15072322  NM_001285445        PDXDC1
21  chr16   14674255       15072322     NM_006985        NPIPA1
22  chr16   14674255       15072322     NM_014287         NOMO1
23  chr16   14674255       15072322     NM_016561          BFAR
24  chr16   14674255       15072322     NR_023387       ABCC6P2
25  chr16   14674255       15072322     NR_036140     MIR3179-1
26  chr16   14674255       15072322     NR_036141     MIR3180-1
27  chr16   14674255       15072322     NR_036142     MIR3180-2
28  chr16   14674255       15072322     NR_103772  LOC100288162
29  chr16   14674255       15072322     NR_106970     MIR6511A3
30  chr16   14674255       15072322     NR_107060     MIR6770-2
31  chr16   14674255       15072322     NR_128713     MIR3670-4
32  chr16   14674255       15072322     NR_133651       PLA2G10
33   chr4  128314462      129117694  NM_001190801          PLK4
34   chr4  128314462      129117694  NM_001278604        LARP1B
35   chr4  128314462      129117694  NM_001317381        HSPA4L
38   chr4  128314462      129117694  NM_001318467      SLC25A31
39   chr4  128314462      129117694  NM_001319305        ABHD18
41   chr4  128314462      129117694     NM_015693          INTU
43   chr4  128314462      129117694     NM_152778         MFSD8
45   chr7  110637524      111122784  NM_001099658         LRRN3
46   chr7  110637524      111122784  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11    7611082        7723107  NM_001256568   PPFIBP2
2   chr11    7611082        7723107  NM_001302826    CYB5R2
6   chr11    7611082        7723107     NM_198185     OVCH2
7   chr11   40670215       40917878  NM_001258419    LRRC4C
8   chr11   55784277       55920786  NM_001001921    OR5AS1
9   chr11   55784277       55920786  NM_001003750     OR8I2
10  chr11   55784277       55920786  NM_001004064     OR8J3
11  chr11   55784277       55920786  NM_001005200     OR8H2
12  chr11   55784277       55920786  NM_001005201     OR8H3
13  chr11  131433530      131583414  NM_001048209       NTM
14  chr11  131433530      131583414     NR_126159   NTM-AS1
15  chr12   85421550       86122907  NM_001079910    LRRIQ1
16  chr12   85421550       86122907  NM_001100917   TSPAN19
17  chr12   85421550       86122907     NM_006982      ALX1
18  chr14   21687544       21847914     NM_007192   SUPT16H
19  chr14   21687544       21847914     NM_020366   RPGRIP1
20  chr14   21687544       21847914     NM_031314    HNRNPC
21   chr3    6065938        6857094     NR_110123  GRM7-AS3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21907014       22265277  NM_001001912        OR4E2
1   chr14   21907014       22265277  NM_001005465       OR10G3
2   chr14   21907014       22265277  NM_001005466       OR10G2
3   chr14   21907014       22265277  NM_001163380        RAB2B
4   chr14   21907014       22265277  NM_001303523         TOX4
5   chr14   21907014       22265277  NM_001317107        OR4E1
6   chr14   21907014       22265277     NM_019852       METTL3
8   chr14   21907014       22265277     NR_111966        SALL2
10   chr2   25039307       25877400  NM_001198559      DNAJC27
11   chr2   25039307       25877400  NM_001256304         DTNB
13   chr2   25039307       25877400  NM_001319099        EFR3B
14   chr2   25039307       25877400  NM_001319205         POMC
15   chr2   25039307       25877400  NM_001320613        ADCY3
16   chr2   25039307       25877400  NM_001320892       DNMT3A
20   chr2   25039307       25877400  NM_001322101        CENPO
27   chr2   25039307       25877400     NR_031570      MIR1301
28   chr2   25039307       25877400     NR_034113  DNAJC27-AS1
29   chr2   25039307       25877400     NR_132378    LINC01381
30   chr2   97285724       97388434  NM_001115016       KANSL3
31   chr2   97285724       97388434  NM_001293083       FER1L5
32   chr2   97285724       97388434  NM_001322354       LMAN2L
35  chr20   14848273       15023697     NM_080676      MACROD2
36  chr20   14848273       15023697     NR_037841  MACROD2-AS1
38   chr5      92765         213895  NM_001080478      LRRC14B
39   chr5      92765         213895     NM_052909     PLEKHG4B
40   chr5      92765         213895     NM_145265      CCDC127
41   chr5  146443023      146662247  NM_001112724       STK32A
42   chr5  146443023      146662247  NM_001271899      PPP2R2B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21893762       22148237  NM_001001912         OR4E2
1   chr14   21893762       22148237  NM_001005465        OR10G3
2   chr14   21893762       22148237  NM_001005466        OR10G2
3   chr14   21893762       22148237  NM_001163380         RAB2B
4   chr14   21893762       22148237  NM_001170629          CHD8
5   chr14   21893762       22148237  NM_001303523          TOX4
6   chr14   21893762       22148237  NM_001317107         OR4E1
7   chr14   21893762       22148237     NM_019852        METTL3
10  chr14   21893762       22148237     NR_111966         SALL2
12  chr15   82738410       84317409  NM_001007122          FSD2
13  chr15   82738410       84317409  NM_001079533         CPEB1
14  chr15   82738410       84317409  NM_001080435         WHAMM
15  chr15   82738410       84317409  NM_001160113      C15orf40
19  chr15   82738410       84317409  NM_001164465     GOLGA6L10
21  chr15   82738410       84317409  NM_001291420      GOLGA6L9
22  chr15   82738410       84317409  NM_001301206          BNC1
24  chr15   82738410       84317409  NM_001324186        SH3GL3
26  chr15   82738410       84317409  NM_001330385        TM6SF1
28  chr15   82738410       84317409     NM_004644         AP3B2
29  chr15   82738410       84317409     NM_004839        HOMER2
30  chr15   82738410       84317409     NM_016073       HDGFRP3
32  chr15   82738410       84317409     NM_025238         BTBD1
34  chr15   82738410       84317409     NM_031452      FAM103A1
36  chr15   82738410       84317409     NR_003011      SCARNA15
37  chr15   82738410       84317409     NR_004847      UBE2Q2P2
38  chr15   82738410       84317409     NR_026811     GOLGA2P10
41  chr15   82738410       84317409     NR_034139     LOC338963
42  chr15   82738410       84317409     NR_036446      ACTG1P17
43  chr15   82738410       84317409     NR_039740       MIR4515
44  chr15   82738410       84317409     NR_045529     ADAMTS7P1
45  chr15   82738410       84317409     NR_046096     CPEB1-AS1
46  chr15   82738410       84317409     NR_102747     LOC727751
48  chr15   82738410       84317409     NR_110098        SNHG21
50  chr15   82738410       84317409     NR_111943         RPS17
54  chr15   82738410       84317409     NR_111962    GOLGA6L17P
55  chr15   82738410       84317409     NR_120378  LOC102724034
56   chr3    4202534        4607329  NM_001164675         SUMF1
57   chr3    4202534        4607329  NM_001168272         ITPR1
58   chr3    4202534        4607329  NM_001243723        SETMAR
60   chr3    4202534        4607329     NR_108075     ITPR1-AS1
61   chr4  188268340      188384707     NR_038931     LOC339975,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143158102      143317711     NR_110761  LOC102723769
1   chr11   67346446       67499282     NM_000695       ALDH3B2
2   chr11   67346446       67499282     NM_000852         GSTP1
4   chr11   67346446       67499282  NM_001166102        NDUFV1
5   chr11   67346446       67499282  NM_001243750         NUDT8
6   chr11   67346446       67499282     NM_005995         TBX10
7   chr11   67346446       67499282     NM_080658          ACY3
9   chr11   67346446       67499282     NR_033791        DOC2GP
10  chr11   67346446       67499282     NR_130935      C11orf72
11   chr2   97202806       97374416  NM_001115016        KANSL3
12   chr2   97202806       97374416  NM_001293083        FER1L5
13   chr2   97202806       97374416  NM_001319085        ARID5A
15   chr2   97202806       97374416  NM_001322354        LMAN2L
18  chr22   19021782       19785372     NM_000407         GP1BB
19  chr22   19021782       19785372  NM_001009939         SEPT5
20  chr22   19021782       19785372  NM_001035247         UFD1L
21  chr22   19021782       19785372  NM_001166242      C22orf39
22  chr22   19021782       19785372  NM_001178010         CDC45
23  chr22   19021782       19785372  NM_001184781         DGCR2
24  chr22   19021782       19785372  NM_001256534       SLC25A1
25  chr22   19021782       19785372  NM_001318151        MRPL40
27  chr22   19021782       19785372     NM_001835        CLTCL1
29  chr22   19021782       19785372     NM_003277         CLDN5
30  chr22   19021782       19785372     NM_003325          HIRA
32  chr22   19021782       19785372     NM_005315          GSC2
34  chr22   19021782       19785372     NM_005992          TBX1
35  chr22   19021782       19785372     NM_022719        DGCR14
36  chr22   19021782       19785372     NM_053004         GNB1L
37  chr22   19021782       19785372     NM_053006         TSSK2
41  chr22   19021782       19785372     NR_024157        DGCR11
42  chr22   19021782       19785372     NR_024381     LINC00895
43  chr22   19021782       19785372     NR_037611   SEPT5-GP1BB
45  chr22   19021782       19785372     NR_103767     LINC01311,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21755715       22192212  NM_001001912     OR4E2
1   chr14   21755715       22192212  NM_001005465    OR10G3
2   chr14   21755715       22192212  NM_001005466    OR10G2
3   chr14   21755715       22192212  NM_001163380     RAB2B
4   chr14   21755715       22192212  NM_001170629      CHD8
5   chr14   21755715       22192212  NM_001303523      TOX4
6   chr14   21755715       22192212  NM_001317107     OR4E1
7   chr14   21755715       22192212     NM_007192   SUPT16H
8   chr14   21755715       22192212     NM_019852    METTL3
9   chr14   21755715       22192212     NM_020366   RPGRIP1
12  chr14   21755715       22192212     NR_002916    SNORD8
13  chr14   21755715       22192212     NR_003029    SNORD9
14  chr14   21755715       22192212     NR_111966     SALL2
16  chr16   68616015       68719613  NM_001317195      CDH3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10    7125683        7266148  NM_001018039    SFMBT2
2   chr10    7125683        7266148     NR_132972  SNORD129
3   chr10   67965665       68102638  NM_001127384    CTNNA3
5   chr14   21833103       22092248  NM_001005465    OR10G3
6   chr14   21833103       22092248  NM_001163380     RAB2B
7   chr14   21833103       22092248  NM_001170629      CHD8
8   chr14   21833103       22092248  NM_001303523      TOX4
9   chr14   21833103       22092248     NM_007192   SUPT16H
10  chr14   21833103       22092248     NM_019852    METTL3
13  chr14   21833103       22092248     NR_002916    SNORD8
14  chr14   21833103       22092248     NR_003029    SNORD9
15  chr14   21833103       22092248     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21830554       22348964  NM_001001912         OR4E2
1   chr14   21830554       22348964  NM_001005465        OR10G3
2   chr14   21830554       22348964  NM_001005466        OR10G2
3   chr14   21830554       22348964  NM_001163380         RAB2B
4   chr14   21830554       22348964  NM_001170629          CHD8
5   chr14   21830554       22348964  NM_001303523          TOX4
6   chr14   21830554       22348964  NM_001317107         OR4E1
7   chr14   21830554       22348964     NM_007192       SUPT16H
8   chr14   21830554       22348964     NM_019852        METTL3
11  chr14   21830554       22348964     NR_002916        SNORD8
12  chr14   21830554       22348964     NR_003029        SNORD9
13  chr14   21830554       22348964     NR_111966         SALL2
15  chr22   20131199       20535994  NM_001242313      TMEM191B
16  chr22   20131199       20535994  NM_001243537       CCDC188
17  chr22   20131199       20535994     NM_013373        ZDHHC8
18  chr22   20131199       20535994     NM_015672        RIMBP3
19  chr22   20131199       20535994     NM_023004         RTN4R
20  chr22   20131199       20535994     NM_033257        DGCR6L
21  chr22   20131199       20535994     NR_003563       PI4KAP1
22  chr22   20131199       20535994     NR_026919     LINC00896
23  chr22   20131199       20535994     NR_031618       MIR1286
24  chr22   20131199       20535994     NR_038460     LOC284865
25  chr22   20131199       20535994     NR_136560       FAM230A
26  chr22   20131199       20535994     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   11567965       12023970  NM_001080491        USP6NL
2   chr10   11567965       12023970     NM_015542          UPF2
3   chr10   11567965       12023970     NM_024693        ECHDC3
5   chr10   11567965       12023970     NM_153256       PROSER2
6   chr10   11567965       12023970     NR_038222   PROSER2-AS1
8   chr16   16405842       16517292  NM_001282511        NPIPA8
9   chr16   16405842       16517292     NR_036447        PKD1P1
10  chr16   16405842       16517292     NR_103772  LOC100288162
11  chr16   16405842       16517292     NR_106766     MIR6511A1
12  chr16   16405842       16517292     NR_106971     MIR6511A4
13  chr16   16405842       16517292     NR_107060     MIR6770-2
14  chr22   20093951       20222620  NM_001190326         DGCR8
15  chr22   20093951       20222620  NM_001243537       CCDC188
16  chr22   20093951       20222620  NM_001278639        RANBP1
19  chr22   20093951       20222620     NM_013373        ZDHHC8
20  chr22   20093951       20222620     NM_022727        TRMT2A
21  chr22   20093951       20222620     NR_026919     LINC00896
22  chr22   20093951       20222620     NR_038460     LOC284865
23  chr22   20093951       20222620     NR_106874       MIR6816
24   chr4  190373222      190611919     NR_121679     LINC01262
25   chr4  190373222      190611919     NR_135513  LOC105379514,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   62480540       62618304     NM_178539   FAM19A2
1  chr14   21814775       21956354  NM_001163380     RAB2B
2  chr14   21814775       21956354  NM_001170629      CHD8
3  chr14   21814775       21956354  NM_001303523      TOX4
4  chr14   21814775       21956354     NM_007192   SUPT16H
5  chr14   21814775       21956354     NM_020366   RPGRIP1
8  chr14   21814775       21956354     NR_002916    SNORD8
9  chr14   21814775       21956354     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21816515       21939776  NM_001163380     RAB2B
1   chr14   21816515       21939776  NM_001170629      CHD8
2   chr14   21816515       21939776     NM_007192   SUPT16H
3   chr14   21816515       21939776     NM_020366   RPGRIP1
6   chr14   21816515       21939776     NR_002916    SNORD8
7   chr14   21816515       21939776     NR_003029    SNORD9
8   chr19   24300904       24479469  NM_001278661    ZNF254
10  chr19   24300904       24479469     NR_003603  HAVCR1P1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21848376       21963774  NM_001163380     RAB2B
1   chr14   21848376       21963774  NM_001170629      CHD8
2   chr14   21848376       21963774  NM_001303523      TOX4
3   chr14   21848376       21963774     NM_007192   SUPT16H
6   chr14   21848376       21963774     NR_002916    SNORD8
7   chr14   21848376       21963774     NR_003029    SNORD9
8   chr15   26946361       27110447  NM_001191320    GABRB3
11   chr7  110758307      111251515  NM_001099658     LRRN3
12   chr7  110758307      111251515  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   59064355       59173011  NM_001085487         MYSM1
1    chr1  143600914      144106268  NM_001123068       PPIAL4G
2    chr1  143600914      144106268  NM_001287385        FAM72C
3    chr1  143600914      144106268  NM_001345942        FAM72D
7    chr1  143600914      144106268     NR_104014     LINC01138
8    chr1  143600914      144106268     NR_106967       MIR6077
9    chr1  143600914      144106268     NR_111930  LOC100132057
11  chr15   20978310       21578513  NM_001277303        POTEB2
12  chr15   20978310       21578513     NM_207355        POTEB3
13  chr15   20978310       21578513     NR_028506         NF1P2
14  chr15   20978310       21578513     NR_036062     MIR3118-2
15  chr15   20978310       21578513     NR_040094     LINC01193
16  chr15   20978310       21578513     NR_049895     MIR5701-2
18  chr16   76745852       77125789     NR_039870       MIR4719
19  chr22   18983394       19126125  NM_001184781         DGCR2
20  chr22   18983394       19126125     NM_022719        DGCR14
21  chr22   18983394       19126125     NM_053006         TSSK2
22  chr22   18983394       19126125     NR_024157        DGCR11
23  chr22   18983394       19126125     NR_024159         DGCR9
24  chr22   18983394       19126125     NR_026651        DGCR10
25  chr22   18983394       19126125     NR_110533         DGCR5
26   chr5   22785435       22898318     NM_004061         CDH12,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143663075      146471501  NM_001002810       PDE4DIP
3    chr1  143663075      146471501  NM_001012758        NUDT17
4    chr1  143663075      146471501  NM_001039888      ANKRD34A
5    chr1  143663075      146471501  NM_001097612        GPR89A
6    chr1  143663075      146471501  NM_001101663        NBPF11
7    chr1  143663075      146471501  NM_001123068       PPIAL4G
8    chr1  143663075      146471501  NM_001135789       PPIAL4C
9    chr1  143663075      146471501  NM_001184795        PEX11B
14   chr1  143663075      146471501  NM_001201325         PDZK1
15   chr1  143663075      146471501  NM_001277444         NBPF9
16   chr1  143663075      146471501  NM_001278141        NBPF12
17   chr1  143663075      146471501  NM_001278267        NBPF20
18   chr1  143663075      146471501  NM_001280799       ANKRD35
19   chr1  143663075      146471501  NM_001287385        FAM72C
20   chr1  143663075      146471501  NM_001302371        NBPF10
21   chr1  143663075      146471501  NM_001303040        ITGA10
22   chr1  143663075      146471501  NM_001303456        POLR3C
23   chr1  143663075      146471501  NM_001313972         TXNIP
24   chr1  143663075      146471501  NM_001345942        FAM72D
28   chr1  143663075      146471501     NM_004892        SEC22B
29   chr1  143663075      146471501     NM_005105         RBM8A
30   chr1  143663075      146471501     NM_006099         PIAS3
33   chr1  143663075      146471501     NM_007053         CD160
34   chr1  143663075      146471501     NM_014455        RNF115
36   chr1  143663075      146471501     NM_032305       POLR3GL
37   chr1  143663075      146471501     NM_145277          HFE2
38   chr1  143663075      146471501     NM_153713         LIX1L
39   chr1  143663075      146471501     NM_203458      NOTCH2NL
41   chr1  143663075      146471501     NR_002328        GNRHR2
42   chr1  143663075      146471501     NR_003242        PFN1P2
43   chr1  143663075      146471501     NR_024511     LINC00623
46   chr1  143663075      146471501     NR_102405         NBPF8
47   chr1  143663075      146471501     NR_104014     LINC01138
50   chr1  143663075      146471501     NR_104217       NBPF25P
52   chr1  143663075      146471501     NR_106794       MIR6736
53   chr1  143663075      146471501     NR_106967       MIR6077
55   chr1  143663075      146471501     NR_111930  LOC100132057
56   chr1  143663075      146471501     NR_111936       PDZK1P1
57   chr1  143663075      146471501     NR_111953     LINC00869
58   chr1  143663075      146471501     NR_125967  LOC101928979
59   chr1  143663075      146471501     NR_135559  LOC100505824
61   chr2   97133876       97437561  NM_001115016        KANSL3
62   chr2   97133876       97437561  NM_001285485        NEURL3
63   chr2   97133876       97437561  NM_001293083        FER1L5
64   chr2   97133876       97437561  NM_001319085        ARID5A
66   chr2   97133876       97437561  NM_001322354        LMAN2L
67   chr2   97133876       97437561     NM_020184         CNNM4
71   chr2   97133876       97437561     NR_135564  LOC105373496
72  chr21   22595161       24125767     NM_004540         NCAM2
73  chr21   22595161       24125767     NR_038400     LINC00308
74  chr21   22595161       24125767     NR_038872     LINC00317
75  chr21   22595161       24125767     NR_109958     LINC01425
76  chr21   22595161       24125767     NR_109959  LOC101927843
77   chr4   98841873       98988125     NM_174952         STPG2
78   chr9   41439134       41648490  NM_001113541     SPATA31A5
79   chr9   41439134       41648490     NM_015667     SPATA31A7
80   chr9   41439134       41648490     NR_003528       ZNF658B
81   chr9   41439134       41648490     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   21855464       21981433  NM_001163380      RAB2B
1  chr14   21855464       21981433  NM_001170629       CHD8
2  chr14   21855464       21981433  NM_001303523       TOX4
3  chr14   21855464       21981433     NM_019852     METTL3
6  chr14   21855464       21981433     NR_002916     SNORD8
7  chr14   21855464       21981433     NR_003029     SNORD9
8  chr16   29520648       29672427     NR_049833  MIR3680-2
9  chr16   29520648       29672427     NR_135305     SMG1P2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21796114       21896878  NM_001170629          CHD8
1   chr14   21796114       21896878     NM_007192       SUPT16H
2   chr14   21796114       21896878     NM_020366       RPGRIP1
4   chr14   21796114       21896878     NR_002916        SNORD8
5   chr14   21796114       21896878     NR_003029        SNORD9
6   chr14   42084908       42305212  NM_001346175         LRFN5
7   chr16   12172254       12921154  NM_001099455        CPPED1
8   chr16   12172254       12921154     NM_032167         SNX29
9   chr16   12172254       12921154     NR_039869       MIR4718
10   chr7   64086348       64270190  NM_001160183        ZNF138
11   chr7   64086348       64270190  NM_001282360        ZNF107
14   chr7   64086348       64270190     NR_106898       MIR6839
15   chr9   95696303       95802759  NM_001083536          FGD3
18   chr9   95696303       95802759     NR_121565  LOC101927954,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145355267      145524293  NM_001039888      ANKRD34A
1    chr1  145355267      145524293  NM_001184795        PEX11B
2    chr1  145355267      145524293  NM_001277444         NBPF9
3    chr1  145355267      145524293  NM_001278267        NBPF20
4    chr1  145355267      145524293  NM_001302371        NBPF10
5    chr1  145355267      145524293  NM_001313972         TXNIP
7    chr1  145355267      145524293     NM_005105         RBM8A
9    chr1  145355267      145524293     NM_032305       POLR3GL
10   chr1  145355267      145524293     NM_145277          HFE2
11   chr1  145355267      145524293     NM_153713         LIX1L
12   chr1  145355267      145524293     NR_002328        GNRHR2
16   chr1  145355267      145524293     NR_104217       NBPF25P
17   chr1  145355267      145524293     NR_125967  LOC101928979
18  chr15   28533968       28997137  NM_001282468       GOLGA8M
19  chr15   28533968       28997137     NM_004667         HERC2
20  chr15   28533968       28997137     NR_026589       WHAMMP2
21  chr15   28533968       28997137     NR_033351       GOLGA8F
23  chr15   28533968       28997137     NR_033353       GOLGA8G
25  chr15   28533968       28997137     NR_036443       HERC2P9
26  chr15   28533968       28997137     NR_039734     MIR4509-3
28  chr21   22361653       22514590     NM_004540         NCAM2
29   chr3    4069483        4415152  NM_001164675         SUMF1
30   chr3    4069483        4415152  NM_001243723        SETMAR
32   chr4  125325336      125677451  NM_001167882       ANKRD50
34   chr4  125325336      125677451     NR_110838  LOC101927087
35   chr4  190432533      190679196     NR_121679     LINC01262
36   chr4  190432533      190679196     NR_135513  LOC105379514
37   chr9   11964944       12950523     NM_000550         TYRP1
38   chr9   11964944       12950523     NM_203403       LURAP1L
39   chr9   11964944       12950523     NR_125775   LURAP1L-AS1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr12   80957399       81358533  NM_001145026        PTPRQ
1   chr12   80957399       81358533  NM_001324423        LIN7A
2   chr12   80957399       81358533     NM_002469         MYF6
3   chr12   80957399       81358533     NM_005593         MYF5
4   chr12   80957399       81358533     NR_030348       MIR617
5   chr12   80957399       81358533     NR_030349       MIR618
6   chr12   80957399       81358533     NR_120468    LINC01490
7   chr16   61832523       61970256     NM_001796         CDH8
8   chr20   14875090       15146041     NM_080676      MACROD2
9   chr20   14875090       15146041     NR_037841  MACROD2-AS1
11  chr22   19001657       19320046  NM_001184781        DGCR2
12  chr22   19001657       19320046  NM_001256534      SLC25A1
13  chr22   19001657       19320046     NM_001835       CLTCL1
14  chr22   19001657       19320046     NM_003325         HIRA
15  chr22   19001657       19320046     NM_005315         GSC2
17  chr22   19001657       19320046     NM_022719       DGCR14
18  chr22   19001657       19320046     NM_053006        TSSK2
19  chr22   19001657       19320046     NR_024157       DGCR11
20  chr22   19001657       19320046     NR_024159        DGCR9
21  chr22   19001657       19320046     NR_026651       DGCR10
22  chr22   19001657       19320046     NR_103767    LINC01311
23  chr22   19001657       19320046     NR_110533        DGCR5
24   chr4   71341795       71862356     NM_000788          DCK
25   chr4   71341795       71862356  NM_001037442        RUFY3
26   chr4   71341795       71862356  NM_001098477        GRSF1
28   chr4   71341795       71862356  NM_001145006         MUC7
30   chr4   71341795       71862356  NM_001244766        MOB1B
32   chr4   71341795       71862356  NM_001286731         AMTN
37   chr4   71341795       71862356     NM_016519         AMBN
38   chr4   71341795       71862356     NM_020368         UTP3
39   chr4   71341795       71862356     NM_031889         ENAM
40   chr4   71341795       71862356     NM_144646       JCHAIN
42   chr9   30356815       30482111     NR_046204    LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81486924       83965060     NM_000429         MAT1A
1   chr10   81486924       83965060  NM_001010848          NRG3
2   chr10   81486924       83965060  NM_001012973         PLAC9
3   chr10   81486924       83965060  NM_001128309       TSPAN14
4   chr10   81486924       83965060  NM_001145719        SH2D4B
6   chr10   81486924       83965060  NM_001243778       FAM213A
9   chr10   81486924       83965060  NM_001269053         DYDC1
10  chr10   81486924       83965060  NM_001270041         DYDC2
12  chr10   81486924       83965060  NM_001270367       TMEM254
15  chr10   81486924       83965060  NM_001278407        ANXA11
18  chr10   81486924       83965060     NM_003019         SFTPD
21  chr10   81486924       83965060     NR_002724         MBL1P
22  chr10   81486924       83965060     NR_027431   TMEM254-AS1
23  chr10   81486924       83965060     NR_029407     LOC642361
24  chr10   81486924       83965060     NR_033857       BMS1P21
25  chr10   81486924       83965060     NR_038464     LINC00857
26  chr10   81486924       83965060     NR_120611    NUTM2B-AS1
29  chr10   81486924       83965060     NR_120661  LOC101929574
30  chr10   81486924       83965060     NR_120662  LOC102723703
31  chr10   81486924       83965060     NR_136612  LOC100130698
33  chr11    4545414        4804454  NM_001004137        OR52M1
34  chr11    4545414        4804454  NM_001004751        OR51D1
35  chr11    4545414        4804454  NM_001004752        OR51F1
36  chr11    4545414        4804454  NM_001005169        OR52I1
37  chr11    4545414        4804454  NM_001005170        OR52I2
38  chr11    4545414        4804454     NM_018073        TRIM68
39  chr11    4545414        4804454     NM_030774        OR51E2
40  chr11    4545414        4804454     NM_144663      C11orf40
41  chr11    4545414        4804454     NM_152430        OR51E1
42  chr14   21745014       22025883  NM_001163380         RAB2B
43  chr14   21745014       22025883  NM_001170629          CHD8
44  chr14   21745014       22025883  NM_001303523          TOX4
45  chr14   21745014       22025883     NM_007192       SUPT16H
46  chr14   21745014       22025883     NM_019852        METTL3
47  chr14   21745014       22025883     NM_020366       RPGRIP1
50  chr14   21745014       22025883     NR_002916        SNORD8
51  chr14   21745014       22025883     NR_003029        SNORD9
52  chr14   21745014       22025883     NR_111966         SALL2
54  chr20   14651887       14999657     NM_080676       MACROD2
55  chr20   14651887       14999657     NR_037841   MACROD2-AS1
57   chr3  197216454      197417552  NM_001145642         RUBCN
59   chr3  197216454      197417552     NM_203314          BDH1
61   chr3  197216454      197417552     NR_003266     LOC220729
62   chr3  197216454      197417552     NR_030627        MIR922
63   chr8  124948807      125065748  NM_001039112        FER1L6
64   chr8  124948807      125065748     NR_040044    FER1L6-AS1
65   chr8  124948807      125065748     NR_103547    FER1L6-AS2
66   chr9   38990749       39138062     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  104177207      104368822  NM_001008218         AMY1B
3    chr1  104177207      104368822  NM_001008219         AMY1C
6    chr1  104177207      104368822  NM_001008221         AMY1A
12  chr14   21771625       21975032  NM_001163380         RAB2B
13  chr14   21771625       21975032  NM_001170629          CHD8
14  chr14   21771625       21975032  NM_001303523          TOX4
15  chr14   21771625       21975032     NM_007192       SUPT16H
16  chr14   21771625       21975032     NM_019852        METTL3
17  chr14   21771625       21975032     NM_020366       RPGRIP1
20  chr14   21771625       21975032     NR_002916        SNORD8
21  chr14   21771625       21975032     NR_003029        SNORD9
22  chr15   25802537       26250508     NM_024490        ATP10A
23  chr15   25802537       26250508     NR_039865       MIR4715
24  chr15   25802537       26250508     NR_040082  LOC100128714
25   chr4   66740950       67704140     NR_031673      MIR1269A
26   chr8  111847250      112022275     NR_125416     LINC01608,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28715512       29318416  NM_001130414         APBA2
1   chr15   28715512       29318416  NM_001282468       GOLGA8M
2   chr15   28715512       29318416     NR_026589       WHAMMP2
3   chr15   28715512       29318416     NR_033351       GOLGA8F
4   chr15   28715512       29318416     NR_033353       GOLGA8G
5   chr15   28715512       29318416     NR_036443       HERC2P9
6   chr15   28715512       29318416     NR_036475  LOC100289656
7   chr15   28715512       29318416     NR_037599     PDCD6IPP2
8   chr15   28715512       29318416     NR_039734     MIR4509-3
9   chr15   28715512       29318416     NR_047567     GOLGA6L7P
10  chr16    6390349        6848656  NM_001142334        RBFOX1
13  chr20   41065662       42288527  NM_001199264          SGK2
14  chr20   41065662       42288527  NM_001323580         IFT52
15  chr20   41065662       42288527     NM_015478       L3MBTL1
18  chr20   41065662       42288527     NM_133170         PTPRT
20  chr20   41065662       42288527     NR_034009         SRSF6
21  chr20   41065662       42288527     NR_110004  LOC101927159,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  135260805      135522050     NM_000773     CYP2E1
1   chr10  135260805      135522050  NM_001080998      FRG2B
2   chr10  135260805      135522050  NM_001143763      SYCE1
5   chr10  135260805      135522050     NR_002934     SCART1
6   chr10  135260805      135522050     NR_033789     SPRNP1
7    chr3    1716833        3128029  NM_001206955      CNTN4
10   chr3    1716833        3128029     NM_175726      IL5RA
11   chr3    1716833        3128029     NR_046554  CNTN4-AS1
12   chr3    1716833        3128029     NR_046555  CNTN4-AS2
13   chr6  162881667      163399959  NM_001080378      PACRG
15   chr6  162881667      163399959     NM_013988      PARK2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21905335       22037416  NM_001163380     RAB2B
1  chr14   21905335       22037416  NM_001303523      TOX4
2  chr14   21905335       22037416     NM_019852    METTL3
3  chr14   21905335       22037416     NM_020920      CHD8
5  chr14   21905335       22037416     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48258991       49687490  NM_001004702         OR4C3
1   chr11   48258991       49687490  NM_001004725         OR4S1
2   chr11   48258991       49687490  NM_001004726         OR4X1
3   chr11   48258991       49687490  NM_001004727         OR4X2
4   chr11   48258991       49687490  NM_001005512        OR4A47
5   chr11   48258991       49687490  NM_001005513        OR4C45
6   chr11   48258991       49687490  NM_001193472         FOLH1
7   chr11   48258991       49687490  NM_001206626       TRIM49B
8   chr11   48258991       49687490  NM_001206631       TRIM64C
9   chr11   48258991       49687490     NR_027044     LOC440040
10  chr16   16383795       16530730  NM_001004067         NOMO3
11  chr16   16383795       16530730  NM_001282511        NPIPA8
12  chr16   16383795       16530730     NR_036140     MIR3179-1
13  chr16   16383795       16530730     NR_036141     MIR3180-1
14  chr16   16383795       16530730     NR_036142     MIR3180-2
15  chr16   16383795       16530730     NR_036447        PKD1P1
16  chr16   16383795       16530730     NR_103772  LOC100288162
17  chr16   16383795       16530730     NR_106766     MIR6511A1
18  chr16   16383795       16530730     NR_106971     MIR6511A4
19  chr16   16383795       16530730     NR_107060     MIR6770-2
20  chr16   16383795       16530730     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143624509      144923031  NM_001002811       PDE4DIP
2    chr1  143624509      144923031  NM_001123068       PPIAL4G
3    chr1  143624509      144923031  NM_001135789       PPIAL4C
6    chr1  143624509      144923031  NM_001277444         NBPF9
7    chr1  143624509      144923031  NM_001278267        NBPF20
8    chr1  143624509      144923031  NM_001287385        FAM72C
9    chr1  143624509      144923031  NM_001345942        FAM72D
13   chr1  143624509      144923031     NR_003242        PFN1P2
14   chr1  143624509      144923031     NR_024511     LINC00623
16   chr1  143624509      144923031     NR_102405         NBPF8
17   chr1  143624509      144923031     NR_104014     LINC01138
18   chr1  143624509      144923031     NR_106967       MIR6077
19   chr1  143624509      144923031     NR_111930  LOC100132057
20   chr1  143624509      144923031     NR_111953     LINC00869
22  chr21   22906307       23135526     NM_004540         NCAM2
23  chr21   22906307       23135526     NR_038872     LINC00317
24  chr21   22906307       23135526     NR_109958     LINC01425
25   chr4    9019389        9753351  NM_001040448       DEFB131
26   chr4    9019389        9753351  NM_001242326      USP17L25
34   chr4    9019389        9753351  NM_001256852      USP17L10
35   chr4    9019389        9753351  NM_001256853      USP17L12
37   chr4    9019389        9753351  NM_001256854      USP17L11
40   chr4    9019389        9753351  NM_001256855      USP17L13
41   chr4    9019389        9753351  NM_001256857      USP17L17
42   chr4    9019389        9753351  NM_001256860      USP17L19
43   chr4    9019389        9753351  NM_001256861      USP17L20
44   chr4    9019389        9753351  NM_001256894      USP17L15
45   chr4    9019389        9753351     NR_027279      USP17L6P
46   chr4    9019389        9753351     NR_031688      MIR548I2
47   chr4    9019389        9753351     NR_046416      USP17L9P
48   chr4    9079281        9565690  NM_001040448       DEFB131
49   chr4    9079281        9565690  NM_001242326      USP17L25
57   chr4    9079281        9565690  NM_001256852      USP17L10
58   chr4    9079281        9565690  NM_001256853      USP17L12
60   chr4    9079281        9565690  NM_001256854      USP17L11
63   chr4    9079281        9565690  NM_001256855      USP17L13
64   chr4    9079281        9565690  NM_001256857      USP17L17
65   chr4    9079281        9565690  NM_001256860      USP17L19
66   chr4    9079281        9565690  NM_001256861      USP17L20
67   chr4    9079281        9565690  NM_001256894      USP17L15
68   chr4    9079281        9565690     NR_027279      USP17L6P
69   chr4    9079281        9565690     NR_031688      MIR548I2
70   chr4    9079281        9565690     NR_046416      USP17L9P
71   chr4   71417216       71589877  NM_001037442         RUFY3
74   chr4   71417216       71589877     NM_016519          AMBN
75   chr4   71417216       71589877     NM_020368          UTP3
76   chr4   71417216       71589877     NM_031889          ENAM
77   chr4   71417216       71589877     NM_144646        JCHAIN
78   chr5   17760951       17935196     NR_134286     LOC646241
80   chr7  102154504      102388895  NM_001031618        SPDYE2
82   chr7  102154504      102388895  NM_001097615       POLR2J3
83   chr7  102154504      102388895  NM_001114403        UPK3BL
84   chr7  102154504      102388895  NM_001277335        RASA4B
86   chr7  102154504      102388895     NM_006989         RASA4
87   chr7  102154504      102388895     NM_032959       POLR2J2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143064819      144406599  NM_001123068       PPIAL4G
1    chr1  143064819      144406599  NM_001135789       PPIAL4C
2    chr1  143064819      144406599  NM_001278267        NBPF20
3    chr1  143064819      144406599  NM_001287385        FAM72C
4    chr1  143064819      144406599  NM_001345942        FAM72D
8    chr1  143064819      144406599     NR_024511     LINC00623
10   chr1  143064819      144406599     NR_104014     LINC01138
11   chr1  143064819      144406599     NR_106967       MIR6077
12   chr1  143064819      144406599     NR_110761  LOC102723769
13   chr1  143064819      144406599     NR_111930  LOC100132057
14   chr1  143064819      144406599     NR_111953     LINC00869
16  chr12   97965608       99046767  NM_001307975          TMPO
18  chr12   97965608       99046767     NM_005888       SLC25A3
19  chr12   97965608       99046767     NM_153687         IKBIP
20  chr12   97965608       99046767     NM_181869         APAF1
22  chr12   97965608       99046767     NR_003015       SNORA53
23  chr12   97965608       99046767     NR_027157      TMPO-AS1
24  chr12   97965608       99046767     NR_033801      SLC9A7P1
25  chr12   97965608       99046767     NR_036189       MIR4303
26  chr12   97965608       99046767     NR_038383     LOC643770
27  chr12   97965608       99046767     NR_039716       MIR4495
28  chr12   97965608       99046767     NR_077240     LOC643711
30  chr15   28230778       28333938     NM_000275          OCA2
32  chr16   76403420       76753890  NM_001322181       CNTNAP4
34  chr16   76403420       76753890     NR_110934  LOC101928203
35   chr2  242466611      242660506  NM_001164356         THAP4
36   chr2  242466611      242660506  NM_001165031         DTYMK
37   chr2  242466611      242660506  NM_001330161          ING5
41   chr2  242466611      242660506     NM_032515           BOK
42   chr2  242466611      242660506     NM_178326         ATG4B
43   chr2  242466611      242660506     NR_033346       BOK-AS1
44  chr20   14702811       14816110     NM_080676       MACROD2
45   chr3  155638950      155791903     NM_003875          GMPS
46   chr7   75334476       75662418     NM_000941           POR
47   chr7   75334476       75662418  NM_001040457        RHBDD2
48   chr7   75334476       75662418  NM_001243198          HIP1
49   chr7   75334476       75662418  NM_001317788        STYXL1
51   chr7   75334476       75662418     NM_002991         CCL24
52   chr7   75334476       75662418     NM_006072         CCL26
53   chr7   75334476       75662418     NM_031925      TMEM120A
54   chr7   75334476       75662418     NR_002955      SNORA14A
55   chr7   75334476       75662418     NR_039795       MIR4651,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr19   23817098       23930728     NM_138286     ZNF681
1   chr19   23817098       23930728     NM_138330     ZNF675
2    chr2   50780458       52118247  NM_001330079      NRXN1
5    chr2   50780458       52118247     NR_130470    MIR8485
6    chr2   50780458       52118247     NR_135237  LOC730100
7    chr3    2250736        2442540  NM_001206955      CNTN4
9    chr4  169201035      169301976  NM_001012967     DDX60L
10   chr4  169201035      169301976     NM_017631      DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12777923       12880783  NM_001080830      PRAMEF12
1    chr1   12777923       12880783  NM_001103170       AADACL3
2    chr1   12777923       12880783  NM_001294139       PRAMEF1
4    chr1   12777923       12880783     NM_152290      C1orf158
5   chr14   21909133       22261248  NM_001001912         OR4E2
6   chr14   21909133       22261248  NM_001005465        OR10G3
7   chr14   21909133       22261248  NM_001005466        OR10G2
8   chr14   21909133       22261248  NM_001163380         RAB2B
9   chr14   21909133       22261248  NM_001303523          TOX4
10  chr14   21909133       22261248  NM_001317107         OR4E1
11  chr14   21909133       22261248     NM_019852        METTL3
13  chr14   21909133       22261248     NR_111966         SALL2
15  chr14   37609703       37905875  NM_001171170      SLC25A21
16  chr14   37609703       37905875  NM_001195296        MIPOL1
17  chr14   37609703       37905875     NR_033240  SLC25A21-AS1
18  chr15   20634430       20832437  NM_001145004      GOLGA6L6
19  chr15   20634430       20832437     NR_027411      GOLGA8CP
20  chr15   20634430       20832437     NR_036432       HERC2P3
21  chr15   28550912       29216733  NM_001130414         APBA2
22  chr15   28550912       29216733  NM_001282468       GOLGA8M
23  chr15   28550912       29216733     NM_004667         HERC2
24  chr15   28550912       29216733     NR_026589       WHAMMP2
25  chr15   28550912       29216733     NR_033351       GOLGA8F
27  chr15   28550912       29216733     NR_033353       GOLGA8G
29  chr15   28550912       29216733     NR_036443       HERC2P9
30  chr15   28550912       29216733     NR_036475  LOC100289656
31  chr15   28550912       29216733     NR_037599     PDCD6IPP2
32  chr15   28550912       29216733     NR_039734     MIR4509-3
34  chr15   28550912       29216733     NR_047567     GOLGA6L7P
35  chr18   40226828       40427136     NM_002930          RIT2
36  chr18   40226828       40427136     NR_046174     LINC00907
37   chr2   50779430       50881623  NM_001330082         NRXN1
38   chr2   51215976       51477402  NM_001330079         NRXN1
41   chr2   51215976       51477402     NR_135237     LOC730100
42   chr2  133541091      133797264     NM_207363        NCKAP5
43   chr2  133541091      133797264     NR_135572  LOC101928185
44   chr9   41460114       41649966  NM_001113541     SPATA31A5
45   chr9   41460114       41649966     NM_015667     SPATA31A7
46   chr9   41460114       41649966     NR_003528       ZNF658B
47   chr9   41460114       41649966     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21815549       21961656  NM_001163380         RAB2B
1   chr14   21815549       21961656  NM_001170629          CHD8
2   chr14   21815549       21961656  NM_001303523          TOX4
3   chr14   21815549       21961656     NM_007192       SUPT16H
4   chr14   21815549       21961656     NM_020366       RPGRIP1
7   chr14   21815549       21961656     NR_002916        SNORD8
8   chr14   21815549       21961656     NR_003029        SNORD9
9   chr14   78331374       78552998  NM_001142545         ADCK1
10  chr20   14856441       14956639     NM_080676       MACROD2
11  chr20   14856441       14956639     NR_037841   MACROD2-AS1
13  chr20   25398413       25537369  NM_001318226          NINL
14  chr20   25398413       25537369     NM_021067         GINS1
15   chr4   11821527       12327111     NR_125910  LOC101929019
16   chr4   81829530       81961481     NM_001201          BMP3
17   chr4   81829530       81961481  NM_001206997       C4orf22
18   chr6  129236436      129514561  NM_001079823         LAMA2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   56523391       57180004  NM_001142770     PCDH15
3   chr14   21795598       21935270  NM_001163380      RAB2B
4   chr14   21795598       21935270  NM_001170629       CHD8
5   chr14   21795598       21935270     NM_007192    SUPT16H
6   chr14   21795598       21935270     NM_020366    RPGRIP1
9   chr14   21795598       21935270     NR_002916     SNORD8
10  chr14   21795598       21935270     NR_003029     SNORD9
11   chr3  197219066      197731806     NM_000996     RPL35A
12   chr3  197219066      197731806  NM_001011537     FYTTD1
13   chr3  197219066      197731806  NM_001145642      RUBCN
15   chr3  197219066      197731806  NM_001323027       IQCG
20   chr3  197219066      197731806     NM_032773      LRCH3
21   chr3  197219066      197731806     NM_033029       LMLN
22   chr3  197219066      197731806     NM_203314       BDH1
24   chr3  197219066      197731806     NR_003266  LOC220729
26   chr3  197219066      197731806     NR_030627     MIR922
27   chr4   69255490       69361931     NM_014058  TMPRSS11E
28   chr7  121674953      121798088  NM_001206838     PTPRZ1
29   chr7  121674953      121798088     NM_005763       AASS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68560285       68935644  NM_001127384        CTNNA3
3   chr10   68560285       68935644     NM_178011        LRRTM3
5   chr10   68560285       68935644     NR_111911  LOC101928961
6   chr14   21800655       21947876  NM_001163380         RAB2B
7   chr14   21800655       21947876  NM_001170629          CHD8
8   chr14   21800655       21947876  NM_001303523          TOX4
9   chr14   21800655       21947876     NM_007192       SUPT16H
10  chr14   21800655       21947876     NM_020366       RPGRIP1
13  chr14   21800655       21947876     NR_002916        SNORD8
14  chr14   21800655       21947876     NR_003029        SNORD9
15   chr2  214224525      214443000     NM_024532        SPAG16
16  chr20   14903486       15174482     NM_080676       MACROD2
17  chr20   14903486       15174482     NR_037841   MACROD2-AS1
19  chr21   23157723       23315041     NR_109958     LINC01425
20   chr4    3871307        5392736  NM_001040101          NSG1
21   chr4    3871307        5392736  NM_001145725          LYAR
22   chr4    3871307        5392736  NM_001297551       TMEM128
23   chr4    3871307        5392736  NM_001346282         STX18
25   chr4    3871307        5392736     NM_002448          MSX1
29   chr4    3871307        5392736     NM_018401        STK32B
30   chr4    3871307        5392736     NM_018659         CYTL1
31   chr4    3871307        5392736     NM_145291        ZBTB49
32   chr4    3871307        5392736     NM_177998         OTOP1
33   chr4    3871307        5392736     NR_037888     STX18-AS1
34   chr4    3871307        5392736     NR_125765     LINC01396
35   chr4    3871307        5392736     NR_125892  LOC101928279
36   chr4    3871307        5392736     NR_125893  LOC101928306
37   chr4    3871307        5392736     NR_126434     STX18-IT1
38   chr4    3871307        5392736     NR_130741       FAM86EP
39   chr5      87309         250030  NM_001080478       LRRC14B
40   chr5      87309         250030     NM_004168          SDHA
41   chr5      87309         250030     NM_052909      PLEKHG4B
42   chr5      87309         250030     NM_145265       CCDC127
43   chr6  162651139      162805149     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21836831       21965909  NM_001163380     RAB2B
1   chr14   21836831       21965909  NM_001170629      CHD8
2   chr14   21836831       21965909  NM_001303523      TOX4
3   chr14   21836831       21965909     NM_007192   SUPT16H
6   chr14   21836831       21965909     NR_002916    SNORD8
7   chr14   21836831       21965909     NR_003029    SNORD9
8   chr14   45505184       45675222  NM_001308120   FAM179B
9   chr14   45505184       45675222  NM_001308133     FANCM
11  chr14   45505184       45675222     NM_002013     FKBP3
12  chr14   45505184       45675222     NM_017922    PRPF39
13  chr14   45505184       45675222     NM_018353  MIS18BP1
14  chr14   45505184       45675222     NR_003691  SNORD127,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  102703595      102839997     NM_002422          MMP3
1   chr11  102703595      102839997     NM_002426         MMP12
2   chr11  102703595      102839997     NM_002427         MMP13
3   chr11  102703595      102839997     NR_038390        WTAPP1
4   chr14   21791125       21985364  NM_001163380         RAB2B
5   chr14   21791125       21985364  NM_001170629          CHD8
6   chr14   21791125       21985364  NM_001303523          TOX4
7   chr14   21791125       21985364     NM_007192       SUPT16H
8   chr14   21791125       21985364     NM_019852        METTL3
9   chr14   21791125       21985364     NM_020366       RPGRIP1
12  chr14   21791125       21985364     NR_002916        SNORD8
13  chr14   21791125       21985364     NR_003029        SNORD9
14  chr14   79576010       80362278  NM_001272020         NRXN3
17  chr14   79576010       80362278     NR_135159  LOC105370586
18  chr15   77863669       78198842  NM_001301186        LINGO1
28  chr15   77863669       78198842     NR_045123    LINGO1-AS1
29  chr15   77863669       78198842     NR_120361    LINGO1-AS2
30  chr16   15436838       15716713  NM_001128423        MPV17L
31  chr16   15436838       15716713  NM_001142469      C16orf45
32  chr16   15436838       15716713  NM_001184998      KIAA0430
33  chr16   15436838       15716713  NM_001277325        NPIPA5
35  chr16   15436838       15716713     NR_106761       MIR6506
36  chr19   33117398       33237884  NM_001105570        NUDT19
37  chr19   33117398       33237884  NM_001110822        TDRD12
38  chr19   33117398       33237884     NM_032139       ANKRD27
39  chr19   33117398       33237884     NM_207391        RGS9BP
40   chr2   31408210       31535436  NM_001145122        CAPN14
42   chr2   31408210       31535436     NM_014600          EHD3
43   chr3     691759         796349     NR_110118     LINC01266
44   chr7  110729357      110865302  NM_001099658         LRRN3
45   chr7  110729357      110865302  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145281762      145442132  NM_001277444         NBPF9
1    chr1  145281762      145442132  NM_001278267        NBPF20
2    chr1  145281762      145442132  NM_001302371        NBPF10
3    chr1  145281762      145442132  NM_001313972         TXNIP
5    chr1  145281762      145442132     NM_145277          HFE2
6    chr1  145281762      145442132     NM_203458      NOTCH2NL
7    chr1  145281762      145442132     NR_104217       NBPF25P
8    chr1  145281762      145442132     NR_125967  LOC101928979
9   chr14   21805691       22005999  NM_001163380         RAB2B
10  chr14   21805691       22005999  NM_001170629          CHD8
11  chr14   21805691       22005999  NM_001303523          TOX4
12  chr14   21805691       22005999     NM_007192       SUPT16H
13  chr14   21805691       22005999     NM_019852        METTL3
14  chr14   21805691       22005999     NM_020366       RPGRIP1
17  chr14   21805691       22005999     NR_002916        SNORD8
18  chr14   21805691       22005999     NR_003029        SNORD9
19  chr14   21805691       22005999     NR_111966         SALL2
21  chr15   28667926       28781838     NR_033351       GOLGA8F
22  chr15   28667926       28781838     NR_033353       GOLGA8G
23  chr15   28667926       28781838     NR_039734     MIR4509-3
25   chr2   97217082       97323537  NM_001115016        KANSL3
26   chr2   97217082       97323537  NM_001293083        FER1L5
27   chr2   97217082       97323537  NM_001319085        ARID5A
30   chr3    7066786        7208421     NM_181874          GRM7,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  108391548      108541129     NM_006113          VAV3
1   chr1  108391548      108541129     NR_046653      VAV3-AS1
2   chr1  108391548      108541129     NR_107006       MIR7852
3  chr16   18092214       18489434  NM_001282511        NPIPA8
4  chr16   18092214       18489434     NR_103772  LOC100288162
5  chr16   18092214       18489434     NR_106971     MIR6511A4
6  chr16   18092214       18489434     NR_107060     MIR6770-2
7  chr19   20299760       20403309     NM_052852        ZNF486
8   chr7  110603126      110728690  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82163535       83766453  NM_001297704        ADGRL2
2    chr1   82163535       83766453     NR_110632     LINC01361
4    chr1  145275088      147937293  NM_001012758        NUDT17
5    chr1  145275088      147937293  NM_001039888      ANKRD34A
6    chr1  145275088      147937293  NM_001097612        GPR89A
7    chr1  145275088      147937293  NM_001101663        NBPF11
9    chr1  145275088      147937293  NM_001144829          FMO5
10   chr1  145275088      147937293  NM_001184795        PEX11B
11   chr1  145275088      147937293  NM_001201325         PDZK1
12   chr1  145275088      147937293  NM_001256336         CHD1L
13   chr1  145275088      147937293  NM_001277444         NBPF9
14   chr1  145275088      147937293  NM_001278141        NBPF12
15   chr1  145275088      147937293  NM_001278267        NBPF20
16   chr1  145275088      147937293  NM_001280799       ANKRD35
17   chr1  145275088      147937293  NM_001302371        NBPF10
18   chr1  145275088      147937293  NM_001303040        ITGA10
19   chr1  145275088      147937293  NM_001303456        POLR3C
20   chr1  145275088      147937293  NM_001313972         TXNIP
23   chr1  145275088      147937293     NM_004326          BCL9
24   chr1  145275088      147937293     NM_005105         RBM8A
25   chr1  145275088      147937293     NM_005266          GJA5
26   chr1  145275088      147937293     NM_005267          GJA8
27   chr1  145275088      147937293     NM_005399        PRKAB2
28   chr1  145275088      147937293     NM_006099         PIAS3
31   chr1  145275088      147937293     NM_007053         CD160
32   chr1  145275088      147937293     NM_014455        RNF115
33   chr1  145275088      147937293     NM_016334        GPR89B
34   chr1  145275088      147937293     NM_016361          ACP6
35   chr1  145275088      147937293     NM_032305       POLR3GL
36   chr1  145275088      147937293     NM_145277          HFE2
37   chr1  145275088      147937293     NM_153713         LIX1L
39   chr1  145275088      147937293     NM_203458      NOTCH2NL
40   chr1  145275088      147937293     NR_002305       PDIA3P1
41   chr1  145275088      147937293     NR_002328        GNRHR2
42   chr1  145275088      147937293     NR_024442     LOC728989
43   chr1  145275088      147937293     NR_038423     LINC00624
44   chr1  145275088      147937293     NR_049810       MIR5087
46   chr1  145275088      147937293     NR_102405         NBPF8
47   chr1  145275088      147937293     NR_103466       NBPF13P
50   chr1  145275088      147937293     NR_104217       NBPF25P
52   chr1  145275088      147937293     NR_106794       MIR6736
53   chr1  145275088      147937293     NR_106967       MIR6077
56   chr1  145275088      147937293     NR_111930  LOC100132057
57   chr1  145275088      147937293     NR_111936       PDZK1P1
59   chr1  145275088      147937293     NR_120331  LOC101927468
60   chr1  145275088      147937293     NR_121645       RNVU1-8
61   chr1  145275088      147937293     NR_125967  LOC101928979
62   chr1  145275088      147937293     NR_135559  LOC100505824
65  chr16   29511399       29632700     NR_049833     MIR3680-2
66  chr16   29511399       29632700     NR_135305        SMG1P2
68  chr16   88428334       88539764  NM_001127464        ZNF469
69  chr16   88428334       88539764     NM_153813         ZFPM1
70  chr16   88428334       88539764     NR_049821       MIR5189
71   chr7   94292579       94446695  NM_001184962         PEG10,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   15041568       15295808  NM_001270767          NTAN1
1   chr16   15041568       15295808  NM_001285445         PDXDC1
6   chr16   15041568       15295808  NM_001301064           RRN3
8   chr16   15041568       15295808     NM_006985         NPIPA1
9   chr16   15041568       15295808     NR_037466      MIR3180-4
10  chr16   15041568       15295808     NR_106775      MIR6511B1
11  chr16   15041568       15295808     NR_106965      MIR6511B2
12  chr16   15041568       15295808     NR_123721  PKD1P6-NPIPP1
14  chr16   15041568       15295808     NR_125434   LOC100505915
15  chr16   18406747       18621837  NM_001004060          NOMO2
16  chr16   18406747       18621837  NM_001282511         NPIPA8
17  chr16   18406747       18621837     NR_003569        ABCC6P1
18  chr16   18406747       18621837     NR_036140      MIR3179-1
19  chr16   18406747       18621837     NR_036142      MIR3180-2
20  chr16   18406747       18621837     NR_036144      MIR3180-3
21  chr16   18406747       18621837     NR_037442      MIR3670-1
22  chr16   18406747       18621837     NR_103772   LOC100288162
23  chr16   18406747       18621837     NR_106971      MIR6511A4
24  chr16   18406747       18621837     NR_107060      MIR6770-2
25   chr7  157320630      158187515  NM_001308267         PTPRN2
27   chr7  157320630      158187515     NR_029689       MIR153-2
28   chr7  157320630      158187515     NR_038966   LOC100506585,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   86730547       88309546     NM_000842          GRM5
2   chr11   86730547       88309546  NM_001168724       TMEM135
3   chr11   86730547       88309546     NM_001814          CTSC
4   chr11   86730547       88309546     NM_022337         RAB38
6   chr11   86730547       88309546     NR_036124       MIR3166
7   chr11   86730547       88309546     NR_049724      GRM5-AS1
8   chr11   86730547       88309546     NR_135090  LOC105369423
9   chr14   21899620       22420181  NM_001001912         OR4E2
10  chr14   21899620       22420181  NM_001005465        OR10G3
11  chr14   21899620       22420181  NM_001005466        OR10G2
12  chr14   21899620       22420181  NM_001163380         RAB2B
13  chr14   21899620       22420181  NM_001170629          CHD8
14  chr14   21899620       22420181  NM_001303523          TOX4
15  chr14   21899620       22420181  NM_001317107         OR4E1
16  chr14   21899620       22420181     NM_019852        METTL3
19  chr14   21899620       22420181     NR_111966         SALL2
21   chr4  169266127      169386416  NM_001012967        DDX60L
23   chr4  189168729      189661937     NR_033869     LINC01060
24   chr7    2687907        2892913  NM_001282440         GNA12
26   chr7    2687907        2892913  NM_001284355          AMZ1
29   chr7    2687907        2892913     NM_025250         TTYH3
31   chr7   75380044       75491414     NM_002991         CCL24
32   chr7   75380044       75491414     NM_006072         CCL26,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr22   17263756       17446302  NM_001037814      GAB4
1  chr22   17263756       17446302     NM_175878      XKR3
2  chr22   17263756       17446302     NR_003607   HSFY1P1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   81770126       81882954     NR_120571  MIR4300HG
1   chr14   55676633       56007273     NM_014924      ATG14
2   chr14   55676633       56007273     NM_017943     FBXO34
4   chr14   55676633       56007273     NM_199047      TBPL2
5   chr16   29488473       29602551     NR_135305     SMG1P2
7   chr21   22335537       22568911     NM_004540      NCAM2
8    chr7  110730032      111802291  NM_001099658      LRRN3
9    chr7  110730032      111802291  NM_001244606     IMMP2L
10   chr7  110730032      111802291     NM_014705      DOCK4
12   chr7  110730032      111802291     NR_103806  DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr13   40345871       40451490  NM_001145079         COG6
1   chr14   21866895       22263867  NM_001001912        OR4E2
2   chr14   21866895       22263867  NM_001005465       OR10G3
3   chr14   21866895       22263867  NM_001005466       OR10G2
4   chr14   21866895       22263867  NM_001163380        RAB2B
5   chr14   21866895       22263867  NM_001170629         CHD8
6   chr14   21866895       22263867  NM_001303523         TOX4
7   chr14   21866895       22263867  NM_001317107        OR4E1
8   chr14   21866895       22263867     NM_019852       METTL3
11  chr14   21866895       22263867     NR_111966        SALL2
13  chr17   56178435       56427430     NM_000250          MPO
14  chr17   56178435       56427430     NM_000502          EPX
15  chr17   56178435       56427430  NM_001004707        OR4D2
16  chr17   56178435       56427430  NM_001165927         MKS1
18  chr17   56178435       56427430     NM_003168      SUPT4H1
19  chr17   56178435       56427430     NM_004758      TSPOAP1
20  chr17   56178435       56427430     NM_012374        OR4D1
21  chr17   56178435       56427430     NR_002307       MSX2P1
22  chr17   56178435       56427430     NR_027647          LPO
23  chr17   56178435       56427430     NR_029683       MIR142
24  chr17   56178435       56427430     NR_038410  TSPOAP1-AS1
28  chr17   56178435       56427430     NR_039889      MIR4736
29   chr2   31441500       31560988     NM_000379          XDH
30   chr2   31441500       31560988  NM_001321270       CAPN14
31   chr2   31441500       31560988     NM_014600         EHD3
32   chr9   28199258       28487154  NM_001258282       LINGO2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21699954       21934345  NM_001163380     RAB2B
1  chr14   21699954       21934345  NM_001170629      CHD8
2  chr14   21699954       21934345     NM_007192   SUPT16H
3  chr14   21699954       21934345     NM_020366   RPGRIP1
5  chr14   21699954       21934345     NM_031314    HNRNPC
7  chr14   21699954       21934345     NR_002916    SNORD8
8  chr14   21699954       21934345     NR_003029    SNORD9
9   chr5   20442718       20549475  NM_001291956     CDH18,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  187147524      187386089     NR_126347   LINC01036
1   chr14   21750404       21942936  NM_001163380       RAB2B
2   chr14   21750404       21942936  NM_001170629        CHD8
3   chr14   21750404       21942936     NM_007192     SUPT16H
4   chr14   21750404       21942936     NM_020366     RPGRIP1
7   chr14   21750404       21942936     NR_002916      SNORD8
8   chr14   21750404       21942936     NR_003029      SNORD9
9   chr15   99886028      100089435  NM_001284400      LRRC28
11   chr2   69592430       69705178  NM_001244710       GFPT1
12   chr2   69592430       69705178     NM_014911        AAK1
13   chr2   69592430       69705178     NM_015700        NFU1
14   chr6  161927692      162092580     NM_013988       PARK2
15   chr8     212048         773350  NM_001256113        TDRP
16   chr8     212048         773350  NM_001303100      ERICH1
17   chr8     212048         773350  NM_001346810      DLGAP2
18   chr8     212048         773350     NM_012173      FBXO25
21   chr8     212048         773350     NR_073397  ERICH1-AS1
22   chr8     212048         773350     NR_103537      FAM87A
23   chr8     212048         773350     NR_134292   LOC401442,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87668231       87847579  NM_001290053  LOC101927844
1    chr1   87668231       87847579     NM_006769          LMO4
2    chr1   87668231       87847579     NR_038324     LINC01364
3   chr14   21721742       21825406     NM_007192       SUPT16H
4   chr14   21721742       21825406     NM_020366       RPGRIP1
5   chr14   21721742       21825406     NM_031314        HNRNPC
6   chr18   67822749       67939609  NM_001318520          RTTN
7    chr3     385411         542729  NM_001253387          CHL1
9    chr3     385411         542729     NR_110739      CHL1-AS1
10   chr7   19727141       19831592  NM_001002926       TWISTNB
11   chr7   19727141       19831592     NM_152774       TMEM196
12   chr7   19727141       19831592     NR_036101       MIR3146,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   14972489       15220152  NM_001270767          NTAN1
1   chr16   14972489       15220152  NM_001285445         PDXDC1
6   chr16   14972489       15220152  NM_001301064           RRN3
8   chr16   14972489       15220152     NM_006985         NPIPA1
9   chr16   14972489       15220152     NM_014287          NOMO1
10  chr16   14972489       15220152     NR_036140      MIR3179-1
11  chr16   14972489       15220152     NR_036141      MIR3180-1
12  chr16   14972489       15220152     NR_036142      MIR3180-2
13  chr16   14972489       15220152     NR_103772   LOC100288162
14  chr16   14972489       15220152     NR_106970      MIR6511A3
15  chr16   14972489       15220152     NR_107060      MIR6770-2
16  chr16   14972489       15220152     NR_123721  PKD1P6-NPIPP1
18  chr16   14972489       15220152     NR_125434   LOC100505915
19  chr16   14972489       15220152     NR_128713      MIR3670-4
20  chr16   15137356       15248225  NM_001270767          NTAN1
21  chr16   15137356       15248225  NM_001285449         PDXDC1
22  chr16   15137356       15248225  NM_001301064           RRN3
24  chr16   15137356       15248225     NR_106775      MIR6511B1
25  chr16   15137356       15248225     NR_106965      MIR6511B2
26  chr16   15137356       15248225     NR_123721  PKD1P6-NPIPP1
28  chr16   15137356       15248225     NR_125434   LOC100505915
29  chr18   56086988       56664889  NM_001289967   LOC101927322
30  chr18   56086988       56664889  NM_001318727         ZNF532
32  chr18   56086988       56664889     NM_006785          MALT1
34  chr18   56086988       56664889     NM_052947          ALPK2
35  chr18   56086988       56664889     NR_029667         MIR122
36  chr18   56086988       56664889     NR_039899        MIR3591
37  chr18   56086988       56664889     NR_132963       SNORA108
38  chr22   19887718       20024227     NM_000754           COMT
41  chr22   19887718       20024227  NM_001282512         TXNRD2
42  chr22   19887718       20024227  NM_001283116         TANGO2
45  chr22   19887718       20024227     NM_001670          ARVCF
48  chr22   19887718       20024227     NR_029706         MIR185
49  chr22   19887718       20024227     NR_039918        MIR4761
50   chr6  129279043      129772251  NM_001079823          LAMA2
51   chr6  161706415      162216965     NM_013988          PARK2
52   chr6  161706415      162216965     NR_134594   LOC105378098
53   chr7   75828099       75956768  NM_001110199          SRRM3
54   chr7   75828099       75956768     NM_001540          HSPB1
55   chr7   75828099       75956768     NM_012479          YWHAG
56   chr9   39120647       39286378     NM_033655        CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28796724       29955165  NM_001130414         APBA2
1   chr15   28796724       29955165  NM_001282468       GOLGA8M
2   chr15   28796724       29955165     NM_015307      FAM189A1
3   chr15   28796724       29955165     NM_138704        NSMCE3
4   chr15   28796724       29955165     NR_026589       WHAMMP2
5   chr15   28796724       29955165     NR_036443       HERC2P9
6   chr15   28796724       29955165     NR_036475  LOC100289656
7   chr15   28796724       29955165     NR_037599     PDCD6IPP2
8   chr15   28796724       29955165     NR_047567     GOLGA6L7P
9   chr16    6694039        6873536  NM_001142334        RBFOX1
12  chr19   33113968       33410290  NM_001105570        NUDT19
13  chr19   33113968       33410290  NM_001110822        TDRD12
14  chr19   33113968       33410290     NM_014270        SLC7A9
15  chr19   33113968       33410290     NM_032139       ANKRD27
16  chr19   33113968       33410290     NM_032816         CEP89
17  chr19   33113968       33410290     NM_207391        RGS9BP
18   chr4     527403         664427     NM_000283         PDE6B
20   chr4     527403         664427     NR_110293          PIGG,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12    1008345        1120362  NM_001297419     RAD52
4  chr12    1008345        1120362     NM_018979      WNK1
5  chr12    1008345        1120362     NR_027949      ERC1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48258557       48447219  NM_001004702      OR4C3
1   chr11   48258557       48447219  NM_001004725      OR4S1
2   chr11   48258557       48447219  NM_001004726      OR4X1
3   chr11   48258557       48447219  NM_001004727      OR4X2
4   chr11   48258557       48447219  NM_001005513     OR4C45
5   chr11   48323892       48492229  NM_001004702      OR4C3
6   chr11   48323892       48492229  NM_001004725      OR4S1
7   chr11   48323892       48492229  NM_001005513     OR4C45
8   chr14   21761251       21930349  NM_001163380      RAB2B
9   chr14   21761251       21930349  NM_001170629       CHD8
10  chr14   21761251       21930349     NM_007192    SUPT16H
11  chr14   21761251       21930349     NM_020366    RPGRIP1
14  chr14   21761251       21930349     NR_002916     SNORD8
15  chr14   21761251       21930349     NR_003029     SNORD9
16  chr16   68584335       68871312  NM_001305204      ZFP90
18  chr16   68584335       68871312  NM_001317184       CDH1
19  chr16   68584335       68871312  NM_001317195       CDH3
20  chr16   68584335       68871312     NR_106988  MIR7641-2
21  chr16   71082022       71262992  NM_001198542      HYDIN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21810522       22153756  NM_001001912         OR4E2
1   chr14   21810522       22153756  NM_001005465        OR10G3
2   chr14   21810522       22153756  NM_001005466        OR10G2
3   chr14   21810522       22153756  NM_001163380         RAB2B
4   chr14   21810522       22153756  NM_001170629          CHD8
5   chr14   21810522       22153756  NM_001303523          TOX4
6   chr14   21810522       22153756  NM_001317107         OR4E1
7   chr14   21810522       22153756     NM_007192       SUPT16H
8   chr14   21810522       22153756     NM_019852        METTL3
9   chr14   21810522       22153756     NM_020366       RPGRIP1
12  chr14   21810522       22153756     NR_002916        SNORD8
13  chr14   21810522       22153756     NR_003029        SNORD9
14  chr14   21810522       22153756     NR_111966         SALL2
16  chr15   30228629       31387070  NM_001039841     ARHGAP11B
17  chr15   30228629       31387070  NM_001146094          FAN1
19  chr15   30228629       31387070  NM_001252020         TRPM1
22  chr15   30228629       31387070  NM_001282472       GOLGA8J
23  chr15   30228629       31387070  NM_001282484       GOLGA8R
24  chr15   30228629       31387070  NM_001282490       GOLGA8H
25  chr15   30228629       31387070  NM_001301025          TJP1
27  chr15   30228629       31387070     NM_017762        MTMR10
28  chr15   30228629       31387070     NM_139320      CHRFAM7A
29  chr15   30228629       31387070     NR_026771  DKFZP434L187
30  chr15   30228629       31387070     NR_026858        ULK4P1
31  chr15   30228629       31387070     NR_026859        ULK4P3
32  chr15   30228629       31387070     NR_029624        MIR211
33  chr15   30228629       31387070     NR_033933       GOLGA8T
34  chr15   30228629       31387070     NR_038253  LOC100288637
36  chr15   30228629       31387070     NR_072991      HERC2P10
37   chr2  110131458      110258833  NM_001099289        SH3RF3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   21278570       21569640  NM_001288713         NELL1
1   chr11   48356612       48501504  NM_001005513        OR4C45
2   chr11  134195694      134547475     NM_054025        B3GAT1
3   chr11  134195694      134547475     NM_138342        GLB1L2
4   chr11  134195694      134547475     NR_033852     LOC283177
5   chr14   21770093       22928534  NM_001001912         OR4E2
6   chr14   21770093       22928534  NM_001005465        OR10G3
7   chr14   21770093       22928534  NM_001005466        OR10G2
8   chr14   21770093       22928534  NM_001163380         RAB2B
9   chr14   21770093       22928534  NM_001170629          CHD8
10  chr14   21770093       22928534  NM_001303523          TOX4
11  chr14   21770093       22928534  NM_001317107         OR4E1
12  chr14   21770093       22928534     NM_007192       SUPT16H
13  chr14   21770093       22928534     NM_019852        METTL3
14  chr14   21770093       22928534     NM_020366       RPGRIP1
17  chr14   21770093       22928534     NR_002916        SNORD8
18  chr14   21770093       22928534     NR_003029        SNORD9
19  chr14   21770093       22928534     NR_111966         SALL2
21  chr14   37597708       37703137  NM_001171170      SLC25A21
22  chr14   37597708       37703137  NM_001195296        MIPOL1
23  chr14   37597708       37703137     NR_033240  SLC25A21-AS1
24  chr14   37947182       38403391  NM_001195296        MIPOL1
25  chr14   37947182       38403391  NM_001310135          TTC6
26  chr14   37947182       38403391     NM_004496         FOXA1
27  chr14   37947182       38403391     NR_135286     LINC00517
28  chr15   28816204       28943408     NR_036443       HERC2P9
29   chr2  195573858      195840849     NR_110223  LOC101927431
30   chr4   94172316       94317023     NM_001510         GRID2
31   chr8  135657922      135761358  NM_001174158          ZFAT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  171330349      171735445     NM_000261          MYOC
1    chr1  171330349      171735445     NM_003762         VAMP4
2    chr1  171330349      171735445     NM_015172        PRRC2C
3    chr1  171352444      171495963     NM_015172        PRRC2C
4   chr14   81635771       81851904  NM_001256430         STON2
5   chr14   81635771       81851904  NM_001278940        GTF2A1
8   chr14   81635771       81851904     NR_003021       SNORA79
9   chr14   81635771       81851904     NR_135252  LOC101928504
10  chr22   18969719       19173106  NM_001184781         DGCR2
11  chr22   18969719       19173106  NM_001256534       SLC25A1
12  chr22   18969719       19173106     NM_001835        CLTCL1
13  chr22   18969719       19173106     NM_005315          GSC2
15  chr22   18969719       19173106     NM_022719        DGCR14
16  chr22   18969719       19173106     NM_053006         TSSK2
17  chr22   18969719       19173106     NR_002733         DGCR5
18  chr22   18969719       19173106     NR_024157        DGCR11
19  chr22   18969719       19173106     NR_024159         DGCR9
20  chr22   18969719       19173106     NR_026651        DGCR10
21  chr22   18969719       19173106     NR_103767     LINC01311
23   chr3     311487         452278  NM_001253387          CHL1
25   chr3     311487         452278     NR_110739      CHL1-AS1
26   chr4   93964844       94211290     NM_001510         GRID2
27   chr8     132589         245203  NM_001042415        ZNF596
32   chr8     132589         245203     NR_003572     RPL23AP53,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21720188       22154472  NM_001001912      OR4E2
1   chr14   21720188       22154472  NM_001005465     OR10G3
2   chr14   21720188       22154472  NM_001005466     OR10G2
3   chr14   21720188       22154472  NM_001163380      RAB2B
4   chr14   21720188       22154472  NM_001170629       CHD8
5   chr14   21720188       22154472  NM_001303523       TOX4
6   chr14   21720188       22154472  NM_001317107      OR4E1
7   chr14   21720188       22154472     NM_007192    SUPT16H
8   chr14   21720188       22154472     NM_019852     METTL3
9   chr14   21720188       22154472     NM_020366    RPGRIP1
11  chr14   21720188       22154472     NM_031314     HNRNPC
13  chr14   21720188       22154472     NR_002916     SNORD8
14  chr14   21720188       22154472     NR_003029     SNORD9
15  chr14   21720188       22154472     NR_111966      SALL2
17  chr14   21754125       21950180  NM_001163380      RAB2B
18  chr14   21754125       21950180  NM_001170629       CHD8
19  chr14   21754125       21950180  NM_001303523       TOX4
20  chr14   21754125       21950180     NM_007192    SUPT16H
21  chr14   21754125       21950180     NM_020366    RPGRIP1
24  chr14   21754125       21950180     NR_002916     SNORD8
25  chr14   21754125       21950180     NR_003029     SNORD9
26  chr14   21891157       22557357  NM_001001912      OR4E2
27  chr14   21891157       22557357  NM_001005465     OR10G3
28  chr14   21891157       22557357  NM_001005466     OR10G2
29  chr14   21891157       22557357  NM_001163380      RAB2B
30  chr14   21891157       22557357  NM_001170629       CHD8
31  chr14   21891157       22557357  NM_001303523       TOX4
32  chr14   21891157       22557357  NM_001317107      OR4E1
33  chr14   21891157       22557357     NM_019852     METTL3
36  chr14   21891157       22557357     NR_111966      SALL2
38  chr15   21072918       21240897     NR_028506      NF1P2
39  chr15   21072918       21240897     NR_040094  LINC01193
40  chr15   21072918       21240897     NR_049895  MIR5701-2
41   chr2   56589935       56798859  NM_001080433    CCDC85A
42   chr3     728220         891729     NR_110118  LINC01266
43   chr3  155544391      155646972  NM_001190992    SLC33A1
44   chr3  155544391      155646972     NM_003875       GMPS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21931419       22566141  NM_001001912         OR4E2
1   chr14   21931419       22566141  NM_001005465        OR10G3
2   chr14   21931419       22566141  NM_001005466        OR10G2
3   chr14   21931419       22566141  NM_001163380         RAB2B
4   chr14   21931419       22566141  NM_001303523          TOX4
5   chr14   21931419       22566141  NM_001317107         OR4E1
6   chr14   21931419       22566141     NM_019852        METTL3
8   chr14   21931419       22566141     NR_111966         SALL2
10   chr4  145137879      145646541     NM_022475          HHIP
11   chr4  145137879      145646541     NR_037595      HHIP-AS1
12   chr9   67198965       67349320     NR_002817        AQP7P1
13   chr9   67198965       67349320     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143997054      145390363  NM_001002810       PDE4DIP
3    chr1  143997054      145390363  NM_001135789       PPIAL4C
8    chr1  143997054      145390363  NM_001277444         NBPF9
9    chr1  143997054      145390363  NM_001278267        NBPF20
10   chr1  143997054      145390363  NM_001302371        NBPF10
11   chr1  143997054      145390363     NM_004892        SEC22B
13   chr1  143997054      145390363     NM_203458      NOTCH2NL
14   chr1  143997054      145390363     NR_003242        PFN1P2
15   chr1  143997054      145390363     NR_024511     LINC00623
17   chr1  143997054      145390363     NR_102405         NBPF8
18   chr1  143997054      145390363     NR_104217       NBPF25P
19   chr1  143997054      145390363     NR_111953     LINC00869
20   chr1  143997054      145390363     NR_125967  LOC101928979
21  chr14   55657158       55765051     NM_014750        DLGAP5
22  chr14   55657158       55765051     NM_017943        FBXO34
24   chr6  162577572      162765752     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21829745       23368106  NM_001001912         OR4E2
1   chr14   21829745       23368106  NM_001005465        OR10G3
2   chr14   21829745       23368106  NM_001005466        OR10G2
3   chr14   21829745       23368106  NM_001126105        SLC7A7
5   chr14   21829745       23368106  NM_001163380         RAB2B
6   chr14   21829745       23368106  NM_001170629          CHD8
7   chr14   21829745       23368106  NM_001303523          TOX4
8   chr14   21829745       23368106  NM_001317107         OR4E1
9   chr14   21829745       23368106  NM_001318870        MRPL52
10  chr14   21829745       23368106  NM_001329226         LRP10
11  chr14   21829745       23368106     NM_001344          DAD1
12  chr14   21829745       23368106     NM_004995         MMP14
13  chr14   21829745       23368106     NM_005015         OXA1L
14  chr14   21829745       23368106     NM_007192       SUPT16H
15  chr14   21829745       23368106     NM_019852        METTL3
17  chr14   21829745       23368106     NM_022060         ABHD4
19  chr14   21829745       23368106     NM_173527          REM2
20  chr14   21829745       23368106     NR_002916        SNORD8
21  chr14   21829745       23368106     NR_003029        SNORD9
23  chr14   21829745       23368106     NR_111966         SALL2
25  chr15  100137430      100538628  NM_001130928         MEF2A
26  chr15  100137430      100538628  NM_001284417        LYSMD4
29  chr15  100137430      100538628     NM_139057      ADAMTS17
30  chr15  100137430      100538628     NR_003260       DNM1P46
31  chr15  100137430      100538628     NR_135737     LOC400464
32   chr2  153090277      153247595     NM_052905         FMNL2
33   chr2  195598333      195768371     NR_110223  LOC101927431,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   31489150       31635515     NM_032849      MEDAG
1   chr13   31489150       31635515     NM_152325      TEX26
2   chr13   31489150       31635515     NR_038287  TEX26-AS1
4   chr14   21829375       22242491  NM_001001912      OR4E2
5   chr14   21829375       22242491  NM_001005465     OR10G3
6   chr14   21829375       22242491  NM_001005466     OR10G2
7   chr14   21829375       22242491  NM_001163380      RAB2B
8   chr14   21829375       22242491  NM_001170629       CHD8
9   chr14   21829375       22242491  NM_001303523       TOX4
10  chr14   21829375       22242491  NM_001317107      OR4E1
11  chr14   21829375       22242491     NM_007192    SUPT16H
12  chr14   21829375       22242491     NM_019852     METTL3
15  chr14   21829375       22242491     NR_002916     SNORD8
16  chr14   21829375       22242491     NR_003029     SNORD9
17  chr14   21829375       22242491     NR_111966      SALL2
19   chr7   12213079       12428703  NM_001134232   TMEM106B
20   chr7   12213079       12428703  NM_001135924       VWDE,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr21   22353610       22874171     NM_004540      NCAM2
1   chr22   19011375       19204347  NM_001184781      DGCR2
2   chr22   19011375       19204347  NM_001256534    SLC25A1
3   chr22   19011375       19204347     NM_001835     CLTCL1
4   chr22   19011375       19204347     NM_005315       GSC2
6   chr22   19011375       19204347     NM_022719     DGCR14
7   chr22   19011375       19204347     NM_053006      TSSK2
8   chr22   19011375       19204347     NR_024157     DGCR11
9   chr22   19011375       19204347     NR_103767  LINC01311
10  chr22   19011375       19204347     NR_110533      DGCR5
11   chr5   26918521       27048238     NM_016279       CDH9
12   chr5  154195968      154393503  NM_001014990     MRPL22
13   chr5  154195968      154393503  NM_001099293      KIF4B
14   chr5  154195968      154393503  NM_001301074      CNOT8
17   chr5  154195968      154393503     NM_015315      LARP1
18   chr5  154195968      154393503     NM_015465     GEMIN5
19   chr5  154195968      154393503     NM_032385     FAXDC2
20   chr5  154195968      154393503     NR_039667    MIR378H
21   chr6  162841125      162964351     NM_013988      PARK2
22   chr9   38959732       39190511     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  128559854      128773254  NM_001136103      TMEM132C
1   chr12  128559854      128773254     NR_039720      MIR4419B
2   chr12  128559854      128773254     NR_104647  LOC100996679
3   chr12  128559854      128773254     NR_104648  LOC101927694
4   chr14   21755789       22184214  NM_001001912         OR4E2
5   chr14   21755789       22184214  NM_001005465        OR10G3
6   chr14   21755789       22184214  NM_001005466        OR10G2
7   chr14   21755789       22184214  NM_001163380         RAB2B
8   chr14   21755789       22184214  NM_001170629          CHD8
9   chr14   21755789       22184214  NM_001303523          TOX4
10  chr14   21755789       22184214  NM_001317107         OR4E1
11  chr14   21755789       22184214     NM_007192       SUPT16H
12  chr14   21755789       22184214     NM_019852        METTL3
13  chr14   21755789       22184214     NM_020366       RPGRIP1
16  chr14   21755789       22184214     NR_002916        SNORD8
17  chr14   21755789       22184214     NR_003029        SNORD9
18  chr14   21755789       22184214     NR_111966         SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28658441       29084321  NM_001282468       GOLGA8M
1   chr15   28658441       29084321     NR_026589       WHAMMP2
2   chr15   28658441       29084321     NR_033351       GOLGA8F
3   chr15   28658441       29084321     NR_033353       GOLGA8G
4   chr15   28658441       29084321     NR_036443       HERC2P9
5   chr15   28658441       29084321     NR_036475  LOC100289656
6   chr15   28658441       29084321     NR_037599     PDCD6IPP2
7   chr15   28658441       29084321     NR_039734     MIR4509-3
9    chr2   78223321       78491833     NR_110287  LOC101927948
10   chr2   78223321       78491833     NR_110288  LOC101927967
11   chr5   99686795       99985405     NM_198507       FAM174A
12   chr5   99686795       99985405     NR_027503  LOC100133050
13   chr9   72284321       72628957  NM_001010940      C9orf135
14   chr9   72284321       72628957  NM_001099666         PTAR1
15   chr9   72284321       72628957     NM_001163         APBA1
16   chr9   72284321       72628957     NR_038833  C9orf135-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102415175      102606605     NR_110211         OLFM3
1   chr10   81494329       81700318     NM_003019         SFTPD
2   chr10   81494329       81700318     NR_002724         MBL1P
3   chr10   81494329       81700318     NR_029407     LOC642361
4   chr10   81494329       81700318     NR_033857       BMS1P21
5   chr10   81494329       81700318     NR_120611    NUTM2B-AS1
8   chr11   48304312       48438930  NM_001004702         OR4C3
9   chr11   48304312       48438930  NM_001004725         OR4S1
10  chr11   48304312       48438930  NM_001005513        OR4C45
11  chr14   21848554       21985527  NM_001163380         RAB2B
12  chr14   21848554       21985527  NM_001170629          CHD8
13  chr14   21848554       21985527  NM_001303523          TOX4
14  chr14   21848554       21985527     NM_007192       SUPT16H
15  chr14   21848554       21985527     NM_019852        METTL3
18  chr14   21848554       21985527     NR_002916        SNORD8
19  chr14   21848554       21985527     NR_003029        SNORD9
20   chr9   95685601       95794181  NM_001083536          FGD3
23   chr9   95685601       95794181     NR_121565  LOC101927954,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    5115721        5715924  NM_001047160          NET1
1   chr10    5115721        5715924  NM_001253908        AKR1C3
3   chr10    5115721        5715924     NM_001818        AKR1C4
5   chr10    5115721        5715924     NM_005185        CALML3
6   chr10    5115721        5715924     NM_017422        CALML5
7   chr10    5115721        5715924     NM_024803        TUBAL3
8   chr10    5115721        5715924     NM_053049          UCN3
9   chr10    5115721        5715924     NR_027916       AKR1C8P
10  chr10    5115721        5715924     NR_037164         ASB13
12  chr10    5115721        5715924     NR_120496    CALML3-AS1
13  chr10    5115721        5715924     NR_134491  LOC105376382
14  chr14   21847005       22315143  NM_001001912         OR4E2
15  chr14   21847005       22315143  NM_001005465        OR10G3
16  chr14   21847005       22315143  NM_001005466        OR10G2
17  chr14   21847005       22315143  NM_001163380         RAB2B
18  chr14   21847005       22315143  NM_001170629          CHD8
19  chr14   21847005       22315143  NM_001303523          TOX4
20  chr14   21847005       22315143  NM_001317107         OR4E1
21  chr14   21847005       22315143     NM_007192       SUPT16H
22  chr14   21847005       22315143     NM_019852        METTL3
25  chr14   21847005       22315143     NR_002916        SNORD8
26  chr14   21847005       22315143     NR_003029        SNORD9
27  chr14   21847005       22315143     NR_111966         SALL2
29  chr15   41658754       41804275  NM_001243142        NUSAP1
30  chr15   41658754       41804275     NM_002220         ITPKA
31  chr15   41658754       41804275     NM_015138          RTF1
32  chr15   41658754       41804275     NM_206961           LTK
33  chr15   41658754       41804275     NR_045620       NDUFAF1
34  chr17   21816697       21934946     NR_027084      FLJ36000
35  chr17   21816697       21934946     NR_028336       FAM27E5
36   chr4  169269997      169555963  NM_001012967        DDX60L
37   chr4  169269997      169555963  NM_001166108         PALLD,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   67856433       68037874  NM_001127384        CTNNA3
2  chr15   28807488       29054151  NM_001282468       GOLGA8M
3  chr15   28807488       29054151     NR_026589       WHAMMP2
4  chr15   28807488       29054151     NR_036443       HERC2P9
5  chr15   28807488       29054151     NR_036475  LOC100289656
6  chr15   28807488       29054151     NR_037599     PDCD6IPP2
7   chr4   93758654       93947265     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16393230       16538552  NM_001282511        NPIPA8
1   chr16   16393230       16538552     NR_036140     MIR3179-1
2   chr16   16393230       16538552     NR_036141     MIR3180-1
3   chr16   16393230       16538552     NR_036142     MIR3180-2
4   chr16   16393230       16538552     NR_036447        PKD1P1
5   chr16   16393230       16538552     NR_103772  LOC100288162
6   chr16   16393230       16538552     NR_106766     MIR6511A1
7   chr16   16393230       16538552     NR_106971     MIR6511A4
8   chr16   16393230       16538552     NR_107060     MIR6770-2
9   chr16   16393230       16538552     NR_128713     MIR3670-4
10  chr22   17179852       17353465     NM_175878          XKR3
11  chr22   17179852       17353465     NR_003607       HSFY1P1
12  chr22   17179852       17353465     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  111159173      111662795  NM_001324128       XPNPEP1
2   chr15   28800366       29212964  NM_001282468       GOLGA8M
3   chr15   28800366       29212964     NR_026589       WHAMMP2
4   chr15   28800366       29212964     NR_036443       HERC2P9
5   chr15   28800366       29212964     NR_036475  LOC100289656
6   chr15   28800366       29212964     NR_037599     PDCD6IPP2
7   chr15   28800366       29212964     NR_047567     GOLGA6L7P
8    chr7    8695355        8851704     NM_152745         NXPH1
9    chr8    3659477        3795514     NM_033225         CSMD1
10   chr8  143422094      143546041  NM_001291931       TSNARE1
11   chr8  143422094      143546041     NM_001702        ADGRB1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr17   21443418       21554928  NM_001113434     C17orf51
1    chr2  131973883      132094816  NM_001083538        POTEE
2    chr2  131973883      132094816     NR_030728    LOC440910
3   chr20   14797440       15141491     NM_080676      MACROD2
4   chr20   14797440       15141491     NR_037841  MACROD2-AS1
6    chr5   24028620       24275066     NR_131245      C5orf17
7    chr9   12028046       13906962     NM_000550        TYRP1
8    chr9   12028046       13906962  NM_001261407         MPDZ
10   chr9   12028046       13906962     NM_203403      LURAP1L
11   chr9   12028046       13906962     NR_033863     FLJ41200
12   chr9   12028046       13906962     NR_125775  LURAP1L-AS1
13   chr9   12028046       13906962     NR_132976     SNORD137,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56522950       56788394  NM_001142770        PCDH15
3   chr14   41850454       42252800  NM_001346175         LRFN5
4   chr15   29724496       30235194  NM_001301025          TJP1
7   chr15   29724496       30235194     NM_015307      FAM189A1
8   chr15   29724496       30235194     NR_135221  LOC100130111
9   chr19   47790465       47971874  NM_001009813         MEIS3
10  chr19   47790465       47971874  NM_001271749         C5AR2
14  chr19   47790465       47971874     NM_001736         C5AR1
15  chr19   47790465       47971874     NM_014681         DHX34
16  chr19   47790465       47971874     NM_015063        SLC8A2
18  chr20   14667446       14842471     NM_080676       MACROD2
19   chr3  155997922      156413911  NM_001184717        TIPARP
21   chr3  155997922      156413911  NM_001308197          SSR3
24   chr3  155997922      156413911  NM_001308217        KCNAB1
30   chr3  155997922      156413911     NR_027954    TIPARP-AS1
31   chr3  155997922      156413911     NR_046618    KCNAB1-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21871331       21996670  NM_001163380      RAB2B
1   chr14   21871331       21996670  NM_001170629       CHD8
2   chr14   21871331       21996670  NM_001303523       TOX4
3   chr14   21871331       21996670     NM_019852     METTL3
6   chr14   21871331       21996670     NR_111966      SALL2
8   chr20    5171328        5284503     NM_003818       CDS2
9   chr20    5171328        5284503     NM_144773     PROKR2
10   chr4   91208899       91502800  NM_001145065     CCSER1
12   chr4  189430370      189560628     NR_033869  LINC01060,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   79015188       79303455     NM_006417     IFI44
1    chr1   79015188       79303455     NM_006820    IFI44L
3   chr14   21774064       21900982  NM_001170629      CHD8
4   chr14   21774064       21900982     NM_007192   SUPT16H
5   chr14   21774064       21900982     NM_020366   RPGRIP1
7   chr14   21774064       21900982     NR_002916    SNORD8
8   chr14   21774064       21900982     NR_003029    SNORD9
9   chr15  100096516      100211134  NM_001130928     MEF2A
11   chr5   24033770       24163429     NR_131245   C5orf17,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   68424111       68528491  NM_001127384    CTNNA3
2   chr14   21782080       21955249  NM_001163380     RAB2B
3   chr14   21782080       21955249  NM_001170629      CHD8
4   chr14   21782080       21955249  NM_001303523      TOX4
5   chr14   21782080       21955249     NM_007192   SUPT16H
6   chr14   21782080       21955249     NM_020366   RPGRIP1
9   chr14   21782080       21955249     NR_002916    SNORD8
10  chr14   21782080       21955249     NR_003029    SNORD9
11  chr15   20627485       20732075     NR_036432   HERC2P3
12  chr15   28196231       28337691     NM_000275      OCA2
14   chr3   60358548       60467631  NM_001320899      FHIT
15   chr4   71352515       71460781  NM_001286731      AMTN
16   chr4   71352515       71460781     NM_016519      AMBN
17   chr6  129230300      129573800  NM_001079823     LAMA2
18   chr9   38953758       39095218     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12767159       12898172  NM_001080830      PRAMEF12
1    chr1   12767159       12898172  NM_001103170       AADACL3
2    chr1   12767159       12898172  NM_001146344      PRAMEF11
3    chr1   12767159       12898172  NM_001294139       PRAMEF1
5    chr1   12767159       12898172     NM_152290      C1orf158
6   chr13   41305753       41495905     NM_005830        MRPS31
7   chr13   41305753       41495905     NM_014252      SLC25A15
8   chr13   41305753       41495905     NR_003365       SUGT1P3
9   chr13   41305753       41495905     NR_030352        MIR621
10  chr13   41305753       41495905     NR_038259       TPTE2P5
11  chr14   21751901       23348691  NM_001001912         OR4E2
12  chr14   21751901       23348691  NM_001005465        OR10G3
13  chr14   21751901       23348691  NM_001005466        OR10G2
14  chr14   21751901       23348691  NM_001126105        SLC7A7
16  chr14   21751901       23348691  NM_001163380         RAB2B
17  chr14   21751901       23348691  NM_001170629          CHD8
18  chr14   21751901       23348691  NM_001303523          TOX4
19  chr14   21751901       23348691  NM_001317107         OR4E1
20  chr14   21751901       23348691  NM_001318870        MRPL52
21  chr14   21751901       23348691  NM_001329226         LRP10
22  chr14   21751901       23348691     NM_001344          DAD1
23  chr14   21751901       23348691     NM_004995         MMP14
24  chr14   21751901       23348691     NM_005015         OXA1L
25  chr14   21751901       23348691     NM_007192       SUPT16H
26  chr14   21751901       23348691     NM_019852        METTL3
27  chr14   21751901       23348691     NM_020366       RPGRIP1
29  chr14   21751901       23348691     NM_022060         ABHD4
31  chr14   21751901       23348691     NR_002916        SNORD8
32  chr14   21751901       23348691     NR_003029        SNORD9
34  chr14   21751901       23348691     NR_111966         SALL2
36  chr18    8071719        8382923     NM_002845         PTPRM
37  chr18    8071719        8382923     NR_024419  LOC100192426
38  chr18   36515134       36974916     NR_024391      MIR924HG
39  chr19   21828398       21967296     NM_173531        ZNF100
40  chr19   21828398       21967296     NR_024523     LOC641367
41   chr2   97401328       97620944  NM_001122646       FAM178B
43   chr2   97401328       97620944  NM_001322354        LMAN2L
44   chr2   97401328       97620944     NM_016466       ANKRD39
46   chr2   97401328       97620944     NM_017623         CNNM3
47   chr2   97401328       97620944     NM_017789        SEMA4C
48   chr2   97401328       97620944     NM_020184         CNNM4
50   chr2   97401328       97620944     NM_144994       ANKRD23
51   chr2   97401328       97620944     NR_036074       MIR3127
52   chr2   97401328       97620944     NR_110209  LOC101927053
53   chr5  127801968      127928130     NM_001999          FBN2
54   chr9   44322631       44618803     NR_121564  LOC101927827
55   chr9   44322631       44618803     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  177037161      177173496  NM_001286164        ASTN1
2    chr1  177037161      177173496     NM_021165       BRINP2
4   chr10   67661943       67803056  NM_001127384       CTNNA3
6   chr13   80878995       81237154  NM_001318536        SPRY2
9   chr13   84044579       84466036     NM_052910      SLITRK1
10   chr2  242412024      242539756  NM_001164356        THAP4
11   chr2  242412024      242539756  NM_001271978        STK25
14   chr2  242412024      242539756     NM_014808        FARP2
16   chr2  242412024      242539756     NM_032515          BOK
17   chr2  242412024      242539756     NR_033346      BOK-AS1
18   chr2  242412024      242539756     NR_036083      MIR3133
19  chr20   14759268       15050415     NM_080676      MACROD2
20  chr20   14759268       15050415     NR_037841  MACROD2-AS1
22   chr6   79302758       79838750  NM_001010844     IRAK1BP1
23   chr6   79302758       79838750     NM_017934         PHIP
24   chr7   64153143       64280998  NM_001160183       ZNF138
25   chr7   64153143       64280998  NM_001282360       ZNF107,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  104184333      104302959  NM_001008218        AMY1B
3    chr1  104184333      104302959  NM_001008219        AMY1C
6    chr1  104184333      104302959  NM_001008221        AMY1A
12  chr10   56538938       56737105  NM_001142770       PCDH15
15  chr15   25804921       26044452     NM_024490       ATP10A
16  chr20   14846769       14991442     NM_080676      MACROD2
17  chr20   14846769       14991442     NR_037841  MACROD2-AS1
19   chr7    3269750        3383638     NM_152744         SDK1
20   chr7  152322315      152446701     NM_005431        XRCC2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143687402      143817061  NM_001123068       PPIAL4G
1    chr1  143687402      143817061     NR_104014     LINC01138
2    chr1  143687402      143817061     NR_111930  LOC100132057
3   chr16   18442077       18634455  NM_001004060         NOMO2
4   chr16   18442077       18634455     NR_003569       ABCC6P1
5   chr16   18442077       18634455     NR_036140     MIR3179-1
6   chr16   18442077       18634455     NR_036142     MIR3180-2
7   chr16   18442077       18634455     NR_036144     MIR3180-3
8   chr16   18442077       18634455     NR_037442     MIR3670-1
9   chr16   18442077       18634455     NR_107060     MIR6770-2
10   chr2   97253290       97361556  NM_001115016        KANSL3
11   chr2   97253290       97361556  NM_001293083        FER1L5
13   chr9   10001822       10106495     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   54201724       54354735     NR_120641    LINC01468
2    chr2   25478042       26151886  NM_001256304         DTNB
4    chr2   25478042       26151886  NM_001320892       DNMT3A
7    chr2   25478042       26151886     NM_002254        KIF3C
8    chr2   25478042       26151886     NM_018263        ASXL2
13   chr2   25478042       26151886     NR_031570      MIR1301
14  chr20   14655437       14810481     NM_080676      MACROD2
15  chr20   14693585       16069982  NM_001033087      MACROD2
17  chr20   14693585       16069982     NR_037841  MACROD2-AS1
19  chr20   14693585       16069982     NR_130924    LOC613266
21   chr4   71379754       71705413  NM_001037442        RUFY3
22   chr4   71379754       71705413  NM_001098477        GRSF1
24   chr4   71379754       71705413  NM_001286731         AMTN
29   chr4   71379754       71705413     NM_016519         AMBN
30   chr4   71379754       71705413     NM_020368         UTP3
31   chr4   71379754       71705413     NM_031889         ENAM
32   chr4   71379754       71705413     NM_144646       JCHAIN
33   chr7   18639994       18855618  NM_001204144        HDAC9,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  144709083      148236173  NM_001002810       PDE4DIP
3   chr1  144709083      148236173  NM_001012758        NUDT17
4   chr1  144709083      148236173  NM_001039888      ANKRD34A
5   chr1  144709083      148236173  NM_001097612        GPR89A
6   chr1  144709083      148236173  NM_001101663        NBPF11
8   chr1  144709083      148236173  NM_001135789       PPIAL4C
9   chr1  144709083      148236173  NM_001144829          FMO5
10  chr1  144709083      148236173  NM_001164261       PPIAL4D
11  chr1  144709083      148236173  NM_001184795        PEX11B
16  chr1  144709083      148236173  NM_001201325         PDZK1
17  chr1  144709083      148236173  NM_001256336         CHD1L
18  chr1  144709083      148236173  NM_001277444         NBPF9
19  chr1  144709083      148236173  NM_001278141        NBPF12
20  chr1  144709083      148236173  NM_001278267        NBPF20
21  chr1  144709083      148236173  NM_001280799       ANKRD35
22  chr1  144709083      148236173  NM_001302371        NBPF10
23  chr1  144709083      148236173  NM_001303040        ITGA10
24  chr1  144709083      148236173  NM_001303456        POLR3C
25  chr1  144709083      148236173  NM_001313972         TXNIP
28  chr1  144709083      148236173     NM_004326          BCL9
29  chr1  144709083      148236173     NM_004892        SEC22B
30  chr1  144709083      148236173     NM_005105         RBM8A
31  chr1  144709083      148236173     NM_005266          GJA5
32  chr1  144709083      148236173     NM_005267          GJA8
33  chr1  144709083      148236173     NM_005399        PRKAB2
34  chr1  144709083      148236173     NM_006099         PIAS3
37  chr1  144709083      148236173     NM_007053         CD160
38  chr1  144709083      148236173     NM_014455        RNF115
39  chr1  144709083      148236173     NM_016334        GPR89B
40  chr1  144709083      148236173     NM_016361          ACP6
42  chr1  144709083      148236173     NM_032305       POLR3GL
43  chr1  144709083      148236173     NM_145277          HFE2
44  chr1  144709083      148236173     NM_153713         LIX1L
46  chr1  144709083      148236173     NM_203458      NOTCH2NL
47  chr1  144709083      148236173     NR_002305       PDIA3P1
48  chr1  144709083      148236173     NR_002328        GNRHR2
49  chr1  144709083      148236173     NR_024442     LOC728989
50  chr1  144709083      148236173     NR_038423     LINC00624
51  chr1  144709083      148236173     NR_049810       MIR5087
53  chr1  144709083      148236173     NR_102405         NBPF8
55  chr1  144709083      148236173     NR_103466       NBPF13P
58  chr1  144709083      148236173     NR_104086      RNVU1-19
59  chr1  144709083      148236173     NR_104217       NBPF25P
61  chr1  144709083      148236173     NR_106794       MIR6736
62  chr1  144709083      148236173     NR_106967       MIR6077
65  chr1  144709083      148236173     NR_111930  LOC100132057
66  chr1  144709083      148236173     NR_111936       PDZK1P1
68  chr1  144709083      148236173     NR_120331  LOC101927468
69  chr1  144709083      148236173     NR_121645       RNVU1-8
70  chr1  144709083      148236173     NR_125967  LOC101928979
71  chr1  144709083      148236173     NR_135559  LOC100505824,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18302064       18557464  NM_001004060         NOMO2
1   chr16   18302064       18557464  NM_001282511        NPIPA8
2   chr16   18302064       18557464     NR_036140     MIR3179-1
3   chr16   18302064       18557464     NR_036142     MIR3180-2
4   chr16   18302064       18557464     NR_036144     MIR3180-3
5   chr16   18302064       18557464     NR_037442     MIR3670-1
6   chr16   18302064       18557464     NR_103772  LOC100288162
7   chr16   18302064       18557464     NR_106971     MIR6511A4
8   chr16   18302064       18557464     NR_107060     MIR6770-2
9   chr21   22633651       23235596     NM_004540         NCAM2
10  chr21   22633651       23235596     NR_038872     LINC00317
11  chr21   22633651       23235596     NR_109958     LINC01425
12   chr4     478860         596634  NM_001289053          PIGG
13   chr4     478860         596634     NM_133474        ZNF721,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    1489526        1621886     NM_018702        ADARB2
1   chr10    1489526        1621886     NR_033387    ADARB2-AS1
2   chr16   16292169       16579886  NM_001004067         NOMO3
3   chr16   16292169       16579886  NM_001079528         ABCC6
5   chr16   16292169       16579886  NM_001282511        NPIPA8
6   chr16   16292169       16579886     NR_036140     MIR3179-1
7   chr16   16292169       16579886     NR_036141     MIR3180-1
8   chr16   16292169       16579886     NR_036142     MIR3180-2
9   chr16   16292169       16579886     NR_036447        PKD1P1
10  chr16   16292169       16579886     NR_103772  LOC100288162
11  chr16   16292169       16579886     NR_106766     MIR6511A1
12  chr16   16292169       16579886     NR_106971     MIR6511A4
13  chr16   16292169       16579886     NR_107060     MIR6770-2
14  chr16   16292169       16579886     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143586769      144397050  NM_001123068       PPIAL4G
1    chr1  143586769      144397050  NM_001135789       PPIAL4C
2    chr1  143586769      144397050  NM_001278267        NBPF20
3    chr1  143586769      144397050  NM_001287385        FAM72C
4    chr1  143586769      144397050  NM_001345942        FAM72D
8    chr1  143586769      144397050     NR_024511     LINC00623
10   chr1  143586769      144397050     NR_104014     LINC01138
11   chr1  143586769      144397050     NR_106967       MIR6077
12   chr1  143586769      144397050     NR_111930  LOC100132057
13   chr1  143586769      144397050     NR_111953     LINC00869
15  chr15   77859879       78449918  NM_001101404         SH2D7
16  chr15   77859879       78449918  NM_001301186        LINGO1
25  chr15   77859879       78449918  NM_001301224          CIB2
26  chr15   77859879       78449918     NM_005530         IDH3A
27  chr15   77859879       78449918     NM_015079       TBC1D2B
29  chr15   77859879       78449918     NR_026998      LOC91450
30  chr15   77859879       78449918     NR_027024     LOC645752
31  chr15   77859879       78449918     NR_045123    LINGO1-AS1
32  chr15   77859879       78449918     NR_120361    LINGO1-AS2
33   chr8   87947510       88646220     NM_173538         CNBD1
34   chr9   41450631       41813957  NM_001113541     SPATA31A5
35   chr9   41450631       41813957     NM_015667     SPATA31A7
36   chr9   41450631       41813957     NR_003528       ZNF658B
37   chr9   41450631       41813957     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143113983      143431823     NR_110761  LOC102723769
1    chr1  176963095      177136984  NM_001286164         ASTN1
4    chr1  176963095      177136984     NR_030163        MIR488
5    chr1  244984370      245121757  NM_001312871         COX20
7    chr1  244984370      245121757     NM_004501        HNRNPU
9    chr1  244984370      245121757     NR_132782      SNORA100
10  chr14   21944306       22166021  NM_001001912         OR4E2
11  chr14   21944306       22166021  NM_001005465        OR10G3
12  chr14   21944306       22166021  NM_001005466        OR10G2
13  chr14   21944306       22166021  NM_001163380         RAB2B
14  chr14   21944306       22166021  NM_001303523          TOX4
15  chr14   21944306       22166021  NM_001317107         OR4E1
16  chr14   21944306       22166021     NM_019852        METTL3
18  chr14   21944306       22166021     NR_111966         SALL2
20   chr2  110161545      110291866  NM_001099289        SH3RF3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   89142685       89249118  NM_001143837       NOX4
6   chr14   21773567       22017208  NM_001163380      RAB2B
7   chr14   21773567       22017208  NM_001170629       CHD8
8   chr14   21773567       22017208  NM_001303523       TOX4
9   chr14   21773567       22017208     NM_007192    SUPT16H
10  chr14   21773567       22017208     NM_019852     METTL3
11  chr14   21773567       22017208     NM_020366    RPGRIP1
14  chr14   21773567       22017208     NR_002916     SNORD8
15  chr14   21773567       22017208     NR_003029     SNORD9
16  chr14   21773567       22017208     NR_111966      SALL2
18   chr4  189452297      189552595     NR_033869  LINC01060
19   chr5   82412856       82519613  NM_001318012      XRCC4,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   21751279       21906750  NM_001170629          CHD8
1  chr14   21751279       21906750     NM_007192       SUPT16H
2  chr14   21751279       21906750     NM_020366       RPGRIP1
4  chr14   21751279       21906750     NR_002916        SNORD8
5  chr14   21751279       21906750     NR_003029        SNORD9
6  chr20   41027210       41904665     NM_133170         PTPRT
7  chr20   41027210       41904665     NR_110004  LOC101927159,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   56506957       56796833  NM_001142770       PCDH15
3   chr22   19044058       20204551     NM_000407        GP1BB
4   chr22   19044058       20204551     NM_000754         COMT
5   chr22   19044058       20204551  NM_001009939        SEPT5
6   chr22   19044058       20204551  NM_001035247        UFD1L
9   chr22   19044058       20204551  NM_001166242     C22orf39
10  chr22   19044058       20204551  NM_001178010        CDC45
11  chr22   19044058       20204551  NM_001184781        DGCR2
12  chr22   19044058       20204551  NM_001190326        DGCR8
13  chr22   19044058       20204551  NM_001243537      CCDC188
14  chr22   19044058       20204551  NM_001256534      SLC25A1
15  chr22   19044058       20204551  NM_001278639       RANBP1
18  chr22   19044058       20204551  NM_001282512       TXNRD2
19  chr22   19044058       20204551  NM_001283116       TANGO2
20  chr22   19044058       20204551  NM_001318151       MRPL40
24  chr22   19044058       20204551     NM_001670        ARVCF
25  chr22   19044058       20204551     NM_001835       CLTCL1
27  chr22   19044058       20204551     NM_003277        CLDN5
28  chr22   19044058       20204551     NM_003325         HIRA
30  chr22   19044058       20204551     NM_005315         GSC2
32  chr22   19044058       20204551     NM_005992         TBX1
35  chr22   19044058       20204551     NM_013373       ZDHHC8
36  chr22   19044058       20204551     NM_022719       DGCR14
37  chr22   19044058       20204551     NM_022727       TRMT2A
38  chr22   19044058       20204551     NM_024627     C22orf29
39  chr22   19044058       20204551     NM_053004        GNB1L
40  chr22   19044058       20204551     NM_053006        TSSK2
44  chr22   19044058       20204551     NR_024381    LINC00895
45  chr22   19044058       20204551     NR_026919    LINC00896
46  chr22   19044058       20204551     NR_029706       MIR185
47  chr22   19044058       20204551     NR_031706      MIR1306
48  chr22   19044058       20204551     NR_037412      MIR3618
49  chr22   19044058       20204551     NR_037611  SEPT5-GP1BB
51  chr22   19044058       20204551     NR_038460    LOC284865
52  chr22   19044058       20204551     NR_039918      MIR4761
53  chr22   19044058       20204551     NR_103767    LINC01311
54  chr22   19044058       20204551     NR_106874      MIR6816,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21777829       22203836  NM_001001912      OR4E2
1   chr14   21777829       22203836  NM_001005465     OR10G3
2   chr14   21777829       22203836  NM_001005466     OR10G2
3   chr14   21777829       22203836  NM_001163380      RAB2B
4   chr14   21777829       22203836  NM_001170629       CHD8
5   chr14   21777829       22203836  NM_001303523       TOX4
6   chr14   21777829       22203836  NM_001317107      OR4E1
7   chr14   21777829       22203836     NM_007192    SUPT16H
8   chr14   21777829       22203836     NM_019852     METTL3
9   chr14   21777829       22203836     NM_020366    RPGRIP1
12  chr14   21777829       22203836     NR_002916     SNORD8
13  chr14   21777829       22203836     NR_003029     SNORD9
14  chr14   21777829       22203836     NR_111966      SALL2
16   chr6    4268325        4539321     NR_106988  MIR7641-2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   83970943       84129138  NM_001010848       NRG3
2   chr10   83970943       84129138     NR_120666   NRG3-AS1
3   chr11    7814975        8139525  NM_001003745     OR10A3
4   chr11    7814975        8139525  NM_001004461     OR10A6
5   chr11    7814975        8139525  NM_001135109       RIC3
6   chr11    7814975        8139525     NM_003320        TUB
7   chr11    7814975        8139525     NM_003754      EIF3F
8   chr11    7814975        8139525     NM_153444      OR5P2
9   chr11    7814975        8139525     NM_153445      OR5P3
10  chr11    7814975        8139525     NM_176821     NLRP10
12  chr11    7814975        8139525     NR_027711     OR5E1P
13  chr11    7814975        8139525     NR_036678  LOC283299
15  chr11    7814975        8139525     NR_120537    TUB-AS1
16  chr11    7814975        8139525     NR_125366     CASC23
18  chr14   21812343       22079284  NM_001005465     OR10G3
19  chr14   21812343       22079284  NM_001163380      RAB2B
20  chr14   21812343       22079284  NM_001170629       CHD8
21  chr14   21812343       22079284  NM_001303523       TOX4
22  chr14   21812343       22079284     NM_007192    SUPT16H
23  chr14   21812343       22079284     NM_019852     METTL3
24  chr14   21812343       22079284     NM_020366    RPGRIP1
27  chr14   21812343       22079284     NR_002916     SNORD8
28  chr14   21812343       22079284     NR_003029     SNORD9
29  chr14   21812343       22079284     NR_111966      SALL2
31  chr15   20644305       20750761  NM_001145004   GOLGA6L6
32  chr15   20644305       20750761     NR_036432    HERC2P3
33  chr15   28726346       28860146     NR_033351    GOLGA8F
34  chr15   28726346       28860146     NR_033353    GOLGA8G
35  chr15   28726346       28860146     NR_039734  MIR4509-3
36   chr2  110165154      110277438  NM_001099289     SH3RF3
37   chr9   30401042       30528032     NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   73374830       74100161     NR_110676     LINC01360
2    chr1  245033883      245460494  NM_001143943        EFCAB2
4    chr1  245033883      245460494     NM_018012        KIF26B
6    chr1  245033883      245460494     NR_111907  LOC101928068
7   chr10   54201051       54306480     NR_120641     LINC01468
9   chr20   14625669       14726398     NM_080676       MACROD2
10  chr20   14645940       16178073  NM_001033087       MACROD2
12  chr20   14645940       16178073     NR_037841   MACROD2-AS1
14  chr20   14645940       16178073     NR_130924     LOC613266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   71549488       71752142     NM_004616        TSPAN8
1   chr16   18301899       19056974  NM_001004060         NOMO2
2   chr16   18301899       19056974     NM_001019        RPS15A
3   chr16   18301899       19056974  NM_001160364          TMC7
4   chr16   18301899       19056974  NM_001282511        NPIPA8
6   chr16   18301899       19056974  NM_001313858       ARL6IP1
8   chr16   18301899       19056974     NM_015092          SMG1
10  chr16   18301899       19056974     NR_003569       ABCC6P1
11  chr16   18301899       19056974     NR_036140     MIR3179-1
12  chr16   18301899       19056974     NR_036142     MIR3180-2
13  chr16   18301899       19056974     NR_036144     MIR3180-3
14  chr16   18301899       19056974     NR_037442     MIR3670-1
15  chr16   18301899       19056974     NR_103772  LOC100288162
16  chr16   18301899       19056974     NR_106971     MIR6511A4
17  chr16   18301899       19056974     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245056179      246484678  NM_001143943        EFCAB2
1    chr1  245056179      246484678  NM_001167740         SMYD3
3    chr1  245056179      246484678     NM_018012        KIF26B
6    chr1  245056179      246484678     NR_111907  LOC101928068
7   chr14   21737260       21847496     NM_007192       SUPT16H
8   chr14   21737260       21847496     NM_020366       RPGRIP1
9   chr14   21737260       21847496     NM_031314        HNRNPC
10   chr3   26030670       27111829  NM_001317808        LRRC3B
15   chr4   69230075       70481907     NM_001073       UGT2B11
16   chr4   69230075       70481907     NM_001075       UGT2B10
18   chr4   69230075       70481907     NM_001076       UGT2B15
19   chr4   69230075       70481907     NM_001077       UGT2B17
20   chr4   69230075       70481907  NM_001105677        UGT2A2
21   chr4   69230075       70481907  NM_001207004       UGT2B28
22   chr4   69230075       70481907  NM_001252274        UGT2A1
23   chr4   69230075       70481907  NM_001297615        UGT2B4
26   chr4   69230075       70481907  NM_001330719        UGT2B7
27   chr4   69230075       70481907     NM_014058     TMPRSS11E
28   chr4   69230075       70481907     NM_024743        UGT2A3
29   chr4   69230075       70481907     NR_136191  LOC105377267
30   chr4  128713821      128977313  NM_001190801          PLK4
31   chr4  128713821      128977313  NM_001317381        HSPA4L
34   chr4  128713821      128977313  NM_001319305        ABHD18
36   chr4  128713821      128977313     NM_152778         MFSD8
37   chr9     203515         327462  NM_001190458         DOCK8
38   chr9     203515         327462     NM_152569       C9orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21867341       22463020  NM_001001912         OR4E2
1   chr14   21867341       22463020  NM_001005465        OR10G3
2   chr14   21867341       22463020  NM_001005466        OR10G2
3   chr14   21867341       22463020  NM_001163380         RAB2B
4   chr14   21867341       22463020  NM_001170629          CHD8
5   chr14   21867341       22463020  NM_001303523          TOX4
6   chr14   21867341       22463020  NM_001317107         OR4E1
7   chr14   21867341       22463020     NM_019852        METTL3
10  chr14   21867341       22463020     NR_111966         SALL2
12  chr16   29494402       29625328     NR_049833     MIR3680-2
13  chr16   29494402       29625328     NR_135305        SMG1P2
15  chr16   76277933       76945908  NM_001322181       CNTNAP4
17  chr16   76277933       76945908     NR_039870       MIR4719
18  chr16   76277933       76945908     NR_110934  LOC101928203
19   chr5   19587356       19721981  NM_001291956         CDH18,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18233174       18549100  NM_001004060         NOMO2
1   chr16   18233174       18549100  NM_001282511        NPIPA8
2   chr16   18233174       18549100     NR_036140     MIR3179-1
3   chr16   18233174       18549100     NR_036142     MIR3180-2
4   chr16   18233174       18549100     NR_036144     MIR3180-3
5   chr16   18233174       18549100     NR_037442     MIR3670-1
6   chr16   18233174       18549100     NR_103772  LOC100288162
7   chr16   18233174       18549100     NR_106971     MIR6511A4
8   chr16   18233174       18549100     NR_107060     MIR6770-2
9    chr2   35653713       35760257     NR_039629      MIR548AD
10   chr3  196786194      197043663  NM_001204386          DLG1
13   chr3  196786194      197043663     NR_038289      DLG1-AS1
14   chr3  196786194      197043663     NR_039960       MIR4797,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   19892359       20129276  NM_001145442          POTEM
1   chr14   19892359       20129276     NR_073459        BMS1P18
2   chr14   19892359       20129276     NR_110505   LOC100508046
3   chr14   19892359       20129276     NR_110526        DUXAP10
4   chr14   19892359       20129276     NR_122111      LINC01296
6   chr14   19892359       20129276     NR_133911        BMS1P22
7   chr17    3378352        3801361     NM_000049           ASPA
8   chr17    3378352        3801361  NM_001014764           EMC6
9   chr17    3378352        3801361  NM_001114118          NCBP3
11  chr17    3378352        3801361  NM_001204698        TAX1BP3
12  chr17    3378352        3801361  NM_001321336        SPATA22
13  chr17    3378352        3801361     NM_002208          ITGAE
14  chr17    3378352        3801361     NM_002558          P2RX1
15  chr17    3378352        3801361     NM_004937           CTNS
16  chr17    3378352        3801361     NM_013276           SHPK
17  chr17    3378352        3801361     NM_018727          TRPV1
18  chr17    3378352        3801361     NM_031965           GSG2
19  chr17    3378352        3801361     NM_032294         CAMKK1
23  chr17    3378352        3801361     NM_145068          TRPV3
26  chr17    3378352        3801361     NM_175080          P2RX5
27  chr17    3378352        3801361     NR_037928  P2RX5-TAX1BP3
28   chr2  186296787      186817348     NM_173651          FSIP2
29   chr2  186296787      186817348     NR_110214   LOC101927196
32   chr2  186296787      186817348     NR_144453      FSIP2-AS1
34   chr7   64104574       64250095  NM_001282360         ZNF107
36   chr7   64104574       64250095     NR_106898        MIR6839
37   chr7  133198443      133311191     NM_021807          EXOC4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89094710       89548683  NM_001143837          NOX4
1   chr11   89094710       89548683  NM_001271942        TRIM77
6   chr11   89094710       89548683     NM_020358        TRIM49
7   chr11   89094710       89548683     NM_153696        FOLH1B
9   chr14   21788990       22487700  NM_001001912         OR4E2
10  chr14   21788990       22487700  NM_001005465        OR10G3
11  chr14   21788990       22487700  NM_001005466        OR10G2
12  chr14   21788990       22487700  NM_001163380         RAB2B
13  chr14   21788990       22487700  NM_001170629          CHD8
14  chr14   21788990       22487700  NM_001303523          TOX4
15  chr14   21788990       22487700  NM_001317107         OR4E1
16  chr14   21788990       22487700     NM_007192       SUPT16H
17  chr14   21788990       22487700     NM_019852        METTL3
18  chr14   21788990       22487700     NM_020366       RPGRIP1
21  chr14   21788990       22487700     NR_002916        SNORD8
22  chr14   21788990       22487700     NR_003029        SNORD9
23  chr14   21788990       22487700     NR_111966         SALL2
25   chr9   41891312       42399974  NM_001012419     ANKRD20A3
26   chr9   41891312       42399974  NM_001012421     ANKRD20A2
27   chr9   41891312       42399974     NR_003670        FGF7P3
28   chr9   41891312       42399974     NR_015363         GLIDR
31   chr9   41891312       42399974     NR_126048  LOC102724238
32   chr9   41891312       42399974     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21935764       22092105  NM_001005465        OR10G3
1   chr14   21935764       22092105  NM_001163380         RAB2B
2   chr14   21935764       22092105  NM_001303523          TOX4
3   chr14   21935764       22092105     NM_019852        METTL3
5   chr14   21935764       22092105     NR_111966         SALL2
7    chr6  162839525      164588046  NM_001080378         PACRG
9    chr6  162839525      164588046     NM_006775           QKI
10   chr6  162839525      164588046     NM_013988         PARK2
11   chr6  162839525      164588046     NR_028390     PACRG-AS1
12   chr6  162839525      164588046     NR_033862  DKFZp451B082
13   chr6  162839525      164588046     NR_037593          CAHM
14   chr6  162839525      164588046     NR_110871     PACRG-AS2
16   chr6  162839525      164588046     NR_122120     PACRG-AS3
17   chr6  162839525      164588046     NR_134620  LOC102724152
18   chr7   75781286       75914536  NM_001110199         SRRM3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12788903       13207227  NM_001009611      PRAMEF4
1    chr1   12788903       13207227  NM_001010889      PRAMEF6
2    chr1   12788903       13207227  NM_001010890      PRAMEF9
3    chr1   12788903       13207227  NM_001012276      PRAMEF8
4    chr1   12788903       13207227  NM_001013407      PRAMEF5
5    chr1   12788903       13207227  NM_001013631     HNRNPCL1
6    chr1   12788903       13207227  NM_001080830     PRAMEF12
7    chr1   12788903       13207227  NM_001099850     PRAMEF18
8    chr1   12788903       13207227  NM_001100631     PRAMEF22
9    chr1   12788903       13207227  NM_001136561     HNRNPCL2
10   chr1   12788903       13207227  NM_001146181     HNRNPCL3
11   chr1   12788903       13207227  NM_001146344     PRAMEF11
12   chr1   12788903       13207227  NM_001294139      PRAMEF1
13   chr1   12788903       13207227  NM_001302551     HNRNPCL4
14   chr1   12788903       13207227  NM_001306072     PRAMEF26
15   chr1   12788903       13207227  NM_001310134     PRAMEF25
17   chr1   12788903       13207227     NM_023014      PRAMEF2
18   chr1   12788903       13207227     NM_152290     C1orf158
19   chr1   12788903       13207227     NR_111945    PRAMEF36P
21  chr15   20626871       20912444  NM_001145004     GOLGA6L6
22  chr15   20626871       20912444     NR_027411     GOLGA8CP
23  chr15   20626871       20912444     NR_027992       NBEAP1
24  chr15   20626871       20912444     NR_036432      HERC2P3
25  chr20   14625025       14959561     NM_080676      MACROD2
26  chr20   14625025       14959561     NR_037841  MACROD2-AS1
28   chr3    4268735        4381925  NM_001243723       SETMAR
30   chr3   17304358       17709454  NM_001134381       TBC1D5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21843115       22509556  NM_001001912         OR4E2
1   chr14   21843115       22509556  NM_001005465        OR10G3
2   chr14   21843115       22509556  NM_001005466        OR10G2
3   chr14   21843115       22509556  NM_001163380         RAB2B
4   chr14   21843115       22509556  NM_001170629          CHD8
5   chr14   21843115       22509556  NM_001303523          TOX4
6   chr14   21843115       22509556  NM_001317107         OR4E1
7   chr14   21843115       22509556     NM_007192       SUPT16H
8   chr14   21843115       22509556     NM_019852        METTL3
11  chr14   21843115       22509556     NR_002916        SNORD8
12  chr14   21843115       22509556     NR_003029        SNORD9
13  chr14   21843115       22509556     NR_111966         SALL2
15  chr16   76596258       76971599     NR_039870       MIR4719
16  chr16   76596258       76971599     NR_110934  LOC101928203
17  chr21   22644652       22745727     NM_004540         NCAM2
18   chr7  110674273      110958816  NM_001099658         LRRN3
19   chr7  110674273      110958816  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  224727909      224908826  NM_001322302      CNIH3
4   chr22   18998211       19206125  NM_001184781      DGCR2
5   chr22   18998211       19206125  NM_001256534    SLC25A1
6   chr22   18998211       19206125     NM_001835     CLTCL1
7   chr22   18998211       19206125     NM_005315       GSC2
9   chr22   18998211       19206125     NM_022719     DGCR14
10  chr22   18998211       19206125     NM_053006      TSSK2
11  chr22   18998211       19206125     NR_024157     DGCR11
12  chr22   18998211       19206125     NR_024159      DGCR9
13  chr22   18998211       19206125     NR_026651     DGCR10
14  chr22   18998211       19206125     NR_103767  LINC01311
15  chr22   18998211       19206125     NR_110533      DGCR5
16   chr3  197225691      197363090     NM_203314       BDH1
18   chr3  197225691      197363090     NR_003266  LOC220729
19   chr4  182062498      182231610     NR_033918  LINC00290
20   chr9  116820822      116944578     NM_001633       AMBP
21   chr9  116820822      116944578     NM_032888    COL27A1
22   chr9  116820822      116944578     NM_138424      KIF12,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1   16561337       16670195     NM_018994     FBXO42
1   chr1   16561337       16670195     NM_030907       RSG1
2  chr10   54186240       54326274     NR_120641  LINC01468
4  chr14   21761086       21861360  NM_001170629       CHD8
5  chr14   21761086       21861360     NM_007192    SUPT16H
6  chr14   21761086       21861360     NM_020366    RPGRIP1
8  chr14   21761086       21861360     NR_003029     SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   81647168       81759523  NM_001256430         STON2
1   chr14   81647168       81759523  NM_001278940        GTF2A1
4   chr14   81647168       81759523     NR_003021       SNORA79
5   chr14   81647168       81759523     NR_135252  LOC101928504
6   chr15   58853547       59088514     NM_000236          LIPC
7   chr15   58853547       59088514  NM_001040450        FAM63B
9   chr15   58853547       59088514     NM_001110        ADAM10
10  chr15   58853547       59088514     NR_073415     HSP90AB4P
11  chr15   58853547       59088514     NR_135474  LOC101928725
12  chr16   16390614       17064458  NM_001282511        NPIPA8
13  chr16   16390614       17064458     NR_036140     MIR3179-1
14  chr16   16390614       17064458     NR_036141     MIR3180-1
15  chr16   16390614       17064458     NR_036142     MIR3180-2
16  chr16   16390614       17064458     NR_036447        PKD1P1
17  chr16   16390614       17064458     NR_103772  LOC100288162
18  chr16   16390614       17064458     NR_106766     MIR6511A1
19  chr16   16390614       17064458     NR_106971     MIR6511A4
20  chr16   16390614       17064458     NR_107060     MIR6770-2
21  chr16   16390614       17064458     NR_128713     MIR3670-4,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21915261       22045126  NM_001005465    OR10G3
1  chr14   21915261       22045126  NM_001163380     RAB2B
2  chr14   21915261       22045126  NM_001303523      TOX4
3  chr14   21915261       22045126     NM_019852    METTL3
5  chr14   21915261       22045126     NR_111966     SALL2
7   chr7   75877931       75990359  NM_001110199     SRRM3
8   chr7   75877931       75990359     NM_001540     HSPB1
9   chr7   75877931       75990359     NM_012479     YWHAG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21756125       22137226  NM_001001912         OR4E2
1   chr14   21756125       22137226  NM_001005465        OR10G3
2   chr14   21756125       22137226  NM_001005466        OR10G2
3   chr14   21756125       22137226  NM_001163380         RAB2B
4   chr14   21756125       22137226  NM_001170629          CHD8
5   chr14   21756125       22137226  NM_001303523          TOX4
6   chr14   21756125       22137226     NM_007192       SUPT16H
7   chr14   21756125       22137226     NM_019852        METTL3
8   chr14   21756125       22137226     NM_020366       RPGRIP1
11  chr14   21756125       22137226     NR_002916        SNORD8
12  chr14   21756125       22137226     NR_003029        SNORD9
13  chr14   21756125       22137226     NR_111966         SALL2
15  chr16   21526746       21672615  NM_001077180        METTL9
17  chr16   21526746       21672615     NM_005849         IGSF6
18  chr16   21526746       21672615     NR_002594      SLC7A5P2
19  chr16   21526746       21672615     NR_110930  LOC101927814
20  chr22   20588688       20691030     NR_136569     LOC729461
21  chr22   20588688       20691030     NR_136572  LOC101927859
22   chr6  129224824      129495820  NM_001079823         LAMA2
23   chr7   75754352       75866963  NM_001110199         SRRM3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10    1500470        1788366     NM_018702       ADARB2
1   chr10    1500470        1788366     NR_033387   ADARB2-AS1
2   chr11  102670457      102829367     NM_002422         MMP3
3   chr11  102670457      102829367     NM_002426        MMP12
4   chr11  102670457      102829367     NM_002427        MMP13
5   chr11  102670457      102829367     NR_038390       WTAPP1
6   chr14   21761861       21916439  NM_001170629         CHD8
7   chr14   21761861       21916439     NM_007192      SUPT16H
8   chr14   21761861       21916439     NM_020366      RPGRIP1
10  chr14   21761861       21916439     NR_002916       SNORD8
11  chr14   21761861       21916439     NR_003029       SNORD9
12  chr14   38214472       38350500  NM_001310135         TTC6
13  chr15   28589690       28767199     NR_033351      GOLGA8F
15  chr15   28589690       28767199     NR_033353      GOLGA8G
17  chr15   28589690       28767199     NR_039734    MIR4509-3
19   chr2  242418221      242866192  NM_001164356        THAP4
20   chr2  242418221      242866192  NM_001165031        DTYMK
21   chr2  242418221      242866192  NM_001167601         NEU4
23   chr2  242418221      242866192  NM_001271978        STK25
26   chr2  242418221      242866192  NM_001287249       D2HGDH
27   chr2  242418221      242866192  NM_001330161         ING5
29   chr2  242418221      242866192     NM_005018        PDCD1
30   chr2  242418221      242866192     NM_014808        FARP2
32   chr2  242418221      242866192     NM_022134      GAL3ST2
34   chr2  242418221      242866192     NM_032515          BOK
35   chr2  242418221      242866192     NM_173821         RTP5
36   chr2  242418221      242866192     NM_178326        ATG4B
37   chr2  242418221      242866192     NR_033346      BOK-AS1
38   chr2  242418221      242866192     NR_110220    LINC01237
39   chr2  242418221      242866192     NR_135766    LOC285095
42  chr20   14746173       14962937     NM_080676      MACROD2
43  chr20   14746173       14962937     NR_037841  MACROD2-AS1
45   chr9   17229889       17331423  NM_001114395        CNTLN,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   56506764       56657450  NM_001142770     PCDH15
3   chr13   54862596       55007800     NR_031628    MIR1297
4   chr14   21841703       22235649  NM_001001912      OR4E2
5   chr14   21841703       22235649  NM_001005465     OR10G3
6   chr14   21841703       22235649  NM_001005466     OR10G2
7   chr14   21841703       22235649  NM_001163380      RAB2B
8   chr14   21841703       22235649  NM_001170629       CHD8
9   chr14   21841703       22235649  NM_001303523       TOX4
10  chr14   21841703       22235649  NM_001317107      OR4E1
11  chr14   21841703       22235649     NM_007192    SUPT16H
12  chr14   21841703       22235649     NM_019852     METTL3
15  chr14   21841703       22235649     NR_002916     SNORD8
16  chr14   21841703       22235649     NR_003029     SNORD9
17  chr14   21841703       22235649     NR_111966      SALL2
19  chr17   47838148       48223372  NM_001077503       TAC4
20  chr17   47838148       48223372  NM_001199158       KAT7
21  chr17   47838148       48223372  NM_001199898       PDK2
24  chr17   47838148       48223372  NM_001242791   FLJ45513
25  chr17   47838148       48223372  NM_001257359     SAMD14
26  chr17   47838148       48223372     NM_001934       DLX4
27  chr17   47838148       48223372     NM_002204      ITGA3
29  chr17   47838148       48223372     NM_005220       DLX3
30  chr17   47838148       48223372     NM_030802    FAM117A
31  chr17   47838148       48223372     NM_032595    PPP1R9B
33  chr17   47838148       48223372     NR_038230  LOC284080
34  chr20   14622659       14861345     NM_080676    MACROD2
35   chr7    6756080        6897516  NM_001099697   RSPH10B2
36   chr7    6756080        6897516     NM_198097      CCZ1B
37   chr7    6756080        6897516     NR_002217     PMS2CL
38   chr7   75048633       75194508  NM_001099415    POM121C
39   chr7   75048633       75194508  NM_001243198       HIP1
40   chr7   75048633       75194508  NM_001306141     SPDYE5
41   chr7   75048633       75194508     NR_028059     PMS2P3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   54174592       54284319     NR_120641     LINC01468
2   chr16   16343955       16646696  NM_001004067         NOMO3
3   chr16   16343955       16646696  NM_001282511        NPIPA8
4   chr16   16343955       16646696     NR_036140     MIR3179-1
5   chr16   16343955       16646696     NR_036141     MIR3180-1
6   chr16   16343955       16646696     NR_036142     MIR3180-2
7   chr16   16343955       16646696     NR_036447        PKD1P1
8   chr16   16343955       16646696     NR_103772  LOC100288162
9   chr16   16343955       16646696     NR_106766     MIR6511A1
10  chr16   16343955       16646696     NR_106971     MIR6511A4
11  chr16   16343955       16646696     NR_107060     MIR6770-2
12  chr16   16343955       16646696     NR_128713     MIR3670-4
13   chr5   17621234       18149257     NR_134286     LOC646241
15   chr6  162609272      162712595     NM_013988         PARK2
16   chr9    9975744       10303911     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21792704       21894162  NM_001170629          CHD8
1   chr14   21792704       21894162     NM_007192       SUPT16H
2   chr14   21792704       21894162     NM_020366       RPGRIP1
4   chr14   21792704       21894162     NR_002916        SNORD8
5   chr14   21792704       21894162     NR_003029        SNORD9
6    chr5   23864806       24985463  NM_001317222         CDH10
8    chr5   23864806       24985463     NR_037896     LOC340107
9    chr5   23864806       24985463     NR_131245       C5orf17
10   chr5   99657669       99795390     NR_027503  LOC100133050
11   chr7   64057211       64274943  NM_001160183        ZNF138
12   chr7   64057211       64274943  NM_001282360        ZNF107
14   chr7   64057211       64274943     NR_077227  LOC100128885
16   chr7   64057211       64274943     NR_106898       MIR6839
17   chr7  110762384      110887824  NM_001099658         LRRN3
18   chr7  110762384      110887824  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18350792       18515680  NM_001004060         NOMO2
1  chr16   18350792       18515680  NM_001282511        NPIPA8
2  chr16   18350792       18515680     NR_036140     MIR3179-1
3  chr16   18350792       18515680     NR_036142     MIR3180-2
4  chr16   18350792       18515680     NR_036144     MIR3180-3
5  chr16   18350792       18515680     NR_037442     MIR3670-1
6  chr16   18350792       18515680     NR_103772  LOC100288162
7  chr16   18350792       18515680     NR_106971     MIR6511A4
8  chr16   18350792       18515680     NR_107060     MIR6770-2
9   chr9   28232062       28344075  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67348452       68273677     NM_000695       ALDH3B2
1   chr11   67348452       68273677     NM_000852         GSTP1
3   chr11   67348452       68273677  NM_001161473       ALDH3B1
4   chr11   67348452       68273677  NM_001164164        PPP6R3
5   chr11   67348452       68273677  NM_001166102        NDUFV1
6   chr11   67348452       68273677  NM_001243750         NUDT8
8   chr11   67348452       68273677  NM_001300907         KMT5B
11  chr11   67348452       68273677     NM_002335          LRP5
12  chr11   67348452       68273677     NM_002496        NDUFS8
13  chr11   67348452       68273677     NM_005995         TBX10
14  chr11   67348452       68273677     NM_006019        TCIRG1
17  chr11   67348452       68273677     NM_022338      C11orf24
18  chr11   67348452       68273677     NM_030930       UNC93B1
19  chr11   67348452       68273677     NM_080658          ACY3
21  chr11   67348452       68273677     NM_212469          CHKA
22  chr11   67348452       68273677     NR_024249      FAM86C2P
23  chr11   67348452       68273677     NR_033791        DOC2GP
24  chr11   67348452       68273677     NR_039840       MIR4691
25  chr11   67348452       68273677     NR_106811       MIR6753
26  chr11   67348452       68273677     NR_106963       MIR7113
27  chr11   67348452       68273677     NR_130935      C11orf72
28  chr14   21900520       22105526  NM_001005465        OR10G3
29  chr14   21900520       22105526  NM_001005466        OR10G2
30  chr14   21900520       22105526  NM_001163380         RAB2B
31  chr14   21900520       22105526  NM_001303523          TOX4
32  chr14   21900520       22105526     NM_019852        METTL3
33  chr14   21900520       22105526     NM_020920          CHD8
35  chr14   21900520       22105526     NR_111966         SALL2
37  chr14   42095427       42874453  NM_001346175         LRFN5
38  chr14   78361220       78505780  NM_001142545         ADCK1
39  chr15   22162653       22459158  NM_001004719         OR4M2
40  chr15   22162653       22459158  NM_001005241         OR4N4
41  chr15   22162653       22459158     NR_015416     LOC727924
42  chr15   22162653       22459158     NR_028067        OR4N3P
43  chr15   22162653       22459158     NR_110480  LOC101927079
45  chr15   22162653       22459158     NR_135694   IGHV1OR15-1
46  chr17   78127354       78360375     NM_000199          SGSH
47  chr17   78127354       78360375  NM_001166349      SLC26A11
48  chr17   78127354       78360375  NM_001256071        RNF213
49  chr17   78127354       78360375  NM_001257970        CARD14
53  chr17   78127354       78360375     NR_029376  LOC100294362,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   48310334       48628174  NM_001004702       OR4C3
1   chr11   48310334       48628174  NM_001004725       OR4S1
2   chr11   48310334       48628174  NM_001005512      OR4A47
3   chr11   48310334       48628174  NM_001005513      OR4C45
4   chr11  132198880      132384731  NM_001012393       OPCML
5   chr11  132198880      132384731  NM_001048209         NTM
9   chr17   48356835       48522940  NM_001166131        EME1
10  chr17   48356835       48522940  NM_001168215      TMEM92
11  chr17   48356835       48522940  NM_001288968       ACSF2
12  chr17   48356835       48522940     NM_016504      MRPL27
13  chr17   48356835       48522940     NM_018509      LRRC59
14  chr17   48356835       48522940     NM_022167       XYLT2
16  chr17   48356835       48522940     NR_125805  TMEM92-AS1
17   chr5  120015538      120243961  NM_001300783       PRR16
20   chr7   88230972       88570408     NM_152706     C7orf62
21   chr7   88230972       88570408     NM_181646     ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21851452       21992754  NM_001163380      RAB2B
1   chr14   21851452       21992754  NM_001170629       CHD8
2   chr14   21851452       21992754  NM_001303523       TOX4
3   chr14   21851452       21992754     NM_007192    SUPT16H
4   chr14   21851452       21992754     NM_019852     METTL3
7   chr14   21851452       21992754     NR_002916     SNORD8
8   chr14   21851452       21992754     NR_003029     SNORD9
9   chr14   21851452       21992754     NR_111966      SALL2
11   chr2   35649170       35760600     NR_039629   MIR548AD
12  chr22   20092851       20274737  NM_001190326      DGCR8
13  chr22   20092851       20274737  NM_001243537    CCDC188
14  chr22   20092851       20274737  NM_001278639     RANBP1
17  chr22   20092851       20274737     NM_013373     ZDHHC8
18  chr22   20092851       20274737     NM_022727     TRMT2A
19  chr22   20092851       20274737     NM_023004      RTN4R
20  chr22   20092851       20274737     NR_026919  LINC00896
21  chr22   20092851       20274737     NR_031618    MIR1286
22  chr22   20092851       20274737     NR_038460  LOC284865
23  chr22   20092851       20274737     NR_106874    MIR6816
24   chr5     129856         288766  NM_001080478    LRRC14B
25   chr5     129856         288766     NM_004168       SDHA
26   chr5     129856         288766     NM_013232      PDCD6
27   chr5     129856         288766     NM_052909   PLEKHG4B
28   chr5     129856         288766     NM_145265    CCDC127
30   chr5     129856         288766     NR_104613      HRAT5
31   chr7   14872136       15016243     NM_004080       DGKB,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   67995565       68196087  NM_001127384        CTNNA3
2  chr13   63308638       63442815     NR_047029     LINC00448
5  chr16   18316074       18452583  NM_001282511        NPIPA8
6  chr16   18316074       18452583     NR_103772  LOC100288162
7  chr16   18316074       18452583     NR_106971     MIR6511A4
8   chr7  125777142      126442963  NM_001127323          GRM8,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  241673621      241892027     NM_000143           FH
1    chr1  241673621      241892027     NM_001821         CHML
2    chr1  241673621      241892027     NM_003679          KMO
3    chr1  241673621      241892027     NM_014322         OPN3
4    chr1  241673621      241892027     NM_144625        WDR64
5   chr14   78321431       78637607  NM_001142545        ADCK1
6   chr14   78321431       78637607     NR_073547        NRXN3
7   chr15   85604132       85858230  NM_001243137        PDE8A
8   chr15   85604132       85858230  NM_001310153     GOLGA6L3
10  chr15   85604132       85858230     NR_049748    LOC642423
11  chr20   14884625       15076579     NM_080676      MACROD2
12  chr20   14884625       15076579     NR_037841  MACROD2-AS1
14   chr6  162393627      162525628     NM_013988        PARK2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   60316542       60487553     NM_031457        MS4A8
1   chr11   60316542       60487553     NR_026946    LINC00301
2   chr14   21943913       22697266  NM_001001912        OR4E2
3   chr14   21943913       22697266  NM_001005465       OR10G3
4   chr14   21943913       22697266  NM_001005466       OR10G2
5   chr14   21943913       22697266  NM_001163380        RAB2B
6   chr14   21943913       22697266  NM_001303523         TOX4
7   chr14   21943913       22697266  NM_001317107        OR4E1
8   chr14   21943913       22697266     NM_019852       METTL3
10  chr14   21943913       22697266     NR_111966        SALL2
12  chr20   14817335       15337896  NM_001033087      MACROD2
14  chr20   14817335       15337896     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244990845      245169179  NM_001143943        EFCAB2
2    chr1  244990845      245169179  NM_001312871         COX20
4    chr1  244990845      245169179     NM_004501        HNRNPU
7    chr1  244990845      245169179     NR_111907  LOC101928068
8    chr1  244990845      245169179     NR_132782      SNORA100
9   chr13   63336794       63467440     NR_047029     LINC00448
12   chr5   26965686       27084059     NM_016279          CDH9
13   chr7   64049790       64579254  NM_001007253        ERV3-1
14   chr7   64049790       64579254  NM_001160183        ZNF138
15   chr7   64049790       64579254  NM_001282360        ZNF107
16   chr7   64049790       64579254     NM_015852        ZNF117
17   chr7   64049790       64579254     NM_021148        ZNF273
18   chr7   64049790       64579254     NR_033416        CCT6P3
20   chr7   64049790       64579254     NR_077227  LOC100128885
22   chr7   64049790       64579254     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr10   68036503       68147462  NM_001127384         CTNNA3
2   chr16   14862964       15336970  NM_001270767          NTAN1
3   chr16   14862964       15336970  NM_001285445         PDXDC1
8   chr16   14862964       15336970  NM_001301064           RRN3
10  chr16   14862964       15336970     NM_006985         NPIPA1
11  chr16   14862964       15336970     NM_014287          NOMO1
12  chr16   14862964       15336970     NR_023387        ABCC6P2
13  chr16   14862964       15336970     NR_036140      MIR3179-1
14  chr16   14862964       15336970     NR_036141      MIR3180-1
15  chr16   14862964       15336970     NR_036142      MIR3180-2
16  chr16   14862964       15336970     NR_037466      MIR3180-4
17  chr16   14862964       15336970     NR_103772   LOC100288162
18  chr16   14862964       15336970     NR_106775      MIR6511B1
19  chr16   14862964       15336970     NR_106965      MIR6511B2
20  chr16   14862964       15336970     NR_106970      MIR6511A3
21  chr16   14862964       15336970     NR_107060      MIR6770-2
22  chr16   14862964       15336970     NR_123721  PKD1P6-NPIPP1
24  chr16   14862964       15336970     NR_125434   LOC100505915
25  chr16   14862964       15336970     NR_128713      MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   76021299       76139390  NM_001130058       SLC44A5
4    chr1  145328665      145798234  NM_001012758        NUDT17
5    chr1  145328665      145798234  NM_001039888      ANKRD34A
6    chr1  145328665      145798234  NM_001097612        GPR89A
7    chr1  145328665      145798234  NM_001184795        PEX11B
8    chr1  145328665      145798234  NM_001201325         PDZK1
9    chr1  145328665      145798234  NM_001277444         NBPF9
10   chr1  145328665      145798234  NM_001278267        NBPF20
11   chr1  145328665      145798234  NM_001280799       ANKRD35
12   chr1  145328665      145798234  NM_001302371        NBPF10
13   chr1  145328665      145798234  NM_001303040        ITGA10
14   chr1  145328665      145798234  NM_001303456        POLR3C
15   chr1  145328665      145798234  NM_001313972         TXNIP
17   chr1  145328665      145798234     NM_005105         RBM8A
18   chr1  145328665      145798234     NM_006099         PIAS3
21   chr1  145328665      145798234     NM_007053         CD160
22   chr1  145328665      145798234     NM_014455        RNF115
23   chr1  145328665      145798234     NM_032305       POLR3GL
24   chr1  145328665      145798234     NM_145277          HFE2
25   chr1  145328665      145798234     NM_153713         LIX1L
26   chr1  145328665      145798234     NR_002328        GNRHR2
30   chr1  145328665      145798234     NR_104217       NBPF25P
31   chr1  145328665      145798234     NR_106794       MIR6736
32   chr1  145328665      145798234     NR_125967  LOC101928979
33  chr14   21843861       21980651  NM_001163380         RAB2B
34  chr14   21843861       21980651  NM_001170629          CHD8
35  chr14   21843861       21980651  NM_001303523          TOX4
36  chr14   21843861       21980651     NM_007192       SUPT16H
37  chr14   21843861       21980651     NM_019852        METTL3
40  chr14   21843861       21980651     NR_002916        SNORD8
41  chr14   21843861       21980651     NR_003029        SNORD9
42   chr9   28542239       28762543  NM_001258282        LINGO2,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr14   21709974       21866315  NM_001170629        CHD8
1  chr14   21709974       21866315     NM_007192     SUPT16H
2  chr14   21709974       21866315     NM_020366     RPGRIP1
4  chr14   21709974       21866315     NM_031314      HNRNPC
5  chr14   21709974       21866315     NR_002916      SNORD8
6  chr14   21709974       21866315     NR_003029      SNORD9
7   chr5  127785466      127907000     NM_001999        FBN2
8   chr5  151341208      151739275     NR_109876  CTB-12O2.1
9   chr9   28511202       28644700  NM_001258282      LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152457118      152582133     NM_019060         CRCT1
1    chr1  152457118      152582133     NM_032563         LCE3D
2    chr1  152457118      152582133     NM_178434         LCE3C
3    chr1  152457118      152582133     NM_178435         LCE3E
4    chr1  152457118      152582133     NM_178438         LCE5A
5   chr10   67662457       67765617  NM_001127384        CTNNA3
7   chr20   14810456       14921826     NM_080676       MACROD2
8   chr20   14810456       14921826     NR_037841   MACROD2-AS1
10   chr7  143014563      143123871     NM_000083         CLCN1
11   chr7  143014563      143123871  NM_001278297       FAM131B
12   chr7  143014563      143123871  NM_001322263  LOC100507507
13   chr7  143014563      143123871     NM_003461           ZYX
14   chr7  143014563      143123871     NM_005232         EPHA1
16   chr7  143014563      143123871     NR_033897     EPHA1-AS1
17   chr7  143014563      143123871     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21845099       22014645  NM_001163380         RAB2B
1   chr14   21845099       22014645  NM_001170629          CHD8
2   chr14   21845099       22014645  NM_001303523          TOX4
3   chr14   21845099       22014645     NM_007192       SUPT16H
4   chr14   21845099       22014645     NM_019852        METTL3
7   chr14   21845099       22014645     NR_002916        SNORD8
8   chr14   21845099       22014645     NR_003029        SNORD9
9   chr14   21845099       22014645     NR_111966         SALL2
11  chr15   36186530       36351117     NR_039735       MIR4510
12  chr15   78375473       78910034     NM_000743        CHRNA3
13  chr15   78375473       78910034  NM_001013619          HYKK
15  chr15   78375473       78910034  NM_001101404         SH2D7
16  chr15   78375473       78910034  NM_001130182        DNAJA4
19  chr15   78375473       78910034  NM_001199377        ACSBG1
20  chr15   78375473       78910034  NM_001301224          CIB2
21  chr15   78375473       78910034  NM_001303247         WDR61
22  chr15   78375473       78910034  NM_001307945        CHRNA5
23  chr15   78375473       78910034  NM_001320941         IREB2
26  chr15   78375473       78910034  NM_001330676         PSMA4
28  chr15   78375473       78910034     NM_004378        CRABP1
29  chr15   78375473       78910034     NM_005530         IDH3A
31  chr21   23016784       23145542     NR_038872     LINC00317
32  chr21   23016784       23145542     NR_109958     LINC01425
33   chr3   37820623       39163732     NM_000335         SCN5A
34   chr3   37820623       39163732  NM_001105513        TTC21A
35   chr3   37820623       39163732     NM_001106        ACVR2B
37   chr3   37820623       39163732  NM_001172567         MYD88
38   chr3   37820623       39163732  NM_001287223        SCN11A
39   chr3   37820623       39163732  NM_001293306        SCN10A
40   chr3   37820623       39163732  NM_001318956          EXOG
41   chr3   37820623       39163732  NM_001320033      SLC22A14
42   chr3   37820623       39163732  NM_001346226         WDR48
44   chr3   37820623       39163732     NM_002207         ITGA9
45   chr3   37820623       39163732     NM_004256      SLC22A13
47   chr3   37820623       39163732     NM_005108          XYLB
48   chr3   37820623       39163732     NM_005109         OXSR1
49   chr3   37820623       39163732     NM_005808        CTDSPL
50   chr3   37820623       39163732     NM_006225         PLCD1
51   chr3   37820623       39163732     NM_007337         DLEC1
53   chr3   37820623       39163732     NM_015873          VILL
54   chr3   37820623       39163732     NM_031899       GORASP1
55   chr3   37820623       39163732     NR_024024         ACAA1
57   chr3   37820623       39163732     NR_028389    ACVR2B-AS1
58   chr3   37820623       39163732     NR_029499       MIR26A1
60   chr3   37820623       39163732     NR_110531     ITGA9-AS1
62   chr9   39062112       39236836     NM_033655       CNTNAP3
63   chr9   41887052       42091000     NR_003670        FGF7P3
64   chr9   41887052       42091000     NR_015363         GLIDR
67   chr9   41887052       42091000     NR_126048  LOC102724238
68   chr9   41887052       42091000     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21859380       22101233  NM_001005465     OR10G3
1   chr14   21859380       22101233  NM_001163380      RAB2B
2   chr14   21859380       22101233  NM_001170629       CHD8
3   chr14   21859380       22101233  NM_001303523       TOX4
4   chr14   21859380       22101233     NM_019852     METTL3
7   chr14   21859380       22101233     NR_002916     SNORD8
8   chr14   21859380       22101233     NR_003029     SNORD9
9   chr14   21859380       22101233     NR_111966      SALL2
11  chr19   23466955       23811562  NM_001300951      ZNF91
12  chr19   23466955       23811562     NR_126448  LINC01224
13   chr4  145179640      145971282  NM_001256706    ANAPC10
16   chr4  145179640      145971282     NM_022475       HHIP
17   chr4  145179640      145971282     NR_037595   HHIP-AS1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143658218      143928453  NM_001123068       PPIAL4G
1  chr1  143658218      143928453  NM_001287385        FAM72C
2  chr1  143658218      143928453  NM_001345942        FAM72D
6  chr1  143658218      143928453     NR_104014     LINC01138
7  chr1  143658218      143928453     NR_106967       MIR6077
8  chr1  143658218      143928453     NR_111930  LOC100132057,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr14   21818884       21942831  NM_001163380        RAB2B
1  chr14   21818884       21942831  NM_001170629         CHD8
2  chr14   21818884       21942831     NM_007192      SUPT16H
3  chr14   21818884       21942831     NM_020366      RPGRIP1
6  chr14   21818884       21942831     NR_002916       SNORD8
7  chr14   21818884       21942831     NR_003029       SNORD9
8  chr20   14678101       14937255     NM_080676      MACROD2
9  chr20   14678101       14937255     NR_037841  MACROD2-AS1,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr14   21691758       21826997     NM_007192     SUPT16H
1  chr14   21691758       21826997     NM_020366     RPGRIP1
2  chr14   21691758       21826997     NM_031314      HNRNPC
3  chr20   25378694       25658569  NM_001290261      ZNF337
4  chr20   25378694       25658569  NM_001318226        NINL
6  chr20   25378694       25658569     NM_021067       GINS1
7  chr20   25378694       25658569     NM_152667        NANP
8  chr20   25378694       25658569     NR_126465  ZNF337-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21837327       22025945  NM_001163380         RAB2B
1   chr14   21837327       22025945  NM_001170629          CHD8
2   chr14   21837327       22025945  NM_001303523          TOX4
3   chr14   21837327       22025945     NM_007192       SUPT16H
4   chr14   21837327       22025945     NM_019852        METTL3
7   chr14   21837327       22025945     NR_002916        SNORD8
8   chr14   21837327       22025945     NR_003029        SNORD9
9   chr14   21837327       22025945     NR_111966         SALL2
11  chr15   98207214       99459046  NM_001291858         IGF1R
12  chr15   98207214       99459046     NM_182562       FAM169B
13  chr15   98207214       99459046     NM_183376        ARRDC4
14  chr15   98207214       99459046     NR_024172     LINC00923
15  chr15   98207214       99459046     NR_039864       MIR4714
16  chr15   98207214       99459046     NR_120325     LINC01582
17  chr15   98207214       99459046     NR_126453         IRAIN
18  chr19    1755707        1877819  NM_001080488       ONECUT3
19  chr19    1755707        1877819  NM_001130111       ABHD17A
20  chr19    1755707        1877819  NM_001178002        ATP8B3
21  chr19    1755707        1877819     NM_020695         REXO1
22  chr19    1755707        1877819     NM_031918         KLF16
24  chr19    1755707        1877819     NR_031730       MIR1909
25  chr19    1755707        1877819     NR_034114  LOC100288123,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  108398011      108613337     NM_006113         VAV3
1    chr1  108398011      108613337     NR_046653     VAV3-AS1
2    chr1  108398011      108613337     NR_107006      MIR7852
3   chr10   55685030       55829703  NM_001142770       PCDH15
6   chr14   21936921       22078965  NM_001005465       OR10G3
7   chr14   21936921       22078965  NM_001163380        RAB2B
8   chr14   21936921       22078965  NM_001303523         TOX4
9   chr14   21936921       22078965     NM_019852       METTL3
11  chr14   21936921       22078965     NR_111966        SALL2
13  chr15   28191867       28297560     NM_000275         OCA2
15  chr20   14685465       14894369     NM_080676      MACROD2
16  chr20   14685465       14894369     NR_037841  MACROD2-AS1
18  chr20   41080052       41191696     NM_133170        PTPRT
19   chr4   94061762       94281707     NM_001510        GRID2
20   chr6    4271937        4649792     NR_106988    MIR7641-2
21   chr6    4271937        4649792     NR_122107     KU-MEL-3
22   chr7   85950630       86607243     NM_000840         GRM3
23   chr7   85950630       86607243  NM_001142749    KIAA1324L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   86008222       86440453     NM_032229       SLITRK6
1   chr13   86008222       86440453     NR_046989     LINC00351
2   chr15   28645936       29609126  NM_001130414         APBA2
3   chr15   28645936       29609126  NM_001282468       GOLGA8M
4   chr15   28645936       29609126     NM_015307      FAM189A1
5   chr15   28645936       29609126     NM_138704        NSMCE3
6   chr15   28645936       29609126     NR_026589       WHAMMP2
7   chr15   28645936       29609126     NR_033351       GOLGA8F
8   chr15   28645936       29609126     NR_033353       GOLGA8G
9   chr15   28645936       29609126     NR_036443       HERC2P9
10  chr15   28645936       29609126     NR_036475  LOC100289656
11  chr15   28645936       29609126     NR_037599     PDCD6IPP2
12  chr15   28645936       29609126     NR_039734     MIR4509-3
14  chr15   28645936       29609126     NR_047567     GOLGA6L7P
15  chr17   47858933       48107930  NM_001077503          TAC4
16  chr17   47858933       48107930  NM_001199158          KAT7
17  chr17   47858933       48107930  NM_001242791      FLJ45513
18  chr17   47858933       48107930     NM_001934          DLX4
19  chr17   47858933       48107930     NM_005220          DLX3
21  chr21   23467787       23568356     NR_038400     LINC00308
22  chr21   23467787       23568356     NR_109959  LOC101927843,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72654057       72757721     NM_013381         TRHDE
1   chr12   72654057       72757721     NR_026836     TRHDE-AS1
3   chr15   28475149       29796504  NM_001130414         APBA2
4   chr15   28475149       29796504  NM_001282468       GOLGA8M
5   chr15   28475149       29796504     NM_004667         HERC2
6   chr15   28475149       29796504     NM_015307      FAM189A1
7   chr15   28475149       29796504     NM_138704        NSMCE3
8   chr15   28475149       29796504     NR_026589       WHAMMP2
9   chr15   28475149       29796504     NR_033351       GOLGA8F
11  chr15   28475149       29796504     NR_033353       GOLGA8G
13  chr15   28475149       29796504     NR_036443       HERC2P9
14  chr15   28475149       29796504     NR_036475  LOC100289656
15  chr15   28475149       29796504     NR_037599     PDCD6IPP2
16  chr15   28475149       29796504     NR_039734     MIR4509-3
18  chr15   28475149       29796504     NR_047567     GOLGA6L7P,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21804633       22252604  NM_001001912      OR4E2
1   chr14   21804633       22252604  NM_001005465     OR10G3
2   chr14   21804633       22252604  NM_001005466     OR10G2
3   chr14   21804633       22252604  NM_001163380      RAB2B
4   chr14   21804633       22252604  NM_001170629       CHD8
5   chr14   21804633       22252604  NM_001303523       TOX4
6   chr14   21804633       22252604  NM_001317107      OR4E1
7   chr14   21804633       22252604     NM_007192    SUPT16H
8   chr14   21804633       22252604     NM_019852     METTL3
9   chr14   21804633       22252604     NM_020366    RPGRIP1
12  chr14   21804633       22252604     NR_002916     SNORD8
13  chr14   21804633       22252604     NR_003029     SNORD9
14  chr14   21804633       22252604     NR_111966      SALL2
16  chr15   28544817       28675138     NM_004667      HERC2
17  chr15   28544817       28675138     NR_033351    GOLGA8F
18  chr15   28544817       28675138     NR_033353    GOLGA8G
19  chr15   28544817       28675138     NR_039734  MIR4509-3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  241501499      241830801     NM_000143        FH
1  chr1  241501499      241830801  NM_001282773      RGS7
2  chr1  241501499      241830801     NM_001821      CHML
3  chr1  241501499      241830801     NM_003679       KMO
4  chr1  241501499      241830801     NM_014322      OPN3
5  chr1  241501499      241830801     NM_144625     WDR64
6  chr3    2222357        2355373  NM_001206955     CNTN4
8  chr5   23792976       23998051     NR_131245   C5orf17,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21922454       22052245  NM_001005465    OR10G3
1  chr14   21922454       22052245  NM_001163380     RAB2B
2  chr14   21922454       22052245  NM_001303523      TOX4
3  chr14   21922454       22052245     NM_019852    METTL3
5  chr14   21922454       22052245     NR_111966     SALL2
7   chr9  101890584      102063688     NM_004612    TGFBR1
8   chr9  101890584      102063688     NM_006808    SEC61B
9   chr9  101890584      102063688     NM_033087      ALG2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21799532       21905236  NM_001170629       CHD8
1   chr14   21799532       21905236     NM_007192    SUPT16H
2   chr14   21799532       21905236     NM_020366    RPGRIP1
4   chr14   21799532       21905236     NR_002916     SNORD8
5   chr14   21799532       21905236     NR_003029     SNORD9
6    chr5   17600564       17856737     NR_134286  LOC646241
8    chr7  110776307      111159332  NM_001244606     IMMP2L
10   chr8    3671555        3926030     NM_033225      CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21793555       21925413  NM_001170629          CHD8
1   chr14   21793555       21925413     NM_007192       SUPT16H
2   chr14   21793555       21925413     NM_020366       RPGRIP1
4   chr14   21793555       21925413     NR_002916        SNORD8
5   chr14   21793555       21925413     NR_003029        SNORD9
6   chr15   30267481       30870385  NM_001282472       GOLGA8J
7   chr15   30267481       30870385  NM_001282484       GOLGA8R
8   chr15   30267481       30870385     NM_139320      CHRFAM7A
9   chr15   30267481       30870385     NR_026771  DKFZP434L187
10  chr15   30267481       30870385     NR_026858        ULK4P1
11  chr15   30267481       30870385     NR_026859        ULK4P3
12  chr15   30267481       30870385     NR_033933       GOLGA8T
13  chr15   77630035       77751715  NM_001304505        HMG20A
14  chr15   77630035       77751715     NM_024776         PEAK1
15  chr16   76544853       76773276  NM_001322181       CNTNAP4
17  chr16   76544853       76773276     NR_110934  LOC101928203
18   chr2  214246824      214586260     NM_024532        SPAG16
19   chr5   13423626       13857910     NM_001369         DNAH5,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21900683       22042603  NM_001005465     OR10G3
1   chr14   21900683       22042603  NM_001163380      RAB2B
2   chr14   21900683       22042603  NM_001303523       TOX4
3   chr14   21900683       22042603     NM_019852     METTL3
4   chr14   21900683       22042603     NM_020920       CHD8
6   chr14   21900683       22042603     NR_111966      SALL2
8    chr9  132400993      132553866     NM_004878      PTGES
9    chr9  132400993      132553866     NM_016307      PRRX2
10   chr9  132400993      132553866     NM_177999       ASB6
11   chr9  132400993      132553866     NR_132102  PRRX2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  190054446      190212410  NM_001317188        BRINP3
2   chr16   21718862       21934995  NM_001161683          OTOA
3   chr16   21718862       21934995  NM_001310148        NPIPB4
6   chr16   21718862       21934995     NR_003370        RRN3P1
7   chr16   29527871       29656949     NR_049833     MIR3680-2
8   chr16   29527871       29656949     NR_135305        SMG1P2
10   chr4  130577977      131142499     NR_110753  LOC101927282,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81516121       81787072     NM_003019       SFTPD
1   chr10   81516121       81787072     NR_002724       MBL1P
2   chr10   81516121       81787072     NR_029407   LOC642361
3   chr10   81516121       81787072     NR_033857     BMS1P21
4   chr10   81516121       81787072     NR_120611  NUTM2B-AS1
7   chr14   21892982       22153043  NM_001001912       OR4E2
8   chr14   21892982       22153043  NM_001005465      OR10G3
9   chr14   21892982       22153043  NM_001005466      OR10G2
10  chr14   21892982       22153043  NM_001163380       RAB2B
11  chr14   21892982       22153043  NM_001170629        CHD8
12  chr14   21892982       22153043  NM_001303523        TOX4
13  chr14   21892982       22153043  NM_001317107       OR4E1
14  chr14   21892982       22153043     NM_019852      METTL3
17  chr14   21892982       22153043     NR_111966       SALL2
19  chr14   42221127       42422397  NM_001346175       LRFN5
20   chr3    1963802        2225047     NM_175607       CNTN4
21   chr3    1963802        2225047     NR_046555   CNTN4-AS2
22   chr4   69316558       69905636     NM_001075     UGT2B10
24   chr4   69316558       69905636     NM_001076     UGT2B15
25   chr4   69316558       69905636     NM_001077     UGT2B17
26   chr4   69316558       69905636     NM_014058   TMPRSS11E
27   chr4   69316558       69905636     NM_024743      UGT2A3
28   chr6  162581754      162911056     NM_013988       PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12854137       12969354  NM_001009611    PRAMEF4
1    chr1   12854137       12969354  NM_001013631   HNRNPCL1
2    chr1   12854137       12969354  NM_001146181   HNRNPCL3
3    chr1   12854137       12969354  NM_001146344   PRAMEF11
4    chr1   12854137       12969354  NM_001294139    PRAMEF1
5    chr1   12854137       12969354  NM_001302551   HNRNPCL4
7    chr1   12854137       12969354     NM_023014    PRAMEF2
8   chr12  130205103      130342786     NM_133448   TMEM132D
9   chr14   21806539       21958390  NM_001163380      RAB2B
10  chr14   21806539       21958390  NM_001170629       CHD8
11  chr14   21806539       21958390  NM_001303523       TOX4
12  chr14   21806539       21958390     NM_007192    SUPT16H
13  chr14   21806539       21958390     NM_020366    RPGRIP1
16  chr14   21806539       21958390     NR_002916     SNORD8
17  chr14   21806539       21958390     NR_003029     SNORD9
18  chr18   64252517       64505766     NM_021153      CDH19
19   chr3     377220        1666883  NM_001253387       CHL1
21   chr3     377220        1666883  NM_001289081      CNTN6
22   chr3     377220        1666883     NR_110118  LINC01266
23   chr3     377220        1666883     NR_110739   CHL1-AS1
24   chr5   12405490       12762482     NR_033383  LINC01194
25   chr5   12405490       12762482     NR_039659    MIR4454
26   chr9    6599472        6707220     NM_000170       GLDC
27   chr9   41866578       41968623     NR_003670     FGF7P3
28   chr9   41866578       41968623     NR_015363      GLIDR,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21818847       21943570  NM_001163380     RAB2B
1  chr14   21818847       21943570  NM_001170629      CHD8
2  chr14   21818847       21943570     NM_007192   SUPT16H
3  chr14   21818847       21943570     NM_020366   RPGRIP1
6  chr14   21818847       21943570     NR_002916    SNORD8
7  chr14   21818847       21943570     NR_003029    SNORD9
8  chr17   21219146       21333058  NM_001194958    KCNJ18
9  chr17   21219146       21333058     NM_021012    KCNJ12,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81488112       81741474     NM_003019         SFTPD
1   chr10   81488112       81741474     NR_002724         MBL1P
2   chr10   81488112       81741474     NR_029407     LOC642361
3   chr10   81488112       81741474     NR_033857       BMS1P21
4   chr10   81488112       81741474     NR_120611    NUTM2B-AS1
7   chr11  131423085      131580696  NM_001048209           NTM
8   chr11  131423085      131580696     NR_126159       NTM-AS1
9    chr2   62154807       62260426  NM_001321781        COMMD1
11   chr3  131307418      131423513  NM_001289112         CPNE4
14   chr9   44286808       44399983     NR_121564  LOC101927827,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68586146       68722936  NM_001127384        CTNNA3
2   chr10   68586146       68722936     NM_178011        LRRTM3
3   chr10   68586146       68722936     NR_111911  LOC101928961
4   chr10   81519229       81713468     NM_003019         SFTPD
5   chr10   81519229       81713468     NR_002724         MBL1P
6   chr10   81519229       81713468     NR_029407     LOC642361
7   chr10   81519229       81713468     NR_033857       BMS1P21
8   chr10   81519229       81713468     NR_120611    NUTM2B-AS1
11  chr11   79106245       79218982  NM_001098816         TENM4
12  chr11   79106245       79218982     NR_030598        MIR708
13  chr11   79106245       79218982     NR_049841       MIR5579
14  chr14   21845765       22399661  NM_001001912         OR4E2
15  chr14   21845765       22399661  NM_001005465        OR10G3
16  chr14   21845765       22399661  NM_001005466        OR10G2
17  chr14   21845765       22399661  NM_001163380         RAB2B
18  chr14   21845765       22399661  NM_001170629          CHD8
19  chr14   21845765       22399661  NM_001303523          TOX4
20  chr14   21845765       22399661  NM_001317107         OR4E1
21  chr14   21845765       22399661     NM_007192       SUPT16H
22  chr14   21845765       22399661     NM_019852        METTL3
25  chr14   21845765       22399661     NR_002916        SNORD8
26  chr14   21845765       22399661     NR_003029        SNORD9
27  chr14   21845765       22399661     NR_111966         SALL2
29  chr16   79808043       80312028     NR_104660     LINC01229
31  chr16   79808043       80312028     NR_120307  LOC102724084
32   chr2   51097147       51201430  NM_001330079         NRXN1
35   chr6   57627945       58242438     NR_132999        GUSBP4
36   chr9   30391749       30615848     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21790946       21936815  NM_001163380     RAB2B
1   chr14   21790946       21936815  NM_001170629      CHD8
2   chr14   21790946       21936815     NM_007192   SUPT16H
3   chr14   21790946       21936815     NM_020366   RPGRIP1
6   chr14   21790946       21936815     NR_002916    SNORD8
7   chr14   21790946       21936815     NR_003029    SNORD9
8   chr15   43791462       43948097  NM_001190214   PPIP5K1
9   chr15   43791462       43948097  NM_001282309  CATSPER2
10  chr15   43791462       43948097     NM_002373     MAP1A
11  chr15   43791462       43948097     NM_005657   TP53BP1
13  chr15   43791462       43948097     NM_020990    CKMT1B
14  chr15   43791462       43948097     NM_153700      STRC,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   28745198       29262460  NM_001130414         APBA2
1  chr15   28745198       29262460  NM_001282468       GOLGA8M
2  chr15   28745198       29262460     NR_026589       WHAMMP2
3  chr15   28745198       29262460     NR_033351       GOLGA8F
4  chr15   28745198       29262460     NR_033353       GOLGA8G
5  chr15   28745198       29262460     NR_036443       HERC2P9
6  chr15   28745198       29262460     NR_036475  LOC100289656
7  chr15   28745198       29262460     NR_037599     PDCD6IPP2
8  chr15   28745198       29262460     NR_047567     GOLGA6L7P,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21855161       21994026  NM_001163380      RAB2B
1   chr14   21855161       21994026  NM_001170629       CHD8
2   chr14   21855161       21994026  NM_001303523       TOX4
3   chr14   21855161       21994026     NM_019852     METTL3
6   chr14   21855161       21994026     NR_002916     SNORD8
7   chr14   21855161       21994026     NR_003029     SNORD9
8   chr14   21855161       21994026     NR_111966      SALL2
10  chr22   20079865       20227582  NM_001190326      DGCR8
11  chr22   20079865       20227582  NM_001243537    CCDC188
12  chr22   20079865       20227582  NM_001278639     RANBP1
15  chr22   20079865       20227582     NM_013373     ZDHHC8
16  chr22   20079865       20227582     NM_022727     TRMT2A
17  chr22   20079865       20227582     NR_026919  LINC00896
18  chr22   20079865       20227582     NR_038460  LOC284865
19  chr22   20079865       20227582     NR_106874    MIR6816
20   chr5   63154953       63274039     NM_000524      HTR1A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143714870      144072624  NM_001123068       PPIAL4G
1    chr1  143714870      144072624  NM_001287385        FAM72C
2    chr1  143714870      144072624  NM_001345942        FAM72D
6    chr1  143714870      144072624     NR_104014     LINC01138
7    chr1  143714870      144072624     NR_111930  LOC100132057
9   chr11    4810108        4954986  NM_001004749        OR51A7
10  chr11    4810108        4954986  NM_001004753        OR51F2
11  chr11    4810108        4954986  NM_001004758        OR51S1
12  chr11    4810108        4954986  NM_001004759        OR51T1
13  chr11    4810108        4954986  NM_001005177        OR52R1
14  chr11    4810108        4954986  NM_001005237        OR51G1
15  chr11    4810108        4954986  NM_001005238        OR51G2
16   chr2  134031903      134312891     NM_207363        NCKAP5
17   chr2  134031903      134312891     NR_110294  LOC101928161
18  chr20   14714734       14876304     NM_080676       MACROD2
19  chr20   14714734       14876304     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  215769057      215883295  NM_001319294          KCTD3
1    chr1  215769057      215883295     NM_206933          USH2A
2   chr11    7635832        7949459  NM_001004461         OR10A6
3   chr11    7635832        7949459  NM_001256568        PPFIBP2
5   chr11    7635832        7949459  NM_001302826         CYB5R2
9   chr11    7635832        7949459     NM_153444          OR5P2
10  chr11    7635832        7949459     NM_153445          OR5P3
11  chr11    7635832        7949459     NM_198185          OVCH2
12  chr11    7635832        7949459     NR_027711         OR5E1P
13  chr11    7635832        7949459     NR_036678      LOC283299
14  chr16   14971130       15302976  NM_001270767          NTAN1
15  chr16   14971130       15302976  NM_001285445         PDXDC1
20  chr16   14971130       15302976  NM_001301064           RRN3
22  chr16   14971130       15302976     NM_006985         NPIPA1
23  chr16   14971130       15302976     NM_014287          NOMO1
24  chr16   14971130       15302976     NR_036140      MIR3179-1
25  chr16   14971130       15302976     NR_036141      MIR3180-1
26  chr16   14971130       15302976     NR_036142      MIR3180-2
27  chr16   14971130       15302976     NR_037466      MIR3180-4
28  chr16   14971130       15302976     NR_103772   LOC100288162
29  chr16   14971130       15302976     NR_106775      MIR6511B1
30  chr16   14971130       15302976     NR_106965      MIR6511B2
31  chr16   14971130       15302976     NR_106970      MIR6511A3
32  chr16   14971130       15302976     NR_107060      MIR6770-2
33  chr16   14971130       15302976     NR_123721  PKD1P6-NPIPP1
35  chr16   14971130       15302976     NR_125434   LOC100505915
36  chr16   14971130       15302976     NR_128713      MIR3670-4
37   chr2   39730052       39954151  NM_001167959       TMEM178A
39   chr2   39730052       39954151     NR_037875      LOC728730,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   97433624       97585475     NM_000110         DPYD
1    chr1   97433624       97585475     NR_046590     DPYD-AS1
2   chr16   21741226       22053913  NM_001161683         OTOA
3   chr16   21741226       22053913  NM_001164579     C16orf52
4   chr16   21741226       22053913  NM_001310148       NPIPB4
5   chr16   21741226       22053913     NM_003366       UQCRC2
8   chr16   21741226       22053913     NM_173806        PDZD9
9   chr16   21741226       22053913     NR_003370       RRN3P1
10  chr20   14746271       17020411  NM_001033087      MACROD2
11  chr20   14746271       17020411  NM_001199866       KIF16B
12  chr20   14746271       17020411     NM_003092       SNRPB2
13  chr20   14746271       17020411     NM_020157         OTOR
16  chr20   14746271       17020411     NR_037841  MACROD2-AS1
18  chr20   14746271       17020411     NR_130924    LOC613266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11     721143         822809     NM_001004         RPLP2
1   chr11     721143         822809  NM_001191060      SLC25A22
3   chr11     721143         822809  NM_001293167         PANO1
4   chr11     721143         822809  NM_001318824         PDDC1
5   chr11     721143         822809     NM_006755        TALDO1
6   chr11     721143         822809     NM_016564         CEND1
7   chr11     721143         822809     NM_020376        PNPLA2
8   chr11     721143         822809     NM_022772        EPS8L2
10  chr11     721143         822809     NM_145886         PIDD1
11  chr11     721143         822809     NR_002585       SNORA52
12  chr11     721143         822809     NR_126342     LOC171391
13  chr15   28490416       28969615  NM_001282468       GOLGA8M
14  chr15   28490416       28969615     NM_004667         HERC2
15  chr15   28490416       28969615     NR_033351       GOLGA8F
17  chr15   28490416       28969615     NR_033353       GOLGA8G
19  chr15   28490416       28969615     NR_036443       HERC2P9
20  chr15   28490416       28969615     NR_039734     MIR4509-3
22  chr16   21464908       21726506  NM_001077180        METTL9
23  chr16   21464908       21726506  NM_001161683          OTOA
25  chr16   21464908       21726506     NM_005849         IGSF6
28  chr16   21464908       21726506     NR_002594      SLC7A5P2
29  chr16   21464908       21726506     NR_027155        SMG1P3
30  chr16   21464908       21726506     NR_049833     MIR3680-2
31  chr16   21464908       21726506     NR_110930  LOC101927814
32   chr3   17292983       17413795  NM_001134381        TBC1D5
34   chr4   87963390       88961764     NM_000297          PKD2
35   chr4   87963390       88961764     NM_000582          SPP1
36   chr4   87963390       88961764  NM_001128310       SPARCL1
37   chr4   87963390       88961764  NM_001166693          AFF1
38   chr4   87963390       88961764  NM_001184694          MEPE
39   chr4   87963390       88961764  NM_001248011         NUDT9
41   chr4   87963390       88961764  NM_001292003         KLHL8
44   chr4   87963390       88961764     NM_004407          DMP1
45   chr4   87963390       88961764     NM_004967          IBSP
47   chr4   87963390       88961764     NM_014208          DSPP
48   chr4   87963390       88961764     NM_016245      HSD17B11
50   chr4   87963390       88961764     NM_178135      HSD17B13
52   chr4   87963390       88961764     NR_049891       MIR5705
53   chr4  135273961      137823881     NR_103762     LINC00613
55   chr5  119948273      120059935  NM_001300783         PRR16,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21943413       22046736  NM_001005465        OR10G3
1   chr14   21943413       22046736  NM_001163380         RAB2B
2   chr14   21943413       22046736  NM_001303523          TOX4
3   chr14   21943413       22046736     NM_019852        METTL3
5   chr14   21943413       22046736     NR_111966         SALL2
7   chr16   21368951       21593869     NM_130464        NPIPB3
8   chr16   21368951       21593869     NR_002594      SLC7A5P2
9   chr16   21368951       21593869     NR_024456  LOC100190986
10  chr16   21368951       21593869     NR_027155        SMG1P3
11  chr16   21368951       21593869     NR_045011       SNX29P1
12  chr16   21368951       21593869     NR_049833     MIR3680-2
13  chr17   56096876       56533373     NM_000250           MPO
14  chr17   56096876       56533373     NM_000502           EPX
15  chr17   56096876       56533373  NM_001004707         OR4D2
16  chr17   56096876       56533373  NM_001080439          HSF5
17  chr17   56096876       56533373  NM_001165927          MKS1
18  chr17   56096876       56533373  NM_001305544         RNF43
21  chr17   56096876       56533373     NM_003168       SUPT4H1
22  chr17   56096876       56533373     NM_004758       TSPOAP1
23  chr17   56096876       56533373     NM_012374         OR4D1
24  chr17   56096876       56533373     NM_080677        DYNLL2
25  chr17   56096876       56533373     NR_002307        MSX2P1
26  chr17   56096876       56533373     NR_027647           LPO
27  chr17   56096876       56533373     NR_029683        MIR142
28  chr17   56096876       56533373     NR_038410   TSPOAP1-AS1
32  chr17   56096876       56533373     NR_039889       MIR4736
33  chr17   56096876       56533373     NR_110809  LOC101927666
34   chr6   65581908       65723487  NM_001142800           EYS,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11   59353613       59697113  NM_001005324         OR10V1
1   chr11   59353613       59697113     NM_001062           TCN1
2   chr11   59353613       59697113  NM_001178040           STX3
3   chr11   59353613       59697113     NM_002556           OSBP
4   chr11   59353613       59697113     NM_005142            GIF
5   chr11   59353613       59697113     NM_017840         MRPL16
6   chr11   59353613       59697113     NM_152716          PATL1
7   chr11   59353613       59697113     NR_036120        MIR3162
8   chr11   59353613       59697113     NR_045005        OR10V2P
9   chr16   14859342       15705272  NM_001128423         MPV17L
10  chr16   14859342       15705272  NM_001142469       C16orf45
11  chr16   14859342       15705272  NM_001184998       KIAA0430
12  chr16   14859342       15705272  NM_001270767          NTAN1
13  chr16   14859342       15705272  NM_001277325         NPIPA5
14  chr16   14859342       15705272  NM_001285445         PDXDC1
19  chr16   14859342       15705272  NM_001301064           RRN3
21  chr16   14859342       15705272     NM_006985         NPIPA1
22  chr16   14859342       15705272     NM_014287          NOMO1
24  chr16   14859342       15705272     NR_023387        ABCC6P2
25  chr16   14859342       15705272     NR_036140      MIR3179-1
26  chr16   14859342       15705272     NR_036141      MIR3180-1
27  chr16   14859342       15705272     NR_036142      MIR3180-2
28  chr16   14859342       15705272     NR_037466      MIR3180-4
29  chr16   14859342       15705272     NR_103772   LOC100288162
30  chr16   14859342       15705272     NR_106761        MIR6506
31  chr16   14859342       15705272     NR_106775      MIR6511B1
32  chr16   14859342       15705272     NR_106965      MIR6511B2
33  chr16   14859342       15705272     NR_106970      MIR6511A3
34  chr16   14859342       15705272     NR_107060      MIR6770-2
35  chr16   14859342       15705272     NR_123721  PKD1P6-NPIPP1
37  chr16   14859342       15705272     NR_125434   LOC100505915
38  chr16   14859342       15705272     NR_128713      MIR3670-4
39  chr22   18970997       19086682  NM_001184781          DGCR2
40  chr22   18970997       19086682     NR_002733          DGCR5
41  chr22   18970997       19086682     NR_024157         DGCR11
42  chr22   18970997       19086682     NR_024159          DGCR9
43  chr22   18970997       19086682     NR_026651         DGCR10
45   chr9   80114373       80548996     NM_002072           GNAQ
46   chr9   80114373       80548996     NM_004297          GNA14
47   chr9   80114373       80548996     NR_121184      GNA14-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   68014715       68316808  NM_001127384     CTNNA3
2   chr14   21837368       21960737  NM_001163380      RAB2B
3   chr14   21837368       21960737  NM_001170629       CHD8
4   chr14   21837368       21960737  NM_001303523       TOX4
5   chr14   21837368       21960737     NM_007192    SUPT16H
8   chr14   21837368       21960737     NR_002916     SNORD8
9   chr14   21837368       21960737     NR_003029     SNORD9
10  chr14   21855192       22096570  NM_001005465     OR10G3
11  chr14   21855192       22096570  NM_001163380      RAB2B
12  chr14   21855192       22096570  NM_001170629       CHD8
13  chr14   21855192       22096570  NM_001303523       TOX4
14  chr14   21855192       22096570     NM_019852     METTL3
17  chr14   21855192       22096570     NR_002916     SNORD8
18  chr14   21855192       22096570     NR_003029     SNORD9
19  chr14   21855192       22096570     NR_111966      SALL2
21   chr4   93225967       93354368     NM_001510      GRID2
22   chr5   17614957       18239518     NR_134286  LOC646241
24   chr7  110655758      110855208  NM_001099658      LRRN3
25   chr7  110655758      110855208  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21589096       21763557  NM_001004731        OR5AU1
1   chr14   21589096       21763557     NM_020366       RPGRIP1
2   chr14   21589096       21763557     NM_031314        HNRNPC
3   chr14   21589096       21763557     NR_038970     LINC00641
5    chr2  186488569      186697493     NM_173651         FSIP2
6    chr2  186488569      186697493     NR_110214  LOC101927196
9    chr2  186488569      186697493     NR_144453     FSIP2-AS1
11   chr7   64206691       64402251  NM_001160183        ZNF138
12   chr7   64206691       64402251     NM_021148        ZNF273
14   chr7  111254644      111411299     NM_014705         DOCK4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12760175       12929202  NM_001013631      HNRNPCL1
1    chr1   12760175       12929202  NM_001080830      PRAMEF12
2    chr1   12760175       12929202  NM_001103170       AADACL3
3    chr1   12760175       12929202  NM_001146181      HNRNPCL3
4    chr1   12760175       12929202  NM_001146344      PRAMEF11
5    chr1   12760175       12929202  NM_001294139       PRAMEF1
6    chr1   12760175       12929202  NM_001302551      HNRNPCL4
8    chr1   12760175       12929202     NM_023014       PRAMEF2
9    chr1   12760175       12929202     NM_152290      C1orf158
10  chr11   37855697       37970072     NR_135110  LOC105376633
11  chr11  122043622      122155977     NR_024430      MIR100HG
16  chr14   47923062       48081026  NM_001113498         MDGA2
17  chr16   18091307       18560984  NM_001004060         NOMO2
18  chr16   18091307       18560984  NM_001282511        NPIPA8
19  chr16   18091307       18560984     NR_036140     MIR3179-1
20  chr16   18091307       18560984     NR_036142     MIR3180-2
21  chr16   18091307       18560984     NR_036144     MIR3180-3
22  chr16   18091307       18560984     NR_037442     MIR3670-1
23  chr16   18091307       18560984     NR_103772  LOC100288162
24  chr16   18091307       18560984     NR_106971     MIR6511A4
25  chr16   18091307       18560984     NR_107060     MIR6770-2
26   chr4  136821931      138143286     NR_103763     LINC00613
27   chr4  136821931      138143286     NR_134640     LOC729307
28   chr6  162672732      162876124     NM_013988         PARK2, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0    chr1  237510346      237639015     NM_001035               RYR2
1    chr1  237510346      237639015     NR_039626            MIR4428
2   chr20   14909693       16217652  NM_001033087            MACROD2
4   chr20   14909693       16217652     NR_037841        MACROD2-AS1
6   chr20   14909693       16217652     NR_130924          LOC613266
8   chr22   17149200       17597541  NM_001037814               GAB4
9   chr22   17149200       17597541  NM_001163079              CECR6
10  chr22   17149200       17597541  NM_001289905             IL17RA
12  chr22   17149200       17597541     NM_175878               XKR3
13  chr22   17149200       17597541     NR_003607            HSFY1P1
14  chr22   17149200       17597541     NR_015352              CECR7
15  chr22   17149200       17597541     NR_040115  ANKRD62P1-PARP4P3
16  chr22   17149200       17597541     NR_134584       LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143690503      143804391  NM_001123068       PPIAL4G
1    chr1  143690503      143804391     NR_104014     LINC01138
2    chr1  143690503      143804391     NR_111930  LOC100132057
3   chr10   68363090       68621274  NM_001127384        CTNNA3
5   chr11  131985591      132216483  NM_001048209           NTM
8   chr11  131985591      132216483     NR_046820        NTM-IT
9   chr20   14664656       14865178     NM_080676       MACROD2
10  chr20   14664656       14865178     NR_037841   MACROD2-AS1
11   chr6  162743667      162852750     NM_013988         PARK2
12   chr7   64122242       64234597  NM_001282360        ZNF107
14   chr7   64122242       64234597     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   58832271       59533628     NM_000236          LIPC
1   chr15   58832271       59533628  NM_001040450        FAM63B
3   chr15   58832271       59533628     NM_001110        ADAM10
4   chr15   58832271       59533628  NM_001270530        RNF111
6   chr15   58832271       59533628     NM_004701         CCNB2
7   chr15   58832271       59533628     NM_004998         MYO1E
9   chr15   58832271       59533628     NM_033195       LDHAL6B
10  chr15   58832271       59533628     NR_031750       MIR2116
11  chr15   58832271       59533628     NR_073415     HSP90AB4P
12  chr15   58832271       59533628     NR_135043          SLTM
13  chr15   58832271       59533628     NR_135474  LOC101928725
14  chr15   85737760       86031661  NM_001310153      GOLGA6L3
15  chr15   85737760       86031661     NM_006738        AKAP13
16  chr15   85737760       86031661     NR_049748     LOC642423
17  chr15   85737760       86031661     NR_106993       MIR7706
18  chr20   14846856       14977782     NM_080676       MACROD2
19  chr20   14846856       14977782     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   97402646       97546253     NM_000110         DPYD
1   chr14   21874200       21993010  NM_001163380        RAB2B
2   chr14   21874200       21993010  NM_001170629         CHD8
3   chr14   21874200       21993010  NM_001303523         TOX4
4   chr14   21874200       21993010     NM_019852       METTL3
7   chr14   21874200       21993010     NR_111966        SALL2
9   chr16   29726828       30029569  NM_001083613      TMEM219
10  chr16   29726828       30029569  NM_001114099       SEZ6L2
11  chr16   29726828       30029569  NM_001256269        KIF22
13  chr16   29726828       30029569  NM_001256443        PRRT2
14  chr16   29726828       30029569  NM_001276275          MAZ
15  chr16   29726828       30029569  NM_001282062        DOC2A
18  chr16   29726828       30029569  NM_001286585        CDIPT
19  chr16   29726828       30029569  NM_001293204          MVP
20  chr16   29726828       30029569  NM_001304562       INO80E
23  chr16   29726828       30029569     NM_003609       HIRIP3
24  chr16   29726828       30029569     NM_004783        TAOK2
27  chr16   29726828       30029569     NM_024516        PAGR1
28  chr16   29726828       30029569     NM_152338         ZG16
29  chr16   29726828       30029569     NM_175900     C16orf54
30  chr16   29726828       30029569     NM_178863       KCTD13
31  chr16   29726828       30029569     NM_181718       ASPHD1
32  chr16   29726828       30029569     NR_015396    CDIPT-AS1
35   chr2   52192659       52302628     NR_135237    LOC730100
36   chr2  110215066      110327350  NM_001099289       SH3RF3
37   chr2  110215066      110327350  NM_001321504       SEPT10
39  chr20   14645190       15056932     NM_080676      MACROD2
40  chr20   14645190       15056932     NR_037841  MACROD2-AS1
42  chr21   17837134       18070333     NR_027790     MIR99AHG
44  chr21   17837134       18070333     NR_029480     MIRLET7C
45  chr21   17837134       18070333     NR_029514       MIR99A
46  chr21   17837134       18070333     NR_029694     MIR125B2
55   chr5  161078013      161274671     NM_000806       GABRA1
56   chr5  161078013      161274671     NM_000811       GABRA6
57   chr9   20817548       21286859  NM_001010915        HACD4
59   chr9   20817548       21286859     NM_002171       IFNA10
60   chr9   20817548       21286859     NM_002172       IFNA14
61   chr9   20817548       21286859     NM_002173       IFNA16
62   chr9   20817548       21286859     NM_002175       IFNA21
63   chr9   20817548       21286859     NM_002176        IFNB1
64   chr9   20817548       21286859     NM_002177        IFNW1
65   chr9   20817548       21286859     NM_017794        FOCAD
66   chr9   20817548       21286859     NM_021057        IFNA7
67   chr9   20817548       21286859     NM_021068        IFNA4
68   chr9   20817548       21286859     NM_021268       IFNA17
69   chr9   20817548       21286859     NR_036676      IFNA22P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145346708      145491078  NM_001039888      ANKRD34A
1    chr1  145346708      145491078  NM_001277444         NBPF9
2    chr1  145346708      145491078  NM_001278267        NBPF20
3    chr1  145346708      145491078  NM_001302371        NBPF10
4    chr1  145346708      145491078  NM_001313972         TXNIP
6    chr1  145346708      145491078     NM_032305       POLR3GL
7    chr1  145346708      145491078     NM_145277          HFE2
8    chr1  145346708      145491078     NM_153713         LIX1L
9    chr1  145346708      145491078     NR_104217       NBPF25P
10   chr1  145346708      145491078     NR_125967  LOC101928979
11  chr12   85418854       85520899  NM_001079910        LRRIQ1
12  chr12   85418854       85520899  NM_001100917       TSPAN19
13   chr2   97458548       98171150  NM_001122646       FAM178B
14   chr2   97458548       98171150  NM_001164315       ANKRD36
16   chr2   97458548       98171150  NM_001320849        FAHD2B
17   chr2   97458548       98171150     NM_016466       ANKRD39
19   chr2   97458548       98171150     NM_017623         CNNM3
20   chr2   97458548       98171150     NM_017789        SEMA4C
21   chr2   97458548       98171150     NM_020184         CNNM4
22   chr2   97458548       98171150     NM_025190      ANKRD36B
23   chr2   97458548       98171150     NM_144994       ANKRD23
25   chr2   97458548       98171150     NR_036074       MIR3127
26   chr2   97458548       98171150     NR_103732  LOC100506076
30   chr2   97458548       98171150     NR_110209  LOC101927053
31   chr2   97458548       98171150     NR_130704  LOC100506123
33   chr2  153039405      153335220     NM_052905         FMNL2
34   chr2  186303000      186998455     NM_173651         FSIP2
35   chr2  186303000      186998455     NR_110214  LOC101927196
38   chr2  186303000      186998455     NR_110218     LINC01473
39   chr2  186303000      186998455     NR_144453     FSIP2-AS1
41  chr20   14640937       14906486     NM_080676       MACROD2
42  chr20   14640937       14906486     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12814336       12927126  NM_001013631      HNRNPCL1
1    chr1   12814336       12927126  NM_001080830      PRAMEF12
2    chr1   12814336       12927126  NM_001146181      HNRNPCL3
3    chr1   12814336       12927126  NM_001146344      PRAMEF11
4    chr1   12814336       12927126  NM_001294139       PRAMEF1
5    chr1   12814336       12927126  NM_001302551      HNRNPCL4
7    chr1   12814336       12927126     NM_023014       PRAMEF2
8    chr1   12814336       12927126     NM_152290      C1orf158
9    chr1  143376569      144254024  NM_001123068       PPIAL4G
10   chr1  143376569      144254024  NM_001278267        NBPF20
11   chr1  143376569      144254024  NM_001287385        FAM72C
12   chr1  143376569      144254024  NM_001345942        FAM72D
16   chr1  143376569      144254024     NR_104014     LINC01138
17   chr1  143376569      144254024     NR_106967       MIR6077
18   chr1  143376569      144254024     NR_111930  LOC100132057
20  chr20   14536436       14667082     NM_080676       MACROD2
21  chr20   14536436       14667082     NR_104193   MACROD2-IT1
22  chr22   20148017       20317293     NM_023004         RTN4R
23  chr22   20148017       20317293     NM_033257        DGCR6L
24  chr22   20148017       20317293     NR_026919     LINC00896
25  chr22   20148017       20317293     NR_031618       MIR1286
26  chr22   20148017       20317293     NR_038460     LOC284865
27   chr9   41873704       41991720     NR_003670        FGF7P3
28   chr9   41873704       41991720     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  102717717      102856615     NM_002426         MMP12
1   chr11  102717717      102856615     NM_002427         MMP13
2   chr14   21612701       21868874  NM_001004731        OR5AU1
3   chr14   21612701       21868874  NM_001170629          CHD8
4   chr14   21612701       21868874     NM_007192       SUPT16H
5   chr14   21612701       21868874     NM_020366       RPGRIP1
7   chr14   21612701       21868874     NM_031314        HNRNPC
8   chr14   21612701       21868874     NR_002916        SNORD8
9   chr14   21612701       21868874     NR_003029        SNORD9
10  chr14   21612701       21868874     NR_038970     LINC00641
12   chr2   35654607       35777949     NR_039629      MIR548AD
13   chr3  131337361      131984271  NM_001289112         CPNE4
16   chr3  131337361      131984271     NR_049890       MIR5704
17   chr9   41851427       42148158     NR_003670        FGF7P3
18   chr9   41851427       42148158     NR_015363         GLIDR
21   chr9   41851427       42148158     NR_126048  LOC102724238
22   chr9   41851427       42148158     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   14676625       15219915  NM_001134477           PARN
1   chr16   14676625       15219915  NM_001270767          NTAN1
2   chr16   14676625       15219915  NM_001277323         NPIPA3
4   chr16   14676625       15219915  NM_001277324         NPIPA2
6   chr16   14676625       15219915  NM_001285445         PDXDC1
11  chr16   14676625       15219915  NM_001301064           RRN3
13  chr16   14676625       15219915     NM_006985         NPIPA1
14  chr16   14676625       15219915     NM_014287          NOMO1
15  chr16   14676625       15219915     NM_016561           BFAR
16  chr16   14676625       15219915     NR_023387        ABCC6P2
17  chr16   14676625       15219915     NR_036140      MIR3179-1
18  chr16   14676625       15219915     NR_036141      MIR3180-1
19  chr16   14676625       15219915     NR_036142      MIR3180-2
20  chr16   14676625       15219915     NR_103772   LOC100288162
21  chr16   14676625       15219915     NR_106970      MIR6511A3
22  chr16   14676625       15219915     NR_107060      MIR6770-2
23  chr16   14676625       15219915     NR_123721  PKD1P6-NPIPP1
25  chr16   14676625       15219915     NR_125434   LOC100505915
26  chr16   14676625       15219915     NR_128713      MIR3670-4
27  chr16   14676625       15219915     NR_133651        PLA2G10,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    6672003        6837777  NM_001004489     OR2AG1
1   chr11    6672003        6837777  NM_001004490     OR2AG2
2   chr11    6672003        6837777     NM_003696      OR6A2
3   chr11    6672003        6837777     NM_003737      DCHS1
4   chr11    6672003        6837777     NM_022061     MRPL17
5   chr11    6672003        6837777     NR_003945     GVINP1
6   chr14   21753251       22020242  NM_001163380      RAB2B
7   chr14   21753251       22020242  NM_001170629       CHD8
8   chr14   21753251       22020242  NM_001303523       TOX4
9   chr14   21753251       22020242     NM_007192    SUPT16H
10  chr14   21753251       22020242     NM_019852     METTL3
11  chr14   21753251       22020242     NM_020366    RPGRIP1
14  chr14   21753251       22020242     NR_002916     SNORD8
15  chr14   21753251       22020242     NR_003029     SNORD9
16  chr14   21753251       22020242     NR_111966      SALL2
18  chr14   38168851       38475039  NM_001310135       TTC6
19  chr14   38168851       38475039     NR_135286  LINC00517
20  chr18   63510382       63651423  NM_001317214       CDH7
23   chr7   64202449       64469390  NM_001007253     ERV3-1
24   chr7   64202449       64469390  NM_001160183     ZNF138
25   chr7   64202449       64469390     NM_015852     ZNF117
26   chr7   64202449       64469390     NM_021148     ZNF273,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143665443      143921616  NM_001123068       PPIAL4G
1    chr1  143665443      143921616  NM_001287385        FAM72C
2    chr1  143665443      143921616  NM_001345942        FAM72D
6    chr1  143665443      143921616     NR_104014     LINC01138
7    chr1  143665443      143921616     NR_106967       MIR6077
8    chr1  143665443      143921616     NR_111930  LOC100132057
10  chr10   67943275       69464704  NM_001127384        CTNNA3
13  chr10   67943275       69464704     NM_178011        LRRTM3
14  chr10   67943275       69464704     NR_106973       MIR7151
16  chr10   67943275       69464704     NR_111911  LOC101928961
17  chr16   21428546       21540563     NM_130464        NPIPB3
18  chr16   21428546       21540563     NR_002594      SLC7A5P2
19  chr16   21428546       21540563     NR_024456  LOC100190986
20  chr16   21428546       21540563     NR_027155        SMG1P3
21  chr16   21428546       21540563     NR_049833     MIR3680-2
22   chr2   31427656       31698851     NM_000379           XDH
23   chr2   31427656       31698851  NM_001145122        CAPN14
25   chr2   31427656       31698851     NM_014600          EHD3,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr10  117354675      117504559     NM_207303         ATRNL1
1   chr15   20993864       21167033  NM_001277303         POTEB2
2   chr15   20993864       21167033     NM_207355         POTEB3
3   chr15   20993864       21167033     NR_028506          NF1P2
4   chr15   20993864       21167033     NR_036062      MIR3118-2
5   chr15   20993864       21167033     NR_040094      LINC01193
6   chr15   20993864       21167033     NR_049895      MIR5701-2
8   chr15   82794657       83043009  NM_001164465      GOLGA6L10
9   chr15   82794657       83043009  NM_001291420       GOLGA6L9
11  chr15   82794657       83043009     NR_004847       UBE2Q2P2
12  chr15   82794657       83043009     NR_026811      GOLGA2P10
14  chr15   82794657       83043009     NR_045529      ADAMTS7P1
15  chr15   82794657       83043009     NR_102747      LOC727751
16  chr15   82794657       83043009     NR_111943          RPS17
18  chr15   82794657       83043009     NR_111962     GOLGA6L17P
19  chr15   82794657       83043009     NR_120378   LOC102724034
20  chr16   12304090       15220551  NM_001099455         CPPED1
21  chr16   12304090       15220551  NM_001134477           PARN
22  chr16   12304090       15220551  NM_001145204         SHISA9
24  chr16   12304090       15220551  NM_001270767          NTAN1
25  chr16   12304090       15220551  NM_001277323         NPIPA3
27  chr16   12304090       15220551  NM_001277324         NPIPA2
29  chr16   12304090       15220551  NM_001285445         PDXDC1
34  chr16   12304090       15220551  NM_001301064           RRN3
35  chr16   12304090       15220551  NM_001308142           MKL2
37  chr16   12304090       15220551     NM_005236          ERCC4
38  chr16   12304090       15220551     NM_006985         NPIPA1
40  chr16   12304090       15220551     NM_014287          NOMO1
41  chr16   12304090       15220551     NM_016561           BFAR
42  chr16   12304090       15220551     NM_032167          SNX29
43  chr16   12304090       15220551     NR_023387        ABCC6P2
44  chr16   12304090       15220551     NR_029854        MIR365A
45  chr16   12304090       15220551     NR_030177        MIR193B
46  chr16   12304090       15220551     NR_036140      MIR3179-1
47  chr16   12304090       15220551     NR_036141      MIR3180-1
48  chr16   12304090       15220551     NR_036142      MIR3180-2
49  chr16   12304090       15220551     NR_039869        MIR4718
50  chr16   12304090       15220551     NR_103772   LOC100288162
51  chr16   12304090       15220551     NR_106970      MIR6511A3
52  chr16   12304090       15220551     NR_107060      MIR6770-2
53  chr16   12304090       15220551     NR_110909   LOC101927311
54  chr16   12304090       15220551     NR_110915   LOC101927348
55  chr16   12304090       15220551     NR_123721  PKD1P6-NPIPP1
57  chr16   12304090       15220551     NR_125434   LOC100505915
58  chr16   12304090       15220551     NR_128713      MIR3670-4
59  chr16   12304090       15220551     NR_131191   LOC105447648
60  chr16   12304090       15220551     NR_132983      MIR193BHG
62  chr16   12304090       15220551     NR_133651        PLA2G10
63   chr7   83036881       83462888  NM_001178129         SEMA3E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17266896       18129553  NM_001037814          GAB4
1   chr22   17266896       18129553  NM_001163079         CECR6
2   chr22   17266896       18129553  NM_001282227         CECR1
4   chr22   17266896       18129553  NM_001288707  LOC101929372
5   chr22   17266896       18129553  NM_001289905        IL17RA
6   chr22   17266896       18129553  NM_001290046         CECR2
8   chr22   17266896       18129553  NM_001303484      SLC25A18
9   chr22   17266896       18129553     NM_001696      ATP6V1E1
10  chr22   17266896       18129553     NM_015367       BCL2L13
11  chr22   17266896       18129553     NM_017829         CECR5
14  chr22   17266896       18129553     NM_175878          XKR3
16  chr22   17266896       18129553     NR_003607       HSFY1P1
17  chr22   17266896       18129553     NR_015352         CECR7
18  chr22   17266896       18129553     NR_024482     CECR5-AS1
19  chr22   17266896       18129553     NR_038398         CECR3
20  chr22   17266896       18129553     NR_103793  LOC100996342
21   chr4   98395140       98519900     NM_174952         STPG2
22   chr4   98395140       98519900     NR_102713     STPG2-AS1
23   chr8    7826086        8209612  NM_001080826         PRAG1
24   chr8    7826086        8209612  NM_001256871       USP17L3
25   chr8    7826086        8209612  NM_001256872       USP17L8
26   chr8    7826086        8209612     NR_003668    DEFB109P1B
27   chr8    7826086        8209612     NR_024361      FAM86B3P
30   chr8    7826086        8209612     NR_027424        FAM66E
31   chr8    7826086        8209612     NR_031689      MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  133997305      134107350  NM_001105521       JAKMIP3
1   chr10  133997305      134107350  NM_001318878        STK32C
3   chr10  133997305      134107350     NM_006426        DPYSL4
6   chr14   21750142       21874782  NM_001170629          CHD8
7   chr14   21750142       21874782     NM_007192       SUPT16H
8   chr14   21750142       21874782     NM_020366       RPGRIP1
10  chr14   21750142       21874782     NR_002916        SNORD8
11  chr14   21750142       21874782     NR_003029        SNORD9
12   chr4  165962961      166074546  NM_001100389       TMEM192
13   chr9    7821660       10316589     NM_002839         PTPRD
15   chr9    7821660       10316589     NR_121599     PTPRD-AS1
16   chr9    7821660       10316589     NR_135135  LOC105375972,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   89128937       89262673  NM_001143837      NOX4
6   chr14   21827759       21962384  NM_001163380     RAB2B
7   chr14   21827759       21962384  NM_001170629      CHD8
8   chr14   21827759       21962384  NM_001303523      TOX4
9   chr14   21827759       21962384     NM_007192   SUPT16H
12  chr14   21827759       21962384     NR_002916    SNORD8
13  chr14   21827759       21962384     NR_003029    SNORD9
14  chr16    8599956        8723941  NM_001146336   TMEM114
16  chr16    8599956        8723941     NM_024109   METTL22,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17172806       17912927  NM_001037814          GAB4
1   chr22   17172806       17912927  NM_001163079         CECR6
2   chr22   17172806       17912927  NM_001282227         CECR1
4   chr22   17172806       17912927  NM_001289905        IL17RA
5   chr22   17172806       17912927  NM_001290046         CECR2
6   chr22   17172806       17912927     NM_017829         CECR5
9   chr22   17172806       17912927     NM_175878          XKR3
11  chr22   17172806       17912927     NR_003607       HSFY1P1
12  chr22   17172806       17912927     NR_015352         CECR7
13  chr22   17172806       17912927     NR_024482     CECR5-AS1
14  chr22   17172806       17912927     NR_038398         CECR3
15  chr22   17172806       17912927     NR_103793  LOC100996342
16  chr22   17172806       17912927     NR_134584  LOC101929350
17   chr7   64073190       64289265  NM_001160183        ZNF138
18   chr7   64073190       64289265  NM_001282360        ZNF107
20   chr7   64073190       64289265     NR_077227  LOC100128885
22   chr7   64073190       64289265     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21837063       22194417  NM_001001912     OR4E2
1   chr14   21837063       22194417  NM_001005465    OR10G3
2   chr14   21837063       22194417  NM_001005466    OR10G2
3   chr14   21837063       22194417  NM_001163380     RAB2B
4   chr14   21837063       22194417  NM_001170629      CHD8
5   chr14   21837063       22194417  NM_001303523      TOX4
6   chr14   21837063       22194417  NM_001317107     OR4E1
7   chr14   21837063       22194417     NM_007192   SUPT16H
8   chr14   21837063       22194417     NM_019852    METTL3
11  chr14   21837063       22194417     NR_002916    SNORD8
12  chr14   21837063       22194417     NR_003029    SNORD9
13  chr14   21837063       22194417     NR_111966     SALL2
15  chr16   10567030       10690977  NM_001256160   ATF7IP2
16  chr16   10567030       10690977     NM_001424      EMP2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   40702319       41015006  NM_001258419     LRRC4C
1   chr11   60310127       60466066  NM_001278320     MS4A13
2   chr11   60310127       60466066     NR_026946  LINC00301
3   chr15   52984120       53117618     NM_004498    ONECUT1
5   chr16   29540637       29687448  NM_001030288        SPN
7   chr16   29540637       29687448     NR_049833  MIR3680-2
8   chr16   29540637       29687448     NR_135305     SMG1P2
10   chr2   47070873       47321609  NM_001163561    C2orf61
11   chr2   47070873       47321609  NM_001171506      MCFD2
14   chr2   47070873       47321609  NM_001288951      TTC7A
16   chr2   47070873       47321609     NR_024452  LINC01119
17   chr2   51177466       51370919  NM_001330079      NRXN1
20   chr2   51177466       51370919     NR_135237  LOC730100,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18409458       18512383  NM_001004060         NOMO2
1   chr16   18409458       18512383  NM_001282511        NPIPA8
2   chr16   18409458       18512383     NR_036140     MIR3179-1
3   chr16   18409458       18512383     NR_036142     MIR3180-2
4   chr16   18409458       18512383     NR_036144     MIR3180-3
5   chr16   18409458       18512383     NR_037442     MIR3670-1
6   chr16   18409458       18512383     NR_103772  LOC100288162
7   chr16   18409458       18512383     NR_106971     MIR6511A4
8   chr16   18409458       18512383     NR_107060     MIR6770-2
9   chr17   21896623       22042410  NM_001190452      MTRNR2L1
10  chr17   21896623       22042410     NR_027084      FLJ36000
11  chr18   14696632       18223722  NM_001145029      ANKRD30B
12  chr18   14696632       18223722     NR_027417     LOC644669
13  chr18   14696632       18223722     NR_036153     MIR3156-2
14  chr18   14696632       18223722     NR_104164     LINC01443
15  chr18   14696632       18223722     NR_110783     LINC01444
16  chr19   47855130       48000323  NM_001009813         MEIS3
17  chr19   47855130       48000323  NM_001291296          KPTN
20  chr19   47855130       48000323     NM_014681         DHX34
21  chr19   47855130       48000323     NM_015063        SLC8A2
22  chr19   47855130       48000323     NR_038452      NAPA-AS1
23  chr19   47855130       48000323     NR_038457          NAPA
24   chr2  110146177      110270162  NM_001099289        SH3RF3
25   chr2  214210645      214331736     NM_024532        SPAG16,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   14806012       15215115  NM_001270767          NTAN1
1   chr16   14806012       15215115  NM_001277323         NPIPA3
3   chr16   14806012       15215115  NM_001277324         NPIPA2
5   chr16   14806012       15215115  NM_001285445         PDXDC1
10  chr16   14806012       15215115  NM_001301064           RRN3
12  chr16   14806012       15215115     NM_006985         NPIPA1
13  chr16   14806012       15215115     NM_014287          NOMO1
14  chr16   14806012       15215115     NR_023387        ABCC6P2
15  chr16   14806012       15215115     NR_036140      MIR3179-1
16  chr16   14806012       15215115     NR_036141      MIR3180-1
17  chr16   14806012       15215115     NR_036142      MIR3180-2
18  chr16   14806012       15215115     NR_103772   LOC100288162
19  chr16   14806012       15215115     NR_106970      MIR6511A3
20  chr16   14806012       15215115     NR_107060      MIR6770-2
21  chr16   14806012       15215115     NR_123721  PKD1P6-NPIPP1
23  chr16   14806012       15215115     NR_125434   LOC100505915
24  chr16   14806012       15215115     NR_128713      MIR3670-4
25   chr9   41511675       41922100     NR_003528        ZNF658B
26   chr9   41511675       41922100     NR_026803        FAM74A1,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0   chr1  242678418      242795109  NM_152666          PLD5
1  chr16   29516892       29625291  NR_049833     MIR3680-2
2  chr16   29516892       29625291  NR_135305        SMG1P2
4   chr2  186519255      187114722  NM_173651         FSIP2
5   chr2  186519255      187114722  NR_110214  LOC101927196
8   chr2  186519255      187114722  NR_110218     LINC01473
9   chr2  186519255      187114722  NR_144453     FSIP2-AS1,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr1  143123577      143404446  NR_110761  LOC102723769
1  chr6  161725010      161826468  NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21866701       22154418  NM_001001912     OR4E2
1   chr14   21866701       22154418  NM_001005465    OR10G3
2   chr14   21866701       22154418  NM_001005466    OR10G2
3   chr14   21866701       22154418  NM_001163380     RAB2B
4   chr14   21866701       22154418  NM_001170629      CHD8
5   chr14   21866701       22154418  NM_001303523      TOX4
6   chr14   21866701       22154418  NM_001317107     OR4E1
7   chr14   21866701       22154418     NM_019852    METTL3
10  chr14   21866701       22154418     NR_111966     SALL2
12  chr16   61786282       63129391     NM_001796      CDH8
13   chr4   71369803       71541413  NM_001286731      AMTN
14   chr4   71369803       71541413     NM_016519      AMBN
15   chr4   71369803       71541413     NM_031889      ENAM
16   chr4   71369803       71541413     NM_144646    JCHAIN
17   chr4   93312181       93421913     NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21892775       22338462  NM_001001912     OR4E2
1   chr14   21892775       22338462  NM_001005465    OR10G3
2   chr14   21892775       22338462  NM_001005466    OR10G2
3   chr14   21892775       22338462  NM_001163380     RAB2B
4   chr14   21892775       22338462  NM_001170629      CHD8
5   chr14   21892775       22338462  NM_001303523      TOX4
6   chr14   21892775       22338462  NM_001317107     OR4E1
7   chr14   21892775       22338462     NM_019852    METTL3
10  chr14   21892775       22338462     NR_111966     SALL2
12   chr5   59631510       59787999  NM_001165899     PDE4D
13   chr5   59631510       59787999     NR_024617     PART1
16   chr7  110683057      110861622  NM_001099658     LRRN3
17   chr7  110683057      110861622  NM_001244606    IMMP2L
19   chr7  117502335      117668694     NM_033427   CTTNBP2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   54210269       54499604     NR_120641  LINC01468
2   chr11   31218020       31321242     NM_181807      DCDC1
3   chr12   19550301       19680308  NM_001267043      AEBP2
5   chr14   21857879       22014407  NM_001163380      RAB2B
6   chr14   21857879       22014407  NM_001170629       CHD8
7   chr14   21857879       22014407  NM_001303523       TOX4
8   chr14   21857879       22014407     NM_019852     METTL3
11  chr14   21857879       22014407     NR_002916     SNORD8
12  chr14   21857879       22014407     NR_003029     SNORD9
13  chr14   21857879       22014407     NR_111966      SALL2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   16332387       16512371  NM_001170798   SLC15A5
1   chr12   16332387       16512371  NM_001267598     MGST1
6   chr14   21760518       21979639  NM_001163380     RAB2B
7   chr14   21760518       21979639  NM_001170629      CHD8
8   chr14   21760518       21979639  NM_001303523      TOX4
9   chr14   21760518       21979639     NM_007192   SUPT16H
10  chr14   21760518       21979639     NM_019852    METTL3
11  chr14   21760518       21979639     NM_020366   RPGRIP1
14  chr14   21760518       21979639     NR_002916    SNORD8
15  chr14   21760518       21979639     NR_003029    SNORD9
16  chr15   36185697       36703916     NR_039735   MIR4510
17   chr2  110149350      110435518  NM_001099289    SH3RF3
18   chr2  110149350      110435518  NM_001321504    SEPT10
20   chr2  110149350      110435518     NM_023016    SOWAHC,      chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr14   21837828       24646254     NM_000257           MYH7
1    chr14   21837828       24646254  NM_001001912          OR4E2
2    chr14   21837828       24646254  NM_001005465         OR10G3
3    chr14   21837828       24646254  NM_001005466         OR10G2
4    chr14   21837828       24646254  NM_001018073           PCK2
5    chr14   21837828       24646254  NM_001039619          PRMT5
6    chr14   21837828       24646254  NM_001042635           NGDN
7    chr14   21837828       24646254  NM_001048205           REC8
8    chr14   21837828       24646254  NM_001099780         PSMB11
9    chr14   21837828       24646254  NM_001126105         SLC7A7
11   chr14   21837828       24646254  NM_001130706       C14orf93
12   chr14   21837828       24646254  NM_001130725          PSMB5
14   chr14   21837828       24646254  NM_001146028           JPH4
15   chr14   21837828       24646254  NM_001163380          RAB2B
16   chr14   21837828       24646254  NM_001163484         DCAF11
17   chr14   21837828       24646254  NM_001164815          ACIN1
19   chr14   21837828       24646254  NM_001170629           CHD8
20   chr14   21837828       24646254  NM_001193635        DHRS4L2
22   chr14   21837828       24646254  NM_001199839         BCL2L2
23   chr14   21837828       24646254  NM_001199864  BCL2L2-PABPN1
24   chr14   21837828       24646254  NM_001256323          THTPA
25   chr14   21837828       24646254  NM_001267036         SLC7A8
27   chr14   21837828       24646254  NM_001276318        PPP1R3E
28   chr14   21837828       24646254  NM_001277174            EFS
29   chr14   21837828       24646254  NM_001280558          CPNE6
30   chr14   21837828       24646254  NM_001281529          PSME1
31   chr14   21837828       24646254  NM_001282322        RNF212B
32   chr14   21837828       24646254  NM_001282475          AP1G2
34   chr14   21837828       24646254  NM_001282988          DHRS4
35   chr14   21837828       24646254  NM_001289050       SLC22A17
..     ...        ...            ...           ...            ...
63   chr14   21837828       24646254     NM_018107          RBM23
64   chr14   21837828       24646254     NM_019852         METTL3
65   chr14   21837828       24646254     NM_020834          HOMEZ
67   chr14   21837828       24646254     NM_022060          ABHD4
68   chr14   21837828       24646254     NM_022478          CDH24
69   chr14   21837828       24646254     NM_022789           IL25
73   chr14   21837828       24646254     NM_033400          ZFHX2
74   chr14   21837828       24646254     NM_138360        CARMIL3
75   chr14   21837828       24646254     NM_138460          CMTM5
77   chr14   21837828       24646254     NM_173527           REM2
82   chr14   21837828       24646254     NM_203402          FITM1
83   chr14   21837828       24646254     NR_002916         SNORD8
84   chr14   21837828       24646254     NR_003029         SNORD9
85   chr14   21837828       24646254     NR_023921      DHRS4-AS1
88   chr14   21837828       24646254     NR_029595        MIR208A
89   chr14   21837828       24646254     NR_030624        MIR208B
90   chr14   21837828       24646254     NR_039856        MIR4707
94   chr14   21837828       24646254     NR_102688        DHRS4L1
96   chr14   21837828       24646254     NR_106990        MIR7703
97   chr14   21837828       24646254     NR_110002   LOC101926933
99   chr14   21837828       24646254     NR_110555   LOC102724814
100  chr14   21837828       24646254     NR_111966          SALL2
102  chr14   21837828       24646254     NR_120599      PRMT5-AS1
103  chr14   21837828       24646254     NR_126491           MHRT
104   chr2  236661021      236882645  NM_001244888          AGAP1
106   chr4   69231275       69487448     NM_001077        UGT2B17
107   chr4   69231275       69487448     NM_014058      TMPRSS11E
108   chr5   23981453       24109442     NR_131245        C5orf17
109   chr6  162603609      163004972     NM_013988          PARK2
110   chr9  101840344      101949652     NM_004612         TGFBR1

[80 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21730421       21852533     NM_007192    SUPT16H
1   chr14   21730421       21852533     NM_020366    RPGRIP1
2   chr14   21730421       21852533     NM_031314     HNRNPC
3   chr15   20951893       21337117  NM_001277303     POTEB2
4   chr15   20951893       21337117     NM_207355     POTEB3
5   chr15   20951893       21337117     NR_027992     NBEAP1
6   chr15   20951893       21337117     NR_028506      NF1P2
7   chr15   20951893       21337117     NR_036062  MIR3118-2
8   chr15   20951893       21337117     NR_040094  LINC01193
9   chr15   20951893       21337117     NR_049895  MIR5701-2
11  chr16   21832193       22148119  NM_001164579   C16orf52
12  chr16   21832193       22148119  NM_001310148     NPIPB4
13  chr16   21832193       22148119     NM_003366     UQCRC2
14  chr16   21832193       22148119     NM_173615      VWA3A
15  chr16   21832193       22148119     NM_173806      PDZD9
16  chr21   17852900       19036207  NM_001130914       BTG3
17  chr21   17852900       19036207  NM_001207064      CXADR
19  chr21   17852900       19036207     NR_027790   MIR99AHG
21  chr21   17852900       19036207     NR_029480   MIRLET7C
22  chr21   17852900       19036207     NR_029514     MIR99A
23  chr21   17852900       19036207     NR_029694   MIR125B2
24  chr21   17852900       19036207     NR_037585  LINC01549,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49581525       49863928  NM_001323575         AGBL4
1    chr1   49581525       49863928     NR_046839     AGBL4-IT1
2    chr1   49581525       49863928     NR_125988  LOC101929721
3    chr2   34176223       34373342     NR_126403     LINC01317
4    chr2   34176223       34373342     NR_132381     LINC01318
5   chr20   14637990       14894185     NM_080676       MACROD2
6   chr20   14637990       14894185     NR_037841   MACROD2-AS1
8   chr22   17264137       17447979  NM_001037814          GAB4
9   chr22   17264137       17447979     NM_175878          XKR3
10  chr22   17264137       17447979     NR_003607       HSFY1P1
11   chr5  110306742      110573404  NM_001323374         CAMK4
15   chr5  110306742      110573404     NM_033035          TSLP
17   chr5  110306742      110573404     NM_139281         WDR36,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12812634       13069095  NM_001009611       PRAMEF4
1    chr1   12812634       13069095  NM_001010889       PRAMEF6
2    chr1   12812634       13069095  NM_001010890       PRAMEF9
3    chr1   12812634       13069095  NM_001012276       PRAMEF8
4    chr1   12812634       13069095  NM_001013631      HNRNPCL1
5    chr1   12812634       13069095  NM_001080830      PRAMEF12
6    chr1   12812634       13069095  NM_001099850      PRAMEF18
7    chr1   12812634       13069095  NM_001100631      PRAMEF22
8    chr1   12812634       13069095  NM_001146181      HNRNPCL3
9    chr1   12812634       13069095  NM_001146344      PRAMEF11
10   chr1   12812634       13069095  NM_001294139       PRAMEF1
11   chr1   12812634       13069095  NM_001302551      HNRNPCL4
12   chr1   12812634       13069095  NM_001306072      PRAMEF26
13   chr1   12812634       13069095  NM_001310134      PRAMEF25
15   chr1   12812634       13069095     NM_023014       PRAMEF2
16   chr1   12812634       13069095     NM_152290      C1orf158
17  chr15   28669927       29126136  NM_001282468       GOLGA8M
18  chr15   28669927       29126136     NR_026589       WHAMMP2
19  chr15   28669927       29126136     NR_033351       GOLGA8F
20  chr15   28669927       29126136     NR_033353       GOLGA8G
21  chr15   28669927       29126136     NR_036443       HERC2P9
22  chr15   28669927       29126136     NR_036475  LOC100289656
23  chr15   28669927       29126136     NR_037599     PDCD6IPP2
24  chr15   28669927       29126136     NR_039734     MIR4509-3
26  chr15   28669927       29126136     NR_047567     GOLGA6L7P
27  chr16   21786465       22039714  NM_001164579      C16orf52
28  chr16   21786465       22039714  NM_001310148        NPIPB4
29  chr16   21786465       22039714     NM_003366        UQCRC2
30  chr16   21786465       22039714     NM_173806         PDZD9
31  chr16   21786465       22039714     NR_003370        RRN3P1
..    ...        ...            ...           ...           ...
35  chr16   68609950       69083956     NM_024562        TANGO6
36  chr16   68609950       69083956     NR_106988     MIR7641-2
37  chr17   78105886       78221684     NM_000199          SGSH
38  chr17   78105886       78221684  NM_001166349      SLC26A11
39  chr17   78105886       78221684  NM_001257970        CARD14
40  chr17   78105886       78221684     NM_014740        EIF4A3
44   chr2   35689890       35796823     NR_039629      MIR548AD
45   chr5     135181         945462  NM_001009877          BRD9
46   chr5     135181         945462  NM_001080478       LRRC14B
47   chr5     135181         945462  NM_001166260        TRIP13
48   chr5     135181         945462  NM_001242412          AHRR
49   chr5     135181         945462  NM_001284351        SLC9A3
51   chr5     135181         945462     NM_004168          SDHA
53   chr5     135181         945462     NM_007030          TPPP
54   chr5     135181         945462     NM_007277         EXOC3
55   chr5     135181         945462     NM_013232         PDCD6
56   chr5     135181         945462     NM_018140         CEP72
57   chr5     135181         945462     NM_024786       ZDHHC11
58   chr5     135181         945462     NM_052909      PLEKHG4B
59   chr5     135181         945462     NM_145265       CCDC127
60   chr5     135181         945462     NR_024158        PP7080
61   chr5     135181         945462     NR_039661       MIR4456
63   chr5     135181         945462     NR_103444  LOC100996325
64   chr5     135181         945462     NR_104613         HRAT5
65   chr5     135181         945462     NR_125375  LOC100288152
66   chr5     135181         945462     NR_126522     EXOC3-AS1
68   chr7  110762013      111560907  NM_001099658         LRRN3
69   chr7  110762013      111560907  NM_001244606        IMMP2L
70   chr7  110762013      111560907     NM_014705         DOCK4
72   chr7  110762013      111560907     NR_103806     DOCK4-AS1

[63 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   25796280       26171639     NM_024490        ATP10A
1   chr15   25796280       26171639     NR_039865       MIR4715
2   chr15   25796280       26171639     NR_040082  LOC100128714
3   chr16   16378008       16653887  NM_001004067         NOMO3
4   chr16   16378008       16653887  NM_001282511        NPIPA8
5   chr16   16378008       16653887     NR_036140     MIR3179-1
6   chr16   16378008       16653887     NR_036141     MIR3180-1
7   chr16   16378008       16653887     NR_036142     MIR3180-2
8   chr16   16378008       16653887     NR_036447        PKD1P1
9   chr16   16378008       16653887     NR_103772  LOC100288162
10  chr16   16378008       16653887     NR_106766     MIR6511A1
11  chr16   16378008       16653887     NR_106971     MIR6511A4
12  chr16   16378008       16653887     NR_107060     MIR6770-2
13  chr16   16378008       16653887     NR_128713     MIR3670-4
14  chr16   16477132       16639715  NM_001282511        NPIPA8
15  chr17   14138390       14241900  NM_001007530        CDRT15
16  chr17   14138390       14241900     NM_006041      HS3ST3B1
17  chr17   14138390       14241900     NR_026880      MGC12916
18   chr4  169272966      169464869  NM_001012967        DDX60L
19   chr4  169272966      169464869  NM_001166108         PALLD,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  102445650      102603604     NR_110211          OLFM3
1   chr16   14993516       15733637  NM_001128423         MPV17L
2   chr16   14993516       15733637  NM_001142469       C16orf45
3   chr16   14993516       15733637  NM_001184998       KIAA0430
4   chr16   14993516       15733637  NM_001270767          NTAN1
5   chr16   14993516       15733637  NM_001277325         NPIPA5
6   chr16   14993516       15733637  NM_001285445         PDXDC1
11  chr16   14993516       15733637  NM_001301064           RRN3
13  chr16   14993516       15733637     NM_006985         NPIPA1
15  chr16   14993516       15733637     NR_036140      MIR3179-1
16  chr16   14993516       15733637     NR_036141      MIR3180-1
17  chr16   14993516       15733637     NR_036142      MIR3180-2
18  chr16   14993516       15733637     NR_037466      MIR3180-4
19  chr16   14993516       15733637     NR_103772   LOC100288162
20  chr16   14993516       15733637     NR_106761        MIR6506
21  chr16   14993516       15733637     NR_106775      MIR6511B1
22  chr16   14993516       15733637     NR_106965      MIR6511B2
23  chr16   14993516       15733637     NR_106970      MIR6511A3
24  chr16   14993516       15733637     NR_107060      MIR6770-2
25  chr16   14993516       15733637     NR_123721  PKD1P6-NPIPP1
27  chr16   14993516       15733637     NR_125434   LOC100505915
28  chr16   14993516       15733637     NR_128713      MIR3670-4
29  chr17   47817965       48124081  NM_001077503           TAC4
30  chr17   47817965       48124081  NM_001199158           KAT7
31  chr17   47817965       48124081  NM_001242791       FLJ45513
32  chr17   47817965       48124081     NM_001934           DLX4
33  chr17   47817965       48124081     NM_005220           DLX3
34  chr17   47817965       48124081     NM_030802        FAM117A
36  chr18   67093719       67309852     NM_152721           DOK6
37  chr18   67093719       67309852     NR_134579   LOC105372179
38   chr2  133574405      133909947     NM_207363         NCKAP5
39   chr2  133574405      133909947     NR_135572   LOC101928185
40   chr7   64005295       64175949  NM_001130022         ZNF680
41   chr7   64005295       64175949  NM_001282360         ZNF107
43   chr7   64005295       64175949     NR_033245      LOC641746
44   chr7   64005295       64175949     NR_077227   LOC100128885
46   chr7   64005295       64175949     NR_106898        MIR6839
47   chr8   86702122       86907197     NR_003594       REXO1L2P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12786338       12920486  NM_001013631      HNRNPCL1
1    chr1   12786338       12920486  NM_001080830      PRAMEF12
2    chr1   12786338       12920486  NM_001103170       AADACL3
3    chr1   12786338       12920486  NM_001146181      HNRNPCL3
4    chr1   12786338       12920486  NM_001146344      PRAMEF11
5    chr1   12786338       12920486  NM_001294139       PRAMEF1
6    chr1   12786338       12920486  NM_001302551      HNRNPCL4
8    chr1   12786338       12920486     NM_023014       PRAMEF2
9    chr1   12786338       12920486     NM_152290      C1orf158
10  chr10   55651405       55907600  NM_001142770        PCDH15
13  chr14   21945574       22046308  NM_001005465        OR10G3
14  chr14   21945574       22046308  NM_001303523          TOX4
15  chr14   21945574       22046308     NM_019852        METTL3
16  chr14   21945574       22046308     NR_111966         SALL2
18  chr16   18353539       18475145  NM_001282511        NPIPA8
19  chr16   18353539       18475145     NR_103772  LOC100288162
20  chr16   18353539       18475145     NR_106971     MIR6511A4
21  chr16   18353539       18475145     NR_107060     MIR6770-2
22  chr16   82984804       83194269  NM_001220488         CDH13
24  chr16   82984804       83194269     NR_110937  LOC101928417,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr21   22653235       22763321     NM_004540       NCAM2
1   chr22   19006364       19559231  NM_001035247       UFD1L
2   chr22   19006364       19559231  NM_001166242    C22orf39
3   chr22   19006364       19559231  NM_001178010       CDC45
4   chr22   19006364       19559231  NM_001184781       DGCR2
5   chr22   19006364       19559231  NM_001256534     SLC25A1
6   chr22   19006364       19559231  NM_001318151      MRPL40
8   chr22   19006364       19559231     NM_001835      CLTCL1
9   chr22   19006364       19559231     NM_003277       CLDN5
10  chr22   19006364       19559231     NM_003325        HIRA
12  chr22   19006364       19559231     NM_005315        GSC2
14  chr22   19006364       19559231     NM_022719      DGCR14
15  chr22   19006364       19559231     NM_053006       TSSK2
17  chr22   19006364       19559231     NR_024157      DGCR11
18  chr22   19006364       19559231     NR_024159       DGCR9
19  chr22   19006364       19559231     NR_024381   LINC00895
20  chr22   19006364       19559231     NR_026651      DGCR10
21  chr22   19006364       19559231     NR_103767   LINC01311
22  chr22   19006364       19559231     NR_110533       DGCR5
23   chr3  148134568      149362910     NM_000096          CP
24   chr3  148134568      149362910  NM_001168278       WWTR1
26   chr3  148134568      149362910  NM_001184721        GYG1
27   chr3  148134568      149362910  NM_001184723     TM4SF18
28   chr3  148134568      149362910  NM_001308258        HPS3
29   chr3  148134568      149362910  NM_001318934        HLTF
31   chr3  148134568      149362910     NM_001870        CPA3
32   chr3  148134568      149362910     NM_001871        CPB1
33   chr3  148134568      149362910     NM_004617      TM4SF4
34   chr3  148134568      149362910     NM_009585       AGTR1
35   chr3  148134568      149362910     NM_014220      TM4SF1
41   chr3  148134568      149362910     NR_046648    HLTF-AS1
42   chr3  148134568      149362910     NR_046650  TM4SF1-AS1
43   chr7  102146392      102462318  NM_001031618      SPDYE2
45   chr7  102146392      102462318  NM_001097615     POLR2J3
46   chr7  102146392      102462318  NM_001114403      UPK3BL
47   chr7  102146392      102462318  NM_001277335      RASA4B
49   chr7  102146392      102462318  NM_001287150      FBXL13
50   chr7  102146392      102462318     NM_006989       RASA4
51   chr7  102146392      102462318     NM_032959     POLR2J2
53   chr7  102146392      102462318     NR_026879     FAM185A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21914421       22419619  NM_001001912         OR4E2
1   chr14   21914421       22419619  NM_001005465        OR10G3
2   chr14   21914421       22419619  NM_001005466        OR10G2
3   chr14   21914421       22419619  NM_001163380         RAB2B
4   chr14   21914421       22419619  NM_001303523          TOX4
5   chr14   21914421       22419619  NM_001317107         OR4E1
6   chr14   21914421       22419619     NM_019852        METTL3
8   chr14   21914421       22419619     NR_111966         SALL2
10  chr15   28663724       28788484     NR_033351       GOLGA8F
11  chr15   28663724       28788484     NR_033353       GOLGA8G
12  chr15   28663724       28788484     NR_039734     MIR4509-3
14   chr2   35350569       36005172     NR_039629      MIR548AD
15   chr2  186302997      187973643  NM_001144999         ITGAV
17   chr2  186302997      187973643     NM_018471        ZC3H15
18   chr2  186302997      187973643     NM_173651         FSIP2
19   chr2  186302997      187973643     NM_177454       FAM171B
20   chr2  186302997      187973643     NM_182521        ZSWIM2
21   chr2  186302997      187973643     NR_110214  LOC101927196
24   chr2  186302997      187973643     NR_110218     LINC01473
25   chr2  186302997      187973643     NR_144453     FSIP2-AS1
27  chr20   14644676       14762792     NM_080676       MACROD2
28  chr22   17198017       17335842     NM_175878          XKR3
29  chr22   17198017       17335842     NR_003607       HSFY1P1
30  chr22   17198017       17335842     NR_134584  LOC101929350
31   chr3  197163904      198462426     NM_000996        RPL35A
32   chr3  197163904      198462426  NM_001011537        FYTTD1
33   chr3  197163904      198462426  NM_001145248       FAM157A
34   chr3  197163904      198462426  NM_001145642         RUBCN
36   chr3  197163904      198462426  NM_001323027          IQCG
41   chr3  197163904      198462426     NM_032773         LRCH3
42   chr3  197163904      198462426     NM_033029          LMLN
43   chr3  197163904      198462426     NM_203314          BDH1
45   chr3  197163904      198462426     NR_003266     LOC220729
46   chr3  197163904      198462426     NR_003291     ANKRD18DP
48   chr3  197163904      198462426     NR_030627        MIR922
49   chr3  197163904      198462426     NR_046669      LMLN-AS1
50   chr7  110605538      110783248  NM_001099658         LRRN3
51   chr7  110605538      110783248  NM_001244606        IMMP2L
53   chr7  152359016      152488153     NM_005431         XRCC2
54   chr7  152359016      152488153     NM_020445        ACTR3B
55   chr9   30374244       30484330     NR_046204     LINC01242
56   chr9  116424662      116707501  NM_001318041        ZNF618,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr20   14768295       15166362  NM_080676      MACROD2
1  chr20   14768295       15166362  NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68400103       68702844  NM_001127384        CTNNA3
2   chr10   68400103       68702844     NM_178011        LRRTM3
3   chr10   68400103       68702844     NR_111911  LOC101928961
4   chr16   12265732       12404611     NM_032167         SNX29
5   chr22   18963268       19174357  NM_001184781         DGCR2
6   chr22   18963268       19174357  NM_001256534       SLC25A1
7   chr22   18963268       19174357     NM_001835        CLTCL1
8   chr22   18963268       19174357     NM_005315          GSC2
10  chr22   18963268       19174357     NM_022719        DGCR14
11  chr22   18963268       19174357     NM_053006         TSSK2
12  chr22   18963268       19174357     NR_002733         DGCR5
13  chr22   18963268       19174357     NR_024157        DGCR11
14  chr22   18963268       19174357     NR_024159         DGCR9
15  chr22   18963268       19174357     NR_026651        DGCR10
16  chr22   18963268       19174357     NR_103767     LINC01311,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   30152680       30354545     NM_000510       FSHB
1  chr11   30152680       30354545     NM_152316    ARL14EP
2  chr17   21871331       23717725  NM_001190452   MTRNR2L1
3  chr17   21871331       23717725     NR_027084   FLJ36000
4   chr2   39713975       39822190     NR_037875  LOC728730
5   chr4   75411719       75564672     NM_001657       AREG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13  113457214      113568083     NM_015205        ATP11A
1   chr16   16359064       16528521  NM_001004067         NOMO3
2   chr16   16359064       16528521  NM_001282511        NPIPA8
3   chr16   16359064       16528521     NR_036140     MIR3179-1
4   chr16   16359064       16528521     NR_036141     MIR3180-1
5   chr16   16359064       16528521     NR_036142     MIR3180-2
6   chr16   16359064       16528521     NR_036447        PKD1P1
7   chr16   16359064       16528521     NR_103772  LOC100288162
8   chr16   16359064       16528521     NR_106766     MIR6511A1
9   chr16   16359064       16528521     NR_106971     MIR6511A4
10  chr16   16359064       16528521     NR_107060     MIR6770-2
11  chr16   16359064       16528521     NR_128713     MIR3670-4
12   chr2   56543862       57769977  NM_001080433       CCDC85A
13   chr2   63201277       63492182  NM_001042692         WDPCP
14   chr2   63201277       63492182  NM_001142614         EHBP1
16   chr2   63201277       63492182  NM_001199770          OTX1
19   chr2   63201277       63492182     NR_027069  LOC100132215
21   chr2   63201277       63492182     NR_036635       DBIL5P2
23   chr7   80104116       80539242     NM_000072          CD36
26   chr7   80104116       80539242  NM_001102386         GNAT3
32   chr7   80104116       80539242     NM_006379        SEMA3C,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21798027       21936925  NM_001163380         RAB2B
1   chr14   21798027       21936925  NM_001170629          CHD8
2   chr14   21798027       21936925     NM_007192       SUPT16H
3   chr14   21798027       21936925     NM_020366       RPGRIP1
6   chr14   21798027       21936925     NR_002916        SNORD8
7   chr14   21798027       21936925     NR_003029        SNORD9
8    chr5   16051313       17277428  NM_001034850       FAM134B
9    chr5   16051313       17277428  NM_001102562       MARCH11
10   chr5   16051313       17277428  NM_001271606         BASP1
12   chr5   16051313       17277428     NM_012334         MYO10
14   chr5   16051313       17277428     NM_033414        ZNF622
15   chr5   16051313       17277428     NR_027253     LOC285696
16   chr5   16051313       17277428     NR_104625  LOC101929505
17   chr5   16051313       17277428     NR_109946  LOC101929524
18   chr6   89411959       89604491  NM_001286428         RNGTT
19   chr7   71446466       72294410  NM_001017440         CALN1
20   chr7   71446466       72294410  NM_001145440         TYW1B
22   chr7   71446466       72294410     NR_039793     MIR4650-1
23   chr7   75734582       76091936  NM_001102594          DTX2
24   chr7   75734582       76091936  NM_001110199         SRRM3
25   chr7   75734582       76091936  NM_001110354           ZP3
26   chr7   75734582       76091936     NM_001540         HSPB1
28   chr7   75734582       76091936     NM_012479         YWHAG
29   chr7   75734582       76091936     NM_080744         SSC4D
30   chr7   75734582       76091936     NR_135079       GTF2IP7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   86143920       86274846     NM_017953        ZNHIT6
1    chr1   86143920       86274846     NM_152890       COL24A1
2   chr12   85433570       85541921  NM_001079910        LRRIQ1
3   chr14   21915365       22180772  NM_001001912         OR4E2
4   chr14   21915365       22180772  NM_001005465        OR10G3
5   chr14   21915365       22180772  NM_001005466        OR10G2
6   chr14   21915365       22180772  NM_001163380         RAB2B
7   chr14   21915365       22180772  NM_001303523          TOX4
8   chr14   21915365       22180772  NM_001317107         OR4E1
9   chr14   21915365       22180772     NM_019852        METTL3
11  chr14   21915365       22180772     NR_111966         SALL2
13   chr3  117926929      119008088  NM_001015887        IGSF11
14   chr3  117926929      119008088     NM_006952         UPK1B
16   chr3  117926929      119008088     NM_152539       C3orf30
17   chr3  117926929      119008088     NM_212543       B4GALT4
18   chr3  117926929      119008088     NR_046230    IGSF11-AS1
19   chr3  117926929      119008088     NR_046574   B4GALT4-AS1
20   chr3  117926929      119008088     NR_135547  LOC105374060
21   chr3  117926929      119008088     NR_135573  LOC101926968,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17228665       17657550  NM_001037814          GAB4
1   chr22   17228665       17657550  NM_001163079         CECR6
2   chr22   17228665       17657550  NM_001289905        IL17RA
3   chr22   17228665       17657550     NM_017829         CECR5
6   chr22   17228665       17657550     NM_175878          XKR3
7   chr22   17228665       17657550     NR_003607       HSFY1P1
8   chr22   17228665       17657550     NR_015352         CECR7
9   chr22   17228665       17657550     NR_024482     CECR5-AS1
10  chr22   17228665       17657550     NR_103793  LOC100996342
11  chr22   17228665       17657550     NR_134584  LOC101929350
12   chr3   41278297       41417969  NM_001322500          ULK4
13   chr3   41278297       41417969  NM_001330729        CTNNB1
16   chr4  167658966      167763674  NM_001204353        SPOCK3
19   chr7   29463127       29631413  NM_001293069          CHN2
23   chr7   29463127       29631413  NM_001329997         PRR15,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21751494       22219632  NM_001001912         OR4E2
1   chr14   21751494       22219632  NM_001005465        OR10G3
2   chr14   21751494       22219632  NM_001005466        OR10G2
3   chr14   21751494       22219632  NM_001163380         RAB2B
4   chr14   21751494       22219632  NM_001170629          CHD8
5   chr14   21751494       22219632  NM_001303523          TOX4
6   chr14   21751494       22219632  NM_001317107         OR4E1
7   chr14   21751494       22219632     NM_007192       SUPT16H
8   chr14   21751494       22219632     NM_019852        METTL3
9   chr14   21751494       22219632     NM_020366       RPGRIP1
12  chr14   21751494       22219632     NR_002916        SNORD8
13  chr14   21751494       22219632     NR_003029        SNORD9
14  chr14   21751494       22219632     NR_111966         SALL2
16  chr14   47804434       48050320  NM_001113498         MDGA2
19  chr20   40527298       40703114     NM_133170         PTPRT
20   chr7     138121         257350     NM_020223        FAM20C
21   chr7     138121         257350     NR_108065  LOC100507642
22   chr7     138121         257350     NR_134324  LOC105375115
23   chr7     138121         257350     NR_134325  LOC102723672
24   chr7    3274752        3506803     NM_152744          SDK1
25   chr7   81971031       82137168     NM_000722      CACNA2D1
27   chr9   11955434       13496225     NM_000550         TYRP1
28   chr9   11955434       13496225  NM_001261407          MPDZ
30   chr9   11955434       13496225     NM_203403       LURAP1L
31   chr9   11955434       13496225     NR_033863      FLJ41200
32   chr9   11955434       13496225     NR_125775   LURAP1L-AS1
33   chr9   11955434       13496225     NR_132976      SNORD137
34   chr9   43303268       43706084  NM_001145196     SPATA31A6
35   chr9   43303268       43706084  NM_001201380      CNTNAP3B
36   chr9   43303268       43706084     NR_111893     CNTNAP3P2
37   chr9   43303268       43706084     NR_126166       FAM74A7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143410768      144571261  NM_001123068       PPIAL4G
1    chr1  143410768      144571261  NM_001135789       PPIAL4C
2    chr1  143410768      144571261  NM_001278267        NBPF20
3    chr1  143410768      144571261  NM_001287385        FAM72C
4    chr1  143410768      144571261  NM_001345942        FAM72D
8    chr1  143410768      144571261     NR_024511     LINC00623
10   chr1  143410768      144571261     NR_104014     LINC01138
11   chr1  143410768      144571261     NR_106967       MIR6077
12   chr1  143410768      144571261     NR_111930  LOC100132057
13   chr1  143410768      144571261     NR_111953     LINC00869
15  chr15   30318346       30831690  NM_001282472       GOLGA8J
16  chr15   30318346       30831690  NM_001282484       GOLGA8R
17  chr15   30318346       30831690     NM_139320      CHRFAM7A
18  chr15   30318346       30831690     NR_026771  DKFZP434L187
19  chr15   30318346       30831690     NR_026859        ULK4P3
20  chr15   30318346       30831690     NR_033933       GOLGA8T,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21823240       21923538  NM_001170629         CHD8
1   chr14   21823240       21923538     NM_007192      SUPT16H
3   chr14   21823240       21923538     NR_002916       SNORD8
4   chr14   21823240       21923538     NR_003029       SNORD9
5   chr16   21757506       21859515  NM_001161683         OTOA
6   chr16   21757506       21859515  NM_001310148       NPIPB4
9   chr16   21757506       21859515     NR_003370       RRN3P1
10  chr16   71055969       71457468  NM_001099642        CMTR2
11  chr16   71055969       71457468  NM_001198542        HYDIN
17  chr16   71055969       71457468     NM_001740        CALB2
20  chr20   14735173       14878582     NM_080676      MACROD2
21  chr20   14735173       14878582     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   97432185       97583908     NM_000110          DPYD
1    chr1   97432185       97583908     NR_046590      DPYD-AS1
2   chr11   48402375       48602191  NM_001005512        OR4A47
3   chr14   21833706       22270203  NM_001001912         OR4E2
4   chr14   21833706       22270203  NM_001005465        OR10G3
5   chr14   21833706       22270203  NM_001005466        OR10G2
6   chr14   21833706       22270203  NM_001163380         RAB2B
7   chr14   21833706       22270203  NM_001170629          CHD8
8   chr14   21833706       22270203  NM_001303523          TOX4
9   chr14   21833706       22270203  NM_001317107         OR4E1
10  chr14   21833706       22270203     NM_007192       SUPT16H
11  chr14   21833706       22270203     NM_019852        METTL3
14  chr14   21833706       22270203     NR_002916        SNORD8
15  chr14   21833706       22270203     NR_003029        SNORD9
16  chr14   21833706       22270203     NR_111966         SALL2
18   chr8    7065906       10500073  NM_001040705      DEFB107B
20   chr8    7065906       10500073  NM_001080826         PRAG1
21   chr8    7065906       10500073  NM_001081551      DEFB103A
23   chr8    7065906       10500073  NM_001081552       SPAG11A
24   chr8    7065906       10500073  NM_001135670          MSRA
26   chr8    7065906       10500073  NM_001164457       ZNF705G
27   chr8    7065906       10500073  NM_001193630       ZNF705B
28   chr8    7065906       10500073  NM_001197020        PRSS55
29   chr8    7065906       10500073  NM_001201329       PPP1R3B
30   chr8    7065906       10500073  NM_001205266        DEFB4B
31   chr8    7065906       10500073  NM_001256871       USP17L3
32   chr8    7065906       10500073  NM_001256872       USP17L8
33   chr8    7065906       10500073  NM_001256873       USP17L1
34   chr8    7065906       10500073  NM_001256874       USP17L4
35   chr8    7065906       10500073  NM_001282478       PRR23D2
37   chr8    7065906       10500073  NM_001282479       PRR23D1
39   chr8    7065906       10500073     NM_003747          TNKS
40   chr8    7065906       10500073     NM_004225        MFHAS1
41   chr8    7065906       10500073     NM_004942        DEFB4A
43   chr8    7065906       10500073     NM_058200       SPAG11B
48   chr8    7065906       10500073     NM_080389      DEFB104A
50   chr8    7065906       10500073     NM_152250      DEFB105A
52   chr8    7065906       10500073     NM_152251      DEFB106A
54   chr8    7065906       10500073     NM_153332          ERI1
55   chr8    7065906       10500073     NM_178857         RP1L1
56   chr8    7065906       10500073     NM_194284        CLDN23
58   chr8    7065906       10500073     NR_003668    DEFB109P1B
60   chr8    7065906       10500073     NR_024281     LINC00599
61   chr8    7065906       10500073     NR_024361      FAM86B3P
64   chr8    7065906       10500073     NR_027000     LINC00965
67   chr8    7065906       10500073     NR_027423        FAM66B
68   chr8    7065906       10500073     NR_027424        FAM66E
69   chr8    7065906       10500073     NR_029668      MIR124-1
70   chr8    7065906       10500073     NR_030327        MIR597
71   chr8    7065906       10500073     NR_031689      MIR548I3
72   chr8    7065906       10500073     NR_039804       MIR4660
73   chr8    7065906       10500073     NR_040039     LOC157273
74   chr8    7065906       10500073     NR_046343      FAM90A7P
76   chr8    7065906       10500073     NR_046351     FAM90A10P
77   chr8    7065906       10500073     NR_120604    LINCR-0001
78   chr8    7065906       10500073     NR_125431  LOC101929128,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  102440529      102582533     NR_110211      OLFM3
1   chr1  143757285      144488942  NM_001123068    PPIAL4G
2   chr1  143757285      144488942  NM_001135789    PPIAL4C
3   chr1  143757285      144488942  NM_001278267     NBPF20
4   chr1  143757285      144488942  NM_001287385     FAM72C
5   chr1  143757285      144488942  NM_001345942     FAM72D
9   chr1  143757285      144488942     NR_024511  LINC00623
11  chr1  143757285      144488942     NR_111953  LINC00869
13  chr2  242461160      242805211  NM_001164356      THAP4
14  chr2  242461160      242805211  NM_001165031      DTYMK
15  chr2  242461160      242805211  NM_001167601       NEU4
17  chr2  242461160      242805211  NM_001287249     D2HGDH
18  chr2  242461160      242805211  NM_001330161       ING5
20  chr2  242461160      242805211     NM_005018      PDCD1
22  chr2  242461160      242805211     NM_022134    GAL3ST2
24  chr2  242461160      242805211     NM_032515        BOK
25  chr2  242461160      242805211     NM_178326      ATG4B
26  chr2  242461160      242805211     NR_033346    BOK-AS1
27  chr5   59651360       59792796  NM_001165899      PDE4D
28  chr5   59651360       59792796     NR_024617      PART1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21766163       21939776  NM_001163380         RAB2B
1   chr14   21766163       21939776  NM_001170629          CHD8
2   chr14   21766163       21939776     NM_007192       SUPT16H
3   chr14   21766163       21939776     NM_020366       RPGRIP1
6   chr14   21766163       21939776     NR_002916        SNORD8
7   chr14   21766163       21939776     NR_003029        SNORD9
8    chr5   95270379       95377825     NM_012081          ELL2
9    chr5   95270379       95377825     NR_130776  LOC101929710
10   chr9   28480573       28593127  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56531832       56687841  NM_001142770        PCDH15
3   chr13   88041746       88429926     NM_015567       SLITRK5
4   chr13   88041746       88429926     NR_033829     MIR4500HG
5   chr13   88041746       88429926     NR_039722       MIR4500
6   chr16   16413660       16546458  NM_001282511        NPIPA8
7   chr16   16413660       16546458     NR_036447        PKD1P1
8   chr16   16413660       16546458     NR_103772  LOC100288162
9   chr16   16413660       16546458     NR_106766     MIR6511A1
10  chr16   16413660       16546458     NR_106971     MIR6511A4
11  chr16   16413660       16546458     NR_107060     MIR6770-2
12  chr18   24726113       24897632  NM_001256316         CHST9
13  chr19   21895949       21997762  NM_001256650         ZNF43
15  chr19   21895949       21997762     NM_173531        ZNF100
16  chr19   21895949       21997762     NR_024523     LOC641367,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68401713       68662054  NM_001127384        CTNNA3
2   chr10   68401713       68662054     NR_111911  LOC101928961
3   chr13   46098116       46204360     NM_031431          COG3
4   chr13   46098116       46204360     NM_182542       ERICH6B
5   chr14   21820373       21934406  NM_001163380         RAB2B
6   chr14   21820373       21934406  NM_001170629          CHD8
7   chr14   21820373       21934406     NM_007192       SUPT16H
10  chr14   21820373       21934406     NR_002916        SNORD8
11  chr14   21820373       21934406     NR_003029        SNORD9
12  chr20   14822362       15376258  NM_001033087       MACROD2
14  chr20   14822362       15376258     NR_037841   MACROD2-AS1
16   chr3  131220963      131547425  NM_001289112         CPNE4
17   chr3  131220963      131547425     NM_007208         MRPL3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr4   69254185       69395820     NM_014058     TMPRSS11E
1   chr7   88250635       88445933     NM_152706       C7orf62
2   chr7   88250635       88445933     NM_181646       ZNF804B
3   chr7  143042328      143176946     NM_000083         CLCN1
4   chr7  143042328      143176946  NM_001278297       FAM131B
5   chr7  143042328      143176946  NM_001322263  LOC100507507
6   chr7  143042328      143176946     NM_003461           ZYX
7   chr7  143042328      143176946     NM_005232         EPHA1
9   chr7  143042328      143176946     NM_176883       TAS2R41
10  chr7  143042328      143176946     NM_177437       TAS2R60
11  chr7  143042328      143176946     NR_033897     EPHA1-AS1
12  chr7  143042328      143176946     NR_106952       MIR6892
13  chr9   38950361       39112967     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  102437505      102572755     NR_110211      OLFM3
1   chr12  130249557      130411358     NM_133448   TMEM132D
2   chr13   54693814       55041584     NR_031628    MIR1297
3   chr13   54693814       55041584     NR_108062  LINC00458
5   chr14   21914119       22024391  NM_001163380      RAB2B
6   chr14   21914119       22024391  NM_001303523       TOX4
7   chr14   21914119       22024391     NM_019852     METTL3
9   chr14   21914119       22024391     NR_111966      SALL2
11   chr7   64106729       64242116  NM_001282360     ZNF107
13   chr7   64106729       64242116     NR_106898    MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245031036      245176465  NM_001143943        EFCAB2
3    chr1  245031036      245176465     NR_111907  LOC101928068
4   chr15   28676270       29467912  NM_001130414         APBA2
5   chr15   28676270       29467912  NM_001282468       GOLGA8M
6   chr15   28676270       29467912     NM_015307      FAM189A1
7   chr15   28676270       29467912     NR_026589       WHAMMP2
8   chr15   28676270       29467912     NR_033351       GOLGA8F
9   chr15   28676270       29467912     NR_033353       GOLGA8G
10  chr15   28676270       29467912     NR_036443       HERC2P9
11  chr15   28676270       29467912     NR_036475  LOC100289656
12  chr15   28676270       29467912     NR_037599     PDCD6IPP2
13  chr15   28676270       29467912     NR_039734     MIR4509-3
14  chr15   28676270       29467912     NR_047567     GOLGA6L7P
15  chr16   68628722       68899917  NM_001317184          CDH1
16  chr16   68628722       68899917  NM_001317195          CDH3
17  chr16   68628722       68899917     NM_024562        TANGO6
18  chr16   68628722       68899917     NR_106988     MIR7641-2
19  chr20   23366589       23677902     NM_000099          CST3
20  chr20   23366589       23677902  NM_001008693          CST9
21  chr20   23366589       23677902  NM_001283018          NAPB
23  chr20   23366589       23677902     NM_001899          CST4
24  chr20   23366589       23677902     NM_005492          CST8
25  chr20   23366589       23677902     NM_080610         CST9L
26  chr20   23366589       23677902     NM_080830         CST11
27  chr20   23366589       23677902     NM_138283         CSTL1
28  chr20   23366589       23677902     NR_001279        CST13P
29   chr4   91192847       91722311  NM_001145065        CCSER1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   89013999       89197152     NR_024397  NUTM2A-AS1
1   chr10   89013999       89197152     NR_029408   LINC00863
2   chr10   89013999       89197152     NR_046091   LINC00864
3   chr10   89013999       89197152     NR_075100      NUTM2D
5   chr15   77880735       78072689  NM_001301186      LINGO1
15  chr15   77880735       78072689     NR_045123  LINGO1-AS1
16  chr15   77880735       78072689     NR_120361  LINGO1-AS2
17  chr16   29523131       29655733     NR_049833   MIR3680-2
18  chr16   29523131       29655733     NR_135305      SMG1P2
20   chr7    3256944        3434954     NM_152744        SDK1
21   chr7   64212470       64324483  NM_001160183      ZNF138,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  112376671      112498205     NM_172198         KCND3
1    chr1  112376671      112498205     NR_046619     KCND3-AS1
2    chr1  112376671      112498205     NR_046783     KCND3-IT1
3   chr15   28288843       28404937     NM_000275          OCA2
5   chr15   28288843       28404937     NM_004667         HERC2
6   chr16   21500295       21935421  NM_001077180        METTL9
7   chr16   21500295       21935421  NM_001161683          OTOA
9   chr16   21500295       21935421  NM_001310148        NPIPB4
10  chr16   21500295       21935421     NM_005849         IGSF6
13  chr16   21500295       21935421     NR_002594      SLC7A5P2
14  chr16   21500295       21935421     NR_003370        RRN3P1
15  chr16   21500295       21935421     NR_027155        SMG1P3
16  chr16   21500295       21935421     NR_049833     MIR3680-2
17  chr16   21500295       21935421     NR_110930  LOC101927814
18   chr6   12814912       12972211  NM_001322308       PHACTR1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr10  100698261      100896615  NM_001166244        HPSE2
1  chr13   22379122       22505917     NR_047040    LINC00424
2  chr20   14818863       15073930     NM_080676      MACROD2
3  chr20   14818863       15073930     NR_037841  MACROD2-AS1
5   chr7  110425515      110537816  NM_001244606       IMMP2L
7   chr9   39130247       39258334     NM_033655      CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28743820       29309957  NM_001130414         APBA2
1   chr15   28743820       29309957  NM_001282468       GOLGA8M
2   chr15   28743820       29309957     NR_026589       WHAMMP2
3   chr15   28743820       29309957     NR_033351       GOLGA8F
4   chr15   28743820       29309957     NR_033353       GOLGA8G
5   chr15   28743820       29309957     NR_036443       HERC2P9
6   chr15   28743820       29309957     NR_036475  LOC100289656
7   chr15   28743820       29309957     NR_037599     PDCD6IPP2
8   chr15   28743820       29309957     NR_047567     GOLGA6L7P
9   chr19   57911664       58076251  NM_001023561        ZNF749
10  chr19   57911664       58076251  NM_001098491        ZNF419
11  chr19   57911664       58076251  NM_001144068        ZNF772
12  chr19   57911664       58076251  NM_001172773        ZNF548
13  chr19   57911664       58076251  NM_001199295        ZNF549
14  chr19   57911664       58076251  NM_001277090        ZNF550
15  chr19   57911664       58076251  NM_001304334        ZNF773
17  chr19   57911664       58076251  NM_001330617         ZNF17
19  chr19   57911664       58076251     NM_020633         VN1R1
21  chr22   17216272       17368789     NM_175878          XKR3
22  chr22   17216272       17368789     NR_003607       HSFY1P1
23  chr22   17216272       17368789     NR_134584  LOC101929350
24   chr4  190518183      190634675     NR_121679     LINC01262
25   chr4  190518183      190634675     NR_135513  LOC105379514
26   chr9   39017841       39150681     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr12  130222548      130346494     NM_133448       TMEM132D
1   chr15   78389108       78559146  NM_001101404          SH2D7
2   chr15   78389108       78559146  NM_001130182         DNAJA4
4   chr15   78389108       78559146  NM_001199377         ACSBG1
5   chr15   78389108       78559146  NM_001301224           CIB2
6   chr15   78389108       78559146     NM_005530          IDH3A
8   chr16   14996495       15434553  NM_001270767          NTAN1
9   chr16   14996495       15434553  NM_001285445         PDXDC1
14  chr16   14996495       15434553  NM_001301064           RRN3
16  chr16   14996495       15434553     NM_006985         NPIPA1
17  chr16   14996495       15434553     NR_036141      MIR3180-1
18  chr16   14996495       15434553     NR_036142      MIR3180-2
19  chr16   14996495       15434553     NR_037466      MIR3180-4
20  chr16   14996495       15434553     NR_103772   LOC100288162
21  chr16   14996495       15434553     NR_106775      MIR6511B1
22  chr16   14996495       15434553     NR_106965      MIR6511B2
23  chr16   14996495       15434553     NR_106970      MIR6511A3
24  chr16   14996495       15434553     NR_107060      MIR6770-2
25  chr16   14996495       15434553     NR_123721  PKD1P6-NPIPP1
27  chr16   14996495       15434553     NR_125434   LOC100505915
28  chr16   14996495       15434553     NR_128713      MIR3670-4
29   chr2   97514172       97635967  NM_001122646        FAM178B
31   chr2   97514172       97635967     NM_016466        ANKRD39
33   chr2   97514172       97635967     NM_017789         SEMA4C
34   chr2   97514172       97635967     NR_110209   LOC101927053
35   chr3  131349016      131473656  NM_001289112          CPNE4
38   chr7   64083525       64212314  NM_001282360         ZNF107
40   chr7   64083525       64212314     NR_106898        MIR6839,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr13   63285444       63477976     NR_047029      LINC00448
3   chr14   21849304       21960263  NM_001163380          RAB2B
4   chr14   21849304       21960263  NM_001170629           CHD8
5   chr14   21849304       21960263  NM_001303523           TOX4
6   chr14   21849304       21960263     NM_007192        SUPT16H
9   chr14   21849304       21960263     NR_002916         SNORD8
10  chr14   21849304       21960263     NR_003029         SNORD9
11  chr19    9351632        9459808  NM_001079935         OR7E24
12  chr19    9351632        9459808  NM_001172650  ZNF559-ZNF177
13  chr19    9351632        9459808  NM_001202406         ZNF559
16  chr19    9351632        9459808     NM_198535         ZNF699
17   chr2   62220608       62374618  NM_001321781         COMMD1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   68096052       68424219  NM_001127384     CTNNA3
2  chr16   16439895       16567485  NM_001282511     NPIPA8
3  chr16   16439895       16567485     NR_036447     PKD1P1
4  chr16   16439895       16567485     NR_106971  MIR6511A4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87380797       88184029  NM_001134492        HS2ST1
1    chr1   87380797       88184029  NM_001290053  LOC101927844
2    chr1   87380797       88184029     NM_006769          LMO4
4    chr1   87380797       88184029     NR_026985     LINC01140
7    chr1   87380797       88184029     NR_038324     LINC01364
8   chr10   68012753       68369745  NM_001127384        CTNNA3
10  chr12   81015144       81228607  NM_001145026         PTPRQ
11  chr12   81015144       81228607  NM_001324423         LIN7A
12  chr12   81015144       81228607     NM_002469          MYF6
13  chr12   81015144       81228607     NM_005593          MYF5
14  chr12   81015144       81228607     NR_030348        MIR617
15  chr12   81015144       81228607     NR_120468     LINC01490
16  chr22   20069120       20173585  NM_001190326         DGCR8
17  chr22   20069120       20173585  NM_001243537       CCDC188
18  chr22   20069120       20173585  NM_001278639        RANBP1
21  chr22   20069120       20173585     NM_013373        ZDHHC8
22  chr22   20069120       20173585     NM_022727        TRMT2A
23  chr22   20069120       20173585     NR_031706       MIR1306
24  chr22   20069120       20173585     NR_037412       MIR3618
25  chr22   20069120       20173585     NR_106874       MIR6816
26   chr5     132851         726295  NM_001080478       LRRC14B
27   chr5     132851         726295  NM_001242412          AHRR
28   chr5     132851         726295  NM_001284351        SLC9A3
29   chr5     132851         726295     NM_004168          SDHA
30   chr5     132851         726295     NM_007030          TPPP
31   chr5     132851         726295     NM_007277         EXOC3
32   chr5     132851         726295     NM_013232         PDCD6
33   chr5     132851         726295     NM_018140         CEP72
34   chr5     132851         726295     NM_052909      PLEKHG4B
35   chr5     132851         726295     NM_145265       CCDC127
36   chr5     132851         726295     NR_024158        PP7080
37   chr5     132851         726295     NR_039661       MIR4456
39   chr5     132851         726295     NR_103444  LOC100996325
40   chr5     132851         726295     NR_104613         HRAT5
41   chr5     132851         726295     NR_125375  LOC100288152
42   chr5     132851         726295     NR_126522     EXOC3-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143061134      143253512     NR_110761  LOC102723769
1   chr13   95796521       96227910  NM_001160100        CLDN10
2   chr13   95796521       96227910  NM_001301829         ABCC4
5   chr13   95796521       96227910     NR_046533    CLDN10-AS1
6   chr14   21883823       22014793  NM_001163380         RAB2B
7   chr14   21883823       22014793  NM_001170629          CHD8
8   chr14   21883823       22014793  NM_001303523          TOX4
9   chr14   21883823       22014793     NM_019852        METTL3
12  chr14   21883823       22014793     NR_111966         SALL2
14  chr16   76788026       77157285     NR_039870       MIR4719
15   chr7   83077339       83293793  NM_001178129        SEMA3E,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   40849394       42597915  NM_001346175        LRFN5
1   chr14   40849394       42597915     NR_109757    LOC644919
3   chr16   21726855       22338928  NM_001161683         OTOA
4   chr16   21726855       22338928  NM_001164579     C16orf52
5   chr16   21726855       22338928  NM_001258033       POLR3E
6   chr16   21726855       22338928  NM_001310148       NPIPB4
7   chr16   21726855       22338928     NM_003366       UQCRC2
8   chr16   21726855       22338928     NM_013302        EEF2K
11  chr16   21726855       22338928     NM_173615        VWA3A
12  chr16   21726855       22338928     NM_173806        PDZD9
13  chr16   21726855       22338928     NR_003370       RRN3P1
14   chr2   51985238       52163193     NR_135237    LOC730100
15  chr20   14687296       15089642     NM_080676      MACROD2
16  chr20   14687296       15089642     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr15   28554301       29780416  NM_001130414          APBA2
1   chr15   28554301       29780416  NM_001282468        GOLGA8M
2   chr15   28554301       29780416     NM_004667          HERC2
3   chr15   28554301       29780416     NM_015307       FAM189A1
4   chr15   28554301       29780416     NM_138704         NSMCE3
5   chr15   28554301       29780416     NR_026589        WHAMMP2
6   chr15   28554301       29780416     NR_033351        GOLGA8F
8   chr15   28554301       29780416     NR_033353        GOLGA8G
10  chr15   28554301       29780416     NR_036443        HERC2P9
11  chr15   28554301       29780416     NR_036475   LOC100289656
12  chr15   28554301       29780416     NR_037599      PDCD6IPP2
13  chr15   28554301       29780416     NR_039734      MIR4509-3
15  chr15   28554301       29780416     NR_047567      GOLGA6L7P
16  chr16   15030643       15321623  NM_001270767          NTAN1
17  chr16   15030643       15321623  NM_001285445         PDXDC1
22  chr16   15030643       15321623  NM_001301064           RRN3
24  chr16   15030643       15321623     NM_006985         NPIPA1
25  chr16   15030643       15321623     NR_037466      MIR3180-4
26  chr16   15030643       15321623     NR_106775      MIR6511B1
27  chr16   15030643       15321623     NR_106965      MIR6511B2
28  chr16   15030643       15321623     NR_123721  PKD1P6-NPIPP1
30  chr16   15030643       15321623     NR_125434   LOC100505915,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21837267       21977045  NM_001163380        RAB2B
1   chr14   21837267       21977045  NM_001170629         CHD8
2   chr14   21837267       21977045  NM_001303523         TOX4
3   chr14   21837267       21977045     NM_007192      SUPT16H
4   chr14   21837267       21977045     NM_019852       METTL3
7   chr14   21837267       21977045     NR_002916       SNORD8
8   chr14   21837267       21977045     NR_003029       SNORD9
9   chr14   37992674       38218422  NM_001195296       MIPOL1
10  chr14   37992674       38218422  NM_001310135         TTC6
11  chr14   37992674       38218422     NM_004496        FOXA1
12  chr19   21644950       21839860  NM_001001415       ZNF429
13  chr19   21644950       21839860     NR_037194    LINC00664
14  chr20   14889920       15010498     NM_080676      MACROD2
15  chr20   14889920       15010498     NR_037841  MACROD2-AS1
17   chr4   56335999       58183889     NM_000938       POLR2B
18   chr4   56335999       58183889  NM_001024924        EXOC1
19   chr4   56335999       58183889  NM_001079524        PAICS
20   chr4   56335999       58183889  NM_001145459         HOPX
22   chr4   56335999       58183889  NM_001193508         REST
23   chr4   56335999       58183889  NM_001253835       IGFBP7
24   chr4   56335999       58183889  NM_001256475        THEGL
25   chr4   56335999       58183889  NM_001267843        CLOCK
26   chr4   56335999       58183889  NM_001271718       SPINK2
27   chr4   56335999       58183889  NM_001286668        AASDH
30   chr4   56335999       58183889     NM_002703         PPAT
34   chr4   56335999       58183889     NM_006681          NMU
35   chr4   56335999       58183889     NM_006947        SRP72
36   chr4   56335999       58183889     NM_020722     KIAA1211
38   chr4   56335999       58183889     NM_025009       CEP135
39   chr4   56335999       58183889     NM_032313         NOA1
40   chr4   56335999       58183889     NM_152401        PDCL2
41   chr4   56335999       58183889     NM_206919         ARL9
42   chr4   56335999       58183889     NR_003935    LOC644145
43   chr4   56335999       58183889     NR_034081   IGFBP7-AS1
45   chr4   56335999       58183889     NR_106988    MIR7641-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144826755      145239871  NM_001002810       PDE4DIP
7    chr1  144826755      145239871  NM_001277444         NBPF9
8    chr1  144826755      145239871  NM_001278267        NBPF20
9    chr1  144826755      145239871     NM_004892        SEC22B
11   chr1  144826755      145239871     NM_203458      NOTCH2NL
12   chr1  144826755      145239871     NR_102405         NBPF8
13  chr12   41692918       41950363  NM_001164595        PDZRN4
15  chr14   55638101       55892199     NM_014750        DLGAP5
16  chr14   55638101       55892199     NM_014924         ATG14
17  chr14   55638101       55892199     NM_017943        FBXO34
19  chr14   55638101       55892199     NM_199047         TBPL2
20  chr16   21476720       21852061  NM_001077180        METTL9
21  chr16   21476720       21852061  NM_001161683          OTOA
23  chr16   21476720       21852061  NM_001310148        NPIPB4
24  chr16   21476720       21852061     NM_005849         IGSF6
27  chr16   21476720       21852061     NR_002594      SLC7A5P2
28  chr16   21476720       21852061     NR_003370        RRN3P1
29  chr16   21476720       21852061     NR_027155        SMG1P3
30  chr16   21476720       21852061     NR_049833     MIR3680-2
31  chr16   21476720       21852061     NR_110930  LOC101927814
32  chr21   17864360       18067266     NR_027790      MIR99AHG
34  chr21   17864360       18067266     NR_029480      MIRLET7C
35  chr21   17864360       18067266     NR_029514        MIR99A
36  chr21   17864360       18067266     NR_029694      MIR125B2
45   chr5   17492619       17878092     NR_134286     LOC646241
47   chr9    9937797       10051899     NM_002839         PTPRD
48   chr9   28634155       28788471  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   88466393       88645669  NM_001127464        ZNF469
1   chr16   88466393       88645669  NM_001294340        ZC3H18
2   chr16   88466393       88645669     NM_153813         ZFPM1
3   chr16   88466393       88645669     NR_049821       MIR5189
4    chr2     896663        1224830     NM_018968         SNTG2
5    chr2     896663        1224830     NR_110179  LOC101060385
6    chr2     896663        1224830     NR_136151  LOC101060391
7   chr20    5209002        5714586     NM_019593        GPCPD1
8   chr20    5209002        5714586     NM_144773        PROKR2
9   chr20    5209002        5714586     NR_015406     LINC00654
10  chr20    5209002        5714586     NR_029405     LOC643406
11  chr20    5209002        5714586     NR_038240     LINC00658
12  chr20    5209002        5714586     NR_109860  LOC101929207
13  chr22   17192054       17643419  NM_001037814          GAB4
14  chr22   17192054       17643419  NM_001163079         CECR6
15  chr22   17192054       17643419  NM_001289905        IL17RA
16  chr22   17192054       17643419     NM_017829         CECR5
19  chr22   17192054       17643419     NM_175878          XKR3
20  chr22   17192054       17643419     NR_003607       HSFY1P1
21  chr22   17192054       17643419     NR_015352         CECR7
22  chr22   17192054       17643419     NR_024482     CECR5-AS1
23  chr22   17192054       17643419     NR_103793  LOC100996342
24  chr22   17192054       17643419     NR_134584  LOC101929350
25   chr3  172113990      172380981  NM_001135095        FNDC3B
26   chr3  172113990      172380981  NM_001146276         NCEH1
27   chr3  172113990      172380981  NM_001190942       TNFSF10
29   chr3  172113990      172380981     NM_004122          GHSR
32   chr3  196797773      196949253  NM_001204386          DLG1
35   chr5   99270882      100760960     NM_005668       ST8SIA4
37   chr5   99270882      100760960     NM_198507       FAM174A
38   chr5   99270882      100760960     NR_027503  LOC100133050
39   chr5   99270882      100760960     NR_031686       MIR548P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72639118       72740200     NM_013381         TRHDE
1   chr12   72639118       72740200     NR_026836     TRHDE-AS1
3   chr16   18434506       18559521  NM_001004060         NOMO2
4   chr16   18434506       18559521     NR_036140     MIR3179-1
5   chr16   18434506       18559521     NR_036142     MIR3180-2
6   chr16   18434506       18559521     NR_036144     MIR3180-3
7   chr16   18434506       18559521     NR_037442     MIR3670-1
8   chr16   18434506       18559521     NR_103772  LOC100288162
9   chr16   18434506       18559521     NR_106971     MIR6511A4
10  chr16   18434506       18559521     NR_107060     MIR6770-2
11  chr20   40593613       40792422     NM_133170         PTPRT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12794404       13071798  NM_001009611       PRAMEF4
1    chr1   12794404       13071798  NM_001010889       PRAMEF6
2    chr1   12794404       13071798  NM_001010890       PRAMEF9
3    chr1   12794404       13071798  NM_001012276       PRAMEF8
4    chr1   12794404       13071798  NM_001013631      HNRNPCL1
5    chr1   12794404       13071798  NM_001080830      PRAMEF12
6    chr1   12794404       13071798  NM_001099850      PRAMEF18
7    chr1   12794404       13071798  NM_001100631      PRAMEF22
8    chr1   12794404       13071798  NM_001146181      HNRNPCL3
9    chr1   12794404       13071798  NM_001146344      PRAMEF11
10   chr1   12794404       13071798  NM_001294139       PRAMEF1
11   chr1   12794404       13071798  NM_001302551      HNRNPCL4
12   chr1   12794404       13071798  NM_001306072      PRAMEF26
13   chr1   12794404       13071798  NM_001310134      PRAMEF25
15   chr1   12794404       13071798     NM_023014       PRAMEF2
16   chr1   12794404       13071798     NM_152290      C1orf158
17  chr14   21826754       21939637  NM_001163380         RAB2B
18  chr14   21826754       21939637  NM_001170629          CHD8
19  chr14   21826754       21939637     NM_007192       SUPT16H
22  chr14   21826754       21939637     NR_002916        SNORD8
23  chr14   21826754       21939637     NR_003029        SNORD9
24   chr4  108691079      108822395  NM_001136258         SGMS2
26   chr4  108691079      108822395     NR_125929  LOC101929595
27   chr6   65526036       65784345  NM_001142800           EYS
28   chr7   64031919       64160598  NM_001282360        ZNF107
29   chr7   64031919       64160598     NR_033245     LOC641746
30   chr7   64031919       64160598     NR_077227  LOC100128885
32   chr7   64031919       64160598     NR_106898       MIR6839
33   chr7  110977443      111149208  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88960100       89066323  NM_001099338      NUTM2A
1   chr10   88960100       89066323     NR_024397  NUTM2A-AS1
2   chr14   21786134       21908307  NM_001170629        CHD8
3   chr14   21786134       21908307     NM_007192     SUPT16H
4   chr14   21786134       21908307     NM_020366     RPGRIP1
6   chr14   21786134       21908307     NR_002916      SNORD8
7   chr14   21786134       21908307     NR_003029      SNORD9
8   chr14   47743607       47983070  NM_001113498       MDGA2
11   chr7   11013900       11437819     NM_014660       PHF14
12   chr7   11013900       11437819     NM_015204      THSD7A
14   chr7   88924494       89106380     NM_181646     ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11   25063502       25274560  NM_001009909          LUZP2
1   chr15   24395830       24497202     NR_026647          PWRN2
2   chr15   77882140       78000180  NM_001301186         LINGO1
12  chr15   77882140       78000180     NR_045123     LINGO1-AS1
13  chr15   77882140       78000180     NR_120361     LINGO1-AS2
14  chr16   14786832       15268079  NM_001270767          NTAN1
15  chr16   14786832       15268079  NM_001277323         NPIPA3
17  chr16   14786832       15268079  NM_001277324         NPIPA2
19  chr16   14786832       15268079  NM_001285445         PDXDC1
24  chr16   14786832       15268079  NM_001301064           RRN3
26  chr16   14786832       15268079     NM_006985         NPIPA1
27  chr16   14786832       15268079     NM_014287          NOMO1
28  chr16   14786832       15268079     NR_023387        ABCC6P2
29  chr16   14786832       15268079     NR_036140      MIR3179-1
30  chr16   14786832       15268079     NR_036141      MIR3180-1
31  chr16   14786832       15268079     NR_036142      MIR3180-2
32  chr16   14786832       15268079     NR_037466      MIR3180-4
33  chr16   14786832       15268079     NR_103772   LOC100288162
34  chr16   14786832       15268079     NR_106775      MIR6511B1
35  chr16   14786832       15268079     NR_106965      MIR6511B2
36  chr16   14786832       15268079     NR_106970      MIR6511A3
37  chr16   14786832       15268079     NR_107060      MIR6770-2
38  chr16   14786832       15268079     NR_123721  PKD1P6-NPIPP1
40  chr16   14786832       15268079     NR_125434   LOC100505915
41  chr16   14786832       15268079     NR_128713      MIR3670-4
42  chr16   14786832       15268079     NR_133651        PLA2G10
43  chr20   25379979       25558285  NM_001318226           NINL
44  chr20   25379979       25558285     NM_021067          GINS1
45  chr22   20566133       20961581  NM_001256523          ZNF74
46  chr22   20566133       20961581  NM_001293236          MED15
48  chr22   20566133       20961581     NM_153334         SCARF2
49  chr22   20566133       20961581     NR_033825         KLHL22
50  chr22   20566133       20961581     NR_136569      LOC729461
51  chr22   20566133       20961581     NR_136572   LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   31444923       31574001  NM_001304274        IMMP1L
1   chr11   31444923       31574001     NM_019040          ELP4
2   chr11   31444923       31574001     NM_181706       DNAJC24
3   chr13   55069296       56407085     NR_049804       MIR5007
4   chr15   28122386       29420908     NM_000275          OCA2
5   chr15   28122386       29420908  NM_001130414         APBA2
6   chr15   28122386       29420908  NM_001282468       GOLGA8M
8   chr15   28122386       29420908     NM_004667         HERC2
9   chr15   28122386       29420908     NM_015307      FAM189A1
10  chr15   28122386       29420908     NR_026589       WHAMMP2
11  chr15   28122386       29420908     NR_033351       GOLGA8F
13  chr15   28122386       29420908     NR_033353       GOLGA8G
15  chr15   28122386       29420908     NR_036443       HERC2P9
16  chr15   28122386       29420908     NR_036475  LOC100289656
17  chr15   28122386       29420908     NR_037599     PDCD6IPP2
18  chr15   28122386       29420908     NR_039734     MIR4509-3
20  chr15   28122386       29420908     NR_047567     GOLGA6L7P,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  152451667      152960713  NM_001024679   C1orf68
1    chr1  152451667      152960713  NM_001025231      KPRP
2    chr1  152451667      152960713  NM_001128600     LCE6A
3    chr1  152451667      152960713  NM_001276331     LCE1C
4    chr1  152451667      152960713     NM_005547       IVL
5    chr1  152451667      152960713     NM_005987    SPRR1A
6    chr1  152451667      152960713     NM_014357     LCE2B
7    chr1  152451667      152960713     NM_019060     CRCT1
8    chr1  152451667      152960713     NM_030663      SMCP
9    chr1  152451667      152960713     NM_032563     LCE3D
10   chr1  152451667      152960713     NM_173080     SPRR4
11   chr1  152451667      152960713     NM_178348     LCE1A
12   chr1  152451667      152960713     NM_178349     LCE1B
13   chr1  152451667      152960713     NM_178352     LCE1D
14   chr1  152451667      152960713     NM_178353     LCE1E
15   chr1  152451667      152960713     NM_178354     LCE1F
16   chr1  152451667      152960713     NM_178356     LCE4A
17   chr1  152451667      152960713     NM_178428     LCE2A
18   chr1  152451667      152960713     NM_178429     LCE2C
19   chr1  152451667      152960713     NM_178430     LCE2D
20   chr1  152451667      152960713     NM_178431     LCE3A
21   chr1  152451667      152960713     NM_178433     LCE3B
22   chr1  152451667      152960713     NM_178434     LCE3C
23   chr1  152451667      152960713     NM_178435     LCE3E
24   chr1  152451667      152960713     NM_178438     LCE5A
25  chr11   48307964       48516868  NM_001004702     OR4C3
26  chr11   48307964       48516868  NM_001004725     OR4S1
27  chr11   48307964       48516868  NM_001005512    OR4A47
28  chr11   48307964       48516868  NM_001005513    OR4C45
29  chr14   21870007       22540633  NM_001001912     OR4E2
30  chr14   21870007       22540633  NM_001005465    OR10G3
31  chr14   21870007       22540633  NM_001005466    OR10G2
32  chr14   21870007       22540633  NM_001163380     RAB2B
33  chr14   21870007       22540633  NM_001170629      CHD8
34  chr14   21870007       22540633  NM_001303523      TOX4
35  chr14   21870007       22540633  NM_001317107     OR4E1
36  chr14   21870007       22540633     NM_019852    METTL3
39  chr14   21870007       22540633     NR_111966     SALL2
41  chr15   65486423       65658188     NM_003613      CILP
42  chr15   65486423       65658188     NM_004884    IGDCC3
43  chr15   65486423       65658188     NM_017851    PARP16
44  chr21   17859029       17991030     NR_027790  MIR99AHG
46  chr21   17859029       17991030     NR_029480  MIRLET7C
47  chr21   17859029       17991030     NR_029514    MIR99A
48  chr21   17859029       17991030     NR_029694  MIR125B2
57   chr7   75855891       76102424  NM_001102594      DTX2
58   chr7   75855891       76102424  NM_001110199     SRRM3
59   chr7   75855891       76102424  NM_001110354       ZP3
60   chr7   75855891       76102424     NM_001540     HSPB1
62   chr7   75855891       76102424     NM_012479     YWHAG
63   chr7   75855891       76102424     NM_080744     SSC4D
64   chr7   75855891       76102424     NR_003262    FDPSP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72555134       72658801     NR_026836     TRHDE-AS1
2   chr14   21750470       21883022  NM_001170629          CHD8
3   chr14   21750470       21883022     NM_007192       SUPT16H
4   chr14   21750470       21883022     NM_020366       RPGRIP1
6   chr14   21750470       21883022     NR_002916        SNORD8
7   chr14   21750470       21883022     NR_003029        SNORD9
8   chr15   20673584       20817201  NM_001145004      GOLGA6L6
9   chr15   20673584       20817201     NR_027411      GOLGA8CP
10  chr15   20673584       20817201     NR_036432       HERC2P3
11  chr17   48044385       48620064     NM_000088        COL1A1
12  chr17   48044385       48620064  NM_001166131          EME1
13  chr17   48044385       48620064  NM_001168215        TMEM92
14  chr17   48044385       48620064  NM_001199898          PDK2
17  chr17   48044385       48620064  NM_001257359        SAMD14
18  chr17   48044385       48620064     NM_001267          CHAD
19  chr17   48044385       48620064  NM_001288968         ACSF2
20  chr17   48044385       48620064     NM_001934          DLX4
21  chr17   48044385       48620064     NM_002204         ITGA3
23  chr17   48044385       48620064     NM_005220          DLX3
24  chr17   48044385       48620064     NM_016504        MRPL27
25  chr17   48044385       48620064     NM_017957          EPN3
26  chr17   48044385       48620064     NM_018346         RSAD1
27  chr17   48044385       48620064     NM_018509        LRRC59
28  chr17   48044385       48620064     NM_022167         XYLT2
29  chr17   48044385       48620064     NM_032133       MYCBPAP
30  chr17   48044385       48620064     NM_032595       PPP1R9B
33  chr17   48044385       48620064     NR_024193         HILS1
34  chr17   48044385       48620064     NR_038230     LOC284080
36  chr17   48044385       48620064     NR_110806  LOC101927230
37  chr17   48044385       48620064     NR_125805    TMEM92-AS1
38  chr17   48044385       48620064     NR_135553          SGCA
39  chr17   48044385       48620064     NR_135675  LOC105371824,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   30196614       30449863     NM_000510          FSHB
1   chr11   30196614       30449863  NM_001145399        MPPED2
3   chr11   30196614       30449863     NM_152316       ARL14EP
4   chr11   83614102       83983361  NM_001142699          DLG2
8   chr14   21836811       21969711  NM_001163380         RAB2B
9   chr14   21836811       21969711  NM_001170629          CHD8
10  chr14   21836811       21969711  NM_001303523          TOX4
11  chr14   21836811       21969711     NM_007192       SUPT16H
12  chr14   21836811       21969711     NM_019852        METTL3
15  chr14   21836811       21969711     NR_002916        SNORD8
16  chr14   21836811       21969711     NR_003029        SNORD9
17   chr2  133066781      133168547  NM_001304449        ZNF806
18   chr2  133066781      133168547     NR_135203       FAM201B
19   chr6   90254219       90751256  NM_001137667      CASP8AP2
20   chr6   90254219       90751256  NM_001170794         BACH2
21   chr6   90254219       90751256  NM_001242809        ANKRD6
24   chr6   90254219       90751256     NM_014611          MDN1
25   chr6   90254219       90751256     NM_020466         LYRM2
26   chr6   90254219       90751256     NM_032602         GJA10
28   chr6   90254219       90751256     NR_111915  LOC101929057
29   chr8    8383360        8666982     NM_004225        MFHAS1
30   chr8    8383360        8666982     NM_194284        CLDN23,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  143730075      143834759  NM_001123068    PPIAL4G
1    chr1  143730075      143834759     NR_104014  LINC01138
2   chr13  102897946      103010482  NM_001321932      FGF14
9   chr13  102897946      103010482     NR_036486  FGF14-IT1
10  chr14   27014675       27125544     NM_002515      NOVA1
12   chr3  145829465      145952394     NM_000935      PLOD2
13   chr3  145829465      145952394  NM_001128304     PLSCR4
15   chr9   39065192       39178927     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143690381      144141746  NM_001123068       PPIAL4G
1    chr1  143690381      144141746  NM_001287385        FAM72C
2    chr1  143690381      144141746  NM_001345942        FAM72D
6    chr1  143690381      144141746     NR_104014     LINC01138
7    chr1  143690381      144141746     NR_111930  LOC100132057
9    chr2   78154606       78263005     NR_024342        SNAR-H
10   chr2   78154606       78263005     NR_110288  LOC101927967
11  chr20   14657721       14768349     NM_080676       MACROD2
12  chr22   19025495       19129781  NM_001184781         DGCR2
13  chr22   19025495       19129781     NM_022719        DGCR14
14  chr22   19025495       19129781     NM_053006         TSSK2
15  chr22   19025495       19129781     NR_024157        DGCR11
16   chr8    4143433        4385483     NM_033225         CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12781983       13280453  NM_001009611       PRAMEF4
1    chr1   12781983       13280453  NM_001010889       PRAMEF6
2    chr1   12781983       13280453  NM_001010890       PRAMEF9
3    chr1   12781983       13280453  NM_001012276       PRAMEF8
4    chr1   12781983       13280453  NM_001013407       PRAMEF5
5    chr1   12781983       13280453  NM_001013631      HNRNPCL1
6    chr1   12781983       13280453  NM_001080830      PRAMEF12
7    chr1   12781983       13280453  NM_001099850      PRAMEF18
8    chr1   12781983       13280453  NM_001100631      PRAMEF22
9    chr1   12781983       13280453  NM_001103170       AADACL3
10   chr1   12781983       13280453  NM_001136561      HNRNPCL2
11   chr1   12781983       13280453  NM_001146181      HNRNPCL3
12   chr1   12781983       13280453  NM_001146344      PRAMEF11
13   chr1   12781983       13280453  NM_001294139       PRAMEF1
14   chr1   12781983       13280453  NM_001302551      HNRNPCL4
15   chr1   12781983       13280453  NM_001306072      PRAMEF26
16   chr1   12781983       13280453  NM_001310134      PRAMEF25
18   chr1   12781983       13280453     NM_023014       PRAMEF2
19   chr1   12781983       13280453     NM_152290      C1orf158
20   chr1   12781983       13280453     NR_111945     PRAMEF36P
22  chr14   21667369       21829147     NM_007192       SUPT16H
23  chr14   21667369       21829147     NM_020366       RPGRIP1
24  chr14   21667369       21829147     NM_031314        HNRNPC
25  chr14   21667369       21829147     NR_038970     LINC00641
27   chr6    5123644        5746101  NM_001164840         LYRM4
29   chr6    5123644        5746101  NM_001318872         FARS2
32   chr6    5123644        5746101     NR_037462       MIR3691
33   chr6    5123644        5746101     NR_110842  LOC101927950
34   chr6    5123644        5746101     NR_125846  LOC101927972
35   chr6    5123644        5746101     NR_126015     LYRM4-AS1
37   chr7  110671557      111336088  NM_001099658         LRRN3
38   chr7  110671557      111336088  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   81774638       82026871     NR_120571  MIR4300HG
1   chr14   42109712       42220253  NM_001346175      LRFN5
2    chr2   51136192       51352325  NM_001330079      NRXN1
5    chr2   51136192       51352325     NR_135237  LOC730100
6    chr2  133812130      133983629     NM_207363     NCKAP5
7   chr22   18968245       19086261  NM_001184781      DGCR2
8   chr22   18968245       19086261     NR_002733      DGCR5
9   chr22   18968245       19086261     NR_024157     DGCR11
10  chr22   18968245       19086261     NR_024159      DGCR9
11  chr22   18968245       19086261     NR_026651     DGCR10
13   chr3     684178         791533     NR_110118  LINC01266
14   chr4  189260273      189390904     NR_033869  LINC01060
15   chr7   88241530       88569161     NM_152706    C7orf62
16   chr7   88241530       88569161     NM_181646    ZNF804B,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr14   21792612       21921795  NM_001170629         CHD8
1  chr14   21792612       21921795     NM_007192      SUPT16H
2  chr14   21792612       21921795     NM_020366      RPGRIP1
4  chr14   21792612       21921795     NR_002916       SNORD8
5  chr14   21792612       21921795     NR_003029       SNORD9
6  chr20   14905665       15086635     NM_080676      MACROD2
7  chr20   14905665       15086635     NR_037841  MACROD2-AS1
9   chr9   39116381       39239310     NM_033655      CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67853995       68021501  NM_001127384     CTNNA3
2   chr14   21869481       22608712  NM_001001912      OR4E2
3   chr14   21869481       22608712  NM_001005465     OR10G3
4   chr14   21869481       22608712  NM_001005466     OR10G2
5   chr14   21869481       22608712  NM_001163380      RAB2B
6   chr14   21869481       22608712  NM_001170629       CHD8
7   chr14   21869481       22608712  NM_001303523       TOX4
8   chr14   21869481       22608712  NM_001317107      OR4E1
9   chr14   21869481       22608712     NM_019852     METTL3
12  chr14   21869481       22608712     NR_111966      SALL2
14  chr16   78985372       79436737     NM_016373       WWOX
15   chr3  197218217      197738778     NM_000996     RPL35A
16   chr3  197218217      197738778  NM_001011537     FYTTD1
17   chr3  197218217      197738778  NM_001145642      RUBCN
19   chr3  197218217      197738778  NM_001323027       IQCG
24   chr3  197218217      197738778     NM_032773      LRCH3
25   chr3  197218217      197738778     NM_033029       LMLN
26   chr3  197218217      197738778     NM_203314       BDH1
28   chr3  197218217      197738778     NR_003266  LOC220729
30   chr3  197218217      197738778     NR_030627     MIR922,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  102395289      102869295     NR_110211     OLFM3
1   chr14   21861503       22164244  NM_001001912     OR4E2
2   chr14   21861503       22164244  NM_001005465    OR10G3
3   chr14   21861503       22164244  NM_001005466    OR10G2
4   chr14   21861503       22164244  NM_001163380     RAB2B
5   chr14   21861503       22164244  NM_001170629      CHD8
6   chr14   21861503       22164244  NM_001303523      TOX4
7   chr14   21861503       22164244  NM_001317107     OR4E1
8   chr14   21861503       22164244     NM_019852    METTL3
11  chr14   21861503       22164244     NR_002916    SNORD8
12  chr14   21861503       22164244     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr19   47845102       47986562  NM_001009813     MEIS3
1   chr19   47845102       47986562  NM_001271749     C5AR2
3   chr19   47845102       47986562  NM_001291296      KPTN
6   chr19   47845102       47986562     NM_014681     DHX34
7   chr19   47845102       47986562     NM_015063    SLC8A2
9   chr22   19898520       20030932     NM_000754      COMT
12  chr22   19898520       20030932  NM_001282512    TXNRD2
13  chr22   19898520       20030932  NM_001283116    TANGO2
16  chr22   19898520       20030932     NM_001670     ARVCF
19  chr22   19898520       20030932     NR_029706    MIR185
20  chr22   19898520       20030932     NR_039918   MIR4761
21   chr4   88590666       88900514     NM_000582      SPP1
22   chr4   88590666       88900514  NM_001184694      MEPE
24   chr4   88590666       88900514     NM_004967      IBSP
26   chr9  102059531      102225631     NR_102270      NAMA,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145118502      145443038  NM_001277444         NBPF9
1    chr1  145118502      145443038  NM_001278267        NBPF20
2    chr1  145118502      145443038  NM_001302371        NBPF10
3    chr1  145118502      145443038  NM_001313972         TXNIP
5    chr1  145118502      145443038     NM_145277          HFE2
6    chr1  145118502      145443038     NM_203458      NOTCH2NL
7    chr1  145118502      145443038     NR_104217       NBPF25P
8    chr1  145118502      145443038     NR_125967  LOC101928979
9    chr1  244992226      245275719  NM_001143943        EFCAB2
11   chr1  244992226      245275719  NM_001312871         COX20
13   chr1  244992226      245275719     NM_004501        HNRNPU
16   chr1  244992226      245275719     NR_111907  LOC101928068
17   chr1  244992226      245275719     NR_132782      SNORA100
18  chr14   21830784       22038140  NM_001005465        OR10G3
19  chr14   21830784       22038140  NM_001163380         RAB2B
20  chr14   21830784       22038140  NM_001170629          CHD8
21  chr14   21830784       22038140  NM_001303523          TOX4
22  chr14   21830784       22038140     NM_007192       SUPT16H
23  chr14   21830784       22038140     NM_019852        METTL3
26  chr14   21830784       22038140     NR_002916        SNORD8
27  chr14   21830784       22038140     NR_003029        SNORD9
28  chr14   21830784       22038140     NR_111966         SALL2
30  chr16   18443143       18546995  NM_001004060         NOMO2
31  chr16   18443143       18546995     NR_036140     MIR3179-1
32  chr16   18443143       18546995     NR_036142     MIR3180-2
33  chr16   18443143       18546995     NR_036144     MIR3180-3
34  chr16   18443143       18546995     NR_037442     MIR3670-1
35  chr16   18443143       18546995     NR_107060     MIR6770-2
36  chr18    8144461        8670190  NM_001025300         RAB12
37  chr18    8144461        8670190     NM_002845         PTPRM
38  chr18    8144461        8670190     NR_024419  LOC100192426
39  chr22   20107334       20228464  NM_001243537       CCDC188
40  chr22   20107334       20228464  NM_001278639        RANBP1
43  chr22   20107334       20228464     NM_013373        ZDHHC8
44  chr22   20107334       20228464     NR_026919     LINC00896
45  chr22   20107334       20228464     NR_038460     LOC284865
46   chr3  163721497      163905811     NR_031665       MIR1263
47   chr6  162655723      162877504     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   14802914       15067184  NM_001277323        NPIPA3
2   chr16   14802914       15067184  NM_001277324        NPIPA2
4   chr16   14802914       15067184     NM_006985        NPIPA1
5   chr16   14802914       15067184     NM_014287         NOMO1
6   chr16   14802914       15067184     NR_023387       ABCC6P2
7   chr16   14802914       15067184     NR_036140     MIR3179-1
8   chr16   14802914       15067184     NR_036141     MIR3180-1
9   chr16   14802914       15067184     NR_036142     MIR3180-2
10  chr16   14802914       15067184     NR_103772  LOC100288162
11  chr16   14802914       15067184     NR_106970     MIR6511A3
12  chr16   14802914       15067184     NR_107060     MIR6770-2
13  chr16   14802914       15067184     NR_128713     MIR3670-4
14  chr16   68581473       68696427  NM_001305204         ZFP90
16  chr16   68581473       68696427  NM_001317195          CDH3
17   chr2  236661613      236779862  NM_001244888         AGAP1
19   chr7   12179974       12293305  NM_001134232      TMEM106B
20   chr7  111276778      111432787     NM_014705         DOCK4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21902696       22224971  NM_001001912         OR4E2
1   chr14   21902696       22224971  NM_001005465        OR10G3
2   chr14   21902696       22224971  NM_001005466        OR10G2
3   chr14   21902696       22224971  NM_001163380         RAB2B
4   chr14   21902696       22224971  NM_001303523          TOX4
5   chr14   21902696       22224971  NM_001317107         OR4E1
6   chr14   21902696       22224971     NM_019852        METTL3
7   chr14   21902696       22224971     NM_020920          CHD8
9   chr14   21902696       22224971     NR_111966         SALL2
11  chr16   68745488       68854571  NM_001317184          CDH1
12  chr16   68745488       68854571     NR_106988     MIR7641-2
13   chr3  176597103      176783027  NM_001321193       TBL1XR1
15   chr4   93244032       93457597     NM_001510         GRID2
16   chr8     127589         433777  NM_001042415        ZNF596
21   chr8     127589         433777     NM_012173        FBXO25
22   chr8     127589         433777     NR_003572     RPL23AP53
23   chr8     127589         433777     NR_103537        FAM87A
24   chr9   67141746       67392666     NR_002817        AQP7P1
25   chr9   67141746       67392666     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    1979237        2186211     NR_040253     LINC00700
1   chr10    1979237        2186211     NR_106720       MIR6072
2   chr10   67594112       67766414  NM_001127384        CTNNA3
4   chr16   21467713       22065120  NM_001077180        METTL9
5   chr16   21467713       22065120  NM_001161683          OTOA
6   chr16   21467713       22065120  NM_001164579      C16orf52
8   chr16   21467713       22065120  NM_001310148        NPIPB4
9   chr16   21467713       22065120     NM_003366        UQCRC2
10  chr16   21467713       22065120     NM_005849         IGSF6
13  chr16   21467713       22065120     NM_173806         PDZD9
14  chr16   21467713       22065120     NR_002594      SLC7A5P2
15  chr16   21467713       22065120     NR_003370        RRN3P1
16  chr16   21467713       22065120     NR_027155        SMG1P3
17  chr16   21467713       22065120     NR_049833     MIR3680-2
18  chr16   21467713       22065120     NR_110930  LOC101927814,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   14718790       15269912  NM_001134477           PARN
1   chr16   14718790       15269912  NM_001270767          NTAN1
2   chr16   14718790       15269912  NM_001277323         NPIPA3
4   chr16   14718790       15269912  NM_001277324         NPIPA2
6   chr16   14718790       15269912  NM_001285445         PDXDC1
11  chr16   14718790       15269912  NM_001301064           RRN3
13  chr16   14718790       15269912     NM_006985         NPIPA1
14  chr16   14718790       15269912     NM_014287          NOMO1
15  chr16   14718790       15269912     NM_016561           BFAR
16  chr16   14718790       15269912     NR_023387        ABCC6P2
17  chr16   14718790       15269912     NR_036140      MIR3179-1
18  chr16   14718790       15269912     NR_036141      MIR3180-1
19  chr16   14718790       15269912     NR_036142      MIR3180-2
20  chr16   14718790       15269912     NR_037466      MIR3180-4
21  chr16   14718790       15269912     NR_103772   LOC100288162
22  chr16   14718790       15269912     NR_106775      MIR6511B1
23  chr16   14718790       15269912     NR_106965      MIR6511B2
24  chr16   14718790       15269912     NR_106970      MIR6511A3
25  chr16   14718790       15269912     NR_107060      MIR6770-2
26  chr16   14718790       15269912     NR_123721  PKD1P6-NPIPP1
28  chr16   14718790       15269912     NR_125434   LOC100505915
29  chr16   14718790       15269912     NR_128713      MIR3670-4
30  chr16   14718790       15269912     NR_133651        PLA2G10
31   chr8    8182082        8624678  NM_001080826          PRAG1
32   chr8    8182082        8624678     NM_194284         CLDN23,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  171278780      171417708     NM_002022          FMO4
1    chr1  171278780      171417708     NR_002719        TOP1P1
2    chr1  243474568      243663699  NM_001206729          AKT3
4    chr1  243474568      243663699     NM_006642       SDCCAG8
6    chr1  243474568      243663699     NR_039824       MIR4677
7   chr14   47914565       48157569  NM_001113498         MDGA2
8   chr15   28767056       29319923  NM_001130414         APBA2
9   chr15   28767056       29319923  NM_001282468       GOLGA8M
10  chr15   28767056       29319923     NR_026589       WHAMMP2
11  chr15   28767056       29319923     NR_033351       GOLGA8F
12  chr15   28767056       29319923     NR_033353       GOLGA8G
13  chr15   28767056       29319923     NR_036443       HERC2P9
14  chr15   28767056       29319923     NR_036475  LOC100289656
15  chr15   28767056       29319923     NR_037599     PDCD6IPP2
16  chr15   28767056       29319923     NR_047567     GOLGA6L7P
17  chr20   14831586       15052135     NM_080676       MACROD2
18  chr20   14831586       15052135     NR_037841   MACROD2-AS1
20   chr8  143420670      143535288  NM_001291931       TSNARE1,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr22   17224494       17332725  NM_175878          XKR3
1  chr22   17224494       17332725  NR_003607       HSFY1P1
2  chr22   17224494       17332725  NR_134584  LOC101929350
3   chr5  117428224      117540241  NR_104997  LOC102467224,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21896997       22448119  NM_001001912      OR4E2
1   chr14   21896997       22448119  NM_001005465     OR10G3
2   chr14   21896997       22448119  NM_001005466     OR10G2
3   chr14   21896997       22448119  NM_001163380      RAB2B
4   chr14   21896997       22448119  NM_001170629       CHD8
5   chr14   21896997       22448119  NM_001303523       TOX4
6   chr14   21896997       22448119  NM_001317107      OR4E1
7   chr14   21896997       22448119     NM_019852     METTL3
10  chr14   21896997       22448119     NR_111966      SALL2
12   chr3  196784471      196897741  NM_001204386       DLG1
15   chr4   69226924       69408039     NM_001077    UGT2B17
16   chr4   69226924       69408039     NM_014058  TMPRSS11E
17   chr7    8660024        8769889     NM_152745      NXPH1
18   chr9  116348831      116450851  NM_001276260       RGS3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21805184       21915385  NM_001170629       CHD8
1   chr14   21805184       21915385     NM_007192    SUPT16H
2   chr14   21805184       21915385     NM_020366    RPGRIP1
4   chr14   21805184       21915385     NR_002916     SNORD8
5   chr14   21805184       21915385     NR_003029     SNORD9
6   chr17   21375384       21543288  NM_001113434   C17orf51
7   chr19   33764012       34227499     NM_000285       PEPD
8   chr19   33764012       34227499  NM_001127895      CHST8
10  chr19   33764012       34227499  NM_001252296      CEBPG
11  chr19   33764012       34227499  NM_001285829      CEBPA
14  chr19   33764012       34227499     NR_026887  CEBPA-AS1
15   chr4   69305153       69409005     NM_001077    UGT2B17
16   chr4   69305153       69409005     NM_014058  TMPRSS11E
17   chr4  169222124      169594698  NM_001012967     DDX60L
18   chr4  169222124      169594698  NM_001166108      PALLD
21   chr4  169222124      169594698     NM_017631      DDX60
22   chr6  146413859      146517126  NM_001278064       GRM1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67289108       67450220     NM_000695       ALDH3B2
1   chr11   67289108       67450220     NM_000852         GSTP1
3   chr11   67289108       67450220  NM_001166102        NDUFV1
4   chr11   67289108       67450220  NM_001243750         NUDT8
5   chr11   67289108       67450220  NM_001318496         CABP2
6   chr11   67289108       67450220     NM_005995         TBX10
7   chr11   67289108       67450220     NM_080658          ACY3
9   chr11   67289108       67450220     NR_033791        DOC2GP
10  chr11   67289108       67450220     NR_130935      C11orf72
11  chr12  128539817      128740915     NR_039720      MIR4419B
12  chr12  128539817      128740915     NR_104647  LOC100996679
13  chr12  128539817      128740915     NR_104648  LOC101927694
14  chr14   21780644       22165480  NM_001001912         OR4E2
15  chr14   21780644       22165480  NM_001005465        OR10G3
16  chr14   21780644       22165480  NM_001005466        OR10G2
17  chr14   21780644       22165480  NM_001163380         RAB2B
18  chr14   21780644       22165480  NM_001170629          CHD8
19  chr14   21780644       22165480  NM_001303523          TOX4
20  chr14   21780644       22165480  NM_001317107         OR4E1
21  chr14   21780644       22165480     NM_007192       SUPT16H
22  chr14   21780644       22165480     NM_019852        METTL3
23  chr14   21780644       22165480     NM_020366       RPGRIP1
26  chr14   21780644       22165480     NR_002916        SNORD8
27  chr14   21780644       22165480     NR_003029        SNORD9
28  chr14   21780644       22165480     NR_111966         SALL2
30  chr18   67126872       67667917  NM_001303618         CD226
32  chr18   67126872       67667917     NM_152721          DOK6
33  chr18   67126872       67667917     NR_134579  LOC105372179
34   chr9   41918908       42072761     NR_003670        FGF7P3
35   chr9   41918908       42072761     NR_015363         GLIDR
38   chr9   41918908       42072761     NR_126048  LOC102724238
39   chr9   41918908       42072761     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143427281      143945500  NM_001123068       PPIAL4G
1    chr1  143427281      143945500  NM_001287385        FAM72C
2    chr1  143427281      143945500  NM_001345942        FAM72D
6    chr1  143427281      143945500     NR_104014     LINC01138
7    chr1  143427281      143945500     NR_106967       MIR6077
8    chr1  143427281      143945500     NR_111930  LOC100132057
10  chr14   19888227       20108174  NM_001145442         POTEM
11  chr14   19888227       20108174     NR_073459       BMS1P18
12  chr14   19888227       20108174     NR_110505  LOC100508046
13  chr14   19888227       20108174     NR_110526       DUXAP10
14  chr14   19888227       20108174     NR_122111     LINC01296
16  chr14   19888227       20108174     NR_133911       BMS1P22
17  chr14   42095766       42383662  NM_001346175         LRFN5
18  chr17   14087243       14307800  NM_001007530        CDRT15
19  chr17   14087243       14307800     NM_001303         COX10
20  chr17   14087243       14307800     NM_006041      HS3ST3B1
21  chr17   14087243       14307800     NR_026880      MGC12916
22   chr2   25158206       25263642  NM_001198559       DNAJC27
23   chr2   25158206       25263642     NR_034113   DNAJC27-AS1
24   chr2   49086017       49202112     NM_181446          FSHR
25   chr9   44324622       45181257     NR_027421        FAM27C
26   chr9   44324622       45181257     NR_121564  LOC101927827
27   chr9   44324622       45181257     NR_121606  LOC102723709
28   chr9   44324622       45181257     NR_126050  LOC103908605
29   chr9   44324622       45181257     NR_144466  LOC105379807,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   16634497       16790846  NM_001114600      SZRD1
1    chr1   16634497       16790846  NM_001145277     NECAP2
2    chr1   16634497       16790846     NM_018994     FBXO42
3    chr1   16634497       16790846     NM_198546    SPATA21
4   chr14   21854996       21957016  NM_001163380      RAB2B
5   chr14   21854996       21957016  NM_001170629       CHD8
6   chr14   21854996       21957016  NM_001303523       TOX4
9   chr14   21854996       21957016     NR_002916     SNORD8
10  chr14   21854996       21957016     NR_003029     SNORD9
11   chr9   30340301       30467312     NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   29554317       29963182  NM_001030288           SPN
1   chr16   29554317       29963182  NM_001114099        SEZ6L2
2   chr16   29554317       29963182  NM_001256269         KIF22
4   chr16   29554317       29963182  NM_001256443         PRRT2
5   chr16   29554317       29963182  NM_001276275           MAZ
6   chr16   29554317       29963182  NM_001286585         CDIPT
7   chr16   29554317       29963182  NM_001293204           MVP
8   chr16   29554317       29963182  NM_001318249          QPRT
12  chr16   29554317       29963182     NM_024516         PAGR1
13  chr16   29554317       29963182     NM_152338          ZG16
14  chr16   29554317       29963182     NM_175900      C16orf54
15  chr16   29554317       29963182     NM_178863        KCTD13
16  chr16   29554317       29963182     NM_181718        ASPHD1
17  chr16   29554317       29963182     NR_015396     CDIPT-AS1
19  chr16   29554317       29963182     NR_049833     MIR3680-2
20  chr16   29554317       29963182     NR_135305        SMG1P2
22   chr2  186222247      186623610     NM_173651         FSIP2
23   chr2  186222247      186623610     NR_110214  LOC101927196
26   chr5   17510305       18145027     NR_134286     LOC646241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21492069       21617614  NM_001077180        METTL9
2   chr16   21492069       21617614     NR_002594      SLC7A5P2
3   chr16   21492069       21617614     NR_027155        SMG1P3
4   chr16   21492069       21617614     NR_049833     MIR3680-2
5   chr16   21492069       21617614     NR_110930  LOC101927814
6   chr17      22338         227556  NM_001190411        RPH3AL
7   chr17      22338         227556     NM_003585         DOC2B
8   chr17      22338         227556     NR_040011  LOC100506388
9   chr17      22338         227556     NR_104420  LOC100506371
10   chr2  212970049      213214467  NM_001042599         ERBB4
11   chr7    6757139        6860575  NM_001099697      RSPH10B2
12   chr7    6757139        6860575     NM_198097         CCZ1B
13   chr7    6757139        6860575     NR_002217        PMS2CL
14   chr7   18546284       18663316  NM_001204144         HDAC9
23   chr7   81916540       82062061     NM_000722      CACNA2D1
25   chr9   67154571       67322860     NR_002817        AQP7P1
26   chr9   67154571       67322860     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16370774       17901380  NM_001004067         NOMO3
1   chr16   16370774       17901380  NM_001282511        NPIPA8
2   chr16   16370774       17901380     NM_022166         XYLT1
3   chr16   16370774       17901380     NR_036140     MIR3179-1
4   chr16   16370774       17901380     NR_036141     MIR3180-1
5   chr16   16370774       17901380     NR_036142     MIR3180-2
6   chr16   16370774       17901380     NR_036447        PKD1P1
7   chr16   16370774       17901380     NR_103772  LOC100288162
8   chr16   16370774       17901380     NR_106766     MIR6511A1
9   chr16   16370774       17901380     NR_106971     MIR6511A4
10  chr16   16370774       17901380     NR_107060     MIR6770-2
11  chr16   16370774       17901380     NR_128713     MIR3670-4
12  chr16   16370774       17901380     NR_135179  LOC102723692
13   chr4   69298469       69503422     NM_001077       UGT2B17
14   chr4   69298469       69503422     NM_014058     TMPRSS11E
15   chr8    2072166        2213215     NM_003970         MYOM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21798331       22386083  NM_001001912         OR4E2
1   chr14   21798331       22386083  NM_001005465        OR10G3
2   chr14   21798331       22386083  NM_001005466        OR10G2
3   chr14   21798331       22386083  NM_001163380         RAB2B
4   chr14   21798331       22386083  NM_001170629          CHD8
5   chr14   21798331       22386083  NM_001303523          TOX4
6   chr14   21798331       22386083  NM_001317107         OR4E1
7   chr14   21798331       22386083     NM_007192       SUPT16H
8   chr14   21798331       22386083     NM_019852        METTL3
9   chr14   21798331       22386083     NM_020366       RPGRIP1
12  chr14   21798331       22386083     NR_002916        SNORD8
13  chr14   21798331       22386083     NR_003029        SNORD9
14  chr14   21798331       22386083     NR_111966         SALL2
16  chr16   16398735       16637432  NM_001282511        NPIPA8
17  chr16   16398735       16637432     NR_036141     MIR3180-1
18  chr16   16398735       16637432     NR_036142     MIR3180-2
19  chr16   16398735       16637432     NR_036447        PKD1P1
20  chr16   16398735       16637432     NR_103772  LOC100288162
21  chr16   16398735       16637432     NR_106766     MIR6511A1
22  chr16   16398735       16637432     NR_106971     MIR6511A4
23  chr16   16398735       16637432     NR_107060     MIR6770-2
24  chr16   16398735       16637432     NR_128713     MIR3670-4
25   chr6  128678668      128792192  NM_001291982         PTPRK,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21926218       22054976  NM_001005465        OR10G3
1   chr14   21926218       22054976  NM_001163380         RAB2B
2   chr14   21926218       22054976  NM_001303523          TOX4
3   chr14   21926218       22054976     NM_019852        METTL3
5   chr14   21926218       22054976     NR_111966         SALL2
7   chr14   37620721       37742022  NM_001171170      SLC25A21
8   chr14   37620721       37742022  NM_001195296        MIPOL1
9   chr14   37620721       37742022     NR_033240  SLC25A21-AS1
10  chr14   47876922       48163325  NM_001113498         MDGA2
11  chr15   30272702       30425162  NM_001282472       GOLGA8J
12  chr15   30272702       30425162     NR_026859        ULK4P3
13   chr4   71368812       71880025     NM_000788           DCK
14   chr4   71368812       71880025  NM_001037442         RUFY3
15   chr4   71368812       71880025  NM_001098477         GRSF1
17   chr4   71368812       71880025  NM_001244766         MOB1B
19   chr4   71368812       71880025  NM_001286731          AMTN
24   chr4   71368812       71880025     NM_016519          AMBN
25   chr4   71368812       71880025     NM_020368          UTP3
26   chr4   71368812       71880025     NM_031889          ENAM
27   chr4   71368812       71880025     NM_144646        JCHAIN
28   chr5   59829716       59956727  NM_001145208       DEPDC1B
29   chr5   59829716       59956727     NR_024617         PART1
30   chr9   28668128       28821839  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  219963057      220119546     NR_002753       RNU5F-1
1    chr1  219963057      220119546     NR_046437      SLC30A10
2   chr11    4540499        4702381  NM_001004137        OR52M1
3   chr11    4540499        4702381  NM_001004751        OR51D1
4   chr11    4540499        4702381  NM_001005169        OR52I1
5   chr11    4540499        4702381  NM_001005170        OR52I2
6   chr11    4540499        4702381     NM_018073        TRIM68
7   chr11    4540499        4702381     NM_030774        OR51E2
8   chr11    4540499        4702381     NM_144663      C11orf40
9   chr11    4540499        4702381     NM_152430        OR51E1
10  chr14   21770487       21903315  NM_001170629          CHD8
11  chr14   21770487       21903315     NM_007192       SUPT16H
12  chr14   21770487       21903315     NM_020366       RPGRIP1
14  chr14   21770487       21903315     NR_002916        SNORD8
15  chr14   21770487       21903315     NR_003029        SNORD9
16  chr15   28700369       28834343     NR_033351       GOLGA8F
17  chr15   28700369       28834343     NR_033353       GOLGA8G
18  chr15   28700369       28834343     NR_039734     MIR4509-3
19  chr15   97771044       97924410     NR_120324  LOC101927286
20  chr17   47880614       48107835  NM_001077503          TAC4
21  chr17   47880614       48107835  NM_001199158          KAT7
22  chr17   47880614       48107835  NM_001242791      FLJ45513
23  chr17   47880614       48107835     NM_001934          DLX4
24  chr17   47880614       48107835     NM_005220          DLX3
26   chr2   46990948       47569622  NM_001163561       C2orf61
27   chr2   46990948       47569622  NM_001171506         MCFD2
30   chr2   46990948       47569622  NM_001288951         TTC7A
32   chr2   46990948       47569622  NM_001305624         CALM2
36   chr2   46990948       47569622     NR_024452     LINC01119
37   chr2   46990948       47569622     NR_034099     LINC01118
38   chr2   46990948       47569622     NR_110207  LOC101927043
40   chr7  110597103      110926405  NM_001099658         LRRN3
41   chr7  110597103      110926405  NM_001244606        IMMP2L
43   chr9   41474142       41677048  NM_001113541     SPATA31A5
44   chr9   41474142       41677048     NM_015667     SPATA31A7
45   chr9   41474142       41677048     NR_003528       ZNF658B
46   chr9   41474142       41677048     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21831956       22033373  NM_001163380         RAB2B
1   chr14   21831956       22033373  NM_001170629          CHD8
2   chr14   21831956       22033373  NM_001303523          TOX4
3   chr14   21831956       22033373     NM_007192       SUPT16H
4   chr14   21831956       22033373     NM_019852        METTL3
7   chr14   21831956       22033373     NR_002916        SNORD8
8   chr14   21831956       22033373     NR_003029        SNORD9
9   chr14   21831956       22033373     NR_111966         SALL2
11  chr17   78247798       78388751  NM_001256071        RNF213
13  chr17   78247798       78388751     NR_029376  LOC100294362
14   chr3   21268317       21468133     NM_024697       ZNF385D
15   chr3   21268317       21468133     NR_002311       VENTXP7
16   chr8  124949698      125255762  NM_001039112        FER1L6
17   chr8  124949698      125255762     NR_040044    FER1L6-AS1
18   chr8  124949698      125255762     NR_103547    FER1L6-AS2
19   chr8  124949698      125255762     NR_125420  LOC101927588
20   chr9   41856221       41965948     NR_003670        FGF7P3
21   chr9   41856221       41965948     NR_015363         GLIDR,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   26946788       27064868  NM_001191320        GABRB3
3  chr16   18297745       18501943  NM_001282511        NPIPA8
4  chr16   18297745       18501943     NR_036142     MIR3180-2
5  chr16   18297745       18501943     NR_036144     MIR3180-3
6  chr16   18297745       18501943     NR_037442     MIR3670-1
7  chr16   18297745       18501943     NR_103772  LOC100288162
8  chr16   18297745       18501943     NR_106971     MIR6511A4
9  chr16   18297745       18501943     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21667932       21906618  NM_001170629          CHD8
1   chr14   21667932       21906618     NM_007192       SUPT16H
2   chr14   21667932       21906618     NM_020366       RPGRIP1
4   chr14   21667932       21906618     NM_031314        HNRNPC
5   chr14   21667932       21906618     NR_002916        SNORD8
6   chr14   21667932       21906618     NR_003029        SNORD9
7   chr14   21667932       21906618     NR_038970     LINC00641
9   chr22   20072594       20339663  NM_001190326         DGCR8
10  chr22   20072594       20339663  NM_001243537       CCDC188
11  chr22   20072594       20339663  NM_001278639        RANBP1
14  chr22   20072594       20339663     NM_013373        ZDHHC8
15  chr22   20072594       20339663     NM_022727        TRMT2A
16  chr22   20072594       20339663     NM_023004         RTN4R
17  chr22   20072594       20339663     NM_033257        DGCR6L
18  chr22   20072594       20339663     NR_026919     LINC00896
19  chr22   20072594       20339663     NR_031618       MIR1286
20  chr22   20072594       20339663     NR_031706       MIR1306
21  chr22   20072594       20339663     NR_037412       MIR3618
22  chr22   20072594       20339663     NR_038460     LOC284865
23  chr22   20072594       20339663     NR_106874       MIR6816
24  chr22   20072594       20339663     NR_136560       FAM230A
25  chr22   20072594       20339663     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67153115       67310433  NM_001018070        CORO1B
1   chr11   67153115       67310433  NM_001078650       TMEM134
2   chr11   67153115       67310433  NM_001166222        CARNS1
3   chr11   67153115       67310433  NM_001243224         RAD9A
4   chr11   67153115       67310433  NM_001256508      TBC1D10C
5   chr11   67153115       67310433  NM_001300895         CABP4
7   chr11   67153115       67310433  NM_001302959           AIP
8   chr11   67153115       67310433  NM_001318496         CABP2
9   chr11   67153115       67310433     NM_002708        PPP1CA
10  chr11   67153115       67310433     NM_003952       RPS6KB2
13  chr11   67153115       67310433     NM_004910       PITPNM1
14  chr11   67153115       67310433     NM_005608       PTPRCAP
15  chr11   67153115       67310433     NM_005851       CDK2AP2
18  chr11   67153115       67310433     NM_206997        GPR152
19  chr11   67153115       67310433     NR_024469  LOC100130987
22  chr11   67153115       67310433     NR_106810       MIR6752
23  chr15   28588297       28699727     NR_033351       GOLGA8F
24  chr15   28588297       28699727     NR_033353       GOLGA8G
25  chr15   28588297       28699727     NR_039734     MIR4509-3
26  chr15   82733211       82854028  NM_001164465     GOLGA6L10
27  chr15   82733211       82854028  NM_001291420      GOLGA6L9
28  chr15   82733211       82854028     NR_026811     GOLGA2P10
29  chr15   82733211       82854028     NR_111943         RPS17
31  chr15   82733211       82854028     NR_111962    GOLGA6L17P
32   chr2  184586437      192317598     NM_000090        COL3A1
33   chr2  184586437      192317598     NM_000393        COL5A2
34   chr2  184586437      192317598     NM_000534          PMS1
35   chr2  184586437      192317598  NM_001042519       C2orf88
38   chr2  184586437      192317598  NM_001128928         INPP1
39   chr2  184586437      192317598  NM_001142645         NEMP2
..    ...        ...            ...           ...           ...
56   chr2  184586437      192317598     NM_007315         STAT1
57   chr2  184586437      192317598     NM_012223         MYO1B
58   chr2  184586437      192317598     NM_014362         HIBCH
59   chr2  184586437      192317598     NM_014585       SLC40A1
61   chr2  184586437      192317598     NM_016315         GULP1
62   chr2  184586437      192317598     NM_016467        ORMDL1
63   chr2  184586437      192317598     NM_017694         MFSD6
64   chr2  184586437      192317598     NM_018471        ZC3H15
65   chr2  184586437      192317598     NM_019048        ASNSD1
66   chr2  184586437      192317598     NM_022353       OSGEPL1
68   chr2  184586437      192317598     NM_052952         DIRC1
70   chr2  184586437      192317598     NM_144708         ANKAR
71   chr2  184586437      192317598     NM_173651         FSIP2
72   chr2  184586437      192317598     NM_177454       FAM171B
73   chr2  184586437      192317598     NM_182521        ZSWIM2
74   chr2  184586437      192317598     NM_194250       ZNF804A
75   chr2  184586437      192317598     NR_030287        MIR561
76   chr2  184586437      192317598     NR_031647      MIR1245A
77   chr2  184586437      192317598     NR_036076       MIR3129
78   chr2  184586437      192317598     NR_037401       MIR3606
79   chr2  184586437      192317598     NR_039638     MIR548AE1
80   chr2  184586437      192317598     NR_039947      MIR1245B
82   chr2  184586437      192317598     NR_102429   OSGEPL1-AS1
83   chr2  184586437      192317598     NR_110214  LOC101927196
86   chr2  184586437      192317598     NR_110218     LINC01473
87   chr2  184586437      192317598     NR_126396     LINC01090
88   chr2  184586437      192317598     NR_136318  LOC105373805
89   chr2  184586437      192317598     NR_136319  LOC105373782
90   chr2  184586437      192317598     NR_144453     FSIP2-AS1
92   chr5  106804206      106956562     NM_001962         EFNA5

[68 rows x 5 columns],   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2  186524780      186882074  NM_173651         FSIP2
1  chr2  186524780      186882074  NR_110214  LOC101927196
4  chr2  186524780      186882074  NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21862136       22135549  NM_001001912      OR4E2
1   chr14   21862136       22135549  NM_001005465     OR10G3
2   chr14   21862136       22135549  NM_001005466     OR10G2
3   chr14   21862136       22135549  NM_001163380      RAB2B
4   chr14   21862136       22135549  NM_001170629       CHD8
5   chr14   21862136       22135549  NM_001303523       TOX4
6   chr14   21862136       22135549     NM_019852     METTL3
9   chr14   21862136       22135549     NR_002916     SNORD8
10  chr14   21862136       22135549     NR_111966      SALL2
12  chr15   51488631       51662876     NM_031226    CYP19A1
13  chr15   51488631       51662876     NM_181789       GLDN
14  chr15   51488631       51662876     NR_039863    MIR4713
15  chr15   51488631       51662876     NR_107012  MIR7973-1
16  chr15   51488631       51662876     NR_107013  MIR7973-2
17   chr8   19817778       20157262     NM_000237        LPL
18   chr8   19817778       20157262  NM_001135691    SLC18A1
19   chr8   19817778       20157262     NM_001693   ATP6V1B2
20   chr8   19817778       20157262     NM_021020      LZTS1
21   chr8   19817778       20157262     NR_047509  LZTS1-AS1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  143718464      144839121  NM_001123068    PPIAL4G
1   chr1  143718464      144839121  NM_001135789    PPIAL4C
2   chr1  143718464      144839121  NM_001277444      NBPF9
3   chr1  143718464      144839121  NM_001278267     NBPF20
4   chr1  143718464      144839121  NM_001287385     FAM72C
5   chr1  143718464      144839121  NM_001345942     FAM72D
9   chr1  143718464      144839121     NR_003242     PFN1P2
10  chr1  143718464      144839121     NR_024511  LINC00623
12  chr1  143718464      144839121     NR_102405      NBPF8
13  chr1  143718464      144839121     NR_104014  LINC01138
14  chr1  143718464      144839121     NR_111953  LINC00869
16  chr3     288923         424627  NM_001253387       CHL1
19  chr3     288923         424627     NR_110739   CHL1-AS1
20  chr3   60185044       60374929  NM_001320899       FHIT
21  chr9   17218499       17421891  NM_001114395      CNTLN, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21928628       22386935  NM_001001912         OR4E2
1   chr14   21928628       22386935  NM_001005465        OR10G3
2   chr14   21928628       22386935  NM_001005466        OR10G2
3   chr14   21928628       22386935  NM_001163380         RAB2B
4   chr14   21928628       22386935  NM_001303523          TOX4
5   chr14   21928628       22386935  NM_001317107         OR4E1
6   chr14   21928628       22386935     NM_019852        METTL3
8   chr14   21928628       22386935     NR_111966         SALL2
10  chr15   25766880       25993694     NM_024490        ATP10A
11   chr2   75852147       77078262  NM_001201334         GCFC2
13   chr2   75852147       77078262  NM_001330370        LRRTM4
15   chr2   75852147       77078262     NM_014763        MRPL19
16  chr21   13418259       14974500     NR_026916    ANKRD30BP2
17  chr21   13418259       14974500     NR_036164     MIR3156-3
18  chr21   13418259       14974500     NR_110544  LOC102724188
19   chr4   71419346       71549604     NM_016519          AMBN
20   chr4   71419346       71549604     NM_031889          ENAM
21   chr4   71419346       71549604     NM_144646        JCHAIN
22   chr6    5147528        6468883     NM_000129         F13A1
23   chr6    5147528        6468883  NM_001164840         LYRM4
24   chr6    5147528        6468883  NM_001278710          NRN1
27   chr6    5147528        6468883  NM_001318872         FARS2
31   chr6    5147528        6468883     NR_026970      LY86-AS1
32   chr6    5147528        6468883     NR_037462       MIR3691
33   chr6    5147528        6468883     NR_049863       MIR5683
34   chr6    5147528        6468883     NR_107007       MIR7853
35   chr6    5147528        6468883     NR_110842  LOC101927950
36   chr6    5147528        6468883     NR_125846  LOC101927972
37   chr6    5147528        6468883     NR_126015     LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   86125420       86389109     NM_017953        ZNHIT6
1    chr1   86125420       86389109     NM_152890       COL24A1
2   chr12   85465177       85598427  NM_001079910        LRRIQ1
3   chr14   21811441       21968712  NM_001163380         RAB2B
4   chr14   21811441       21968712  NM_001170629          CHD8
5   chr14   21811441       21968712  NM_001303523          TOX4
6   chr14   21811441       21968712     NM_007192       SUPT16H
7   chr14   21811441       21968712     NM_019852        METTL3
8   chr14   21811441       21968712     NM_020366       RPGRIP1
11  chr14   21811441       21968712     NR_002916        SNORD8
12  chr14   21811441       21968712     NR_003029        SNORD9
13  chr17     313732        1565564  NM_001080779         MYO1C
15  chr17     313732        1565564     NM_001092           ABR
16  chr17     313732        1565564  NM_001128159         VPS53
18  chr17     313732        1565564  NM_001164405        BHLHA9
19  chr17     313732        1565564  NM_001205319           NXN
22  chr17     313732        1565564  NM_001284498       SLC43A2
24  chr17     313732        1565564  NM_001317947          MRM3
25  chr17     313732        1565564  NM_001318008        FAM57A
29  chr17     313732        1565564     NM_005206           CRK
30  chr17     313732        1565564     NM_006224        PITPNA
31  chr17     313732        1565564     NM_006445         PRPF8
32  chr17     313732        1565564     NM_006761         YWHAE
33  chr17     313732        1565564     NM_013337        TIMM22
34  chr17     313732        1565564     NM_015721        GEMIN4
35  chr17     313732        1565564     NM_016080         GLOD4
36  chr17     313732        1565564     NM_016532        INPP5K
40  chr17     313732        1565564     NM_031430          RILP
43  chr17     313732        1565564     NM_172367         TUSC5
44  chr17     313732        1565564     NR_024120        DBIL5P
45  chr17     313732        1565564     NR_028075        SCARF1
46  chr17     313732        1565564     NR_028514    PITPNA-AS1
47  chr17     313732        1565564     NR_036148       MIR3183
48  chr17     313732        1565564     NR_135633  LOC101927727,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244974021      245142307  NM_001143943        EFCAB2
2    chr1  244974021      245142307  NM_001312871         COX20
4    chr1  244974021      245142307     NM_004501        HNRNPU
7    chr1  244974021      245142307     NR_111907  LOC101928068
8    chr1  244974021      245142307     NR_132782      SNORA100
9   chr16   68623067       68725294  NM_001317195          CDH3
10   chr2  110175458      110384382  NM_001099289        SH3RF3
11   chr2  110175458      110384382  NM_001321504        SEPT10
13   chr2  110175458      110384382     NM_023016        SOWAHC
14  chr20   14817257       14990426     NM_080676       MACROD2
15  chr20   14817257       14990426     NR_037841   MACROD2-AS1
17   chr3    1179316        1338226  NM_001289081         CNTN6
18   chr7  117499247      117637145     NM_033427       CTTNBP2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   81443911       81544028  NM_001278495       NUTM2B
1   chr10   81443911       81544028     NR_027512      BEND3P3
2   chr10   81443911       81544028     NR_120611   NUTM2B-AS1
4   chr15   21076734       21182074     NR_028506        NF1P2
5   chr15   21076734       21182074     NR_040094    LINC01193
6   chr15   21076734       21182074     NR_049895    MIR5701-2
7    chr2   97331118       97461180  NM_001293083       FER1L5
8    chr2   97331118       97461180  NM_001322354       LMAN2L
9    chr2   97331118       97461180     NM_020184        CNNM4
11  chr20   14744959       14893026     NM_080676      MACROD2
12  chr20   14744959       14893026     NR_037841  MACROD2-AS1
14  chr22   17265852       17368079     NM_175878         XKR3
15  chr22   17265852       17368079     NR_003607      HSFY1P1
16   chr7  110657631      110824994  NM_001099658        LRRN3
17   chr7  110657631      110824994  NM_001244606       IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr11     700429         857064     NM_001004           RPLP2
1   chr11     700429         857064  NM_001025234          TSPAN4
4   chr11     700429         857064  NM_001039490           CD151
5   chr11     700429         857064  NM_001042463          TMEM80
6   chr11     700429         857064  NM_001191060        SLC25A22
9   chr11     700429         857064  NM_001286606         CRACR2B
10  chr11     700429         857064  NM_001293167           PANO1
11  chr11     700429         857064  NM_001318824           PDDC1
13  chr11     700429         857064     NM_006755          TALDO1
14  chr11     700429         857064     NM_016564           CEND1
15  chr11     700429         857064     NM_020376          PNPLA2
16  chr11     700429         857064     NM_021128          POLR2L
17  chr11     700429         857064     NM_022772          EPS8L2
19  chr11     700429         857064     NM_145886           PIDD1
20  chr11     700429         857064     NR_002585         SNORA52
21  chr11     700429         857064     NR_126342       LOC171391
22  chr12   16328336       16624841  NM_001170798         SLC15A5
23  chr12   16328336       16624841  NM_001267598           MGST1
28  chr14   21811145       21982567  NM_001163380           RAB2B
29  chr14   21811145       21982567  NM_001170629            CHD8
30  chr14   21811145       21982567  NM_001303523            TOX4
31  chr14   21811145       21982567     NM_007192         SUPT16H
32  chr14   21811145       21982567     NM_019852          METTL3
33  chr14   21811145       21982567     NM_020366         RPGRIP1
36  chr14   21811145       21982567     NR_002916          SNORD8
37  chr14   21811145       21982567     NR_003029          SNORD9
38  chr15   43961982       44112668  NM_001018108           SERF2
42  chr15   43961982       44112668  NM_001199885            HYPK
43  chr15   43961982       44112668  NM_001258031         SERINC4
44  chr15   43961982       44112668  NM_001321927          CKMT1A
47  chr15   43961982       44112668     NM_005313           PDIA3
48  chr15   43961982       44112668     NM_005926           MFAP1
49  chr15   43961982       44112668     NM_025165            ELL3
50  chr15   43961982       44112668     NR_002318      CATSPER2P1
51  chr15   43961982       44112668     NR_031695         MIR1282
52  chr15   43961982       44112668     NR_037673  SERF2-C15ORF63
54  chr16   76611162       76735147     NR_110934    LOC101928203,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21819319       21965684  NM_001163380     RAB2B
1  chr14   21819319       21965684  NM_001170629      CHD8
2  chr14   21819319       21965684  NM_001303523      TOX4
3  chr14   21819319       21965684     NM_007192   SUPT16H
4  chr14   21819319       21965684     NM_020366   RPGRIP1
7  chr14   21819319       21965684     NR_002916    SNORD8
8  chr14   21819319       21965684     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21867655       22011539  NM_001163380     RAB2B
1   chr14   21867655       22011539  NM_001170629      CHD8
2   chr14   21867655       22011539  NM_001303523      TOX4
3   chr14   21867655       22011539     NM_019852    METTL3
6   chr14   21867655       22011539     NR_111966     SALL2
8    chr7   64102511       64230500  NM_001282360    ZNF107
10   chr7   64102511       64230500     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr13   63171638       63500181     NR_047029      LINC00448
3   chr16   29535175       30763517     NM_000034          ALDOA
4   chr16   29535175       30763517     NM_000294          PHKG2
5   chr16   29535175       30763517  NM_001014999          SLX1A
6   chr16   29535175       30763517  NM_001017390        SULT1A4
7   chr16   29535175       30763517  NM_001024683         ZNF688
8   chr16   29535175       30763517  NM_001030288            SPN
9   chr16   29535175       30763517  NM_001031827          BOLA2
10  chr16   29535175       30763517  NM_001040056          MAPK3
11  chr16   29535175       30763517  NM_001083613        TMEM219
12  chr16   29535175       30763517  NM_001105079           FBRS
13  chr16   29535175       30763517  NM_001109659       C16orf92
15  chr16   29535175       30763517  NM_001114099         SEZ6L2
16  chr16   29535175       30763517  NM_001114380          ITGAL
18  chr16   29535175       30763517  NM_001142305         ZNF771
19  chr16   29535175       30763517  NM_001145524          YPEL3
20  chr16   29535175       30763517  NM_001172679         ZNF764
21  chr16   29535175       30763517  NM_001193333         CORO1A
22  chr16   29535175       30763517  NM_001214906          ZNF48
26  chr16   29535175       30763517  NM_001243646         CD2BP2
27  chr16   29535175       30763517  NM_001256269          KIF22
29  chr16   29535175       30763517  NM_001256443          PRRT2
30  chr16   29535175       30763517  NM_001256829        TMEM265
31  chr16   29535175       30763517  NM_001256932      LOC730183
32  chr16   29535175       30763517  NM_001276275            MAZ
33  chr16   29535175       30763517  NM_001282062          DOC2A
36  chr16   29535175       30763517  NM_001286585          CDIPT
37  chr16   29535175       30763517  NM_001293204            MVP
38  chr16   29535175       30763517  NM_001303507          PPP4C
39  chr16   29535175       30763517  NM_001304562         INO80E
..    ...        ...            ...           ...            ...
45  chr16   29535175       30763517  NM_001324458          MYLPF
50  chr16   29535175       30763517     NM_003609         HIRIP3
51  chr16   29535175       30763517     NM_004608           TBX6
52  chr16   29535175       30763517     NM_004783          TAOK2
55  chr16   29535175       30763517     NM_006662          SRCAP
56  chr16   29535175       30763517     NM_012248         SEPHS2
58  chr16   29535175       30763517     NM_015527       TBC1D10B
61  chr16   29535175       30763517     NM_024096         DCTPP1
62  chr16   29535175       30763517     NM_024307          GDPD3
63  chr16   29535175       30763517     NM_024516          PAGR1
64  chr16   29535175       30763517     NM_024671         ZNF768
67  chr16   29535175       30763517     NM_052838          SEPT1
68  chr16   29535175       30763517     NM_138447         ZNF689
69  chr16   29535175       30763517     NM_152338           ZG16
70  chr16   29535175       30763517     NM_152458         ZNF785
72  chr16   29535175       30763517     NM_175900       C16orf54
73  chr16   29535175       30763517     NM_178863         KCTD13
74  chr16   29535175       30763517     NM_181718         ASPHD1
76  chr16   29535175       30763517     NR_002453         SMG1P5
77  chr16   29535175       30763517     NR_002454      LOC606724
78  chr16   29535175       30763517     NR_002556      LOC388242
79  chr16   29535175       30763517     NR_002966        SNORA30
80  chr16   29535175       30763517     NR_015396      CDIPT-AS1
82  chr16   29535175       30763517     NR_037608  SLX1A-SULT1A3
83  chr16   29535175       30763517     NR_039743        MIR4518
84  chr16   29535175       30763517     NR_049833      MIR3680-2
90  chr16   29535175       30763517     NR_135192   LOC101928595
92  chr16   29535175       30763517     NR_135305         SMG1P2
94  chr20   14888094       15754979  NM_001033087        MACROD2
96  chr20   14888094       15754979     NR_037841    MACROD2-AS1

[65 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143741689      144017568  NM_001123068       PPIAL4G
1    chr1  143741689      144017568  NM_001287385        FAM72C
2    chr1  143741689      144017568  NM_001345942        FAM72D
6    chr1  143741689      144017568     NR_104014     LINC01138
8   chr11    4178303        4389286  NM_001005161        OR52B4
9   chr11    4178303        4389286     NR_047550  LOC100506082
10   chr9   39061240       39190810     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48323030       48471097  NM_001004702         OR4C3
1   chr11   48323030       48471097  NM_001004725         OR4S1
2   chr11   48323030       48471097  NM_001005513        OR4C45
3   chr11   89132406       89460037  NM_001143837          NOX4
4   chr11   89132406       89460037  NM_001271942        TRIM77
9   chr11   89132406       89460037     NM_153696        FOLH1B
11  chr15   28681215       29082578  NM_001282468       GOLGA8M
12  chr15   28681215       29082578     NR_026589       WHAMMP2
13  chr15   28681215       29082578     NR_033351       GOLGA8F
14  chr15   28681215       29082578     NR_033353       GOLGA8G
15  chr15   28681215       29082578     NR_036443       HERC2P9
16  chr15   28681215       29082578     NR_036475  LOC100289656
17  chr15   28681215       29082578     NR_037599     PDCD6IPP2
18  chr15   28681215       29082578     NR_039734     MIR4509-3
19  chr17   29322587       30108855     NM_000267           NF1
20  chr17   29322587       30108855  NM_001003927         EVI2A
22  chr17   29322587       30108855  NM_001184992        RNF135
23  chr17   29322587       30108855  NM_001303542     RAB11FIP4
24  chr17   29322587       30108855     NM_002544           OMG
25  chr17   29322587       30108855     NM_006495         EVI2B
28  chr17   29322587       30108855     NR_029710       MIR193A
29  chr17   29322587       30108855     NR_029856       MIR365B
30  chr17   29322587       30108855     NR_039877       MIR4724
31  chr17   29322587       30108855     NR_039878       MIR4725
32  chr17   29322587       30108855     NR_039886       MIR4733
33  chr19   21831363       22989804  NM_001001411        ZNF676
34  chr19   21831363       22989804  NM_001080409         ZNF99
35  chr19   21831363       22989804  NM_001098626         ZNF98
36  chr19   21831363       22989804  NM_001242680        ZNF729
37  chr19   21831363       22989804  NM_001256650         ZNF43
..    ...        ...            ...           ...           ...
46  chr19   21831363       22989804     NR_033899      GOLGA2P9
47  chr19   21831363       22989804     NR_103470  LOC100996349
48  chr19   21831363       22989804     NR_110427  LOC101929124
49  chr19   21831363       22989804     NR_110663     LINC01233
50  chr19   21831363       22989804     NR_135233     LOC374890
52   chr2   97151353       97379776  NM_001115016        KANSL3
53   chr2   97151353       97379776  NM_001285485        NEURL3
54   chr2   97151353       97379776  NM_001293083        FER1L5
55   chr2   97151353       97379776  NM_001319085        ARID5A
57   chr2   97151353       97379776  NM_001322354        LMAN2L
61   chr2   97151353       97379776     NR_135564  LOC105373496
62   chr2   97376980       97621367  NM_001122646       FAM178B
64   chr2   97376980       97621367  NM_001322354        LMAN2L
65   chr2   97376980       97621367     NM_016466       ANKRD39
67   chr2   97376980       97621367     NM_017623         CNNM3
68   chr2   97376980       97621367     NM_017789        SEMA4C
69   chr2   97376980       97621367     NM_020184         CNNM4
71   chr2   97376980       97621367     NM_144994       ANKRD23
72   chr2   97376980       97621367     NR_036074       MIR3127
73   chr2   97376980       97621367     NR_110209  LOC101927053
74   chr3   17362421       17472390  NM_001134381        TBC1D5
76   chr3  172063653      172227739  NM_001135095        FNDC3B
77   chr3  172063653      172227739  NM_001190942       TNFSF10
78   chr3  172063653      172227739     NM_004122          GHSR
81   chr4   69229088       69434041     NM_001077       UGT2B17
82   chr4   69229088       69434041     NM_014058     TMPRSS11E
83   chr9   41505540       41691655  NM_001113541     SPATA31A5
84   chr9   41505540       41691655     NM_015667     SPATA31A7
85   chr9   41505540       41691655     NR_003528       ZNF658B
86   chr9   41505540       41691655     NR_026803       FAM74A1

[65 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18137846       18729001  NM_001004060         NOMO2
1   chr16   18137846       18729001  NM_001282511        NPIPA8
2   chr16   18137846       18729001     NR_003569       ABCC6P1
3   chr16   18137846       18729001     NR_036140     MIR3179-1
4   chr16   18137846       18729001     NR_036142     MIR3180-2
5   chr16   18137846       18729001     NR_036144     MIR3180-3
6   chr16   18137846       18729001     NR_037442     MIR3670-1
7   chr16   18137846       18729001     NR_103772  LOC100288162
8   chr16   18137846       18729001     NR_106971     MIR6511A4
9   chr16   18137846       18729001     NR_107060     MIR6770-2
10   chr7  110427300      110600221  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21855634       22351189  NM_001001912     OR4E2
1   chr14   21855634       22351189  NM_001005465    OR10G3
2   chr14   21855634       22351189  NM_001005466    OR10G2
3   chr14   21855634       22351189  NM_001163380     RAB2B
4   chr14   21855634       22351189  NM_001170629      CHD8
5   chr14   21855634       22351189  NM_001303523      TOX4
6   chr14   21855634       22351189  NM_001317107     OR4E1
7   chr14   21855634       22351189     NM_019852    METTL3
10  chr14   21855634       22351189     NR_002916    SNORD8
11  chr14   21855634       22351189     NR_003029    SNORD9
12  chr14   21855634       22351189     NR_111966     SALL2
14  chr16   68534064       68636254  NM_001305204     ZFP90
16  chr18   35117007       35257960     NM_020180     CELF4
17  chr18   35117007       35257960     NR_036202   MIR4318
18  chr19   23888381       24040232     NM_138286    ZNF681
19  chr19   23888381       24040232     NR_003662   RPSAP58,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   60322627       60674742  NM_001310141        MS4A18
1   chr11   60322627       60674742     NM_004778        PTGDR2
2   chr11   60322627       60674742     NM_014502        PRPF19
3   chr11   60322627       60674742     NM_024098        CCDC86
4   chr11   60322627       60674742     NM_031457         MS4A8
5   chr11   60322627       60674742     NM_152717        MS4A15
6   chr11   60322627       60674742     NM_206893        MS4A10
7   chr11   60322627       60674742     NM_207341           ZP1
8   chr11   60322627       60674742     NR_026946     LINC00301
9   chr14   21732952       21852992     NM_007192       SUPT16H
10  chr14   21732952       21852992     NM_020366       RPGRIP1
11  chr14   21732952       21852992     NM_031314        HNRNPC
12  chr15   21139516       21246056     NR_040094     LINC01193
13  chr15   21139516       21246056     NR_049895     MIR5701-2
14  chr17   64587735       64724820     NM_002737         PRKCA
15   chr2   62170369       62316244  NM_001321781        COMMD1
17   chr2   78314381       78968984     NR_110287  LOC101927948
18   chr2   78314381       78968984     NR_110288  LOC101927967
19   chr2   78314381       78968984     NR_136312  LOC105374820
20   chr6  128624003      129141265  NM_001291982         PTPRK,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   40289818       40411119  NM_001258419        LRRC4C
2   chr11   48361027       48573148  NM_001005512        OR4A47
3   chr11   48361027       48573148  NM_001005513        OR4C45
4   chr16   16291558       19713744  NM_001004060         NOMO2
5   chr16   16291558       19713744  NM_001004067         NOMO3
6   chr16   16291558       19713744     NM_001019        RPS15A
7   chr16   16291558       19713744  NM_001079528         ABCC6
8   chr16   16291558       19713744  NM_001105249          TMC5
9   chr16   16291558       19713744  NM_001160364          TMC7
11  chr16   16291558       19713744  NM_001190983          COQ7
12  chr16   16291558       19713744  NM_001199022        CCP110
13  chr16   16291558       19713744  NM_001256720       CLEC19A
15  chr16   16291558       19713744  NM_001282511        NPIPA8
18  chr16   16291558       19713744  NM_001308157         SYT17
20  chr16   16291558       19713744  NM_001313858       ARL6IP1
21  chr16   16291558       19713744  NM_001324066          GDE1
24  chr16   16291558       19713744     NM_015092          SMG1
29  chr16   16291558       19713744     NM_020314      C16orf62
30  chr16   16291558       19713744     NM_022166         XYLT1
32  chr16   16291558       19713744     NR_003569       ABCC6P1
33  chr16   16291558       19713744     NR_028028      ITPRIPL2
34  chr16   16291558       19713744     NR_036140     MIR3179-1
36  chr16   16291558       19713744     NR_036141     MIR3180-1
37  chr16   16291558       19713744     NR_036142     MIR3180-2
39  chr16   16291558       19713744     NR_036144     MIR3180-3
40  chr16   16291558       19713744     NR_036447        PKD1P1
41  chr16   16291558       19713744     NR_037442     MIR3670-1
42  chr16   16291558       19713744     NR_103772  LOC100288162
44  chr16   16291558       19713744     NR_106766     MIR6511A1
45  chr16   16291558       19713744     NR_106971     MIR6511A4
47  chr16   16291558       19713744     NR_107060     MIR6770-2
49  chr16   16291558       19713744     NR_119379  LOC102723385
51  chr16   16291558       19713744     NR_128713     MIR3670-4
52  chr16   16291558       19713744     NR_135179  LOC102723692
53  chr18   14699913       14959444  NM_001145029      ANKRD30B
54  chr18   14699913       14959444     NR_036153     MIR3156-2
55  chr18   14699913       14959444     NR_104164     LINC01443
56  chr20   14692361       14803320     NM_080676       MACROD2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   16457902       17059847  NM_001282511     NPIPA8
1  chr16   16457902       17059847     NR_106971  MIR6511A4
2   chr5  109796238      110428712  NM_001039763    TMEM232
3   chr5  109796238      110428712  NM_001303250   SLC25A46
4   chr5  109796238      110428712     NM_033035       TSLP
7   chr5  109796238      110428712     NM_139281      WDR36
8   chr5  109796238      110428712     NR_031644   MIR548F3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   97998967       98510180     NR_036189    MIR4303
1   chr12   97998967       98510180     NR_039716    MIR4495
2   chr12   97998967       98510180     NR_077240  LOC643711
4   chr14   21897205       22021928  NM_001163380      RAB2B
5   chr14   21897205       22021928  NM_001170629       CHD8
6   chr14   21897205       22021928  NM_001303523       TOX4
7   chr14   21897205       22021928     NM_019852     METTL3
10  chr14   21897205       22021928     NR_111966      SALL2
12   chr4   66724943       67379546     NR_031673   MIR1269A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245023391      245180099  NM_001143943        EFCAB2
2    chr1  245023391      245180099     NM_004501        HNRNPU
4    chr1  245023391      245180099     NR_111907  LOC101928068
5   chr14   21901650       22065100  NM_001005465        OR10G3
6   chr14   21901650       22065100  NM_001163380         RAB2B
7   chr14   21901650       22065100  NM_001303523          TOX4
8   chr14   21901650       22065100     NM_019852        METTL3
9   chr14   21901650       22065100     NM_020920          CHD8
11  chr14   21901650       22065100     NR_111966         SALL2
13  chr15   20657228       20900256  NM_001145004      GOLGA6L6
14  chr15   20657228       20900256     NR_027411      GOLGA8CP
15  chr15   20657228       20900256     NR_027992        NBEAP1
16  chr15   20657228       20900256     NR_036432       HERC2P3
17  chr20    2925159        3152380     NM_000490           AVP
18  chr20    2925159        3152380     NM_000915           OXT
19  chr20    2925159        3152380  NM_001267584         UBOX5
20  chr20    2925159        3152380  NM_001282533         LZTS3
21  chr20    2925159        3152380     NM_002836         PTPRA
22  chr20    2925159        3152380     NM_021826       FASTKD5
23  chr20    2925159        3152380     NM_030811        MRPS26
26  chr20    2925159        3152380     NM_178332         GNRH2
27  chr20    2925159        3152380     NR_038395     UBOX5-AS1
28  chr20   14829126       14966525     NM_080676       MACROD2
29  chr20   14829126       14966525     NR_037841   MACROD2-AS1
31   chr7   63835097       63990353  NM_001130022        ZNF680
33   chr7   63835097       63990353     NR_029404       YWHAEP1
34   chr9   67036321       67462201     NR_002817        AQP7P1
35   chr9   67036321       67462201     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21727035       22404776  NM_001001912         OR4E2
1   chr14   21727035       22404776  NM_001005465        OR10G3
2   chr14   21727035       22404776  NM_001005466        OR10G2
3   chr14   21727035       22404776  NM_001163380         RAB2B
4   chr14   21727035       22404776  NM_001170629          CHD8
5   chr14   21727035       22404776  NM_001303523          TOX4
6   chr14   21727035       22404776  NM_001317107         OR4E1
7   chr14   21727035       22404776     NM_007192       SUPT16H
8   chr14   21727035       22404776     NM_019852        METTL3
9   chr14   21727035       22404776     NM_020366       RPGRIP1
11  chr14   21727035       22404776     NM_031314        HNRNPC
13  chr14   21727035       22404776     NR_002916        SNORD8
14  chr14   21727035       22404776     NR_003029        SNORD9
15  chr14   21727035       22404776     NR_111966         SALL2
17  chr15   77688703       77854808  NM_001304505        HMG20A
18  chr15   77688703       77854808     NM_024776         PEAK1
19  chr15   77688703       77854808     NR_135692  LOC101929457
20   chr2   97190065       97383518  NM_001115016        KANSL3
21   chr2   97190065       97383518  NM_001293083        FER1L5
22   chr2   97190065       97383518  NM_001319085        ARID5A
24   chr2   97190065       97383518  NM_001322354        LMAN2L
27   chr2   97190065       97383518     NR_135564  LOC105373496,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr19   34642727       34763857     NM_014686     KIAA0355
1   chr19   34642727       34763857     NM_015578       LSM14A
2    chr2   25199093       25310755  NM_001319099        EFR3B
4    chr2   25199093       25310755     NR_034113  DNAJC27-AS1
5    chr4   69270046       69415518     NM_001077      UGT2B17
6    chr4   69270046       69415518     NM_014058    TMPRSS11E
7    chr7  110540015      110696024  NM_001244606       IMMP2L
9    chr8    6556808        6862924  NM_001302265       DEFA1B
10   chr8    6556808        6862924     NM_001925        DEFA4
11   chr8    6556808        6862924     NM_001926        DEFA6
12   chr8    6556808        6862924     NM_004084        DEFA1
13   chr8    6556808        6862924     NM_005218        DEFB1
14   chr8    6556808        6862924     NM_018361       AGPAT5
15   chr8    6556808        6862924     NM_207411         XKR5
16   chr8    6556808        6862924     NR_029386      DEFA10P
17   chr8    6556808        6862924     NR_036686       DEFT1P
18   chr8    6556808        6862924     NR_039803     MIR4659A
19   chr8    6556808        6862924     NR_039807     MIR4659B
20   chr8    6556808        6862924     NR_045217   GS1-24F4.2
21   chr8    6556808        6862924     NR_073407       DEFA8P
22   chr8    6556808        6862924     NR_073408       DEFA9P
23   chr8    6556808        6862924     NR_125386    MCPH1-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   87740103       87860105     NM_006769       LMO4
1    chr1   87740103       87860105     NR_038324  LINC01364
2   chr14   21757432       22094328  NM_001005465     OR10G3
3   chr14   21757432       22094328  NM_001163380      RAB2B
4   chr14   21757432       22094328  NM_001170629       CHD8
5   chr14   21757432       22094328  NM_001303523       TOX4
6   chr14   21757432       22094328     NM_007192    SUPT16H
7   chr14   21757432       22094328     NM_019852     METTL3
8   chr14   21757432       22094328     NM_020366    RPGRIP1
11  chr14   21757432       22094328     NR_002916     SNORD8
12  chr14   21757432       22094328     NR_003029     SNORD9
13  chr14   21757432       22094328     NR_111966      SALL2
15  chr15   20681971       20829225  NM_001145004   GOLGA6L6
16  chr15   20681971       20829225     NR_027411   GOLGA8CP
17  chr15   20681971       20829225     NR_036432    HERC2P3,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr5   59598701       59709557  NM_001165899     PDE4D,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21805767       21947346  NM_001163380         RAB2B
1   chr14   21805767       21947346  NM_001170629          CHD8
2   chr14   21805767       21947346  NM_001303523          TOX4
3   chr14   21805767       21947346     NM_007192       SUPT16H
4   chr14   21805767       21947346     NM_020366       RPGRIP1
7   chr14   21805767       21947346     NR_002916        SNORD8
8   chr14   21805767       21947346     NR_003029        SNORD9
9   chr14   21863701       22331839  NM_001001912         OR4E2
10  chr14   21863701       22331839  NM_001005465        OR10G3
11  chr14   21863701       22331839  NM_001005466        OR10G2
12  chr14   21863701       22331839  NM_001163380         RAB2B
13  chr14   21863701       22331839  NM_001170629          CHD8
14  chr14   21863701       22331839  NM_001303523          TOX4
15  chr14   21863701       22331839  NM_001317107         OR4E1
16  chr14   21863701       22331839     NM_019852        METTL3
19  chr14   21863701       22331839     NR_002916        SNORD8
20  chr14   21863701       22331839     NR_111966         SALL2
22  chr18   24711705       24957442  NM_001256316         CHST9
23  chr18   24711705       24957442     NR_134589  LOC105372038
24   chr2   50780773       51109316  NM_001330082         NRXN1
25   chr2   50780773       51109316     NR_130470       MIR8485
26   chr2  242466494      242669400  NM_001164356         THAP4
27   chr2  242466494      242669400  NM_001165031         DTYMK
28   chr2  242466494      242669400  NM_001330161          ING5
32   chr2  242466494      242669400     NM_032515           BOK
33   chr2  242466494      242669400     NM_178326         ATG4B
34   chr2  242466494      242669400     NR_033346       BOK-AS1
35   chr9   67181880       67283749     NR_002817        AQP7P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145351552      145498553  NM_001039888      ANKRD34A
1    chr1  145351552      145498553  NM_001277444         NBPF9
2    chr1  145351552      145498553  NM_001278267        NBPF20
3    chr1  145351552      145498553  NM_001302371        NBPF10
4    chr1  145351552      145498553  NM_001313972         TXNIP
6    chr1  145351552      145498553     NM_032305       POLR3GL
7    chr1  145351552      145498553     NM_145277          HFE2
8    chr1  145351552      145498553     NM_153713         LIX1L
9    chr1  145351552      145498553     NR_104217       NBPF25P
10   chr1  145351552      145498553     NR_125967  LOC101928979
11  chr14   21831742       22135177  NM_001001912         OR4E2
12  chr14   21831742       22135177  NM_001005465        OR10G3
13  chr14   21831742       22135177  NM_001005466        OR10G2
14  chr14   21831742       22135177  NM_001163380         RAB2B
15  chr14   21831742       22135177  NM_001170629          CHD8
16  chr14   21831742       22135177  NM_001303523          TOX4
17  chr14   21831742       22135177     NM_007192       SUPT16H
18  chr14   21831742       22135177     NM_019852        METTL3
21  chr14   21831742       22135177     NR_002916        SNORD8
22  chr14   21831742       22135177     NR_003029        SNORD9
23  chr14   21831742       22135177     NR_111966         SALL2
25   chr2  109849741      109957634  NM_001099289        SH3RF3
26   chr2  109849741      109957634     NR_036224       MIR4266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142785914      144554083  NM_001123068       PPIAL4G
1    chr1  142785914      144554083  NM_001135789       PPIAL4C
2    chr1  142785914      144554083  NM_001278267        NBPF20
3    chr1  142785914      144554083  NM_001287385        FAM72C
4    chr1  142785914      144554083  NM_001345942        FAM72D
8    chr1  142785914      144554083     NR_024511     LINC00623
10   chr1  142785914      144554083     NR_104014     LINC01138
11   chr1  142785914      144554083     NR_106967       MIR6077
12   chr1  142785914      144554083     NR_110761  LOC102723769
13   chr1  142785914      144554083     NR_111930  LOC100132057
14   chr1  142785914      144554083     NR_111953     LINC00869
16  chr15   28705493       28852008     NR_033351       GOLGA8F
17  chr15   28705493       28852008     NR_033353       GOLGA8G
18  chr15   28705493       28852008     NR_039734     MIR4509-3
19  chr16   21474729       21785250  NM_001077180        METTL9
20  chr16   21474729       21785250  NM_001161683          OTOA
22  chr16   21474729       21785250     NM_005849         IGSF6
25  chr16   21474729       21785250     NR_002594      SLC7A5P2
26  chr16   21474729       21785250     NR_027155        SMG1P3
27  chr16   21474729       21785250     NR_049833     MIR3680-2
28  chr16   21474729       21785250     NR_110930  LOC101927814
29   chr3    3988050        4588253  NM_001164675         SUMF1
30   chr3    3988050        4588253  NM_001168272         ITPR1
31   chr3    3988050        4588253  NM_001243723        SETMAR
33   chr3    3988050        4588253     NR_108075     ITPR1-AS1
34   chr7   11797215       11923180     NM_015204        THSD7A
35   chr7  118452101      119329556     NR_131960        LVCAT5
36   chr7  153817928      155069760  NM_001039350          DPP6
39   chr7  153817928      155069760     NM_007349        PAXIP1
40   chr7  153817928      155069760     NM_024012         HTR5A
42   chr7  153817928      155069760     NR_024476    PAXIP1-AS2
44   chr7  153817928      155069760     NR_028090    PAXIP1-AS1
45   chr7  153817928      155069760     NR_038945     HTR5A-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48364106       49034595  NM_001005512        OR4A47
1   chr11   48364106       49034595  NM_001005513        OR4C45
2   chr14   21667562       22203386  NM_001001912         OR4E2
3   chr14   21667562       22203386  NM_001005465        OR10G3
4   chr14   21667562       22203386  NM_001005466        OR10G2
5   chr14   21667562       22203386  NM_001163380         RAB2B
6   chr14   21667562       22203386  NM_001170629          CHD8
7   chr14   21667562       22203386  NM_001303523          TOX4
8   chr14   21667562       22203386  NM_001317107         OR4E1
9   chr14   21667562       22203386     NM_007192       SUPT16H
10  chr14   21667562       22203386     NM_019852        METTL3
11  chr14   21667562       22203386     NM_020366       RPGRIP1
13  chr14   21667562       22203386     NM_031314        HNRNPC
15  chr14   21667562       22203386     NR_002916        SNORD8
16  chr14   21667562       22203386     NR_003029        SNORD9
17  chr14   21667562       22203386     NR_038970     LINC00641
19  chr14   21667562       22203386     NR_111966         SALL2
21  chr14   42186339       42308019  NM_001346175         LRFN5
22   chr2  107663101      107820372     NR_049853      MIR548AU
23   chr2  186287622      186670647     NM_173651         FSIP2
24   chr2  186287622      186670647     NR_110214  LOC101927196
27   chr2  186287622      186670647     NR_144453     FSIP2-AS1
29   chr4   69242951       69913440     NM_001075       UGT2B10
31   chr4   69242951       69913440     NM_001076       UGT2B15
32   chr4   69242951       69913440     NM_001077       UGT2B17
33   chr4   69242951       69913440     NM_014058     TMPRSS11E
34   chr4   69242951       69913440     NM_024743        UGT2A3
35   chr9   30231918       30493516     NR_046204     LINC01242
36   chr9   80115195       80454852     NM_002072          GNAQ
37   chr9   80115195       80454852     NM_004297         GNA14
38   chr9   80115195       80454852     NR_121184     GNA14-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21901804       22057060  NM_001005465        OR10G3
1   chr14   21901804       22057060  NM_001163380         RAB2B
2   chr14   21901804       22057060  NM_001303523          TOX4
3   chr14   21901804       22057060     NM_019852        METTL3
4   chr14   21901804       22057060     NM_020920          CHD8
6   chr14   21901804       22057060     NR_111966         SALL2
8    chr2  153038524      153704724     NM_017892       PRPF40A
9    chr2  153038524      153704724     NM_052905         FMNL2
10   chr2  153038524      153704724     NM_152522       ARL6IP6
11   chr4   93277564       93392518     NM_001510         GRID2
12   chr7   57277173       57649647  NM_001159279        ZNF716
13   chr7   57277173       57649647     NR_036102       MIR3147
14   chr7   57277173       57649647     NR_136269  LOC105375297,     chrom  cnv_start  cnv_terminate       tx_name        gene_name
0   chr10  100615939      100756324  NM_001166244            HPSE2
1   chr10  100615939      100756324     NR_106762          MIR6507
2   chr11   37944612       38089536     NR_135110     LOC105376633
3   chr14   21641193       22936471  NM_001001912            OR4E2
4   chr14   21641193       22936471  NM_001005465           OR10G3
5   chr14   21641193       22936471  NM_001005466           OR10G2
6   chr14   21641193       22936471  NM_001163380            RAB2B
7   chr14   21641193       22936471  NM_001170629             CHD8
8   chr14   21641193       22936471  NM_001303523             TOX4
9   chr14   21641193       22936471  NM_001317107            OR4E1
10  chr14   21641193       22936471     NM_007192          SUPT16H
11  chr14   21641193       22936471     NM_019852           METTL3
12  chr14   21641193       22936471     NM_020366          RPGRIP1
14  chr14   21641193       22936471     NM_031314           HNRNPC
16  chr14   21641193       22936471     NR_002916           SNORD8
17  chr14   21641193       22936471     NR_003029           SNORD9
18  chr14   21641193       22936471     NR_038970        LINC00641
20  chr14   21641193       22936471     NR_111966            SALL2
22   chr2  110153925      110666146  NM_001037866            RGPD6
23   chr2  110153925      110666146  NM_001099289           SH3RF3
25   chr2  110153925      110666146  NM_001205288            LIMS4
26   chr2  110153925      110666146  NM_001321504           SEPT10
28   chr2  110153925      110666146     NM_005054            RGPD5
29   chr2  110153925      110666146     NM_023016           SOWAHC
30   chr2  110153925      110666146     NR_027145  LIMS3-LOC440895
31   chr2  110153925      110666146     NR_027467            LIMS3
32  chr20   14435482       14555876     NM_080676          MACROD2
33  chr20   14435482       14555876     NR_104193      MACROD2-IT1
34   chr4   69320417       69420690     NM_001077          UGT2B17
35   chr4   69320417       69420690     NM_014058        TMPRSS11E
36   chr5      73551         377236  NM_001080478          LRRC14B
37   chr5      73551         377236  NM_001242412             AHRR
38   chr5      73551         377236     NM_004168             SDHA
39   chr5      73551         377236     NM_013232            PDCD6
40   chr5      73551         377236     NM_052909         PLEKHG4B
41   chr5      73551         377236     NM_145265          CCDC127
43   chr5      73551         377236     NR_104613            HRAT5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21829539       22128659  NM_001005465        OR10G3
1   chr14   21829539       22128659  NM_001005466        OR10G2
2   chr14   21829539       22128659  NM_001163380         RAB2B
3   chr14   21829539       22128659  NM_001170629          CHD8
4   chr14   21829539       22128659  NM_001303523          TOX4
5   chr14   21829539       22128659     NM_007192       SUPT16H
6   chr14   21829539       22128659     NM_019852        METTL3
9   chr14   21829539       22128659     NR_002916        SNORD8
10  chr14   21829539       22128659     NR_003029        SNORD9
11  chr14   21829539       22128659     NR_111966         SALL2
13  chr21   13512910       15183556     NM_174981         POTED
14  chr21   13512910       15183556     NR_026916    ANKRD30BP2
15  chr21   13512910       15183556     NR_036061     MIR3118-1
16  chr21   13512910       15183556     NR_036164     MIR3156-3
17  chr21   13512910       15183556     NR_110544  LOC102724188
18  chr21   13512910       15183556     NR_128718     MIR8069-2
19   chr7  110586168      110736511  NM_001099658         LRRN3
20   chr7  110586168      110736511  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    6716377        6845096  NM_001004489        OR2AG1
1   chr11    6716377        6845096  NM_001004490        OR2AG2
2   chr11    6716377        6845096     NM_003696         OR6A2
3   chr11    6716377        6845096     NR_003945        GVINP1
4   chr11   67296978       67411788     NM_000852         GSTP1
5   chr11   67296978       67411788  NM_001166102        NDUFV1
6   chr11   67296978       67411788  NM_001243750         NUDT8
7   chr11   67296978       67411788     NM_005995         TBX10
8   chr11   67296978       67411788     NM_080658          ACY3
10  chr11   67296978       67411788     NR_033791        DOC2GP
11  chr11   67296978       67411788     NR_130935      C11orf72
12  chr11  134258767      134516915     NM_054025        B3GAT1
13  chr11  134258767      134516915     NR_033852     LOC283177
14  chr14   21774014       21890381  NM_001170629          CHD8
15  chr14   21774014       21890381     NM_007192       SUPT16H
16  chr14   21774014       21890381     NM_020366       RPGRIP1
18  chr14   21774014       21890381     NR_002916        SNORD8
19  chr14   21774014       21890381     NR_003029        SNORD9
20  chr16   29530279       29640365     NR_049833     MIR3680-2
21  chr16   29530279       29640365     NR_135305        SMG1P2
23  chr16   71127376       71644638     NM_000353           TAT
24  chr16   71127376       71644638  NM_001099642         CMTR2
25  chr16   71127376       71644638  NM_001166395         CHST4
26  chr16   71127376       71644638  NM_001198542         HYDIN
28  chr16   71127376       71644638  NM_001304492         ZNF23
33  chr16   71127376       71644638     NM_001740         CALB2
35  chr16   71127376       71644638     NM_006961         ZNF19
39  chr16   71127376       71644638     NR_103851       TAT-AS1
41  chr16   71127376       71644638     NR_135172  LOC105371335,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   82386729       82952602  NM_001297704    ADGRL2
2    chr1  244320307      244725099  NM_001012970  C1orf100
3    chr1  244320307      244725099     NM_001126      ADSS
4    chr1  244320307      244725099  NM_001242340  C1orf101
5   chr14   21871437       22026481  NM_001163380     RAB2B
6   chr14   21871437       22026481  NM_001170629      CHD8
7   chr14   21871437       22026481  NM_001303523      TOX4
8   chr14   21871437       22026481     NM_019852    METTL3
11  chr14   21871437       22026481     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21912868       22033354  NM_001163380     RAB2B
1   chr14   21912868       22033354  NM_001303523      TOX4
2   chr14   21912868       22033354     NM_019852    METTL3
4   chr14   21912868       22033354     NR_111966     SALL2
6   chr16   76292820       76423790  NM_001322181   CNTNAP4
8    chr2  193449107      194842416     NR_002769    PCGEM1
9    chr3  131318197      131563093  NM_001289112     CPNE4
12   chr3  163677735      163910153     NR_031665   MIR1263
13   chr7    8693241        9002982     NM_152745     NXPH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16342034       16544940  NM_001004067         NOMO3
1   chr16   16342034       16544940  NM_001282511        NPIPA8
2   chr16   16342034       16544940     NR_036140     MIR3179-1
3   chr16   16342034       16544940     NR_036141     MIR3180-1
4   chr16   16342034       16544940     NR_036142     MIR3180-2
5   chr16   16342034       16544940     NR_036447        PKD1P1
6   chr16   16342034       16544940     NR_103772  LOC100288162
7   chr16   16342034       16544940     NR_106766     MIR6511A1
8   chr16   16342034       16544940     NR_106971     MIR6511A4
9   chr16   16342034       16544940     NR_107060     MIR6770-2
10  chr16   16342034       16544940     NR_128713     MIR3670-4
11   chr3  156098874      157388537  NM_001004316         LEKR1
12   chr3  156098874      157388537  NM_001099777        PQLC2L
14   chr3  156098874      157388537  NM_001167911         VEPH1
17   chr3  156098874      157388537  NM_001184717        TIPARP
20   chr3  156098874      157388537  NM_001308185         CCNL1
21   chr3  156098874      157388537  NM_001308197          SSR3
24   chr3  156098874      157388537  NM_001308217        KCNAB1
26   chr3  156098874      157388537     NM_002852          PTX3
33   chr3  156098874      157388537     NR_003284       PA2G4P4
35   chr3  156098874      157388537     NR_027954    TIPARP-AS1
36   chr3  156098874      157388537     NR_034007     LINC00880
37   chr3  156098874      157388537     NR_034008     LINC00881
38   chr3  156098874      157388537     NR_038387     LINC00886
39   chr3  156098874      157388537     NR_046618    KCNAB1-AS1
40   chr3  156098874      157388537     NR_135546  LOC105374177
41   chr6  162549207      162715312     NM_013988         PARK2
42   chr9   41909045       42700687  NM_001012419     ANKRD20A3
43   chr9   41909045       42700687  NM_001012421     ANKRD20A2
44   chr9   41909045       42700687     NR_003670        FGF7P3
45   chr9   41909045       42700687     NR_015363         GLIDR
46   chr9   41909045       42700687     NR_121572      GXYLT1P3
49   chr9   41909045       42700687     NR_126048  LOC102724238
50   chr9   41909045       42700687     NR_126049     LOC554249
51   chr9   41909045       42700687     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144741600      145086054  NM_001002810       PDE4DIP
7    chr1  144741600      145086054  NM_001277444         NBPF9
8    chr1  144741600      145086054  NM_001278267        NBPF20
10   chr1  144741600      145086054     NR_102405         NBPF8
11   chr2  186607229      186858782     NM_173651         FSIP2
12   chr2  186607229      186858782     NR_144453     FSIP2-AS1
14  chr20   14710513       15016268     NM_080676       MACROD2
15  chr20   14710513       15016268     NR_037841   MACROD2-AS1
17   chr7   29452300       30158014  NM_001080529         WIPF3
18   chr7   29452300       30158014  NM_001145513         SCRN1
20   chr7   29452300       30158014  NM_001197026       PLEKHA8
22   chr7   29452300       30158014  NM_001293069          CHN2
26   chr7   29452300       30158014  NM_001329997         PRR15
29   chr7   29452300       30158014     NM_017946        FKBP14
32   chr7   29452300       30158014     NR_024278     LOC646762
33   chr7   29452300       30158014     NR_027347       ZNRF2P2
34   chr7   29452300       30158014     NR_036482     DPY19L2P3
35   chr7   29452300       30158014     NR_039600      MIR550A3
36   chr7   64065638       64362143  NM_001160183        ZNF138
37   chr7   64065638       64362143  NM_001282360        ZNF107
39   chr7   64065638       64362143     NR_077227  LOC100128885
41   chr7   64065638       64362143     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12786764       12944959  NM_001009611    PRAMEF4
1    chr1   12786764       12944959  NM_001013631   HNRNPCL1
2    chr1   12786764       12944959  NM_001080830   PRAMEF12
3    chr1   12786764       12944959  NM_001103170    AADACL3
4    chr1   12786764       12944959  NM_001146181   HNRNPCL3
5    chr1   12786764       12944959  NM_001146344   PRAMEF11
6    chr1   12786764       12944959  NM_001294139    PRAMEF1
7    chr1   12786764       12944959  NM_001302551   HNRNPCL4
9    chr1   12786764       12944959     NM_023014    PRAMEF2
10   chr1   12786764       12944959     NM_152290   C1orf158
11  chr14   21792275       21910901  NM_001170629       CHD8
12  chr14   21792275       21910901     NM_007192    SUPT16H
13  chr14   21792275       21910901     NM_020366    RPGRIP1
15  chr14   21792275       21910901     NR_002916     SNORD8
16  chr14   21792275       21910901     NR_003029     SNORD9
17   chr3   37852121       37976227     NM_002207      ITGA9
18   chr3   37852121       37976227     NM_005808     CTDSPL
19   chr3   37852121       37976227     NR_110531  ITGA9-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21871734       22028262  NM_001163380         RAB2B
1   chr14   21871734       22028262  NM_001170629          CHD8
2   chr14   21871734       22028262  NM_001303523          TOX4
3   chr14   21871734       22028262     NM_019852        METTL3
6   chr14   21871734       22028262     NR_111966         SALL2
8   chr22   20059358       21730004     NM_000185      SERPIND1
9   chr22   20059358       21730004  NM_001018060         AIFM3
11  chr22   20059358       21730004  NM_001159554         P2RX6
12  chr22   20059358       21730004  NM_001190326         DGCR8
13  chr22   20059358       21730004  NM_001242313      TMEM191B
14  chr22   20059358       21730004  NM_001243537       CCDC188
15  chr22   20059358       21730004  NM_001256523         ZNF74
16  chr22   20059358       21730004  NM_001278639        RANBP1
19  chr22   20059358       21730004  NM_001291006       LRRC74B
20  chr22   20059358       21730004  NM_001293236         MED15
22  chr22   20059358       21730004     NM_004173        SLC7A4
23  chr22   20059358       21730004     NM_004782        SNAP29
24  chr22   20059358       21730004     NM_005207          CRKL
26  chr22   20059358       21730004     NM_006767         LZTR1
27  chr22   20059358       21730004     NM_013373        ZDHHC8
28  chr22   20059358       21730004     NM_015672        RIMBP3
29  chr22   20059358       21730004     NM_022727        TRMT2A
30  chr22   20059358       21730004     NM_023004         RTN4R
31  chr22   20059358       21730004     NM_030573         THAP7
32  chr22   20059358       21730004     NM_033257        DGCR6L
33  chr22   20059358       21730004     NM_058004         PI4KA
34  chr22   20059358       21730004     NM_153334        SCARF2
35  chr22   20059358       21730004     NR_002829        P2RX6P
36  chr22   20059358       21730004     NR_003563       PI4KAP1
37  chr22   20059358       21730004     NR_003608       TUBA3FP
38  chr22   20059358       21730004     NR_024583     POM121L8P
39  chr22   20059358       21730004     NR_024592     POM121L4P
40  chr22   20059358       21730004     NR_026815      TMEM191A
41  chr22   20059358       21730004     NR_026919     LINC00896
42  chr22   20059358       21730004     NR_027051     THAP7-AS1
44  chr22   20059358       21730004     NR_030379        MIR649
45  chr22   20059358       21730004     NR_031618       MIR1286
46  chr22   20059358       21730004     NR_031706       MIR1306
47  chr22   20059358       21730004     NR_033825        KLHL22
48  chr22   20059358       21730004     NR_037412       MIR3618
49  chr22   20059358       21730004     NR_037566         BCRP2
50  chr22   20059358       21730004     NR_038460     LOC284865
51  chr22   20059358       21730004     NR_106874       MIR6816
52  chr22   20059358       21730004     NR_108107       FAM230B
53  chr22   20059358       21730004     NR_110537  LOC101928891
54  chr22   20059358       21730004     NR_136559  LOC100996335
55  chr22   20059358       21730004     NR_136560       FAM230A
56  chr22   20059358       21730004     NR_136569     LOC729461
57  chr22   20059358       21730004     NR_136572  LOC101927859
58  chr22   20059358       21730004     NR_136575  LOC102724728
60   chr5  167276581      167379506  NM_001080428         TENM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108395352      108536654     NM_006113          VAV3
1    chr1  108395352      108536654     NR_046653      VAV3-AS1
2    chr1  108395352      108536654     NR_107006       MIR7852
3   chr12   27083410       27212979  NM_001171887      FGFR1OP2
5   chr12   27083410       27212979  NM_001271811         MED21
6   chr12   27083410       27212979     NM_016551        TM7SF3
7   chr12   27083410       27212979     NM_018164          ASUN
8   chr15   28632304       30036076  NM_001130414         APBA2
9   chr15   28632304       30036076  NM_001282468       GOLGA8M
10  chr15   28632304       30036076  NM_001301025          TJP1
13  chr15   28632304       30036076     NM_015307      FAM189A1
14  chr15   28632304       30036076     NM_138704        NSMCE3
15  chr15   28632304       30036076     NR_026589       WHAMMP2
16  chr15   28632304       30036076     NR_033351       GOLGA8F
18  chr15   28632304       30036076     NR_033353       GOLGA8G
20  chr15   28632304       30036076     NR_036443       HERC2P9
21  chr15   28632304       30036076     NR_036475  LOC100289656
22  chr15   28632304       30036076     NR_037599     PDCD6IPP2
23  chr15   28632304       30036076     NR_039734     MIR4509-3
25  chr15   28632304       30036076     NR_047567     GOLGA6L7P
26  chr15   28632304       30036076     NR_135221  LOC100130111
27  chr17   29348754       29759179     NM_000267           NF1
28  chr17   29348754       29759179  NM_001003927         EVI2A
30  chr17   29348754       29759179     NM_002544           OMG
31  chr17   29348754       29759179     NM_006495         EVI2B
32  chr17   29348754       29759179     NM_032932     RAB11FIP4
33  chr17   29348754       29759179     NR_039886       MIR4733
34  chr19   24221796       24479944  NM_001278661        ZNF254
37  chr19   24221796       24479944     NR_003603      HAVCR1P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81452493       81590257  NM_001278495        NUTM2B
1   chr10   81452493       81590257     NR_029407     LOC642361
2   chr10   81452493       81590257     NR_120611    NUTM2B-AS1
5   chr14   42083919       42613383  NM_001346175         LRFN5
6   chr15   28712596       29323707  NM_001130414         APBA2
7   chr15   28712596       29323707  NM_001282468       GOLGA8M
8   chr15   28712596       29323707     NR_026589       WHAMMP2
9   chr15   28712596       29323707     NR_033351       GOLGA8F
10  chr15   28712596       29323707     NR_033353       GOLGA8G
11  chr15   28712596       29323707     NR_036443       HERC2P9
12  chr15   28712596       29323707     NR_036475  LOC100289656
13  chr15   28712596       29323707     NR_037599     PDCD6IPP2
14  chr15   28712596       29323707     NR_039734     MIR4509-3
15  chr15   28712596       29323707     NR_047567     GOLGA6L7P
16   chr4  121601656      121740521     NM_018699         PRDM5
17   chr5   31195329       31407974     NM_004932          CDH6
18   chr5   31195329       31407974     NM_013235        DROSHA
19   chr5  106146168      106250240     NR_104671  LOC102467213
20   chr9   41883740       42094153     NR_003670        FGF7P3
21   chr9   41883740       42094153     NR_015363         GLIDR
24   chr9   41883740       42094153     NR_126048  LOC102724238
25   chr9   41883740       42094153     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12779001       12927248  NM_001013631      HNRNPCL1
1    chr1   12779001       12927248  NM_001080830      PRAMEF12
2    chr1   12779001       12927248  NM_001103170       AADACL3
3    chr1   12779001       12927248  NM_001146181      HNRNPCL3
4    chr1   12779001       12927248  NM_001146344      PRAMEF11
5    chr1   12779001       12927248  NM_001294139       PRAMEF1
6    chr1   12779001       12927248  NM_001302551      HNRNPCL4
8    chr1   12779001       12927248     NM_023014       PRAMEF2
9    chr1   12779001       12927248     NM_152290      C1orf158
10  chr15   28636102       28932424     NR_033351       GOLGA8F
12  chr15   28636102       28932424     NR_033353       GOLGA8G
14  chr15   28636102       28932424     NR_036443       HERC2P9
15  chr15   28636102       28932424     NR_039734     MIR4509-3
17  chr16   15395895       15717786  NM_001128423        MPV17L
18  chr16   15395895       15717786  NM_001142469      C16orf45
19  chr16   15395895       15717786  NM_001184998      KIAA0430
20  chr16   15395895       15717786  NM_001277325        NPIPA5
22  chr16   15395895       15717786     NR_106761       MIR6506
23  chr16   18313872       18487485  NM_001282511        NPIPA8
24  chr16   18313872       18487485     NR_103772  LOC100288162
25  chr16   18313872       18487485     NR_106971     MIR6511A4
26  chr16   18313872       18487485     NR_107060     MIR6770-2
27   chr2   97183845       97345623  NM_001115016        KANSL3
28   chr2   97183845       97345623  NM_001293083        FER1L5
29   chr2   97183845       97345623  NM_001319085        ARID5A
32   chr2   97183845       97345623     NR_135564  LOC105373496
33   chr2  186226649      186723340     NM_173651         FSIP2
34   chr2  186226649      186723340     NR_110214  LOC101927196
37   chr2  186226649      186723340     NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4285987        4658461  NM_001004137        OR52M1
1   chr11    4285987        4658461  NM_001005161        OR52B4
2   chr11    4285987        4658461  NM_001005169        OR52I1
3   chr11    4285987        4658461  NM_001005170        OR52I2
4   chr11    4285987        4658461  NM_001005171        OR52K1
5   chr11    4285987        4658461  NM_001005172        OR52K2
6   chr11    4285987        4658461     NM_003141        TRIM21
7   chr11    4285987        4658461     NM_018073        TRIM68
8   chr11    4285987        4658461     NM_144663      C11orf40
9   chr14   21803692       21939079  NM_001163380         RAB2B
10  chr14   21803692       21939079  NM_001170629          CHD8
11  chr14   21803692       21939079     NM_007192       SUPT16H
12  chr14   21803692       21939079     NM_020366       RPGRIP1
15  chr14   21803692       21939079     NR_002916        SNORD8
16  chr14   21803692       21939079     NR_003029        SNORD9
17  chr22   20580059       20734069     NR_136569     LOC729461
18  chr22   20580059       20734069     NR_136572  LOC101927859
19   chr3     596399         696597     NR_110118     LINC01266
20   chr3     825625        1071511     NR_110118     LINC01266
21   chr5   17719282       17863856     NR_134286     LOC646241
23   chr6  162755511      163009751     NM_013988         PARK2
24   chr7   21435104       21580625  NM_001326542           SP4
25   chr7   21435104       21580625     NR_031594       MIR1183,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10    1998760        2100805     NR_040253  LINC00700
1   chr14   21843130       22002472  NM_001163380      RAB2B
2   chr14   21843130       22002472  NM_001170629       CHD8
3   chr14   21843130       22002472  NM_001303523       TOX4
4   chr14   21843130       22002472     NM_007192    SUPT16H
5   chr14   21843130       22002472     NM_019852     METTL3
8   chr14   21843130       22002472     NR_002916     SNORD8
9   chr14   21843130       22002472     NR_003029     SNORD9
10  chr14   21843130       22002472     NR_111966      SALL2
12  chr21   22386506       22517697     NM_004540      NCAM2
13   chr9   39110250       39253435     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  100644012      100950128  NM_001166244         HPSE2
1   chr10  100644012      100950128     NR_106762       MIR6507
2   chr14   21795319       21943380  NM_001163380         RAB2B
3   chr14   21795319       21943380  NM_001170629          CHD8
4   chr14   21795319       21943380     NM_007192       SUPT16H
5   chr14   21795319       21943380     NM_020366       RPGRIP1
8   chr14   21795319       21943380     NR_002916        SNORD8
9   chr14   21795319       21943380     NR_003029        SNORD9
10   chr2   36252835       36588377     NM_016441         CRIM1
11   chr2   36252835       36588377     NR_037631  LOC100288911
12   chr4    3956718        4101733     NR_130741       FAM86EP
13   chr5   17740164       17861410     NR_134286     LOC646241,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21943349       22165130  NM_001001912     OR4E2
1  chr14   21943349       22165130  NM_001005465    OR10G3
2  chr14   21943349       22165130  NM_001005466    OR10G2
3  chr14   21943349       22165130  NM_001163380     RAB2B
4  chr14   21943349       22165130  NM_001303523      TOX4
5  chr14   21943349       22165130  NM_001317107     OR4E1
6  chr14   21943349       22165130     NM_019852    METTL3
8  chr14   21943349       22165130     NR_111966     SALL2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   28706922       29091911  NM_001282468       GOLGA8M
1  chr15   28706922       29091911     NR_026589       WHAMMP2
2  chr15   28706922       29091911     NR_033351       GOLGA8F
3  chr15   28706922       29091911     NR_033353       GOLGA8G
4  chr15   28706922       29091911     NR_036443       HERC2P9
5  chr15   28706922       29091911     NR_036475  LOC100289656
6  chr15   28706922       29091911     NR_037599     PDCD6IPP2
7  chr15   28706922       29091911     NR_039734     MIR4509-3
8  chr15   28706922       29091911     NR_047567     GOLGA6L7P
9   chr3   60383319       60574934  NM_001320899          FHIT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21848564       21949345  NM_001163380         RAB2B
1   chr14   21848564       21949345  NM_001170629          CHD8
2   chr14   21848564       21949345  NM_001303523          TOX4
3   chr14   21848564       21949345     NM_007192       SUPT16H
6   chr14   21848564       21949345     NR_002916        SNORD8
7   chr14   21848564       21949345     NR_003029        SNORD9
8   chr15   30299727       30510374  NM_001282472       GOLGA8J
9   chr15   30299727       30510374     NR_026771  DKFZP434L187
10  chr15   30299727       30510374     NR_026859        ULK4P3
11  chr15   30299727       30510374     NR_033933       GOLGA8T,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143458606      144080125  NM_001123068       PPIAL4G
1    chr1  143458606      144080125  NM_001287385        FAM72C
2    chr1  143458606      144080125  NM_001345942        FAM72D
6    chr1  143458606      144080125     NR_104014     LINC01138
7    chr1  143458606      144080125     NR_106967       MIR6077
8    chr1  143458606      144080125     NR_111930  LOC100132057
10  chr13   80881857       81136097  NM_001318536         SPRY2
13  chr14   21761234       21886573  NM_001170629          CHD8
14  chr14   21761234       21886573     NM_007192       SUPT16H
15  chr14   21761234       21886573     NM_020366       RPGRIP1
17  chr14   21761234       21886573     NR_002916        SNORD8
18  chr14   21761234       21886573     NR_003029        SNORD9
19  chr18   35106347       35225157     NM_020180         CELF4
20   chr2   75838333       76101193  NM_001201334         GCFC2
23   chr2   75838333       76101193     NM_014763        MRPL19,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21721168       22076145  NM_001005465    OR10G3
1   chr14   21721168       22076145  NM_001163380     RAB2B
2   chr14   21721168       22076145  NM_001170629      CHD8
3   chr14   21721168       22076145  NM_001303523      TOX4
4   chr14   21721168       22076145     NM_007192   SUPT16H
5   chr14   21721168       22076145     NM_019852    METTL3
6   chr14   21721168       22076145     NM_020366   RPGRIP1
8   chr14   21721168       22076145     NM_031314    HNRNPC
10  chr14   21721168       22076145     NR_002916    SNORD8
11  chr14   21721168       22076145     NR_003029    SNORD9
12  chr14   21721168       22076145     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21936152       22049035  NM_001005465        OR10G3
1   chr14   21936152       22049035  NM_001163380         RAB2B
2   chr14   21936152       22049035  NM_001303523          TOX4
3   chr14   21936152       22049035     NM_019852        METTL3
5   chr14   21936152       22049035     NR_111966         SALL2
7    chr2   81631853       81734043     NR_110161  LOC100507201
8    chr7      61713         168470     NR_108065  LOC100507642
9    chr7      61713         168470     NR_134325  LOC102723672
10   chr7    3351318        3734714     NM_152744          SDK1
11   chr7  111211297      111377028     NM_014705         DOCK4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr19    1762145        1969300  NM_001080488       ONECUT3
1   chr19    1762145        1969300  NM_001130111       ABHD17A
2   chr19    1762145        1969300  NM_001178002        ATP8B3
3   chr19    1762145        1969300     NM_001319       CSNK1G2
4   chr19    1762145        1969300  NM_001329539        SCAMP4
5   chr19    1762145        1969300     NM_020695         REXO1
6   chr19    1762145        1969300     NM_031918         KLF16
7   chr19    1762145        1969300     NM_138422         ADAT3
9   chr19    1762145        1969300     NR_031730       MIR1909
10  chr19    1762145        1969300     NR_033400   CSNK1G2-AS1
11  chr19    1762145        1969300     NR_034114  LOC100288123
12   chr2  186540823      186690639     NM_173651         FSIP2
13   chr2  186540823      186690639     NR_110214  LOC101927196
16   chr2  186540823      186690639     NR_144453     FSIP2-AS1
18  chr20   14678479       15862294  NM_001033087       MACROD2
20  chr20   14678479       15862294     NR_037841   MACROD2-AS1
22   chr4   94146946       94505209     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   16345135       16543385  NM_001170798       SLC15A5
1   chr12   16345135       16543385  NM_001267598         MGST1
6   chr15   28811842       30037957  NM_001130414         APBA2
7   chr15   28811842       30037957  NM_001282468       GOLGA8M
8   chr15   28811842       30037957  NM_001301025          TJP1
11  chr15   28811842       30037957     NM_015307      FAM189A1
12  chr15   28811842       30037957     NM_138704        NSMCE3
13  chr15   28811842       30037957     NR_026589       WHAMMP2
14  chr15   28811842       30037957     NR_036443       HERC2P9
15  chr15   28811842       30037957     NR_036475  LOC100289656
16  chr15   28811842       30037957     NR_037599     PDCD6IPP2
17  chr15   28811842       30037957     NR_047567     GOLGA6L7P
18  chr15   28811842       30037957     NR_135221  LOC100130111
19   chr7   83082411       83344164  NM_001178129        SEMA3E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12745835       13116059  NM_001009611       PRAMEF4
1    chr1   12745835       13116059  NM_001010889       PRAMEF6
2    chr1   12745835       13116059  NM_001010890       PRAMEF9
3    chr1   12745835       13116059  NM_001012276       PRAMEF8
4    chr1   12745835       13116059  NM_001013407       PRAMEF5
5    chr1   12745835       13116059  NM_001013631      HNRNPCL1
6    chr1   12745835       13116059  NM_001080830      PRAMEF12
7    chr1   12745835       13116059  NM_001099850      PRAMEF18
8    chr1   12745835       13116059  NM_001100631      PRAMEF22
9    chr1   12745835       13116059  NM_001103170       AADACL3
10   chr1   12745835       13116059  NM_001146181      HNRNPCL3
11   chr1   12745835       13116059  NM_001146344      PRAMEF11
12   chr1   12745835       13116059  NM_001294139       PRAMEF1
13   chr1   12745835       13116059  NM_001302551      HNRNPCL4
14   chr1   12745835       13116059  NM_001306072      PRAMEF26
15   chr1   12745835       13116059  NM_001310134      PRAMEF25
17   chr1   12745835       13116059     NM_023014       PRAMEF2
18   chr1   12745835       13116059     NM_152290      C1orf158
19  chr11    6662455        6791244  NM_001004490        OR2AG2
20  chr11    6662455        6791244     NM_003737         DCHS1
21  chr11    6662455        6791244     NM_022061        MRPL17
22  chr11    6662455        6791244     NR_003945        GVINP1
23  chr14   42228372       42330475  NM_001346175         LRFN5
24  chr16   18249371       18566038  NM_001004060         NOMO2
25  chr16   18249371       18566038  NM_001282511        NPIPA8
26  chr16   18249371       18566038     NR_036140     MIR3179-1
27  chr16   18249371       18566038     NR_036142     MIR3180-2
28  chr16   18249371       18566038     NR_036144     MIR3180-3
29  chr16   18249371       18566038     NR_037442     MIR3670-1
30  chr16   18249371       18566038     NR_103772  LOC100288162
31  chr16   18249371       18566038     NR_106971     MIR6511A4
32  chr16   18249371       18566038     NR_107060     MIR6770-2
33  chr16   21470320       21609992  NM_001288659        METTL9
34  chr16   21470320       21609992     NR_002594      SLC7A5P2
35  chr16   21470320       21609992     NR_027155        SMG1P3
36  chr16   21470320       21609992     NR_049833     MIR3680-2
37  chr16   21470320       21609992     NR_110930  LOC101927814
38   chr2   97476907       97676357  NM_001122646       FAM178B
40   chr2   97476907       97676357     NM_016466       ANKRD39
42   chr2   97476907       97676357     NM_017623         CNNM3
43   chr2   97476907       97676357     NM_017789        SEMA4C
44   chr2   97476907       97676357     NM_020184         CNNM4
45   chr2   97476907       97676357     NM_144994       ANKRD23
46   chr2   97476907       97676357     NR_110209  LOC101927053
47   chr5  109612323      110148147  NM_001039763       TMEM232
48   chr5  109612323      110148147  NM_001303250      SLC25A46
50   chr5  109612323      110148147     NR_031644      MIR548F3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108448328      108551488     NM_006113          VAV3
1    chr1  108448328      108551488     NR_046653      VAV3-AS1
2    chr1  143587141      143907994  NM_001123068       PPIAL4G
3    chr1  143587141      143907994  NM_001287385        FAM72C
4    chr1  143587141      143907994  NM_001345942        FAM72D
8    chr1  143587141      143907994     NR_104014     LINC01138
9    chr1  143587141      143907994     NR_106967       MIR6077
10   chr1  143587141      143907994     NR_111930  LOC100132057
12  chr18   63204672       64546452  NM_001317214          CDH7
14  chr18   63204672       64546452     NM_021153         CDH19
16   chr2   35377451       36763913     NM_016441         CRIM1
17   chr2   35377451       36763913     NR_037631  LOC100288911
18   chr2   35377451       36763913     NR_039629      MIR548AD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   10625357       10969408  NM_001300739        MAGOHB
1   chr12   10625357       10969408     NM_003651          YBX3
3   chr12   10625357       10969408     NM_018423         STYK1
4   chr12   10625357       10969408     NM_023917        TAS2R9
5   chr12   10625357       10969408     NM_023918        TAS2R8
6   chr12   10625357       10969408     NM_023919        TAS2R7
7   chr12   10625357       10969408     NR_028045        KLRA1P
8   chr12   10625357       10969408     NR_120463  LOC101928162
9   chr14   21805945       22115793  NM_001005465        OR10G3
10  chr14   21805945       22115793  NM_001005466        OR10G2
11  chr14   21805945       22115793  NM_001163380         RAB2B
12  chr14   21805945       22115793  NM_001170629          CHD8
13  chr14   21805945       22115793  NM_001303523          TOX4
14  chr14   21805945       22115793     NM_007192       SUPT16H
15  chr14   21805945       22115793     NM_019852        METTL3
16  chr14   21805945       22115793     NM_020366       RPGRIP1
19  chr14   21805945       22115793     NR_002916        SNORD8
20  chr14   21805945       22115793     NR_003029        SNORD9
21  chr14   21805945       22115793     NR_111966         SALL2
23   chr3     318377         639391  NM_001253387          CHL1
25   chr3     318377         639391     NR_110118     LINC01266
26   chr3     318377         639391     NR_110739      CHL1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13  113496097      113623015     NM_015205        ATP11A
1   chr13  113496097      113623015     NR_034002     MCF2L-AS1
2   chr15   28650043       29054835  NM_001282468       GOLGA8M
3   chr15   28650043       29054835     NR_026589       WHAMMP2
4   chr15   28650043       29054835     NR_033351       GOLGA8F
5   chr15   28650043       29054835     NR_033353       GOLGA8G
6   chr15   28650043       29054835     NR_036443       HERC2P9
7   chr15   28650043       29054835     NR_036475  LOC100289656
8   chr15   28650043       29054835     NR_037599     PDCD6IPP2
9   chr15   28650043       29054835     NR_039734     MIR4509-3
11  chr15   30316125       30811680  NM_001282472       GOLGA8J
12  chr15   30316125       30811680  NM_001282484       GOLGA8R
13  chr15   30316125       30811680     NM_139320      CHRFAM7A
14  chr15   30316125       30811680     NR_026771  DKFZP434L187
15  chr15   30316125       30811680     NR_026859        ULK4P3
16  chr15   30316125       30811680     NR_033933       GOLGA8T
17   chr5  104052849      105351371     NR_000039       RAB9BP1
18   chr5  175390817      177940737     NM_000505           F12
19   chr5  175390817      177940737  NM_001004105          GRK6
20   chr5  175390817      177940737  NM_001029886          PFN3
21   chr5  175390817      177940737  NM_001031677         RAB24
22   chr5  175390817      177940737  NM_001034833          NHP2
23   chr5  175390817      177940737  NM_001079684      KIAA1191
24   chr5  175390817      177940737  NM_001099408       EIF4E1B
25   chr5  175390817      177940737  NM_001142935          MXD3
26   chr5  175390817      177940737  NM_001144875          DOK3
27   chr5  175390817      177940737  NM_001167579       SLC34A1
28   chr5  175390817      177940737  NM_001171976         CDHR2
29   chr5  175390817      177940737  NM_001174101          PRR7
31   chr5  175390817      177940737  NM_001190946       FAM193B
..    ...        ...            ...           ...           ...
53   chr5  175390817      177940737     NM_006261         PROP1
54   chr5  175390817      177940737     NM_006480         RGS14
55   chr5  175390817      177940737     NM_006816         LMAN2
56   chr5  175390817      177940737     NM_007255       B4GALT7
57   chr5  175390817      177940737     NM_014613          FAF2
58   chr5  175390817      177940737     NM_014901         RNF44
59   chr5  175390817      177940737     NM_015111         N4BP3
61   chr5  175390817      177940737     NM_017510         TMED9
63   chr5  175390817      177940737     NM_022455          NSD1
65   chr5  175390817      177940737     NM_031266       HNRNPAB
67   chr5  175390817      177940737     NM_032361         THOC3
68   chr5  175390817      177940737     NM_052899        GPRIN1
70   chr5  175390817      177940737     NM_130465       TSPAN17
71   chr5  175390817      177940737     NM_133369         UNC5A
72   chr5  175390817      177940737     NM_138820        HIGD2A
74   chr5  175390817      177940737     NM_173465       COL23A1
75   chr5  175390817      177940737     NM_173663       FAM153A
78   chr5  175390817      177940737     NR_003281       GMCL1P1
79   chr5  175390817      177940737     NR_003615     LOC728554
80   chr5  175390817      177940737     NR_026921     LOC202181
81   chr5  175390817      177940737     NR_031569       MIR1271
82   chr5  175390817      177940737     NR_036239       MIR4281
83   chr5  175390817      177940737     NR_036494     LOC643201
84   chr5  175390817      177940737     NR_038353       FAM153C
85   chr5  175390817      177940737     NR_038402  LOC100507387
86   chr5  175390817      177940737     NR_038915      PRR7-AS1
87   chr5  175390817      177940737     NR_045724          CLTB
88   chr5  175390817      177940737     NR_103794  LOC100996385
89   chr5  175390817      177940737     NR_108030     LINC01574
90   chr6  162437341      162971902     NM_013988         PARK2

[75 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr10   84018082       84228692  NM_001010848      NRG3
2  chr11    4304234        4407708  NM_001005161    OR52B4
3  chr11    4304234        4407708     NM_003141    TRIM21,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   21750816       21861149  NM_001170629          CHD8
1  chr14   21750816       21861149     NM_007192       SUPT16H
2  chr14   21750816       21861149     NM_020366       RPGRIP1
4  chr14   21750816       21861149     NR_003029        SNORD9
5   chr2   78162319       78583776     NR_024342        SNAR-H
6   chr2   78162319       78583776     NR_110287  LOC101927948
7   chr2   78162319       78583776     NR_110288  LOC101927967
8   chr9   30378581       30482248     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr12   16278848       16580941  NM_001170798        SLC15A5
1   chr12   16278848       16580941  NM_001267598          MGST1
6   chr14   21842978       22548692  NM_001001912          OR4E2
7   chr14   21842978       22548692  NM_001005465         OR10G3
8   chr14   21842978       22548692  NM_001005466         OR10G2
9   chr14   21842978       22548692  NM_001163380          RAB2B
10  chr14   21842978       22548692  NM_001170629           CHD8
11  chr14   21842978       22548692  NM_001303523           TOX4
12  chr14   21842978       22548692  NM_001317107          OR4E1
13  chr14   21842978       22548692     NM_007192        SUPT16H
14  chr14   21842978       22548692     NM_019852         METTL3
17  chr14   21842978       22548692     NR_002916         SNORD8
18  chr14   21842978       22548692     NR_003029         SNORD9
19  chr14   21842978       22548692     NR_111966          SALL2
21  chr14   75147421       75830192  NM_001039479          AREL1
22  chr14   75147421       75830192  NM_001040108           MLH3
23  chr14   75147421       75830192  NM_001080408          PROX2
24  chr14   75147421       75830192  NM_001207012            PGF
25  chr14   75147421       75830192  NM_001244883           DLST
26  chr14   75147421       75830192  NM_001318508           FCF1
27  chr14   75147421       75830192  NM_001329237           NEK9
29  chr14   75147421       75830192     NM_005252            FOS
30  chr14   75147421       75830192     NM_006827         TMED10
31  chr14   75147421       75830192     NM_014239         EIF2B2
33  chr14   75147421       75830192     NM_019589          YLPM1
34  chr14   75147421       75830192     NM_031464        RPS6KL1
35  chr14   75147421       75830192     NR_038421      LINC01220
36  chr14   75147421       75830192     NR_110315        ZC2HC1C
37  chr14   75147421       75830192     NR_126394          ACYP1
39  chr15   98261067       98390025     NR_024172      LINC00923
40  chr16    8636073        8792781     NM_020686           ABAT
41  chr16    8636073        8792781     NM_024109        METTL22
42  chr19    9393269        9529033  NM_001172650  ZNF559-ZNF177
43  chr19    9393269        9529033  NM_001172651         ZNF177
44  chr19    9393269        9529033  NM_001202406         ZNF559
47  chr19    9393269        9529033  NM_001271314         ZNF266
49  chr19    9393269        9529033     NM_198535         ZNF699
50   chr6    5162651        5279701  NM_001164840          LYRM4
52   chr6    5162651        5279701  NM_001318872          FARS2
55   chr6    5162651        5279701     NR_126015      LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   37928653       38064063     NR_135110  LOC105376633
1   chr14   47811882       47937851  NM_001113498         MDGA2
4   chr16    6324091        6569704  NM_001308117        RBFOX1
6   chr16   14674650       15031944  NM_001134477          PARN
7   chr16   14674650       15031944  NM_001277323        NPIPA3
9   chr16   14674650       15031944  NM_001277324        NPIPA2
11  chr16   14674650       15031944     NM_006985        NPIPA1
12  chr16   14674650       15031944     NM_014287         NOMO1
13  chr16   14674650       15031944     NM_016561          BFAR
14  chr16   14674650       15031944     NR_023387       ABCC6P2
15  chr16   14674650       15031944     NR_036140     MIR3179-1
16  chr16   14674650       15031944     NR_036141     MIR3180-1
17  chr16   14674650       15031944     NR_036142     MIR3180-2
18  chr16   14674650       15031944     NR_103772  LOC100288162
19  chr16   14674650       15031944     NR_106970     MIR6511A3
20  chr16   14674650       15031944     NR_107060     MIR6770-2
21  chr16   14674650       15031944     NR_128713     MIR3670-4
22  chr16   14674650       15031944     NR_133651       PLA2G10,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12830756       12969642  NM_001009611       PRAMEF4
1    chr1   12830756       12969642  NM_001013631      HNRNPCL1
2    chr1   12830756       12969642  NM_001080830      PRAMEF12
3    chr1   12830756       12969642  NM_001146181      HNRNPCL3
4    chr1   12830756       12969642  NM_001146344      PRAMEF11
5    chr1   12830756       12969642  NM_001294139       PRAMEF1
6    chr1   12830756       12969642  NM_001302551      HNRNPCL4
8    chr1   12830756       12969642     NM_023014       PRAMEF2
9    chr1  145058087      145171277  NM_001277444         NBPF9
10   chr1  145058087      145171277  NM_001278267        NBPF20
11   chr1  145058087      145171277     NM_004892        SEC22B
12   chr1  145058087      145171277     NM_022359       PDE4DIP
13  chr16   16407367       16838322  NM_001282511        NPIPA8
14  chr16   16407367       16838322     NR_036447        PKD1P1
15  chr16   16407367       16838322     NR_103772  LOC100288162
16  chr16   16407367       16838322     NR_106766     MIR6511A1
17  chr16   16407367       16838322     NR_106971     MIR6511A4
18  chr16   16407367       16838322     NR_107060     MIR6770-2
19   chr2   52000233       52217965     NR_135237     LOC730100
20   chr4  169184863      169335218  NM_001012967        DDX60L
22   chr4  169184863      169335218     NM_017631         DDX60
23   chr9   28477844       28626445  NM_001258282        LINGO2
25   chr9   41838344       41954507     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21825313       21931772  NM_001163380         RAB2B
1   chr14   21825313       21931772  NM_001170629          CHD8
2   chr14   21825313       21931772     NM_007192       SUPT16H
5   chr14   21825313       21931772     NR_002916        SNORD8
6   chr14   21825313       21931772     NR_003029        SNORD9
7   chr14   47869563       48469766  NM_001113498         MDGA2
8   chr14   47869563       48469766     NR_037503       MIR548Y
9   chr14   47869563       48469766     NR_039996     LINC00648
10   chr2  216245898      216375468  NM_001306129           FN1
13   chr2  216245898      216375468     NR_110607  LOC102724849
14  chr21   17828225       17952110     NR_027790      MIR99AHG
16  chr21   17828225       17952110     NR_029480      MIRLET7C
17  chr21   17828225       17952110     NR_029514        MIR99A
25   chr5   20403270       20645820  NM_001291956         CDH18,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143395800      144114957  NM_001123068       PPIAL4G
1    chr1  143395800      144114957  NM_001287385        FAM72C
2    chr1  143395800      144114957  NM_001345942        FAM72D
6    chr1  143395800      144114957     NR_104014     LINC01138
7    chr1  143395800      144114957     NR_106967       MIR6077
8    chr1  143395800      144114957     NR_111930  LOC100132057
10  chr22   17166915       17325825     NM_175878          XKR3
11  chr22   17166915       17325825     NR_003607       HSFY1P1
12  chr22   17166915       17325825     NR_134584  LOC101929350
13   chr5   24003686       24138431     NR_131245       C5orf17,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  243468251      243614503     NM_006642   SDCCAG8
1    chr1  243468251      243614503     NR_039824   MIR4677
2   chr14   21920433       22294136  NM_001001912     OR4E2
3   chr14   21920433       22294136  NM_001005465    OR10G3
4   chr14   21920433       22294136  NM_001005466    OR10G2
5   chr14   21920433       22294136  NM_001163380     RAB2B
6   chr14   21920433       22294136  NM_001303523      TOX4
7   chr14   21920433       22294136  NM_001317107     OR4E1
8   chr14   21920433       22294136     NM_019852    METTL3
10  chr14   21920433       22294136     NR_111966     SALL2
12  chr15   24411656       24876610     NR_026646     PWRN1
13  chr15   24411656       24876610     NR_026647     PWRN2
14  chr15   24411656       24876610     NR_130780     PWRN3
15  chr18   64323966       64793643     NR_049809   MIR5011,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21752460       22122684  NM_001005465        OR10G3
1   chr14   21752460       22122684  NM_001005466        OR10G2
2   chr14   21752460       22122684  NM_001163380         RAB2B
3   chr14   21752460       22122684  NM_001170629          CHD8
4   chr14   21752460       22122684  NM_001303523          TOX4
5   chr14   21752460       22122684     NM_007192       SUPT16H
6   chr14   21752460       22122684     NM_019852        METTL3
7   chr14   21752460       22122684     NM_020366       RPGRIP1
10  chr14   21752460       22122684     NR_002916        SNORD8
11  chr14   21752460       22122684     NR_003029        SNORD9
12  chr14   21752460       22122684     NR_111966         SALL2
14  chr14   55700935       55911348     NM_014924         ATG14
15  chr14   55700935       55911348     NM_017943        FBXO34
17  chr14   55700935       55911348     NM_199047         TBPL2
18  chr19   10275682       10618627     NM_000201         ICAM1
19  chr19   10275682       10618627  NM_001031734         FDX1L
20  chr19   10275682       10618627  NM_001103167         ZGLP1
21  chr19   10275682       10618627  NM_001111307         PDE4A
25  chr19   10275682       10618627  NM_001318730         DNMT1
26  chr19   10275682       10618627  NM_001320608         ICAM3
28  chr19   10275682       10618627     NM_001544         ICAM4
29  chr19   10275682       10618627     NM_003259         ICAM5
30  chr19   10275682       10618627     NM_003331          TYK2
31  chr19   10275682       10618627     NM_004230         S1PR2
33  chr19   10275682       10618627     NM_007065         CDC37
34  chr19   10275682       10618627     NM_012289         KEAP1
35  chr19   10275682       10618627     NM_015956         MRPL4
36  chr19   10275682       10618627     NM_133452        RAVER1
39  chr19   10275682       10618627     NR_031592       MIR1181
40  chr19   10275682       10618627     NR_036206       MIR4322
41  chr20   25323202       26000943  NM_001042472        ABHD12
42  chr20   25323202       26000943  NM_001290261        ZNF337
43  chr20   25323202       26000943  NM_001318226          NINL
46  chr20   25323202       26000943     NM_021067         GINS1
47  chr20   25323202       26000943     NM_152667          NANP
48  chr20   25323202       26000943     NR_004846  LOC100134868
49  chr20   25323202       26000943     NR_026714       FAM182B
51  chr20   25323202       26000943     NR_110001  LOC101926935
52  chr20   25323202       26000943     NR_110003  LOC101926955
53  chr20   25323202       26000943     NR_126465    ZNF337-AS1
56  chr20   25323202       26000943     NR_135006  LOC105372582
57  chr20   25323202       26000943     NR_135512  LOC105379511
58   chr5   17727514       19152780     NR_134286     LOC646241
60   chr5  104419355      104526112     NR_000039       RAB9BP1
61   chr5  167328894      167653430  NM_001080428         TENM2
63   chr7  152337938      152475173     NM_005431         XRCC2
64   chr7  152337938      152475173     NM_020445        ACTR3B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143098662      143215694     NR_110761  LOC102723769
1   chr14   47906614       48036184  NM_001113498         MDGA2
2   chr16   18313479       18550396  NM_001004060         NOMO2
3   chr16   18313479       18550396  NM_001282511        NPIPA8
4   chr16   18313479       18550396     NR_036140     MIR3179-1
5   chr16   18313479       18550396     NR_036142     MIR3180-2
6   chr16   18313479       18550396     NR_036144     MIR3180-3
7   chr16   18313479       18550396     NR_037442     MIR3670-1
8   chr16   18313479       18550396     NR_103772  LOC100288162
9   chr16   18313479       18550396     NR_106971     MIR6511A4
10  chr16   18313479       18550396     NR_107060     MIR6770-2
11  chr16   21488283       21749528  NM_001077180        METTL9
12  chr16   21488283       21749528  NM_001161683          OTOA
14  chr16   21488283       21749528     NM_005849         IGSF6
17  chr16   21488283       21749528     NR_002594      SLC7A5P2
18  chr16   21488283       21749528     NR_027155        SMG1P3
19  chr16   21488283       21749528     NR_049833     MIR3680-2
20  chr16   21488283       21749528     NR_110930  LOC101927814
21   chr2   95434244       95623375     NM_144705         TEKT4
22   chr2   95434244       95623375     NR_003366    ANKRD20A8P
23   chr2   95434244       95623375     NR_037597     LOC442028
24   chr4   94106025       94229496     NM_001510         GRID2
25   chr9   17225696       17342403  NM_001114395         CNTLN,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81428246       81532930  NM_001278495      NUTM2B
1   chr10   81428246       81532930     NR_027512     BEND3P3
2   chr10   81428246       81532930     NR_120611  NUTM2B-AS1
4   chr16   18472012       18630490  NM_001004060       NOMO2
5   chr16   18472012       18630490     NR_003569     ABCC6P1
6   chr16   18472012       18630490     NR_036140   MIR3179-1
7   chr16   18472012       18630490     NR_036142   MIR3180-2
8   chr16   18472012       18630490     NR_036144   MIR3180-3
9   chr16   18472012       18630490     NR_037442   MIR3670-1
10  chr16   18472012       18630490     NR_107060   MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  131371716      131544885  NM_001048209           NTM
1   chr11  131371716      131544885     NR_110140  LOC101929653
2   chr11  131371716      131544885     NR_126159       NTM-AS1
3   chr14   21895148       22085786  NM_001005465        OR10G3
4   chr14   21895148       22085786  NM_001163380         RAB2B
5   chr14   21895148       22085786  NM_001170629          CHD8
6   chr14   21895148       22085786  NM_001303523          TOX4
7   chr14   21895148       22085786     NM_019852        METTL3
10  chr14   21895148       22085786     NR_111966         SALL2
12  chr16   16386060       16512297  NM_001004067         NOMO3
13  chr16   16386060       16512297  NM_001282511        NPIPA8
14  chr16   16386060       16512297     NR_036140     MIR3179-1
15  chr16   16386060       16512297     NR_036141     MIR3180-1
16  chr16   16386060       16512297     NR_036142     MIR3180-2
17  chr16   16386060       16512297     NR_036447        PKD1P1
18  chr16   16386060       16512297     NR_103772  LOC100288162
19  chr16   16386060       16512297     NR_106766     MIR6511A1
20  chr16   16386060       16512297     NR_106971     MIR6511A4
21  chr16   16386060       16512297     NR_107060     MIR6770-2
22  chr16   16386060       16512297     NR_128713     MIR3670-4
23  chr20   14727653       14857961     NM_080676       MACROD2
24  chr20   21962116       22209007     NR_038394     LINC01432,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244987863      245286983  NM_001143943        EFCAB2
2    chr1  244987863      245286983  NM_001312871         COX20
4    chr1  244987863      245286983     NM_004501        HNRNPU
7    chr1  244987863      245286983     NR_111907  LOC101928068
8    chr1  244987863      245286983     NR_132782      SNORA100
9    chr1  245039474      245176709  NM_001143943        EFCAB2
12   chr1  245039474      245176709     NR_111907  LOC101928068
13  chr13   54691631       54845641     NR_108062     LINC00458
15  chr14   21829827       21950221  NM_001163380         RAB2B
16  chr14   21829827       21950221  NM_001170629          CHD8
17  chr14   21829827       21950221  NM_001303523          TOX4
18  chr14   21829827       21950221     NM_007192       SUPT16H
21  chr14   21829827       21950221     NR_002916        SNORD8
22  chr14   21829827       21950221     NR_003029        SNORD9
23   chr9   22156082       23333503     NM_022160        DMRTA1
24   chr9   22156082       23333503     NR_038977     LINC01239,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21832188       21988127  NM_001163380     RAB2B
1  chr14   21832188       21988127  NM_001170629      CHD8
2  chr14   21832188       21988127  NM_001303523      TOX4
3  chr14   21832188       21988127     NM_007192   SUPT16H
4  chr14   21832188       21988127     NM_019852    METTL3
7  chr14   21832188       21988127     NR_002916    SNORD8
8  chr14   21832188       21988127     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21852850       21963787  NM_001163380     RAB2B
1   chr14   21852850       21963787  NM_001170629      CHD8
2   chr14   21852850       21963787  NM_001303523      TOX4
5   chr14   21852850       21963787     NR_002916    SNORD8
6   chr14   21852850       21963787     NR_003029    SNORD9
7   chr15   28165385       28476162     NM_000275      OCA2
9   chr15   28165385       28476162     NM_004667     HERC2
10  chr15   36211097       36353101     NR_039735   MIR4510,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21799331       21920148  NM_001170629          CHD8
1   chr14   21799331       21920148     NM_007192       SUPT16H
2   chr14   21799331       21920148     NM_020366       RPGRIP1
4   chr14   21799331       21920148     NR_002916        SNORD8
5   chr14   21799331       21920148     NR_003029        SNORD9
6   chr16   21561406       21667000  NM_001077180        METTL9
8   chr16   21561406       21667000     NM_005849         IGSF6
9   chr16   21561406       21667000     NR_110930  LOC101927814
10  chr17   14078710       14294598  NM_001007530        CDRT15
11  chr17   14078710       14294598     NM_001303         COX10
12  chr17   14078710       14294598     NM_006041      HS3ST3B1
13  chr17   14078710       14294598     NR_026880      MGC12916
14  chr20   14629651       14932392     NM_080676       MACROD2
15  chr20   14629651       14932392     NR_037841   MACROD2-AS1
17   chr8      57716         572257  NM_001005504        OR4F21
18   chr8      57716         572257  NM_001042415        ZNF596
20   chr8      57716         572257  NM_001256113          TDRP
24   chr8      57716         572257  NM_001303100        ERICH1
25   chr8      57716         572257     NM_012173        FBXO25
27   chr8      57716         572257     NR_003572     RPL23AP53
28   chr8      57716         572257     NR_103537        FAM87A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    1537518        1859409     NM_018702        ADARB2
1   chr10    1537518        1859409     NR_033387    ADARB2-AS1
2    chr2   84654750       84781337     NM_001370         DNAH6
3    chr2   84654750       84781337     NM_003849        SUCLG1
4   chr22   17233706       17890402  NM_001037814          GAB4
5   chr22   17233706       17890402  NM_001163079         CECR6
6   chr22   17233706       17890402  NM_001282227         CECR1
8   chr22   17233706       17890402  NM_001289905        IL17RA
9   chr22   17233706       17890402  NM_001290046         CECR2
10  chr22   17233706       17890402     NM_017829         CECR5
13  chr22   17233706       17890402     NM_175878          XKR3
15  chr22   17233706       17890402     NR_003607       HSFY1P1
16  chr22   17233706       17890402     NR_015352         CECR7
17  chr22   17233706       17890402     NR_024482     CECR5-AS1
18  chr22   17233706       17890402     NR_038398         CECR3
19  chr22   17233706       17890402     NR_103793  LOC100996342,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21787606       22104273  NM_001005465     OR10G3
1   chr14   21787606       22104273  NM_001005466     OR10G2
2   chr14   21787606       22104273  NM_001163380      RAB2B
3   chr14   21787606       22104273  NM_001170629       CHD8
4   chr14   21787606       22104273  NM_001303523       TOX4
5   chr14   21787606       22104273     NM_007192    SUPT16H
6   chr14   21787606       22104273     NM_019852     METTL3
7   chr14   21787606       22104273     NM_020366    RPGRIP1
10  chr14   21787606       22104273     NR_002916     SNORD8
11  chr14   21787606       22104273     NR_003029     SNORD9
12  chr14   21787606       22104273     NR_111966      SALL2
14  chr17   48073288       48274705     NM_000088     COL1A1
15  chr17   48073288       48274705  NM_001199898       PDK2
18  chr17   48073288       48274705  NM_001257359     SAMD14
19  chr17   48073288       48274705     NM_002204      ITGA3
21  chr17   48073288       48274705     NM_032595    PPP1R9B
22  chr17   48073288       48274705     NR_024193      HILS1
23  chr17   48073288       48274705     NR_038230  LOC284080
24  chr17   48073288       48274705     NR_135553       SGCA
25  chr19   33110948       33250595  NM_001105570     NUDT19
26  chr19   33110948       33250595  NM_001110822     TDRD12
27  chr19   33110948       33250595     NM_032139    ANKRD27
28  chr19   33110948       33250595     NM_207391     RGS9BP
29  chr20   14624198       14827590     NM_080676    MACROD2
30   chr4   88545399       88739064     NM_004407       DMP1
31   chr4   88545399       88739064     NM_004967       IBSP
32   chr4   94170925       94317440     NM_001510      GRID2
33   chr7  110541897      110689964  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67250971       67374313     NM_000852         GSTP1
1   chr11   67250971       67374313  NM_001302959           AIP
2   chr11   67250971       67374313  NM_001318496         CABP2
4   chr11   67250971       67374313     NM_004910       PITPNM1
5   chr11   67250971       67374313     NM_005851       CDK2AP2
7   chr11   67250971       67374313     NR_106810       MIR6752
8   chr11   67250971       67374313     NR_130935      C11orf72
9   chr11   67317082       67461215     NM_000695       ALDH3B2
10  chr11   67317082       67461215     NM_000852         GSTP1
12  chr11   67317082       67461215  NM_001166102        NDUFV1
13  chr11   67317082       67461215  NM_001243750         NUDT8
14  chr11   67317082       67461215     NM_005995         TBX10
15  chr11   67317082       67461215     NM_080658          ACY3
17  chr11   67317082       67461215     NR_033791        DOC2GP
18  chr11   67317082       67461215     NR_130935      C11orf72
19  chr14   21853555       21955368  NM_001163380         RAB2B
20  chr14   21853555       21955368  NM_001170629          CHD8
21  chr14   21853555       21955368  NM_001303523          TOX4
24  chr14   21853555       21955368     NR_002916        SNORD8
25  chr14   21853555       21955368     NR_003029        SNORD9
26  chr16   76540513       76815825  NM_001322181       CNTNAP4
28  chr16   76540513       76815825     NR_110934  LOC101928203
29   chr7  110690368      110901351  NM_001099658         LRRN3
30   chr7  110690368      110901351  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  171306468      171594185     NM_002022          FMO4
1    chr1  171306468      171594185     NM_015172        PRRC2C
2    chr1  171306468      171594185     NR_002719        TOP1P1
3    chr1  244987831      245140348  NM_001143943        EFCAB2
5    chr1  244987831      245140348  NM_001312871         COX20
7    chr1  244987831      245140348     NM_004501        HNRNPU
10   chr1  244987831      245140348     NR_111907  LOC101928068
11   chr1  244987831      245140348     NR_132782      SNORA100
12  chr13   95325828       95510178     NM_007084         SOX21
13  chr13   95325828       95510178     NR_046514     SOX21-AS1
14  chr13   95325828       95510178     NR_110754  LOC101927284
15  chr13   95325828       95510178     NR_120417  LOC101927248
16  chr14   21800515       22017252  NM_001163380         RAB2B
17  chr14   21800515       22017252  NM_001170629          CHD8
18  chr14   21800515       22017252  NM_001303523          TOX4
19  chr14   21800515       22017252     NM_007192       SUPT16H
20  chr14   21800515       22017252     NM_019852        METTL3
21  chr14   21800515       22017252     NM_020366       RPGRIP1
24  chr14   21800515       22017252     NR_002916        SNORD8
25  chr14   21800515       22017252     NR_003029        SNORD9
26  chr14   21800515       22017252     NR_111966         SALL2
28   chr7   64040273       64550971  NM_001007253        ERV3-1
29   chr7   64040273       64550971  NM_001160183        ZNF138
30   chr7   64040273       64550971  NM_001282360        ZNF107
31   chr7   64040273       64550971     NM_015852        ZNF117
32   chr7   64040273       64550971     NM_021148        ZNF273
33   chr7   64040273       64550971     NR_033245     LOC641746
34   chr7   64040273       64550971     NR_033416        CCT6P3
36   chr7   64040273       64550971     NR_077227  LOC100128885
38   chr7   64040273       64550971     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143691810      143924538  NM_001123068       PPIAL4G
1    chr1  143691810      143924538  NM_001287385        FAM72C
2    chr1  143691810      143924538  NM_001345942        FAM72D
6    chr1  143691810      143924538     NR_104014     LINC01138
7    chr1  143691810      143924538     NR_111930  LOC100132057
9   chr14   21799437       21905681  NM_001170629          CHD8
10  chr14   21799437       21905681     NM_007192       SUPT16H
11  chr14   21799437       21905681     NM_020366       RPGRIP1
13  chr14   21799437       21905681     NR_002916        SNORD8
14  chr14   21799437       21905681     NR_003029        SNORD9
15  chr20    5173480        5281342     NM_003818          CDS2
16   chr3   72694737       72828570     NM_018130          SHQ1
17   chr3   72694737       72828570     NR_135531  LOC105377162
18   chr9   67145829       67282262     NR_002817        AQP7P1,    chrom  cnv_start  cnv_terminate    tx_name   gene_name
0  chr10   81499094       81628534  NR_029407   LOC642361
1  chr10   81499094       81628534  NR_120611  NUTM2B-AS1
4  chr12   86223712       86364753  NM_005447      RASSF9
5  chr12   86223712       86364753  NM_006183         NTS
6  chr14   21687722       21835004  NM_007192     SUPT16H
7  chr14   21687722       21835004  NM_020366     RPGRIP1
8  chr14   21687722       21835004  NM_031314      HNRNPC
9   chr7  146506156      146730048  NM_014141     CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  185932800      186215771     NM_031935         HMCN1
1   chr13   63284407       63799618     NR_047029     LINC00448
4   chr13   63284407       63799618     NR_126409     LINC00376
5   chr16    6736245        6848781  NM_001142334        RBFOX1
8   chr16   21486755       21823651  NM_001077180        METTL9
9   chr16   21486755       21823651  NM_001161683          OTOA
11  chr16   21486755       21823651     NM_005849         IGSF6
14  chr16   21486755       21823651     NR_002594      SLC7A5P2
15  chr16   21486755       21823651     NR_003370        RRN3P1
16  chr16   21486755       21823651     NR_027155        SMG1P3
17  chr16   21486755       21823651     NR_049833     MIR3680-2
18  chr16   21486755       21823651     NR_110930  LOC101927814
19  chr22   17230406       17338268     NM_175878          XKR3
20  chr22   17230406       17338268     NR_003607       HSFY1P1
21   chr3    1340004        1514728  NM_001289081         CNTN6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4192592        4319046     NR_047550  LOC100506082
1   chr12   72643503       73031683     NM_013381         TRHDE
2   chr12   72643503       73031683     NR_026836     TRHDE-AS1
4   chr13   59310847       60722043  NM_001042517        DIAPH3
9   chr13   59310847       60722043     NR_046539    DIAPH3-AS1
10  chr13   59310847       60722043     NR_046540    DIAPH3-AS2
13  chr15   28701417       28836656     NR_033351       GOLGA8F
14  chr15   28701417       28836656     NR_033353       GOLGA8G
15  chr15   28701417       28836656     NR_039734     MIR4509-3
16   chr9   39063684       39213265     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16387799       16668668  NM_001004067         NOMO3
1   chr16   16387799       16668668  NM_001282511        NPIPA8
2   chr16   16387799       16668668     NR_036140     MIR3179-1
3   chr16   16387799       16668668     NR_036141     MIR3180-1
4   chr16   16387799       16668668     NR_036142     MIR3180-2
5   chr16   16387799       16668668     NR_036447        PKD1P1
6   chr16   16387799       16668668     NR_103772  LOC100288162
7   chr16   16387799       16668668     NR_106766     MIR6511A1
8   chr16   16387799       16668668     NR_106971     MIR6511A4
9   chr16   16387799       16668668     NR_107060     MIR6770-2
10  chr16   16387799       16668668     NR_128713     MIR3670-4
11   chr6  155409669      155523557     NM_012454         TIAM2
12   chr9   31255829       31384548     NR_135134     LINC01243,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   27217949       27322400  NM_001080406  C12orf71
1   chr14   21937973       22045870  NM_001005465    OR10G3
2   chr14   21937973       22045870  NM_001163380     RAB2B
3   chr14   21937973       22045870  NM_001303523      TOX4
4   chr14   21937973       22045870     NM_019852    METTL3
6   chr14   21937973       22045870     NR_111966     SALL2
8   chr14   21850557       22048564  NM_001005465    OR10G3
9   chr14   21850557       22048564  NM_001163380     RAB2B
10  chr14   21850557       22048564  NM_001170629      CHD8
11  chr14   21850557       22048564  NM_001303523      TOX4
12  chr14   21850557       22048564     NM_007192   SUPT16H
13  chr14   21850557       22048564     NM_019852    METTL3
16  chr14   21850557       22048564     NR_002916    SNORD8
17  chr14   21850557       22048564     NR_003029    SNORD9
18  chr14   21850557       22048564     NR_111966     SALL2
20  chr22   19873397       20012575     NM_000754      COMT
23  chr22   19873397       20012575  NM_001282512    TXNRD2
24  chr22   19873397       20012575  NM_001283116    TANGO2
27  chr22   19873397       20012575     NM_001670     ARVCF
30  chr22   19873397       20012575     NR_039918   MIR4761
31   chr8   48456494       48558997  NM_001080394     SPIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    7100934        7201663  NM_001018039        SFMBT2
2   chr14   27006032       27269524     NM_002515         NOVA1
4   chr14   27006032       27269524     NR_110033  LOC101927062
5   chr15   42699948       42804399  NM_001284306        ZNF106
7   chr15   42699948       42804399     NM_003825        SNAP23
8   chr15   42699948       42804399     NM_173087         CAPN3
11  chr15   79704337       79817987  NM_001330376         TMED3
12  chr15   79704337       79817987     NM_015206      KIAA1024
13  chr20   14720279       15017939     NM_080676       MACROD2
14  chr20   14720279       15017939     NR_037841   MACROD2-AS1
16   chr7  145955145      146123040     NM_014141       CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21855961       22065801  NM_001005465     OR10G3
1   chr14   21855961       22065801  NM_001163380      RAB2B
2   chr14   21855961       22065801  NM_001170629       CHD8
3   chr14   21855961       22065801  NM_001303523       TOX4
4   chr14   21855961       22065801     NM_019852     METTL3
7   chr14   21855961       22065801     NR_002916     SNORD8
8   chr14   21855961       22065801     NR_003029     SNORD9
9   chr14   21855961       22065801     NR_111966      SALL2
11   chr2   51326477       51622982     NR_135237  LOC730100
12   chr4  184385111      184495444  NM_001291959       ING2
14   chr4  184385111      184495444     NR_033995  LOC389247,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  144051558      144716479  NM_001135789    PPIAL4C
1   chr1  144051558      144716479  NM_001277444      NBPF9
2   chr1  144051558      144716479  NM_001278267     NBPF20
3   chr1  144051558      144716479     NR_003242     PFN1P2
4   chr1  144051558      144716479     NR_024511  LINC00623
6   chr1  144051558      144716479     NR_102405      NBPF8
7   chr1  144051558      144716479     NR_111953  LINC00869
8   chr9   39115742       39434173  NM_001085452  SPATA31A1
9   chr9   39115742       39434173     NM_033655    CNTNAP3
10  chr9   39115742       39434173     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12  120588298      120731817     NM_002859       PXN
1   chr12  120588298      120731817     NM_006836      GCN1
3   chr12  120588298      120731817     NM_053275     RPLP0
4   chr12  120588298      120731817     NR_038924   PXN-AS1
5   chr12  120588298      120731817     NR_039719   MIR4498
6   chr14   21879558       22044145  NM_001005465    OR10G3
7   chr14   21879558       22044145  NM_001163380     RAB2B
8   chr14   21879558       22044145  NM_001170629      CHD8
9   chr14   21879558       22044145  NM_001303523      TOX4
10  chr14   21879558       22044145     NM_019852    METTL3
13  chr14   21879558       22044145     NR_111966     SALL2
15  chr15   30276501       30392098  NM_001282472   GOLGA8J
16   chr9   41864456       42016045     NR_003670    FGF7P3
17   chr9   41864456       42016045     NR_015363     GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245001283      245849227  NM_001143943        EFCAB2
2    chr1  245001283      245849227  NM_001312871         COX20
4    chr1  245001283      245849227     NM_004501        HNRNPU
5    chr1  245001283      245849227     NM_018012        KIF26B
8    chr1  245001283      245849227     NR_111907  LOC101928068
9    chr1  245001283      245849227     NR_132782      SNORA100
10  chr14   21901617       22271841  NM_001001912         OR4E2
11  chr14   21901617       22271841  NM_001005465        OR10G3
12  chr14   21901617       22271841  NM_001005466        OR10G2
13  chr14   21901617       22271841  NM_001163380         RAB2B
14  chr14   21901617       22271841  NM_001303523          TOX4
15  chr14   21901617       22271841  NM_001317107         OR4E1
16  chr14   21901617       22271841     NM_019852        METTL3
17  chr14   21901617       22271841     NM_020920          CHD8
19  chr14   21901617       22271841     NR_111966         SALL2
21  chr14   21916541       22376323  NM_001001912         OR4E2
22  chr14   21916541       22376323  NM_001005465        OR10G3
23  chr14   21916541       22376323  NM_001005466        OR10G2
24  chr14   21916541       22376323  NM_001163380         RAB2B
25  chr14   21916541       22376323  NM_001303523          TOX4
26  chr14   21916541       22376323  NM_001317107         OR4E1
27  chr14   21916541       22376323     NM_019852        METTL3
29  chr14   21916541       22376323     NR_111966         SALL2
31   chr3  196758075      196880861  NM_001204386          DLG1
34   chr7   75788033       75903612  NM_001110199         SRRM3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr19   23476079       23583434  NM_001300951      ZNF91
1  chr19   23476079       23583434     NR_126448  LINC01224
2   chr3   60342825       60446708  NM_001320899       FHIT
3   chr4   94131702       94253446     NM_001510      GRID2
4   chr9   17172886       17361322  NM_001114395      CNTLN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12820504       13306913  NM_001009611       PRAMEF4
1    chr1   12820504       13306913  NM_001010889       PRAMEF6
2    chr1   12820504       13306913  NM_001010890       PRAMEF9
3    chr1   12820504       13306913  NM_001012276       PRAMEF8
4    chr1   12820504       13306913  NM_001013407       PRAMEF5
5    chr1   12820504       13306913  NM_001013631      HNRNPCL1
6    chr1   12820504       13306913  NM_001080830      PRAMEF12
7    chr1   12820504       13306913  NM_001099850      PRAMEF18
8    chr1   12820504       13306913  NM_001100631      PRAMEF22
9    chr1   12820504       13306913  NM_001136561      HNRNPCL2
10   chr1   12820504       13306913  NM_001146181      HNRNPCL3
11   chr1   12820504       13306913  NM_001146344      PRAMEF11
12   chr1   12820504       13306913  NM_001294139       PRAMEF1
13   chr1   12820504       13306913  NM_001302551      HNRNPCL4
14   chr1   12820504       13306913  NM_001306072      PRAMEF26
15   chr1   12820504       13306913  NM_001310134      PRAMEF25
17   chr1   12820504       13306913     NM_023014       PRAMEF2
18   chr1   12820504       13306913     NM_152290      C1orf158
19   chr1   12820504       13306913     NR_111945     PRAMEF36P
21   chr1  143592302      144030360  NM_001123068       PPIAL4G
22   chr1  143592302      144030360  NM_001287385        FAM72C
23   chr1  143592302      144030360  NM_001345942        FAM72D
27   chr1  143592302      144030360     NR_104014     LINC01138
28   chr1  143592302      144030360     NR_106967       MIR6077
29   chr1  143592302      144030360     NR_111930  LOC100132057
31  chr16   21817283       21990563  NM_001310148        NPIPB4
32  chr16   21817283       21990563     NM_003366        UQCRC2
33  chr16   21817283       21990563     NR_003370        RRN3P1
34   chr5   66205425       66708478  NM_001164664         MAST4
38   chr5   66205425       66708478     NM_005582         CD180
40   chr5   66205425       66708478     NR_111908     MAST4-AS1
41   chr7  110561769      110945295  NM_001099658         LRRN3
42   chr7  110561769      110945295  NM_001244606        IMMP2L
44   chr8  110254658      110354956  NM_001128211        NUDCD1
45   chr8  110254658      110354956  NM_001193557          ENY2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21801561       21960903  NM_001163380      RAB2B
1   chr14   21801561       21960903  NM_001170629       CHD8
2   chr14   21801561       21960903  NM_001303523       TOX4
3   chr14   21801561       21960903     NM_007192    SUPT16H
4   chr14   21801561       21960903     NM_020366    RPGRIP1
7   chr14   21801561       21960903     NR_002916     SNORD8
8   chr14   21801561       21960903     NR_003029     SNORD9
9    chr5    6099439        6617731  NM_001145161    UBE2QL1
10   chr5    6099439        6617731     NM_032286      MED10
11   chr5    6099439        6617731     NR_024423  LINC01018
13   chr5    6099439        6617731     NR_028351   FLJ33360
14   chr5    6099439        6617731     NR_037947      NSUN2
15   chr7  110659085      110970398  NM_001099658      LRRN3
16   chr7  110659085      110970398  NM_001244606     IMMP2L
18   chr9   28203229       28554221  NM_001258282     LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87687936       88352857  NM_001290053  LOC101927844
1    chr1   87687936       88352857     NM_006769          LMO4
2    chr1   87687936       88352857     NR_038324     LINC01364
3    chr2  129476238      129797252     NR_110278  LOC101927881
4   chr20   14867400       15072475     NM_080676       MACROD2
5   chr20   14867400       15072475     NR_037841   MACROD2-AS1
7   chr20   41089428       41229893     NM_133170         PTPRT
8    chr3  162920021      163035600     NR_033945     LINC01192
9    chr9   41887837       42032510     NR_003670        FGF7P3
10   chr9   41887837       42032510     NR_015363         GLIDR
13   chr9   41887837       42032510     NR_126048  LOC102724238
14   chr9   41887837       42032510     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   55793281       56086519  NM_001142770        PCDH15
3   chr15   20668502       20916680  NM_001145004      GOLGA6L6
4   chr15   20668502       20916680     NR_027411      GOLGA8CP
5   chr15   20668502       20916680     NR_027992        NBEAP1
6   chr15   20668502       20916680     NR_036432       HERC2P3
7   chr17   64535090       64678558     NM_002737         PRKCA
8   chr22   17253418       17657082  NM_001037814          GAB4
9   chr22   17253418       17657082  NM_001163079         CECR6
10  chr22   17253418       17657082  NM_001289905        IL17RA
11  chr22   17253418       17657082     NM_017829         CECR5
14  chr22   17253418       17657082     NM_175878          XKR3
15  chr22   17253418       17657082     NR_003607       HSFY1P1
16  chr22   17253418       17657082     NR_015352         CECR7
17  chr22   17253418       17657082     NR_024482     CECR5-AS1
18  chr22   17253418       17657082     NR_103793  LOC100996342
19   chr7      73265         431528  NM_001195127  WI2-2373I1.2
20   chr7      73265         431528     NM_020223        FAM20C
21   chr7      73265         431528     NR_033960     LOC442497
22   chr7      73265         431528     NR_108065  LOC100507642
23   chr7      73265         431528     NR_134324  LOC105375115
24   chr7      73265         431528     NR_134325  LOC102723672
25   chr7  110672780      110783321  NM_001099658         LRRN3
26   chr7  110672780      110783321  NM_001244606        IMMP2L
28   chr9   74656229       75291658  NM_001102420        ZFAND5
29   chr9   74656229       75291658  NM_001128618       C9orf57
30   chr9   74656229       75291658  NM_001242505           GDA
33   chr9   74656229       75291658     NM_138691          TMC1
34   chr9   74656229       75291658     NR_110952     LINC01504,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   21790646       21911754  NM_001170629       CHD8
1  chr14   21790646       21911754     NM_007192    SUPT16H
2  chr14   21790646       21911754     NM_020366    RPGRIP1
4  chr14   21790646       21911754     NR_002916     SNORD8
5  chr14   21790646       21911754     NR_003029     SNORD9
6  chr16   70017017       70127976     NR_003610    PDXDC2P
7  chr16   70017017       70127976     NR_036265  MIR1972-2
8   chr9   41860394       41962637     NR_003670     FGF7P3
9   chr9   41860394       41962637     NR_015363      GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21757557       21932281  NM_001163380         RAB2B
1   chr14   21757557       21932281  NM_001170629          CHD8
2   chr14   21757557       21932281     NM_007192       SUPT16H
3   chr14   21757557       21932281     NM_020366       RPGRIP1
6   chr14   21757557       21932281     NR_002916        SNORD8
7   chr14   21757557       21932281     NR_003029        SNORD9
8    chr4  169230864      171915320  NM_001012967        DDX60L
9    chr4  169230864      171915320  NM_001166108         PALLD
12   chr4  169230864      171915320  NM_001243372         CLCN3
14   chr4  169230864      171915320  NM_001286682         AADAT
17   chr4  169230864      171915320  NM_001301647        MFAP3L
19   chr4  169230864      171915320     NM_012224          NEK1
21   chr4  169230864      171915320     NM_017631         DDX60
22   chr4  169230864      171915320     NM_017867          HPF1
23   chr4  169230864      171915320     NM_020870        SH3RF1
24   chr4  169230864      171915320     NM_032783          CBR4
25   chr4  169230864      171915320     NR_037878  LOC100506085
26   chr4  169230864      171915320     NR_125889     LINC01612
28   chr4  169230864      171915320     NR_134683  LOC100506107
29   chr7   14855224       15048889     NM_004080          DGKB
31   chr7   75815693       75963940  NM_001110199         SRRM3
32   chr7   75815693       75963940     NM_001540         HSPB1
33   chr7   75815693       75963940     NM_012479         YWHAG
34   chr8  100653635      100800000     NM_017890        VPS13B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4185124        4457978  NM_001005161        OR52B4
1   chr11    4185124        4457978     NM_003141        TRIM21
2   chr11    4185124        4457978     NR_047550  LOC100506082
3   chr14   21837586       22006966  NM_001163380         RAB2B
4   chr14   21837586       22006966  NM_001170629          CHD8
5   chr14   21837586       22006966  NM_001303523          TOX4
6   chr14   21837586       22006966     NM_007192       SUPT16H
7   chr14   21837586       22006966     NM_019852        METTL3
10  chr14   21837586       22006966     NR_002916        SNORD8
11  chr14   21837586       22006966     NR_003029        SNORD9
12  chr14   21837586       22006966     NR_111966         SALL2
14   chr7  157357651      158205595  NM_001308267        PTPRN2
16   chr7  157357651      158205595     NR_029689      MIR153-2
17   chr7  157357651      158205595     NR_038966  LOC100506585,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr13   54078260       54743181     NR_047488          LINC00558
1   chr13   54078260       54743181     NR_108062          LINC00458
3   chr14   21792210       21969920  NM_001163380              RAB2B
4   chr14   21792210       21969920  NM_001170629               CHD8
5   chr14   21792210       21969920  NM_001303523               TOX4
6   chr14   21792210       21969920     NM_007192            SUPT16H
7   chr14   21792210       21969920     NM_019852             METTL3
8   chr14   21792210       21969920     NM_020366            RPGRIP1
11  chr14   21792210       21969920     NR_002916             SNORD8
12  chr14   21792210       21969920     NR_003029             SNORD9
13  chr16   12207828       12514016     NM_032167              SNX29
14  chr16   68612169       69011745  NM_001317184               CDH1
15  chr16   68612169       69011745  NM_001317195               CDH3
16  chr16   68612169       69011745     NM_024562             TANGO6
17  chr16   68612169       69011745     NR_106988          MIR7641-2
18  chr18   67060323       67217934     NM_152721               DOK6
19  chr18   67060323       67217934     NR_134579       LOC105372179
20  chr22   17087924       17206627     NR_001591             TPTEP1
21  chr22   17087924       17206627     NR_040115  ANKRD62P1-PARP4P3
22   chr3  196773020      196972273  NM_001204386               DLG1
25   chr4  169255760      169540182  NM_001012967             DDX60L
26   chr4  169255760      169540182  NM_001166108              PALLD
28   chr7  110625223      110823877  NM_001099658              LRRN3
29   chr7  110625223      110823877  NM_001244606             IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  245053835      245165520  NM_001143943        EFCAB2
3   chr1  245053835      245165520     NR_111907  LOC101928068
4   chr2  186567660      186770679     NM_173651         FSIP2
5   chr2  186567660      186770679     NR_110214  LOC101927196
8   chr2  186567660      186770679     NR_144453     FSIP2-AS1
10  chr9  116781832      116901543  NM_001318041        ZNF618
11  chr9  116781832      116901543     NM_001633          AMBP
12  chr9  116781832      116901543     NM_138424         KIF12,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21772711       21879988  NM_001170629      CHD8
1   chr14   21772711       21879988     NM_007192   SUPT16H
2   chr14   21772711       21879988     NM_020366   RPGRIP1
4   chr14   21772711       21879988     NR_002916    SNORD8
5   chr14   21772711       21879988     NR_003029    SNORD9
6    chr2   97285212       97560501  NM_001115016    KANSL3
7    chr2   97285212       97560501  NM_001122646   FAM178B
9    chr2   97285212       97560501  NM_001293083    FER1L5
10   chr2   97285212       97560501  NM_001322354    LMAN2L
11   chr2   97285212       97560501     NM_016466   ANKRD39
13   chr2   97285212       97560501     NM_017623     CNNM3
14   chr2   97285212       97560501     NM_017789    SEMA4C
15   chr2   97285212       97560501     NM_020184     CNNM4
17   chr2   97285212       97560501     NM_144994   ANKRD23
18   chr2   97285212       97560501     NR_036074   MIR3127
20   chr6  162461862      163132351     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143538035      143824203  NM_001123068       PPIAL4G
1    chr1  143538035      143824203     NR_104014     LINC01138
2    chr1  143538035      143824203     NR_106967       MIR6077
3    chr1  143538035      143824203     NR_111930  LOC100132057
4   chr10   67697644       67808785  NM_001127384        CTNNA3
6    chr7  143728041      144062500  NM_001001659        OR2A14
7    chr7  143728041      144062500  NM_001003702      ARHGEF35
8    chr7  143728041      144062500  NM_001004135        OR2A12
9    chr7  143728041      144062500  NM_001004488        OR2A25
10   chr7  143728041      144062500  NM_001005287         OR2A1
12   chr7  143728041      144062500  NM_001005328         OR2A7
13   chr7  143728041      144062500  NM_001005480         OR2A2
14   chr7  143728041      144062500  NM_001278507        CTAGE8
15   chr7  143728041      144062500     NM_005435       ARHGEF5
16   chr7  143728041      144062500     NM_012365         OR2A5
17   chr7  143728041      144062500     NM_198495        CTAGE4
19   chr7  143728041      144062500     NR_002157        OR2A9P
21   chr7  143728041      144062500     NR_002158       OR2A20P
23   chr7  143728041      144062500     NR_033942     ARHGEF34P
24   chr7  143728041      144062500     NR_126022  LOC101928605
25   chr7  143728041      144062500     NR_126023     OR2A1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21799470       21916411  NM_001170629          CHD8
1   chr14   21799470       21916411     NM_007192       SUPT16H
2   chr14   21799470       21916411     NM_020366       RPGRIP1
4   chr14   21799470       21916411     NR_002916        SNORD8
5   chr14   21799470       21916411     NR_003029        SNORD9
6   chr17   78224851       78327711  NM_001166349      SLC26A11
7   chr17   78224851       78327711  NM_001256071        RNF213
9   chr17   78224851       78327711     NR_029376  LOC100294362
10   chr8  111872651      111985574     NR_125417     LINC01608,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12789815       13967236  NM_001006624          PDPN
1    chr1   12789815       13967236  NM_001009611       PRAMEF4
2    chr1   12789815       13967236  NM_001010847        LRRC38
3    chr1   12789815       13967236  NM_001010889       PRAMEF6
5    chr1   12789815       13967236  NM_001010890       PRAMEF9
6    chr1   12789815       13967236  NM_001012276       PRAMEF8
9    chr1   12789815       13967236  NM_001013407       PRAMEF5
11   chr1   12789815       13967236  NM_001013631      HNRNPCL1
12   chr1   12789815       13967236  NM_001024661      PRAMEF14
14   chr1   12789815       13967236  NM_001039361      PRAMEF10
16   chr1   12789815       13967236  NM_001080830      PRAMEF12
17   chr1   12789815       13967236  NM_001098376      PRAMEF15
19   chr1   12789815       13967236  NM_001099790      PRAMEF19
21   chr1   12789815       13967236  NM_001099850      PRAMEF18
23   chr1   12789815       13967236  NM_001099851      PRAMEF17
25   chr1   12789815       13967236  NM_001099852      PRAMEF20
27   chr1   12789815       13967236  NM_001100631      PRAMEF22
29   chr1   12789815       13967236  NM_001136561      HNRNPCL2
30   chr1   12789815       13967236  NM_001146181      HNRNPCL3
31   chr1   12789815       13967236  NM_001146344      PRAMEF11
32   chr1   12789815       13967236  NM_001291381     PRAMEF33P
34   chr1   12789815       13967236  NM_001294139       PRAMEF1
35   chr1   12789815       13967236  NM_001300891      PRAMEF27
38   chr1   12789815       13967236  NM_001302551      HNRNPCL4
39   chr1   12789815       13967236  NM_001306072      PRAMEF26
40   chr1   12789815       13967236  NM_001310134      PRAMEF25
42   chr1   12789815       13967236     NM_023014       PRAMEF2
43   chr1   12789815       13967236     NM_152290      C1orf158
45   chr1   12789815       13967236     NR_111945     PRAMEF36P
47   chr1   76011815       76113349  NM_001130058       SLC44A5
51  chr15   28798603       29126234  NM_001282468       GOLGA8M
52  chr15   28798603       29126234     NR_026589       WHAMMP2
53  chr15   28798603       29126234     NR_036443       HERC2P9
54  chr15   28798603       29126234     NR_036475  LOC100289656
55  chr15   28798603       29126234     NR_037599     PDCD6IPP2
56  chr15   28798603       29126234     NR_047567     GOLGA6L7P
57   chr4   69280021       69468818     NM_001077       UGT2B17
58   chr4   69280021       69468818     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   86154290       86313846     NM_017953        ZNHIT6
1    chr1   86154290       86313846     NM_152890       COL24A1
2   chr11  131356934      131603597  NM_001048209           NTM
3   chr11  131356934      131603597     NR_110140  LOC101929653
4   chr11  131356934      131603597     NR_126159       NTM-AS1
5   chr16   16448174       17423540  NM_001282511        NPIPA8
6   chr16   16448174       17423540     NM_022166         XYLT1
7   chr16   16448174       17423540     NR_106971     MIR6511A4
8   chr16   16448174       17423540     NR_135179  LOC102723692
9   chr17   47856096       47959694  NM_001077503          TAC4
10  chr17   47856096       47959694  NM_001199158          KAT7
11  chr17   47856096       47959694  NM_001242791      FLJ45513
12   chr7   12240166       12369957  NM_001134232      TMEM106B,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  108421417      109200465  NM_001010883      FAM102B
1    chr1  108421417      109200465  NM_001102592       HENMT1
2    chr1  108421417      109200465  NM_001143988        NBPF6
3    chr1  108421417      109200465  NM_001143989        NBPF4
4    chr1  108421417      109200465     NM_006113         VAV3
5    chr1  108421417      109200465     NM_013386     SLC25A24
8    chr1  108421417      109200465     NR_046653     VAV3-AS1
9    chr1  108421417      109200465     NR_107006      MIR7852
10  chr11   48392451       48521891  NM_001005512       OR4A47
11   chr2   24948267       26551185     NM_000182        HADHA
12   chr2   24948267       26551185  NM_001013663       PTRHD1
13   chr2   24948267       26551185  NM_001145168       ADGRF3
15   chr2   24948267       26551185  NM_001168241       GAREM2
17   chr2   24948267       26551185  NM_001198559      DNAJC27
18   chr2   24948267       26551185  NM_001256304         DTNB
20   chr2   24948267       26551185  NM_001281513        HADHB
21   chr2   24948267       26551185  NM_001319099        EFR3B
22   chr2   24948267       26551185  NM_001319205         POMC
23   chr2   24948267       26551185  NM_001320613        ADCY3
24   chr2   24948267       26551185  NM_001320892       DNMT3A
29   chr2   24948267       26551185  NM_001322101        CENPO
30   chr2   24948267       26551185     NM_002254        KIF3C
31   chr2   24948267       26551185     NM_003743        NCOA1
33   chr2   24948267       26551185     NM_016131        RAB10
34   chr2   24948267       26551185     NM_018263        ASXL2
40   chr2   24948267       26551185     NR_031570      MIR1301
41   chr2   24948267       26551185     NR_034113  DNAJC27-AS1
42   chr2   24948267       26551185     NR_132378    LINC01381
44  chr22   17240397       17395093     NM_175878         XKR3
45  chr22   17240397       17395093     NR_003607      HSFY1P1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   45635821       45779289  NM_001308133     FANCM
2   chr14   45635821       45779289     NM_018353  MIS18BP1
3    chr4   71385638       71608437  NM_001037442     RUFY3
5    chr4   71385638       71608437  NM_001286731      AMTN
9    chr4   71385638       71608437     NM_016519      AMBN
10   chr4   71385638       71608437     NM_020368      UTP3
11   chr4   71385638       71608437     NM_031889      ENAM
12   chr4   71385638       71608437     NM_144646    JCHAIN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12    9359031        9482257     NM_002864           PZP
1   chr12    9359031        9482257     NR_024374     LOC642846
2   chr12    9359031        9482257     NR_036466     LINC00987
3   chr12    9359031        9482257     NR_040112         A2MP1
4   chr12    9359031        9482257     NR_128710     MIR1244-4
6   chr14   21920462       22020760  NM_001163380         RAB2B
7   chr14   21920462       22020760  NM_001303523          TOX4
8   chr14   21920462       22020760     NM_019852        METTL3
10  chr14   21920462       22020760     NR_111966         SALL2
12   chr7  143029271      143138354     NM_000083         CLCN1
13   chr7  143029271      143138354  NM_001278297       FAM131B
14   chr7  143029271      143138354  NM_001322263  LOC100507507
15   chr7  143029271      143138354     NM_003461           ZYX
16   chr7  143029271      143138354     NM_005232         EPHA1
18   chr7  143029271      143138354     NR_033897     EPHA1-AS1
19   chr7  143029271      143138354     NR_106952       MIR6892
20   chr9   30355704       30483415     NR_046204     LINC01242,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  145311683      145484852  NM_001039888      ANKRD34A
1   chr1  145311683      145484852  NM_001277444         NBPF9
2   chr1  145311683      145484852  NM_001278267        NBPF20
3   chr1  145311683      145484852  NM_001302371        NBPF10
4   chr1  145311683      145484852  NM_001313972         TXNIP
6   chr1  145311683      145484852     NM_032305       POLR3GL
7   chr1  145311683      145484852     NM_145277          HFE2
8   chr1  145311683      145484852     NM_153713         LIX1L
9   chr1  145311683      145484852     NR_104217       NBPF25P
10  chr1  145311683      145484852     NR_125967  LOC101928979
11  chr3   60352062       60604393  NM_001320899          FHIT
12  chr3   60352062       60604393     NR_128708      MIR548BB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15  100106280      102225409  NM_001040616         LINS1
1   chr15  100106280      102225409  NM_001130928         MEF2A
2   chr15  100106280      102225409  NM_001284417        LYSMD4
4   chr15  100106280      102225409  NM_001290341         CERS3
7   chr15  100106280      102225409  NM_001291309         PCSK6
8   chr15  100106280      102225409  NM_001293815       ALDH1A3
9   chr15  100106280      102225409  NM_001307960         TM2D3
10  chr15  100106280      102225409     NM_003090        SNRPA1
12  chr15  100106280      102225409     NM_014918         CHSY1
13  chr15  100106280      102225409     NM_018445       SELENOS
14  chr15  100106280      102225409     NM_024652         LRRK1
15  chr15  100106280      102225409     NM_024708          ASB7
20  chr15  100106280      102225409     NM_139057      ADAMTS17
21  chr15  100106280      102225409     NM_152334        TARSL2
24  chr15  100106280      102225409     NR_003260       DNM1P46
25  chr15  100106280      102225409     NR_028139       SPATA41
27  chr15  100106280      102225409     NR_045387  LOC100507472
28  chr15  100106280      102225409     NR_073405        PRKXP1
29  chr15  100106280      102225409     NR_120374     CERS3-AS1
30  chr15  100106280      102225409     NR_132373     PCSK6-AS1
31  chr15  100106280      102225409     NR_135693  LOC102723335
32  chr15  100106280      102225409     NR_135737     LOC400464
33  chr15  100106280      102225409     NR_135827  LOC101927751
35  chr16   29538553       29666096     NR_049833     MIR3680-2
36  chr16   29538553       29666096     NR_135305        SMG1P2
38   chr2   51115588       51282974  NM_001330079         NRXN1
41   chr2   51115588       51282974     NR_135237     LOC730100
42  chr20   14786141       15110691     NM_080676       MACROD2
43  chr20   14786141       15110691     NR_037841   MACROD2-AS1
45   chr9   30601045       31561628     NR_135134     LINC01243,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   91921531       92350368  NM_001134419          CDC7
2    chr1   91921531       92350368  NM_001195683        TGFBR3
4   chr12   20875290       21027141  NM_001145946       SLCO1C1
6   chr12   20875290       21027141     NM_019844       SLCO1B3
7    chr2  186303931      186649600     NM_173651         FSIP2
8    chr2  186303931      186649600     NR_110214  LOC101927196
11   chr2  186303931      186649600     NR_144453     FSIP2-AS1
12   chr5   99269911       99834433     NR_027503  LOC100133050
13   chr7   64111741       64268449  NM_001160183        ZNF138
14   chr7   64111741       64268449  NM_001282360        ZNF107
17   chr7   64111741       64268449     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21807273       22645366  NM_001001912         OR4E2
1   chr14   21807273       22645366  NM_001005465        OR10G3
2   chr14   21807273       22645366  NM_001005466        OR10G2
3   chr14   21807273       22645366  NM_001163380         RAB2B
4   chr14   21807273       22645366  NM_001170629          CHD8
5   chr14   21807273       22645366  NM_001303523          TOX4
6   chr14   21807273       22645366  NM_001317107         OR4E1
7   chr14   21807273       22645366     NM_007192       SUPT16H
8   chr14   21807273       22645366     NM_019852        METTL3
9   chr14   21807273       22645366     NM_020366       RPGRIP1
12  chr14   21807273       22645366     NR_002916        SNORD8
13  chr14   21807273       22645366     NR_003029        SNORD9
14  chr14   21807273       22645366     NR_111966         SALL2
16  chr16   68572050       68692052  NM_001305204         ZFP90
18  chr16   68572050       68692052  NM_001317195          CDH3
19   chr9   39026405       39148578     NM_033655       CNTNAP3
20   chr9   67194232       67317367     NR_002817        AQP7P1
21   chr9   67194232       67317367     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143661149      144176360  NM_001123068       PPIAL4G
1    chr1  143661149      144176360  NM_001278267        NBPF20
2    chr1  143661149      144176360  NM_001287385        FAM72C
3    chr1  143661149      144176360  NM_001345942        FAM72D
7    chr1  143661149      144176360     NR_104014     LINC01138
8    chr1  143661149      144176360     NR_106967       MIR6077
9    chr1  143661149      144176360     NR_111930  LOC100132057
11  chr12   57708714       58379203     NM_000075          CDK4
12  chr12   57708714       58379203     NM_000785       CYP27B1
13  chr12   57708714       58379203  NM_001080156       ARHGAP9
15  chr12   57708714       58379203  NM_001111270      ARHGEF25
16  chr12   57708714       58379203  NM_001122772         AGAP2
17  chr12   57708714       58379203  NM_001146258       PIP4K2C
18  chr12   57708714       58379203  NM_001160045          GLI1
20  chr12   57708714       58379203  NM_001172695          TSFM
22  chr12   57708714       58379203  NM_001261412         DCTN2
23  chr12   57708714       58379203  NM_001261422           OS9
24  chr12   57708714       58379203  NM_001276468      B4GALNT1
26  chr12   57708714       58379203  NM_001286245          DTX3
28  chr12   57708714       58379203  NM_001320408         ATP23
29  chr12   57708714       58379203  NM_001330122        R3HDM2
31  chr12   57708714       58379203     NM_004083         DDIT3
32  chr12   57708714       58379203     NM_004984         KIF5A
33  chr12   57708714       58379203     NM_004990          MARS
34  chr12   57708714       58379203     NM_005371        METTL1
35  chr12   57708714       58379203     NM_005538         INHBC
36  chr12   57708714       58379203     NM_005730        CTDSP2
37  chr12   57708714       58379203     NM_005981       TSPAN31
38  chr12   57708714       58379203     NM_006576          AVIL
41  chr12   57708714       58379203     NM_015433      METTL21B
42  chr12   57708714       58379203     NM_031479         INHBE
44  chr12   57708714       58379203     NM_052897          MBD6
45  chr12   57708714       58379203     NM_133489      SLC26A10
46  chr12   57708714       58379203     NM_138396        MARCH9
48  chr12   57708714       58379203     NR_027032     AGAP2-AS1
49  chr12   57708714       58379203     NR_029847       MIR26A2
50  chr12   57708714       58379203     NR_030346        MIR616
51  chr12   57708714       58379203     NR_038269  LOC100506844
52  chr12   57708714       58379203     NR_106816       MIR6758
53  chr12   57708714       58379203     NR_106817       MIR6759
54  chr12   57708714       58379203     NR_120450  LOC101927583
55  chr15   78378078       78683800  NM_001101404         SH2D7
56  chr15   78378078       78683800  NM_001130182        DNAJA4
58  chr15   78378078       78683800  NM_001199377        ACSBG1
59  chr15   78378078       78683800  NM_001301224          CIB2
60  chr15   78378078       78683800  NM_001303247         WDR61
61  chr15   78378078       78683800     NM_004378        CRABP1
62  chr15   78378078       78683800     NM_005530         IDH3A
64   chr2   62225518       62371305  NM_001321781        COMMD1
66  chr20   14668938       14994597     NM_080676       MACROD2
67  chr20   14668938       14994597     NR_037841   MACROD2-AS1
69   chr6   65501036       65694931  NM_001142800           EYS
70   chr8  100692705      100845061     NM_017890        VPS13B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21839570       23510216  NM_001001912         OR4E2
1   chr14   21839570       23510216  NM_001005465        OR10G3
2   chr14   21839570       23510216  NM_001005466        OR10G2
3   chr14   21839570       23510216  NM_001039619         PRMT5
4   chr14   21839570       23510216  NM_001126105        SLC7A7
6   chr14   21839570       23510216  NM_001130706      C14orf93
7   chr14   21839570       23510216  NM_001130725         PSMB5
9   chr14   21839570       23510216  NM_001163380         RAB2B
10  chr14   21839570       23510216  NM_001170629          CHD8
12  chr14   21839570       23510216  NM_001289097         AJUBA
13  chr14   21839570       23510216  NM_001303523          TOX4
14  chr14   21839570       23510216  NM_001317107         OR4E1
15  chr14   21839570       23510216  NM_001318870        MRPL52
16  chr14   21839570       23510216  NM_001329226         LRP10
17  chr14   21839570       23510216     NM_001344          DAD1
18  chr14   21839570       23510216     NM_004995         MMP14
19  chr14   21839570       23510216     NM_005015         OXA1L
20  chr14   21839570       23510216     NM_007192       SUPT16H
21  chr14   21839570       23510216     NM_017815         HAUS4
22  chr14   21839570       23510216     NM_018107         RBM23
23  chr14   21839570       23510216     NM_019852        METTL3
25  chr14   21839570       23510216     NM_022060         ABHD4
28  chr14   21839570       23510216     NM_173527          REM2
30  chr14   21839570       23510216     NR_002916        SNORD8
31  chr14   21839570       23510216     NR_003029        SNORD9
32  chr14   21839570       23510216     NR_039856       MIR4707
34  chr14   21839570       23510216     NR_110002  LOC101926933
35  chr14   21839570       23510216     NR_111966         SALL2
37  chr14   21839570       23510216     NR_120599     PRMT5-AS1
38   chr7    4125590        4568453  NM_001079653          SDK1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21763005       21899634  NM_001170629       CHD8
1   chr14   21763005       21899634     NM_007192    SUPT16H
2   chr14   21763005       21899634     NM_020366    RPGRIP1
4   chr14   21763005       21899634     NR_002916     SNORD8
5   chr14   21763005       21899634     NR_003029     SNORD9
6   chr18   36509680       37022420     NR_024391   MIR924HG
7    chr5   17727961       17921361     NR_134286  LOC646241
9    chr5   17715293       17899135     NR_134286  LOC646241
11   chr8    6733424        6986338  NM_001302265     DEFA1B
12   chr8    6733424        6986338     NM_001925      DEFA4
13   chr8    6733424        6986338     NM_001926      DEFA6
14   chr8    6733424        6986338     NM_004084      DEFA1
16   chr8    6733424        6986338     NM_005217      DEFA3
17   chr8    6733424        6986338     NM_005218      DEFB1
18   chr8    6733424        6986338     NM_021010      DEFA5
19   chr8    6733424        6986338     NR_029386    DEFA10P
20   chr8    6733424        6986338     NR_036686     DEFT1P
22   chr8    6733424        6986338     NR_073407     DEFA8P
23   chr8    6733424        6986338     NR_073408     DEFA9P
24   chr8    6733424        6986338     NR_073421    DEFA11P
25   chr8  100699907      100908992     NM_004374      COX6C
26   chr8  100699907      100908992     NM_017890     VPS13B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12772524       12992469  NM_001009611       PRAMEF4
1    chr1   12772524       12992469  NM_001012276       PRAMEF8
2    chr1   12772524       12992469  NM_001013631      HNRNPCL1
3    chr1   12772524       12992469  NM_001080830      PRAMEF12
4    chr1   12772524       12992469  NM_001103170       AADACL3
5    chr1   12772524       12992469  NM_001146181      HNRNPCL3
6    chr1   12772524       12992469  NM_001146344      PRAMEF11
7    chr1   12772524       12992469  NM_001294139       PRAMEF1
8    chr1   12772524       12992469  NM_001302551      HNRNPCL4
10   chr1   12772524       12992469     NM_023014       PRAMEF2
11   chr1   12772524       12992469     NM_152290      C1orf158
12  chr13   22427182       22528264     NR_047040     LINC00424
13  chr16   18241844       18481307  NM_001282511        NPIPA8
14  chr16   18241844       18481307     NR_103772  LOC100288162
15  chr16   18241844       18481307     NR_106971     MIR6511A4
16  chr16   18241844       18481307     NR_107060     MIR6770-2
17   chr6  155461936      155786486  NM_001001346        CLDN20
18   chr6  155461936      155786486  NM_001010927         TIAM2
20   chr6  155461936      155786486     NM_015718          NOX3
21   chr6  155461936      155786486     NM_016020         TFB1M,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   12765876       13211563  NM_001009611       PRAMEF4
1   chr1   12765876       13211563  NM_001010889       PRAMEF6
2   chr1   12765876       13211563  NM_001010890       PRAMEF9
3   chr1   12765876       13211563  NM_001012276       PRAMEF8
4   chr1   12765876       13211563  NM_001013407       PRAMEF5
5   chr1   12765876       13211563  NM_001013631      HNRNPCL1
6   chr1   12765876       13211563  NM_001080830      PRAMEF12
7   chr1   12765876       13211563  NM_001099850      PRAMEF18
8   chr1   12765876       13211563  NM_001100631      PRAMEF22
9   chr1   12765876       13211563  NM_001103170       AADACL3
10  chr1   12765876       13211563  NM_001136561      HNRNPCL2
11  chr1   12765876       13211563  NM_001146181      HNRNPCL3
12  chr1   12765876       13211563  NM_001146344      PRAMEF11
13  chr1   12765876       13211563  NM_001294139       PRAMEF1
14  chr1   12765876       13211563  NM_001302551      HNRNPCL4
15  chr1   12765876       13211563  NM_001306072      PRAMEF26
16  chr1   12765876       13211563  NM_001310134      PRAMEF25
18  chr1   12765876       13211563     NM_023014       PRAMEF2
19  chr1   12765876       13211563     NM_152290      C1orf158
20  chr1   12765876       13211563     NR_111945     PRAMEF36P
22  chr1  143551223      144330249  NM_001123068       PPIAL4G
23  chr1  143551223      144330249  NM_001278267        NBPF20
24  chr1  143551223      144330249  NM_001287385        FAM72C
25  chr1  143551223      144330249  NM_001345942        FAM72D
29  chr1  143551223      144330249     NR_024511     LINC00623
31  chr1  143551223      144330249     NR_104014     LINC01138
32  chr1  143551223      144330249     NR_106967       MIR6077
33  chr1  143551223      144330249     NR_111930  LOC100132057
34  chr1  143551223      144330249     NR_111953     LINC00869
36  chr3   17378409       17534348  NM_001134381        TBC1D5
38  chr7   71451359       72318244  NM_001017440         CALN1
39  chr7   71451359       72318244  NM_001145440         TYW1B
41  chr7   71451359       72318244     NR_001588        SBDSP1
43  chr7   71451359       72318244     NR_039793     MIR4650-1
44  chr9  103344977      103526418  NM_001018116          MURC,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  176958848      177113461  NM_001286164      ASTN1
3    chr1  176958848      177113461     NR_030163     MIR488
4   chr14   21919114       22025871  NM_001163380      RAB2B
5   chr14   21919114       22025871  NM_001303523       TOX4
6   chr14   21919114       22025871     NM_019852     METTL3
8   chr14   21919114       22025871     NR_111966      SALL2
10   chr2  186929323      187031922     NR_110218  LINC01473,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21845339       22052805  NM_001005465    OR10G3
1   chr14   21845339       22052805  NM_001163380     RAB2B
2   chr14   21845339       22052805  NM_001170629      CHD8
3   chr14   21845339       22052805  NM_001303523      TOX4
4   chr14   21845339       22052805     NM_007192   SUPT16H
5   chr14   21845339       22052805     NM_019852    METTL3
8   chr14   21845339       22052805     NR_002916    SNORD8
9   chr14   21845339       22052805     NR_003029    SNORD9
10  chr14   21845339       22052805     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21823916       22287085  NM_001001912     OR4E2
1   chr14   21823916       22287085  NM_001005465    OR10G3
2   chr14   21823916       22287085  NM_001005466    OR10G2
3   chr14   21823916       22287085  NM_001163380     RAB2B
4   chr14   21823916       22287085  NM_001170629      CHD8
5   chr14   21823916       22287085  NM_001303523      TOX4
6   chr14   21823916       22287085  NM_001317107     OR4E1
7   chr14   21823916       22287085     NM_007192   SUPT16H
8   chr14   21823916       22287085     NM_019852    METTL3
11  chr14   21823916       22287085     NR_002916    SNORD8
12  chr14   21823916       22287085     NR_003029    SNORD9
13  chr14   21823916       22287085     NR_111966     SALL2
15   chr3    1167322        1271605  NM_001289081     CNTN6,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11    4842862        4948255  NM_001004749       OR51A7
1   chr11    4842862        4948255  NM_001004753       OR51F2
2   chr11    4842862        4948255  NM_001004758       OR51S1
3   chr11    4842862        4948255  NM_001004759       OR51T1
4   chr11    4842862        4948255  NM_001005237       OR51G1
5   chr11    4842862        4948255  NM_001005238       OR51G2
6   chr16   18534417       18759320  NM_001004060        NOMO2
7   chr16   18534417       18759320     NR_003569      ABCC6P1
8   chr16   28455995       28684101     NM_000086         CLN3
10  chr16   28455995       28684101  NM_001042483        NUPR1
11  chr16   28455995       28684101     NM_001054      SULT1A2
15  chr16   28455995       28684101  NM_001310136       NPIPB8
16  chr16   28455995       28684101     NM_018690        APOBR
17  chr16   28455995       28684101     NM_138414        SGF29
18  chr16   28455995       28684101     NM_145659         IL27
20  chr16   28455995       28684101     NM_177529      SULT1A1
23  chr20   14741193       14925543     NM_080676      MACROD2
24  chr20   14741193       14925543     NR_037841  MACROD2-AS1
26   chr5   17573720       17820253     NR_134286    LOC646241
28   chr7    5640195        5971529  NM_001097622          OCM
29   chr7    5640195        5971529  NM_001099697     RSPH10B2
30   chr7    5640195        5971529     NM_003088        FSCN1
31   chr7    5640195        5971529     NM_015622         CCZ1
32   chr7    5640195        5971529     NM_207116       RNF216
33   chr7    5640195        5971529     NR_023382      ZNF815P
34   chr7    5640195        5971529     NR_046834   RNF216-IT1
35   chr7    5640195        5971529     NR_106934      MIR6874,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143704415      144679781  NM_001123068       PPIAL4G
1    chr1  143704415      144679781  NM_001135789       PPIAL4C
2    chr1  143704415      144679781  NM_001277444         NBPF9
3    chr1  143704415      144679781  NM_001278267        NBPF20
4    chr1  143704415      144679781  NM_001287385        FAM72C
5    chr1  143704415      144679781  NM_001345942        FAM72D
9    chr1  143704415      144679781     NR_003242        PFN1P2
10   chr1  143704415      144679781     NR_024511     LINC00623
12   chr1  143704415      144679781     NR_102405         NBPF8
13   chr1  143704415      144679781     NR_104014     LINC01138
14   chr1  143704415      144679781     NR_111930  LOC100132057
15   chr1  143704415      144679781     NR_111953     LINC00869
17  chr15   28640527       28798481     NR_033351       GOLGA8F
18  chr15   28640527       28798481     NR_033353       GOLGA8G
19  chr15   28640527       28798481     NR_039734     MIR4509-3,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0    chr1   97428090       97562617     NM_000110            DPYD
1    chr1   97428090       97562617     NR_046590        DPYD-AS1
2    chr1  143680583      143912212  NM_001123068         PPIAL4G
3    chr1  143680583      143912212  NM_001287385          FAM72C
4    chr1  143680583      143912212  NM_001345942          FAM72D
8    chr1  143680583      143912212     NR_104014       LINC01138
9    chr1  143680583      143912212     NR_111930    LOC100132057
11  chr15   43973620       44212306  NM_001018108           SERF2
12  chr15   43973620       44212306  NM_001167941           WDR76
16  chr15   43973620       44212306  NM_001199885            HYPK
17  chr15   43973620       44212306  NM_001258031         SERINC4
18  chr15   43973620       44212306  NM_001286490           FRMD5
20  chr15   43973620       44212306  NM_001321927          CKMT1A
23  chr15   43973620       44212306     NM_005313           PDIA3
24  chr15   43973620       44212306     NM_005926           MFAP1
25  chr15   43973620       44212306     NM_025165            ELL3
26  chr15   43973620       44212306     NR_002318      CATSPER2P1
27  chr15   43973620       44212306     NR_003571          PIN4P1
28  chr15   43973620       44212306     NR_031695         MIR1282
29  chr15   43973620       44212306     NR_037673  SERF2-C15ORF63
31   chr9  103344282      104057587  NM_001018116            MURC
32   chr9  103344282      104057587     NM_017753          PLPPR1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   82243785       82459781  NM_001297704        ADGRL2
2  chr15   28770652       29041648  NM_001282468       GOLGA8M
3  chr15   28770652       29041648     NR_026589       WHAMMP2
4  chr15   28770652       29041648     NR_033351       GOLGA8F
5  chr15   28770652       29041648     NR_033353       GOLGA8G
6  chr15   28770652       29041648     NR_036443       HERC2P9
7  chr15   28770652       29041648     NR_036475  LOC100289656
8  chr15   28770652       29041648     NR_037599     PDCD6IPP2
9  chr16   71088076       71280608  NM_001198542         HYDIN,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1   49636445       49984308  NM_001323575          AGBL4
1    chr1   49636445       49984308     NR_046839      AGBL4-IT1
2    chr1   49636445       49984308     NR_125988   LOC101929721
3   chr14   21824281       22424484  NM_001001912          OR4E2
4   chr14   21824281       22424484  NM_001005465         OR10G3
5   chr14   21824281       22424484  NM_001005466         OR10G2
6   chr14   21824281       22424484  NM_001163380          RAB2B
7   chr14   21824281       22424484  NM_001170629           CHD8
8   chr14   21824281       22424484  NM_001303523           TOX4
9   chr14   21824281       22424484  NM_001317107          OR4E1
10  chr14   21824281       22424484     NM_007192        SUPT16H
11  chr14   21824281       22424484     NM_019852         METTL3
14  chr14   21824281       22424484     NR_002916         SNORD8
15  chr14   21824281       22424484     NR_003029         SNORD9
16  chr14   21824281       22424484     NR_111966          SALL2
18  chr19    9423666        9549402  NM_001172650  ZNF559-ZNF177
19  chr19    9423666        9549402  NM_001172651         ZNF177
20  chr19    9423666        9549402  NM_001202406         ZNF559
23  chr19    9423666        9549402  NM_001271314         ZNF266,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  144740282      145149147  NM_001002810   PDE4DIP
7    chr1  144740282      145149147  NM_001277444     NBPF9
8    chr1  144740282      145149147  NM_001278267    NBPF20
9    chr1  144740282      145149147     NM_004892    SEC22B
11   chr1  144740282      145149147     NR_102405     NBPF8
12  chr14   21821723       21946109  NM_001163380     RAB2B
13  chr14   21821723       21946109  NM_001170629      CHD8
14  chr14   21821723       21946109  NM_001303523      TOX4
15  chr14   21821723       21946109     NM_007192   SUPT16H
18  chr14   21821723       21946109     NR_002916    SNORD8
19  chr14   21821723       21946109     NR_003029    SNORD9
20   chr7  110623449      110780460  NM_001099658     LRRN3
21   chr7  110623449      110780460  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21832888       22129619  NM_001005465    OR10G3
1   chr14   21832888       22129619  NM_001005466    OR10G2
2   chr14   21832888       22129619  NM_001163380     RAB2B
3   chr14   21832888       22129619  NM_001170629      CHD8
4   chr14   21832888       22129619  NM_001303523      TOX4
5   chr14   21832888       22129619     NM_007192   SUPT16H
6   chr14   21832888       22129619     NM_019852    METTL3
9   chr14   21832888       22129619     NR_002916    SNORD8
10  chr14   21832888       22129619     NR_003029    SNORD9
11  chr14   21832888       22129619     NR_111966     SALL2
13   chr2    1071333        1219713     NM_018968     SNTG2
14   chr4   66746108       67264327     NR_031673  MIR1269A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28228557       28519627     NM_000275          OCA2
2   chr15   28228557       28519627     NM_004667         HERC2
3   chr16   68604708       68729766  NM_001305204         ZFP90
4   chr16   68604708       68729766  NM_001317195          CDH3
5   chr17   29306167       29860063     NM_000267           NF1
6   chr17   29306167       29860063  NM_001003927         EVI2A
8   chr17   29306167       29860063  NM_001184992        RNF135
9   chr17   29306167       29860063  NM_001303542     RAB11FIP4
10  chr17   29306167       29860063     NM_002544           OMG
11  chr17   29306167       29860063     NM_006495         EVI2B
14  chr17   29306167       29860063     NR_039886       MIR4733
15  chr17   70930618       71071571     NM_139177      SLC39A11
16  chr22   19873347       20340982     NM_000754          COMT
19  chr22   19873347       20340982  NM_001190326         DGCR8
20  chr22   19873347       20340982  NM_001243537       CCDC188
21  chr22   19873347       20340982  NM_001278639        RANBP1
24  chr22   19873347       20340982  NM_001282512        TXNRD2
25  chr22   19873347       20340982  NM_001283116        TANGO2
28  chr22   19873347       20340982     NM_001670         ARVCF
31  chr22   19873347       20340982     NM_013373        ZDHHC8
32  chr22   19873347       20340982     NM_022727        TRMT2A
33  chr22   19873347       20340982     NM_023004         RTN4R
34  chr22   19873347       20340982     NM_033257        DGCR6L
35  chr22   19873347       20340982     NR_026919     LINC00896
36  chr22   19873347       20340982     NR_029706        MIR185
37  chr22   19873347       20340982     NR_031618       MIR1286
38  chr22   19873347       20340982     NR_031706       MIR1306
39  chr22   19873347       20340982     NR_037412       MIR3618
40  chr22   19873347       20340982     NR_038460     LOC284865
41  chr22   19873347       20340982     NR_039918       MIR4761
42  chr22   19873347       20340982     NR_106874       MIR6816
43  chr22   19873347       20340982     NR_136560       FAM230A
44  chr22   19873347       20340982     NR_136572  LOC101927859
45   chr5   99679830       99841712     NR_027503  LOC100133050
46   chr7   75729166       75860136  NM_001110199         SRRM3
47   chr7   75729166       75860136     NR_135079       GTF2IP7,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21946561       22047933  NM_001005465    OR10G3
1  chr14   21946561       22047933  NM_001303523      TOX4
2  chr14   21946561       22047933     NM_019852    METTL3
3  chr14   21946561       22047933     NR_111966     SALL2
5  chr18   25029772       26489223  NM_001308176      CDH2
7   chr3     323336         502833  NM_001253387      CHL1
9   chr3     323336         502833     NR_110739  CHL1-AS1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21861211       21969867  NM_001163380     RAB2B
1  chr14   21861211       21969867  NM_001170629      CHD8
2  chr14   21861211       21969867  NM_001303523      TOX4
3  chr14   21861211       21969867     NM_019852    METTL3
6  chr14   21861211       21969867     NR_002916    SNORD8
7   chr2  117983048      118629958     NM_006773     DDX18
8   chr4   94029643       94686256     NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21659342       22193903  NM_001001912         OR4E2
1   chr14   21659342       22193903  NM_001005465        OR10G3
2   chr14   21659342       22193903  NM_001005466        OR10G2
3   chr14   21659342       22193903  NM_001163380         RAB2B
4   chr14   21659342       22193903  NM_001170629          CHD8
5   chr14   21659342       22193903  NM_001303523          TOX4
6   chr14   21659342       22193903  NM_001317107         OR4E1
7   chr14   21659342       22193903     NM_007192       SUPT16H
8   chr14   21659342       22193903     NM_019852        METTL3
9   chr14   21659342       22193903     NM_020366       RPGRIP1
11  chr14   21659342       22193903     NM_031314        HNRNPC
13  chr14   21659342       22193903     NR_002916        SNORD8
14  chr14   21659342       22193903     NR_003029        SNORD9
15  chr14   21659342       22193903     NR_038970     LINC00641
17  chr14   21659342       22193903     NR_111966         SALL2
19   chr3    3850019        4332189  NM_001324189         LRRN1
20   chr5    5929156        6444367     NM_032286         MED10
21   chr5    5929156        6444367     NR_028351      FLJ33360
22   chr9   67107502       67540364     NR_002817        AQP7P1
23   chr9   67107502       67540364     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   55774857       56017646  NM_001142770        PCDH15
3   chr15   28559754       29184501  NM_001282468       GOLGA8M
4   chr15   28559754       29184501     NM_004667         HERC2
5   chr15   28559754       29184501     NR_026589       WHAMMP2
6   chr15   28559754       29184501     NR_033351       GOLGA8F
8   chr15   28559754       29184501     NR_033353       GOLGA8G
10  chr15   28559754       29184501     NR_036443       HERC2P9
11  chr15   28559754       29184501     NR_036475  LOC100289656
12  chr15   28559754       29184501     NR_037599     PDCD6IPP2
13  chr15   28559754       29184501     NR_039734     MIR4509-3
15  chr15   28559754       29184501     NR_047567     GOLGA6L7P
16   chr4   66426572       66720473  NM_001281766         EPHA5
19   chr4   66426572       66720473     NR_034138     EPHA5-AS1
20   chr5      80078         248367  NM_001080478       LRRC14B
21   chr5      80078         248367     NM_004168          SDHA
22   chr5      80078         248367     NM_052909      PLEKHG4B
23   chr5      80078         248367     NM_145265       CCDC127
24   chr9   17140898       17428853  NM_001114395         CNTLN
27   chr9   41871864       42084975     NR_003670        FGF7P3
28   chr9   41871864       42084975     NR_015363         GLIDR
31   chr9   41871864       42084975     NR_126048  LOC102724238
32   chr9   41871864       42084975     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21914165       22026182  NM_001163380      RAB2B
1   chr14   21914165       22026182  NM_001303523       TOX4
2   chr14   21914165       22026182     NM_019852     METTL3
4   chr14   21914165       22026182     NR_111966      SALL2
6   chr15   28310846       28415161     NM_000275       OCA2
8   chr15   28310846       28415161     NM_004667      HERC2
9   chr17    3812202        3939428     NM_002558      P2RX1
10  chr17    3812202        3939428     NM_015113      ZZEF1
11  chr17    3812202        3939428     NM_174955     ATP2A3
12   chr7  111236679      111689390     NM_014705      DOCK4
13   chr7  111236679      111689390     NR_103806  DOCK4-AS1
14   chr9   30389497       30928391     NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245034302      245277306  NM_001143943        EFCAB2
3    chr1  245034302      245277306     NR_111907  LOC101928068
4   chr15   20702025       20812358  NM_001145004      GOLGA6L6
5   chr15   20702025       20812358     NR_027411      GOLGA8CP
6   chr15   20702025       20812358     NR_036432       HERC2P3
7   chr16   14809642       15052192  NM_001277323        NPIPA3
9   chr16   14809642       15052192  NM_001277324        NPIPA2
11  chr16   14809642       15052192     NM_006985        NPIPA1
12  chr16   14809642       15052192     NM_014287         NOMO1
13  chr16   14809642       15052192     NR_023387       ABCC6P2
14  chr16   14809642       15052192     NR_036140     MIR3179-1
15  chr16   14809642       15052192     NR_036141     MIR3180-1
16  chr16   14809642       15052192     NR_036142     MIR3180-2
17  chr16   14809642       15052192     NR_103772  LOC100288162
18  chr16   14809642       15052192     NR_106970     MIR6511A3
19  chr16   14809642       15052192     NR_107060     MIR6770-2
20  chr16   14809642       15052192     NR_128713     MIR3670-4
21  chr16   18294620       18514924  NM_001004060         NOMO2
22  chr16   18294620       18514924  NM_001282511        NPIPA8
23  chr16   18294620       18514924     NR_036140     MIR3179-1
24  chr16   18294620       18514924     NR_036142     MIR3180-2
25  chr16   18294620       18514924     NR_036144     MIR3180-3
26  chr16   18294620       18514924     NR_037442     MIR3670-1
27  chr16   18294620       18514924     NR_103772  LOC100288162
28  chr16   18294620       18514924     NR_106971     MIR6511A4
29  chr16   18294620       18514924     NR_107060     MIR6770-2
30   chr4   98864076       99077187     NM_174952         STPG2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21922619       22095540  NM_001005465    OR10G3
1   chr14   21922619       22095540  NM_001163380     RAB2B
2   chr14   21922619       22095540  NM_001303523      TOX4
3   chr14   21922619       22095540     NM_019852    METTL3
5   chr14   21922619       22095540     NR_111966     SALL2
7   chr18     772600         876036     NM_005433      YES1
8    chr2  234315685      234575216     NM_003648      DGKD
9    chr2  234315685      234575216     NM_018218     USP40
10   chr2  234315685      234575216     NM_019075   UGT1A10
11   chr2  234315685      234575216     NM_019076    UGT1A8
13   chr4   93223280       93385269     NM_001510     GRID2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2  186506083      186698570     NM_173651         FSIP2
1  chr2  186506083      186698570     NR_110214  LOC101927196
4  chr2  186506083      186698570     NR_144453     FSIP2-AS1
6  chr3  116114199      116324039  NM_001318915         LSAMP,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72552464       72953963     NM_013381         TRHDE
1   chr12   72552464       72953963     NR_026836     TRHDE-AS1
3   chr14   21774298       21887878  NM_001170629          CHD8
4   chr14   21774298       21887878     NM_007192       SUPT16H
5   chr14   21774298       21887878     NM_020366       RPGRIP1
7   chr14   21774298       21887878     NR_002916        SNORD8
8   chr14   21774298       21887878     NR_003029        SNORD9
9   chr16   21387778       22217993  NM_001077180        METTL9
10  chr16   21387778       22217993  NM_001161683          OTOA
11  chr16   21387778       22217993  NM_001164579      C16orf52
13  chr16   21387778       22217993  NM_001310148        NPIPB4
14  chr16   21387778       22217993     NM_003366        UQCRC2
15  chr16   21387778       22217993     NM_005849         IGSF6
16  chr16   21387778       22217993     NM_013302         EEF2K
17  chr16   21387778       22217993     NM_130464        NPIPB3
20  chr16   21387778       22217993     NM_173615         VWA3A
21  chr16   21387778       22217993     NM_173806         PDZD9
22  chr16   21387778       22217993     NR_002594      SLC7A5P2
23  chr16   21387778       22217993     NR_003370        RRN3P1
24  chr16   21387778       22217993     NR_024456  LOC100190986
25  chr16   21387778       22217993     NR_027155        SMG1P3
26  chr16   21387778       22217993     NR_045011       SNX29P1
27  chr16   21387778       22217993     NR_049833     MIR3680-2
28  chr16   21387778       22217993     NR_110930  LOC101927814
29   chr2   51695417       51820432     NR_135237     LOC730100
30   chr3    4150001        4441148  NM_001164675         SUMF1
31   chr3    4150001        4441148  NM_001243723        SETMAR
33   chr4   69259278       69657497     NM_001076       UGT2B15
34   chr4   69259278       69657497     NM_001077       UGT2B17
35   chr4   69259278       69657497     NM_014058     TMPRSS11E
36   chr5   23980735       24381869     NR_131245       C5orf17
37   chr7  143083497      143654791  NM_001004685         OR2F2
38   chr7  143083497      143654791  NM_001008747       CTAGE15
39   chr7  143083497      143654791  NM_001130025         TCAF2
41   chr7  143083497      143654791  NM_001206938         TCAF1
43   chr7  143083497      143654791     NM_003461           ZYX
44   chr7  143083497      143654791     NM_005232         EPHA1
47   chr7  143083497      143654791     NM_176883       TAS2R41
48   chr7  143083497      143654791     NM_177437       TAS2R60
49   chr7  143083497      143654791     NM_178561        CTAGE6
50   chr7  143083497      143654791     NR_015421     LOC154761
51   chr7  143083497      143654791     NR_033897     EPHA1-AS1
52   chr7  143083497      143654791     NR_110549       TCAF2P1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67969611       68102861  NM_001127384    CTNNA3
2   chr14   21724641       21838743     NM_007192   SUPT16H
3   chr14   21724641       21838743     NM_020366   RPGRIP1
4   chr14   21724641       21838743     NM_031314    HNRNPC
5   chr14   21867750       22003059  NM_001163380     RAB2B
6   chr14   21867750       22003059  NM_001170629      CHD8
7   chr14   21867750       22003059  NM_001303523      TOX4
8   chr14   21867750       22003059     NM_019852    METTL3
11  chr14   21867750       22003059     NR_111966     SALL2
13   chr4  128481228      128594403     NM_015693      INTU,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  243480815      243899934  NM_001206729          AKT3
2    chr1  243480815      243899934     NM_006642       SDCCAG8
4    chr1  243480815      243899934     NR_039824       MIR4677
5   chr18   35071024       35301916     NM_020180         CELF4
6   chr18   35071024       35301916     NR_036202       MIR4318
7   chr22   17231504       17662459  NM_001037814          GAB4
8   chr22   17231504       17662459  NM_001163079         CECR6
9   chr22   17231504       17662459  NM_001282227         CECR1
11  chr22   17231504       17662459  NM_001289905        IL17RA
12  chr22   17231504       17662459     NM_017829         CECR5
15  chr22   17231504       17662459     NM_175878          XKR3
17  chr22   17231504       17662459     NR_003607       HSFY1P1
18  chr22   17231504       17662459     NR_015352         CECR7
19  chr22   17231504       17662459     NR_024482     CECR5-AS1
20  chr22   17231504       17662459     NR_103793  LOC100996342
21   chr4   69319128       69743047     NM_001075       UGT2B10
22   chr4   69319128       69743047     NM_001076       UGT2B15
23   chr4   69319128       69743047     NM_001077       UGT2B17
24   chr4   69319128       69743047     NM_014058     TMPRSS11E
25   chr4  136801802      136915101     NR_103762     LINC00613,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21897840       22023385  NM_001163380      RAB2B
1   chr14   21897840       22023385  NM_001170629       CHD8
2   chr14   21897840       22023385  NM_001303523       TOX4
3   chr14   21897840       22023385     NM_019852     METTL3
6   chr14   21897840       22023385     NR_111966      SALL2
8   chr16   79819185       80005300     NR_104660  LINC01229
10  chr21   22351497       22456291     NM_004540      NCAM2
11   chr3    2341366        2510380  NM_001206955      CNTN4
13   chr6  162674786      162799615     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143671566      144646932  NM_001123068       PPIAL4G
1    chr1  143671566      144646932  NM_001135789       PPIAL4C
2    chr1  143671566      144646932  NM_001277444         NBPF9
3    chr1  143671566      144646932  NM_001278267        NBPF20
4    chr1  143671566      144646932  NM_001287385        FAM72C
5    chr1  143671566      144646932  NM_001345942        FAM72D
9    chr1  143671566      144646932     NR_003242        PFN1P2
10   chr1  143671566      144646932     NR_024511     LINC00623
12   chr1  143671566      144646932     NR_102405         NBPF8
13   chr1  143671566      144646932     NR_104014     LINC01138
14   chr1  143671566      144646932     NR_106967       MIR6077
15   chr1  143671566      144646932     NR_111930  LOC100132057
16   chr1  143671566      144646932     NR_111953     LINC00869
18  chr13   67201314       67448802     NM_020403         PCDH9
19  chr13   67201314       67448802     NR_046527     PCDH9-AS2
20  chr16   15463676       15724835  NM_001128423        MPV17L
21  chr16   15463676       15724835  NM_001142469      C16orf45
22  chr16   15463676       15724835  NM_001184998      KIAA0430
23  chr16   15463676       15724835  NM_001277325        NPIPA5
25  chr16   15463676       15724835     NR_106761       MIR6506
26   chr4  133464254      133604319     NR_126401     LINC01256
27   chr5   59612305       59756189  NM_001165899         PDE4D
28   chr8    7075141        7273148  NM_001164457       ZNF705G
29   chr8    7075141        7273148  NM_001205266        DEFB4B
30   chr8    7075141        7273148  NM_001256873       USP17L1
31   chr8    7075141        7273148  NM_001256874       USP17L4
32   chr8    7075141        7273148     NR_003668    DEFB109P1B
33   chr8    7075141        7273148     NR_027000     LINC00965
36   chr8    7075141        7273148     NR_027423        FAM66B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21651633       21793677     NM_020366    RPGRIP1
1   chr14   21651633       21793677     NM_031314     HNRNPC
2   chr14   21651633       21793677     NR_038970  LINC00641
4    chr3   60060989       60179437  NM_001320899       FHIT
6    chr4    8977633        9341262  NM_001242326   USP17L25
10   chr4    8977633        9341262  NM_001256852   USP17L10
11   chr4    8977633        9341262  NM_001256853   USP17L12
13   chr4    8977633        9341262  NM_001256854   USP17L11
16   chr4    8977633        9341262  NM_001256855   USP17L13
17   chr4    8977633        9341262  NM_001256857   USP17L17
18   chr4    8977633        9341262  NM_001256860   USP17L19
19   chr4    8977633        9341262  NM_001256861   USP17L20
20   chr4    8977633        9341262  NM_001256894   USP17L15,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12808062       15357982  NM_001006624          PDPN
1    chr1   12808062       15357982  NM_001007257         PRDM2
2    chr1   12808062       15357982  NM_001009611       PRAMEF4
3    chr1   12808062       15357982  NM_001010847        LRRC38
4    chr1   12808062       15357982  NM_001010889       PRAMEF6
6    chr1   12808062       15357982  NM_001010890       PRAMEF9
7    chr1   12808062       15357982  NM_001012276       PRAMEF8
10   chr1   12808062       15357982  NM_001013407       PRAMEF5
12   chr1   12808062       15357982  NM_001013631      HNRNPCL1
13   chr1   12808062       15357982  NM_001017999          KAZN
16   chr1   12808062       15357982  NM_001024661      PRAMEF14
18   chr1   12808062       15357982  NM_001039361      PRAMEF10
20   chr1   12808062       15357982  NM_001080830      PRAMEF12
21   chr1   12808062       15357982  NM_001098376      PRAMEF15
23   chr1   12808062       15357982  NM_001099790      PRAMEF19
25   chr1   12808062       15357982  NM_001099850      PRAMEF18
27   chr1   12808062       15357982  NM_001099851      PRAMEF17
29   chr1   12808062       15357982  NM_001099852      PRAMEF20
31   chr1   12808062       15357982  NM_001100631      PRAMEF22
34   chr1   12808062       15357982  NM_001136561      HNRNPCL2
35   chr1   12808062       15357982  NM_001146181      HNRNPCL3
36   chr1   12808062       15357982  NM_001146344      PRAMEF11
37   chr1   12808062       15357982  NM_001291381     PRAMEF33P
39   chr1   12808062       15357982  NM_001294139       PRAMEF1
40   chr1   12808062       15357982  NM_001300891      PRAMEF27
43   chr1   12808062       15357982  NM_001302551      HNRNPCL4
44   chr1   12808062       15357982  NM_001306072      PRAMEF26
45   chr1   12808062       15357982  NM_001310134      PRAMEF25
50   chr1   12808062       15357982     NM_023014       PRAMEF2
51   chr1   12808062       15357982     NM_152290      C1orf158
54   chr1   12808062       15357982     NR_111945     PRAMEF36P
56  chr11    4815911        4918244  NM_001004753        OR51F2
57  chr11    4815911        4918244  NM_001004758        OR51S1
58  chr11    4815911        4918244  NM_001004759        OR51T1
59  chr11    4815911        4918244  NM_001005177        OR52R1
60  chr16   29524259       29740392  NM_001030288           SPN
61  chr16   29524259       29740392  NM_001318249          QPRT
63  chr16   29524259       29740392     NR_049833     MIR3680-2
64  chr16   29524259       29740392     NR_135305        SMG1P2
66   chr2  186283182      186769591     NM_173651         FSIP2
67   chr2  186283182      186769591     NR_110214  LOC101927196
70   chr2  186283182      186769591     NR_144453     FSIP2-AS1
72   chr2  235230724      235408617  NM_001282431         ARL4C,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr10   68056010       68223119  NM_001127384             CTNNA3
2   chr14   78401403       78695408     NR_073547              NRXN3
3    chr2  186233295      187201743     NM_173651              FSIP2
4    chr2  186233295      187201743     NR_110214       LOC101927196
7    chr2  186233295      187201743     NR_110218          LINC01473
8    chr2  186233295      187201743     NR_144453          FSIP2-AS1
10  chr22   17126074       17758548  NM_001037814               GAB4
11  chr22   17126074       17758548  NM_001163079              CECR6
12  chr22   17126074       17758548  NM_001282227              CECR1
14  chr22   17126074       17758548  NM_001289905             IL17RA
15  chr22   17126074       17758548     NM_017829              CECR5
18  chr22   17126074       17758548     NM_175878               XKR3
20  chr22   17126074       17758548     NR_001591             TPTEP1
21  chr22   17126074       17758548     NR_003607            HSFY1P1
22  chr22   17126074       17758548     NR_015352              CECR7
23  chr22   17126074       17758548     NR_024482          CECR5-AS1
24  chr22   17126074       17758548     NR_038398              CECR3
25  chr22   17126074       17758548     NR_040115  ANKRD62P1-PARP4P3
26  chr22   17126074       17758548     NR_103793       LOC100996342
27  chr22   17126074       17758548     NR_134584       LOC101929350
28   chr6  162233884      162347772     NM_013988              PARK2
29   chr7  110561303      110720912  NM_001244606             IMMP2L
31   chr7  110980364      111577771  NM_001244606             IMMP2L
32   chr7  110980364      111577771     NM_014705              DOCK4
34   chr7  110980364      111577771     NR_103806          DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   29480907       29741127  NM_001030288           SPN
1   chr16   29480907       29741127  NM_001318249          QPRT
3   chr16   29480907       29741127     NR_049833     MIR3680-2
4   chr16   29480907       29741127     NR_135305        SMG1P2
6    chr2   97284180       97405125  NM_001115016        KANSL3
7    chr2   97284180       97405125  NM_001293083        FER1L5
8    chr2   97284180       97405125  NM_001322354        LMAN2L
11  chr22   17263493       17388832     NM_175878          XKR3
12  chr22   17263493       17388832     NR_003607       HSFY1P1
13   chr3  155962979      156460539  NM_001184717        TIPARP
15   chr3  155962979      156460539  NM_001308197          SSR3
18   chr3  155962979      156460539  NM_001308217        KCNAB1
24   chr3  155962979      156460539     NR_027954    TIPARP-AS1
25   chr3  155962979      156460539     NR_046618    KCNAB1-AS1
26   chr7   64035713       64247125  NM_001282360        ZNF107
27   chr7   64035713       64247125     NR_033245     LOC641746
28   chr7   64035713       64247125     NR_077227  LOC100128885
30   chr7   64035713       64247125     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   67903143       68072600  NM_001127384       CTNNA3
2   chr13   31456805       31671927     NM_032849        MEDAG
3   chr13   31456805       31671927     NM_152325        TEX26
4   chr13   31456805       31671927     NR_038287    TEX26-AS1
6   chr13   31456805       31671927     NR_103813    LINC00545
7   chr14   21605153       21876284  NM_001004731       OR5AU1
8   chr14   21605153       21876284  NM_001170629         CHD8
9   chr14   21605153       21876284     NM_007192      SUPT16H
10  chr14   21605153       21876284     NM_020366      RPGRIP1
12  chr14   21605153       21876284     NM_031314       HNRNPC
13  chr14   21605153       21876284     NR_002916       SNORD8
14  chr14   21605153       21876284     NR_003029       SNORD9
15  chr14   21605153       21876284     NR_038970    LINC00641
17  chr16   71087279       71530142  NM_001099642        CMTR2
18  chr16   71087279       71530142  NM_001198542        HYDIN
20  chr16   71087279       71530142  NM_001304492        ZNF23
25  chr16   71087279       71530142     NM_001740        CALB2
26  chr16   71087279       71530142     NM_006961        ZNF19
30   chr3    3992640        4350394  NM_001243723       SETMAR
32   chr4   68946885       69725933  NM_001031732       YTHDC1
33   chr4   68946885       69725933     NM_001075      UGT2B10
34   chr4   68946885       69725933     NM_001076      UGT2B15
35   chr4   68946885       69725933     NM_001077      UGT2B17
36   chr4   68946885       69725933     NM_014058    TMPRSS11E
37   chr4   68946885       69725933     NM_182502    TMPRSS11B
38   chr4   68946885       69725933     NM_207407    TMPRSS11F
39   chr4   68946885       69725933     NR_015446       FTLP10
40   chr4   68946885       69725933     NR_104048  TMPRSS11BNL
41   chr7   64079519       64204340  NM_001282360       ZNF107
43   chr7   64079519       64204340     NR_106898      MIR6839
44   chr8     439233         619791  NM_001256113         TDRP
45   chr8     439233         619791  NM_001303100       ERICH1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143712255      143823625  NM_001123068       PPIAL4G
1   chr1  143712255      143823625     NR_104014     LINC01138
2   chr1  143712255      143823625     NR_111930  LOC100132057
3  chr22   17196387       17297116     NM_175878          XKR3
4  chr22   17196387       17297116     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28701759       29885066  NM_001130414         APBA2
1   chr15   28701759       29885066  NM_001282468       GOLGA8M
2   chr15   28701759       29885066     NM_015307      FAM189A1
3   chr15   28701759       29885066     NM_138704        NSMCE3
4   chr15   28701759       29885066     NR_026589       WHAMMP2
5   chr15   28701759       29885066     NR_033351       GOLGA8F
6   chr15   28701759       29885066     NR_033353       GOLGA8G
7   chr15   28701759       29885066     NR_036443       HERC2P9
8   chr15   28701759       29885066     NR_036475  LOC100289656
9   chr15   28701759       29885066     NR_037599     PDCD6IPP2
10  chr15   28701759       29885066     NR_039734     MIR4509-3
11  chr15   28701759       29885066     NR_047567     GOLGA6L7P
12   chr2  242415175      242547707  NM_001164356         THAP4
13   chr2  242415175      242547707  NM_001271978         STK25
16   chr2  242415175      242547707     NM_014808         FARP2
18   chr2  242415175      242547707     NM_032515           BOK
19   chr2  242415175      242547707     NR_033346       BOK-AS1
20   chr2  242415175      242547707     NR_036083       MIR3133,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28604183       29945963  NM_001130414         APBA2
1   chr15   28604183       29945963  NM_001282468       GOLGA8M
2   chr15   28604183       29945963     NM_015307      FAM189A1
3   chr15   28604183       29945963     NM_138704        NSMCE3
4   chr15   28604183       29945963     NR_026589       WHAMMP2
5   chr15   28604183       29945963     NR_033351       GOLGA8F
7   chr15   28604183       29945963     NR_033353       GOLGA8G
9   chr15   28604183       29945963     NR_036443       HERC2P9
10  chr15   28604183       29945963     NR_036475  LOC100289656
11  chr15   28604183       29945963     NR_037599     PDCD6IPP2
12  chr15   28604183       29945963     NR_039734     MIR4509-3
14  chr15   28604183       29945963     NR_047567     GOLGA6L7P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21857136       22027206  NM_001163380         RAB2B
1   chr14   21857136       22027206  NM_001170629          CHD8
2   chr14   21857136       22027206  NM_001303523          TOX4
3   chr14   21857136       22027206     NM_019852        METTL3
6   chr14   21857136       22027206     NR_002916        SNORD8
7   chr14   21857136       22027206     NR_003029        SNORD9
8   chr14   21857136       22027206     NR_111966         SALL2
10  chr16   71096121       71563612  NM_001099642         CMTR2
11  chr16   71096121       71563612  NM_001166395         CHST4
12  chr16   71096121       71563612  NM_001198542         HYDIN
14  chr16   71096121       71563612  NM_001304492         ZNF23
19  chr16   71096121       71563612     NM_001740         CALB2
21  chr16   71096121       71563612     NM_006961         ZNF19
25  chr16   71096121       71563612     NR_135172  LOC105371335
26   chr9   39103455       39414604  NM_001085452     SPATA31A1
27   chr9   39103455       39414604     NM_033655       CNTNAP3
28   chr9   39103455       39414604     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   31467954       31582908     NM_032849         MEDAG
1   chr13   31467954       31582908     NM_152325         TEX26
2   chr13   31467954       31582908     NR_038287     TEX26-AS1
4   chr15   20945553       21178281  NM_001277303        POTEB2
5   chr15   20945553       21178281     NM_207355        POTEB3
6   chr15   20945553       21178281     NR_027992        NBEAP1
7   chr15   20945553       21178281     NR_028506         NF1P2
8   chr15   20945553       21178281     NR_036062     MIR3118-2
9   chr15   20945553       21178281     NR_040094     LINC01193
10  chr15   20945553       21178281     NR_049895     MIR5701-2
12  chr15   28724892       29188061  NM_001282468       GOLGA8M
13  chr15   28724892       29188061     NR_026589       WHAMMP2
14  chr15   28724892       29188061     NR_033351       GOLGA8F
15  chr15   28724892       29188061     NR_033353       GOLGA8G
16  chr15   28724892       29188061     NR_036443       HERC2P9
17  chr15   28724892       29188061     NR_036475  LOC100289656
18  chr15   28724892       29188061     NR_037599     PDCD6IPP2
19  chr15   28724892       29188061     NR_039734     MIR4509-3
20  chr15   28724892       29188061     NR_047567     GOLGA6L7P
21  chr18   63472816       63580678  NM_001317214          CDH7
24   chr5  167336666      167482261  NM_001080428         TENM2
26   chr8   22923703       23047688     NM_003840     TNFRSF10D
27   chr8   22923703       23047688     NM_003841     TNFRSF10C
28   chr8   22923703       23047688     NM_147187     TNFRSF10B
29   chr8   22923703       23047688     NR_038873     LOC286059
30   chr8   22923703       23047688     NR_046173     LOC254896
31   chr8  100527726      100882703     NM_017890        VPS13B
32   chr8  100527726      100882703     NR_030329        MIR599
33   chr8  100527726      100882703     NR_030596        MIR875,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12    9364626        9523326     NR_024374     LOC642846
1   chr12    9364626        9523326     NR_036466     LINC00987
2   chr12    9364626        9523326     NR_040112         A2MP1
3   chr12    9364626        9523326     NR_120479  LOC101930452
4   chr12    9364626        9523326     NR_128710     MIR1244-4
6   chr16   18471072       18742551  NM_001004060         NOMO2
7   chr16   18471072       18742551     NR_003569       ABCC6P1
8   chr16   18471072       18742551     NR_036140     MIR3179-1
9   chr16   18471072       18742551     NR_036142     MIR3180-2
10  chr16   18471072       18742551     NR_036144     MIR3180-3
11  chr16   18471072       18742551     NR_037442     MIR3670-1
12  chr16   18471072       18742551     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21698849       22056331  NM_001005465        OR10G3
1   chr14   21698849       22056331  NM_001163380         RAB2B
2   chr14   21698849       22056331  NM_001170629          CHD8
3   chr14   21698849       22056331  NM_001303523          TOX4
4   chr14   21698849       22056331     NM_007192       SUPT16H
5   chr14   21698849       22056331     NM_019852        METTL3
6   chr14   21698849       22056331     NM_020366       RPGRIP1
8   chr14   21698849       22056331     NM_031314        HNRNPC
10  chr14   21698849       22056331     NR_002916        SNORD8
11  chr14   21698849       22056331     NR_003029        SNORD9
12  chr14   21698849       22056331     NR_111966         SALL2
14  chr14   26966699       27091422     NM_002515         NOVA1
16  chr15   28627634       28826419     NR_033351       GOLGA8F
18  chr15   28627634       28826419     NR_033353       GOLGA8G
20  chr15   28627634       28826419     NR_039734     MIR4509-3
22   chr7   64031564       64161589  NM_001282360        ZNF107
23   chr7   64031564       64161589     NR_033245     LOC641746
24   chr7   64031564       64161589     NR_077227  LOC100128885
26   chr7   64031564       64161589     NR_106898       MIR6839
27   chr7  110728154      111595039  NM_001099658         LRRN3
28   chr7  110728154      111595039  NM_001244606        IMMP2L
29   chr7  110728154      111595039     NM_014705         DOCK4
31   chr7  110728154      111595039     NR_103806     DOCK4-AS1
32   chr9   39097909       39268920     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87423006       87562507  NM_001134492        HS2ST1
2    chr1  244989863      245193811  NM_001143943        EFCAB2
4    chr1  244989863      245193811  NM_001312871         COX20
6    chr1  244989863      245193811     NM_004501        HNRNPU
9    chr1  244989863      245193811     NR_111907  LOC101928068
10   chr1  244989863      245193811     NR_132782      SNORA100
11  chr10  134000068      134143477  NM_001318878        STK32C
15  chr10  134000068      134143477     NM_006426        DPYSL4
18  chr14   21811607       21942577  NM_001163380         RAB2B
19  chr14   21811607       21942577  NM_001170629          CHD8
20  chr14   21811607       21942577     NM_007192       SUPT16H
21  chr14   21811607       21942577     NM_020366       RPGRIP1
24  chr14   21811607       21942577     NR_002916        SNORD8
25  chr14   21811607       21942577     NR_003029        SNORD9
26   chr3  155601357      155708153     NM_003875          GMPS
27   chr4   56382544       56659050  NM_001267843         CLOCK
29   chr4   56382544       56659050     NM_006681           NMU
30   chr4   56382544       56659050     NM_152401         PDCL2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21813407       22538738  NM_001001912     OR4E2
1   chr14   21813407       22538738  NM_001005465    OR10G3
2   chr14   21813407       22538738  NM_001005466    OR10G2
3   chr14   21813407       22538738  NM_001163380     RAB2B
4   chr14   21813407       22538738  NM_001170629      CHD8
5   chr14   21813407       22538738  NM_001303523      TOX4
6   chr14   21813407       22538738  NM_001317107     OR4E1
7   chr14   21813407       22538738     NM_007192   SUPT16H
8   chr14   21813407       22538738     NM_019852    METTL3
9   chr14   21813407       22538738     NM_020366   RPGRIP1
12  chr14   21813407       22538738     NR_002916    SNORD8
13  chr14   21813407       22538738     NR_003029    SNORD9
14  chr14   21813407       22538738     NR_111966     SALL2
16   chr9    9839087        9990938     NM_002839     PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21811909       22003188  NM_001163380         RAB2B
1   chr14   21811909       22003188  NM_001170629          CHD8
2   chr14   21811909       22003188  NM_001303523          TOX4
3   chr14   21811909       22003188     NM_007192       SUPT16H
4   chr14   21811909       22003188     NM_019852        METTL3
5   chr14   21811909       22003188     NM_020366       RPGRIP1
8   chr14   21811909       22003188     NR_002916        SNORD8
9   chr14   21811909       22003188     NR_003029        SNORD9
10  chr14   21811909       22003188     NR_111966         SALL2
12  chr14   79532732       79693043     NM_004796         NRXN3
14  chr14   79532732       79693043     NR_135159  LOC105370586
15  chr19   21896932       22023943  NM_001256650         ZNF43
17  chr19   21896932       22023943     NM_173531        ZNF100
18  chr19   21896932       22023943     NR_024523     LOC641367
19   chr4  169190109      169683924  NM_001012967        DDX60L
20   chr4  169190109      169683924  NM_001166108         PALLD
23   chr4  169190109      169683924     NM_017631         DDX60
24   chr5   63767599       64201883  NM_001029875        RGS7BP
25   chr5   63767599       64201883  NM_001164442       FAM159B
26   chr5   63767599       64201883  NM_001297645         CWC27
29   chr5   63767599       64201883     NM_173829      SREK1IP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67843483       67990401  NM_001127384        CTNNA3
2   chr15   30291764       32765212  NM_001039841     ARHGAP11B
3   chr15   30291764       32765212  NM_001146094          FAN1
5   chr15   30291764       32765212  NM_001190455        CHRNA7
6   chr15   30291764       32765212  NM_001243538     LOC283710
7   chr15   30291764       32765212  NM_001252020         TRPM1
10  chr15   30291764       32765212  NM_001277308       GOLGA8O
11  chr15   30291764       32765212  NM_001282472       GOLGA8J
12  chr15   30291764       32765212  NM_001282484       GOLGA8R
13  chr15   30291764       32765212  NM_001282490       GOLGA8H
14  chr15   30291764       32765212  NM_001282493       GOLGA8K
15  chr15   30291764       32765212  NM_001302461         KLF13
16  chr15   30291764       32765212  NM_001329907        OTUD7A
19  chr15   30291764       32765212     NM_017762        MTMR10
21  chr15   30291764       32765212     NM_139320      CHRFAM7A
22  chr15   30291764       32765212     NR_026771  DKFZP434L187
23  chr15   30291764       32765212     NR_026858        ULK4P1
25  chr15   30291764       32765212     NR_026859        ULK4P3
27  chr15   30291764       32765212     NR_029624        MIR211
28  chr15   30291764       32765212     NR_033933       GOLGA8T
29  chr15   30291764       32765212     NR_038253  LOC100288637
31  chr15   30291764       32765212     NR_072991      HERC2P10
32  chr15   30291764       32765212     NR_135834  LOC102725022
33  chr16   21494196       21730561  NM_001077180        METTL9
34  chr16   21494196       21730561  NM_001161683          OTOA
36  chr16   21494196       21730561     NM_005849         IGSF6
39  chr16   21494196       21730561     NR_002594      SLC7A5P2
40  chr16   21494196       21730561     NR_027155        SMG1P3
41  chr16   21494196       21730561     NR_049833     MIR3680-2
42  chr16   21494196       21730561     NR_110930  LOC101927814,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr16   28721508       28827806  NM_001199142        EIF3C
2   chr16   28721508       28827806  NM_001287251       NPIPB9
3   chr16   28721508       28827806  NM_001317856       EIF3CL
4   chr16   28721508       28827806     NR_107058    MIR6862-2
5   chr18   56118804       56257673     NM_052947        ALPK2
6   chr20   14715160       15563104  NM_001033087      MACROD2
8   chr20   14715160       15563104     NR_037841  MACROD2-AS1
10   chr6   45006820       45217741  NM_001261823       SUPT3H
11   chr6   45006820       45217741     NR_030313       MIR586
12   chr7   16743315       16846250  NM_001159767         BZW2
13   chr7   16743315       16846250     NM_006408         AGR2
14   chr7   16743315       16846250     NM_014399      TSPAN13,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   54224184       57658351     NM_000242          MBL2
1   chr10   54224184       57658351  NM_001142770        PCDH15
4   chr10   54224184       57658351  NM_001190478      MTRNR2L5
5   chr10   54224184       57658351     NR_031642      MIR548F1
6   chr10   54224184       57658351     NR_120641     LINC01468
7   chr10   54224184       57658351     NR_134503  LOC105378311
8   chr14   21813540       22330802  NM_001001912         OR4E2
9   chr14   21813540       22330802  NM_001005465        OR10G3
10  chr14   21813540       22330802  NM_001005466        OR10G2
11  chr14   21813540       22330802  NM_001163380         RAB2B
12  chr14   21813540       22330802  NM_001170629          CHD8
13  chr14   21813540       22330802  NM_001303523          TOX4
14  chr14   21813540       22330802  NM_001317107         OR4E1
15  chr14   21813540       22330802     NM_007192       SUPT16H
16  chr14   21813540       22330802     NM_019852        METTL3
17  chr14   21813540       22330802     NM_020366       RPGRIP1
20  chr14   21813540       22330802     NR_002916        SNORD8
21  chr14   21813540       22330802     NR_003029        SNORD9
22  chr14   21813540       22330802     NR_111966         SALL2
24   chr2  167141803      167262370     NM_002976         SCN7A
25   chr2  167141803      167262370     NM_002977         SCN9A
26   chr2  167141803      167262370     NR_110260  LOC101929680
27   chr9   39106023       39236030     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11     680893         821714     NM_001004      RPLP2
1   chr11     680893         821714  NM_001042463     TMEM80
2   chr11     680893         821714  NM_001191060   SLC25A22
5   chr11     680893         821714  NM_001293167      PANO1
6   chr11     680893         821714  NM_001318824      PDDC1
7   chr11     680893         821714     NM_006755     TALDO1
8   chr11     680893         821714     NM_016564      CEND1
9   chr11     680893         821714     NM_020376     PNPLA2
10  chr11     680893         821714     NM_021008      DEAF1
11  chr11     680893         821714     NM_022772     EPS8L2
13  chr11     680893         821714     NM_145886      PIDD1
14  chr11     680893         821714     NR_002585    SNORA52
15  chr11     680893         821714     NR_126342  LOC171391
16  chr14   21718409       21992386  NM_001163380      RAB2B
17  chr14   21718409       21992386  NM_001170629       CHD8
18  chr14   21718409       21992386  NM_001303523       TOX4
19  chr14   21718409       21992386     NM_007192    SUPT16H
20  chr14   21718409       21992386     NM_019852     METTL3
21  chr14   21718409       21992386     NM_020366    RPGRIP1
23  chr14   21718409       21992386     NM_031314     HNRNPC
25  chr14   21718409       21992386     NR_002916     SNORD8
26  chr14   21718409       21992386     NR_003029     SNORD9
27  chr14   21718409       21992386     NR_111966      SALL2
29  chr17   47868331       48069748  NM_001077503       TAC4
30  chr17   47868331       48069748  NM_001199158       KAT7
31  chr17   47868331       48069748  NM_001242791   FLJ45513
32  chr17   47868331       48069748     NM_001934       DLX4
33  chr17   47868331       48069748     NM_005220       DLX3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   26982918       27122419     NM_002515        NOVA1
2   chr19   47808094       47970083  NM_001009813        MEIS3
3   chr19   47808094       47970083  NM_001271749        C5AR2
7   chr19   47808094       47970083     NM_001736        C5AR1
8   chr19   47808094       47970083     NM_014681        DHX34
9   chr19   47808094       47970083     NM_015063       SLC8A2
11   chr2  110186958      110332233  NM_001099289       SH3RF3
12   chr2  110186958      110332233  NM_001321504       SEPT10
14  chr20   14486905       14870431     NM_080676      MACROD2
15  chr20   14486905       14870431     NR_037841  MACROD2-AS1
16  chr20   14486905       14870431     NR_104193  MACROD2-IT1
17   chr4   48021170       48125053     NM_003328          TXK
18   chr4   48021170       48125053     NM_207330       NIPAL1
19   chr7   75891444       76013617  NM_001110199        SRRM3
20   chr7   75891444       76013617     NM_001540        HSPB1
21   chr7   75891444       76013617     NM_012479        YWHAG
22   chr7  110544496      110669284  NM_001244606       IMMP2L
24   chr7  123440829      123597537  NM_001174044        SPAM1
27   chr7  123440829      123597537     NM_012269        HYAL4
28   chr7  123440829      123597537     NR_002731       HYALP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21749647       22181878  NM_001001912         OR4E2
1   chr14   21749647       22181878  NM_001005465        OR10G3
2   chr14   21749647       22181878  NM_001005466        OR10G2
3   chr14   21749647       22181878  NM_001163380         RAB2B
4   chr14   21749647       22181878  NM_001170629          CHD8
5   chr14   21749647       22181878  NM_001303523          TOX4
6   chr14   21749647       22181878  NM_001317107         OR4E1
7   chr14   21749647       22181878     NM_007192       SUPT16H
8   chr14   21749647       22181878     NM_019852        METTL3
9   chr14   21749647       22181878     NM_020366       RPGRIP1
12  chr14   21749647       22181878     NR_002916        SNORD8
13  chr14   21749647       22181878     NR_003029        SNORD9
14  chr14   21749647       22181878     NR_111966         SALL2
16  chr17    1156043        1306081  NM_001164405        BHLHA9
17  chr17    1156043        1306081     NM_006761         YWHAE
18  chr17    1156043        1306081     NM_172367         TUSC5
19  chr22   20066585       20536262  NM_001190326         DGCR8
20  chr22   20066585       20536262  NM_001242313      TMEM191B
21  chr22   20066585       20536262  NM_001243537       CCDC188
22  chr22   20066585       20536262  NM_001278639        RANBP1
25  chr22   20066585       20536262     NM_013373        ZDHHC8
26  chr22   20066585       20536262     NM_015672        RIMBP3
27  chr22   20066585       20536262     NM_022727        TRMT2A
28  chr22   20066585       20536262     NM_023004         RTN4R
29  chr22   20066585       20536262     NM_033257        DGCR6L
30  chr22   20066585       20536262     NR_003563       PI4KAP1
31  chr22   20066585       20536262     NR_026919     LINC00896
32  chr22   20066585       20536262     NR_031618       MIR1286
33  chr22   20066585       20536262     NR_031706       MIR1306
34  chr22   20066585       20536262     NR_037412       MIR3618
35  chr22   20066585       20536262     NR_038460     LOC284865
36  chr22   20066585       20536262     NR_106874       MIR6816
37  chr22   20066585       20536262     NR_136560       FAM230A
38  chr22   20066585       20536262     NR_136572  LOC101927859
39   chr3  148114654      148471646     NM_009585         AGTR1
41   chr9   25471104       26760767  NM_001004125         TUSC1
42   chr9   25471104       26760767  NM_001004352  LOC100506422
43   chr9   25471104       26760767     NR_121604     LINC01241,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81462755       81627120  NM_001278495      NUTM2B
1   chr10   81462755       81627120     NR_029407   LOC642361
2   chr10   81462755       81627120     NR_120611  NUTM2B-AS1
5   chr12   72616418       72789587     NM_013381       TRHDE
6   chr12   72616418       72789587     NR_026836   TRHDE-AS1
8   chr14   21859695       21963131  NM_001163380       RAB2B
9   chr14   21859695       21963131  NM_001170629        CHD8
10  chr14   21859695       21963131  NM_001303523        TOX4
13  chr14   21859695       21963131     NR_002916      SNORD8
14  chr14   21859695       21963131     NR_003029      SNORD9
15   chr8  125006282      125130668  NM_001039112      FER1L6
16   chr8  125006282      125130668     NR_040044  FER1L6-AS1
17   chr8  125006282      125130668     NR_103547  FER1L6-AS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   45705367       46331494     NM_018353      MIS18BP1
1   chr20   14747513       14877557     NM_080676       MACROD2
2   chr20   14747513       14877557     NR_037841   MACROD2-AS1
3    chr4    9131399        9271177  NM_001256852      USP17L10
4    chr4    9131399        9271177  NM_001256853      USP17L12
6    chr4    9131399        9271177  NM_001256854      USP17L11
9    chr4    9131399        9271177  NM_001256855      USP17L13
10   chr4    9131399        9271177  NM_001256857      USP17L17
11   chr4    9131399        9271177  NM_001256860      USP17L19
12   chr4    9131399        9271177  NM_001256861      USP17L20
13   chr4    9131399        9271177  NM_001256894      USP17L15
14   chr7   63844187       64310447  NM_001130022        ZNF680
15   chr7   63844187       64310447  NM_001160183        ZNF138
16   chr7   63844187       64310447  NM_001282360        ZNF107
18   chr7   63844187       64310447     NR_029404       YWHAEP1
19   chr7   63844187       64310447     NR_033245     LOC641746
21   chr7   63844187       64310447     NR_077227  LOC100128885
23   chr7   63844187       64310447     NR_106898       MIR6839,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0     chr1   14918684       22649845     NM_000085        CLCNKB
1     chr1   14918684       22649845     NM_000478          ALPL
2     chr1   14918684       22649845     NM_000871          HTR6
3     chr1   14918684       22649845     NM_000929        PLA2G5
4     chr1   14918684       22649845  NM_001011722     ARHGEF10L
5     chr1   14918684       22649845  NM_001013641        TMEM82
6     chr1   14918684       22649845  NM_001013693       LDLRAD2
7     chr1   14918684       22649845  NM_001017999          KAZN
10    chr1   14918684       22649845  NM_001024215        FBLIM1
12    chr1   14918684       22649845  NM_001032363        MINOS1
13    chr1   14918684       22649845  NM_001032730         USP48
14    chr1   14918684       22649845  NM_001039500        VWA5B1
15    chr1   14918684       22649845  NM_001040125         PQLC2
16    chr1   14918684       22649845  NM_001089591        UQCRHL
17    chr1   14918684       22649845  NM_001103160         SH2D5
18    chr1   14918684       22649845  NM_001113347          ECE1
21    chr1   14918684       22649845  NM_001114600         SZRD1
22    chr1   14918684       22649845  NM_001122819         KIF17
23    chr1   14918684       22649845  NM_001135254          PAX7
24    chr1   14918684       22649845  NM_001136204          RCC2
25    chr1   14918684       22649845  NM_001136216        TMEM51
27    chr1   14918684       22649845  NM_001136265         IFFO2
28    chr1   14918684       22649845  NM_001145277        NECAP2
29    chr1   14918684       22649845  NM_001145657       RAP1GAP
31    chr1   14918684       22649845  NM_001161504       ALDH4A1
32    chr1   14918684       22649845  NM_001161728       PLA2G2A
35    chr1   14918684       22649845  NM_001198801        EIF4G3
37    chr1   14918684       22649845  NM_001204084          NBL1
40    chr1   14918684       22649845  NM_001204088   MINOS1-NBL1
41    chr1   14918684       22649845  NM_001206541         CAPZB
..     ...        ...            ...           ...           ...
145   chr1   14918684       22649845     NR_037847  LOC100506730
146   chr1   14918684       22649845     NR_038404  LOC100506801
147   chr1   14918684       22649845     NR_039613       MIR4418
148   chr1   14918684       22649845     NR_039768       MIR3972
149   chr1   14918684       22649845     NR_039844       MIR4695
150   chr1   14918684       22649845     NR_039973       MIR5096
151   chr1   14918684       22649845     NR_040288         AKR7L
152   chr1   14918684       22649845     NR_046176         NBPF3
153   chr1   14918684       22649845     NR_046507      PINK1-AS
154   chr1   14918684       22649845     NR_077246       RPS14P3
156   chr1   14918684       22649845     NR_106732       MIR6084
158   chr1   14918684       22649845     NR_109898       DNAJC16
159   chr1   14918684       22649845     NR_110078    UBXN10-AS1
160   chr1   14918684       22649845     NR_110692  LOC101928043
161   chr1   14918684       22649845     NR_125946  LOC101927876
162   chr1   14918684       22649845     NR_135054  LOC105378614
163   chr1   14918684       22649845     NR_135056  LOC105376805
166   chr1   14918684       22649845     NR_135114  LOC101927895
168   chr1   14918684       22649845     NR_135764  LOC100132147
169   chr1   14918684       22649845     NR_135765     LOC440570
171   chr1   14918684       22649845     NR_135824  LOC102724562
173  chr10   68405323       68651986  NM_001127384        CTNNA3
175  chr12   71454766       71685001     NM_004616        TSPAN8
176  chr14   21766683       21905611  NM_001170629          CHD8
177  chr14   21766683       21905611     NM_007192       SUPT16H
178  chr14   21766683       21905611     NM_020366       RPGRIP1
180  chr14   21766683       21905611     NR_002916        SNORD8
181  chr14   21766683       21905611     NR_003029        SNORD9
182   chr4  121655474      121800667     NM_018699         PRDM5
183   chr5   20438612       20618340  NM_001291956         CDH18

[137 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   31462511       31573470     NM_032849         MEDAG
1   chr13   31462511       31573470     NM_152325         TEX26
2   chr13   31462511       31573470     NR_038287     TEX26-AS1
4   chr16   16364849       16527166  NM_001004067         NOMO3
5   chr16   16364849       16527166  NM_001282511        NPIPA8
6   chr16   16364849       16527166     NR_036140     MIR3179-1
7   chr16   16364849       16527166     NR_036141     MIR3180-1
8   chr16   16364849       16527166     NR_036142     MIR3180-2
9   chr16   16364849       16527166     NR_036447        PKD1P1
10  chr16   16364849       16527166     NR_103772  LOC100288162
11  chr16   16364849       16527166     NR_106766     MIR6511A1
12  chr16   16364849       16527166     NR_106971     MIR6511A4
13  chr16   16364849       16527166     NR_107060     MIR6770-2
14  chr16   16364849       16527166     NR_128713     MIR3670-4
15   chr3     813772         919112     NR_110118     LINC01266
16   chr3    1308835        1459122  NM_001289081         CNTN6
17   chr4  169181958      169282256  NM_001012967        DDX60L
18   chr4  169181958      169282256     NM_017631         DDX60,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21560548       21991440  NM_001004731       OR5AU1
1   chr14   21560548       21991440  NM_001101672       ZNF219
3   chr14   21560548       21991440  NM_001146683      TMEM253
4   chr14   21560548       21991440  NM_001163380        RAB2B
5   chr14   21560548       21991440  NM_001170629         CHD8
6   chr14   21560548       21991440  NM_001303523         TOX4
7   chr14   21560548       21991440     NM_007192      SUPT16H
9   chr14   21560548       21991440     NM_019852       METTL3
10  chr14   21560548       21991440     NM_020366      RPGRIP1
12  chr14   21560548       21991440     NM_031314       HNRNPC
14  chr14   21560548       21991440     NR_002916       SNORD8
15  chr14   21560548       21991440     NR_003029       SNORD9
16  chr14   21560548       21991440     NR_038970    LINC00641
18  chr14   21560548       21991440     NR_111966        SALL2
20   chr2   24967003       25472634  NM_001013663       PTRHD1
21   chr2   24967003       25472634  NM_001198559      DNAJC27
22   chr2   24967003       25472634  NM_001319099        EFR3B
23   chr2   24967003       25472634  NM_001319205         POMC
24   chr2   24967003       25472634  NM_001320613        ADCY3
25   chr2   24967003       25472634  NM_001320893       DNMT3A
26   chr2   24967003       25472634  NM_001322101        CENPO
27   chr2   24967003       25472634     NM_003743        NCOA1
32   chr2   24967003       25472634     NR_034113  DNAJC27-AS1
33   chr2   24967003       25472634     NR_132378    LINC01381
34   chr2   35385028       36159105     NR_039629     MIR548AD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63384138       63810749     NR_126409     LINC00376
1   chr15   28682386       29348827  NM_001130414         APBA2
2   chr15   28682386       29348827  NM_001282468       GOLGA8M
3   chr15   28682386       29348827     NR_026589       WHAMMP2
4   chr15   28682386       29348827     NR_033351       GOLGA8F
5   chr15   28682386       29348827     NR_033353       GOLGA8G
6   chr15   28682386       29348827     NR_036443       HERC2P9
7   chr15   28682386       29348827     NR_036475  LOC100289656
8   chr15   28682386       29348827     NR_037599     PDCD6IPP2
9   chr15   28682386       29348827     NR_039734     MIR4509-3
10  chr15   28682386       29348827     NR_047567     GOLGA6L7P
11  chr15   65439774       65672169     NM_003613          CILP
12  chr15   65439774       65672169     NM_004884        IGDCC3
13  chr15   65439774       65672169     NM_006660          CLPX
14  chr15   65439774       65672169     NM_017851        PARP16
15   chr4   94188490       94450593     NM_001510         GRID2
16   chr6   94358186       94514780     NR_015362          TSG1
17   chr7   75732744       75900107  NM_001110199         SRRM3
18   chr7   75732744       75900107     NR_135079       GTF2IP7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   19655165       19758601     NM_006001        TUBA3C
1   chr13   19655165       19758601     NR_126054  LOC101928697
2   chr14   21832191       22717028  NM_001001912         OR4E2
3   chr14   21832191       22717028  NM_001005465        OR10G3
4   chr14   21832191       22717028  NM_001005466        OR10G2
5   chr14   21832191       22717028  NM_001163380         RAB2B
6   chr14   21832191       22717028  NM_001170629          CHD8
7   chr14   21832191       22717028  NM_001303523          TOX4
8   chr14   21832191       22717028  NM_001317107         OR4E1
9   chr14   21832191       22717028     NM_007192       SUPT16H
10  chr14   21832191       22717028     NM_019852        METTL3
13  chr14   21832191       22717028     NR_002916        SNORD8
14  chr14   21832191       22717028     NR_003029        SNORD9
15  chr14   21832191       22717028     NR_111966         SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21865851       21983924  NM_001163380         RAB2B
1   chr14   21865851       21983924  NM_001170629          CHD8
2   chr14   21865851       21983924  NM_001303523          TOX4
3   chr14   21865851       21983924     NM_019852        METTL3
6   chr16   85229130       85337223     NR_038859     LINC00311
7   chr22   20573375       20744797     NR_136569     LOC729461
8   chr22   20573375       20744797     NR_136572  LOC101927859
9    chr7   64034228       64158334  NM_001282360        ZNF107
10   chr7   64034228       64158334     NR_033245     LOC641746
11   chr7   64034228       64158334     NR_077227  LOC100128885
13   chr7   64034228       64158334     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   76818143       77609785  NM_001129979        SYCE1L
1   chr16   76818143       77609785  NM_001286639         MON1B
2   chr16   76818143       77609785  NM_001326358      ADAMTS18
3   chr16   76818143       77609785     NR_039870       MIR4719
4   chr22   17248078       17717647  NM_001037814          GAB4
5   chr22   17248078       17717647  NM_001163079         CECR6
6   chr22   17248078       17717647  NM_001282227         CECR1
8   chr22   17248078       17717647  NM_001289905        IL17RA
9   chr22   17248078       17717647     NM_017829         CECR5
12  chr22   17248078       17717647     NM_175878          XKR3
14  chr22   17248078       17717647     NR_003607       HSFY1P1
15  chr22   17248078       17717647     NR_015352         CECR7
16  chr22   17248078       17717647     NR_024482     CECR5-AS1
17  chr22   17248078       17717647     NR_103793  LOC100996342
18   chr4   69188073       69548888  NM_001031732        YTHDC1
19   chr4   69188073       69548888     NM_001076       UGT2B15
20   chr4   69188073       69548888     NM_001077       UGT2B17
21   chr4   69188073       69548888     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21855437       23163396  NM_001001912      OR4E2
1   chr14   21855437       23163396  NM_001005465     OR10G3
2   chr14   21855437       23163396  NM_001005466     OR10G2
3   chr14   21855437       23163396  NM_001163380      RAB2B
4   chr14   21855437       23163396  NM_001170629       CHD8
5   chr14   21855437       23163396  NM_001303523       TOX4
6   chr14   21855437       23163396  NM_001317107      OR4E1
7   chr14   21855437       23163396     NM_001344       DAD1
8   chr14   21855437       23163396     NM_019852     METTL3
10  chr14   21855437       23163396     NM_022060      ABHD4
12  chr14   21855437       23163396     NR_002916     SNORD8
13  chr14   21855437       23163396     NR_003029     SNORD9
14  chr14   21855437       23163396     NR_111966      SALL2
16  chr16   29672589       29919480  NM_001030288        SPN
17  chr16   29672589       29919480  NM_001114099     SEZ6L2
18  chr16   29672589       29919480  NM_001256269      KIF22
20  chr16   29672589       29919480  NM_001256443      PRRT2
21  chr16   29672589       29919480  NM_001276275        MAZ
22  chr16   29672589       29919480  NM_001286585      CDIPT
23  chr16   29672589       29919480  NM_001293204        MVP
24  chr16   29672589       29919480  NM_001318249       QPRT
28  chr16   29672589       29919480     NM_024516      PAGR1
29  chr16   29672589       29919480     NM_152338       ZG16
30  chr16   29672589       29919480     NM_175900   C16orf54
31  chr16   29672589       29919480     NM_178863     KCTD13
32  chr16   29672589       29919480     NM_181718     ASPHD1
33  chr16   29672589       29919480     NR_015396  CDIPT-AS1
35  chr18   14733694       15333897  NM_001145029   ANKRD30B
36  chr18   14733694       15333897     NR_027417  LOC644669
37  chr18   14733694       15333897     NR_036153  MIR3156-2
38  chr18   14733694       15333897     NR_104164  LINC01443
39  chr18   14733694       15333897     NR_110783  LINC01444,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  186259171      186700601     NM_173651         FSIP2
1   chr2  186259171      186700601     NR_110214  LOC101927196
4   chr2  186259171      186700601     NR_144453     FSIP2-AS1
6   chr7  110542273      110735726  NM_001099658         LRRN3
7   chr7  110542273      110735726  NM_001244606        IMMP2L
9   chr7  157319721      157442507  NM_001308267        PTPRN2
11  chr7  157319721      157442507     NR_029689      MIR153-2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21724174       21928912  NM_001163380     RAB2B
1  chr14   21724174       21928912  NM_001170629      CHD8
2  chr14   21724174       21928912     NM_007192   SUPT16H
3  chr14   21724174       21928912     NM_020366   RPGRIP1
5  chr14   21724174       21928912     NM_031314    HNRNPC
7  chr14   21724174       21928912     NR_002916    SNORD8
8  chr14   21724174       21928912     NR_003029    SNORD9
9   chr7   69316832       69590809  NM_001127231     AUTS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2   78022080       78148242     NR_110286  LOC101927926
1    chr2   78022080       78148242     NR_110288  LOC101927967
2   chr20   14826184       14951624     NM_080676       MACROD2
3   chr20   14826184       14951624     NR_037841   MACROD2-AS1
5   chr21   28100815       28292619     NM_006988       ADAMTS1
6   chr21   28100815       28292619     NM_007038       ADAMTS5
7    chr7    6932075        7135482     NR_034022  LOC100131257
8    chr7    6932075        7135482     NR_037454       MIR3683
9    chr9     186860         300938  NM_001190458         DOCK8
10   chr9     186860         300938     NM_152569       C9orf66
12   chr9   39116665       39420100  NM_001085452     SPATA31A1
13   chr9   39116665       39420100     NM_033655       CNTNAP3
14   chr9   39116665       39420100     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28622602       29290577  NM_001130414         APBA2
1   chr15   28622602       29290577  NM_001282468       GOLGA8M
2   chr15   28622602       29290577     NR_026589       WHAMMP2
3   chr15   28622602       29290577     NR_033351       GOLGA8F
5   chr15   28622602       29290577     NR_033353       GOLGA8G
7   chr15   28622602       29290577     NR_036443       HERC2P9
8   chr15   28622602       29290577     NR_036475  LOC100289656
9   chr15   28622602       29290577     NR_037599     PDCD6IPP2
10  chr15   28622602       29290577     NR_039734     MIR4509-3
12  chr15   28622602       29290577     NR_047567     GOLGA6L7P
13  chr21   13538150       15094391     NM_174981         POTED
14  chr21   13538150       15094391     NR_026916    ANKRD30BP2
15  chr21   13538150       15094391     NR_036061     MIR3118-1
16  chr21   13538150       15094391     NR_036164     MIR3156-3
17  chr21   13538150       15094391     NR_110544  LOC102724188
18   chr3   17305457       17458956  NM_001134381        TBC1D5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   97997359       98221458     NR_077240     LOC643711
2   chr14   21778467       22061960  NM_001005465        OR10G3
3   chr14   21778467       22061960  NM_001163380         RAB2B
4   chr14   21778467       22061960  NM_001170629          CHD8
5   chr14   21778467       22061960  NM_001303523          TOX4
6   chr14   21778467       22061960     NM_007192       SUPT16H
7   chr14   21778467       22061960     NM_019852        METTL3
8   chr14   21778467       22061960     NM_020366       RPGRIP1
11  chr14   21778467       22061960     NR_002916        SNORD8
12  chr14   21778467       22061960     NR_003029        SNORD9
13  chr14   21778467       22061960     NR_111966         SALL2
15  chr16   21540343       22094239  NM_001077180        METTL9
16  chr16   21540343       22094239  NM_001161683          OTOA
17  chr16   21540343       22094239  NM_001164579      C16orf52
19  chr16   21540343       22094239  NM_001310148        NPIPB4
20  chr16   21540343       22094239     NM_003366        UQCRC2
21  chr16   21540343       22094239     NM_005849         IGSF6
24  chr16   21540343       22094239     NM_173806         PDZD9
25  chr16   21540343       22094239     NR_003370        RRN3P1
26  chr16   21540343       22094239     NR_110930  LOC101927814
27   chr2   97444251       97675030  NM_001122646       FAM178B
29   chr2   97444251       97675030     NM_016466       ANKRD39
31   chr2   97444251       97675030     NM_017623         CNNM3
32   chr2   97444251       97675030     NM_017789        SEMA4C
33   chr2   97444251       97675030     NM_020184         CNNM4
34   chr2   97444251       97675030     NM_144994       ANKRD23
35   chr2   97444251       97675030     NR_036074       MIR3127
36   chr2   97444251       97675030     NR_110209  LOC101927053
37   chr3  146636157      146976915     NR_135560  LOC101927866,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143743218      144206078  NM_001123068       PPIAL4G
1    chr1  143743218      144206078  NM_001278267        NBPF20
2    chr1  143743218      144206078  NM_001287385        FAM72C
3    chr1  143743218      144206078  NM_001345942        FAM72D
7    chr1  143743218      144206078     NR_104014     LINC01138
9   chr11   25090322       25329019  NM_001009909         LUZP2
10  chr14   47877926       48744811  NM_001113498         MDGA2
11  chr14   47877926       48744811     NR_037503       MIR548Y
12  chr14   47877926       48744811     NR_039996     LINC00648
13  chr18   24708456       24909554  NM_001256316         CHST9
14   chr4  108649452      108784772  NM_001136258         SGMS2
15   chr4  108649452      108784772     NR_125929  LOC101929595,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    1122168        1267092  NM_001304359        MUC5AC
1   chr11    1122168        1267092     NM_002458         MUC5B
2   chr15   30265443       30939287  NM_001039841     ARHGAP11B
3   chr15   30265443       30939287  NM_001282472       GOLGA8J
4   chr15   30265443       30939287  NM_001282484       GOLGA8R
5   chr15   30265443       30939287  NM_001282490       GOLGA8H
6   chr15   30265443       30939287     NM_139320      CHRFAM7A
7   chr15   30265443       30939287     NR_026771  DKFZP434L187
8   chr15   30265443       30939287     NR_026858        ULK4P1
9   chr15   30265443       30939287     NR_026859        ULK4P3
10  chr15   30265443       30939287     NR_033933       GOLGA8T
11  chr15   30265443       30939287     NR_038253  LOC100288637
12  chr16   16367074       16771356  NM_001004067         NOMO3
13  chr16   16367074       16771356  NM_001282511        NPIPA8
14  chr16   16367074       16771356     NR_036140     MIR3179-1
15  chr16   16367074       16771356     NR_036141     MIR3180-1
16  chr16   16367074       16771356     NR_036142     MIR3180-2
17  chr16   16367074       16771356     NR_036447        PKD1P1
18  chr16   16367074       16771356     NR_103772  LOC100288162
19  chr16   16367074       16771356     NR_106766     MIR6511A1
20  chr16   16367074       16771356     NR_106971     MIR6511A4
21  chr16   16367074       16771356     NR_107060     MIR6770-2
22  chr16   16367074       16771356     NR_128713     MIR3670-4
23  chr17   78230271       78341787  NM_001256071        RNF213
25  chr17   78230271       78341787     NR_029376  LOC100294362
26  chr21   36017711       36129861  NM_001317009         CLIC6
27  chr21   36017711       36129861     NR_024351     LINC00160
28  chr21   36017711       36129861     NR_038885     LINC01426
30   chr4   69235891       69344958     NM_014058     TMPRSS11E
31   chr4   94122872       94549445     NM_001510         GRID2
32   chr5   95355279       95500800     NR_030309        MIR583
33   chr5   95355279       95500800     NR_130776  LOC101929710
34   chr7    3802189        3906790     NM_152744          SDK1
35   chr7   18602743       18782240  NM_001204144         HDAC9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145357650      145461965  NM_001277444         NBPF9
1    chr1  145357650      145461965  NM_001278267        NBPF20
2    chr1  145357650      145461965  NM_001302371        NBPF10
3    chr1  145357650      145461965  NM_001313972         TXNIP
5    chr1  145357650      145461965     NM_032305       POLR3GL
6    chr1  145357650      145461965     NM_145277          HFE2
7    chr1  145357650      145461965     NR_104217       NBPF25P
8    chr1  145357650      145461965     NR_125967  LOC101928979
9   chr16   16370630       16500599  NM_001004067         NOMO3
10  chr16   16370630       16500599  NM_001282511        NPIPA8
11  chr16   16370630       16500599     NR_036140     MIR3179-1
12  chr16   16370630       16500599     NR_036141     MIR3180-1
13  chr16   16370630       16500599     NR_036142     MIR3180-2
14  chr16   16370630       16500599     NR_036447        PKD1P1
15  chr16   16370630       16500599     NR_103772  LOC100288162
16  chr16   16370630       16500599     NR_106766     MIR6511A1
17  chr16   16370630       16500599     NR_106971     MIR6511A4
18  chr16   16370630       16500599     NR_107060     MIR6770-2
19  chr16   16370630       16500599     NR_128713     MIR3670-4
20  chr19   21466883       21850409  NM_001001415        ZNF429
21  chr19   21466883       21850409  NM_001297560        ZNF708
24  chr19   21466883       21850409     NM_145326        ZNF493
26  chr19   21466883       21850409     NR_027130        ZNF738
27  chr19   21466883       21850409     NR_037194     LINC00664
28   chr2  108751520      108992538  NM_001008743       SULT1C3
29   chr2  108751520      108992538     NM_001056       SULT1C2
31   chr2  108751520      108992538     NR_037191     SULT1C2P1
32   chr2  108751520      108992538     NR_131251     LINC01594
33   chr2  130535393      130974505  NM_001099771         POTEF
34   chr2  130535393      130974505  NM_001258307       CCDC74B
35   chr2  130535393      130974505  NM_001330282         MZT2B
36   chr2  130535393      130974505     NM_017951         SMPD4
37   chr2  130535393      130974505     NM_032144         RAB6C
38   chr2  130535393      130974505     NM_207312        TUBA3E
39   chr2  130535393      130974505     NR_026740     LOC389033
40   chr2  130535393      130974505     NR_026758        FAR2P1
42   chr2  130535393      130974505     NR_033903       MED15P9
43   chr2  130535393      130974505     NR_036537     RAB6C-AS1
44   chr2  130535393      130974505     NR_110285  LOC101927924
45   chr4  121691723      121886400     NM_018699         PRDM5
46   chr9   41496126       41596847  NM_001113541     SPATA31A5
47   chr9   41496126       41596847     NM_015667     SPATA31A7
48   chr9   41496126       41596847     NR_003528       ZNF658B
49   chr9   41496126       41596847     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21818829       22071743  NM_001005465       OR10G3
1   chr14   21818829       22071743  NM_001163380        RAB2B
2   chr14   21818829       22071743  NM_001170629         CHD8
3   chr14   21818829       22071743  NM_001303523         TOX4
4   chr14   21818829       22071743     NM_007192      SUPT16H
5   chr14   21818829       22071743     NM_019852       METTL3
6   chr14   21818829       22071743     NM_020366      RPGRIP1
9   chr14   21818829       22071743     NR_002916       SNORD8
10  chr14   21818829       22071743     NR_003029       SNORD9
11  chr14   21818829       22071743     NR_111966        SALL2
13  chr20   14752894       15064098     NM_080676      MACROD2
14  chr20   14752894       15064098     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27622102       27725283  NM_001034842        PTCHD3
1   chr10   27622102       27725283     NR_138082       ARMC4P1
2   chr11   81838113       82127448     NR_120571     MIR4300HG
3   chr14   21808741       22065202  NM_001005465        OR10G3
4   chr14   21808741       22065202  NM_001163380         RAB2B
5   chr14   21808741       22065202  NM_001170629          CHD8
6   chr14   21808741       22065202  NM_001303523          TOX4
7   chr14   21808741       22065202     NM_007192       SUPT16H
8   chr14   21808741       22065202     NM_019852        METTL3
9   chr14   21808741       22065202     NM_020366       RPGRIP1
12  chr14   21808741       22065202     NR_002916        SNORD8
13  chr14   21808741       22065202     NR_003029        SNORD9
14  chr14   21808741       22065202     NR_111966         SALL2
16  chr16   14976683       15190248  NM_001270767         NTAN1
17  chr16   14976683       15190248  NM_001285445        PDXDC1
22  chr16   14976683       15190248  NM_001301064          RRN3
24  chr16   14976683       15190248     NM_006985        NPIPA1
25  chr16   14976683       15190248     NM_014287         NOMO1
26  chr16   14976683       15190248     NR_036140     MIR3179-1
27  chr16   14976683       15190248     NR_036141     MIR3180-1
28  chr16   14976683       15190248     NR_036142     MIR3180-2
29  chr16   14976683       15190248     NR_103772  LOC100288162
30  chr16   14976683       15190248     NR_106970     MIR6511A3
31  chr16   14976683       15190248     NR_107060     MIR6770-2
32  chr16   14976683       15190248     NR_125434  LOC100505915
33  chr16   14976683       15190248     NR_128713     MIR3670-4
34  chr22   17184115       17310910     NM_175878          XKR3
35  chr22   17184115       17310910     NR_003607       HSFY1P1
36  chr22   17184115       17310910     NR_134584  LOC101929350,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   47882056       48080410  NM_001113498      MDGA2
1  chr16   16426714       16565642  NM_001282511     NPIPA8
2  chr16   16426714       16565642     NR_036447     PKD1P1
3  chr16   16426714       16565642     NR_106971  MIR6511A4,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   19167449       19556204  NM_001142308       MALRD1
1   chr17    3331381        3476656     NM_000049         ASPA
3   chr17    3331381        3476656  NM_001170696      SPATA22
8   chr17    3331381        3476656     NM_003554        OR1E2
9   chr17    3331381        3476656     NM_018727        TRPV1
14  chr17    3331381        3476656     NM_145068        TRPV3
15  chr20   14869433       15175621     NM_080676      MACROD2
16  chr20   14869433       15175621     NR_037841  MACROD2-AS1
18   chr4   91153177       91744406  NM_001145065       CCSER1
20   chr6  116492059      117104132  NM_001010892       RSPH4A
21   chr6  116492059      117104132  NM_001085480      FAM162B
22   chr6  116492059      117104132  NM_001139444     TRAPPC3L
23   chr6  116492059      117104132  NM_001276460       FAM26F
24   chr6  116492059      117104132  NM_001322939          DSE
27   chr6  116492059      117104132     NM_002269        KPNA5
28   chr6  116492059      117104132     NM_003309       TSPYL1
29   chr6  116492059      117104132     NM_015952        RWDD1
30   chr6  116492059      117104132     NM_021648       TSPYL4
31   chr6  116492059      117104132     NM_145062        ZUFSP
32   chr6  116492059      117104132     NM_152729       NT5DC1
33   chr6  116492059      117104132     NM_153036       FAM26D
34   chr6  116492059      117104132     NM_153711       FAM26E,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  244980045      245128772  NM_001312871         COX20
2   chr1  244980045      245128772     NM_004501        HNRNPU
4   chr1  244980045      245128772     NR_111907  LOC101928068
5   chr1  244980045      245128772     NR_132782      SNORA100
6  chr14   61808072       61941570     NM_006255         PRKCH
7   chr7   64111387       64229243  NM_001282360        ZNF107
9   chr7   64111387       64229243     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28569409       28740063     NR_033351       GOLGA8F
1   chr15   28569409       28740063     NR_033353       GOLGA8G
2   chr15   28569409       28740063     NR_039734     MIR4509-3
4   chr16   16395506       16676375  NM_001282511        NPIPA8
5   chr16   16395506       16676375     NR_036141     MIR3180-1
6   chr16   16395506       16676375     NR_036142     MIR3180-2
7   chr16   16395506       16676375     NR_036447        PKD1P1
8   chr16   16395506       16676375     NR_103772  LOC100288162
9   chr16   16395506       16676375     NR_106766     MIR6511A1
10  chr16   16395506       16676375     NR_106971     MIR6511A4
11  chr16   16395506       16676375     NR_107060     MIR6770-2
12  chr16   16395506       16676375     NR_128713     MIR3670-4
13   chr7    3262707        3371203     NM_152744          SDK1
14   chr7   68563363       69117259  NM_001127231         AUTS2
16   chr7   68563363       69117259     NR_108105  LOC100507468
17   chr9   39003610       39238670     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21664747       22842168  NM_001001912      OR4E2
1   chr14   21664747       22842168  NM_001005465     OR10G3
2   chr14   21664747       22842168  NM_001005466     OR10G2
3   chr14   21664747       22842168  NM_001163380      RAB2B
4   chr14   21664747       22842168  NM_001170629       CHD8
5   chr14   21664747       22842168  NM_001303523       TOX4
6   chr14   21664747       22842168  NM_001317107      OR4E1
7   chr14   21664747       22842168     NM_007192    SUPT16H
8   chr14   21664747       22842168     NM_019852     METTL3
9   chr14   21664747       22842168     NM_020366    RPGRIP1
11  chr14   21664747       22842168     NM_031314     HNRNPC
13  chr14   21664747       22842168     NR_002916     SNORD8
14  chr14   21664747       22842168     NR_003029     SNORD9
15  chr14   21664747       22842168     NR_038970  LINC00641
17  chr14   21664747       22842168     NR_111966      SALL2
19   chr8    3980405        4103334     NM_033225      CSMD1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143621432      143749098     NR_104014     LINC01138
1  chr1  143621432      143749098     NR_106967       MIR6077
2  chr1  143621432      143749098     NR_111930  LOC100132057
3  chr8   48422176       48533820  NM_001080394         SPIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16403033       17128364  NM_001282511        NPIPA8
1   chr16   16403033       17128364     NR_036141     MIR3180-1
2   chr16   16403033       17128364     NR_036142     MIR3180-2
3   chr16   16403033       17128364     NR_036447        PKD1P1
4   chr16   16403033       17128364     NR_103772  LOC100288162
5   chr16   16403033       17128364     NR_106766     MIR6511A1
6   chr16   16403033       17128364     NR_106971     MIR6511A4
7   chr16   16403033       17128364     NR_107060     MIR6770-2
8    chr3   60046939       60147016  NM_001320899          FHIT
10   chr4    8588159        8699001  NM_001014447           CPZ
11   chr4    8588159        8699001     NM_080819         GPR78,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82409528       82520906  NM_001297704        ADGRL2
2   chr14   21902286       23252644  NM_001001912         OR4E2
3   chr14   21902286       23252644  NM_001005465        OR10G3
4   chr14   21902286       23252644  NM_001005466        OR10G2
5   chr14   21902286       23252644  NM_001126105        SLC7A7
7   chr14   21902286       23252644  NM_001163380         RAB2B
8   chr14   21902286       23252644  NM_001303523          TOX4
9   chr14   21902286       23252644  NM_001317107         OR4E1
10  chr14   21902286       23252644     NM_001344          DAD1
11  chr14   21902286       23252644     NM_005015         OXA1L
12  chr14   21902286       23252644     NM_019852        METTL3
13  chr14   21902286       23252644     NM_020920          CHD8
14  chr14   21902286       23252644     NM_022060         ABHD4
17  chr14   21902286       23252644     NR_111966         SALL2
19  chr15   54536904       55126309  NM_001080534        UNC13C
21   chr2  133608025      134029482     NM_207363        NCKAP5
22   chr2  133608025      134029482     NR_110294  LOC101928161
23   chr2  133608025      134029482     NR_135572  LOC101928185
24   chr6  162774958      162902333     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   72297622       72477764     NM_173808        NEGR1
1    chr1   72297622       72477764     NR_046218    NEGR1-IT1
2   chr17   14090329       14234361  NM_001007530       CDRT15
3   chr17   14090329       14234361     NM_001303        COX10
4   chr17   14090329       14234361     NM_006041     HS3ST3B1
5   chr17   14090329       14234361     NR_026880     MGC12916
6   chr20   14754909       14902200     NM_080676      MACROD2
7   chr20   14754909       14902200     NR_037841  MACROD2-AS1
9   chr22   18973140       19229601  NM_001184781        DGCR2
10  chr22   18973140       19229601  NM_001256534      SLC25A1
11  chr22   18973140       19229601     NM_001835       CLTCL1
12  chr22   18973140       19229601     NM_005315         GSC2
14  chr22   18973140       19229601     NM_022719       DGCR14
15  chr22   18973140       19229601     NM_053006        TSSK2
16  chr22   18973140       19229601     NR_002733        DGCR5
17  chr22   18973140       19229601     NR_024157       DGCR11
18  chr22   18973140       19229601     NR_024159        DGCR9
19  chr22   18973140       19229601     NR_026651       DGCR10
20  chr22   18973140       19229601     NR_103767    LINC01311,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143697771      143840234  NM_001123068       PPIAL4G
1    chr1  143697771      143840234     NR_104014     LINC01138
2    chr1  143697771      143840234     NR_111930  LOC100132057
3   chr14   21692635       21841370     NM_007192       SUPT16H
4   chr14   21692635       21841370     NM_020366       RPGRIP1
5   chr14   21692635       21841370     NM_031314        HNRNPC
6   chr15   28214636       28361244     NM_000275          OCA2
8   chr15   28214636       28361244     NM_004667         HERC2
9   chr15   28641338       28751610     NR_039734     MIR4509-3
11  chr19    1796485        1931578  NM_001130111       ABHD17A
12  chr19    1796485        1931578  NM_001178002        ATP8B3
13  chr19    1796485        1931578  NM_001329539        SCAMP4
14  chr19    1796485        1931578     NM_020695         REXO1
15  chr19    1796485        1931578     NM_031918         KLF16
16  chr19    1796485        1931578     NM_138422         ADAT3
18  chr19    1796485        1931578     NR_031730       MIR1909
19  chr19    1796485        1931578     NR_034114  LOC100288123,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  112400912      112502244     NM_172198         KCND3
1    chr1  112400912      112502244     NR_046619     KCND3-AS1
2   chr13   22579668       22835068     NR_103810     LINC00540
3   chr16    6738850        7003434  NM_001142334        RBFOX1
6   chr16   21477447       22028569  NM_001077180        METTL9
7   chr16   21477447       22028569  NM_001161683          OTOA
8   chr16   21477447       22028569  NM_001164579      C16orf52
10  chr16   21477447       22028569  NM_001310148        NPIPB4
11  chr16   21477447       22028569     NM_003366        UQCRC2
12  chr16   21477447       22028569     NM_005849         IGSF6
15  chr16   21477447       22028569     NM_173806         PDZD9
16  chr16   21477447       22028569     NR_002594      SLC7A5P2
17  chr16   21477447       22028569     NR_003370        RRN3P1
18  chr16   21477447       22028569     NR_027155        SMG1P3
19  chr16   21477447       22028569     NR_049833     MIR3680-2
20  chr16   21477447       22028569     NR_110930  LOC101927814
21  chr17   14026639       14361175  NM_001007530        CDRT15
22  chr17   14026639       14361175     NM_001303         COX10
23  chr17   14026639       14361175     NM_006041      HS3ST3B1
24  chr17   14026639       14361175     NR_026880      MGC12916
25   chr4    8959675        9275601  NM_001256852      USP17L10
26   chr4    8959675        9275601  NM_001256853      USP17L12
28   chr4    8959675        9275601  NM_001256854      USP17L11
31   chr4    8959675        9275601  NM_001256855      USP17L13
32   chr4    8959675        9275601  NM_001256857      USP17L17
33   chr4    8959675        9275601  NM_001256860      USP17L19
34   chr4    8959675        9275601  NM_001256861      USP17L20
35   chr4    8959675        9275601  NM_001256894      USP17L15
36   chr4    9082503        9347947  NM_001242326      USP17L25
41   chr4    9082503        9347947  NM_001256852      USP17L10
42   chr4    9082503        9347947  NM_001256853      USP17L12
44   chr4    9082503        9347947  NM_001256854      USP17L11
47   chr4    9082503        9347947  NM_001256855      USP17L13
48   chr4    9082503        9347947  NM_001256857      USP17L17
49   chr4    9082503        9347947  NM_001256860      USP17L19
50   chr4    9082503        9347947  NM_001256861      USP17L20
51   chr4    9082503        9347947  NM_001256894      USP17L15
52   chr9   28609281       28766292  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   53086443       53231572  NM_001098512         PRKG1
2   chr15   28684629       29126059  NM_001282468       GOLGA8M
3   chr15   28684629       29126059     NR_026589       WHAMMP2
4   chr15   28684629       29126059     NR_033351       GOLGA8F
5   chr15   28684629       29126059     NR_033353       GOLGA8G
6   chr15   28684629       29126059     NR_036443       HERC2P9
7   chr15   28684629       29126059     NR_036475  LOC100289656
8   chr15   28684629       29126059     NR_037599     PDCD6IPP2
9   chr15   28684629       29126059     NR_039734     MIR4509-3
10  chr15   28684629       29126059     NR_047567     GOLGA6L7P
11  chr15   30220738       30866040  NM_001282472       GOLGA8J
12  chr15   30220738       30866040  NM_001282484       GOLGA8R
13  chr15   30220738       30866040  NM_001301025          TJP1
14  chr15   30220738       30866040     NM_139320      CHRFAM7A
15  chr15   30220738       30866040     NR_026771  DKFZP434L187
16  chr15   30220738       30866040     NR_026858        ULK4P1
17  chr15   30220738       30866040     NR_026859        ULK4P3
18  chr15   30220738       30866040     NR_033933       GOLGA8T
19  chr22   20086216       20242924  NM_001190326         DGCR8
20  chr22   20086216       20242924  NM_001243537       CCDC188
21  chr22   20086216       20242924  NM_001278639        RANBP1
24  chr22   20086216       20242924     NM_013373        ZDHHC8
25  chr22   20086216       20242924     NM_022727        TRMT2A
26  chr22   20086216       20242924     NM_023004         RTN4R
27  chr22   20086216       20242924     NR_026919     LINC00896
28  chr22   20086216       20242924     NR_031618       MIR1286
29  chr22   20086216       20242924     NR_038460     LOC284865
30  chr22   20086216       20242924     NR_106874       MIR6816
31   chr7  124884929      124987854     NR_110183  LOC101928254
32   chr7  124884929      124987854     NR_110188  LOC101928283
33   chr8    5433927        6486205     NM_001147        ANGPT2
34   chr8    5433927        6486205  NM_001172574         MCPH1
37   chr8    5433927        6486205     NR_040040  LOC100287015
38   chr8    5433927        6486205     NR_107022       MIR8055
39   chr8    5433927        6486205     NR_125386     MCPH1-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143687408      143800598  NM_001123068       PPIAL4G
1   chr1  143687408      143800598     NR_104014     LINC01138
2   chr1  143687408      143800598     NR_111930  LOC100132057
3  chr15   28755778       28882015     NR_033351       GOLGA8F
4  chr15   28755778       28882015     NR_033353       GOLGA8G,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr2   56611818       56899714  NM_001080433   CCDC85A
1  chr20   14640473       14823531     NM_080676   MACROD2
2   chr4   56421188       56588343     NM_006681       NMU
3   chr4   56421188       56588343     NM_152401     PDCL2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   21321891       21457919  NM_001288713      NELL1
1   chr22   19017495       19282250  NM_001184781      DGCR2
2   chr22   19017495       19282250  NM_001256534    SLC25A1
3   chr22   19017495       19282250     NM_001835     CLTCL1
4   chr22   19017495       19282250     NM_005315       GSC2
6   chr22   19017495       19282250     NM_022719     DGCR14
7   chr22   19017495       19282250     NM_053006      TSSK2
8   chr22   19017495       19282250     NR_024157     DGCR11
9   chr22   19017495       19282250     NR_103767  LINC01311
10  chr22   19017495       19282250     NR_110533      DGCR5
11   chr9   30599834       31918346     NR_135134  LINC01243,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21780804       21923267  NM_001170629          CHD8
1   chr14   21780804       21923267     NM_007192       SUPT16H
2   chr14   21780804       21923267     NM_020366       RPGRIP1
4   chr14   21780804       21923267     NR_002916        SNORD8
5   chr14   21780804       21923267     NR_003029        SNORD9
6    chr3   60325163       60464049  NM_001320899          FHIT
7    chr6  136884709      137209259     NM_000288          PEX7
8    chr6  136884709      137209259     NM_005923        MAP3K5
9    chr6  136884709      137209259     NR_125858  LOC101928461
10   chr6  136884709      137209259     NR_134635  LOC101928429,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82458191       84985860  NM_001010971        SAMD13
3    chr1   82458191       84985860  NM_001242857        PRKACB
6    chr1   82458191       84985860  NM_001297704        ADGRL2
10   chr1   82458191       84985860  NM_001310156        SPATA1
12   chr1   82458191       84985860     NM_005274          GNG5
14   chr1   82458191       84985860     NM_021233       DNASE2B
15   chr1   82458191       84985860     NM_024686         TTLL7
16   chr1   82458191       84985860     NM_025065          RPF1
20   chr1   82458191       84985860     NR_003927           UOX
21   chr1   82458191       84985860     NR_110632     LINC01361
23   chr1   82458191       84985860     NR_119374  LOC101927560
24   chr1   82458191       84985860     NR_119375  LOC101927587
25   chr1  171286733      171515466     NM_002022          FMO4
26   chr1  171286733      171515466     NM_015172        PRRC2C
27   chr1  171286733      171515466     NR_002719        TOP1P1
28  chr10   67958844       68088906  NM_001127384        CTNNA3
30   chr2   84679649       84979507     NM_001370         DNAH6
31   chr2   84679649       84979507     NM_003849        SUCLG1
32   chr2  186577735      188133976  NM_001144999         ITGAV
34   chr2  186577735      188133976     NM_018471        ZC3H15
35   chr2  186577735      188133976     NM_173651         FSIP2
36   chr2  186577735      188133976     NM_177454       FAM171B
37   chr2  186577735      188133976     NM_182521        ZSWIM2
38   chr2  186577735      188133976     NR_110214  LOC101927196
41   chr2  186577735      188133976     NR_110218     LINC01473
42   chr2  186577735      188133976     NR_144453     FSIP2-AS1
44   chr7   75905559       76148109  NM_001102594          DTX2
46   chr7   75905559       76148109  NM_001110199         SRRM3
47   chr7   75905559       76148109  NM_001110354           ZP3
48   chr7   75905559       76148109     NM_001540         HSPB1
50   chr7   75905559       76148109     NM_012479         YWHAG
51   chr7   75905559       76148109     NM_030570         UPK3B
52   chr7   75905559       76148109     NM_080744         SSC4D
53   chr7   75905559       76148109     NR_003262        FDPSP2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11    7586824        7835819  NM_001256568      PPFIBP2
2   chr11    7586824        7835819  NM_001302826       CYB5R2
6   chr11    7586824        7835819     NM_153444        OR5P2
7   chr11    7586824        7835819     NM_198185        OVCH2
8   chr12   72706467       72829693     NM_013381        TRHDE
9   chr13   63175275       63299221     NR_047029    LINC00448
10  chr14   21818789       21938018  NM_001163380        RAB2B
11  chr14   21818789       21938018  NM_001170629         CHD8
12  chr14   21818789       21938018     NM_007192      SUPT16H
13  chr14   21818789       21938018     NM_020366      RPGRIP1
16  chr14   21818789       21938018     NR_002916       SNORD8
17  chr14   21818789       21938018     NR_003029       SNORD9
18  chr16   68621745       68755578  NM_001317195         CDH3
19   chr3    4128110        7568045  NM_001164675        SUMF1
20   chr3    4128110        7568045  NM_001168272        ITPR1
21   chr3    4128110        7568045  NM_001243723       SETMAR
23   chr3    4128110        7568045     NM_003670      BHLHE40
24   chr3    4128110        7568045     NM_014674        EDEM1
25   chr3    4128110        7568045     NM_018184        ARL8B
26   chr3    4128110        7568045     NM_181874         GRM7
27   chr3    4128110        7568045     NR_004428         EGOT
28   chr3    4128110        7568045     NR_037903  BHLHE40-AS1
29   chr3    4128110        7568045     NR_039953      MIR4790
30   chr3    4128110        7568045     NR_046606     GRM7-AS1
31   chr3    4128110        7568045     NR_108075    ITPR1-AS1
32   chr3    4128110        7568045     NR_110123     GRM7-AS3
35   chr3    4128110        7568045     NR_131906     GRM7-AS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67250634       67492761     NM_000695       ALDH3B2
1   chr11   67250634       67492761     NM_000852         GSTP1
3   chr11   67250634       67492761  NM_001166102        NDUFV1
4   chr11   67250634       67492761  NM_001243750         NUDT8
5   chr11   67250634       67492761  NM_001302959           AIP
6   chr11   67250634       67492761  NM_001318496         CABP2
8   chr11   67250634       67492761     NM_004910       PITPNM1
9   chr11   67250634       67492761     NM_005851       CDK2AP2
10  chr11   67250634       67492761     NM_005995         TBX10
11  chr11   67250634       67492761     NM_080658          ACY3
13  chr11   67250634       67492761     NR_033791        DOC2GP
15  chr11   67250634       67492761     NR_106810       MIR6752
16  chr11   67250634       67492761     NR_130935      C11orf72
17  chr16   16436802       16838301  NM_001282511        NPIPA8
18  chr16   16436802       16838301     NR_036447        PKD1P1
19  chr16   16436802       16838301     NR_106971     MIR6511A4
20  chr16   76580323       76683646  NM_001322181       CNTNAP4
22  chr16   76580323       76683646     NR_110934  LOC101928203
23   chr2  130608542      130714998     NR_026740     LOC389033
24   chr2  130608542      130714998     NR_110285  LOC101927924
25  chr20   14834254       14971182     NM_080676       MACROD2
26  chr20   14834254       14971182     NR_037841   MACROD2-AS1
28   chr7   82872030       83158198  NM_001178129        SEMA3E
30   chr7  132773773      134191131  NM_001037126         EXOC4
31   chr7  132773773      134191131  NM_001346142        AKR1B1
34   chr7  132773773      134191131     NM_032826       SLC35B4
35   chr7  132773773      134191131     NM_144648         LRGUK
36   chr7  132773773      134191131     NR_106749       MIR6133
37   chr7  132773773      134191131     NR_120513  LOC101928861
38   chr7  132773773      134191131     NR_133931  LOC105375512,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21668005       21860383  NM_001170629       CHD8
1   chr14   21668005       21860383     NM_007192    SUPT16H
2   chr14   21668005       21860383     NM_020366    RPGRIP1
4   chr14   21668005       21860383     NM_031314     HNRNPC
5   chr14   21668005       21860383     NR_003029     SNORD9
6   chr14   21668005       21860383     NR_038970  LINC00641
8    chr4   28396944       28855251     NR_036237    MIR4275
9    chr7   29533934       29739152  NM_001293069       CHN2
13   chr7   29533934       29739152  NM_001329997      PRR15
16   chr7   29533934       29739152     NR_024278  LOC646762
17   chr7   29533934       29739152     NR_027347    ZNRF2P2
18   chr7   29533934       29739152     NR_036482  DPY19L2P3
19   chr7   29533934       29739152     NR_039600   MIR550A3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   46971050       47292906  NM_001164213      LRCH1
2   chr13   46971050       47292906     NR_120426  LINC01198
3   chr14   21669245       22051913  NM_001005465     OR10G3
4   chr14   21669245       22051913  NM_001163380      RAB2B
5   chr14   21669245       22051913  NM_001170629       CHD8
6   chr14   21669245       22051913  NM_001303523       TOX4
7   chr14   21669245       22051913     NM_007192    SUPT16H
8   chr14   21669245       22051913     NM_019852     METTL3
9   chr14   21669245       22051913     NM_020366    RPGRIP1
11  chr14   21669245       22051913     NM_031314     HNRNPC
13  chr14   21669245       22051913     NR_002916     SNORD8
14  chr14   21669245       22051913     NR_003029     SNORD9
15  chr14   21669245       22051913     NR_038970  LINC00641
17  chr14   21669245       22051913     NR_111966      SALL2
19   chr4   69313482       69783159     NM_001075    UGT2B10
20   chr4   69313482       69783159     NM_001076    UGT2B15
21   chr4   69313482       69783159     NM_001077    UGT2B17
22   chr4   69313482       69783159     NM_014058  TMPRSS11E
23   chr7   16501317       16603916  NM_001195280     LRRC72
24   chr7   16501317       16603916     NM_015464    SOSTDC1
25   chr9   39039803       39185228     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  108012913      108190923  NM_001079874         VAV3
1    chr1  108012913      108190923  NM_001113228        NTNG1
5   chr13   41357481       41585904  NM_001145353         ELF1
6   chr13   41357481       41585904     NM_014252     SLC25A15
8   chr13   41357481       41585904     NR_003365      SUGT1P3
9   chr13   41357481       41585904     NR_030352       MIR621
10  chr13   41357481       41585904     NR_038259      TPTE2P5
11   chr2   25148032       25282559  NM_001198559      DNAJC27
12   chr2   25148032       25282559  NM_001319099        EFR3B
14   chr2   25148032       25282559     NR_034113  DNAJC27-AS1
15  chr22   19039308       19529014  NM_001035247        UFD1L
16  chr22   19039308       19529014  NM_001166242     C22orf39
17  chr22   19039308       19529014  NM_001178010        CDC45
18  chr22   19039308       19529014  NM_001184781        DGCR2
19  chr22   19039308       19529014  NM_001256534      SLC25A1
20  chr22   19039308       19529014  NM_001318151       MRPL40
22  chr22   19039308       19529014     NM_001835       CLTCL1
23  chr22   19039308       19529014     NM_003277        CLDN5
24  chr22   19039308       19529014     NM_003325         HIRA
26  chr22   19039308       19529014     NM_005315         GSC2
28  chr22   19039308       19529014     NM_022719       DGCR14
29  chr22   19039308       19529014     NM_053006        TSSK2
31  chr22   19039308       19529014     NR_103767    LINC01311
32   chr8    7113274        7219733  NM_001164457      ZNF705G
33   chr8    7113274        7219733  NM_001256873      USP17L1
34   chr8    7113274        7219733  NM_001256874      USP17L4
35   chr8    7113274        7219733     NR_003668   DEFB109P1B
36   chr8    7113274        7219733     NR_027000    LINC00965
39   chr8    7113274        7219733     NR_027423       FAM66B,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1  224711798      224884719  NM_001322302        CNIH3
4  chr20   14838569       14986636     NM_080676      MACROD2
5  chr20   14838569       14986636     NR_037841  MACROD2-AS1
7   chr7  110445258      110550687  NM_001244606       IMMP2L,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0   chr1   97392706       97581324  NM_000110         DPYD
1   chr1   97392706       97581324  NR_046590     DPYD-AS1
2  chr13   90906609       91354950  NR_120414    LINC01049
3  chr20   14446226       14624119  NM_080676      MACROD2
4  chr20   14446226       14624119  NR_104193  MACROD2-IT1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   19874068       20020975  NM_001145442         POTEM
1  chr14   19874068       20020975     NR_073459       BMS1P18
2  chr14   19874068       20020975     NR_110505  LOC100508046
3  chr14   19874068       20020975     NR_110526       DUXAP10
4  chr14   19874068       20020975     NR_122111     LINC01296
6  chr14   19874068       20020975     NR_133911       BMS1P22,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   61872446       62174539  NM_001243084         HIF1A
1   chr14   61872446       62174539     NM_006255         PRKCH
3   chr14   61872446       62174539     NR_039985      FLJ22447
4   chr14   61872446       62174539     NR_047116     HIF1A-AS1
5   chr14   61872446       62174539     NR_110416  LOC101927780
7   chr15   20972207       21256750  NM_001277303        POTEB2
8   chr15   20972207       21256750     NM_207355        POTEB3
9   chr15   20972207       21256750     NR_028506         NF1P2
10  chr15   20972207       21256750     NR_036062     MIR3118-2
11  chr15   20972207       21256750     NR_040094     LINC01193
12  chr15   20972207       21256750     NR_049895     MIR5701-2
14  chr15   28809655       29007822  NM_001282468       GOLGA8M
15  chr15   28809655       29007822     NR_026589       WHAMMP2
16  chr15   28809655       29007822     NR_036443       HERC2P9
17  chr16   21808349       21965490  NM_001310148        NPIPB4
18  chr16   21808349       21965490     NM_003366        UQCRC2
19  chr16   21808349       21965490     NR_003370        RRN3P1
20   chr3     698135         814298     NR_110118     LINC01266
21   chr4     117382         219442  NM_001039127        ZNF718
24   chr4     117382         219442     NR_027481       ZNF876P,     chrom  cnv_start  cnv_terminate       tx_name        gene_name
0   chr11   60307760       60493128  NM_001278320           MS4A13
1   chr11   60307760       60493128  NM_001310141           MS4A18
2   chr11   60307760       60493128     NM_031457            MS4A8
3   chr11   60307760       60493128     NR_026946        LINC00301
4   chr14   21767012       21990317  NM_001163380            RAB2B
5   chr14   21767012       21990317  NM_001170629             CHD8
6   chr14   21767012       21990317  NM_001303523             TOX4
7   chr14   21767012       21990317     NM_007192          SUPT16H
8   chr14   21767012       21990317     NM_019852           METTL3
9   chr14   21767012       21990317     NM_020366          RPGRIP1
12  chr14   21767012       21990317     NR_002916           SNORD8
13  chr14   21767012       21990317     NR_003029           SNORD9
14  chr14   21767012       21990317     NR_111966            SALL2
16  chr14   47851752       47963182  NM_001113498            MDGA2
17  chr17    5550931        7174887     NM_000697           ALOX12
18  chr17    5550931        7174887  NM_001105520        C17orf100
19  chr17    5550931        7174887  NM_001128827             DLG4
20  chr17    5550931        7174887  NM_001143775          CTDNEP1
21  chr17    5550931        7174887  NM_001143838          SLC13A5
22  chr17    5550931        7174887     NM_001181            ASGR2
23  chr17    5550931        7174887  NM_001185022            CLDN7
24  chr17    5550931        7174887  NM_001195228           FAM64A
25  chr17    5550931        7174887  NM_001197216            ASGR1
26  chr17    5550931        7174887  NM_001270447           ACADVL
28  chr17    5550931        7174887  NM_001284517            PHF23
30  chr17    5550931        7174887  NM_001285402            AIPL1
35  chr17    5550931        7174887  NM_001330070          CLEC10A
36  chr17    5550931        7174887     NM_004422             DVL2
37  chr17    5550931        7174887     NM_007278          GABARAP
39  chr17    5550931        7174887     NM_014804         KIAA0753
40  chr17    5550931        7174887     NM_015253            WSCD1
42  chr17    5550931        7174887     NM_015362             ELP5
43  chr17    5550931        7174887     NM_016060            MED31
44  chr17    5550931        7174887     NM_031220          PITPNM3
45  chr17    5550931        7174887     NM_032731          TXNDC17
46  chr17    5550931        7174887     NM_053285            TEKT1
48  chr17    5550931        7174887     NM_153230           FBXO39
49  chr17    5550931        7174887     NM_153357         SLC16A11
50  chr17    5550931        7174887     NM_174893         C17orf49
51  chr17    5550931        7174887     NM_181844            BCL6B
52  chr17    5550931        7174887     NM_201566         SLC16A13
54  chr17    5550931        7174887     NR_002710         ALOX12P2
55  chr17    5550931        7174887     NR_029712           MIR195
56  chr17    5550931        7174887     NR_029896           MIR324
57  chr17    5550931        7174887     NR_030178           MIR497
58  chr17    5550931        7174887     NR_037716           RNASEK
59  chr17    5550931        7174887     NR_037717  RNASEK-C17orf49
60  chr17    5550931        7174887     NR_038310         MIR497HG
61  chr17    5550931        7174887     NR_039745        MIR4520-1
62  chr17    5550931        7174887     NR_039874        MIR4520-2
63  chr17    5550931        7174887     NR_040000        LOC339166
64  chr17    5550931        7174887     NR_040089       ALOX12-AS1
65  chr17    5550931        7174887     NR_045985         ALOX15P1
66  chr17    5550931        7174887     NR_046398             XAF1
68   chr9   44287019       44563926     NR_121564     LOC101927827
69   chr9   44287019       44563926     NR_126050     LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20680583       20785184  NM_001145004      GOLGA6L6
1   chr15   20680583       20785184     NR_027411      GOLGA8CP
2   chr15   20680583       20785184     NR_036432       HERC2P3
3   chr16   18094234       18893128  NM_001004060         NOMO2
4   chr16   18094234       18893128     NM_001019        RPS15A
5   chr16   18094234       18893128  NM_001282511        NPIPA8
6   chr16   18094234       18893128  NM_001313858       ARL6IP1
7   chr16   18094234       18893128     NM_015092          SMG1
9   chr16   18094234       18893128     NR_003569       ABCC6P1
10  chr16   18094234       18893128     NR_036140     MIR3179-1
11  chr16   18094234       18893128     NR_036142     MIR3180-2
12  chr16   18094234       18893128     NR_036144     MIR3180-3
13  chr16   18094234       18893128     NR_037442     MIR3670-1
14  chr16   18094234       18893128     NR_103772  LOC100288162
15  chr16   18094234       18893128     NR_106971     MIR6511A4
16  chr16   18094234       18893128     NR_107060     MIR6770-2
17   chr4  169210535      169316911  NM_001012967        DDX60L
19   chr4  169210535      169316911     NM_017631         DDX60
20   chr6  162599822      162988002     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12849603       13052995  NM_001009611       PRAMEF4
1    chr1   12849603       13052995  NM_001010889       PRAMEF6
2    chr1   12849603       13052995  NM_001010890       PRAMEF9
3    chr1   12849603       13052995  NM_001012276       PRAMEF8
4    chr1   12849603       13052995  NM_001013631      HNRNPCL1
5    chr1   12849603       13052995  NM_001099850      PRAMEF18
6    chr1   12849603       13052995  NM_001100631      PRAMEF22
7    chr1   12849603       13052995  NM_001146181      HNRNPCL3
8    chr1   12849603       13052995  NM_001146344      PRAMEF11
9    chr1   12849603       13052995  NM_001294139       PRAMEF1
10   chr1   12849603       13052995  NM_001302551      HNRNPCL4
11   chr1   12849603       13052995  NM_001306072      PRAMEF26
12   chr1   12849603       13052995  NM_001310134      PRAMEF25
14   chr1   12849603       13052995     NM_023014       PRAMEF2
15   chr1   87374982       90037187  NM_001008662         KYAT3
16   chr1   87374982       90037187  NM_001134476        LRRC8B
17   chr1   87374982       90037187  NM_001134492        HS2ST1
18   chr1   87374982       90037187  NM_001162536        RBMXL1
19   chr1   87374982       90037187  NM_001290053  LOC101927844
20   chr1   87374982       90037187  NM_001319179          GBP3
22   chr1   87374982       90037187  NM_001320708          PKN2
23   chr1   87374982       90037187     NM_001514         GTF2B
24   chr1   87374982       90037187     NM_002053          GBP1
25   chr1   87374982       90037187     NM_004120          GBP2
26   chr1   87374982       90037187     NM_004261       SELENOF
27   chr1   87374982       90037187     NM_006769          LMO4
30   chr1   87374982       90037187     NM_052941          GBP4
31   chr1   87374982       90037187     NM_052942          GBP5
32   chr1   87374982       90037187     NM_198460          GBP6
33   chr1   87374982       90037187     NM_207398          GBP7
34   chr1   87374982       90037187     NR_003133        GBP1P1
35   chr1   87374982       90037187     NR_026985     LINC01140
38   chr1   87374982       90037187     NR_038324     LINC01364
39   chr1   87374982       90037187     NR_077244     LOC729930
40   chr1   87374982       90037187     NR_110682      PKN2-AS1
41   chr1  142701502      144039291  NM_001123068       PPIAL4G
42   chr1  142701502      144039291  NM_001287385        FAM72C
43   chr1  142701502      144039291  NM_001345942        FAM72D
47   chr1  142701502      144039291     NR_046228   ANKRD20A12P
48   chr1  142701502      144039291     NR_104014     LINC01138
49   chr1  142701502      144039291     NR_106967       MIR6077
50   chr1  142701502      144039291     NR_110761  LOC102723769
51   chr1  142701502      144039291     NR_111930  LOC100132057
53  chr10   83931718       84125613  NM_001010848          NRG3
55  chr10   83931718       84125613     NR_120666      NRG3-AS1
56  chr14   21608786       21736677  NM_001004731        OR5AU1
57  chr14   21608786       21736677     NM_031314        HNRNPC
58  chr14   21608786       21736677     NR_038970     LINC00641
60  chr15   59986439       60317079     NM_012182         FOXB1
61  chr17   14047414       14451696  NM_001007530        CDRT15
62  chr17   14047414       14451696     NM_001303         COX10
63  chr17   14047414       14451696     NM_006041      HS3ST3B1
64  chr17   14047414       14451696     NR_026880      MGC12916
65   chr4  182025735      182335476     NR_033918     LINC00290
66   chr8   58166832       58327441     NR_026772     LINC00588
67   chr8   58166832       58327441     NR_038874     LOC286177
68   chr8   58166832       58327441     NR_125818  LOC101929488,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21792796       22058539  NM_001005465       OR10G3
1   chr14   21792796       22058539  NM_001163380        RAB2B
2   chr14   21792796       22058539  NM_001170629         CHD8
3   chr14   21792796       22058539  NM_001303523         TOX4
4   chr14   21792796       22058539     NM_007192      SUPT16H
5   chr14   21792796       22058539     NM_019852       METTL3
6   chr14   21792796       22058539     NM_020366      RPGRIP1
9   chr14   21792796       22058539     NR_002916       SNORD8
10  chr14   21792796       22058539     NR_003029       SNORD9
11  chr14   21792796       22058539     NR_111966        SALL2
13   chr9   11824694       13242052     NM_000550        TYRP1
14   chr9   11824694       13242052  NM_001261407         MPDZ
16   chr9   11824694       13242052     NM_203403      LURAP1L
17   chr9   11824694       13242052     NR_125775  LURAP1L-AS1
18   chr9   11824694       13242052     NR_132976     SNORD137,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21801076       21904262  NM_001170629      CHD8
1  chr14   21801076       21904262     NM_007192   SUPT16H
2  chr14   21801076       21904262     NM_020366   RPGRIP1
4  chr14   21801076       21904262     NR_002916    SNORD8
5  chr14   21801076       21904262     NR_003029    SNORD9
6   chr7    3281551        3693293     NM_152744      SDK1
7   chr8  100533403      100655600     NM_017890    VPS13B
8   chr8  100533403      100655600     NR_030329    MIR599
9   chr8  100533403      100655600     NR_030596    MIR875,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21749626       21870006  NM_001170629       CHD8
1   chr14   21749626       21870006     NM_007192    SUPT16H
2   chr14   21749626       21870006     NM_020366    RPGRIP1
4   chr14   21749626       21870006     NR_002916     SNORD8
5   chr14   21749626       21870006     NR_003029     SNORD9
6   chr19   33725588       33970484     NM_000285       PEPD
7   chr19   33725588       33970484  NM_001252296      CEBPG
8   chr19   33725588       33970484  NM_001285829      CEBPA
10  chr19   33725588       33970484     NR_026887  CEBPA-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16345846       16600321  NM_001004067         NOMO3
1   chr16   16345846       16600321  NM_001282511        NPIPA8
2   chr16   16345846       16600321     NR_036140     MIR3179-1
3   chr16   16345846       16600321     NR_036141     MIR3180-1
4   chr16   16345846       16600321     NR_036142     MIR3180-2
5   chr16   16345846       16600321     NR_036447        PKD1P1
6   chr16   16345846       16600321     NR_103772  LOC100288162
7   chr16   16345846       16600321     NR_106766     MIR6511A1
8   chr16   16345846       16600321     NR_106971     MIR6511A4
9   chr16   16345846       16600321     NR_107060     MIR6770-2
10  chr16   16345846       16600321     NR_128713     MIR3670-4
11   chr2   47024174       47283319  NM_001171506         MCFD2
14   chr2   47024174       47283319  NM_001288951         TTC7A
16   chr2   47024174       47283319     NR_024452     LINC01119
17   chr2   47024174       47283319     NR_034099     LINC01118
18   chr8    7915672        8192969  NM_001080826         PRAG1
19   chr8    7915672        8192969     NR_024361      FAM86B3P
22   chr8    7915672        8192969     NR_031689      MIR548I3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   40271177       40372880  NM_001258419     LRRC4C
2  chr16   18444523       18691414  NM_001004060      NOMO2
3  chr16   18444523       18691414     NR_003569    ABCC6P1
4  chr16   18444523       18691414     NR_036140  MIR3179-1
5  chr16   18444523       18691414     NR_036142  MIR3180-2
6  chr16   18444523       18691414     NR_036144  MIR3180-3
7  chr16   18444523       18691414     NR_037442  MIR3670-1
8  chr16   18444523       18691414     NR_107060  MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142459072      142781347     NR_046228   ANKRD20A12P
1   chr16   16339765       16517755  NM_001004067         NOMO3
2   chr16   16339765       16517755  NM_001282511        NPIPA8
3   chr16   16339765       16517755     NR_036140     MIR3179-1
4   chr16   16339765       16517755     NR_036141     MIR3180-1
5   chr16   16339765       16517755     NR_036142     MIR3180-2
6   chr16   16339765       16517755     NR_036447        PKD1P1
7   chr16   16339765       16517755     NR_103772  LOC100288162
8   chr16   16339765       16517755     NR_106766     MIR6511A1
9   chr16   16339765       16517755     NR_106971     MIR6511A4
10  chr16   16339765       16517755     NR_107060     MIR6770-2
11  chr16   16339765       16517755     NR_128713     MIR3670-4
12   chr6  140452859      140553766     NR_037441       MIR3668
13   chr9    9923204       10050870     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  102669910      102901689     NM_002422       MMP3
1   chr11  102669910      102901689     NM_002426      MMP12
2   chr11  102669910      102901689     NM_002427      MMP13
3   chr11  102669910      102901689     NR_038390     WTAPP1
4   chr14   21860224       22065230  NM_001005465     OR10G3
5   chr14   21860224       22065230  NM_001163380      RAB2B
6   chr14   21860224       22065230  NM_001170629       CHD8
7   chr14   21860224       22065230  NM_001303523       TOX4
8   chr14   21860224       22065230     NM_019852     METTL3
11  chr14   21860224       22065230     NR_002916     SNORD8
12  chr14   21860224       22065230     NR_003029     SNORD9
13  chr14   21860224       22065230     NR_111966      SALL2
15   chr4   69245638       69477689     NM_001077    UGT2B17
16   chr4   69245638       69477689     NM_014058  TMPRSS11E
17   chr7  133239923      133345352     NM_021807      EXOC4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152434615      152584920     NM_019060         CRCT1
1    chr1  152434615      152584920     NM_032563         LCE3D
2    chr1  152434615      152584920     NM_178434         LCE3C
3    chr1  152434615      152584920     NM_178435         LCE3E
4    chr1  152434615      152584920     NM_178438         LCE5A
5   chr10   88984347       89097927  NM_001099338        NUTM2A
6   chr10   88984347       89097927     NR_024397    NUTM2A-AS1
7   chr12   80970464       81094349  NM_001145026         PTPRQ
8   chr15   28717054       29045597  NM_001282468       GOLGA8M
9   chr15   28717054       29045597     NR_026589       WHAMMP2
10  chr15   28717054       29045597     NR_033351       GOLGA8F
11  chr15   28717054       29045597     NR_033353       GOLGA8G
12  chr15   28717054       29045597     NR_036443       HERC2P9
13  chr15   28717054       29045597     NR_036475  LOC100289656
14  chr15   28717054       29045597     NR_037599     PDCD6IPP2
15  chr15   28717054       29045597     NR_039734     MIR4509-3
16   chr2  110183685      110618308  NM_001037866         RGPD6
17   chr2  110183685      110618308  NM_001099289        SH3RF3
19   chr2  110183685      110618308  NM_001321504        SEPT10
21   chr2  110183685      110618308     NM_005054         RGPD5
22   chr2  110183685      110618308     NM_023016        SOWAHC
23   chr6  162322794      162526085     NM_013988         PARK2
24   chr6  162718859      162845849     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21766816       21930781  NM_001163380     RAB2B
1   chr14   21766816       21930781  NM_001170629      CHD8
2   chr14   21766816       21930781     NM_007192   SUPT16H
3   chr14   21766816       21930781     NM_020366   RPGRIP1
6   chr14   21766816       21930781     NR_002916    SNORD8
7   chr14   21766816       21930781     NR_003029    SNORD9
8   chr18   67749373       67853225  NM_001318520      RTTN
9    chr9   28208400       28957300  NM_001258282    LINGO2
11   chr9   28208400       28957300     NR_030597    MIR876
12   chr9   28208400       28957300     NR_030618    MIR873,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67177168       67280678  NM_001018070    CORO1B
1   chr11   67177168       67280678  NM_001078650   TMEM134
2   chr11   67177168       67280678  NM_001166222    CARNS1
3   chr11   67177168       67280678  NM_001256508  TBC1D10C
4   chr11   67177168       67280678  NM_001300895     CABP4
6   chr11   67177168       67280678  NM_001302959       AIP
7   chr11   67177168       67280678     NM_003952   RPS6KB2
9   chr11   67177168       67280678     NM_004910   PITPNM1
10  chr11   67177168       67280678     NM_005608   PTPRCAP
11  chr11   67177168       67280678     NM_005851   CDK2AP2
14  chr11   67177168       67280678     NM_206997    GPR152
17  chr11   67177168       67280678     NR_106810   MIR6752
18  chr14   21822296       21950028  NM_001163380     RAB2B
19  chr14   21822296       21950028  NM_001170629      CHD8
20  chr14   21822296       21950028  NM_001303523      TOX4
21  chr14   21822296       21950028     NM_007192   SUPT16H
24  chr14   21822296       21950028     NR_002916    SNORD8
25  chr14   21822296       21950028     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21464046       21598194     NR_002594      SLC7A5P2
1   chr16   21464046       21598194     NR_027155        SMG1P3
2   chr16   21464046       21598194     NR_049833     MIR3680-2
3   chr16   83041675       83165044  NM_001220488         CDH13
5    chr2  133728915      134101489     NM_207363        NCKAP5
6    chr2  133728915      134101489     NR_110294  LOC101928161
7    chr2  186085423      187641664  NM_001144999         ITGAV
9    chr2  186085423      187641664     NM_018471        ZC3H15
10   chr2  186085423      187641664     NM_173651         FSIP2
11   chr2  186085423      187641664     NM_177454       FAM171B
12   chr2  186085423      187641664     NR_110214  LOC101927196
15   chr2  186085423      187641664     NR_110218     LINC01473
16   chr2  186085423      187641664     NR_144453     FSIP2-AS1
18   chr4    3868492        4419614  NM_001040101          NSG1
19   chr4    3868492        4419614  NM_001145725          LYAR
20   chr4    3868492        4419614  NM_001297551       TMEM128
23   chr4    3868492        4419614     NM_145291        ZBTB49
24   chr4    3868492        4419614     NM_177998         OTOP1
25   chr4    3868492        4419614     NR_130741       FAM86EP
26   chr9   38971527       39104367     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0    chr1  143657445      144062541  NM_001123068         PPIAL4G
1    chr1  143657445      144062541  NM_001287385          FAM72C
2    chr1  143657445      144062541  NM_001345942          FAM72D
6    chr1  143657445      144062541     NR_104014       LINC01138
7    chr1  143657445      144062541     NR_106967         MIR6077
8    chr1  143657445      144062541     NR_111930    LOC100132057
10   chr6    4203186       11934347     NM_000129           F13A1
11   chr6    4203186       11934347  NM_001003699           RREB1
12   chr6    4203186       11934347  NM_001032280          TFAP2A
13   chr6    4203186       11934347  NM_001040274          SYCP2L
15   chr6    4203186       11934347  NM_001100829        TMEM170B
16   chr6    4203186       11934347  NM_001127711         TMEM14B
17   chr6    4203186       11934347  NM_001135575          SMIM13
18   chr6    4203186       11934347  NM_001135650          EEF1E1
19   chr6    4203186       11934347  NM_001142393           NEDD9
20   chr6    4203186       11934347  NM_001142541         SLC35B3
21   chr6    4203186       11934347  NM_001143948           ADTRP
22   chr6    4203186       11934347  NM_001143970            CDYL
24   chr6    4203186       11934347  NM_001145115         PPP1R3G
25   chr6    4203186       11934347  NM_001145549          TXNDC5
26   chr6    4203186       11934347  NM_001164840           LYRM4
27   chr6    4203186       11934347  NM_001165258         TMEM14C
29   chr6    4203186       11934347  NM_001170692           CAGE1
31   chr6    4203186       11934347  NM_001199322         BLOC1S5
33   chr6    4203186       11934347  NM_001278710            NRN1
35   chr6    4203186       11934347  NM_001286132           RPP40
38   chr6    4203186       11934347  NM_001318872           FARS2
39   chr6    4203186       11934347  NM_001319034             DSP
40   chr6    4203186       11934347     NM_001491           GCNT2
41   chr6    4203186       11934347     NM_001718            BMP6
..    ...        ...            ...           ...             ...
60   chr6    4203186       11934347     NM_207582        ERVFRD-1
61   chr6    4203186       11934347     NR_003703        SCARNA27
62   chr6    4203186       11934347     NR_004855            HULC
64   chr6    4203186       11934347     NR_026736         C6orf52
66   chr6    4203186       11934347     NR_026970        LY86-AS1
67   chr6    4203186       11934347     NR_027712        PIP5K1P1
68   chr6    4203186       11934347     NR_027793       LINC00518
69   chr6    4203186       11934347     NR_033910      TFAP2A-AS1
70   chr6    4203186       11934347     NR_037462         MIR3691
71   chr6    4203186       11934347     NR_037616  BLOC1S5-TXNDC5
72   chr6    4203186       11934347     NR_037618  EEF1E1-BLOC1S5
73   chr6    4203186       11934347     NR_038962      ELOVL2-AS1
75   chr6    4203186       11934347     NR_038979    LOC100506207
77   chr6    4203186       11934347     NR_049863         MIR5683
78   chr6    4203186       11934347     NR_049872         MIR5689
79   chr6    4203186       11934347     NR_106988       MIR7641-2
80   chr6    4203186       11934347     NR_107007         MIR7853
81   chr6    4203186       11934347     NR_110842    LOC101927950
82   chr6    4203186       11934347     NR_120448            SSR1
83   chr6    4203186       11934347     NR_122107        KU-MEL-3
84   chr6    4203186       11934347     NR_125846    LOC101927972
85   chr6    4203186       11934347     NR_125851    LOC101928191
86   chr6    4203186       11934347     NR_126015       LYRM4-AS1
89   chr6    4203186       11934347     NR_132993       MIR5689HG
93   chr9   95719020       95957124  NM_001083536            FGD3
94   chr9   95719020       95957124  NM_001282394            WNK2
96   chr9   95719020       95957124  NM_001287005           SUSD3
97   chr9   95719020       95957124     NM_004148           NINJ1
100  chr9   95719020       95957124     NR_121565    LOC101927954
101  chr9   95719020       95957124     NR_134468          CARD19

[67 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21733495       21884911  NM_001170629       CHD8
1   chr14   21733495       21884911     NM_007192    SUPT16H
2   chr14   21733495       21884911     NM_020366    RPGRIP1
4   chr14   21733495       21884911     NM_031314     HNRNPC
5   chr14   21733495       21884911     NR_002916     SNORD8
6   chr14   21733495       21884911     NR_003029     SNORD9
7   chr16   78960564       79365359     NM_016373       WWOX
8   chr19   47837436       48147071  NM_001009813      MEIS3
9   chr19   47837436       48147071  NM_001271749      C5AR2
11  chr19   47837436       48147071  NM_001277075     ZNF541
12  chr19   47837436       48147071  NM_001291296       KPTN
15  chr19   47837436       48147071     NM_014681      DHX34
16  chr19   47837436       48147071     NM_015063     SLC8A2
17  chr19   47837436       48147071     NM_015711    GLTSCR1
19  chr19   47837436       48147071     NR_038452   NAPA-AS1
20  chr19   47837436       48147071     NR_038457       NAPA
21   chr2  110144278      110496393  NM_001099289     SH3RF3
22   chr2  110144278      110496393  NM_001321504     SEPT10
24   chr2  110144278      110496393     NM_023016     SOWAHC
25   chr7    8694612        8828445     NM_152745      NXPH1
26   chr9   43090803       43194875  NM_001012419  ANKRD20A3
27   chr9   43090803       43194875  NM_001012421  ANKRD20A2
28   chr9   43090803       43194875     NR_027472  LOC642929,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14642945       15421993  NM_001033087      MACROD2
2  chr20   14642945       15421993     NR_037841  MACROD2-AS1
4   chr6  155434337      155573689  NM_001010927        TIAM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    6717042        6879031  NM_001004489        OR2AG1
1   chr11    6717042        6879031  NM_001004490        OR2AG2
2   chr11    6717042        6879031     NM_003696         OR6A2
3   chr11    6717042        6879031     NM_178168        OR10A5
4   chr11    6717042        6879031     NR_003945        GVINP1
5   chr16   16408288       16582261  NM_001282511        NPIPA8
6   chr16   16408288       16582261     NR_036447        PKD1P1
7   chr16   16408288       16582261     NR_103772  LOC100288162
8   chr16   16408288       16582261     NR_106766     MIR6511A1
9   chr16   16408288       16582261     NR_106971     MIR6511A4
10  chr16   16408288       16582261     NR_107060     MIR6770-2
11   chr3  163686705      163937441     NR_031665       MIR1263
12   chr4  136825950      136958826     NR_103763     LINC00613
13   chr7  110768258      110871807  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67628708       67778592  NM_001127384        CTNNA3
2   chr14   21768462       22079666  NM_001005465        OR10G3
3   chr14   21768462       22079666  NM_001163380         RAB2B
4   chr14   21768462       22079666  NM_001170629          CHD8
5   chr14   21768462       22079666  NM_001303523          TOX4
6   chr14   21768462       22079666     NM_007192       SUPT16H
7   chr14   21768462       22079666     NM_019852        METTL3
8   chr14   21768462       22079666     NM_020366       RPGRIP1
11  chr14   21768462       22079666     NR_002916        SNORD8
12  chr14   21768462       22079666     NR_003029        SNORD9
13  chr14   21768462       22079666     NR_111966         SALL2
15  chr20   14793898       14950426     NM_080676       MACROD2
16  chr20   14793898       14950426     NR_037841   MACROD2-AS1
18   chr7    6806416        7299202  NM_001099697      RSPH10B2
19   chr7    6806416        7299202     NM_020156       C1GALT1
20   chr7    6806416        7299202     NM_198097         CCZ1B
21   chr7    6806416        7299202     NR_034022  LOC100131257
22   chr7    6806416        7299202     NR_037454       MIR3683
23   chr7    6806416        7299202     NR_108073  LOC101927354,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   63462974       63719147  NM_001039469         MARK2
1   chr11   63462974       63719147  NM_001144936      C11orf95
2   chr11   63462974       63719147  NM_001265591          RTN3
3   chr11   63462974       63719147  NM_001300800         NAA40
6   chr11   63462974       63719147     NM_138471      C11orf84
7   chr11   63462974       63719147     NM_173587         RCOR2
8   chr14   21818767       22074940  NM_001005465        OR10G3
9   chr14   21818767       22074940  NM_001163380         RAB2B
10  chr14   21818767       22074940  NM_001170629          CHD8
11  chr14   21818767       22074940  NM_001303523          TOX4
12  chr14   21818767       22074940     NM_007192       SUPT16H
13  chr14   21818767       22074940     NM_019852        METTL3
14  chr14   21818767       22074940     NM_020366       RPGRIP1
17  chr14   21818767       22074940     NR_002916        SNORD8
18  chr14   21818767       22074940     NR_003029        SNORD9
19  chr14   21818767       22074940     NR_111966         SALL2
21   chr3  131320962      131448337  NM_001289112         CPNE4
24   chr5  117361166      118413444  NM_001290322         DMXL1
25   chr5  117361166      118413444  NM_001308081         DTWD2
27   chr5  117361166      118413444     NR_104609       HNCAT21
28   chr5  117361166      118413444     NR_104610        HRAT56
29   chr5  117361166      118413444     NR_104997  LOC102467224
30   chr5  117361166      118413444     NR_104998  LOC102467225
31   chr5  117361166      118413444     NR_128710     MIR1244-4
32   chr5  117361166      118413444     NR_134249  LOC105379143,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21668532       21865651  NM_001170629          CHD8
1   chr14   21668532       21865651     NM_007192       SUPT16H
2   chr14   21668532       21865651     NM_020366       RPGRIP1
4   chr14   21668532       21865651     NM_031314        HNRNPC
5   chr14   21668532       21865651     NR_002916        SNORD8
6   chr14   21668532       21865651     NR_003029        SNORD9
7   chr14   21668532       21865651     NR_038970     LINC00641
9   chr15   52800855       52930590  NM_001142495         MYO5A
10  chr15   52800855       52930590  NM_001286495       FAM214A
11  chr15   52800855       52930590  NM_001306191        ARPP19
16   chr7   64033076       64280033  NM_001160183        ZNF138
17   chr7   64033076       64280033  NM_001282360        ZNF107
18   chr7   64033076       64280033     NR_033245     LOC641746
20   chr7   64033076       64280033     NR_077227  LOC100128885
22   chr7   64033076       64280033     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245044918      245222928  NM_001143943        EFCAB2
3    chr1  245044918      245222928     NR_111907  LOC101928068
4   chr11    6655093        7081666  NM_001004460        OR10A2
5   chr11    6655093        7081666  NM_001004489        OR2AG1
6   chr11    6655093        7081666  NM_001004490        OR2AG2
7   chr11    6655093        7081666  NM_001004684         OR2D3
8   chr11    6655093        7081666     NM_003696         OR6A2
9   chr11    6655093        7081666     NM_003700         OR2D2
10  chr11    6655093        7081666     NM_003737         DCHS1
11  chr11    6655093        7081666     NM_013249        ZNF214
12  chr11    6655093        7081666     NM_013250        ZNF215
13  chr11    6655093        7081666     NM_022061        MRPL17
14  chr11    6655093        7081666     NM_176822        NLRP14
15  chr11    6655093        7081666     NM_178168        OR10A5
16  chr11    6655093        7081666     NM_207186        OR10A4
17  chr11    6655093        7081666     NR_003945        GVINP1
18  chr18   24588832       25009984  NM_001256316         CHST9
19  chr18   24588832       25009984     NR_134589  LOC105372038
20  chr18   35099400       35323292     NM_020180         CELF4
21  chr18   35099400       35323292     NR_036202       MIR4318
22  chr22   17231050       17824494  NM_001037814          GAB4
23  chr22   17231050       17824494  NM_001163079         CECR6
24  chr22   17231050       17824494  NM_001282227         CECR1
26  chr22   17231050       17824494  NM_001289905        IL17RA
27  chr22   17231050       17824494     NM_017829         CECR5
30  chr22   17231050       17824494     NM_175878          XKR3
32  chr22   17231050       17824494     NR_003607       HSFY1P1
33  chr22   17231050       17824494     NR_015352         CECR7
34  chr22   17231050       17824494     NR_024482     CECR5-AS1
35  chr22   17231050       17824494     NR_038398         CECR3
36  chr22   17231050       17824494     NR_103793  LOC100996342,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21864326       22015915  NM_001163380         RAB2B
1   chr14   21864326       22015915  NM_001170629          CHD8
2   chr14   21864326       22015915  NM_001303523          TOX4
3   chr14   21864326       22015915     NM_019852        METTL3
6   chr14   21864326       22015915     NR_002916        SNORD8
7   chr14   21864326       22015915     NR_111966         SALL2
9    chr7   10965205       11364781     NM_002489        NDUFA4
10   chr7   10965205       11364781     NM_014660         PHF14
12   chr7  124913535      125037291     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  111183176      112786094  NM_001008541          MXI1
1   chr10  111183176      112786094     NM_001121          ADD3
2   chr10  111183176      112786094  NM_001134363         RBM20
3   chr10  111183176      112786094  NM_001195306         BBIP1
5   chr10  111183176      112786094  NM_001199492         PDCD4
6   chr10  111183176      112786094  NM_001269039         SHOC2
9   chr10  111183176      112786094  NM_001324128       XPNPEP1
12  chr10  111183176      112786094     NM_004419         DUSP5
13  chr10  111183176      112786094     NM_005445          SMC3
14  chr10  111183176      112786094     NM_005871        SMNDC1
17  chr10  111183176      112786094     NR_026715      RPL13AP6
18  chr10  111183176      112786094     NR_026932     PDCD4-AS1
19  chr10  111183176      112786094     NR_038943      ADD3-AS1
20  chr10  111183176      112786094     NR_039828       MIR4680
21  chr15   28575248       30245894  NM_001130414         APBA2
22  chr15   28575248       30245894  NM_001282468       GOLGA8M
23  chr15   28575248       30245894  NM_001301025          TJP1
26  chr15   28575248       30245894     NM_015307      FAM189A1
27  chr15   28575248       30245894     NM_138704        NSMCE3
28  chr15   28575248       30245894     NR_026589       WHAMMP2
29  chr15   28575248       30245894     NR_033351       GOLGA8F
31  chr15   28575248       30245894     NR_033353       GOLGA8G
33  chr15   28575248       30245894     NR_036443       HERC2P9
34  chr15   28575248       30245894     NR_036475  LOC100289656
35  chr15   28575248       30245894     NR_037599     PDCD6IPP2
36  chr15   28575248       30245894     NR_039734     MIR4509-3
38  chr15   28575248       30245894     NR_047567     GOLGA6L7P
39  chr15   28575248       30245894     NR_135221  LOC100130111
40   chr4  169246829      169377475  NM_001012967        DDX60L
42   chr7    8589135        9338035     NM_152745         NXPH1
43   chr7   64084375       64238953  NM_001282360        ZNF107
45   chr7   64084375       64238953     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144679735      145760894  NM_001002810       PDE4DIP
3    chr1  144679735      145760894  NM_001012758        NUDT17
4    chr1  144679735      145760894  NM_001039888      ANKRD34A
5    chr1  144679735      145760894  NM_001184795        PEX11B
10   chr1  144679735      145760894  NM_001201325         PDZK1
11   chr1  144679735      145760894  NM_001277444         NBPF9
12   chr1  144679735      145760894  NM_001278267        NBPF20
13   chr1  144679735      145760894  NM_001280799       ANKRD35
14   chr1  144679735      145760894  NM_001302371        NBPF10
15   chr1  144679735      145760894  NM_001303040        ITGA10
16   chr1  144679735      145760894  NM_001303456        POLR3C
17   chr1  144679735      145760894  NM_001313972         TXNIP
19   chr1  144679735      145760894     NM_004892        SEC22B
20   chr1  144679735      145760894     NM_005105         RBM8A
21   chr1  144679735      145760894     NM_006099         PIAS3
24   chr1  144679735      145760894     NM_007053         CD160
25   chr1  144679735      145760894     NM_014455        RNF115
27   chr1  144679735      145760894     NM_032305       POLR3GL
28   chr1  144679735      145760894     NM_145277          HFE2
29   chr1  144679735      145760894     NM_153713         LIX1L
30   chr1  144679735      145760894     NM_203458      NOTCH2NL
31   chr1  144679735      145760894     NR_002328        GNRHR2
33   chr1  144679735      145760894     NR_102405         NBPF8
36   chr1  144679735      145760894     NR_104217       NBPF25P
37   chr1  144679735      145760894     NR_106794       MIR6736
38   chr1  144679735      145760894     NR_125967  LOC101928979
39  chr12  128582750      128711887     NR_104647  LOC100996679
40  chr12  128582750      128711887     NR_104648  LOC101927694
41  chr17   63590034       63696165  NM_001037325        CEP112
44   chr2   47050023       47525438  NM_001163561       C2orf61
45   chr2   47050023       47525438  NM_001171506         MCFD2
48   chr2   47050023       47525438  NM_001288951         TTC7A
50   chr2   47050023       47525438  NM_001305624         CALM2
54   chr2   47050023       47525438     NR_024452     LINC01119
55   chr2   47050023       47525438     NR_110207  LOC101927043
57  chr21   23162906       23272439     NR_109958     LINC01425
58   chr3  197174097      197351121     NM_203314          BDH1
60   chr3  197174097      197351121     NR_003266     LOC220729
61   chr7  110653812      110759985  NM_001099658         LRRN3
62   chr7  110653812      110759985  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  120558967      120839727     NM_003750         EIF3A
1   chr10  120558967      120839727     NM_199461        NANOS1
2   chr10  120558967      120839727     NR_002917       SNORA19
3   chr22   17264886       18337145  NM_001037814          GAB4
4   chr22   17264886       18337145  NM_001122731        MICAL3
5   chr22   17264886       18337145  NM_001163079         CECR6
6   chr22   17264886       18337145  NM_001244567           BID
9   chr22   17264886       18337145  NM_001270733       BCL2L13
10  chr22   17264886       18337145  NM_001282227         CECR1
12  chr22   17264886       18337145  NM_001288707  LOC101929372
13  chr22   17264886       18337145  NM_001289905        IL17RA
14  chr22   17264886       18337145  NM_001290046         CECR2
16  chr22   17264886       18337145  NM_001303484      SLC25A18
17  chr22   17264886       18337145     NM_001696      ATP6V1E1
20  chr22   17264886       18337145     NM_017829         CECR5
23  chr22   17264886       18337145     NM_175878          XKR3
25  chr22   17264886       18337145     NR_003607       HSFY1P1
26  chr22   17264886       18337145     NR_015352         CECR7
27  chr22   17264886       18337145     NR_024482     CECR5-AS1
28  chr22   17264886       18337145     NR_036168     MIR3198-1
29  chr22   17264886       18337145     NR_038398         CECR3
31  chr22   17264886       18337145     NR_103718     LINC00528
32  chr22   17264886       18337145     NR_103793  LOC100996342,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   28494086       28638646     NM_004667      HERC2
1   chr15   28494086       28638646     NR_033351    GOLGA8F
2   chr15   28494086       28638646     NR_033353    GOLGA8G
3   chr15   28589453       29016026  NM_001282468    GOLGA8M
4   chr15   28589453       29016026     NR_026589    WHAMMP2
5   chr15   28589453       29016026     NR_033351    GOLGA8F
7   chr15   28589453       29016026     NR_033353    GOLGA8G
9   chr15   28589453       29016026     NR_036443    HERC2P9
10  chr15   28589453       29016026     NR_039734  MIR4509-3
12  chr15   29751702       29868393     NM_015307   FAM189A1
13   chr9  116556597      116664459  NM_001318041     ZNF618,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21936240       22445286  NM_001001912         OR4E2
1   chr14   21936240       22445286  NM_001005465        OR10G3
2   chr14   21936240       22445286  NM_001005466        OR10G2
3   chr14   21936240       22445286  NM_001163380         RAB2B
4   chr14   21936240       22445286  NM_001303523          TOX4
5   chr14   21936240       22445286  NM_001317107         OR4E1
6   chr14   21936240       22445286     NM_019852        METTL3
8   chr14   21936240       22445286     NR_111966         SALL2
10  chr15   20697510       21039085  NM_001145004      GOLGA6L6
11  chr15   20697510       21039085     NR_027411      GOLGA8CP
12  chr15   20697510       21039085     NR_027992        NBEAP1
13  chr15   20697510       21039085     NR_036062     MIR3118-2
14  chr15   20697510       21039085     NR_036432       HERC2P3
15  chr16   21493045       21696993  NM_001077180        METTL9
16  chr16   21493045       21696993  NM_001161683          OTOA
18  chr16   21493045       21696993     NM_005849         IGSF6
20  chr16   21493045       21696993     NR_002594      SLC7A5P2
21  chr16   21493045       21696993     NR_027155        SMG1P3
22  chr16   21493045       21696993     NR_049833     MIR3680-2
23  chr16   21493045       21696993     NR_110930  LOC101927814
24  chr20   14875878       14983252     NM_080676       MACROD2
25  chr20   14875878       14983252     NR_037841   MACROD2-AS1
27   chr6  162756830      162908246     NM_013988         PARK2
28   chr9  119692322      120228146     NM_014010         ASTN2
29   chr9  119692322      120228146     NR_003708      SNORA70C,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   22135322       22337187     NR_015416     LOC727924
1   chr15   22135322       22337187     NR_028506         NF1P2
2   chr15   22135322       22337187     NR_110480  LOC101927079
4   chr15   22135322       22337187     NR_128721     MIR5701-3
5   chr20   14628927       14796290     NM_080676       MACROD2
6    chr6    4254349        6100743  NM_001143970          CDYL
8    chr6    4254349        6100743  NM_001145115       PPP1R3G
9    chr6    4254349        6100743  NM_001164840         LYRM4
10   chr6    4254349        6100743  NM_001278710          NRN1
12   chr6    4254349        6100743  NM_001286132         RPP40
14   chr6    4254349        6100743  NM_001318872         FARS2
20   chr6    4254349        6100743     NR_037462       MIR3691
21   chr6    4254349        6100743     NR_106988     MIR7641-2
22   chr6    4254349        6100743     NR_110842  LOC101927950
23   chr6    4254349        6100743     NR_122107      KU-MEL-3
24   chr6    4254349        6100743     NR_125846  LOC101927972
25   chr6    4254349        6100743     NR_126015     LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4195646        4476560  NM_001005161        OR52B4
1   chr11    4195646        4476560  NM_001005172        OR52K2
2   chr11    4195646        4476560     NM_003141        TRIM21
3   chr11    4195646        4476560     NR_047550  LOC100506082
4   chr13  113519882      114037144     NM_000131            F7
5   chr13  113519882      114037144     NM_000504           F10
6   chr13  113519882      114037144  NM_001008895         CUL4A
7   chr13  113519882      114037144  NM_001112732         MCF2L
8   chr13  113519882      114037144  NM_001127202         PCID2
11  chr13  113519882      114037144  NM_001286732         GRTP1
18  chr13  113519882      114037144     NM_003891          PROZ
19  chr13  113519882      114037144     NM_005561         LAMP1
20  chr13  113519882      114037144     NM_015205        ATP11A
21  chr13  113519882      114037144     NR_034002     MCF2L-AS1
22  chr13  113519882      114037144     NR_046541     GRTP1-AS1
23  chr13  113519882      114037144     NR_107042       MIR8075
24  chr13  113519882      114037144     NR_126424       F10-AS1
25  chr17   63487701       63957378  NM_001037325        CEP112
28  chr17   63487701       63957378     NM_004655         AXIN2
29  chr22   19044556       19329689  NM_001184781         DGCR2
30  chr22   19044556       19329689  NM_001256534       SLC25A1
31  chr22   19044556       19329689     NM_001835        CLTCL1
32  chr22   19044556       19329689     NM_003325          HIRA
33  chr22   19044556       19329689     NM_005315          GSC2
35  chr22   19044556       19329689     NM_022719        DGCR14
36  chr22   19044556       19329689     NM_053006         TSSK2
37  chr22   19044556       19329689     NR_103767     LINC01311
38   chr7     139837         339287  NM_001195127  WI2-2373I1.2
39   chr7     139837         339287     NM_020223        FAM20C
40   chr7     139837         339287     NR_108065  LOC100507642
41   chr7     139837         339287     NR_134324  LOC105375115
42   chr7     139837         339287     NR_134325  LOC102723672,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21939054       22093370  NM_001005465        OR10G3
1   chr14   21939054       22093370  NM_001163380         RAB2B
2   chr14   21939054       22093370  NM_001303523          TOX4
3   chr14   21939054       22093370     NM_019852        METTL3
5   chr14   21939054       22093370     NR_111966         SALL2
7   chr21   22386297       22515956     NM_004540         NCAM2
8    chr3  197198998      197329005     NM_203314          BDH1
10   chr9   41929562       42039694     NR_003670        FGF7P3
11   chr9   41929562       42039694     NR_015363         GLIDR
14   chr9   41929562       42039694     NR_126048  LOC102724238
15   chr9   41929562       42039694     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21823487       22116725  NM_001005465     OR10G3
1   chr14   21823487       22116725  NM_001005466     OR10G2
2   chr14   21823487       22116725  NM_001163380      RAB2B
3   chr14   21823487       22116725  NM_001170629       CHD8
4   chr14   21823487       22116725  NM_001303523       TOX4
5   chr14   21823487       22116725     NM_007192    SUPT16H
6   chr14   21823487       22116725     NM_019852     METTL3
9   chr14   21823487       22116725     NR_002916     SNORD8
10  chr14   21823487       22116725     NR_003029     SNORD9
11  chr14   21823487       22116725     NR_111966      SALL2
13  chr15   21000213       21372687  NM_001277303     POTEB2
14  chr15   21000213       21372687     NM_207355     POTEB3
15  chr15   21000213       21372687     NR_028506      NF1P2
16  chr15   21000213       21372687     NR_036062  MIR3118-2
17  chr15   21000213       21372687     NR_040094  LINC01193
18  chr15   21000213       21372687     NR_049895  MIR5701-2
20  chr15   28776586       28894835     NR_033351    GOLGA8F
21  chr15   28776586       28894835     NR_033353    GOLGA8G
22   chr4   69195008       69327009  NM_001031732     YTHDC1
23   chr4   69195008       69327009     NM_014058  TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21815733       22534890  NM_001001912         OR4E2
1   chr14   21815733       22534890  NM_001005465        OR10G3
2   chr14   21815733       22534890  NM_001005466        OR10G2
3   chr14   21815733       22534890  NM_001163380         RAB2B
4   chr14   21815733       22534890  NM_001170629          CHD8
5   chr14   21815733       22534890  NM_001303523          TOX4
6   chr14   21815733       22534890  NM_001317107         OR4E1
7   chr14   21815733       22534890     NM_007192       SUPT16H
8   chr14   21815733       22534890     NM_019852        METTL3
9   chr14   21815733       22534890     NM_020366       RPGRIP1
12  chr14   21815733       22534890     NR_002916        SNORD8
13  chr14   21815733       22534890     NR_003029        SNORD9
14  chr14   21815733       22534890     NR_111966         SALL2
16  chr14   47791711       48065433  NM_001113498         MDGA2
19  chr15   28741310       29065860  NM_001282468       GOLGA8M
20  chr15   28741310       29065860     NR_026589       WHAMMP2
21  chr15   28741310       29065860     NR_033351       GOLGA8F
22  chr15   28741310       29065860     NR_033353       GOLGA8G
23  chr15   28741310       29065860     NR_036443       HERC2P9
24  chr15   28741310       29065860     NR_036475  LOC100289656
25  chr15   28741310       29065860     NR_037599     PDCD6IPP2
26   chr5   23809287       24059875     NR_131245       C5orf17
27   chr7  124875897      124996277     NR_110183  LOC101928254
28   chr7  124875897      124996277     NR_110188  LOC101928283
29   chr8  110262833      110459952  NM_001128211        NUDCD1
30   chr8  110262833      110459952  NM_001193557          ENY2
32   chr8  110262833      110459952     NM_177531       PKHD1L1
33   chr8  111848685      111951027     NR_125417     LINC01608,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  143718349      143904464  NM_001123068    PPIAL4G
1   chr1  143718349      143904464  NM_001287385     FAM72C
2   chr1  143718349      143904464  NM_001345942     FAM72D
5   chr1  143718349      143904464     NR_104014  LINC01138
7  chr14   21682731       21825764     NM_007192    SUPT16H
8  chr14   21682731       21825764     NM_020366    RPGRIP1
9  chr14   21682731       21825764     NM_031314     HNRNPC,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152974147      153220810  NM_001010857         LELP1
1    chr1  152974147      153220810  NM_001014291        SPRR2G
2    chr1  152974147      153220810  NM_001014450        SPRR2F
3    chr1  152974147      153220810  NM_001017418        SPRR2B
4    chr1  152974147      153220810  NM_001024209        SPRR2E
5    chr1  152974147      153220810  NM_001195571          PRR9
6    chr1  152974147      153220810     NM_003125        SPRR1B
7    chr1  152974147      153220810     NM_005416         SPRR3
8    chr1  152974147      153220810     NM_005988        SPRR2A
9    chr1  152974147      153220810     NM_006945        SPRR2D
10   chr1  152974147      153220810     NR_003062        SPRR2C
11   chr1  152974147      153220810     NR_110685  LOC101928009
12  chr11   48271236       48450122  NM_001004702         OR4C3
13  chr11   48271236       48450122  NM_001004725         OR4S1
14  chr11   48271236       48450122  NM_001004726         OR4X1
15  chr11   48271236       48450122  NM_001005513        OR4C45
16  chr15   77809606       77938664  NM_001301186        LINGO1
26  chr15   77809606       77938664     NR_045123    LINGO1-AS1
27  chr15   77809606       77938664     NR_135692  LOC101929457
28  chr16   18255619       18470806  NM_001282511        NPIPA8
29  chr16   18255619       18470806     NR_103772  LOC100288162
30  chr16   18255619       18470806     NR_106971     MIR6511A4
31  chr16   29542737       29652782     NR_049833     MIR3680-2
32  chr16   29542737       29652782     NR_135305        SMG1P2
34  chr16   29493217       29856846  NM_001030288           SPN
35  chr16   29493217       29856846  NM_001256269         KIF22
37  chr16   29493217       29856846  NM_001256443         PRRT2
38  chr16   29493217       29856846  NM_001276275           MAZ
39  chr16   29493217       29856846  NM_001293204           MVP
40  chr16   29493217       29856846  NM_001318249          QPRT
44  chr16   29493217       29856846     NM_024516         PAGR1
45  chr16   29493217       29856846     NM_152338          ZG16
46  chr16   29493217       29856846     NM_175900      C16orf54
47  chr16   29493217       29856846     NR_049833     MIR3680-2
48  chr16   29493217       29856846     NR_135305        SMG1P2
50   chr7   80068888       80180473  NM_001102386         GNAT3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81454164       81580133  NM_001278495        NUTM2B
1   chr10   81454164       81580133     NR_120611    NUTM2B-AS1
4   chr15   36150627       36276172     NR_038251      DPH6-AS1
5   chr15   36150627       36276172     NR_039735       MIR4510
6   chr16   18274957       18568195  NM_001004060         NOMO2
7   chr16   18274957       18568195  NM_001282511        NPIPA8
8   chr16   18274957       18568195     NR_036140     MIR3179-1
9   chr16   18274957       18568195     NR_036142     MIR3180-2
10  chr16   18274957       18568195     NR_036144     MIR3180-3
11  chr16   18274957       18568195     NR_037442     MIR3670-1
12  chr16   18274957       18568195     NR_103772  LOC100288162
13  chr16   18274957       18568195     NR_106971     MIR6511A4
14  chr16   18274957       18568195     NR_107060     MIR6770-2
15   chr2   51286238       51689902     NR_135237     LOC730100
16   chr5   17742256       17894662     NR_134286     LOC646241
18   chr7   83094763       83222788  NM_001178129        SEMA3E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21530893       22977677  NM_001077180        METTL9
1   chr16   21530893       22977677  NM_001135865        NPIPB5
2   chr16   21530893       22977677  NM_001161683          OTOA
3   chr16   21530893       22977677  NM_001164579      C16orf52
4   chr16   21530893       22977677  NM_001258033        POLR3E
6   chr16   21530893       22977677  NM_001310148        NPIPB4
7   chr16   21530893       22977677     NM_001802          CDR2
8   chr16   21530893       22977677     NM_003366        UQCRC2
9   chr16   21530893       22977677     NM_005849         IGSF6
10  chr16   21530893       22977677     NM_006043        HS3ST2
11  chr16   21530893       22977677     NM_013302         EEF2K
14  chr16   21530893       22977677     NM_173615         VWA3A
15  chr16   21530893       22977677     NM_173806         PDZD9
16  chr16   21530893       22977677     NR_002594      SLC7A5P2
17  chr16   21530893       22977677     NR_003370        RRN3P1
18  chr16   21530893       22977677     NR_003676     LOC653786
19  chr16   21530893       22977677     NR_027154        SMG1P1
20  chr16   21530893       22977677     NR_027460        RRN3P3
21  chr16   21530893       22977677     NR_110930  LOC101927814
22  chr16   21530893       22977677     NR_136333       MFSD13B
23  chr20   14790446       14984111     NM_080676       MACROD2
24  chr20   14790446       14984111     NR_037841   MACROD2-AS1
26  chr22   18965317       19081809  NM_001184781         DGCR2
27  chr22   18965317       19081809     NR_002733         DGCR5
28  chr22   18965317       19081809     NR_024157        DGCR11
29  chr22   18965317       19081809     NR_024159         DGCR9
30  chr22   18965317       19081809     NR_026651        DGCR10,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   40262401       40390239  NM_001258419       LRRC4C
2   chr14   21922716       22118276  NM_001005465       OR10G3
3   chr14   21922716       22118276  NM_001005466       OR10G2
4   chr14   21922716       22118276  NM_001163380        RAB2B
5   chr14   21922716       22118276  NM_001303523         TOX4
6   chr14   21922716       22118276     NM_019852       METTL3
8   chr14   21922716       22118276     NR_111966        SALL2
10  chr20   14675681       16268311  NM_001033087      MACROD2
11  chr20   14675681       16268311     NM_024704       KIF16B
13  chr20   14675681       16268311     NR_037841  MACROD2-AS1
15  chr20   14675681       16268311     NR_130924    LOC613266,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   27029816       27143504     NM_002515      NOVA1
2   chr17   14055217       14380876  NM_001007530     CDRT15
3   chr17   14055217       14380876     NM_001303      COX10
4   chr17   14055217       14380876     NM_006041   HS3ST3B1
5   chr17   14055217       14380876     NR_026880   MGC12916
6   chr22   20076654       20252300  NM_001190326      DGCR8
7   chr22   20076654       20252300  NM_001243537    CCDC188
8   chr22   20076654       20252300  NM_001278639     RANBP1
11  chr22   20076654       20252300     NM_013373     ZDHHC8
12  chr22   20076654       20252300     NM_022727     TRMT2A
13  chr22   20076654       20252300     NM_023004      RTN4R
14  chr22   20076654       20252300     NR_026919  LINC00896
15  chr22   20076654       20252300     NR_031618    MIR1286
16  chr22   20076654       20252300     NR_038460  LOC284865
17  chr22   20076654       20252300     NR_106874    MIR6816
18   chr3    1945663        2185194     NM_175607      CNTN4
19   chr3    1945663        2185194     NR_046555  CNTN4-AS2
20   chr6  162711940      162812881     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  143658756      144237430  NM_001123068        PPIAL4G
1    chr1  143658756      144237430  NM_001278267         NBPF20
2    chr1  143658756      144237430  NM_001287385         FAM72C
3    chr1  143658756      144237430  NM_001345942         FAM72D
7    chr1  143658756      144237430     NR_104014      LINC01138
8    chr1  143658756      144237430     NR_106967        MIR6077
9    chr1  143658756      144237430     NR_111930   LOC100132057
11  chr13   25290043       25499883  NM_001184993          RNF17
12  chr13   25290043       25499883     NR_047594          CENPJ
13  chr13   40307458       40655321  NM_001145079           COG6
15  chr16   18344463       18533125  NM_001004060          NOMO2
16  chr16   18344463       18533125  NM_001282511         NPIPA8
17  chr16   18344463       18533125     NR_036140      MIR3179-1
18  chr16   18344463       18533125     NR_036142      MIR3180-2
19  chr16   18344463       18533125     NR_036144      MIR3180-3
20  chr16   18344463       18533125     NR_037442      MIR3670-1
21  chr16   18344463       18533125     NR_103772   LOC100288162
22  chr16   18344463       18533125     NR_106971      MIR6511A4
23  chr16   18344463       18533125     NR_107060      MIR6770-2
24  chr16   29474567       29576233  NM_001017390        SULT1A4
25  chr16   29474567       29576233     NR_002556      LOC388242
26  chr16   29474567       29576233     NR_037608  SLX1A-SULT1A3
27  chr16   29474567       29576233     NR_135305         SMG1P2
29  chr17   47879500       48045682  NM_001077503           TAC4
30  chr17   47879500       48045682  NM_001199158           KAT7
31  chr17   47879500       48045682  NM_001242791       FLJ45513
32  chr22   20146843       20320743     NM_023004          RTN4R
33  chr22   20146843       20320743     NM_033257         DGCR6L
34  chr22   20146843       20320743     NR_026919      LINC00896
35  chr22   20146843       20320743     NR_031618        MIR1286
36  chr22   20146843       20320743     NR_038460      LOC284865
37   chr6  162524364      162629037     NM_013988          PARK2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18338346       18600449  NM_001004060         NOMO2
1  chr16   18338346       18600449  NM_001282511        NPIPA8
2  chr16   18338346       18600449     NR_003569       ABCC6P1
3  chr16   18338346       18600449     NR_036140     MIR3179-1
4  chr16   18338346       18600449     NR_036142     MIR3180-2
5  chr16   18338346       18600449     NR_036144     MIR3180-3
6  chr16   18338346       18600449     NR_037442     MIR3670-1
7  chr16   18338346       18600449     NR_103772  LOC100288162
8  chr16   18338346       18600449     NR_106971     MIR6511A4
9  chr16   18338346       18600449     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143075125      143386329     NR_110761  LOC102723769
1    chr1  143513539      143888769  NM_001123068       PPIAL4G
2    chr1  143513539      143888769     NR_104014     LINC01138
3    chr1  143513539      143888769     NR_106967       MIR6077
4    chr1  143513539      143888769     NR_111930  LOC100132057
5   chr11   95888064       95988338     NM_032427         MAML2
6   chr12   41668271       41980078  NM_001164595        PDZRN4
8   chr14   21865019       21995193  NM_001163380         RAB2B
9   chr14   21865019       21995193  NM_001170629          CHD8
10  chr14   21865019       21995193  NM_001303523          TOX4
11  chr14   21865019       21995193     NM_019852        METTL3
14  chr14   21865019       21995193     NR_002916        SNORD8
15  chr14   21865019       21995193     NR_111966         SALL2
17   chr4    8964529       10340926     NM_000798          DRD5
18   chr4    8964529       10340926  NM_001001290        SLC2A9
19   chr4    8964529       10340926  NM_001040448       DEFB131
20   chr4    8964529       10340926  NM_001242326      USP17L25
28   chr4    8964529       10340926  NM_001256852      USP17L10
29   chr4    8964529       10340926  NM_001256853      USP17L12
31   chr4    8964529       10340926  NM_001256854      USP17L11
34   chr4    8964529       10340926  NM_001256855      USP17L13
35   chr4    8964529       10340926  NM_001256857      USP17L17
36   chr4    8964529       10340926  NM_001256860      USP17L19
37   chr4    8964529       10340926  NM_001256861      USP17L20
38   chr4    8964529       10340926  NM_001256894      USP17L15
39   chr4    8964529       10340926     NM_005112          WDR1
41   chr4    8964529       10340926     NR_027279      USP17L6P
42   chr4    8964529       10340926     NR_031688      MIR548I2
43   chr4    8964529       10340926     NR_036090       MIR3138
44   chr4    8964529       10340926     NR_046416      USP17L9P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102425073      102548544     NR_110211         OLFM3
1   chr13   25261707       25375160  NM_001184993         RNF17
2   chr13   25261707       25375160  NM_001185085        ATP12A
3   chr14   21887715       22157018  NM_001001912         OR4E2
4   chr14   21887715       22157018  NM_001005465        OR10G3
5   chr14   21887715       22157018  NM_001005466        OR10G2
6   chr14   21887715       22157018  NM_001163380         RAB2B
7   chr14   21887715       22157018  NM_001170629          CHD8
8   chr14   21887715       22157018  NM_001303523          TOX4
9   chr14   21887715       22157018  NM_001317107         OR4E1
10  chr14   21887715       22157018     NM_019852        METTL3
13  chr14   21887715       22157018     NR_111966         SALL2
15  chr14   45464722       45584210  NM_001308120       FAM179B
16  chr14   45464722       45584210     NM_017922        PRPF39
17  chr14   45464722       45584210     NR_003691      SNORD127
18  chr15   20626997       20740354  NM_001145004      GOLGA6L6
19  chr15   20626997       20740354     NR_036432       HERC2P3
20  chr17     134394         252842  NM_001190411        RPH3AL
21  chr17     134394         252842     NR_040011  LOC100506388
22   chr3   60348977       60559898  NM_001320899          FHIT
23   chr8    6960458        7190407  NM_001256873       USP17L1
24   chr8    6960458        7190407     NR_003668    DEFB109P1B
25   chr8    6960458        7190407     NR_027000     LINC00965
28   chr8    6960458        7190407     NR_027423        FAM66B
29   chr9   11857713       13460631     NM_000550         TYRP1
30   chr9   11857713       13460631  NM_001261407          MPDZ
32   chr9   11857713       13460631     NM_203403       LURAP1L
33   chr9   11857713       13460631     NR_033863      FLJ41200
34   chr9   11857713       13460631     NR_125775   LURAP1L-AS1
35   chr9   11857713       13460631     NR_132976      SNORD137,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21778673       21883346  NM_001170629          CHD8
1   chr14   21778673       21883346     NM_007192       SUPT16H
2   chr14   21778673       21883346     NM_020366       RPGRIP1
4   chr14   21778673       21883346     NR_002916        SNORD8
5   chr14   21778673       21883346     NR_003029        SNORD9
6   chr17   78108387       78363356     NM_000199          SGSH
7   chr17   78108387       78363356  NM_001166349      SLC26A11
8   chr17   78108387       78363356  NM_001256071        RNF213
9   chr17   78108387       78363356  NM_001257970        CARD14
10  chr17   78108387       78363356     NM_014740        EIF4A3
14  chr17   78108387       78363356     NR_029376  LOC100294362
16   chr2  110058871      110183257  NM_001099289        SH3RF3
17   chr4   71407282       71544255     NM_016519          AMBN
18   chr4   71407282       71544255     NM_031889          ENAM
19   chr4   71407282       71544255     NM_144646        JCHAIN
20   chr5   99844633       99949084     NM_198507       FAM174A
21   chr7  143751547      143917684  NM_001001659        OR2A14
22   chr7  143751547      143917684  NM_001003702      ARHGEF35
23   chr7  143751547      143917684  NM_001004135        OR2A12
24   chr7  143751547      143917684  NM_001004488        OR2A25
25   chr7  143751547      143917684  NM_001005480         OR2A2
26   chr7  143751547      143917684     NM_198495        CTAGE4
27   chr7  143751547      143917684     NR_126022  LOC101928605
28   chr7  143751547      143917684     NR_126023     OR2A1-AS1
29   chr8   87962081       89310394     NM_005941         MMP16
30   chr8   87962081       89310394     NM_152418       DCAF4L2
31   chr8   87962081       89310394     NM_173538         CNBD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21938895       22079395  NM_001005465        OR10G3
1   chr14   21938895       22079395  NM_001163380         RAB2B
2   chr14   21938895       22079395  NM_001303523          TOX4
3   chr14   21938895       22079395     NM_019852        METTL3
5   chr14   21938895       22079395     NR_111966         SALL2
7   chr14   26963489       27318066     NM_002515         NOVA1
9   chr14   26963489       27318066     NR_110033  LOC101927062
10  chr14   26963489       27318066     NR_110556  LOC102724890
11   chr8   50609886       50901033  NM_001287813         SNTG1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21894946       22320826  NM_001001912     OR4E2
1   chr14   21894946       22320826  NM_001005465    OR10G3
2   chr14   21894946       22320826  NM_001005466    OR10G2
3   chr14   21894946       22320826  NM_001163380     RAB2B
4   chr14   21894946       22320826  NM_001170629      CHD8
5   chr14   21894946       22320826  NM_001303523      TOX4
6   chr14   21894946       22320826  NM_001317107     OR4E1
7   chr14   21894946       22320826     NM_019852    METTL3
10  chr14   21894946       22320826     NR_111966     SALL2
12  chr16   14732826       14948727  NM_001277323    NPIPA3
14  chr16   14732826       14948727  NM_001277324    NPIPA2
16  chr16   14732826       14948727     NM_014287     NOMO1
17  chr16   14732826       14948727     NM_016561      BFAR
18  chr16   14732826       14948727     NR_023387   ABCC6P2
19  chr16   14732826       14948727     NR_133651   PLA2G10
20   chr6  128590866      128751978  NM_001291982     PTPRK
22   chr6  162215273      162315295     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   61890565       61992755     NM_006255         PRKCH
1   chr15   28561748       30087447  NM_001130414         APBA2
2   chr15   28561748       30087447  NM_001282468       GOLGA8M
3   chr15   28561748       30087447  NM_001301025          TJP1
6   chr15   28561748       30087447     NM_004667         HERC2
7   chr15   28561748       30087447     NM_015307      FAM189A1
8   chr15   28561748       30087447     NM_138704        NSMCE3
9   chr15   28561748       30087447     NR_026589       WHAMMP2
10  chr15   28561748       30087447     NR_033351       GOLGA8F
12  chr15   28561748       30087447     NR_033353       GOLGA8G
14  chr15   28561748       30087447     NR_036443       HERC2P9
15  chr15   28561748       30087447     NR_036475  LOC100289656
16  chr15   28561748       30087447     NR_037599     PDCD6IPP2
17  chr15   28561748       30087447     NR_039734     MIR4509-3
19  chr15   28561748       30087447     NR_047567     GOLGA6L7P
20  chr15   28561748       30087447     NR_135221  LOC100130111
21  chr21   23081830       23230610     NR_038872     LINC00317
22  chr21   23081830       23230610     NR_109958     LINC01425
23   chr4      59848         181592  NM_001039127        ZNF718
24   chr4      59848         181592  NM_001286052        ZNF595
29   chr8    7879624        8060541     NR_031689      MIR548I3,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr10  100702053      101052523  NM_001166244         HPSE2
1    chr14   21554322       22093216  NM_001004731        OR5AU1
2    chr14   21554322       22093216  NM_001005465        OR10G3
3    chr14   21554322       22093216  NM_001101672        ZNF219
5    chr14   21554322       22093216  NM_001146683       TMEM253
6    chr14   21554322       22093216  NM_001163380         RAB2B
7    chr14   21554322       22093216  NM_001170629          CHD8
8    chr14   21554322       22093216  NM_001278529      ARHGEF40
9    chr14   21554322       22093216  NM_001303523          TOX4
10   chr14   21554322       22093216     NM_007192       SUPT16H
12   chr14   21554322       22093216     NM_019852        METTL3
13   chr14   21554322       22093216     NM_020366       RPGRIP1
15   chr14   21554322       22093216     NM_031314        HNRNPC
17   chr14   21554322       22093216     NR_002916        SNORD8
18   chr14   21554322       22093216     NR_003029        SNORD9
19   chr14   21554322       22093216     NR_038970     LINC00641
21   chr14   21554322       22093216     NR_111966         SALL2
23    chr7   29449530       37180691     NM_000823         GHRHR
24    chr7   29449530       37180691  NM_001002009        NT5C3A
25    chr7   29449530       37180691  NM_001039459         ELMO1
26    chr7   29449530       37180691  NM_001077653         TBX20
27    chr7   29449530       37180691  NM_001080529         WIPF3
28    chr7   29449530       37180691  NM_001100425      KIAA0895
29    chr7   29449530       37180691  NM_001130710          LSM5
30    chr7   29449530       37180691  NM_001145123       PPP1R17
31    chr7   29449530       37180691  NM_001145513         SCRN1
35    chr7   29449530       37180691  NM_001177506          AOAH
36    chr7   29449530       37180691  NM_001191056         PDE1C
39    chr7   29449530       37180691  NM_001197026       PLEKHA8
41    chr7   29449530       37180691  NM_001199219          INMT
..     ...        ...            ...           ...           ...
102   chr7   29449530       37180691     NR_027347       ZNRF2P2
103   chr7   29449530       37180691     NR_031604       MIR1200
105   chr7   29449530       37180691     NR_036482     DPY19L2P3
106   chr7   29449530       37180691     NR_036501     LINC00997
107   chr7   29449530       37180691     NR_036680     DPY19L1P1
108   chr7   29449530       37180691     NR_037513      MIR550B1
109   chr7   29449530       37180691     NR_037514      MIR550B2
110   chr7   29449530       37180691     NR_037598  INMT-FAM188B
112   chr7   29449530       37180691     NR_038454  LOC100130673
113   chr7   29449530       37180691     NR_038864     LOC401324
114   chr7   29449530       37180691     NR_038889     LOC401320
115   chr7   29449530       37180691     NR_039600      MIR550A3
116   chr7   29449530       37180691     NR_046764      AOAH-IT1
118   chr7   29449530       37180691     NR_104120     ELMO1-AS1
119   chr7   29449530       37180691     NR_108081     LINC01176
120   chr7   29449530       37180691     NR_108082  LOC100506725
121   chr7   29449530       37180691     NR_108089  LOC101928618
122   chr7   29449530       37180691     NR_120511     SEPT7-AS1
123   chr7   29449530       37180691     NR_132360     DPY19L1P2
124   chr7   29449530       37180691     NR_136255  LOC101930085
125   chr7   29449530       37180691     NR_136267  LOC105375218
126   chr7   64042063       64215046  NM_001282360        ZNF107
127   chr7   64042063       64215046     NR_033245     LOC641746
128   chr7   64042063       64215046     NR_077227  LOC100128885
130   chr7   64042063       64215046     NR_106898       MIR6839
131   chr7   64107309       64381286  NM_001160183        ZNF138
132   chr7   64107309       64381286  NM_001282360        ZNF107
133   chr7   64107309       64381286     NM_021148        ZNF273
136   chr7   64107309       64381286     NR_106898       MIR6839
137   chr7  110402205      110718283  NM_001244606        IMMP2L

[92 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67998468       68170233  NM_001127384    CTNNA3
2   chr14   21890684       22089447  NM_001005465    OR10G3
3   chr14   21890684       22089447  NM_001163380     RAB2B
4   chr14   21890684       22089447  NM_001170629      CHD8
5   chr14   21890684       22089447  NM_001303523      TOX4
6   chr14   21890684       22089447     NM_019852    METTL3
9   chr14   21890684       22089447     NR_111966     SALL2
11  chr15   24400081       24987833     NM_018958     NPAP1
12  chr15   24400081       24987833     NR_026646     PWRN1
13  chr15   24400081       24987833     NR_026647     PWRN2
14  chr15   24400081       24987833     NR_130780     PWRN3
15   chr2  110139666      110375160  NM_001099289    SH3RF3
16   chr2  110139666      110375160  NM_001321504    SEPT10
18   chr2  110139666      110375160     NM_023016    SOWAHC,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   71566586       71870271  NM_001277227          LGR5
1   chr15   28551489       28811956     NM_004667         HERC2
2   chr15   28551489       28811956     NR_033351       GOLGA8F
4   chr15   28551489       28811956     NR_033353       GOLGA8G
6   chr15   28551489       28811956     NR_039734     MIR4509-3
8   chr22   17195576       17692267  NM_001037814          GAB4
9   chr22   17195576       17692267  NM_001163079         CECR6
10  chr22   17195576       17692267  NM_001282227         CECR1
12  chr22   17195576       17692267  NM_001289905        IL17RA
13  chr22   17195576       17692267     NM_017829         CECR5
16  chr22   17195576       17692267     NM_175878          XKR3
18  chr22   17195576       17692267     NR_003607       HSFY1P1
19  chr22   17195576       17692267     NR_015352         CECR7
20  chr22   17195576       17692267     NR_024482     CECR5-AS1
21  chr22   17195576       17692267     NR_103793  LOC100996342
22  chr22   17195576       17692267     NR_134584  LOC101929350
23   chr4   69303481       69420962     NM_001077       UGT2B17
24   chr4   69303481       69420962     NM_014058     TMPRSS11E
25   chr6  162602828      162756838     NM_013988         PARK2
26   chr7    6798346        6936029  NM_001099697      RSPH10B2
27   chr7    6798346        6936029     NM_198097         CCZ1B
28   chr8    8167318        8453111  NM_001080826         PRAG1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143087659      144323716  NM_001123068       PPIAL4G
1    chr1  143087659      144323716  NM_001278267        NBPF20
2    chr1  143087659      144323716  NM_001287385        FAM72C
3    chr1  143087659      144323716  NM_001345942        FAM72D
7    chr1  143087659      144323716     NR_024511     LINC00623
9    chr1  143087659      144323716     NR_104014     LINC01138
10   chr1  143087659      144323716     NR_106967       MIR6077
11   chr1  143087659      144323716     NR_110761  LOC102723769
12   chr1  143087659      144323716     NR_111930  LOC100132057
13   chr1  143087659      144323716     NR_111953     LINC00869
15  chr16   18111515       19632944  NM_001004060         NOMO2
16  chr16   18111515       19632944     NM_001019        RPS15A
17  chr16   18111515       19632944  NM_001105249          TMC5
18  chr16   18111515       19632944  NM_001160364          TMC7
19  chr16   18111515       19632944  NM_001190983          COQ7
20  chr16   18111515       19632944  NM_001199022        CCP110
21  chr16   18111515       19632944  NM_001256720       CLEC19A
23  chr16   18111515       19632944  NM_001282511        NPIPA8
25  chr16   18111515       19632944  NM_001308157         SYT17
27  chr16   18111515       19632944  NM_001313858       ARL6IP1
28  chr16   18111515       19632944  NM_001324066          GDE1
31  chr16   18111515       19632944     NM_015092          SMG1
36  chr16   18111515       19632944     NM_020314      C16orf62
38  chr16   18111515       19632944     NR_003569       ABCC6P1
39  chr16   18111515       19632944     NR_028028      ITPRIPL2
40  chr16   18111515       19632944     NR_036140     MIR3179-1
41  chr16   18111515       19632944     NR_036142     MIR3180-2
42  chr16   18111515       19632944     NR_036144     MIR3180-3
43  chr16   18111515       19632944     NR_037442     MIR3670-1
44  chr16   18111515       19632944     NR_103772  LOC100288162
45  chr16   18111515       19632944     NR_106971     MIR6511A4
46  chr16   18111515       19632944     NR_107060     MIR6770-2
47  chr16   18111515       19632944     NR_119379  LOC102723385
49   chr2   50793990       50933637  NM_001330082         NRXN1
50   chr2   50793990       50933637     NR_130470       MIR8485
51   chr2   50769510       51953325  NM_001330079         NRXN1
54   chr2   50769510       51953325     NR_130470       MIR8485
55   chr2   50769510       51953325     NR_135237     LOC730100
56   chr6   90200570       90379456  NM_001242809        ANKRD6
59   chr6   90200570       90379456     NM_014611          MDN1
60   chr6   90200570       90379456     NM_020466         LYRM2
62   chr6   90200570       90379456     NR_111915  LOC101929057
63   chr7  110751068      111023406  NM_001099658         LRRN3
64   chr7  110751068      111023406  NM_001244606        IMMP2L
66   chr7  123404164      124049466  NM_001136002      TMEM229A
67   chr7  123404164      124049466  NM_001174044         SPAM1
70   chr7  123404164      124049466     NM_012269         HYAL4
71   chr7  123404164      124049466     NR_002731        HYALP1
72   chr7  123404164      124049466     NR_110180  LOC101928211
73   chr7  123404164      124049466     NR_125730        RNU6-2
74   chr7  123404164      124049466     NR_133947  LOC105375483,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56478694       56732792  NM_001142770        PCDH15
3   chr11   81820296       82087287     NR_120571     MIR4300HG
4   chr16   16379334       16494545  NM_001004067         NOMO3
5   chr16   16379334       16494545  NM_001282511        NPIPA8
6   chr16   16379334       16494545     NR_036140     MIR3179-1
7   chr16   16379334       16494545     NR_036141     MIR3180-1
8   chr16   16379334       16494545     NR_036142     MIR3180-2
9   chr16   16379334       16494545     NR_036447        PKD1P1
10  chr16   16379334       16494545     NR_103772  LOC100288162
11  chr16   16379334       16494545     NR_106766     MIR6511A1
12  chr16   16379334       16494545     NR_106971     MIR6511A4
13  chr16   16379334       16494545     NR_107060     MIR6770-2
14  chr16   16379334       16494545     NR_128713     MIR3670-4
15   chr9   28698238       28897023  NM_001258282        LINGO2
17   chr9   28698238       28897023     NR_030597        MIR876
18   chr9   28698238       28897023     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145127346      145372242  NM_001277444         NBPF9
1    chr1  145127346      145372242  NM_001278267        NBPF20
2    chr1  145127346      145372242  NM_001302371        NBPF10
3    chr1  145127346      145372242     NM_203458      NOTCH2NL
4    chr1  145127346      145372242     NR_104217       NBPF25P
5   chr14   79512620       79657327     NM_004796         NRXN3
7   chr15   28642868       28748927     NR_039734     MIR4509-3
9    chr2  186239071      188358200  NM_001144999         ITGAV
10   chr2  186239071      188358200  NM_001271751        CALCRL
11   chr2  186239071      188358200  NM_001318941          TFPI
14   chr2  186239071      188358200     NM_018471        ZC3H15
15   chr2  186239071      188358200     NM_173651         FSIP2
16   chr2  186239071      188358200     NM_177454       FAM171B
17   chr2  186239071      188358200     NM_182521        ZSWIM2
18   chr2  186239071      188358200     NR_110214  LOC101927196
21   chr2  186239071      188358200     NR_110218     LINC01473
22   chr2  186239071      188358200     NR_144453     FSIP2-AS1
24   chr4   35232128       36390569  NM_001136536         DTHD1
26   chr4   35232128       36390569     NM_015230         ARAP2
27   chr4   35232128       36390569     NR_122079     LOC439933
29   chr4   68954738       71192074     NM_000200          HTN3
30   chr4   68954738       71192074  NM_001009181         STATH
31   chr4   68954738       71192074  NM_001031732        YTHDC1
32   chr4   68954738       71192074     NM_001073       UGT2B11
33   chr4   68954738       71192074     NM_001075       UGT2B10
35   chr4   68954738       71192074     NM_001076       UGT2B15
36   chr4   68954738       71192074     NM_001077       UGT2B17
37   chr4   68954738       71192074  NM_001105677        UGT2A2
38   chr4   68954738       71192074  NM_001207004       UGT2B28
39   chr4   68954738       71192074  NM_001252274        UGT2A1
40   chr4   68954738       71192074  NM_001297615        UGT2B4
43   chr4   68954738       71192074  NM_001302770          CSN2
44   chr4   68954738       71192074  NM_001330719        UGT2B7
45   chr4   68954738       71192074     NM_001890        CSN1S1
46   chr4   68954738       71192074     NM_002159          HTN1
47   chr4   68954738       71192074     NM_005212          CSN3
48   chr4   68954738       71192074     NM_005420       SULT1E1
49   chr4   68954738       71192074     NM_014058     TMPRSS11E
50   chr4   68954738       71192074     NM_014465       SULT1B1
51   chr4   68954738       71192074     NM_017855          ODAM
52   chr4   68954738       71192074     NM_024743        UGT2A3
53   chr4   68954738       71192074     NM_152997         FDCSP
54   chr4   68954738       71192074     NM_182502     TMPRSS11B
55   chr4   68954738       71192074     NM_207407     TMPRSS11F
56   chr4   68954738       71192074     NM_214711         PRR27
57   chr4   68954738       71192074     NR_003720      CSN1S2AP
58   chr4   68954738       71192074     NR_015446        FTLP10
59   chr4   68954738       71192074     NR_033311      CSN1S2BP
60   chr4   68954738       71192074     NR_104048   TMPRSS11BNL
61   chr4   68954738       71192074     NR_136191  LOC105377267,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   14992413       15145424  NM_001270767         NTAN1
1   chr16   14992413       15145424  NM_001285445        PDXDC1
7   chr16   14992413       15145424     NM_006985        NPIPA1
8   chr16   14992413       15145424     NR_036140     MIR3179-1
9   chr16   14992413       15145424     NR_036141     MIR3180-1
10  chr16   14992413       15145424     NR_036142     MIR3180-2
11  chr16   14992413       15145424     NR_103772  LOC100288162
12  chr16   14992413       15145424     NR_106970     MIR6511A3
13  chr16   14992413       15145424     NR_107060     MIR6770-2
14  chr16   14992413       15145424     NR_128713     MIR3670-4
15   chr3  105551573      105667547  NM_001321786          CBLB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28783121       29502278  NM_001130414         APBA2
1   chr15   28783121       29502278  NM_001282468       GOLGA8M
2   chr15   28783121       29502278     NM_015307      FAM189A1
3   chr15   28783121       29502278     NR_026589       WHAMMP2
4   chr15   28783121       29502278     NR_036443       HERC2P9
5   chr15   28783121       29502278     NR_036475  LOC100289656
6   chr15   28783121       29502278     NR_037599     PDCD6IPP2
7   chr15   28783121       29502278     NR_047567     GOLGA6L7P
8    chr4    9028461        9300900  NM_001256852      USP17L10
9    chr4    9028461        9300900  NM_001256853      USP17L12
11   chr4    9028461        9300900  NM_001256854      USP17L11
14   chr4    9028461        9300900  NM_001256855      USP17L13
15   chr4    9028461        9300900  NM_001256857      USP17L17
16   chr4    9028461        9300900  NM_001256860      USP17L19
17   chr4    9028461        9300900  NM_001256861      USP17L20
18   chr4    9028461        9300900  NM_001256894      USP17L15
19   chr4    9035162       10385520     NM_000798          DRD5
20   chr4    9035162       10385520  NM_001001290        SLC2A9
21   chr4    9035162       10385520  NM_001040448       DEFB131
22   chr4    9035162       10385520  NM_001242326      USP17L25
30   chr4    9035162       10385520  NM_001256852      USP17L10
31   chr4    9035162       10385520  NM_001256853      USP17L12
33   chr4    9035162       10385520  NM_001256854      USP17L11
36   chr4    9035162       10385520  NM_001256855      USP17L13
37   chr4    9035162       10385520  NM_001256857      USP17L17
38   chr4    9035162       10385520  NM_001256860      USP17L19
39   chr4    9035162       10385520  NM_001256861      USP17L20
40   chr4    9035162       10385520  NM_001256894      USP17L15
41   chr4    9035162       10385520     NM_005112          WDR1
43   chr4    9035162       10385520     NR_027279      USP17L6P
44   chr4    9035162       10385520     NR_031688      MIR548I2
45   chr4    9035162       10385520     NR_036090       MIR3138
46   chr4    9035162       10385520     NR_046416      USP17L9P
47   chr7    5560486        6160689     NM_000535          PMS2
48   chr7    5560486        6160689  NM_001097622           OCM
49   chr7    5560486        6160689  NM_001099697      RSPH10B2
50   chr7    5560486        6160689     NM_001101          ACTB
51   chr7    5560486        6160689  NM_001271700       ANKRD61
53   chr7    5560486        6160689  NM_001326610         AIMP2
55   chr7    5560486        6160689     NM_003088         FSCN1
56   chr7    5560486        6160689     NM_014413       EIF2AK1
57   chr7    5560486        6160689     NM_015622          CCZ1
58   chr7    5560486        6160689     NM_032172         USP42
59   chr7    5560486        6160689     NM_207116        RNF216
60   chr7    5560486        6160689     NR_023382       ZNF815P
61   chr7    5560486        6160689     NR_046834    RNF216-IT1
62   chr7    5560486        6160689     NR_106934       MIR6874
63   chr7    5560486        6160689     NR_126168     LOC221946,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   47826832       47934778  NM_001113498         MDGA2
1   chr16   18146323       18685217  NM_001004060         NOMO2
2   chr16   18146323       18685217  NM_001282511        NPIPA8
3   chr16   18146323       18685217     NR_003569       ABCC6P1
4   chr16   18146323       18685217     NR_036140     MIR3179-1
5   chr16   18146323       18685217     NR_036142     MIR3180-2
6   chr16   18146323       18685217     NR_036144     MIR3180-3
7   chr16   18146323       18685217     NR_037442     MIR3670-1
8   chr16   18146323       18685217     NR_103772  LOC100288162
9   chr16   18146323       18685217     NR_106971     MIR6511A4
10  chr16   18146323       18685217     NR_107060     MIR6770-2
11   chr5  106795192      107123735     NM_001962         EFNA5,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr22   17171061       20698151     NM_000407         GP1BB
1    chr22   17171061       20698151     NM_000754          COMT
2    chr22   17171061       20698151  NM_001009939         SEPT5
3    chr22   17171061       20698151  NM_001035247         UFD1L
4    chr22   17171061       20698151  NM_001037814          GAB4
5    chr22   17171061       20698151  NM_001122731        MICAL3
6    chr22   17171061       20698151  NM_001127649         PEX26
10   chr22   17171061       20698151  NM_001163079         CECR6
11   chr22   17171061       20698151  NM_001166242      C22orf39
12   chr22   17171061       20698151  NM_001178010         CDC45
13   chr22   17171061       20698151  NM_001184781         DGCR2
14   chr22   17171061       20698151  NM_001190326         DGCR8
15   chr22   17171061       20698151  NM_001193414         TUBA8
16   chr22   17171061       20698151  NM_001195226         PRODH
18   chr22   17171061       20698151  NM_001242313      TMEM191B
19   chr22   17171061       20698151  NM_001243537       CCDC188
20   chr22   17171061       20698151  NM_001244567           BID
23   chr22   17171061       20698151  NM_001256534       SLC25A1
24   chr22   17171061       20698151  NM_001270733       BCL2L13
25   chr22   17171061       20698151  NM_001278639        RANBP1
28   chr22   17171061       20698151  NM_001282227         CECR1
30   chr22   17171061       20698151  NM_001282512        TXNRD2
31   chr22   17171061       20698151  NM_001283116        TANGO2
32   chr22   17171061       20698151  NM_001288707  LOC101929372
33   chr22   17171061       20698151  NM_001289905        IL17RA
34   chr22   17171061       20698151  NM_001290046         CECR2
36   chr22   17171061       20698151  NM_001303484      SLC25A18
37   chr22   17171061       20698151  NM_001318151        MRPL40
41   chr22   17171061       20698151     NM_001670         ARVCF
42   chr22   17171061       20698151     NM_001696      ATP6V1E1
..     ...        ...            ...           ...           ...
80   chr22   17171061       20698151     NR_024157        DGCR11
81   chr22   17171061       20698151     NR_024159         DGCR9
82   chr22   17171061       20698151     NR_024381     LINC00895
83   chr22   17171061       20698151     NR_024417      FLJ41941
84   chr22   17171061       20698151     NR_024482     CECR5-AS1
85   chr22   17171061       20698151     NR_026651        DGCR10
86   chr22   17171061       20698151     NR_026919     LINC00896
87   chr22   17171061       20698151     NR_029706        MIR185
88   chr22   17171061       20698151     NR_030378        MIR648
89   chr22   17171061       20698151     NR_031618       MIR1286
90   chr22   17171061       20698151     NR_031706       MIR1306
91   chr22   17171061       20698151     NR_036168     MIR3198-1
92   chr22   17171061       20698151     NR_037412       MIR3618
93   chr22   17171061       20698151     NR_037611   SEPT5-GP1BB
95   chr22   17171061       20698151     NR_038398         CECR3
96   chr22   17171061       20698151     NR_038460     LOC284865
97   chr22   17171061       20698151     NR_039918       MIR4761
99   chr22   17171061       20698151     NR_103718     LINC00528
100  chr22   17171061       20698151     NR_103767     LINC01311
101  chr22   17171061       20698151     NR_103793  LOC100996342
102  chr22   17171061       20698151     NR_106874       MIR6816
104  chr22   17171061       20698151     NR_134584  LOC101929350
105  chr22   17171061       20698151     NR_135922  LOC102725072
106  chr22   17171061       20698151     NR_136560       FAM230A
107  chr22   17171061       20698151     NR_136561     LOC642643
108  chr22   17171061       20698151     NR_136569     LOC729461
109  chr22   17171061       20698151     NR_136570  LOC100996415
110  chr22   17171061       20698151     NR_136571  LOC100996432
111  chr22   17171061       20698151     NR_136572  LOC101927859
112  chr22   17171061       20698151     NR_136574  LOC105379550

[83 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143616821      143849633  NM_001123068       PPIAL4G
1    chr1  143616821      143849633     NR_104014     LINC01138
2    chr1  143616821      143849633     NR_106967       MIR6077
3    chr1  143616821      143849633     NR_111930  LOC100132057
4   chr16   71126335       71407249  NM_001099642         CMTR2
5   chr16   71126335       71407249  NM_001198542         HYDIN
11  chr16   71126335       71407249     NM_001740         CALB2
14   chr3  111594541      111787513  NM_001008273        TAGLN3
15   chr3  111594541      111787513  NM_001134437        PHLDB2
17   chr3  111594541      111787513  NM_001272069        ABHD10
20   chr3  111594541      111787513     NR_026734       TMPRSS7
21   chr8   13678638       14377348     NM_139167          SGCZ,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28706763       29342192  NM_001130414         APBA2
1   chr15   28706763       29342192  NM_001282468       GOLGA8M
2   chr15   28706763       29342192     NR_026589       WHAMMP2
3   chr15   28706763       29342192     NR_033351       GOLGA8F
4   chr15   28706763       29342192     NR_033353       GOLGA8G
5   chr15   28706763       29342192     NR_036443       HERC2P9
6   chr15   28706763       29342192     NR_036475  LOC100289656
7   chr15   28706763       29342192     NR_037599     PDCD6IPP2
8   chr15   28706763       29342192     NR_039734     MIR4509-3
9   chr15   28706763       29342192     NR_047567     GOLGA6L7P
10   chr2  235229613      235432418  NM_001282431         ARL4C,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   83470764       83967801  NM_001142699      DLG2
4   chr14   21797932       22109245  NM_001005465    OR10G3
5   chr14   21797932       22109245  NM_001005466    OR10G2
6   chr14   21797932       22109245  NM_001163380     RAB2B
7   chr14   21797932       22109245  NM_001170629      CHD8
8   chr14   21797932       22109245  NM_001303523      TOX4
9   chr14   21797932       22109245     NM_007192   SUPT16H
10  chr14   21797932       22109245     NM_019852    METTL3
11  chr14   21797932       22109245     NM_020366   RPGRIP1
14  chr14   21797932       22109245     NR_002916    SNORD8
15  chr14   21797932       22109245     NR_003029    SNORD9
16  chr14   21797932       22109245     NR_111966     SALL2
18  chr14   21898408       22020520  NM_001163380     RAB2B
19  chr14   21898408       22020520  NM_001170629      CHD8
20  chr14   21898408       22020520  NM_001303523      TOX4
21  chr14   21898408       22020520     NM_019852    METTL3
24  chr14   21898408       22020520     NR_111966     SALL2
26  chr14   21926324       22208543  NM_001001912     OR4E2
27  chr14   21926324       22208543  NM_001005465    OR10G3
28  chr14   21926324       22208543  NM_001005466    OR10G2
29  chr14   21926324       22208543  NM_001163380     RAB2B
30  chr14   21926324       22208543  NM_001303523      TOX4
31  chr14   21926324       22208543  NM_001317107     OR4E1
32  chr14   21926324       22208543     NM_019852    METTL3
34  chr14   21926324       22208543     NR_111966     SALL2
36  chr14   75127952       75242190  NM_001039479     AREL1
37  chr14   75127952       75242190  NM_001318508      FCF1
39  chr14   75127952       75242190     NM_019589     YLPM1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18307603       18442130  NM_001282511        NPIPA8
1   chr16   18307603       18442130     NR_103772  LOC100288162
2   chr16   18307603       18442130     NR_106971     MIR6511A4
3   chr22   19897098       20117647     NM_000754          COMT
6   chr22   19897098       20117647  NM_001190326         DGCR8
7   chr22   19897098       20117647  NM_001278639        RANBP1
10  chr22   19897098       20117647  NM_001282512        TXNRD2
11  chr22   19897098       20117647  NM_001283116        TANGO2
14  chr22   19897098       20117647     NM_001670         ARVCF
17  chr22   19897098       20117647     NM_022727        TRMT2A
18  chr22   19897098       20117647     NR_029706        MIR185
19  chr22   19897098       20117647     NR_031706       MIR1306
20  chr22   19897098       20117647     NR_037412       MIR3618
21  chr22   19897098       20117647     NR_039918       MIR4761
22  chr22   19897098       20117647     NR_106874       MIR6816,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21817434       21930886  NM_001163380      RAB2B
1   chr14   21817434       21930886  NM_001170629       CHD8
2   chr14   21817434       21930886     NM_007192    SUPT16H
3   chr14   21817434       21930886     NM_020366    RPGRIP1
6   chr14   21817434       21930886     NR_002916     SNORD8
7   chr14   21817434       21930886     NR_003029     SNORD9
8   chr14   27003601       27107199     NM_002515      NOVA1
10  chr15  100086689      100198368  NM_001130928      MEF2A
12  chr18   64263162       64560822     NM_021153      CDH19
13   chr4  189214754      189470604     NR_033869  LINC01060
14   chr5   17649846       17883045     NR_134286  LOC646241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63364741       63504413     NR_047029     LINC00448
3    chr2  186307593      186786792     NM_173651         FSIP2
4    chr2  186307593      186786792     NR_110214  LOC101927196
7    chr2  186307593      186786792     NR_144453     FSIP2-AS1
9    chr7  110561960      110909730  NM_001099658         LRRN3
10   chr7  110561960      110909730  NM_001244606        IMMP2L
12   chr8    6605089        6752488     NM_005218         DEFB1
13   chr8    6605089        6752488     NM_018361        AGPAT5
14   chr8    6605089        6752488     NM_207411          XKR5
15   chr8    6605089        6752488     NR_045217    GS1-24F4.2
16   chr9    1240879        2201462  NM_001289396       SMARCA2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   57635386       58144048     NM_000075          CDK4
1   chr12   57635386       58144048  NM_001080156       ARHGAP9
3   chr12   57635386       58144048  NM_001111270      ARHGEF25
4   chr12   57635386       58144048  NM_001122772         AGAP2
5   chr12   57635386       58144048  NM_001146258       PIP4K2C
6   chr12   57635386       58144048  NM_001160045          GLI1
8   chr12   57635386       58144048  NM_001261412         DCTN2
9   chr12   57635386       58144048  NM_001261422           OS9
10  chr12   57635386       58144048  NM_001276468      B4GALNT1
12  chr12   57635386       58144048  NM_001286245          DTX3
13  chr12   57635386       58144048  NM_001286256         STAC3
15  chr12   57635386       58144048  NM_001330122        R3HDM2
17  chr12   57635386       58144048     NM_004083         DDIT3
18  chr12   57635386       58144048     NM_004984         KIF5A
19  chr12   57635386       58144048     NM_004990          MARS
20  chr12   57635386       58144048     NM_005538         INHBC
21  chr12   57635386       58144048     NM_005981       TSPAN31
24  chr12   57635386       58144048     NM_031479         INHBE
26  chr12   57635386       58144048     NM_052897          MBD6
27  chr12   57635386       58144048     NM_133489      SLC26A10
29  chr12   57635386       58144048     NR_027032     AGAP2-AS1
30  chr12   57635386       58144048     NR_030346        MIR616
31  chr12   57635386       58144048     NR_106816       MIR6758
32  chr12   57635386       58144048     NR_106817       MIR6759
33  chr12   57635386       58144048     NR_120450  LOC101927583
34  chr22   17221391       18539903  NM_001037814          GAB4
35  chr22   17221391       18539903  NM_001122731        MICAL3
37  chr22   17221391       18539903  NM_001163079         CECR6
38  chr22   17221391       18539903  NM_001244567           BID
41  chr22   17221391       18539903  NM_001270733       BCL2L13
42  chr22   17221391       18539903  NM_001282227         CECR1
44  chr22   17221391       18539903  NM_001288707  LOC101929372
45  chr22   17221391       18539903  NM_001289905        IL17RA
46  chr22   17221391       18539903  NM_001290046         CECR2
48  chr22   17221391       18539903  NM_001303484      SLC25A18
49  chr22   17221391       18539903     NM_001696      ATP6V1E1
52  chr22   17221391       18539903     NM_017829         CECR5
55  chr22   17221391       18539903     NM_175878          XKR3
57  chr22   17221391       18539903     NR_003607       HSFY1P1
58  chr22   17221391       18539903     NR_015352         CECR7
59  chr22   17221391       18539903     NR_024417      FLJ41941
60  chr22   17221391       18539903     NR_024482     CECR5-AS1
61  chr22   17221391       18539903     NR_030378        MIR648
62  chr22   17221391       18539903     NR_036168     MIR3198-1
63  chr22   17221391       18539903     NR_038398         CECR3
65  chr22   17221391       18539903     NR_103718     LINC00528
66  chr22   17221391       18539903     NR_103793  LOC100996342
67  chr22   17221391       18539903     NR_134584  LOC101929350
68   chr7   16539577       16786534  NM_001159767          BZW2
69   chr7   16539577       16786534  NM_001195280        LRRC72
70   chr7   16539577       16786534     NM_020319        ANKMY2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145273554      145387759  NM_001277444         NBPF9
1    chr1  145273554      145387759  NM_001278267        NBPF20
2    chr1  145273554      145387759  NM_001302371        NBPF10
3    chr1  145273554      145387759     NM_203458      NOTCH2NL
4    chr1  145273554      145387759     NR_104217       NBPF25P
5    chr1  145273554      145387759     NR_125967  LOC101928979
6   chr14   21872762       22331069  NM_001001912         OR4E2
7   chr14   21872762       22331069  NM_001005465        OR10G3
8   chr14   21872762       22331069  NM_001005466        OR10G2
9   chr14   21872762       22331069  NM_001163380         RAB2B
10  chr14   21872762       22331069  NM_001170629          CHD8
11  chr14   21872762       22331069  NM_001303523          TOX4
12  chr14   21872762       22331069  NM_001317107         OR4E1
13  chr14   21872762       22331069     NM_019852        METTL3
16  chr14   21872762       22331069     NR_111966         SALL2
18   chr7   80099301       80316065     NM_000072          CD36
21   chr7   80099301       80316065  NM_001102386         GNAT3
27   chr7  110528420      111013680  NM_001099658         LRRN3
28   chr7  110528420      111013680  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21819288       22039062  NM_001005465     OR10G3
1   chr14   21819288       22039062  NM_001163380      RAB2B
2   chr14   21819288       22039062  NM_001170629       CHD8
3   chr14   21819288       22039062  NM_001303523       TOX4
4   chr14   21819288       22039062     NM_007192    SUPT16H
5   chr14   21819288       22039062     NM_019852     METTL3
6   chr14   21819288       22039062     NM_020366    RPGRIP1
9   chr14   21819288       22039062     NR_002916     SNORD8
10  chr14   21819288       22039062     NR_003029     SNORD9
11  chr14   21819288       22039062     NR_111966      SALL2
13  chr19   33721791       33823521  NM_001285829      CEBPA
14  chr19   33721791       33823521     NR_026887  CEBPA-AS1
15   chr5   66171654       66590773  NM_001164664      MAST4
19   chr5   66171654       66590773     NM_005582      CD180
21   chr5   66171654       66590773     NR_111908  MAST4-AS1
22   chr7   82894636       83009767  NM_001178129     SEMA3E
24   chr9   39126230       39280240     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28540551       28811746     NM_004667         HERC2
1   chr15   28540551       28811746     NR_033351       GOLGA8F
3   chr15   28540551       28811746     NR_033353       GOLGA8G
5   chr15   28540551       28811746     NR_039734     MIR4509-3
7   chr15   28718589       29183543  NM_001282468       GOLGA8M
8   chr15   28718589       29183543     NR_026589       WHAMMP2
9   chr15   28718589       29183543     NR_033351       GOLGA8F
10  chr15   28718589       29183543     NR_033353       GOLGA8G
11  chr15   28718589       29183543     NR_036443       HERC2P9
12  chr15   28718589       29183543     NR_036475  LOC100289656
13  chr15   28718589       29183543     NR_037599     PDCD6IPP2
14  chr15   28718589       29183543     NR_039734     MIR4509-3
15  chr15   28718589       29183543     NR_047567     GOLGA6L7P
16  chr20   14693662       14845036     NM_080676       MACROD2
17   chr3  176626126      176787723  NM_001321193       TBL1XR1
19   chr6   92066054       92299428     NR_039786       MIR4643,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21862012       22072425  NM_001005465    OR10G3
1   chr14   21862012       22072425  NM_001163380     RAB2B
2   chr14   21862012       22072425  NM_001170629      CHD8
3   chr14   21862012       22072425  NM_001303523      TOX4
4   chr14   21862012       22072425     NM_019852    METTL3
7   chr14   21862012       22072425     NR_002916    SNORD8
8   chr14   21862012       22072425     NR_111966     SALL2
10   chr7   64137540       64344896  NM_001160183    ZNF138
11   chr7   64137540       64344896  NM_001282360    ZNF107
14   chr7   64137540       64344896     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   29744612       30031589  NM_001301025          TJP1
3   chr15   29744612       30031589     NM_015307      FAM189A1
4   chr15   29744612       30031589     NR_135221  LOC100130111
5    chr2   95496221       95601118     NM_144705         TEKT4
6    chr2   95496221       95601118     NR_003366    ANKRD20A8P
7    chr2   95496221       95601118     NR_037597     LOC442028
8    chr7  110666480      110847450  NM_001099658         LRRN3
9    chr7  110666480      110847450  NM_001244606        IMMP2L
11   chr7  123402821      123635842  NM_001174044         SPAM1
14   chr7  123402821      123635842     NM_012269         HYAL4
15   chr7  123402821      123635842     NR_002731        HYALP1
16   chr7  123402821      123635842     NR_125730        RNU6-2
17   chr7  123402821      123635842     NR_133947  LOC105375483,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28594872       28727014     NR_033351       GOLGA8F
1   chr15   28594872       28727014     NR_033353       GOLGA8G
2   chr15   28594872       28727014     NR_039734     MIR4509-3
3   chr16   18150552       18552898  NM_001004060         NOMO2
4   chr16   18150552       18552898  NM_001282511        NPIPA8
5   chr16   18150552       18552898     NR_036140     MIR3179-1
6   chr16   18150552       18552898     NR_036142     MIR3180-2
7   chr16   18150552       18552898     NR_036144     MIR3180-3
8   chr16   18150552       18552898     NR_037442     MIR3670-1
9   chr16   18150552       18552898     NR_103772  LOC100288162
10  chr16   18150552       18552898     NR_106971     MIR6511A4
11  chr16   18150552       18552898     NR_107060     MIR6770-2
12  chr16   21815306       21917771  NM_001310148        NPIPB4
13  chr16   21815306       21917771     NR_003370        RRN3P1
14  chr20    5202324        5389267     NM_144773        PROKR2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14627992       14926593     NM_080676      MACROD2
1  chr20   14627992       14926593     NR_037841  MACROD2-AS1
3   chr6  162218330      162319094     NM_013988        PARK2
4   chr7   64190781       64368771  NM_001160183       ZNF138
5   chr7   64190781       64368771     NM_021148       ZNF273,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   95863954       96021565     NM_032427         MAML2
1   chr14   21794860       22134344  NM_001001912         OR4E2
2   chr14   21794860       22134344  NM_001005465        OR10G3
3   chr14   21794860       22134344  NM_001005466        OR10G2
4   chr14   21794860       22134344  NM_001163380         RAB2B
5   chr14   21794860       22134344  NM_001170629          CHD8
6   chr14   21794860       22134344  NM_001303523          TOX4
7   chr14   21794860       22134344     NM_007192       SUPT16H
8   chr14   21794860       22134344     NM_019852        METTL3
9   chr14   21794860       22134344     NM_020366       RPGRIP1
12  chr14   21794860       22134344     NR_002916        SNORD8
13  chr14   21794860       22134344     NR_003029        SNORD9
14  chr14   21794860       22134344     NR_111966         SALL2
16   chr6  145847096      145988112     NM_005670         EPM2A
17   chr7   64044740       64314975  NM_001160183        ZNF138
18   chr7   64044740       64314975  NM_001282360        ZNF107
20   chr7   64044740       64314975     NR_077227  LOC100128885
22   chr7   64044740       64314975     NR_106898       MIR6839
23   chr9   41590405       42175467     NR_003528       ZNF658B
24   chr9   41590405       42175467     NR_003670        FGF7P3
25   chr9   41590405       42175467     NR_015363         GLIDR
28   chr9   41590405       42175467     NR_126048  LOC102724238
29   chr9   41590405       42175467     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245056991      245296053  NM_001143943        EFCAB2
3    chr1  245056991      245296053     NR_111907  LOC101928068
4   chr10   67976460       68166312  NM_001127384        CTNNA3
6   chr10   67956746       68262468  NM_001127384        CTNNA3
8   chr14   47816061       48098464  NM_001113498         MDGA2
9   chr15   28711371       29289272  NM_001130414         APBA2
10  chr15   28711371       29289272  NM_001282468       GOLGA8M
11  chr15   28711371       29289272     NR_026589       WHAMMP2
12  chr15   28711371       29289272     NR_033351       GOLGA8F
13  chr15   28711371       29289272     NR_033353       GOLGA8G
14  chr15   28711371       29289272     NR_036443       HERC2P9
15  chr15   28711371       29289272     NR_036475  LOC100289656
16  chr15   28711371       29289272     NR_037599     PDCD6IPP2
17  chr15   28711371       29289272     NR_039734     MIR4509-3
18  chr15   28711371       29289272     NR_047567     GOLGA6L7P
19   chr9    9480847        9631202     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21862927       21998166  NM_001163380         RAB2B
1   chr14   21862927       21998166  NM_001170629          CHD8
2   chr14   21862927       21998166  NM_001303523          TOX4
3   chr14   21862927       21998166     NM_019852        METTL3
6   chr14   21862927       21998166     NR_002916        SNORD8
7   chr14   21862927       21998166     NR_111966         SALL2
9   chr14   67472060       67715081  NM_001256550          MPP5
10  chr14   67472060       67715081     NM_020806          GPHN
11  chr14   67472060       67715081     NM_173526        FAM71D
12  chr20   14677114       14800483     NM_080676       MACROD2
13  chr22   17180477       17453331  NM_001037814          GAB4
14  chr22   17180477       17453331     NM_175878          XKR3
15  chr22   17180477       17453331     NR_003607       HSFY1P1
16  chr22   17180477       17453331     NR_134584  LOC101929350
17   chr6  162850884      162963495     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   68336348       68523233  NM_001127384    CTNNA3
2   chr11   48304501       48500556  NM_001004702     OR4C3
3   chr11   48304501       48500556  NM_001004725     OR4S1
4   chr11   48304501       48500556  NM_001005513    OR4C45
5   chr14   27045513       27191034     NM_002515     NOVA1
7   chr15   52730221       52835815  NM_001142495     MYO5A
8   chr22   17244069       17532778  NM_001037814      GAB4
9   chr22   17244069       17532778     NM_175878      XKR3
10  chr22   17244069       17532778     NR_003607   HSFY1P1
11  chr22   17244069       17532778     NR_015352     CECR7
12   chr3  163661458      164131135     NR_031665   MIR1263
13   chr5  154182463      154417345  NM_001014990    MRPL22
14   chr5  154182463      154417345  NM_001099293     KIF4B
15   chr5  154182463      154417345  NM_001301074     CNOT8
18   chr5  154182463      154417345     NM_015315     LARP1
19   chr5  154182463      154417345     NM_015465    GEMIN5
20   chr5  154182463      154417345     NM_032385    FAXDC2
21   chr5  154182463      154417345     NR_039667   MIR378H
22   chr7  110548985      110747339  NM_001099658     LRRN3
23   chr7  110548985      110747339  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67683968       68273046  NM_001127384        CTNNA3
2   chr16   16388504       16541340  NM_001004067         NOMO3
3   chr16   16388504       16541340  NM_001282511        NPIPA8
4   chr16   16388504       16541340     NR_036140     MIR3179-1
5   chr16   16388504       16541340     NR_036141     MIR3180-1
6   chr16   16388504       16541340     NR_036142     MIR3180-2
7   chr16   16388504       16541340     NR_036447        PKD1P1
8   chr16   16388504       16541340     NR_103772  LOC100288162
9   chr16   16388504       16541340     NR_106766     MIR6511A1
10  chr16   16388504       16541340     NR_106971     MIR6511A4
11  chr16   16388504       16541340     NR_107060     MIR6770-2
12  chr16   16388504       16541340     NR_128713     MIR3670-4
13  chr20    8026351        8230610     NM_015192         PLCB1
14  chr20    8026351        8230610     NR_046809     PLCB1-IT1
15  chr21   23005085       24452861     NR_038400     LINC00308
16  chr21   23005085       24452861     NR_038872     LINC00317
17  chr21   23005085       24452861     NR_106746       MIR6130
18  chr21   23005085       24452861     NR_109958     LINC01425
19  chr21   23005085       24452861     NR_109959  LOC101927843
20   chr4    9091309        9225836  NM_001256852      USP17L10
21   chr4    9091309        9225836  NM_001256853      USP17L12
22   chr4    9091309        9225836  NM_001256854      USP17L11
23   chr5   17728062       17846765     NR_134286     LOC646241
25   chr9    2509783        2646868     NM_003383         VLDLR
26   chr9    2509783        2646868     NR_015375     VLDLR-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12847510       12986671  NM_001009611       PRAMEF4
1    chr1   12847510       12986671  NM_001012276       PRAMEF8
2    chr1   12847510       12986671  NM_001013631      HNRNPCL1
3    chr1   12847510       12986671  NM_001146181      HNRNPCL3
4    chr1   12847510       12986671  NM_001146344      PRAMEF11
5    chr1   12847510       12986671  NM_001294139       PRAMEF1
6    chr1   12847510       12986671  NM_001302551      HNRNPCL4
8    chr1   12847510       12986671     NM_023014       PRAMEF2
9   chr13   19684780       19823678     NM_006001        TUBA3C
10  chr13   19684780       19823678     NR_126054  LOC101928697
11  chr14   21777654       21907519  NM_001170629          CHD8
12  chr14   21777654       21907519     NM_007192       SUPT16H
13  chr14   21777654       21907519     NM_020366       RPGRIP1
15  chr14   21777654       21907519     NR_002916        SNORD8
16  chr14   21777654       21907519     NR_003029        SNORD9
17  chr15   54535809       55964308  NM_001033559        DYX1C1
19  chr15   54535809       55964308  NM_001080534        UNC13C
20  chr15   54535809       55964308  NM_001198784      C15orf65
21  chr15   54535809       55964308  NM_001308423       PIGBOS1
23  chr15   54535809       55964308  NM_001330326         PYGO1
24  chr15   54535809       55964308     NM_004580        RAB27A
25  chr15   54535809       55964308     NM_004748         CCPG1
26  chr15   54535809       55964308     NM_004855          PIGB
28  chr15   54535809       55964308     NM_016304       RSL24D1
30  chr15   54535809       55964308     NM_173814          PRTG
34  chr15   54535809       55964308     NR_030358        MIR628
35  chr15   54535809       55964308     NR_037923  DYX1C1-CCPG1
36  chr15   54535809       55964308     NR_135679  LOC105370829
37  chr22   17252947       17657742  NM_001037814          GAB4
38  chr22   17252947       17657742  NM_001163079         CECR6
39  chr22   17252947       17657742  NM_001289905        IL17RA
40  chr22   17252947       17657742     NM_017829         CECR5
43  chr22   17252947       17657742     NM_175878          XKR3
44  chr22   17252947       17657742     NR_003607       HSFY1P1
45  chr22   17252947       17657742     NR_015352         CECR7
46  chr22   17252947       17657742     NR_024482     CECR5-AS1
47  chr22   17252947       17657742     NR_103793  LOC100996342
48   chr7  110683086      111080058  NM_001099658         LRRN3
49   chr7  110683086      111080058  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21700372       23018884  NM_001001912     OR4E2
1   chr14   21700372       23018884  NM_001005465    OR10G3
2   chr14   21700372       23018884  NM_001005466    OR10G2
3   chr14   21700372       23018884  NM_001163380     RAB2B
4   chr14   21700372       23018884  NM_001170629      CHD8
5   chr14   21700372       23018884  NM_001303523      TOX4
6   chr14   21700372       23018884  NM_001317107     OR4E1
7   chr14   21700372       23018884     NM_007192   SUPT16H
8   chr14   21700372       23018884     NM_019852    METTL3
9   chr14   21700372       23018884     NM_020366   RPGRIP1
11  chr14   21700372       23018884     NM_031314    HNRNPC
13  chr14   21700372       23018884     NR_002916    SNORD8
14  chr14   21700372       23018884     NR_003029    SNORD9
15  chr14   21700372       23018884     NR_111966     SALL2
17   chr7   64113756       64386094  NM_001160183    ZNF138
18   chr7   64113756       64386094  NM_001282360    ZNF107
19   chr7   64113756       64386094     NM_021148    ZNF273
22   chr7   64113756       64386094     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21929287       22086605  NM_001005465        OR10G3
1   chr14   21929287       22086605  NM_001163380         RAB2B
2   chr14   21929287       22086605  NM_001303523          TOX4
3   chr14   21929287       22086605     NM_019852        METTL3
5   chr14   21929287       22086605     NR_111966         SALL2
7   chr15   28512666       28678440     NM_004667         HERC2
8   chr15   28512666       28678440     NR_033351       GOLGA8F
9   chr15   28512666       28678440     NR_033353       GOLGA8G
10  chr15   28512666       28678440     NR_039734     MIR4509-3
11  chr15   28550425       29070986  NM_001282468       GOLGA8M
12  chr15   28550425       29070986     NM_004667         HERC2
13  chr15   28550425       29070986     NR_026589       WHAMMP2
14  chr15   28550425       29070986     NR_033351       GOLGA8F
16  chr15   28550425       29070986     NR_033353       GOLGA8G
18  chr15   28550425       29070986     NR_036443       HERC2P9
19  chr15   28550425       29070986     NR_036475  LOC100289656
20  chr15   28550425       29070986     NR_037599     PDCD6IPP2
21  chr15   28550425       29070986     NR_039734     MIR4509-3
23   chr2   78139462       78339980     NR_024342        SNAR-H
24   chr2   78139462       78339980     NR_110286  LOC101927926
25   chr2   78139462       78339980     NR_110287  LOC101927948
26   chr2   78139462       78339980     NR_110288  LOC101927967
27   chr5  100962978      102809372  NM_001281471       PPIP5K2
28   chr5  100962978      102809372  NM_001289004       SLCO6A1
29   chr5  100962978      102809372  NM_001316968       C5orf30
31   chr5  100962978      102809372  NM_001317954          GIN1
32   chr5  100962978      102809372  NM_001319943           PAM
35   chr5  100962978      102809372     NM_180991       SLCO4C1
36   chr5  100962978      102809372     NR_047462     LINC00492
37   chr5  100962978      102809372     NR_103753     LINC00491,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28288964       28392281     NM_000275          OCA2
2   chr15   28288964       28392281     NM_004667         HERC2
3   chr15   28769484       29250731  NM_001130414         APBA2
4   chr15   28769484       29250731  NM_001282468       GOLGA8M
5   chr15   28769484       29250731     NR_026589       WHAMMP2
6   chr15   28769484       29250731     NR_033351       GOLGA8F
7   chr15   28769484       29250731     NR_033353       GOLGA8G
8   chr15   28769484       29250731     NR_036443       HERC2P9
9   chr15   28769484       29250731     NR_036475  LOC100289656
10  chr15   28769484       29250731     NR_037599     PDCD6IPP2
11  chr15   28769484       29250731     NR_047567     GOLGA6L7P
12  chr17   14187699       14365654     NM_006041      HS3ST3B1
13  chr17   14187699       14365654     NR_026880      MGC12916
14  chr22   18968442       19116822  NM_001184781         DGCR2
15  chr22   18968442       19116822     NR_002733         DGCR5
16  chr22   18968442       19116822     NR_024157        DGCR11
17  chr22   18968442       19116822     NR_024159         DGCR9
18  chr22   18968442       19116822     NR_026651        DGCR10
20   chr7   75758960       75863857  NM_001110199         SRRM3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   20896746       21057277  NM_001145946    SLCO1C1
2   chr12   20896746       21057277     NM_019844    SLCO1B3
3   chr13   54769634       55178499     NR_031628    MIR1297
4   chr14   21770213       23362843  NM_001001912      OR4E2
5   chr14   21770213       23362843  NM_001005465     OR10G3
6   chr14   21770213       23362843  NM_001005466     OR10G2
7   chr14   21770213       23362843  NM_001126105     SLC7A7
9   chr14   21770213       23362843  NM_001163380      RAB2B
10  chr14   21770213       23362843  NM_001170629       CHD8
11  chr14   21770213       23362843  NM_001303523       TOX4
12  chr14   21770213       23362843  NM_001317107      OR4E1
13  chr14   21770213       23362843  NM_001318870     MRPL52
14  chr14   21770213       23362843  NM_001329226      LRP10
15  chr14   21770213       23362843     NM_001344       DAD1
16  chr14   21770213       23362843     NM_004995      MMP14
17  chr14   21770213       23362843     NM_005015      OXA1L
18  chr14   21770213       23362843     NM_007192    SUPT16H
19  chr14   21770213       23362843     NM_019852     METTL3
20  chr14   21770213       23362843     NM_020366    RPGRIP1
22  chr14   21770213       23362843     NM_022060      ABHD4
24  chr14   21770213       23362843     NM_173527       REM2
25  chr14   21770213       23362843     NR_002916     SNORD8
26  chr14   21770213       23362843     NR_003029     SNORD9
28  chr14   21770213       23362843     NR_111966      SALL2
30  chr15   85617745       85748066  NM_001243137      PDE8A
32  chr15   85617745       85748066     NR_049748  LOC642423,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143391794      144690316  NM_001123068       PPIAL4G
1   chr1  143391794      144690316  NM_001135789       PPIAL4C
2   chr1  143391794      144690316  NM_001277444         NBPF9
3   chr1  143391794      144690316  NM_001278267        NBPF20
4   chr1  143391794      144690316  NM_001287385        FAM72C
5   chr1  143391794      144690316  NM_001345942        FAM72D
9   chr1  143391794      144690316     NR_003242        PFN1P2
10  chr1  143391794      144690316     NR_024511     LINC00623
12  chr1  143391794      144690316     NR_102405         NBPF8
13  chr1  143391794      144690316     NR_104014     LINC01138
14  chr1  143391794      144690316     NR_106967       MIR6077
15  chr1  143391794      144690316     NR_111930  LOC100132057
16  chr1  143391794      144690316     NR_111953     LINC00869
18  chr7   29493296       29878769  NM_001080529         WIPF3
19  chr7   29493296       29878769  NM_001293069          CHN2
23  chr7   29493296       29878769  NM_001329997         PRR15
26  chr7   29493296       29878769     NR_024278     LOC646762
27  chr7   29493296       29878769     NR_027347       ZNRF2P2
28  chr7   29493296       29878769     NR_036482     DPY19L2P3
29  chr7   29493296       29878769     NR_039600      MIR550A3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   73430942       73832441     NR_110676     LINC01360
2   chr15   28559344       28703918     NM_004667         HERC2
3   chr15   28559344       28703918     NR_033351       GOLGA8F
4   chr15   28559344       28703918     NR_033353       GOLGA8G
5   chr15   28559344       28703918     NR_039734     MIR4509-3
6   chr15   29772992       29896934     NM_015307      FAM189A1
7   chr20   14777959       15447489  NM_001033087       MACROD2
9   chr20   14777959       15447489     NR_037841   MACROD2-AS1
11   chr4   48012023       48262943     NM_000087         CNGA1
12   chr4   48012023       48262943     NM_003215           TEC
13   chr4   48012023       48262943     NM_003328           TXK
14   chr4   48012023       48262943     NM_207330        NIPAL1
15   chr9   72305174       72542623  NM_001010940      C9orf135
16   chr9   72305174       72542623  NM_001099666         PTAR1
17   chr9   72305174       72542623     NR_038833  C9orf135-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11    4164429        4322500     NR_047550  LOC100506082
1   chr7   29536461       29669337  NM_001293069          CHN2
5   chr7   29536461       29669337  NM_001329997         PRR15,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   86302492       88150382     NM_013244        MGAT4C
1   chr12   86302492       88150382     NR_135020  LOC105369879
2   chr13   63283235       63434958     NR_047029     LINC00448
5   chr16   18246744       18476979  NM_001282511        NPIPA8
6   chr16   18246744       18476979     NR_103772  LOC100288162
7   chr16   18246744       18476979     NR_106971     MIR6511A4
8   chr16   18246744       18476979     NR_107060     MIR6770-2
9    chr2  167166943      167328055     NM_002976         SCN7A
10   chr2  167166943      167328055     NM_002977         SCN9A
11  chr21   22584343       22867182     NM_004540         NCAM2
12   chr7   64029416       64143783  NM_001282360        ZNF107
13   chr7   64029416       64143783     NR_033245     LOC641746
14   chr7   64029416       64143783     NR_077227  LOC100128885
16   chr7   64029416       64143783     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   54423860       54551849     NR_047488  LINC00558
1   chr14   21761923       21875801  NM_001170629       CHD8
2   chr14   21761923       21875801     NM_007192    SUPT16H
3   chr14   21761923       21875801     NM_020366    RPGRIP1
5   chr14   21761923       21875801     NR_002916     SNORD8
6   chr14   21761923       21875801     NR_003029     SNORD9
7   chr16   69982892       70099384  NM_001136214    CLEC18A
10  chr16   69982892       70099384     NR_003610    PDXDC2P
11  chr16   69982892       70099384     NR_036265  MIR1972-2
12  chr20   14709592       14812057     NM_080676    MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1    2848534        2977323     NM_080431        ACTRT2
1    chr1    2848534        2977323     NR_015440     LINC00982
2   chr11    6673383        6940374  NM_001004460        OR10A2
3   chr11    6673383        6940374  NM_001004489        OR2AG1
4   chr11    6673383        6940374  NM_001004490        OR2AG2
5   chr11    6673383        6940374     NM_003696         OR6A2
6   chr11    6673383        6940374     NM_003700         OR2D2
7   chr11    6673383        6940374     NM_003737         DCHS1
8   chr11    6673383        6940374     NM_022061        MRPL17
9   chr11    6673383        6940374     NM_178168        OR10A5
10  chr11    6673383        6940374     NM_207186        OR10A4
11  chr11    6673383        6940374     NR_003945        GVINP1
12  chr11   48269081       49697580  NM_001004702         OR4C3
13  chr11   48269081       49697580  NM_001004725         OR4S1
14  chr11   48269081       49697580  NM_001004726         OR4X1
15  chr11   48269081       49697580  NM_001005512        OR4A47
16  chr11   48269081       49697580  NM_001005513        OR4C45
17  chr11   48269081       49697580  NM_001193472         FOLH1
18  chr11   48269081       49697580  NM_001206626       TRIM49B
19  chr11   48269081       49697580  NM_001206631       TRIM64C
20  chr11   48269081       49697580     NR_027044     LOC440040
21  chr15   28601057       28766831     NR_033351       GOLGA8F
23  chr15   28601057       28766831     NR_033353       GOLGA8G
25  chr15   28601057       28766831     NR_039734     MIR4509-3
27  chr16   16370653       16499212  NM_001004067         NOMO3
28  chr16   16370653       16499212  NM_001282511        NPIPA8
29  chr16   16370653       16499212     NR_036140     MIR3179-1
30  chr16   16370653       16499212     NR_036141     MIR3180-1
31  chr16   16370653       16499212     NR_036142     MIR3180-2
32  chr16   16370653       16499212     NR_036447        PKD1P1
33  chr16   16370653       16499212     NR_103772  LOC100288162
34  chr16   16370653       16499212     NR_106766     MIR6511A1
35  chr16   16370653       16499212     NR_106971     MIR6511A4
36  chr16   16370653       16499212     NR_107060     MIR6770-2
37  chr16   16370653       16499212     NR_128713     MIR3670-4
38   chr4   69187160       69313614  NM_001031732        YTHDC1
39   chr4   69187160       69313614     NM_014058     TMPRSS11E
40   chr4  169238544      169525241  NM_001012967        DDX60L
41   chr4  169238544      169525241  NM_001166108         PALLD
43   chr4  169238544      169525241     NM_017631         DDX60
44   chr6  155431512      155566238  NM_001010927         TIAM2
46   chr8  124966438      125561905  NM_001039112        FER1L6
47   chr8  124966438      125561905  NM_001146160        TATDN1
49   chr8  124966438      125561905     NM_005005        NDUFB9
50   chr8  124966438      125561905     NM_007218        RNF139
51   chr8  124966438      125561905     NM_017956        TRMT12
52   chr8  124966438      125561905     NM_194291        TMEM65
53   chr8  124966438      125561905     NR_040044    FER1L6-AS1
54   chr8  124966438      125561905     NR_103547    FER1L6-AS2
55   chr8  124966438      125561905     NR_106903       MIR6844
56   chr8  124966438      125561905     NR_108047    RNF139-AS1
58   chr8  124966438      125561905     NR_125420  LOC101927588,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   42188046       42293736  NM_001346175         LRFN5
1   chr15   28808592       29419703  NM_001130414         APBA2
2   chr15   28808592       29419703  NM_001282468       GOLGA8M
3   chr15   28808592       29419703     NM_015307      FAM189A1
4   chr15   28808592       29419703     NR_026589       WHAMMP2
5   chr15   28808592       29419703     NR_036443       HERC2P9
6   chr15   28808592       29419703     NR_036475  LOC100289656
7   chr15   28808592       29419703     NR_037599     PDCD6IPP2
8   chr15   28808592       29419703     NR_047567     GOLGA6L7P
9   chr15   30267129       30534070  NM_001282472       GOLGA8J
10  chr15   30267129       30534070     NR_026771  DKFZP434L187
11  chr15   30267129       30534070     NR_026859        ULK4P3
12  chr15   30267129       30534070     NR_033933       GOLGA8T
13  chr18   24821119       25067782     NR_134589  LOC105372038
14   chr3  118704306      119006399  NM_001015887        IGSF11
15   chr3  118704306      119006399     NM_006952         UPK1B
17   chr3  118704306      119006399     NM_152539       C3orf30
18   chr3  118704306      119006399     NM_212543       B4GALT4
19   chr3  118704306      119006399     NR_046574   B4GALT4-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143459006      143969556  NM_001123068       PPIAL4G
1   chr1  143459006      143969556  NM_001287385        FAM72C
2   chr1  143459006      143969556  NM_001345942        FAM72D
6   chr1  143459006      143969556     NR_104014     LINC01138
7   chr1  143459006      143969556     NR_106967       MIR6077
8   chr1  143459006      143969556     NR_111930  LOC100132057
10  chr4   69182024       69283754  NM_001031732        YTHDC1,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr14   18454971       21982061     NM_000270           PNP
1    chr14   18454971       21982061  NM_001001673        RNASE9
2    chr14   18454971       21982061  NM_001001968         OR6S1
3    chr14   18454971       21982061  NM_001004063         OR4K1
4    chr14   18454971       21982061  NM_001004479        OR11H4
5    chr14   18454971       21982061  NM_001004480        OR11H6
6    chr14   18454971       21982061  NM_001004712        OR4K14
7    chr14   18454971       21982061  NM_001004714        OR4K13
8    chr14   18454971       21982061  NM_001004715        OR4K17
9    chr14   18454971       21982061  NM_001004717         OR4L1
10   chr14   18454971       21982061  NM_001004723         OR4N2
11   chr14   18454971       21982061  NM_001004724         OR4N5
12   chr14   18454971       21982061  NM_001004731        OR5AU1
13   chr14   18454971       21982061  NM_001005483         OR4K5
14   chr14   18454971       21982061  NM_001005486        OR4K15
15   chr14   18454971       21982061  NM_001005500         OR4M1
16   chr14   18454971       21982061  NM_001005501         OR4K2
17   chr14   18454971       21982061  NM_001005503        OR11G2
18   chr14   18454971       21982061  NM_001012264       RNASE13
19   chr14   18454971       21982061  NM_001012975       RNASE10
20   chr14   18454971       21982061  NM_001013354       OR11H12
21   chr14   18454971       21982061  NM_001024822       RNASE12
22   chr14   18454971       21982061  NM_001029991       METTL17
23   chr14   18454971       21982061  NM_001097577           ANG
24   chr14   18454971       21982061  NM_001100814       TMEM55B
25   chr14   18454971       21982061  NM_001101672        ZNF219
27   chr14   18454971       21982061  NM_001109997        KLHL33
29   chr14   18454971       21982061  NM_001145442         POTEM
30   chr14   18454971       21982061  NM_001146683       TMEM253
31   chr14   18454971       21982061  NM_001163380         RAB2B
..     ...        ...            ...           ...           ...
75   chr14   18454971       21982061     NR_033909          ECRP
76   chr14   18454971       21982061     NR_038970     LINC00641
78   chr14   18454971       21982061     NR_046104     LOC642426
79   chr14   18454971       21982061     NR_046571     POTEH-AS1
80   chr14   18454971       21982061     NR_073459       BMS1P18
82   chr14   18454971       21982061     NR_106774       MIR6717
83   chr14   18454971       21982061     NR_110139  LOC101929718
84   chr14   18454971       21982061     NR_110504  LOC101929572
85   chr14   18454971       21982061     NR_110505  LOC100508046
86   chr14   18454971       21982061     NR_110526       DUXAP10
88   chr14   18454971       21982061     NR_122043     LOC254028
89   chr14   18454971       21982061     NR_122111     LINC01296
92   chr14   18454971       21982061     NR_133911       BMS1P22
94   chr16   18301892       18562233  NM_001004060         NOMO2
95   chr16   18301892       18562233  NM_001282511        NPIPA8
96   chr16   18301892       18562233     NR_036140     MIR3179-1
97   chr16   18301892       18562233     NR_036142     MIR3180-2
98   chr16   18301892       18562233     NR_036144     MIR3180-3
99   chr16   18301892       18562233     NR_037442     MIR3670-1
100  chr16   18301892       18562233     NR_103772  LOC100288162
101  chr16   18301892       18562233     NR_106971     MIR6511A4
102  chr16   18301892       18562233     NR_107060     MIR6770-2
103  chr19   33123041       33283650  NM_001105570        NUDT19
104  chr19   33123041       33283650  NM_001110822        TDRD12
105  chr19   33123041       33283650     NM_032139       ANKRD27
106  chr19   33123041       33283650     NM_207391        RGS9BP
107   chr6  119773563      119913603     NR_046100     LOC285762
108   chr6  119773563      119913603     NR_134600  LOC105377975
109   chr7   75730614       75885301  NM_001110199         SRRM3
110   chr7   75730614       75885301     NR_135079       GTF2IP7

[93 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18367075       18737299  NM_001004060         NOMO2
1   chr16   18367075       18737299  NM_001282511        NPIPA8
2   chr16   18367075       18737299     NR_003569       ABCC6P1
3   chr16   18367075       18737299     NR_036140     MIR3179-1
4   chr16   18367075       18737299     NR_036142     MIR3180-2
5   chr16   18367075       18737299     NR_036144     MIR3180-3
6   chr16   18367075       18737299     NR_037442     MIR3670-1
7   chr16   18367075       18737299     NR_103772  LOC100288162
8   chr16   18367075       18737299     NR_106971     MIR6511A4
9   chr16   18367075       18737299     NR_107060     MIR6770-2
10   chr2  107721756      107877189     NR_049853      MIR548AU
11   chr4    9119482        9229015  NM_001256852      USP17L10
12   chr4    9119482        9229015  NM_001256853      USP17L12
13   chr4    9119482        9229015  NM_001256854      USP17L11
14   chr4    9119482        9229015  NM_001256855      USP17L13
15   chr9   67064148       67277611     NR_002817        AQP7P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28119785       28356529     NM_000275          OCA2
2   chr15   28119785       28356529     NM_004667         HERC2
3   chr22   17227696       17733327  NM_001037814          GAB4
4   chr22   17227696       17733327  NM_001163079         CECR6
5   chr22   17227696       17733327  NM_001282227         CECR1
7   chr22   17227696       17733327  NM_001289905        IL17RA
8   chr22   17227696       17733327     NM_017829         CECR5
11  chr22   17227696       17733327     NM_175878          XKR3
13  chr22   17227696       17733327     NR_003607       HSFY1P1
14  chr22   17227696       17733327     NR_015352         CECR7
15  chr22   17227696       17733327     NR_024482     CECR5-AS1
16  chr22   17227696       17733327     NR_103793  LOC100996342
17  chr22   17227696       17733327     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18207237       19288396  NM_001004060         NOMO2
1   chr16   18207237       19288396     NM_001019        RPS15A
2   chr16   18207237       19288396  NM_001160364          TMC7
3   chr16   18207237       19288396  NM_001190983          COQ7
4   chr16   18207237       19288396  NM_001282511        NPIPA8
6   chr16   18207237       19288396  NM_001308157         SYT17
7   chr16   18207237       19288396  NM_001313858       ARL6IP1
10  chr16   18207237       19288396     NM_015092          SMG1
14  chr16   18207237       19288396     NR_003569       ABCC6P1
15  chr16   18207237       19288396     NR_028028      ITPRIPL2
16  chr16   18207237       19288396     NR_036140     MIR3179-1
17  chr16   18207237       19288396     NR_036142     MIR3180-2
18  chr16   18207237       19288396     NR_036144     MIR3180-3
19  chr16   18207237       19288396     NR_037442     MIR3670-1
20  chr16   18207237       19288396     NR_103772  LOC100288162
21  chr16   18207237       19288396     NR_106971     MIR6511A4
22  chr16   18207237       19288396     NR_107060     MIR6770-2
23  chr16   18207237       19288396     NR_119379  LOC102723385
25  chr16   21488961       21602231     NR_002594      SLC7A5P2
26  chr16   21488961       21602231     NR_027155        SMG1P3
27  chr16   21488961       21602231     NR_049833     MIR3680-2
28  chr16   21488961       21602231     NR_110930  LOC101927814
29   chr7    3335369        3461934     NM_152744          SDK1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67957748       68064505  NM_001127384     CTNNA3
2   chr14   21638121       21740720     NM_031314     HNRNPC
3   chr14   21638121       21740720     NR_038970  LINC00641
5   chr19   33109693       33231532  NM_001105570     NUDT19
6   chr19   33109693       33231532  NM_001110822     TDRD12
7   chr19   33109693       33231532     NM_032139    ANKRD27
8   chr19   33109693       33231532     NM_207391     RGS9BP
9    chr3    1949840        2515713  NM_001206955      CNTN4
11   chr3    1949840        2515713     NR_046555  CNTN4-AS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143634594      144301035  NM_001123068       PPIAL4G
1    chr1  143634594      144301035  NM_001278267        NBPF20
2    chr1  143634594      144301035  NM_001287385        FAM72C
3    chr1  143634594      144301035  NM_001345942        FAM72D
7    chr1  143634594      144301035     NR_024511     LINC00623
9    chr1  143634594      144301035     NR_104014     LINC01138
10   chr1  143634594      144301035     NR_106967       MIR6077
11   chr1  143634594      144301035     NR_111930  LOC100132057
12   chr1  143634594      144301035     NR_111953     LINC00869
14  chr10   67719433       67864755  NM_001127384        CTNNA3
16   chr4   69162222       69680441  NM_001031732        YTHDC1
17   chr4   69162222       69680441     NM_001076       UGT2B15
18   chr4   69162222       69680441     NM_001077       UGT2B17
19   chr4   69162222       69680441     NM_014058     TMPRSS11E
20   chr4   71416283       71649304  NM_001037442         RUFY3
25   chr4   71416283       71649304     NM_016519          AMBN
26   chr4   71416283       71649304     NM_020368          UTP3
27   chr4   71416283       71649304     NM_031889          ENAM
28   chr4   71416283       71649304     NM_144646        JCHAIN,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   21911660       22076548  NM_001005465      OR10G3
1   chr14   21911660       22076548  NM_001163380       RAB2B
2   chr14   21911660       22076548  NM_001303523        TOX4
3   chr14   21911660       22076548     NM_019852      METTL3
5   chr14   21911660       22076548     NR_111966       SALL2
7   chr15   28592440       29013897  NM_001282468     GOLGA8M
8   chr15   28592440       29013897     NR_026589     WHAMMP2
9   chr15   28592440       29013897     NR_033351     GOLGA8F
11  chr15   28592440       29013897     NR_033353     GOLGA8G
13  chr15   28592440       29013897     NR_036443     HERC2P9
14  chr15   28592440       29013897     NR_039734   MIR4509-3
16  chr15   98215117       98385590     NR_024172   LINC00923
17   chr3  155605562      156227081  NM_001308217      KCNAB1
20   chr3  155605562      156227081     NM_003875        GMPS
23   chr3  155605562      156227081     NR_046617  KCNAB1-AS2
24   chr3  155605562      156227081     NR_046618  KCNAB1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  189987352      190335122  NM_001317188        BRINP3
2   chr16   16265741       16669772  NM_001004067         NOMO3
3   chr16   16265741       16669772  NM_001079528         ABCC6
5   chr16   16265741       16669772  NM_001282511        NPIPA8
6   chr16   16265741       16669772     NR_036140     MIR3179-1
7   chr16   16265741       16669772     NR_036141     MIR3180-1
8   chr16   16265741       16669772     NR_036142     MIR3180-2
9   chr16   16265741       16669772     NR_036447        PKD1P1
10  chr16   16265741       16669772     NR_103772  LOC100288162
11  chr16   16265741       16669772     NR_106766     MIR6511A1
12  chr16   16265741       16669772     NR_106971     MIR6511A4
13  chr16   16265741       16669772     NR_107060     MIR6770-2
14  chr16   16265741       16669772     NR_128713     MIR3670-4
15   chr2  186241592      186667599     NM_173651         FSIP2
16   chr2  186241592      186667599     NR_110214  LOC101927196
19   chr2  186241592      186667599     NR_144453     FSIP2-AS1
21   chr5   66212930       66354315  NM_001164664         MAST4
26   chr5   66212930       66354315     NR_111908     MAST4-AS1
27   chr6   89490853       89632050  NM_001286428         RNGTT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187142843      187334241     NR_126347     LINC01036
1   chr14   21841357       21966697  NM_001163380         RAB2B
2   chr14   21841357       21966697  NM_001170629          CHD8
3   chr14   21841357       21966697  NM_001303523          TOX4
4   chr14   21841357       21966697     NM_007192       SUPT16H
5   chr14   21841357       21966697     NM_019852        METTL3
8   chr14   21841357       21966697     NR_002916        SNORD8
9   chr14   21841357       21966697     NR_003029        SNORD9
10  chr15   28652521       28938689     NR_033351       GOLGA8F
11  chr15   28652521       28938689     NR_033353       GOLGA8G
12  chr15   28652521       28938689     NR_036443       HERC2P9
13  chr15   28652521       28938689     NR_039734     MIR4509-3
15   chr2  133660931      133761665     NM_207363        NCKAP5
16   chr2  133660931      133761665     NR_135572  LOC101928185,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13  113093787      113221642  NM_001286278       TUBGCP3
3   chr15   28667572       29160780  NM_001282468       GOLGA8M
4   chr15   28667572       29160780     NR_026589       WHAMMP2
5   chr15   28667572       29160780     NR_033351       GOLGA8F
6   chr15   28667572       29160780     NR_033353       GOLGA8G
7   chr15   28667572       29160780     NR_036443       HERC2P9
8   chr15   28667572       29160780     NR_036475  LOC100289656
9   chr15   28667572       29160780     NR_037599     PDCD6IPP2
10  chr15   28667572       29160780     NR_039734     MIR4509-3
12  chr15   28667572       29160780     NR_047567     GOLGA6L7P
13   chr6    1866882        1995535  NM_001253846          GMDS
15   chr9   41865728       42043683     NR_003670        FGF7P3
16   chr9   41865728       42043683     NR_015363         GLIDR
19   chr9   41865728       42043683     NR_126048  LOC102724238
20   chr9   41865728       42043683     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21778145       21890299  NM_001170629      CHD8
1  chr14   21778145       21890299     NM_007192   SUPT16H
2  chr14   21778145       21890299     NM_020366   RPGRIP1
4  chr14   21778145       21890299     NR_002916    SNORD8
5  chr14   21778145       21890299     NR_003029    SNORD9
6   chr5   93392314       93790533  NM_001145678  KIAA0825
7   chr5   93392314       93790533  NM_001163418   FAM172A
8   chr7   14878443       14981603     NM_004080      DGKB,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   85965179       86074262     NR_046989  LINC00351
1   chr14   21765930       21899904  NM_001170629       CHD8
2   chr14   21765930       21899904     NM_007192    SUPT16H
3   chr14   21765930       21899904     NM_020366    RPGRIP1
5   chr14   21765930       21899904     NR_002916     SNORD8
6   chr14   21765930       21899904     NR_003029     SNORD9
7   chr22   19060123       19161889  NM_001184781      DGCR2
8   chr22   19060123       19161889     NM_005315       GSC2
9   chr22   19060123       19161889     NM_022719     DGCR14
10  chr22   19060123       19161889     NM_053006      TSSK2
11  chr22   19060123       19161889     NR_103767  LINC01311
12   chr6  130095509      130232934  NM_001010876    TMEM244
13   chr7   84744051       85012167     NM_152754     SEMA3D,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21787541       22019592  NM_001163380     RAB2B
1   chr14   21787541       22019592  NM_001170629      CHD8
2   chr14   21787541       22019592  NM_001303523      TOX4
3   chr14   21787541       22019592     NM_007192   SUPT16H
4   chr14   21787541       22019592     NM_019852    METTL3
5   chr14   21787541       22019592     NM_020366   RPGRIP1
8   chr14   21787541       22019592     NR_002916    SNORD8
9   chr14   21787541       22019592     NR_003029    SNORD9
10  chr14   21787541       22019592     NR_111966     SALL2
12   chr6  162660615      162808676     NM_013988     PARK2
13   chr7    3341499        3488898     NM_152744      SDK1
14   chr8   50517709       51183530  NM_001287813     SNTG1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   88927122       89099529  NM_001099338       NUTM2A
1   chr10   88927122       89099529  NM_001330112       FAM35A
3   chr10   88927122       89099529     NR_024397   NUTM2A-AS1
4   chr14   21872069       22145791  NM_001001912        OR4E2
5   chr14   21872069       22145791  NM_001005465       OR10G3
6   chr14   21872069       22145791  NM_001005466       OR10G2
7   chr14   21872069       22145791  NM_001163380        RAB2B
8   chr14   21872069       22145791  NM_001170629         CHD8
9   chr14   21872069       22145791  NM_001303523         TOX4
10  chr14   21872069       22145791  NM_001317107        OR4E1
11  chr14   21872069       22145791     NM_019852       METTL3
14  chr14   21872069       22145791     NR_111966        SALL2
16  chr16   15381754       15580408  NM_001128423       MPV17L
17  chr16   15381754       15580408  NM_001277325       NPIPA5
18  chr16   15381754       15580408     NM_033201     C16orf45
19   chr2  233076675      233350088  NM_001257281       DIS3L2
20   chr2  233076675      233350088  NM_001290787        ECEL1
21   chr2  233076675      233350088     NM_001631         ALPI
22   chr2  233076675      233350088     NM_001632         ALPP
23   chr2  233076675      233350088     NM_031313       ALPPL2
25   chr2  233076675      233350088     NR_028501      ECEL1P2
26  chr20   14632707       14900530     NM_080676      MACROD2
27  chr20   14632707       14900530     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68401977       68518684  NM_001127384        CTNNA3
2   chr11   89148824       89296115  NM_001143837          NOX4
8   chr12   97961990       98180396     NR_077240     LOC643711
10  chr22   17234591       17469314  NM_001037814          GAB4
11  chr22   17234591       17469314     NM_175878          XKR3
12  chr22   17234591       17469314     NR_003607       HSFY1P1
13   chr4  169250795      169441433  NM_001012967        DDX60L
14   chr4  169250795      169441433  NM_001166108         PALLD
16   chr7   18406675       18536849  NM_001204144         HDAC9
24   chr7   64051400       64382040  NM_001160183        ZNF138
25   chr7   64051400       64382040  NM_001282360        ZNF107
26   chr7   64051400       64382040     NM_021148        ZNF273
28   chr7   64051400       64382040     NR_077227  LOC100128885
30   chr7   64051400       64382040     NR_106898       MIR6839
31   chr7  133250828      133433374     NM_021807         EXOC4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21920367       22552841  NM_001001912         OR4E2
1   chr14   21920367       22552841  NM_001005465        OR10G3
2   chr14   21920367       22552841  NM_001005466        OR10G2
3   chr14   21920367       22552841  NM_001163380         RAB2B
4   chr14   21920367       22552841  NM_001303523          TOX4
5   chr14   21920367       22552841  NM_001317107         OR4E1
6   chr14   21920367       22552841     NM_019852        METTL3
8   chr14   21920367       22552841     NR_111966         SALL2
10   chr4    3904001        4020368     NR_130741       FAM86EP
11   chr4   69269332       71747468     NM_000200          HTN3
12   chr4   69269332       71747468  NM_001009181         STATH
13   chr4   69269332       71747468  NM_001037442         RUFY3
14   chr4   69269332       71747468     NM_001073       UGT2B11
15   chr4   69269332       71747468     NM_001075       UGT2B10
17   chr4   69269332       71747468     NM_001076       UGT2B15
18   chr4   69269332       71747468     NM_001077       UGT2B17
19   chr4   69269332       71747468  NM_001098477         GRSF1
20   chr4   69269332       71747468  NM_001105677        UGT2A2
22   chr4   69269332       71747468  NM_001145006          MUC7
24   chr4   69269332       71747468  NM_001207004       UGT2B28
25   chr4   69269332       71747468  NM_001252274        UGT2A1
26   chr4   69269332       71747468  NM_001286731          AMTN
29   chr4   69269332       71747468  NM_001297615        UGT2B4
32   chr4   69269332       71747468  NM_001302770          CSN2
33   chr4   69269332       71747468  NM_001302807         OPRPN
34   chr4   69269332       71747468  NM_001330719        UGT2B7
36   chr4   69269332       71747468     NM_001890        CSN1S1
38   chr4   69269332       71747468     NM_002159          HTN1
39   chr4   69269332       71747468     NM_005212          CSN3
40   chr4   69269332       71747468     NM_005420       SULT1E1
41   chr4   69269332       71747468     NM_006685         SMR3B
42   chr4   69269332       71747468     NM_012390         SMR3A
43   chr4   69269332       71747468     NM_014058     TMPRSS11E
44   chr4   69269332       71747468     NM_014465       SULT1B1
45   chr4   69269332       71747468     NM_016519          AMBN
46   chr4   69269332       71747468     NM_017855          ODAM
47   chr4   69269332       71747468     NM_020368          UTP3
48   chr4   69269332       71747468     NM_024743        UGT2A3
49   chr4   69269332       71747468     NM_031889          ENAM
50   chr4   69269332       71747468     NM_033122         CABS1
51   chr4   69269332       71747468     NM_144646        JCHAIN
53   chr4   69269332       71747468     NM_152997         FDCSP
54   chr4   69269332       71747468     NM_214711         PRR27
55   chr4   69269332       71747468     NR_003720      CSN1S2AP
56   chr4   69269332       71747468     NR_033311      CSN1S2BP
57   chr4   69269332       71747468     NR_136191  LOC105377267
58   chr8   19731591       19850362     NM_000237           LPL
59   chr9   41917150       42070516     NR_003670        FGF7P3
60   chr9   41917150       42070516     NR_015363         GLIDR
63   chr9   41917150       42070516     NR_126048  LOC102724238
64   chr9   41917150       42070516     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   31197728       31308687     NM_181807         DCDC1
1   chr12   27062089       27232159  NM_001171887      FGFR1OP2
3   chr12   27062089       27232159  NM_001271811         MED21
4   chr12   27062089       27232159     NM_016551        TM7SF3
5   chr12   27062089       27232159     NM_018164          ASUN
6   chr14   21679013       21991349  NM_001163380         RAB2B
7   chr14   21679013       21991349  NM_001170629          CHD8
8   chr14   21679013       21991349  NM_001303523          TOX4
9   chr14   21679013       21991349     NM_007192       SUPT16H
10  chr14   21679013       21991349     NM_019852        METTL3
11  chr14   21679013       21991349     NM_020366       RPGRIP1
13  chr14   21679013       21991349     NM_031314        HNRNPC
15  chr14   21679013       21991349     NR_002916        SNORD8
16  chr14   21679013       21991349     NR_003029        SNORD9
17  chr14   21679013       21991349     NR_111966         SALL2
19  chr15   30301461       30696909  NM_001282472       GOLGA8J
20  chr15   30301461       30696909  NM_001282484       GOLGA8R
21  chr15   30301461       30696909     NM_139320      CHRFAM7A
22  chr15   30301461       30696909     NR_026771  DKFZP434L187
23  chr15   30301461       30696909     NR_026859        ULK4P3
24  chr15   30301461       30696909     NR_033933       GOLGA8T
25  chr18     557038         769989  NM_001012716        TYMSOS
26  chr18     557038         769989     NM_001071          TYMS
27  chr18     557038         769989  NM_001126123        ENOSF1
28  chr18     557038         769989  NM_001289036         CLUL1
32  chr18     557038         769989     NM_004066         CETN1
33  chr18     557038         769989     NM_005433          YES1
36   chr2   51193076       51368722  NM_001330079         NRXN1
39   chr2   51193076       51368722     NR_135237     LOC730100,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr20   14681190       14846594  NM_080676   MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   55647553       55764045     NM_014750        DLGAP5
1   chr14   55647553       55764045     NM_017943        FBXO34
3   chr15   43732193       43864618  NM_001141979       TP53BP1
4   chr15   43732193       43864618  NM_001190214       PPIP5K1
5   chr15   43732193       43864618     NM_002373         MAP1A
8   chr16   18290547       18579456  NM_001004060         NOMO2
9   chr16   18290547       18579456  NM_001282511        NPIPA8
10  chr16   18290547       18579456     NR_036140     MIR3179-1
11  chr16   18290547       18579456     NR_036142     MIR3180-2
12  chr16   18290547       18579456     NR_036144     MIR3180-3
13  chr16   18290547       18579456     NR_037442     MIR3670-1
14  chr16   18290547       18579456     NR_103772  LOC100288162
15  chr16   18290547       18579456     NR_106971     MIR6511A4
16  chr16   18290547       18579456     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   25075259       25197054  NM_001009909     LUZP2
1   chr12   86234448       86353258     NM_006183       NTS
2   chr14   21873257       22045022  NM_001005465    OR10G3
3   chr14   21873257       22045022  NM_001163380     RAB2B
4   chr14   21873257       22045022  NM_001170629      CHD8
5   chr14   21873257       22045022  NM_001303523      TOX4
6   chr14   21873257       22045022     NM_019852    METTL3
9   chr14   21873257       22045022     NR_111966     SALL2
11   chr7  118455347      119902131     NR_131960    LVCAT5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67988767       68115354  NM_001127384        CTNNA3
2   chr22   17235820       17905350  NM_001037814          GAB4
3   chr22   17235820       17905350  NM_001163079         CECR6
4   chr22   17235820       17905350  NM_001282227         CECR1
6   chr22   17235820       17905350  NM_001289905        IL17RA
7   chr22   17235820       17905350  NM_001290046         CECR2
8   chr22   17235820       17905350     NM_017829         CECR5
11  chr22   17235820       17905350     NM_175878          XKR3
13  chr22   17235820       17905350     NR_003607       HSFY1P1
14  chr22   17235820       17905350     NR_015352         CECR7
15  chr22   17235820       17905350     NR_024482     CECR5-AS1
16  chr22   17235820       17905350     NR_038398         CECR3
17  chr22   17235820       17905350     NR_103793  LOC100996342
18   chr7   64050111       64177178  NM_001282360        ZNF107
19   chr7   64050111       64177178     NR_077227  LOC100128885
21   chr7   64050111       64177178     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17188028       17820502  NM_001037814          GAB4
1   chr22   17188028       17820502  NM_001163079         CECR6
2   chr22   17188028       17820502  NM_001282227         CECR1
4   chr22   17188028       17820502  NM_001289905        IL17RA
5   chr22   17188028       17820502     NM_017829         CECR5
8   chr22   17188028       17820502     NM_175878          XKR3
10  chr22   17188028       17820502     NR_003607       HSFY1P1
11  chr22   17188028       17820502     NR_015352         CECR7
12  chr22   17188028       17820502     NR_024482     CECR5-AS1
13  chr22   17188028       17820502     NR_038398         CECR3
14  chr22   17188028       17820502     NR_103793  LOC100996342
15  chr22   17188028       17820502     NR_134584  LOC101929350
16   chr9   41928151       42078872     NR_003670        FGF7P3
17   chr9   41928151       42078872     NR_015363         GLIDR
20   chr9   41928151       42078872     NR_126048  LOC102724238
21   chr9   41928151       42078872     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48260547       49144755  NM_001004702         OR4C3
1   chr11   48260547       49144755  NM_001004725         OR4S1
2   chr11   48260547       49144755  NM_001004726         OR4X1
3   chr11   48260547       49144755  NM_001004727         OR4X2
4   chr11   48260547       49144755  NM_001005512        OR4A47
5   chr11   48260547       49144755  NM_001005513        OR4C45
6   chr11   48260547       49144755  NM_001206626       TRIM49B
7   chr11   48260547       49144755  NM_001206631       TRIM64C
8    chr2   77948673       78062361     NR_110288  LOC101927967
9   chr20   14836121       15243998  NM_001033087       MACROD2
11  chr20   14836121       15243998     NR_037841   MACROD2-AS1
13   chr9   12005924       13754445     NM_000550         TYRP1
14   chr9   12005924       13754445  NM_001261407          MPDZ
16   chr9   12005924       13754445     NM_203403       LURAP1L
17   chr9   12005924       13754445     NR_033863      FLJ41200
18   chr9   12005924       13754445     NR_125775   LURAP1L-AS1
19   chr9   12005924       13754445     NR_132976      SNORD137,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr20   14645382       14811564     NM_080676   MACROD2
1   chr3   60216333       60534598  NM_001320899      FHIT
2   chr9   28622810       28932551  NM_001258282    LINGO2
4   chr9   28622810       28932551     NR_030597    MIR876
5   chr9   28622810       28932551     NR_030618    MIR873,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  142387791      142985198     NR_046228    ANKRD20A12P
1   chr16   29504675       30334890     NM_000034          ALDOA
2   chr16   29504675       30334890  NM_001014999          SLX1A
3   chr16   29504675       30334890  NM_001017390        SULT1A4
4   chr16   29504675       30334890  NM_001030288            SPN
5   chr16   29504675       30334890  NM_001031827          BOLA2
6   chr16   29504675       30334890  NM_001040056          MAPK3
7   chr16   29504675       30334890  NM_001083613        TMEM219
8   chr16   29504675       30334890  NM_001109659       C16orf92
10  chr16   29504675       30334890  NM_001114099         SEZ6L2
12  chr16   29504675       30334890  NM_001145524          YPEL3
13  chr16   29504675       30334890  NM_001193333         CORO1A
15  chr16   29504675       30334890  NM_001256269          KIF22
17  chr16   29504675       30334890  NM_001256443          PRRT2
18  chr16   29504675       30334890  NM_001276275            MAZ
19  chr16   29504675       30334890  NM_001282062          DOC2A
22  chr16   29504675       30334890  NM_001286585          CDIPT
23  chr16   29504675       30334890  NM_001293204            MVP
24  chr16   29504675       30334890  NM_001303507          PPP4C
25  chr16   29504675       30334890  NM_001304562         INO80E
26  chr16   29504675       30334890  NM_001318249           QPRT
27  chr16   29504675       30334890  NM_001318504         FAM57B
28  chr16   29504675       30334890  NM_001321892        NPIPB13
32  chr16   29504675       30334890     NM_003609         HIRIP3
33  chr16   29504675       30334890     NM_004608           TBX6
34  chr16   29504675       30334890     NM_004783          TAOK2
37  chr16   29504675       30334890     NM_024307          GDPD3
38  chr16   29504675       30334890     NM_024516          PAGR1
41  chr16   29504675       30334890     NM_152338           ZG16
42  chr16   29504675       30334890     NM_175900       C16orf54
43  chr16   29504675       30334890     NM_178863         KCTD13
44  chr16   29504675       30334890     NM_181718         ASPHD1
46  chr16   29504675       30334890     NR_002453         SMG1P5
47  chr16   29504675       30334890     NR_002454      LOC606724
48  chr16   29504675       30334890     NR_002556      LOC388242
49  chr16   29504675       30334890     NR_015396      CDIPT-AS1
51  chr16   29504675       30334890     NR_037608  SLX1A-SULT1A3
52  chr16   29504675       30334890     NR_049833      MIR3680-2
54  chr16   29504675       30334890     NR_135192   LOC101928595
56  chr16   29504675       30334890     NR_135305         SMG1P2
58  chr17   21300056       22268504  NM_001113434       C17orf51
59  chr17   21300056       22268504  NM_001190452       MTRNR2L1
60  chr17   21300056       22268504  NM_001194958         KCNJ18
61  chr17   21300056       22268504     NM_021012         KCNJ12
62  chr17   21300056       22268504     NR_027084       FLJ36000
63  chr17   21300056       22268504     NR_028336        FAM27E5
64   chr2  110202788      110312757  NM_001099289         SH3RF3
65   chr2  110202788      110312757  NM_001321504         SEPT10,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   23418833       23570556     NR_107021       MIR8054
1   chr11   31242584       31368751     NM_181807         DCDC1
2   chr14   21758792       22255829  NM_001001912         OR4E2
3   chr14   21758792       22255829  NM_001005465        OR10G3
4   chr14   21758792       22255829  NM_001005466        OR10G2
5   chr14   21758792       22255829  NM_001163380         RAB2B
6   chr14   21758792       22255829  NM_001170629          CHD8
7   chr14   21758792       22255829  NM_001303523          TOX4
8   chr14   21758792       22255829  NM_001317107         OR4E1
9   chr14   21758792       22255829     NM_007192       SUPT16H
10  chr14   21758792       22255829     NM_019852        METTL3
11  chr14   21758792       22255829     NM_020366       RPGRIP1
14  chr14   21758792       22255829     NR_002916        SNORD8
15  chr14   21758792       22255829     NR_003029        SNORD9
16  chr14   21758792       22255829     NR_111966         SALL2
18  chr16   14987722       15155085  NM_001270767         NTAN1
19  chr16   14987722       15155085  NM_001285445        PDXDC1
24  chr16   14987722       15155085  NM_001301064          RRN3
26  chr16   14987722       15155085     NM_006985        NPIPA1
27  chr16   14987722       15155085     NM_014287         NOMO1
28  chr16   14987722       15155085     NR_036140     MIR3179-1
29  chr16   14987722       15155085     NR_036141     MIR3180-1
30  chr16   14987722       15155085     NR_036142     MIR3180-2
31  chr16   14987722       15155085     NR_103772  LOC100288162
32  chr16   14987722       15155085     NR_106970     MIR6511A3
33  chr16   14987722       15155085     NR_107060     MIR6770-2
34  chr16   14987722       15155085     NR_128713     MIR3670-4
35  chr18   67809571       67926431  NM_001318520          RTTN
36   chr2   26580600       26976048  NM_001029881          CIB4
37   chr2   26580600       26976048  NM_001105519       C2orf70
38   chr2   26580600       26976048     NM_002246         KCNK3
39   chr2   26580600       26976048     NM_004802          OTOF
40   chr2   26580600       26976048     NM_033505       SELENOI
41   chr2   26580600       26976048     NM_145038          DRC1
43   chr9    9839819        9983426     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21754610       22163475  NM_001001912         OR4E2
1   chr14   21754610       22163475  NM_001005465        OR10G3
2   chr14   21754610       22163475  NM_001005466        OR10G2
3   chr14   21754610       22163475  NM_001163380         RAB2B
4   chr14   21754610       22163475  NM_001170629          CHD8
5   chr14   21754610       22163475  NM_001303523          TOX4
6   chr14   21754610       22163475  NM_001317107         OR4E1
7   chr14   21754610       22163475     NM_007192       SUPT16H
8   chr14   21754610       22163475     NM_019852        METTL3
9   chr14   21754610       22163475     NM_020366       RPGRIP1
12  chr14   21754610       22163475     NR_002916        SNORD8
13  chr14   21754610       22163475     NR_003029        SNORD9
14  chr14   21754610       22163475     NR_111966         SALL2
16  chr20   14793062       15027453     NM_080676       MACROD2
17  chr20   14793062       15027453     NR_037841   MACROD2-AS1
19  chr20   14804289       15247152  NM_001033087       MACROD2
21  chr20   14804289       15247152     NR_037841   MACROD2-AS1
23  chr21   22665385       22775657     NM_004540         NCAM2
24  chr22   20134495       20471585  NM_001242313      TMEM191B
25  chr22   20134495       20471585  NM_001243537       CCDC188
26  chr22   20134495       20471585     NM_013373        ZDHHC8
27  chr22   20134495       20471585     NM_015672        RIMBP3
28  chr22   20134495       20471585     NM_023004         RTN4R
29  chr22   20134495       20471585     NM_033257        DGCR6L
30  chr22   20134495       20471585     NR_003563       PI4KAP1
31  chr22   20134495       20471585     NR_026919     LINC00896
32  chr22   20134495       20471585     NR_031618       MIR1286
33  chr22   20134495       20471585     NR_038460     LOC284865
34  chr22   20134495       20471585     NR_136560       FAM230A
35  chr22   20134495       20471585     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11    4814606        4916939  NM_001004753         OR51F2
1   chr11    4814606        4916939  NM_001004758         OR51S1
2   chr11    4814606        4916939  NM_001004759         OR51T1
3   chr11    4814606        4916939  NM_001005177         OR52R1
4   chr16   28679004       29760163  NM_001014989            LAT
5   chr16   28679004       29760163  NM_001014999          SLX1A
6   chr16   28679004       29760163  NM_001017390        SULT1A4
7   chr16   28679004       29760163  NM_001030288            SPN
8   chr16   28679004       29760163  NM_001031827          BOLA2
9   chr16   28679004       29760163  NM_001142448          SPNS1
10  chr16   28679004       29760163  NM_001145795          SH2B1
12  chr16   28679004       29760163  NM_001199142          EIF3C
13  chr16   28679004       29760163  NM_001286075         ATP2A1
15  chr16   28679004       29760163  NM_001287251         NPIPB9
17  chr16   28679004       29760163  NM_001310137        NPIPB11
18  chr16   28679004       29760163  NM_001317856         EIF3CL
19  chr16   28679004       29760163  NM_001318249           QPRT
20  chr16   28679004       29760163  NM_001320622   BOLA2-SMG1P6
22  chr16   28679004       29760163     NM_001770           CD19
24  chr16   28679004       29760163     NM_003321           TUFM
28  chr16   28679004       29760163     NM_024816         RABEP2
29  chr16   28679004       29760163     NM_032815       NFATC2IP
30  chr16   28679004       29760163     NM_148416         ATXN2L
31  chr16   28679004       29760163     NM_175900       C16orf54
32  chr16   28679004       29760163     NR_002454      LOC606724
33  chr16   28679004       29760163     NR_002556      LOC388242
34  chr16   28679004       29760163     NR_002939        SNX29P2
35  chr16   28679004       29760163     NR_003369         RRN3P2
36  chr16   28679004       29760163     NR_037608  SLX1A-SULT1A3
37  chr16   28679004       29760163     NR_039742        MIR4517
38  chr16   28679004       29760163     NR_039872        MIR4721
39  chr16   28679004       29760163     NR_046287     ATP2A1-AS1
40  chr16   28679004       29760163     NR_049833      MIR3680-2
41  chr16   28679004       29760163     NR_107058      MIR6862-2
43  chr16   28679004       29760163     NR_135305         SMG1P2
44  chr16   28679004       29760163     NR_135312         SMG1P6
46  chr16   68743197       68845907  NM_001317184           CDH1
47  chr16   68743197       68845907     NR_106988      MIR7641-2
48  chr22   32403827       32539864     NM_000343         SLC5A1
50  chr22   32403827       32539864     NR_040114        AP1B1P1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21752427       22135217  NM_001001912      OR4E2
1   chr14   21752427       22135217  NM_001005465     OR10G3
2   chr14   21752427       22135217  NM_001005466     OR10G2
3   chr14   21752427       22135217  NM_001163380      RAB2B
4   chr14   21752427       22135217  NM_001170629       CHD8
5   chr14   21752427       22135217  NM_001303523       TOX4
6   chr14   21752427       22135217     NM_007192    SUPT16H
7   chr14   21752427       22135217     NM_019852     METTL3
8   chr14   21752427       22135217     NM_020366    RPGRIP1
11  chr14   21752427       22135217     NR_002916     SNORD8
12  chr14   21752427       22135217     NR_003029     SNORD9
13  chr14   21752427       22135217     NR_111966      SALL2
15  chr14   21857327       23398118  NM_001001912      OR4E2
16  chr14   21857327       23398118  NM_001005465     OR10G3
17  chr14   21857327       23398118  NM_001005466     OR10G2
18  chr14   21857327       23398118  NM_001039619      PRMT5
19  chr14   21857327       23398118  NM_001126105     SLC7A7
21  chr14   21857327       23398118  NM_001163380      RAB2B
22  chr14   21857327       23398118  NM_001170629       CHD8
23  chr14   21857327       23398118  NM_001303523       TOX4
24  chr14   21857327       23398118  NM_001317107      OR4E1
25  chr14   21857327       23398118  NM_001318870     MRPL52
26  chr14   21857327       23398118  NM_001329226      LRP10
27  chr14   21857327       23398118     NM_001344       DAD1
28  chr14   21857327       23398118     NM_004995      MMP14
29  chr14   21857327       23398118     NM_005015      OXA1L
30  chr14   21857327       23398118     NM_018107      RBM23
31  chr14   21857327       23398118     NM_019852     METTL3
33  chr14   21857327       23398118     NM_022060      ABHD4
35  chr14   21857327       23398118     NM_173527       REM2
36  chr14   21857327       23398118     NR_002916     SNORD8
37  chr14   21857327       23398118     NR_003029     SNORD9
39  chr14   21857327       23398118     NR_111966      SALL2
41  chr14   21857327       23398118     NR_120599  PRMT5-AS1
42   chr6  162517742      162688396     NM_013988      PARK2
43   chr7  110523951      110784280  NM_001099658      LRRN3
44   chr7  110523951      110784280  NM_001244606     IMMP2L
46   chr7  118455631      119745294     NR_131960     LVCAT5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   78965804       79303476     NM_000959         PTGFR
1    chr1   78965804       79303476     NM_006417         IFI44
2    chr1   78965804       79303476     NM_006820        IFI44L
4    chr1  143716759      144045566  NM_001123068       PPIAL4G
5    chr1  143716759      144045566  NM_001287385        FAM72C
6    chr1  143716759      144045566  NM_001345942        FAM72D
10   chr1  143716759      144045566     NR_104014     LINC01138
11   chr1  143716759      144045566     NR_111930  LOC100132057
13   chr1  241526303      241807063     NM_000143            FH
14   chr1  241526303      241807063     NM_001821          CHML
15   chr1  241526303      241807063     NM_003679           KMO
16   chr1  241526303      241807063     NM_014322          OPN3
17  chr13   22439933       22729809     NR_047040     LINC00424,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12761646       12911530  NM_001013631      HNRNPCL1
1    chr1   12761646       12911530  NM_001080830      PRAMEF12
2    chr1   12761646       12911530  NM_001103170       AADACL3
3    chr1   12761646       12911530  NM_001146181      HNRNPCL3
4    chr1   12761646       12911530  NM_001146344      PRAMEF11
5    chr1   12761646       12911530  NM_001294139       PRAMEF1
6    chr1   12761646       12911530  NM_001302551      HNRNPCL4
8    chr1   12761646       12911530     NM_152290      C1orf158
9    chr1   12838269       13109265  NM_001009611       PRAMEF4
10   chr1   12838269       13109265  NM_001010889       PRAMEF6
11   chr1   12838269       13109265  NM_001010890       PRAMEF9
12   chr1   12838269       13109265  NM_001012276       PRAMEF8
13   chr1   12838269       13109265  NM_001013407       PRAMEF5
14   chr1   12838269       13109265  NM_001013631      HNRNPCL1
15   chr1   12838269       13109265  NM_001099850      PRAMEF18
16   chr1   12838269       13109265  NM_001100631      PRAMEF22
17   chr1   12838269       13109265  NM_001146181      HNRNPCL3
18   chr1   12838269       13109265  NM_001146344      PRAMEF11
19   chr1   12838269       13109265  NM_001294139       PRAMEF1
20   chr1   12838269       13109265  NM_001302551      HNRNPCL4
21   chr1   12838269       13109265  NM_001306072      PRAMEF26
22   chr1   12838269       13109265  NM_001310134      PRAMEF25
24   chr1   12838269       13109265     NM_023014       PRAMEF2
25  chr14   21583157       21773795  NM_001004731        OR5AU1
26  chr14   21583157       21773795     NM_020366       RPGRIP1
27  chr14   21583157       21773795     NM_031314        HNRNPC
28  chr14   21583157       21773795     NR_038970     LINC00641
30  chr14   21774524       22118974  NM_001005465        OR10G3
31  chr14   21774524       22118974  NM_001005466        OR10G2
32  chr14   21774524       22118974  NM_001163380         RAB2B
33  chr14   21774524       22118974  NM_001170629          CHD8
34  chr14   21774524       22118974  NM_001303523          TOX4
35  chr14   21774524       22118974     NM_007192       SUPT16H
36  chr14   21774524       22118974     NM_019852        METTL3
37  chr14   21774524       22118974     NM_020366       RPGRIP1
40  chr14   21774524       22118974     NR_002916        SNORD8
41  chr14   21774524       22118974     NR_003029        SNORD9
42  chr14   21774524       22118974     NR_111966         SALL2
44   chr2  242478771      242608211  NM_001164356         THAP4
46   chr2  242478771      242608211     NM_032515           BOK
47   chr2  242478771      242608211     NM_178326         ATG4B
48   chr2  242478771      242608211     NR_033346       BOK-AS1
49   chr4   30647511       31294421  NM_001173523         PCDH7
52   chr4   30647511       31294421     NR_125935  LOC102723778,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21885418       22359424  NM_001001912      OR4E2
1   chr14   21885418       22359424  NM_001005465     OR10G3
2   chr14   21885418       22359424  NM_001005466     OR10G2
3   chr14   21885418       22359424  NM_001163380      RAB2B
4   chr14   21885418       22359424  NM_001170629       CHD8
5   chr14   21885418       22359424  NM_001303523       TOX4
6   chr14   21885418       22359424  NM_001317107      OR4E1
7   chr14   21885418       22359424     NM_019852     METTL3
10  chr14   21885418       22359424     NR_111966      SALL2
12  chr15   20948956       21120639  NM_001277303     POTEB2
13  chr15   20948956       21120639     NM_207355     POTEB3
14  chr15   20948956       21120639     NR_027992     NBEAP1
15  chr15   20948956       21120639     NR_036062  MIR3118-2
17   chr4   30645155       30877883  NM_001173523      PCDH7
20   chr5   17725706       17873526     NR_134286  LOC646241
22   chr8  100607467      100818388     NM_017890     VPS13B,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr14   21790071       21904689  NM_001170629            CHD8
1   chr14   21790071       21904689     NM_007192         SUPT16H
2   chr14   21790071       21904689     NM_020366         RPGRIP1
4   chr14   21790071       21904689     NR_002916          SNORD8
5   chr14   21790071       21904689     NR_003029          SNORD9
6   chr15   43764408       44489739  NM_001018108           SERF2
7   chr15   43764408       44489739  NM_001141979         TP53BP1
8   chr15   43764408       44489739  NM_001167941           WDR76
9   chr15   43764408       44489739  NM_001190214         PPIP5K1
13  chr15   43764408       44489739  NM_001199885            HYPK
14  chr15   43764408       44489739  NM_001258031         SERINC4
15  chr15   43764408       44489739  NM_001282309        CATSPER2
16  chr15   43764408       44489739  NM_001286490           FRMD5
18  chr15   43764408       44489739  NM_001321927          CKMT1A
21  chr15   43764408       44489739     NM_002373           MAP1A
22  chr15   43764408       44489739     NM_005313           PDIA3
24  chr15   43764408       44489739     NM_005926           MFAP1
26  chr15   43764408       44489739     NM_020990          CKMT1B
27  chr15   43764408       44489739     NM_025165            ELL3
28  chr15   43764408       44489739     NM_153700            STRC
30  chr15   43764408       44489739     NR_002318      CATSPER2P1
31  chr15   43764408       44489739     NR_003571          PIN4P1
32  chr15   43764408       44489739     NR_031695         MIR1282
33  chr15   43764408       44489739     NR_037673  SERF2-C15ORF63,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27181821       27425099  NM_001080406      C12orf71
1   chr12   27181821       27425099  NM_001271811         MED21
2   chr12   27181821       27425099     NM_015000        STK38L
3   chr14   21819911       21931112  NM_001163380         RAB2B
4   chr14   21819911       21931112  NM_001170629          CHD8
5   chr14   21819911       21931112     NM_007192       SUPT16H
8   chr14   21819911       21931112     NR_002916        SNORD8
9   chr14   21819911       21931112     NR_003029        SNORD9
10  chr17   78154490       78305970     NM_000199          SGSH
11  chr17   78154490       78305970  NM_001166349      SLC26A11
12  chr17   78154490       78305970  NM_001256071        RNF213
13  chr17   78154490       78305970  NM_001257970        CARD14
18  chr22   17228711       17339852     NM_175878          XKR3
19  chr22   17228711       17339852     NR_003607       HSFY1P1
20  chr22   17228711       17339852     NR_134584  LOC101929350
21   chr3    4256937        5660709  NM_001164675         SUMF1
22   chr3    4256937        5660709  NM_001168272         ITPR1
23   chr3    4256937        5660709  NM_001243723        SETMAR
25   chr3    4256937        5660709     NM_003670       BHLHE40
26   chr3    4256937        5660709     NM_014674         EDEM1
27   chr3    4256937        5660709     NM_018184         ARL8B
28   chr3    4256937        5660709     NR_004428          EGOT
29   chr3    4256937        5660709     NR_037903   BHLHE40-AS1
30   chr3    4256937        5660709     NR_039953       MIR4790
31   chr3    4256937        5660709     NR_108075     ITPR1-AS1
33   chr4   93734973       94250184     NM_001510         GRID2
34   chr6  161926330      162100575     NM_013988         PARK2
35   chr7   64104478       64246201  NM_001282360        ZNF107
37   chr7   64104478       64246201     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18335700       18794007  NM_001004060         NOMO2
1   chr16   18335700       18794007  NM_001282511        NPIPA8
2   chr16   18335700       18794007     NR_003569       ABCC6P1
3   chr16   18335700       18794007     NR_036140     MIR3179-1
4   chr16   18335700       18794007     NR_036142     MIR3180-2
5   chr16   18335700       18794007     NR_036144     MIR3180-3
6   chr16   18335700       18794007     NR_037442     MIR3670-1
7   chr16   18335700       18794007     NR_103772  LOC100288162
8   chr16   18335700       18794007     NR_106971     MIR6511A4
9   chr16   18335700       18794007     NR_107060     MIR6770-2
10  chr16   21499463       21630433  NM_001077180        METTL9
12  chr16   21499463       21630433     NR_002594      SLC7A5P2
13  chr16   21499463       21630433     NR_027155        SMG1P3
14  chr16   21499463       21630433     NR_049833     MIR3680-2
15  chr16   21499463       21630433     NR_110930  LOC101927814
16   chr7  110506351      110741255  NM_001099658         LRRN3
17   chr7  110506351      110741255  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21906031       22048755  NM_001005465     OR10G3
1   chr14   21906031       22048755  NM_001163380      RAB2B
2   chr14   21906031       22048755  NM_001303523       TOX4
3   chr14   21906031       22048755     NM_019852     METTL3
5   chr14   21906031       22048755     NR_111966      SALL2
7   chr18   14706216       14970800  NM_001145029   ANKRD30B
8   chr18   14706216       14970800     NR_036153  MIR3156-2
9   chr18   14706216       14970800     NR_104164  LINC01443
10  chr18   14706216       14970800     NR_110783  LINC01444
11  chr18   61788103       61904963     NR_027245  LINC00305
12  chr18   61788103       61904963     NR_033881  LOC284294
13  chr18   61788103       61904963     NR_033983  LINC01538
14   chr2   75935637       76105183  NM_001201334      GCFC2
17   chr2  133768785      133992839     NM_207363     NCKAP5
18   chr6   91043597       91240716     NM_145332     MAP3K7
19   chr7   21442823       21758763  NM_001277115     DNAH11
20   chr7   21442823       21758763  NM_001326542        SP4
21   chr7   21442823       21758763     NR_031594    MIR1183
23   chr7   21361769       21784778  NM_001277115     DNAH11
24   chr7   21361769       21784778  NM_001326542        SP4
25   chr7   21361769       21784778     NR_031594    MIR1183
27   chr7  123452476      123595885  NM_001174044      SPAM1
30   chr7  123452476      123595885     NM_012269      HYAL4
31   chr7  123452476      123595885     NR_002731     HYALP1
32   chr9    6567842        6967418     NM_000170       GLDC
33   chr9    6567842        6967418  NM_001146695      KDM4C
38   chr9   14974184       15106550     NR_003920  LOC389705
39   chr9   28570487       28689377  NM_001258282     LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16336952       16529484  NM_001004067         NOMO3
1   chr16   16336952       16529484  NM_001282511        NPIPA8
2   chr16   16336952       16529484     NR_036140     MIR3179-1
3   chr16   16336952       16529484     NR_036141     MIR3180-1
4   chr16   16336952       16529484     NR_036142     MIR3180-2
5   chr16   16336952       16529484     NR_036447        PKD1P1
6   chr16   16336952       16529484     NR_103772  LOC100288162
7   chr16   16336952       16529484     NR_106766     MIR6511A1
8   chr16   16336952       16529484     NR_106971     MIR6511A4
9   chr16   16336952       16529484     NR_107060     MIR6770-2
10  chr16   16336952       16529484     NR_128713     MIR3670-4
11   chr2  133619409      133748367     NM_207363        NCKAP5
12   chr2  133619409      133748367     NR_135572  LOC101928185
13   chr7   63891803       64023661  NM_001130022        ZNF680
15   chr7   63891803       64023661     NR_029404       YWHAEP1
16   chr9   31293209       31446162     NR_135134     LINC01243,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16377307       16493799  NM_001004067         NOMO3
1   chr16   16377307       16493799  NM_001282511        NPIPA8
2   chr16   16377307       16493799     NR_036140     MIR3179-1
3   chr16   16377307       16493799     NR_036141     MIR3180-1
4   chr16   16377307       16493799     NR_036142     MIR3180-2
5   chr16   16377307       16493799     NR_036447        PKD1P1
6   chr16   16377307       16493799     NR_103772  LOC100288162
7   chr16   16377307       16493799     NR_106766     MIR6511A1
8   chr16   16377307       16493799     NR_106971     MIR6511A4
9   chr16   16377307       16493799     NR_107060     MIR6770-2
10  chr16   16377307       16493799     NR_128713     MIR3670-4
11   chr6  162692345      162951876     NM_013988         PARK2
12   chr9  102072573      102846650     NM_015051         ERP44
13   chr9  102072573      102846650     NM_017919         STX17
14   chr9  102072573      102846650     NM_173199         NR4A3
16   chr9  102072573      102846650     NR_038853     STX17-AS1
17   chr9  102072573      102846650     NR_102270          NAMA
18   chr9  102072573      102846650     NR_109802  LOC101928438,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143065800      143238721     NR_110761  LOC102723769
1   chr12  128588907      128718090     NR_104647  LOC100996679
2   chr12  128588907      128718090     NR_104648  LOC101927694
3   chr15   28594146       29091986  NM_001282468       GOLGA8M
4   chr15   28594146       29091986     NR_026589       WHAMMP2
5   chr15   28594146       29091986     NR_033351       GOLGA8F
7   chr15   28594146       29091986     NR_033353       GOLGA8G
9   chr15   28594146       29091986     NR_036443       HERC2P9
10  chr15   28594146       29091986     NR_036475  LOC100289656
11  chr15   28594146       29091986     NR_037599     PDCD6IPP2
12  chr15   28594146       29091986     NR_039734     MIR4509-3
14  chr15   28594146       29091986     NR_047567     GOLGA6L7P
15   chr5   17389259       17723247     NR_134270  LOC102723526
17   chr5   17389259       17723247     NR_134273  LOC101929544
20   chr7    6760889        7088831  NM_001099697      RSPH10B2
21   chr7    6760889        7088831     NM_198097         CCZ1B
22   chr7    6760889        7088831     NR_002217        PMS2CL
23   chr7  110688822      110801559  NM_001099658         LRRN3
24   chr7  110688822      110801559  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27200296       27313748  NM_001080406      C12orf71
1   chr14   21750373       22023786  NM_001163380         RAB2B
2   chr14   21750373       22023786  NM_001170629          CHD8
3   chr14   21750373       22023786  NM_001303523          TOX4
4   chr14   21750373       22023786     NM_007192       SUPT16H
5   chr14   21750373       22023786     NM_019852        METTL3
6   chr14   21750373       22023786     NM_020366       RPGRIP1
9   chr14   21750373       22023786     NR_002916        SNORD8
10  chr14   21750373       22023786     NR_003029        SNORD9
11  chr14   21750373       22023786     NR_111966         SALL2
13  chr21   29443534       30738812     NM_001186         BACH1
14  chr21   29443534       30738812  NM_001286619      MAP3K7CL
18  chr21   29443534       30738812  NM_001320724        RWDD2B
19  chr21   29443534       30738812  NM_001320766          LTN1
20  chr21   29443534       30738812     NM_006447         USP16
21  chr21   29443534       30738812     NM_006585          CCT8
22  chr21   29443534       30738812     NM_013240        N6AMT1
27  chr21   29443534       30738812     NR_026552     LINC00161
28  chr21   29443534       30738812     NR_027072     LINC00189
31  chr21   29443534       30738812     NR_126010     LOC284825
33  chr21   29443534       30738812     NR_126012  LOC101927973
34   chr4  128734494      128895917  NM_001190801          PLK4
35   chr4  128734494      128895917  NM_001317381        HSPA4L
38   chr4  128734494      128895917  NM_001319305        ABHD18
40   chr4  128734494      128895917     NM_152778         MFSD8
41   chr7   89234304       90669794  NM_001040665        STEAP2
43   chr7   89234304       90669794  NM_001160138        CFAP69
44   chr7   89234304       90669794  NM_001185073        CLDN12
46   chr7   89234304       90669794  NM_001287135         CDK14
49   chr7   89234304       90669794     NM_012449        STEAP1
50   chr7   89234304       90669794     NM_033107       GTPBP10
51   chr7   89234304       90669794     NR_003551     DPY19L2P4
52   chr7   89234304       90669794     NR_102424  LOC101409256
53   chr7   89234304       90669794     NR_110029    STEAP2-AS1
54   chr7   89234304       90669794     NR_110085  LOC101927446,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  128523824      128893083  NM_001136103      TMEM132C
1   chr12  128523824      128893083     NR_037406       MIR3612
2   chr12  128523824      128893083     NR_039720      MIR4419B
3   chr12  128523824      128893083     NR_104647  LOC100996679
4   chr12  128523824      128893083     NR_104648  LOC101927694
5   chr13   80815015       81073545  NM_001318536         SPRY2
8   chr22   18998261       19123276  NM_001184781         DGCR2
9   chr22   18998261       19123276     NM_022719        DGCR14
10  chr22   18998261       19123276     NM_053006         TSSK2
11  chr22   18998261       19123276     NR_024157        DGCR11
12  chr22   18998261       19123276     NR_024159         DGCR9
13  chr22   18998261       19123276     NR_026651        DGCR10
14  chr22   18998261       19123276     NR_110533         DGCR5
15  chr22   20091279       20747892  NM_001190326         DGCR8
16  chr22   20091279       20747892  NM_001242313      TMEM191B
17  chr22   20091279       20747892  NM_001243537       CCDC188
18  chr22   20091279       20747892  NM_001278639        RANBP1
21  chr22   20091279       20747892     NM_013373        ZDHHC8
22  chr22   20091279       20747892     NM_015672        RIMBP3
23  chr22   20091279       20747892     NM_022727        TRMT2A
24  chr22   20091279       20747892     NM_023004         RTN4R
25  chr22   20091279       20747892     NM_033257        DGCR6L
26  chr22   20091279       20747892     NR_003563       PI4KAP1
27  chr22   20091279       20747892     NR_026919     LINC00896
28  chr22   20091279       20747892     NR_031618       MIR1286
29  chr22   20091279       20747892     NR_038460     LOC284865
30  chr22   20091279       20747892     NR_106874       MIR6816
31  chr22   20091279       20747892     NR_136560       FAM230A
32  chr22   20091279       20747892     NR_136569     LOC729461
33  chr22   20091279       20747892     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81472185       81607503  NM_001278495        NUTM2B
1   chr10   81472185       81607503     NR_029407     LOC642361
2   chr10   81472185       81607503     NR_120611    NUTM2B-AS1
5   chr12   16233984       16345185  NM_001170798       SLC15A5
6   chr14   21840652       23158451  NM_001001912         OR4E2
7   chr14   21840652       23158451  NM_001005465        OR10G3
8   chr14   21840652       23158451  NM_001005466        OR10G2
9   chr14   21840652       23158451  NM_001163380         RAB2B
10  chr14   21840652       23158451  NM_001170629          CHD8
11  chr14   21840652       23158451  NM_001303523          TOX4
12  chr14   21840652       23158451  NM_001317107         OR4E1
13  chr14   21840652       23158451     NM_001344          DAD1
14  chr14   21840652       23158451     NM_007192       SUPT16H
15  chr14   21840652       23158451     NM_019852        METTL3
17  chr14   21840652       23158451     NM_022060         ABHD4
19  chr14   21840652       23158451     NR_002916        SNORD8
20  chr14   21840652       23158451     NR_003029        SNORD9
21  chr14   21840652       23158451     NR_111966         SALL2
23  chr21   44824207       44949752  NM_001320643  LOC102724428
24  chr21   44824207       44949752     NM_007031        HSF2BP
25  chr21   44824207       44949752     NM_173354          SIK1
26  chr21   44824207       44949752     NR_026863     LINC00313
27  chr21   44824207       44949752     NR_026960     LINC00319
28  chr21   44824207       44949752     NR_136540  LOC102724354
29   chr7   64088850       64207476  NM_001282360        ZNF107
31   chr7   64088850       64207476     NR_106898       MIR6839
32   chr9   28522044       28715709  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  102416296      102701869     NR_110211      OLFM3
1   chr16   29539137       29726080  NM_001030288        SPN
2   chr16   29539137       29726080  NM_001318249       QPRT
4   chr16   29539137       29726080     NR_049833  MIR3680-2
5   chr16   29539137       29726080     NR_135305     SMG1P2
7   chr22   17269037       17413696     NM_175878       XKR3
8   chr22   17269037       17413696     NR_003607    HSFY1P1
9   chr22   19913648       20025310     NM_000754       COMT
12  chr22   19913648       20025310  NM_001282512     TXNRD2
13  chr22   19913648       20025310  NM_001283116     TANGO2
16  chr22   19913648       20025310     NM_001670      ARVCF
19  chr22   19913648       20025310     NR_029706     MIR185
20  chr22   19913648       20025310     NR_039918    MIR4761,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17251984       17530109  NM_001037814          GAB4
1   chr22   17251984       17530109     NM_175878          XKR3
2   chr22   17251984       17530109     NR_003607       HSFY1P1
3   chr22   17251984       17530109     NR_015352         CECR7
4   chr22   17236954       18235328  NM_001037814          GAB4
5   chr22   17236954       18235328  NM_001163079         CECR6
6   chr22   17236954       18235328  NM_001244567           BID
9   chr22   17236954       18235328  NM_001270733       BCL2L13
10  chr22   17236954       18235328  NM_001282227         CECR1
12  chr22   17236954       18235328  NM_001288707  LOC101929372
13  chr22   17236954       18235328  NM_001289905        IL17RA
14  chr22   17236954       18235328  NM_001290046         CECR2
16  chr22   17236954       18235328  NM_001303484      SLC25A18
17  chr22   17236954       18235328     NM_001696      ATP6V1E1
19  chr22   17236954       18235328     NM_017829         CECR5
22  chr22   17236954       18235328     NM_175878          XKR3
24  chr22   17236954       18235328     NR_003607       HSFY1P1
25  chr22   17236954       18235328     NR_015352         CECR7
26  chr22   17236954       18235328     NR_024482     CECR5-AS1
27  chr22   17236954       18235328     NR_038398         CECR3
29  chr22   17236954       18235328     NR_103793  LOC100996342
30   chr5   20459294       20636158  NM_001291956         CDH18
31   chr9   88427532       88643607  NM_001321881         NAA35
33   chr9   88427532       88643607     NM_016548         GOLM1
36   chr9   88427532       88643607     NR_029410     LOC389765,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152456580      152586150     NM_019060         CRCT1
1    chr1  152456580      152586150     NM_032563         LCE3D
2    chr1  152456580      152586150     NM_178434         LCE3C
3    chr1  152456580      152586150     NM_178435         LCE3E
4    chr1  152456580      152586150     NM_178438         LCE5A
5   chr11   48314593       48512128  NM_001004702         OR4C3
6   chr11   48314593       48512128  NM_001004725         OR4S1
7   chr11   48314593       48512128  NM_001005512        OR4A47
8   chr11   48314593       48512128  NM_001005513        OR4C45
9   chr14   21808782       22119303  NM_001005465        OR10G3
10  chr14   21808782       22119303  NM_001005466        OR10G2
11  chr14   21808782       22119303  NM_001163380         RAB2B
12  chr14   21808782       22119303  NM_001170629          CHD8
13  chr14   21808782       22119303  NM_001303523          TOX4
14  chr14   21808782       22119303     NM_007192       SUPT16H
15  chr14   21808782       22119303     NM_019852        METTL3
16  chr14   21808782       22119303     NM_020366       RPGRIP1
19  chr14   21808782       22119303     NR_002916        SNORD8
20  chr14   21808782       22119303     NR_003029        SNORD9
21  chr14   21808782       22119303     NR_111966         SALL2
23  chr18   14665234       14851678  NM_001145029      ANKRD30B
24  chr18   14665234       14851678     NR_036153     MIR3156-2
25  chr19   21639366       21748994  NM_001001415        ZNF429
26  chr19   21639366       21748994     NR_037194     LINC00664
27   chr2  108777580      109580812  NM_001008743       SULT1C3
28   chr2  108777580      109580812     NM_001056       SULT1C2
29   chr2  108777580      109580812  NM_001193482         LIMS1
34   chr2  108777580      109580812  NM_001303106       CCDC138
37   chr2  108777580      109580812     NM_006267        RANBP2
38   chr2  108777580      109580812     NM_006588       SULT1C4
39   chr2  108777580      109580812     NM_022336          EDAR
40   chr2  108777580      109580812     NR_028063          GCC2
41   chr2  108777580      109580812     NR_037191     SULT1C2P1
42   chr2  108777580      109580812     NR_131251     LINC01594
43   chr2  108777580      109580812     NR_135290      GCC2-AS1
44  chr21   13550341       14936803     NR_026916    ANKRD30BP2
45  chr21   13550341       14936803     NR_036164     MIR3156-3
46  chr21   13550341       14936803     NR_110544  LOC102724188
47   chr5  127783321      128080981     NM_001999          FBN2
48   chr8   15297571       15588476     NM_006765         TUSC3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18376020       18797172  NM_001004060         NOMO2
1   chr16   18376020       18797172     NM_001019        RPS15A
2   chr16   18376020       18797172  NM_001282511        NPIPA8
3   chr16   18376020       18797172     NR_003569       ABCC6P1
4   chr16   18376020       18797172     NR_036140     MIR3179-1
5   chr16   18376020       18797172     NR_036142     MIR3180-2
6   chr16   18376020       18797172     NR_036144     MIR3180-3
7   chr16   18376020       18797172     NR_037442     MIR3670-1
8   chr16   18376020       18797172     NR_103772  LOC100288162
9   chr16   18376020       18797172     NR_106971     MIR6511A4
10  chr16   18376020       18797172     NR_107060     MIR6770-2
11   chr2   25044558       25152651  NM_001320613         ADCY3
12   chr2   25044558       25152651  NM_001322101         CENPO
13   chr2   50818628       50941123  NM_001330082         NRXN1
14   chr2   50818628       50941123     NR_130470       MIR8485
15   chr4  165929740      166070125  NM_001100389       TMEM192
16   chr4  165929740      166070125     NM_152620        TRIM60,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   71440524       71651936     NM_004616    TSPAN8
1   chr14   21793249       21976760  NM_001163380     RAB2B
2   chr14   21793249       21976760  NM_001170629      CHD8
3   chr14   21793249       21976760  NM_001303523      TOX4
4   chr14   21793249       21976760     NM_007192   SUPT16H
5   chr14   21793249       21976760     NM_019852    METTL3
6   chr14   21793249       21976760     NM_020366   RPGRIP1
9   chr14   21793249       21976760     NR_002916    SNORD8
10  chr14   21793249       21976760     NR_003029    SNORD9
11   chr7   88942164       89067728     NM_181646   ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16375501       16690355  NM_001004067         NOMO3
1   chr16   16375501       16690355  NM_001282511        NPIPA8
2   chr16   16375501       16690355     NR_036140     MIR3179-1
3   chr16   16375501       16690355     NR_036141     MIR3180-1
4   chr16   16375501       16690355     NR_036142     MIR3180-2
5   chr16   16375501       16690355     NR_036447        PKD1P1
6   chr16   16375501       16690355     NR_103772  LOC100288162
7   chr16   16375501       16690355     NR_106766     MIR6511A1
8   chr16   16375501       16690355     NR_106971     MIR6511A4
9   chr16   16375501       16690355     NR_107060     MIR6770-2
10  chr16   16375501       16690355     NR_128713     MIR3670-4
11  chr17     181187         580763  NM_001013672      C17orf97
12  chr17     181187         580763  NM_001128159         VPS53
13  chr17     181187         580763  NM_001190411        RPH3AL
15  chr17     181187         580763     NM_182705         RFLNB
16  chr17     181187         580763     NR_040011  LOC100506388
17  chr17     181187         580763     NR_136407  LOC105371430
18  chr18   67769262       67892384  NM_001318520          RTTN
19   chr2   51101233       51212683  NM_001330079         NRXN1,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr14   21625487       21837324  NM_007192    SUPT16H
1  chr14   21625487       21837324  NM_020366    RPGRIP1
2  chr14   21625487       21837324  NM_031314     HNRNPC
3  chr14   21625487       21837324  NR_038970  LINC00641,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143063128      143357204     NR_110761  LOC102723769
1    chr1  145324853      145471771  NM_001039888      ANKRD34A
2    chr1  145324853      145471771  NM_001277444         NBPF9
3    chr1  145324853      145471771  NM_001278267        NBPF20
4    chr1  145324853      145471771  NM_001302371        NBPF10
5    chr1  145324853      145471771  NM_001313972         TXNIP
7    chr1  145324853      145471771     NM_032305       POLR3GL
8    chr1  145324853      145471771     NM_145277          HFE2
9    chr1  145324853      145471771     NR_104217       NBPF25P
10   chr1  145324853      145471771     NR_125967  LOC101928979
11  chr14   21862137       22024126  NM_001163380         RAB2B
12  chr14   21862137       22024126  NM_001170629          CHD8
13  chr14   21862137       22024126  NM_001303523          TOX4
14  chr14   21862137       22024126     NM_019852        METTL3
17  chr14   21862137       22024126     NR_002916        SNORD8
18  chr14   21862137       22024126     NR_111966         SALL2
20   chr2   39670256       39820599     NR_037875     LOC728730
21   chr2  185128629      185337533     NR_039638     MIR548AE1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72683915       73470183     NM_013381         TRHDE
1   chr15   28615772       29203610  NM_001282468       GOLGA8M
2   chr15   28615772       29203610     NR_026589       WHAMMP2
3   chr15   28615772       29203610     NR_033351       GOLGA8F
5   chr15   28615772       29203610     NR_033353       GOLGA8G
7   chr15   28615772       29203610     NR_036443       HERC2P9
8   chr15   28615772       29203610     NR_036475  LOC100289656
9   chr15   28615772       29203610     NR_037599     PDCD6IPP2
10  chr15   28615772       29203610     NR_039734     MIR4509-3
12  chr15   28615772       29203610     NR_047567     GOLGA6L7P
13   chr3    2381711        2542022  NM_001206955         CNTN4,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr12   72587929       72717954     NM_013381      TRHDE
1  chr12   72587929       72717954     NR_026836  TRHDE-AS1
3  chr16    8644782        8804140     NM_020686       ABAT
4  chr16    8644782        8804140     NM_024109    METTL22
5   chr4  169226258      169342965  NM_001012967     DDX60L
7   chr4  169226258      169342965     NM_017631      DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16    8643473        8812571     NM_000663          ABAT
2   chr16    8643473        8812571     NM_024109       METTL22
3   chr16   18413092       18529092  NM_001004060         NOMO2
4   chr16   18413092       18529092  NM_001282511        NPIPA8
5   chr16   18413092       18529092     NR_036140     MIR3179-1
6   chr16   18413092       18529092     NR_036142     MIR3180-2
7   chr16   18413092       18529092     NR_036144     MIR3180-3
8   chr16   18413092       18529092     NR_037442     MIR3670-1
9   chr16   18413092       18529092     NR_103772  LOC100288162
10  chr16   18413092       18529092     NR_106971     MIR6511A4
11  chr16   18413092       18529092     NR_107060     MIR6770-2
12   chr6   12823020       12930869  NM_001322308       PHACTR1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   21867317       22313004  NM_001001912          OR4E2
1   chr14   21867317       22313004  NM_001005465         OR10G3
2   chr14   21867317       22313004  NM_001005466         OR10G2
3   chr14   21867317       22313004  NM_001163380          RAB2B
4   chr14   21867317       22313004  NM_001170629           CHD8
5   chr14   21867317       22313004  NM_001303523           TOX4
6   chr14   21867317       22313004  NM_001317107          OR4E1
7   chr14   21867317       22313004     NM_019852         METTL3
10  chr14   21867317       22313004     NR_111966          SALL2
12  chr14   47920854       48060355  NM_001113498          MDGA2
13  chr16   28442337       29817644     NM_000086           CLN3
14  chr16   28442337       29817644  NM_001014989            LAT
15  chr16   28442337       29817644  NM_001014999          SLX1A
16  chr16   28442337       29817644  NM_001017390        SULT1A4
17  chr16   28442337       29817644  NM_001030288            SPN
18  chr16   28442337       29817644  NM_001031827          BOLA2
20  chr16   28442337       29817644  NM_001042483          NUPR1
21  chr16   28442337       29817644     NM_001054        SULT1A2
22  chr16   28442337       29817644  NM_001142448          SPNS1
23  chr16   28442337       29817644  NM_001145795          SH2B1
25  chr16   28442337       29817644  NM_001199142          EIF3C
26  chr16   28442337       29817644  NM_001256269          KIF22
28  chr16   28442337       29817644  NM_001276275            MAZ
29  chr16   28442337       29817644  NM_001286075         ATP2A1
34  chr16   28442337       29817644  NM_001287251         NPIPB9
36  chr16   28442337       29817644  NM_001310136         NPIPB8
37  chr16   28442337       29817644  NM_001310137        NPIPB11
38  chr16   28442337       29817644  NM_001317856         EIF3CL
39  chr16   28442337       29817644  NM_001318249           QPRT
40  chr16   28442337       29817644  NM_001320622   BOLA2-SMG1P6
42  chr16   28442337       29817644     NM_001770           CD19
44  chr16   28442337       29817644     NM_003321           TUFM
48  chr16   28442337       29817644     NM_018690          APOBR
49  chr16   28442337       29817644     NM_024816         RABEP2
50  chr16   28442337       29817644     NM_032815       NFATC2IP
51  chr16   28442337       29817644     NM_138414          SGF29
52  chr16   28442337       29817644     NM_145659           IL27
53  chr16   28442337       29817644     NM_148416         ATXN2L
54  chr16   28442337       29817644     NM_152338           ZG16
55  chr16   28442337       29817644     NM_175900       C16orf54
57  chr16   28442337       29817644     NM_177529        SULT1A1
60  chr16   28442337       29817644     NR_002454      LOC606724
61  chr16   28442337       29817644     NR_002556      LOC388242
62  chr16   28442337       29817644     NR_002939        SNX29P2
63  chr16   28442337       29817644     NR_003369         RRN3P2
64  chr16   28442337       29817644     NR_037608  SLX1A-SULT1A3
65  chr16   28442337       29817644     NR_039742        MIR4517
66  chr16   28442337       29817644     NR_039872        MIR4721
67  chr16   28442337       29817644     NR_046287     ATP2A1-AS1
68  chr16   28442337       29817644     NR_049833      MIR3680-2
69  chr16   28442337       29817644     NR_107058      MIR6862-2
71  chr16   28442337       29817644     NR_135305         SMG1P2
72  chr16   28442337       29817644     NR_135312         SMG1P6
74   chr2  117968540      118603969     NM_006773          DDX18
75   chr7   64098980       64255574  NM_001160183         ZNF138
76   chr7   64098980       64255574  NM_001282360         ZNF107
79   chr7   64098980       64255574     NR_106898        MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143528348      143986655  NM_001123068       PPIAL4G
1    chr1  143528348      143986655  NM_001287385        FAM72C
2    chr1  143528348      143986655  NM_001345942        FAM72D
6    chr1  143528348      143986655     NR_104014     LINC01138
7    chr1  143528348      143986655     NR_106967       MIR6077
8    chr1  143528348      143986655     NR_111930  LOC100132057
10  chr11   48330576       48536896  NM_001004702         OR4C3
11  chr11   48330576       48536896  NM_001005512        OR4A47
12  chr11   48330576       48536896  NM_001005513        OR4C45
13  chr13   63177303       63471379     NR_047029     LINC00448
16   chr5  120993171      121232391     NM_177478          FTMT
17   chr7   14869970       14993196     NM_004080          DGKB,      chrom  cnv_start  cnv_terminate       tx_name      gene_name
0     chr1  145343705      145747369  NM_001012758         NUDT17
1     chr1  145343705      145747369  NM_001039888       ANKRD34A
2     chr1  145343705      145747369  NM_001184795         PEX11B
3     chr1  145343705      145747369  NM_001201325          PDZK1
4     chr1  145343705      145747369  NM_001277444          NBPF9
5     chr1  145343705      145747369  NM_001278267         NBPF20
6     chr1  145343705      145747369  NM_001280799        ANKRD35
7     chr1  145343705      145747369  NM_001302371         NBPF10
8     chr1  145343705      145747369  NM_001303040         ITGA10
9     chr1  145343705      145747369  NM_001303456         POLR3C
10    chr1  145343705      145747369  NM_001313972          TXNIP
12    chr1  145343705      145747369     NM_005105          RBM8A
13    chr1  145343705      145747369     NM_006099          PIAS3
16    chr1  145343705      145747369     NM_007053          CD160
17    chr1  145343705      145747369     NM_014455         RNF115
18    chr1  145343705      145747369     NM_032305        POLR3GL
19    chr1  145343705      145747369     NM_145277           HFE2
20    chr1  145343705      145747369     NM_153713          LIX1L
21    chr1  145343705      145747369     NR_002328         GNRHR2
25    chr1  145343705      145747369     NR_104217        NBPF25P
26    chr1  145343705      145747369     NR_106794        MIR6736
27    chr1  145343705      145747369     NR_125967   LOC101928979
28   chr11   48262434       48666652  NM_001004702          OR4C3
29   chr11   48262434       48666652  NM_001004725          OR4S1
30   chr11   48262434       48666652  NM_001004726          OR4X1
31   chr11   48262434       48666652  NM_001004727          OR4X2
32   chr11   48262434       48666652  NM_001005512         OR4A47
33   chr11   48262434       48666652  NM_001005513         OR4C45
34   chr14   21775738       22164493  NM_001001912          OR4E2
35   chr14   21775738       22164493  NM_001005465         OR10G3
..     ...        ...            ...           ...            ...
154  chr16   29743389       32221525     NM_032188           KAT8
155  chr16   29743389       32221525     NM_052838          SEPT1
156  chr16   29743389       32221525     NM_052874          STX1B
157  chr16   29743389       32221525     NM_138447         ZNF689
158  chr16   29743389       32221525     NM_152288          ORAI3
159  chr16   29743389       32221525     NM_152338           ZG16
160  chr16   29743389       32221525     NM_152458         ZNF785
162  chr16   29743389       32221525     NM_152901          PYDC1
163  chr16   29743389       32221525     NM_175900       C16orf54
164  chr16   29743389       32221525     NM_178863         KCTD13
165  chr16   29743389       32221525     NM_181718         ASPHD1
167  chr16   29743389       32221525     NR_002453         SMG1P5
168  chr16   29743389       32221525     NR_002454      LOC606724
169  chr16   29743389       32221525     NR_002556      LOC388242
170  chr16   29743389       32221525     NR_002966        SNORA30
171  chr16   29743389       32221525     NR_015396      CDIPT-AS1
172  chr16   29743389       32221525     NR_024034         CLUHP3
173  chr16   29743389       32221525     NR_024348     FBXL19-AS1
175  chr16   29743389       32221525     NR_027011         YBX3P1
176  chr16   29743389       32221525     NR_031576         MIR762
177  chr16   29743389       32221525     NR_037608  SLX1A-SULT1A3
178  chr16   29743389       32221525     NR_039743        MIR4518
179  chr16   29743389       32221525     NR_039744        MIR4519
182  chr16   29743389       32221525     NR_102400     PYCARD-AS1
184  chr16   29743389       32221525     NR_109773        HERC2P4
185  chr16   29743389       32221525     NR_110940       MIR762HG
188  chr16   29743389       32221525     NR_135055         FRG2KP
189  chr16   29743389       32221525     NR_135178   LOC102723753
190  chr16   29743389       32221525     NR_135192   LOC101928595
192   chr9   17228355       17355970  NM_001114395          CNTLN

[145 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48286762       48479294  NM_001004702         OR4C3
1   chr11   48286762       48479294  NM_001004725         OR4S1
2   chr11   48286762       48479294  NM_001005513        OR4C45
3   chr14   21837457       22019541  NM_001163380         RAB2B
4   chr14   21837457       22019541  NM_001170629          CHD8
5   chr14   21837457       22019541  NM_001303523          TOX4
6   chr14   21837457       22019541     NM_007192       SUPT16H
7   chr14   21837457       22019541     NM_019852        METTL3
10  chr14   21837457       22019541     NR_002916        SNORD8
11  chr14   21837457       22019541     NR_003029        SNORD9
12  chr14   21837457       22019541     NR_111966         SALL2
14  chr15   21152946       21266470     NR_040094     LINC01193
15  chr15   28577233       28768631     NR_033351       GOLGA8F
17  chr15   28577233       28768631     NR_033353       GOLGA8G
19  chr15   28577233       28768631     NR_039734     MIR4509-3
21  chr16   68604081       68715531  NM_001305204         ZFP90
22  chr16   68604081       68715531  NM_001317195          CDH3
23  chr16   68551997       68703929  NM_001305204         ZFP90
25  chr16   68551997       68703929  NM_001317195          CDH3
26  chr22   17245908       17784802  NM_001037814          GAB4
27  chr22   17245908       17784802  NM_001163079         CECR6
28  chr22   17245908       17784802  NM_001282227         CECR1
30  chr22   17245908       17784802  NM_001289905        IL17RA
31  chr22   17245908       17784802     NM_017829         CECR5
34  chr22   17245908       17784802     NM_175878          XKR3
36  chr22   17245908       17784802     NR_003607       HSFY1P1
37  chr22   17245908       17784802     NR_015352         CECR7
38  chr22   17245908       17784802     NR_024482     CECR5-AS1
39  chr22   17245908       17784802     NR_038398         CECR3
40  chr22   17245908       17784802     NR_103793  LOC100996342,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   67596445       67796967  NM_001127384      CTNNA3
2   chr12   72707088       73028944     NM_013381       TRHDE
3   chr14   21658777       22284904  NM_001001912       OR4E2
4   chr14   21658777       22284904  NM_001005465      OR10G3
5   chr14   21658777       22284904  NM_001005466      OR10G2
6   chr14   21658777       22284904  NM_001163380       RAB2B
7   chr14   21658777       22284904  NM_001170629        CHD8
8   chr14   21658777       22284904  NM_001303523        TOX4
9   chr14   21658777       22284904  NM_001317107       OR4E1
10  chr14   21658777       22284904     NM_007192     SUPT16H
11  chr14   21658777       22284904     NM_019852      METTL3
12  chr14   21658777       22284904     NM_020366     RPGRIP1
14  chr14   21658777       22284904     NM_031314      HNRNPC
16  chr14   21658777       22284904     NR_002916      SNORD8
17  chr14   21658777       22284904     NR_003029      SNORD9
18  chr14   21658777       22284904     NR_038970   LINC00641
20  chr14   21658777       22284904     NR_111966       SALL2
22   chr5  151344921      151595841     NR_109876  CTB-12O2.1
23   chr6  162388106      162582345     NM_013988       PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28560865       29036280  NM_001282468       GOLGA8M
1   chr15   28560865       29036280     NM_004667         HERC2
2   chr15   28560865       29036280     NR_026589       WHAMMP2
3   chr15   28560865       29036280     NR_033351       GOLGA8F
5   chr15   28560865       29036280     NR_033353       GOLGA8G
7   chr15   28560865       29036280     NR_036443       HERC2P9
8   chr15   28560865       29036280     NR_036475  LOC100289656
9   chr15   28560865       29036280     NR_037599     PDCD6IPP2
10  chr15   28560865       29036280     NR_039734     MIR4509-3
12   chr7   75766154       76317276  NM_001102594          DTX2
14   chr7   75766154       76317276  NM_001110199         SRRM3
15   chr7   75766154       76317276  NM_001110354           ZP3
16   chr7   75766154       76317276     NM_001540         HSPB1
18   chr7   75766154       76317276     NM_012479         YWHAG
19   chr7   75766154       76317276     NM_030570         UPK3B
20   chr7   75766154       76317276     NM_080744         SSC4D
21   chr7   75766154       76317276     NM_152992        POMZP3
22   chr7   75766154       76317276     NR_003262        FDPSP2
23   chr7   75766154       76317276     NR_029411  LOC100133091,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145298208      145521777  NM_001039888      ANKRD34A
1    chr1  145298208      145521777  NM_001184795        PEX11B
2    chr1  145298208      145521777  NM_001277444         NBPF9
3    chr1  145298208      145521777  NM_001278267        NBPF20
4    chr1  145298208      145521777  NM_001302371        NBPF10
5    chr1  145298208      145521777  NM_001313972         TXNIP
7    chr1  145298208      145521777     NM_005105         RBM8A
9    chr1  145298208      145521777     NM_032305       POLR3GL
10   chr1  145298208      145521777     NM_145277          HFE2
11   chr1  145298208      145521777     NM_153713         LIX1L
12   chr1  145298208      145521777     NR_002328        GNRHR2
16   chr1  145298208      145521777     NR_104217       NBPF25P
17   chr1  145298208      145521777     NR_125967  LOC101928979
18  chr14   21662330       21933461  NM_001163380         RAB2B
19  chr14   21662330       21933461  NM_001170629          CHD8
20  chr14   21662330       21933461     NM_007192       SUPT16H
21  chr14   21662330       21933461     NM_020366       RPGRIP1
23  chr14   21662330       21933461     NM_031314        HNRNPC
25  chr14   21662330       21933461     NR_002916        SNORD8
26  chr14   21662330       21933461     NR_003029        SNORD9
27  chr14   21662330       21933461     NR_038970     LINC00641
29  chr16   68631120       68933861  NM_001317184          CDH1
30  chr16   68631120       68933861  NM_001317195          CDH3
31  chr16   68631120       68933861     NM_024562        TANGO6
32  chr16   68631120       68933861     NR_106988     MIR7641-2
33  chr17    1183867        1329736     NM_005206           CRK
34  chr17    1183867        1329736     NM_006761         YWHAE
35  chr17    1183867        1329736     NM_172367         TUSC5
36   chr5  150114448      150266227  NM_001135643         DCTN4
38   chr5  150114448      150266227  NM_001145805          IRGM
40   chr5  150114448      150266227     NM_032947         SMIM3
41   chr9   41699774       42294178     NR_003670        FGF7P3
42   chr9   41699774       42294178     NR_015363         GLIDR
45   chr9   41699774       42294178     NR_126048  LOC102724238
46   chr9   41699774       42294178     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  102423614      103815962     NM_001854       COL11A1
1   chr1  102423614      103815962     NR_110211         OLFM3
2   chr1  143712703      144300541  NM_001123068       PPIAL4G
3   chr1  143712703      144300541  NM_001278267        NBPF20
4   chr1  143712703      144300541  NM_001287385        FAM72C
5   chr1  143712703      144300541  NM_001345942        FAM72D
9   chr1  143712703      144300541     NR_024511     LINC00623
11  chr1  143712703      144300541     NR_104014     LINC01138
12  chr1  143712703      144300541     NR_111930  LOC100132057
13  chr1  143712703      144300541     NR_111953     LINC00869
15  chr2   96015233       96300806  NM_001034914        KCNIP3
16  chr2   96015233       96300806  NM_001164464       TRIM43B
18  chr2   96015233       96300806     NM_016044        FAHD2A
19  chr2   96015233       96300806     NM_138800        TRIM43
20  chr3   37857221       38004222     NM_002207         ITGA9
21  chr3   37857221       38004222     NM_005808        CTDSPL
22  chr3   37857221       38004222     NR_110531     ITGA9-AS1
24  chr6    4269753        4603741     NR_106988     MIR7641-2
25  chr7   16726174       17246735  NM_001159767          BZW2
26  chr7   16726174       17246735     NM_006408          AGR2
27  chr7   16726174       17246735     NM_014399       TSPAN13
28  chr7   16726174       17246735     NM_176813          AGR3
29  chr7   71447871       71582964  NM_001017440         CALN1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21934667       22093169  NM_001005465    OR10G3
1  chr14   21934667       22093169  NM_001163380     RAB2B
2  chr14   21934667       22093169  NM_001303523      TOX4
3  chr14   21934667       22093169     NM_019852    METTL3
5  chr14   21934667       22093169     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   68044102       68172777  NM_001127384       CTNNA3
2   chr14   21738739       23296425  NM_001001912        OR4E2
3   chr14   21738739       23296425  NM_001005465       OR10G3
4   chr14   21738739       23296425  NM_001005466       OR10G2
5   chr14   21738739       23296425  NM_001126105       SLC7A7
7   chr14   21738739       23296425  NM_001163380        RAB2B
8   chr14   21738739       23296425  NM_001170629         CHD8
9   chr14   21738739       23296425  NM_001303523         TOX4
10  chr14   21738739       23296425  NM_001317107        OR4E1
11  chr14   21738739       23296425     NM_001344         DAD1
12  chr14   21738739       23296425     NM_005015        OXA1L
13  chr14   21738739       23296425     NM_007192      SUPT16H
14  chr14   21738739       23296425     NM_019852       METTL3
15  chr14   21738739       23296425     NM_020366      RPGRIP1
17  chr14   21738739       23296425     NM_022060        ABHD4
19  chr14   21738739       23296425     NR_002916       SNORD8
20  chr14   21738739       23296425     NR_003029       SNORD9
22  chr14   21738739       23296425     NR_111966        SALL2
24   chr4   69293066       69425432     NM_001077      UGT2B17
25   chr4   69293066       69425432     NM_014058    TMPRSS11E
26   chr8    4157424        4267398     NM_033225        CSMD1
27   chr9   12078399       13159558     NM_000550        TYRP1
28   chr9   12078399       13159558  NM_001261407         MPDZ
30   chr9   12078399       13159558     NM_203403      LURAP1L
31   chr9   12078399       13159558     NR_125775  LURAP1L-AS1
32   chr9   12078399       13159558     NR_132976     SNORD137,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21807957       22397362  NM_001001912     OR4E2
1   chr14   21807957       22397362  NM_001005465    OR10G3
2   chr14   21807957       22397362  NM_001005466    OR10G2
3   chr14   21807957       22397362  NM_001163380     RAB2B
4   chr14   21807957       22397362  NM_001170629      CHD8
5   chr14   21807957       22397362  NM_001303523      TOX4
6   chr14   21807957       22397362  NM_001317107     OR4E1
7   chr14   21807957       22397362     NM_007192   SUPT16H
8   chr14   21807957       22397362     NM_019852    METTL3
9   chr14   21807957       22397362     NM_020366   RPGRIP1
12  chr14   21807957       22397362     NR_002916    SNORD8
13  chr14   21807957       22397362     NR_003029    SNORD9
14  chr14   21807957       22397362     NR_111966     SALL2
16  chr19   47856068       47982986  NM_001009813     MEIS3
17  chr19   47856068       47982986  NM_001291296      KPTN
20  chr19   47856068       47982986     NM_014681     DHX34
21  chr19   47856068       47982986     NM_015063    SLC8A2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28186169       29632953     NM_000275          OCA2
1   chr15   28186169       29632953  NM_001130414         APBA2
2   chr15   28186169       29632953  NM_001282468       GOLGA8M
4   chr15   28186169       29632953     NM_004667         HERC2
5   chr15   28186169       29632953     NM_015307      FAM189A1
6   chr15   28186169       29632953     NM_138704        NSMCE3
7   chr15   28186169       29632953     NR_026589       WHAMMP2
8   chr15   28186169       29632953     NR_033351       GOLGA8F
10  chr15   28186169       29632953     NR_033353       GOLGA8G
12  chr15   28186169       29632953     NR_036443       HERC2P9
13  chr15   28186169       29632953     NR_036475  LOC100289656
14  chr15   28186169       29632953     NR_037599     PDCD6IPP2
15  chr15   28186169       29632953     NR_039734     MIR4509-3
17  chr15   28186169       29632953     NR_047567     GOLGA6L7P,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  242728704      243339815     NM_014812       CEP170
1    chr1  242728704      243339815     NR_029401    LINC01347
2   chr10   68005707       68210925  NM_001127384       CTNNA3
4    chr2   75931176       76033279  NM_001201334        GCFC2
7   chr20   14737816       14915526     NM_080676      MACROD2
8   chr20   14737816       14915526     NR_037841  MACROD2-AS1
10  chr20   40561312       41029450     NM_133170        PTPRT
11   chr3    4103678        4346078  NM_001243723       SETMAR
13   chr4   69308849       69416711     NM_001077      UGT2B17
14   chr4   69308849       69416711     NM_014058    TMPRSS11E
15   chr8    7153036        7392567  NM_001040705     DEFB107B
16   chr8    7153036        7392567  NM_001081551     DEFB103A
17   chr8    7153036        7392567  NM_001164457      ZNF705G
18   chr8    7153036        7392567  NM_001205266       DEFB4B
19   chr8    7153036        7392567  NM_001256873      USP17L1
20   chr8    7153036        7392567  NM_001256874      USP17L4
21   chr8    7153036        7392567     NM_058200      SPAG11B
25   chr8    7153036        7392567     NM_080389     DEFB104A
26   chr8    7153036        7392567     NM_152250     DEFB105A
27   chr8    7153036        7392567     NM_152251     DEFB106A
28   chr8    7153036        7392567     NR_003668   DEFB109P1B
29   chr8    7153036        7392567     NR_027423       FAM66B
30   chr9   28600283       28775308  NM_001258282       LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144716020      144890708  NM_001002811       PDE4DIP
4    chr1  144716020      144890708  NM_001277444         NBPF9
5    chr1  144716020      144890708  NM_001278267        NBPF20
6    chr1  144716020      144890708     NR_102405         NBPF8
7   chr22   17252080       17352745     NM_175878          XKR3
8   chr22   17252080       17352745     NR_003607       HSFY1P1
9    chr6  162680072      162960941     NM_013988         PARK2
10   chr7   63832951       63945741     NR_029404       YWHAEP1
11   chr9  102228142      102365529     NR_109802  LOC101928438,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   57696372       57958125  NM_001080156   ARHGAP9
2   chr12   57696372       57958125  NM_001160045      GLI1
4   chr12   57696372       57958125  NM_001261412     DCTN2
6   chr12   57696372       57958125  NM_001330122    R3HDM2
7   chr12   57696372       57958125     NM_004083     DDIT3
8   chr12   57696372       57958125     NM_004984     KIF5A
9   chr12   57696372       57958125     NM_004990      MARS
10  chr12   57696372       57958125     NM_005538     INHBC
12  chr12   57696372       57958125     NM_031479     INHBE
14  chr12   57696372       57958125     NM_052897      MBD6
15  chr12   57696372       57958125     NR_030346    MIR616
16  chr12   57696372       57958125     NR_106816   MIR6758
17  chr14   21739059       21986547  NM_001163380     RAB2B
18  chr14   21739059       21986547  NM_001170629      CHD8
19  chr14   21739059       21986547  NM_001303523      TOX4
20  chr14   21739059       21986547     NM_007192   SUPT16H
21  chr14   21739059       21986547     NM_019852    METTL3
22  chr14   21739059       21986547     NM_020366   RPGRIP1
25  chr14   21739059       21986547     NR_002916    SNORD8
26  chr14   21739059       21986547     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16289409       16457746  NM_001004067         NOMO3
1   chr16   16289409       16457746  NM_001079528         ABCC6
3   chr16   16289409       16457746     NR_036140     MIR3179-1
4   chr16   16289409       16457746     NR_036141     MIR3180-1
5   chr16   16289409       16457746     NR_036142     MIR3180-2
6   chr16   16289409       16457746     NR_036447        PKD1P1
7   chr16   16289409       16457746     NR_103772  LOC100288162
8   chr16   16289409       16457746     NR_106766     MIR6511A1
9   chr16   16289409       16457746     NR_107060     MIR6770-2
10  chr16   16289409       16457746     NR_128713     MIR3670-4
11  chr20    8615444        8746635     NM_015192         PLCB1
12  chr20   14703172       14823739     NM_080676       MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   61815136       61967972     NM_006255         PRKCH
1   chr16   18077485       19372763  NM_001004060         NOMO2
2   chr16   18077485       19372763     NM_001019        RPS15A
3   chr16   18077485       19372763  NM_001160364          TMC7
4   chr16   18077485       19372763  NM_001190983          COQ7
5   chr16   18077485       19372763  NM_001256720       CLEC19A
6   chr16   18077485       19372763  NM_001282511        NPIPA8
8   chr16   18077485       19372763  NM_001308157         SYT17
9   chr16   18077485       19372763  NM_001313858       ARL6IP1
12  chr16   18077485       19372763     NM_015092          SMG1
16  chr16   18077485       19372763     NR_003569       ABCC6P1
17  chr16   18077485       19372763     NR_028028      ITPRIPL2
18  chr16   18077485       19372763     NR_036140     MIR3179-1
19  chr16   18077485       19372763     NR_036142     MIR3180-2
20  chr16   18077485       19372763     NR_036144     MIR3180-3
21  chr16   18077485       19372763     NR_037442     MIR3670-1
22  chr16   18077485       19372763     NR_103772  LOC100288162
23  chr16   18077485       19372763     NR_106971     MIR6511A4
24  chr16   18077485       19372763     NR_107060     MIR6770-2
25  chr16   18077485       19372763     NR_119379  LOC102723385
27   chr9    6587714        6696797     NM_000170          GLDC,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68071022       68195745  NM_001127384        CTNNA3
2   chr11  104609169      105209372  NM_001007232        CARD17
3   chr11  104609169      105209372     NM_001225         CASP4
4   chr11  104609169      105209372  NM_001257119         CASP1
5   chr11  104609169      105209372     NM_021571        CARD18
7   chr11  104609169      105209372     NM_052889        CARD16
8   chr11  104609169      105209372     NR_024239         CASP5
9   chr11  104609169      105209372     NR_034064        CASP12
10  chr11  104609169      105209372     NR_034078     LOC643733
11  chr11  104609169      105209372     NR_131905       CASP1P2
12  chr12   72717839       72874188     NM_013381         TRHDE
13  chr20   14849260       14953850     NM_080676       MACROD2
14  chr20   14849260       14953850     NR_037841   MACROD2-AS1
16  chr22   17263004       17772050  NM_001037814          GAB4
17  chr22   17263004       17772050  NM_001163079         CECR6
18  chr22   17263004       17772050  NM_001282227         CECR1
20  chr22   17263004       17772050  NM_001289905        IL17RA
21  chr22   17263004       17772050     NM_017829         CECR5
24  chr22   17263004       17772050     NM_175878          XKR3
26  chr22   17263004       17772050     NR_003607       HSFY1P1
27  chr22   17263004       17772050     NR_015352         CECR7
28  chr22   17263004       17772050     NR_024482     CECR5-AS1
29  chr22   17263004       17772050     NR_038398         CECR3
30  chr22   17263004       17772050     NR_103793  LOC100996342
31   chr5   85194698       86355191     NM_001867         COX7C
32   chr5   85194698       86355191     NR_003719       NBPF22P
33   chr5   85194698       86355191     NR_037402       MIR3607
34   chr5   85194698       86355191     NR_105017  LOC100505878
35   chr7    3318824        3459873     NM_152744          SDK1
36   chr8   97804778       97906823     NM_016134           CPQ,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143413306      144298143  NM_001123068       PPIAL4G
1    chr1  143413306      144298143  NM_001278267        NBPF20
2    chr1  143413306      144298143  NM_001287385        FAM72C
3    chr1  143413306      144298143  NM_001345942        FAM72D
7    chr1  143413306      144298143     NR_104014     LINC01138
8    chr1  143413306      144298143     NR_106967       MIR6077
9    chr1  143413306      144298143     NR_111930  LOC100132057
11   chr1  143706915      143851285  NM_001123068       PPIAL4G
12   chr1  143706915      143851285     NR_104014     LINC01138
13   chr1  143706915      143851285     NR_111930  LOC100132057
14  chr11  104580418      104786655     NR_034064        CASP12
15  chr11  104580418      104786655     NR_034078     LOC643733
16  chr15   99928376      101599022  NM_001040616         LINS1
17  chr15   99928376      101599022  NM_001130928         MEF2A
18  chr15   99928376      101599022  NM_001284400        LRRC28
19  chr15   99928376      101599022  NM_001284417        LYSMD4
21  chr15   99928376      101599022  NM_001290341         CERS3
24  chr15   99928376      101599022  NM_001293815       ALDH1A3
27  chr15   99928376      101599022     NM_024652         LRRK1
28  chr15   99928376      101599022     NM_024708          ASB7
29  chr15   99928376      101599022     NM_139057      ADAMTS17
31  chr15   99928376      101599022     NR_003260       DNM1P46
32  chr15   99928376      101599022     NR_028139       SPATA41
34  chr15   99928376      101599022     NR_073405        PRKXP1
35  chr15   99928376      101599022     NR_120374     CERS3-AS1
36  chr15   99928376      101599022     NR_135693  LOC102723335
37  chr15   99928376      101599022     NR_135737     LOC400464
38  chr15   99928376      101599022     NR_135827  LOC101927751,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21914601       22122515  NM_001005465        OR10G3
1   chr14   21914601       22122515  NM_001005466        OR10G2
2   chr14   21914601       22122515  NM_001163380         RAB2B
3   chr14   21914601       22122515  NM_001303523          TOX4
4   chr14   21914601       22122515     NM_019852        METTL3
6   chr14   21914601       22122515     NR_111966         SALL2
8   chr18   24727928       25070873  NM_001256316         CHST9
9   chr18   24727928       25070873     NR_134589  LOC105372038
10   chr2  215413736      216324612     NM_000465         BARD1
11   chr2  215413736      216324612  NM_001080500         VWC2L
12   chr2  215413736      216324612  NM_001306129           FN1
14   chr2  215413736      216324612     NM_004044          ATIC
15   chr2  215413736      216324612     NM_015657        ABCA12
18   chr2  215413736      216324612     NR_110292  LOC101928103
19   chr2  215413736      216324612     NR_110607  LOC102724849
20   chr7   84719723       84841024     NM_152754        SEMA3D
21   chr7   88958452       89092285     NM_181646       ZNF804B
22   chr8    8192137        8387435  NM_001080826         PRAG1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244976295      245157704  NM_001143943        EFCAB2
2    chr1  244976295      245157704  NM_001312871         COX20
4    chr1  244976295      245157704     NM_004501        HNRNPU
7    chr1  244976295      245157704     NR_111907  LOC101928068
8    chr1  244976295      245157704     NR_132782      SNORA100
9   chr11   48338627       48444229  NM_001004702         OR4C3
10  chr11   48338627       48444229  NM_001005513        OR4C45
11  chr11   83451252       83644705  NM_001142699          DLG2
15  chr16   16346695       16614518  NM_001004067         NOMO3
16  chr16   16346695       16614518  NM_001282511        NPIPA8
17  chr16   16346695       16614518     NR_036140     MIR3179-1
18  chr16   16346695       16614518     NR_036141     MIR3180-1
19  chr16   16346695       16614518     NR_036142     MIR3180-2
20  chr16   16346695       16614518     NR_036447        PKD1P1
21  chr16   16346695       16614518     NR_103772  LOC100288162
22  chr16   16346695       16614518     NR_106766     MIR6511A1
23  chr16   16346695       16614518     NR_106971     MIR6511A4
24  chr16   16346695       16614518     NR_107060     MIR6770-2
25  chr16   16346695       16614518     NR_128713     MIR3670-4
26   chr4  169180785      170284276  NM_001012967        DDX60L
27   chr4  169180785      170284276  NM_001166108         PALLD
31   chr4  169180785      170284276     NM_017631         DDX60
32   chr4  169180785      170284276     NM_020870        SH3RF1
33   chr4  169180785      170284276     NM_032783          CBR4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  189982045      190220610  NM_001317188     BRINP3
2   chr14   21751078       22415609  NM_001001912      OR4E2
3   chr14   21751078       22415609  NM_001005465     OR10G3
4   chr14   21751078       22415609  NM_001005466     OR10G2
5   chr14   21751078       22415609  NM_001163380      RAB2B
6   chr14   21751078       22415609  NM_001170629       CHD8
7   chr14   21751078       22415609  NM_001303523       TOX4
8   chr14   21751078       22415609  NM_001317107      OR4E1
9   chr14   21751078       22415609     NM_007192    SUPT16H
10  chr14   21751078       22415609     NM_019852     METTL3
11  chr14   21751078       22415609     NM_020366    RPGRIP1
14  chr14   21751078       22415609     NR_002916     SNORD8
15  chr14   21751078       22415609     NR_003029     SNORD9
16  chr14   21751078       22415609     NR_111966      SALL2
18  chr16   21736219       21850424  NM_001161683       OTOA
19  chr16   21736219       21850424  NM_001310148     NPIPB4
22  chr16   21736219       21850424     NR_003370     RRN3P1
23   chr5   96640437       96916631     NR_105028  LINC01340
24   chr9   30268072       30418110     NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152997738      153115829  NM_001014450        SPRR2F
1    chr1  152997738      153115829  NM_001017418        SPRR2B
2    chr1  152997738      153115829  NM_001024209        SPRR2E
3    chr1  152997738      153115829     NM_003125        SPRR1B
4    chr1  152997738      153115829     NM_005988        SPRR2A
5    chr1  152997738      153115829     NM_006945        SPRR2D
6    chr1  152997738      153115829     NR_003062        SPRR2C
7    chr1  181380161      182036857     NM_000721       CACNA1E
8    chr1  181380161      182036857  NM_001009992        ZNF648
9   chr10   56462778       56719239  NM_001142770        PCDH15
12  chr14   21778573       21937202  NM_001163380         RAB2B
13  chr14   21778573       21937202  NM_001170629          CHD8
14  chr14   21778573       21937202     NM_007192       SUPT16H
15  chr14   21778573       21937202     NM_020366       RPGRIP1
18  chr14   21778573       21937202     NR_002916        SNORD8
19  chr14   21778573       21937202     NR_003029        SNORD9
20  chr20   14736577       14873086     NM_080676       MACROD2
21  chr20   14736577       14873086     NR_037841   MACROD2-AS1
22   chr4  130526870      130833018     NR_110753  LOC101927282
23   chr8    3996500        4152509     NM_033225         CSMD1
24   chr8    8178840        8671626  NM_001080826         PRAG1
25   chr8    8178840        8671626     NM_004225        MFHAS1
26   chr8    8178840        8671626     NM_194284        CLDN23
27   chr9   28510288       28689426  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21827221       21996319  NM_001163380      RAB2B
1   chr14   21827221       21996319  NM_001170629       CHD8
2   chr14   21827221       21996319  NM_001303523       TOX4
3   chr14   21827221       21996319     NM_007192    SUPT16H
4   chr14   21827221       21996319     NM_019852     METTL3
7   chr14   21827221       21996319     NR_002916     SNORD8
8   chr14   21827221       21996319     NR_003029     SNORD9
9   chr14   21827221       21996319     NR_111966      SALL2
11  chr16   68601434       68887227  NM_001305204      ZFP90
12  chr16   68601434       68887227  NM_001317184       CDH1
13  chr16   68601434       68887227  NM_001317195       CDH3
14  chr16   68601434       68887227     NM_024562     TANGO6
15  chr16   68601434       68887227     NR_106988  MIR7641-2
16   chr6   38051553       38181123  NM_001172418      BTBD9
17   chr6   38051553       38181123     NM_021943     ZFAND3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81456844       81671934  NM_001278495        NUTM2B
1   chr10   81456844       81671934     NR_029407     LOC642361
2   chr10   81456844       81671934     NR_033857       BMS1P21
3   chr10   81456844       81671934     NR_120611    NUTM2B-AS1
6   chr15   20974277       21155532  NM_001277303        POTEB2
7   chr15   20974277       21155532     NM_207355        POTEB3
8   chr15   20974277       21155532     NR_028506         NF1P2
9   chr15   20974277       21155532     NR_036062     MIR3118-2
10  chr15   20974277       21155532     NR_040094     LINC01193
11  chr15   20974277       21155532     NR_049895     MIR5701-2
13  chr15   28127100       28285135     NM_000275          OCA2
15  chr16   16388969       16532394  NM_001282511        NPIPA8
16  chr16   16388969       16532394     NR_036140     MIR3179-1
17  chr16   16388969       16532394     NR_036141     MIR3180-1
18  chr16   16388969       16532394     NR_036142     MIR3180-2
19  chr16   16388969       16532394     NR_036447        PKD1P1
20  chr16   16388969       16532394     NR_103772  LOC100288162
21  chr16   16388969       16532394     NR_106766     MIR6511A1
22  chr16   16388969       16532394     NR_106971     MIR6511A4
23  chr16   16388969       16532394     NR_107060     MIR6770-2
24  chr16   16388969       16532394     NR_128713     MIR3670-4
25   chr3  155638691      155752579     NM_003875          GMPS
26   chr9   39100638       40979554  NM_001083124     SPATA31A3
27   chr9   39100638       40979554  NM_001085452     SPATA31A1
29   chr9   39100638       40979554     NM_033160        ZNF658
30   chr9   39100638       40979554     NM_033655       CNTNAP3
31   chr9   39100638       40979554     NR_003528       ZNF658B
32   chr9   39100638       40979554     NR_026801       FAM74A3
33   chr9   39100638       40979554     NR_026803       FAM74A1
36   chr9   39100638       40979554     NR_135122  LOC105379450,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  102736808      102928711  NM_001318739       DCUN1D5
1   chr11  102736808      102928711     NM_002426         MMP12
2   chr11  102736808      102928711     NM_002427         MMP13
3   chr12   72677241       72880633     NM_013381         TRHDE
4   chr12   72681781       72956689     NM_013381         TRHDE
5   chr16   16386293       16531814  NM_001004067         NOMO3
6   chr16   16386293       16531814  NM_001282511        NPIPA8
7   chr16   16386293       16531814     NR_036140     MIR3179-1
8   chr16   16386293       16531814     NR_036141     MIR3180-1
9   chr16   16386293       16531814     NR_036142     MIR3180-2
10  chr16   16386293       16531814     NR_036447        PKD1P1
11  chr16   16386293       16531814     NR_103772  LOC100288162
12  chr16   16386293       16531814     NR_106766     MIR6511A1
13  chr16   16386293       16531814     NR_106971     MIR6511A4
14  chr16   16386293       16531814     NR_107060     MIR6770-2
15  chr16   16386293       16531814     NR_128713     MIR3670-4
16  chr16   68557330       68685647  NM_001305204         ZFP90
18  chr16   68557330       68685647  NM_001317195          CDH3
19   chr3  197139011      197249880     NM_203314          BDH1
21   chr4   94184970       94301563     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63324656       63523441     NR_047029     LINC00448
3   chr16   18280511       18596451  NM_001004060         NOMO2
4   chr16   18280511       18596451  NM_001282511        NPIPA8
5   chr16   18280511       18596451     NR_003569       ABCC6P1
6   chr16   18280511       18596451     NR_036140     MIR3179-1
7   chr16   18280511       18596451     NR_036142     MIR3180-2
8   chr16   18280511       18596451     NR_036144     MIR3180-3
9   chr16   18280511       18596451     NR_037442     MIR3670-1
10  chr16   18280511       18596451     NR_103772  LOC100288162
11  chr16   18280511       18596451     NR_106971     MIR6511A4
12  chr16   18280511       18596451     NR_107060     MIR6770-2
13  chr22   17231680       17341412     NM_175878          XKR3
14  chr22   17231680       17341412     NR_003607       HSFY1P1
15   chr7   88926704       89105842     NM_181646       ZNF804B
16   chr8    7014743        7244692  NM_001164457       ZNF705G
17   chr8    7014743        7244692  NM_001256873       USP17L1
18   chr8    7014743        7244692  NM_001256874       USP17L4
19   chr8    7014743        7244692     NR_003668    DEFB109P1B
20   chr8    7014743        7244692     NR_027000     LINC00965
23   chr8    7014743        7244692     NR_027423        FAM66B
24   chr9   16767552       17186671  NM_001114395         CNTLN
26   chr9   16767552       17186671     NM_017637          BNC2
28   chr9   24406810       26253204  NM_001004125         TUSC1
29   chr9   24406810       26253204  NM_001004352  LOC100506422
30   chr9   24406810       26253204  NM_001271706        IZUMO3
31   chr9   24406810       26253204     NR_121604     LINC01241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21765912       22435442  NM_001001912         OR4E2
1   chr14   21765912       22435442  NM_001005465        OR10G3
2   chr14   21765912       22435442  NM_001005466        OR10G2
3   chr14   21765912       22435442  NM_001163380         RAB2B
4   chr14   21765912       22435442  NM_001170629          CHD8
5   chr14   21765912       22435442  NM_001303523          TOX4
6   chr14   21765912       22435442  NM_001317107         OR4E1
7   chr14   21765912       22435442     NM_007192       SUPT16H
8   chr14   21765912       22435442     NM_019852        METTL3
9   chr14   21765912       22435442     NM_020366       RPGRIP1
12  chr14   21765912       22435442     NR_002916        SNORD8
13  chr14   21765912       22435442     NR_003029        SNORD9
14  chr14   21765912       22435442     NR_111966         SALL2
16  chr15   28318233       28921137     NM_000275          OCA2
18  chr15   28318233       28921137     NM_004667         HERC2
19  chr15   28318233       28921137     NR_033351       GOLGA8F
21  chr15   28318233       28921137     NR_033353       GOLGA8G
23  chr15   28318233       28921137     NR_036443       HERC2P9
24  chr15   28318233       28921137     NR_039734     MIR4509-3
26   chr9   41899989       42747933  NM_001012419     ANKRD20A3
27   chr9   41899989       42747933  NM_001012421     ANKRD20A2
28   chr9   41899989       42747933     NM_199244       FOXD4L4
29   chr9   41899989       42747933     NR_003670        FGF7P3
30   chr9   41899989       42747933     NR_015363         GLIDR
31   chr9   41899989       42747933     NR_121572      GXYLT1P3
34   chr9   41899989       42747933     NR_126048  LOC102724238
35   chr9   41899989       42747933     NR_126049     LOC554249
36   chr9   41899989       42747933     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    5089512        5230465  NM_001253908        AKR1C3
3   chr10    5089512        5230465     NR_027916       AKR1C8P
4   chr10   27659109       27781895  NM_001034842        PTCHD3
5   chr16   16343758       16746104  NM_001004067         NOMO3
6   chr16   16343758       16746104  NM_001282511        NPIPA8
7   chr16   16343758       16746104     NR_036140     MIR3179-1
8   chr16   16343758       16746104     NR_036141     MIR3180-1
9   chr16   16343758       16746104     NR_036142     MIR3180-2
10  chr16   16343758       16746104     NR_036447        PKD1P1
11  chr16   16343758       16746104     NR_103772  LOC100288162
12  chr16   16343758       16746104     NR_106766     MIR6511A1
13  chr16   16343758       16746104     NR_106971     MIR6511A4
14  chr16   16343758       16746104     NR_107060     MIR6770-2
15  chr16   16343758       16746104     NR_128713     MIR3670-4
16  chr17    1111188        1530307  NM_001080779         MYO1C
18  chr17    1111188        1530307  NM_001164405        BHLHA9
19  chr17    1111188        1530307  NM_001284498       SLC43A2
21  chr17    1111188        1530307  NM_001322841           ABR
23  chr17    1111188        1530307     NM_005206           CRK
24  chr17    1111188        1530307     NM_006224        PITPNA
25  chr17    1111188        1530307     NM_006761         YWHAE
26  chr17    1111188        1530307     NM_016532        INPP5K
29  chr17    1111188        1530307     NM_172367         TUSC5
30  chr17    1111188        1530307     NR_028514    PITPNA-AS1
31  chr20   14585112       14726414     NM_080676       MACROD2
32  chr20   14585112       14726414     NR_104193   MACROD2-IT1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68619888       70467778  NM_001033083          PBLD
1   chr10   68619888       70467778  NM_001080449          DNA2
2   chr10   68619888       70467778  NM_001127384        CTNNA3
3   chr10   68619888       70467778  NM_001142498         SIRT1
4   chr10   68619888       70467778  NM_001256267          MYPN
6   chr10   68619888       70467778  NM_001278187         HERC4
7   chr10   68619888       70467778  NM_001278225         RUFY2
10  chr10   68619888       70467778  NM_001322445       HNRNPH3
13  chr10   68619888       70467778  NM_001324312      SLC25A16
20  chr10   68619888       70467778     NM_021800       DNAJC12
23  chr10   68619888       70467778     NM_030625          TET1
24  chr10   68619888       70467778     NM_145178         ATOH7
25  chr10   68619888       70467778     NM_178011        LRRTM3
30  chr10   68619888       70467778     NR_106973       MIR7151
32  chr10   68619888       70467778     NR_111911  LOC101928961
33  chr10   68619888       70467778     NR_131184      POU5F1P5
34  chr14   21880463       22012414  NM_001163380         RAB2B
35  chr14   21880463       22012414  NM_001170629          CHD8
36  chr14   21880463       22012414  NM_001303523          TOX4
37  chr14   21880463       22012414     NM_019852        METTL3
40  chr14   21880463       22012414     NR_111966         SALL2
42  chr16   16460218       16569301  NM_001282511        NPIPA8
43  chr16   16460218       16569301     NR_106971     MIR6511A4
44   chr2   78032191       78169874     NR_110286  LOC101927926
45   chr2   78032191       78169874     NR_110288  LOC101927967
46  chr20   14685213       14830734     NM_080676       MACROD2
47  chr20   14895054       15009259     NM_080676       MACROD2
48  chr20   14895054       15009259     NR_037841   MACROD2-AS1
50   chr7  110556238      110982811  NM_001099658         LRRN3
51   chr7  110556238      110982811  NM_001244606        IMMP2L
53   chr9   44307887       44421340     NR_121564  LOC101927827
54   chr9   44307887       44421340     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  237544076      237725485     NM_001035          RYR2
1    chr1  237544076      237725485     NR_039626       MIR4428
2   chr11   60295255       60747966  NM_001278320        MS4A13
3   chr11   60295255       60747966  NM_001310141        MS4A18
4   chr11   60295255       60747966     NM_004778        PTGDR2
5   chr11   60295255       60747966     NM_006725           CD6
6   chr11   60295255       60747966     NM_014502        PRPF19
7   chr11   60295255       60747966     NM_017870      TMEM132A
8   chr11   60295255       60747966     NM_024092       TMEM109
9   chr11   60295255       60747966     NM_024098        CCDC86
10  chr11   60295255       60747966     NM_031457         MS4A8
11  chr11   60295255       60747966     NM_152717        MS4A15
12  chr11   60295255       60747966     NM_206893        MS4A10
13  chr11   60295255       60747966     NM_207341           ZP1
14  chr11   60295255       60747966     NR_026946     LINC00301
15  chr11   60295255       60747966     NR_027391       SLC15A3
16  chr11   83950477       84253218  NM_001142699          DLG2
20  chr16   18344417       18939884  NM_001004060         NOMO2
21  chr16   18344417       18939884     NM_001019        RPS15A
22  chr16   18344417       18939884  NM_001282511        NPIPA8
23  chr16   18344417       18939884  NM_001313858       ARL6IP1
24  chr16   18344417       18939884     NM_015092          SMG1
26  chr16   18344417       18939884     NR_003569       ABCC6P1
27  chr16   18344417       18939884     NR_036140     MIR3179-1
28  chr16   18344417       18939884     NR_036142     MIR3180-2
29  chr16   18344417       18939884     NR_036144     MIR3180-3
30  chr16   18344417       18939884     NR_037442     MIR3670-1
31  chr16   18344417       18939884     NR_103772  LOC100288162
32  chr16   18344417       18939884     NR_106971     MIR6511A4
33  chr16   18344417       18939884     NR_107060     MIR6770-2
34   chr2  107647319      108311850     NR_049853      MIR548AU
35   chr5  104379750      105075205     NR_000039       RAB9BP1
36   chr5  142414065      142576671  NM_001135608      ARHGAP26
37   chr5  142414065      142576671     NR_046816  ARHGAP26-IT1
38   chr6  162633940      163205234  NM_001080378         PACRG
40   chr6  162633940      163205234     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10  135279684      135423151     NM_000773    CYP2E1
1   chr10  135279684      135423151  NM_001143763     SYCE1
4   chr10  135279684      135423151     NR_002934    SCART1
5   chr10  135279684      135423151     NR_033789    SPRNP1
6   chr14   21842778       22049933  NM_001005465    OR10G3
7   chr14   21842778       22049933  NM_001163380     RAB2B
8   chr14   21842778       22049933  NM_001170629      CHD8
9   chr14   21842778       22049933  NM_001303523      TOX4
10  chr14   21842778       22049933     NM_007192   SUPT16H
11  chr14   21842778       22049933     NM_019852    METTL3
14  chr14   21842778       22049933     NR_002916    SNORD8
15  chr14   21842778       22049933     NR_003029    SNORD9
16  chr14   21842778       22049933     NR_111966     SALL2
18  chr14   21938076       22171939  NM_001001912     OR4E2
19  chr14   21938076       22171939  NM_001005465    OR10G3
20  chr14   21938076       22171939  NM_001005466    OR10G2
21  chr14   21938076       22171939  NM_001163380     RAB2B
22  chr14   21938076       22171939  NM_001303523      TOX4
23  chr14   21938076       22171939  NM_001317107     OR4E1
24  chr14   21938076       22171939     NM_019852    METTL3
26  chr14   21938076       22171939     NR_111966     SALL2
28  chr17   21847943       22220417  NM_001190452  MTRNR2L1
29  chr17   21847943       22220417     NR_027084  FLJ36000,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21809183       21983072  NM_001163380         RAB2B
1   chr14   21809183       21983072  NM_001170629          CHD8
2   chr14   21809183       21983072  NM_001303523          TOX4
3   chr14   21809183       21983072     NM_007192       SUPT16H
4   chr14   21809183       21983072     NM_019852        METTL3
5   chr14   21809183       21983072     NM_020366       RPGRIP1
8   chr14   21809183       21983072     NR_002916        SNORD8
9   chr14   21809183       21983072     NR_003029        SNORD9
10   chr2   50762974       50936863  NM_001330082         NRXN1
11   chr2   50762974       50936863     NR_130470       MIR8485
12  chr20   14672713       14896018     NM_080676       MACROD2
13  chr20   14672713       14896018     NR_037841   MACROD2-AS1
15  chr20   14788858       14916696     NM_080676       MACROD2
16  chr20   14788858       14916696     NR_037841   MACROD2-AS1
18   chr5  106122037      106716441     NM_001962         EFNA5
19   chr5  106122037      106716441     NR_104671  LOC102467213
20   chr6  128605717      128705915  NM_001291982         PTPRK
22   chr6  162816796      163115916     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21820265       22064683  NM_001005465     OR10G3
1   chr14   21820265       22064683  NM_001163380      RAB2B
2   chr14   21820265       22064683  NM_001170629       CHD8
3   chr14   21820265       22064683  NM_001303523       TOX4
4   chr14   21820265       22064683     NM_007192    SUPT16H
5   chr14   21820265       22064683     NM_019852     METTL3
8   chr14   21820265       22064683     NR_002916     SNORD8
9   chr14   21820265       22064683     NR_003029     SNORD9
10  chr14   21820265       22064683     NR_111966      SALL2
12  chr17   29305221       29501276     NM_000267        NF1
14  chr17   29305221       29501276  NM_001184992     RNF135
16  chr17   29305221       29501276     NR_039886    MIR4733
17   chr2   51963849       52108864     NR_135237  LOC730100
18  chr20   25362470       25561233  NM_001042472     ABHD12
19  chr20   25362470       25561233  NM_001318226       NINL
21  chr20   25362470       25561233     NM_021067      GINS1
22   chr4    9000329       10588934     NM_000798       DRD5
23   chr4    9000329       10588934  NM_001001290     SLC2A9
24   chr4    9000329       10588934  NM_001040448    DEFB131
25   chr4    9000329       10588934  NM_001242326   USP17L25
33   chr4    9000329       10588934  NM_001256852   USP17L10
34   chr4    9000329       10588934  NM_001256853   USP17L12
36   chr4    9000329       10588934  NM_001256854   USP17L11
39   chr4    9000329       10588934  NM_001256855   USP17L13
40   chr4    9000329       10588934  NM_001256857   USP17L17
41   chr4    9000329       10588934  NM_001256860   USP17L19
42   chr4    9000329       10588934  NM_001256861   USP17L20
43   chr4    9000329       10588934  NM_001256894   USP17L15
44   chr4    9000329       10588934     NM_005112       WDR1
46   chr4    9000329       10588934     NM_052964       CLNK
47   chr4    9000329       10588934     NM_053042    ZNF518B
48   chr4    9000329       10588934     NR_027279   USP17L6P
49   chr4    9000329       10588934     NR_031688   MIR548I2
50   chr4    9000329       10588934     NR_036090    MIR3138
51   chr4    9000329       10588934     NR_046416   USP17L9P
52   chr7  110446576      110764455  NM_001099658      LRRN3
53   chr7  110446576      110764455  NM_001244606     IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr17    3847782        3951218     NM_015113        ZZEF1
1  chr17    3847782        3951218     NM_174955       ATP2A3
2  chr20   14707608       14869205     NM_080676      MACROD2
3  chr20   14707608       14869205     NR_037841  MACROD2-AS1
4   chr7  110547760      110653450  NM_001244606       IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21930444       22063603  NM_001005465        OR10G3
1   chr14   21930444       22063603  NM_001163380         RAB2B
2   chr14   21930444       22063603  NM_001303523          TOX4
3   chr14   21930444       22063603     NM_019852        METTL3
5   chr14   21930444       22063603     NR_111966         SALL2
7    chr2  110205903      110306947  NM_001099289        SH3RF3
8    chr2  110205903      110306947  NM_001321504        SEPT10
10   chr7   64030586       64321444  NM_001160183        ZNF138
11   chr7   64030586       64321444  NM_001282360        ZNF107
12   chr7   64030586       64321444     NR_033245     LOC641746
14   chr7   64030586       64321444     NR_077227  LOC100128885
16   chr7   64030586       64321444     NR_106898       MIR6839,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0     chr1  145336514      145478434  NM_001039888      ANKRD34A
1     chr1  145336514      145478434  NM_001277444         NBPF9
2     chr1  145336514      145478434  NM_001278267        NBPF20
3     chr1  145336514      145478434  NM_001302371        NBPF10
4     chr1  145336514      145478434  NM_001313972         TXNIP
6     chr1  145336514      145478434     NM_032305       POLR3GL
7     chr1  145336514      145478434     NM_145277          HFE2
8     chr1  145336514      145478434     NM_153713         LIX1L
9     chr1  145336514      145478434     NR_104217       NBPF25P
10    chr1  145336514      145478434     NR_125967  LOC101928979
11   chr11   55752561       59279651     NM_000062      SERPING1
12   chr11   55752561       59279651     NM_000614          CNTF
13   chr11   55752561       59279651  NM_001001921        OR5AS1
14   chr11   55752561       59279651  NM_001001954         OR5A2
15   chr11   55752561       59279651  NM_001002907         OR8K1
16   chr11   55752561       59279651  NM_001002925        OR5AP2
17   chr11   55752561       59279651  NM_001003750         OR8I2
18   chr11   55752561       59279651  NM_001004058         OR8K5
19   chr11   55752561       59279651  NM_001004064         OR8J3
20   chr11   55752561       59279651  NM_001004458         OR1S1
21   chr11   55752561       59279651  NM_001004459         OR1S2
22   chr11   55752561       59279651  NM_001004471        OR10Q1
23   chr11   55752561       59279651  NM_001004705        OR4D10
24   chr11   55752561       59279651  NM_001004706        OR4D11
25   chr11   55752561       59279651  NM_001004708         OR4D6
26   chr11   55752561       59279651  NM_001004728         OR5A1
27   chr11   55752561       59279651  NM_001004729        OR5AN1
28   chr11   55752561       59279651  NM_001004730        OR5AR1
29   chr11   55752561       59279651  NM_001004733        OR5B12
30   chr11   55752561       59279651  NM_001004740         OR5M1
..     ...        ...            ...           ...           ...
90   chr11   55752561       59279651     NM_033396      TNKS1BP1
91   chr11   55752561       59279651     NM_053023         ZFP91
93   chr11   55752561       59279651     NM_145008         YPEL4
94   chr11   55752561       59279651     NM_145016       GLYATL2
95   chr11   55752561       59279651     NM_178570       RTN4RL2
97   chr11   55752561       59279651     NM_198947       FAM111B
99   chr11   55752561       59279651     NM_207374        OR10W1
100  chr11   55752561       59279651     NR_024091    ZFP91-CNTF
101  chr11   55752561       59279651     NR_027688        OR7E5P
102  chr11   55752561       59279651     NR_029673       MIR130A
103  chr11   55752561       59279651     NR_033853     LOC283194
104  chr11   55752561       59279651     NR_036445       OR5AK4P
105  chr11   55752561       59279651     NR_037645          TMX2
106  chr11   55752561       59279651     NR_037646   TMX2-CTNND1
107  chr11   55752561       59279651     NR_106743       MIR6128
108  chr11   55752561       59279651     NR_110137  LOC101927120
109  chr11   55752561       59279651     NR_110184  LOC101927204
110  chr15   28435498       29346374  NM_001130414         APBA2
111  chr15   28435498       29346374  NM_001282468       GOLGA8M
112  chr15   28435498       29346374     NM_004667         HERC2
113  chr15   28435498       29346374     NR_026589       WHAMMP2
114  chr15   28435498       29346374     NR_033351       GOLGA8F
116  chr15   28435498       29346374     NR_033353       GOLGA8G
118  chr15   28435498       29346374     NR_036443       HERC2P9
119  chr15   28435498       29346374     NR_036475  LOC100289656
120  chr15   28435498       29346374     NR_037599     PDCD6IPP2
121  chr15   28435498       29346374     NR_039734     MIR4509-3
123  chr15   28435498       29346374     NR_047567     GOLGA6L7P
124  chr16   71119329       71227716  NM_001198542         HYDIN
127  chr16   71090209       71201482  NM_001198542         HYDIN

[112 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr22   16997960       17772037  NM_001037814               GAB4
1   chr22   16997960       17772037  NM_001163079              CECR6
2   chr22   16997960       17772037  NM_001282227              CECR1
4   chr22   16997960       17772037  NM_001289905             IL17RA
5   chr22   16997960       17772037     NM_014406             CCT8L2
6   chr22   16997960       17772037     NM_017829              CECR5
9   chr22   16997960       17772037     NM_175878               XKR3
11  chr22   16997960       17772037     NR_001591             TPTEP1
12  chr22   16997960       17772037     NR_003607            HSFY1P1
13  chr22   16997960       17772037     NR_015352              CECR7
14  chr22   16997960       17772037     NR_024482          CECR5-AS1
15  chr22   16997960       17772037     NR_038398              CECR3
16  chr22   16997960       17772037     NR_040115  ANKRD62P1-PARP4P3
17  chr22   16997960       17772037     NR_103793       LOC100996342
18  chr22   16997960       17772037     NR_134584       LOC101929350
19   chr9   28650957       28783099  NM_001258282             LINGO2
21   chr9   41857991       42030974     NR_003670             FGF7P3
22   chr9   41857991       42030974     NR_015363              GLIDR
25   chr9   41857991       42030974     NR_126048       LOC102724238
26   chr9   41857991       42030974     NR_126049          LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21851183       22004120  NM_001163380         RAB2B
1   chr14   21851183       22004120  NM_001170629          CHD8
2   chr14   21851183       22004120  NM_001303523          TOX4
3   chr14   21851183       22004120     NM_007192       SUPT16H
4   chr14   21851183       22004120     NM_019852        METTL3
7   chr14   21851183       22004120     NR_002916        SNORD8
8   chr14   21851183       22004120     NR_003029        SNORD9
9   chr14   21851183       22004120     NR_111966         SALL2
11  chr14   45687715       45956930     NM_018353      MIS18BP1
12   chr2   97215241       97793915  NM_001115016        KANSL3
13   chr2   97215241       97793915  NM_001122646       FAM178B
14   chr2   97215241       97793915  NM_001164315       ANKRD36
16   chr2   97215241       97793915  NM_001293083        FER1L5
17   chr2   97215241       97793915  NM_001319085        ARID5A
19   chr2   97215241       97793915  NM_001320849        FAHD2B
20   chr2   97215241       97793915  NM_001322354        LMAN2L
21   chr2   97215241       97793915     NM_016466       ANKRD39
23   chr2   97215241       97793915     NM_017623         CNNM3
24   chr2   97215241       97793915     NM_017789        SEMA4C
25   chr2   97215241       97793915     NM_020184         CNNM4
27   chr2   97215241       97793915     NM_144994       ANKRD23
29   chr2   97215241       97793915     NR_036074       MIR3127
31   chr2   97215241       97793915     NR_110209  LOC101927053
32   chr3    1421734        1539825  NM_001289081         CNTN6
33   chr5  109854989      109975806  NM_001039763       TMEM232
34   chr7   64082677       64192409  NM_001282360        ZNF107
36   chr7   64082677       64192409     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88983930       89099141  NM_001099338      NUTM2A
1   chr10   88983930       89099141     NR_024397  NUTM2A-AS1
2   chr14   21787479       21932152  NM_001163380       RAB2B
3   chr14   21787479       21932152  NM_001170629        CHD8
4   chr14   21787479       21932152     NM_007192     SUPT16H
5   chr14   21787479       21932152     NM_020366     RPGRIP1
8   chr14   21787479       21932152     NR_002916      SNORD8
9   chr14   21787479       21932152     NR_003029      SNORD9
10   chr7   88912517       89021375     NM_181646     ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68090707       68271902  NM_001127384        CTNNA3
2   chr14   21747603       21890334  NM_001170629          CHD8
3   chr14   21747603       21890334     NM_007192       SUPT16H
4   chr14   21747603       21890334     NM_020366       RPGRIP1
6   chr14   21747603       21890334     NR_002916        SNORD8
7   chr14   21747603       21890334     NR_003029        SNORD9
8   chr15   98197891       98366905     NR_024172     LINC00923
9    chr2  130554336      130863971  NM_001099771         POTEF
10   chr2  130554336      130863971     NM_032144         RAB6C
11   chr2  130554336      130863971     NR_026740     LOC389033
12   chr2  130554336      130863971     NR_026758        FAR2P1
13   chr2  130554336      130863971     NR_036537     RAB6C-AS1
14   chr2  130554336      130863971     NR_110285  LOC101927924
15   chr6  162702931      162865537     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   59143441       59526967  NM_001085487      MYSM1
1    chr1   59143441       59526967     NM_002228        JUN
2    chr1   59143441       59526967     NR_034014  LINC01135
3    chr1   59143441       59526967     NR_110626  LINC01358
4   chr13   25246492       25467049  NM_001184993      RNF17
5   chr13   25246492       25467049  NM_001185085     ATP12A
6   chr13   25246492       25467049     NR_047594      CENPJ
7    chr5   17744842       17876026     NR_134286  LOC646241
9    chr6  162835331      162996985     NM_013988      PARK2
10   chr7   64103783       64419723  NM_001160183     ZNF138
11   chr7   64103783       64419723  NM_001282360     ZNF107
12   chr7   64103783       64419723     NM_021148     ZNF273
15   chr7   64103783       64419723     NR_106898    MIR6839
16   chr9  101917062      102044004     NM_006808     SEC61B
17   chr9  101917062      102044004     NM_033087       ALG2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143390504      143860073  NM_001123068       PPIAL4G
1    chr1  143390504      143860073     NR_104014     LINC01138
2    chr1  143390504      143860073     NR_106967       MIR6077
3    chr1  143390504      143860073     NR_111930  LOC100132057
4    chr1  190024296      190304601  NM_001317188        BRINP3
6   chr14   21772347       21981812  NM_001163380         RAB2B
7   chr14   21772347       21981812  NM_001170629          CHD8
8   chr14   21772347       21981812  NM_001303523          TOX4
9   chr14   21772347       21981812     NM_007192       SUPT16H
10  chr14   21772347       21981812     NM_019852        METTL3
11  chr14   21772347       21981812     NM_020366       RPGRIP1
14  chr14   21772347       21981812     NR_002916        SNORD8
15  chr14   21772347       21981812     NR_003029        SNORD9
16  chr19   21609257       21710301  NM_001001415        ZNF429
17  chr19   21609257       21710301     NM_175910        ZNF493
18  chr19   21609257       21710301     NR_037194     LINC00664
19   chr2   52850954       53138909     NR_039630       MIR4431,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28770660       29336797  NM_001130414         APBA2
1   chr15   28770660       29336797  NM_001282468       GOLGA8M
2   chr15   28770660       29336797     NR_026589       WHAMMP2
3   chr15   28770660       29336797     NR_033351       GOLGA8F
4   chr15   28770660       29336797     NR_033353       GOLGA8G
5   chr15   28770660       29336797     NR_036443       HERC2P9
6   chr15   28770660       29336797     NR_036475  LOC100289656
7   chr15   28770660       29336797     NR_037599     PDCD6IPP2
8   chr15   28770660       29336797     NR_047567     GOLGA6L7P
9    chr4  165888089      166076087  NM_001012414        TRIM61
10   chr4  165888089      166076087  NM_001100389       TMEM192
11   chr4  165888089      166076087     NM_152620        TRIM60
12   chr7   64054720       64679467  NM_001007253        ERV3-1
13   chr7   64054720       64679467  NM_001160183        ZNF138
14   chr7   64054720       64679467  NM_001282360        ZNF107
15   chr7   64054720       64679467     NM_015852        ZNF117
16   chr7   64054720       64679467     NM_021148        ZNF273
17   chr7   64054720       64679467     NR_033416        CCT6P3
19   chr7   64054720       64679467     NR_077227  LOC100128885
21   chr7   64054720       64679467     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr12   27157549       27434943  NM_001080406   C12orf71
1  chr12   27157549       27434943  NM_001271811      MED21
2  chr12   27157549       27434943     NM_015000     STK38L
3  chr12   27157549       27434943     NM_016551     TM7SF3
4  chr14   42070494       42328642  NM_001346175      LRFN5
5  chr15   28780013       29026364  NM_001282468    GOLGA8M
6  chr15   28780013       29026364     NR_026589    WHAMMP2
7  chr15   28780013       29026364     NR_036443    HERC2P9
8   chr2   34190042       34363942     NR_126403  LINC01317
9   chr2   34190042       34363942     NR_132381  LINC01318,     chrom  cnv_start  cnv_terminate       tx_name        gene_name
0    chr1    2824855        3496384     NM_001409            MEGF6
1    chr1    2824855        3496384     NM_014448         ARHGEF16
2    chr1    2824855        3496384     NM_080431           ACTRT2
3    chr1    2824855        3496384     NM_199454           PRDM16
4    chr1    2824855        3496384     NR_015440        LINC00982
6    chr1    2824855        3496384     NR_030277          MIR551A
7    chr1    2824855        3496384     NR_036215          MIR4251
8   chr14   21856072       22018389  NM_001163380            RAB2B
9   chr14   21856072       22018389  NM_001170629             CHD8
10  chr14   21856072       22018389  NM_001303523             TOX4
11  chr14   21856072       22018389     NM_019852           METTL3
14  chr14   21856072       22018389     NR_002916           SNORD8
15  chr14   21856072       22018389     NR_003029           SNORD9
16  chr14   21856072       22018389     NR_111966            SALL2
18  chr14   42047417       42190141  NM_001346175            LRFN5
19   chr2  110148283      111540631     NM_000272            NPHP1
20   chr2  110148283      111540631  NM_001037866            RGPD6
22   chr2  110148283      111540631  NM_001099289           SH3RF3
25   chr2  110148283      111540631  NM_001142807            ACOXL
26   chr2  110148283      111540631  NM_001205288            LIMS4
28   chr2  110148283      111540631  NM_001321504           SEPT10
30   chr2  110148283      111540631     NM_004336             BUB1
31   chr2  110148283      111540631     NM_005054            RGPD5
33   chr2  110148283      111540631     NM_005434             MALL
34   chr2  110148283      111540631     NM_023016           SOWAHC
35   chr2  110148283      111540631     NR_027063        LINC00116
36   chr2  110148283      111540631     NR_027142        LOC440895
38   chr2  110148283      111540631     NR_027145  LIMS3-LOC440895
40   chr2  110148283      111540631     NR_027244        LINC01106
41   chr2  110148283      111540631     NR_027467            LIMS3
43   chr2  110148283      111540631     NR_036225          MIR4267
44   chr2  110148283      111540631     NR_037626     LOC100507334
45   chr2  110148283      111540631     NR_039941        MIR4436B1
47   chr2  110148283      111540631     NR_046110        LINC01123
49   chr2  110148283      111540631     NR_132975         SNORD132
50   chr2  110148283      111540631     NR_135529     LOC105373553,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49638228       49763016  NM_001323575         AGBL4
1    chr1   49638228       49763016     NR_125988  LOC101929721
2    chr1  145341732      145726721  NM_001012758        NUDT17
3    chr1  145341732      145726721  NM_001039888      ANKRD34A
4    chr1  145341732      145726721  NM_001184795        PEX11B
5    chr1  145341732      145726721  NM_001277444         NBPF9
6    chr1  145341732      145726721  NM_001278267        NBPF20
7    chr1  145341732      145726721  NM_001280799       ANKRD35
8    chr1  145341732      145726721  NM_001302371        NBPF10
9    chr1  145341732      145726721  NM_001303040        ITGA10
10   chr1  145341732      145726721  NM_001303456        POLR3C
11   chr1  145341732      145726721  NM_001313972         TXNIP
13   chr1  145341732      145726721     NM_005105         RBM8A
14   chr1  145341732      145726721     NM_006099         PIAS3
17   chr1  145341732      145726721     NM_007053         CD160
18   chr1  145341732      145726721     NM_014455        RNF115
19   chr1  145341732      145726721     NM_032305       POLR3GL
20   chr1  145341732      145726721     NM_145277          HFE2
21   chr1  145341732      145726721     NM_153713         LIX1L
22   chr1  145341732      145726721     NR_002328        GNRHR2
26   chr1  145341732      145726721     NR_104217       NBPF25P
27   chr1  145341732      145726721     NR_106794       MIR6736
28   chr1  145341732      145726721     NR_125967  LOC101928979
29  chr11   83994816       84202282  NM_001142699          DLG2
32  chr12   80971375       81165706  NM_001145026         PTPRQ
33  chr12   80971375       81165706     NM_002469          MYF6
34  chr12   80971375       81165706     NM_005593          MYF5
35  chr12   80971375       81165706     NR_120468     LINC01490
36  chr14   21756849       22923047  NM_001001912         OR4E2
37  chr14   21756849       22923047  NM_001005465        OR10G3
38  chr14   21756849       22923047  NM_001005466        OR10G2
39  chr14   21756849       22923047  NM_001163380         RAB2B
40  chr14   21756849       22923047  NM_001170629          CHD8
41  chr14   21756849       22923047  NM_001303523          TOX4
42  chr14   21756849       22923047  NM_001317107         OR4E1
43  chr14   21756849       22923047     NM_007192       SUPT16H
44  chr14   21756849       22923047     NM_019852        METTL3
45  chr14   21756849       22923047     NM_020366       RPGRIP1
48  chr14   21756849       22923047     NR_002916        SNORD8
49  chr14   21756849       22923047     NR_003029        SNORD9
50  chr14   21756849       22923047     NR_111966         SALL2
52   chr7   64025072       64176446  NM_001282360        ZNF107
53   chr7   64025072       64176446     NR_033245     LOC641746
54   chr7   64025072       64176446     NR_077227  LOC100128885
56   chr7   64025072       64176446     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  244959514      245100305  NM_001312871     COX20
2    chr1  244959514      245100305     NM_004501    HNRNPU
4    chr1  244959514      245100305     NR_132782  SNORA100
5   chr14   21704015       21859975  NM_001170629      CHD8
6   chr14   21704015       21859975     NM_007192   SUPT16H
7   chr14   21704015       21859975     NM_020366   RPGRIP1
9   chr14   21704015       21859975     NM_031314    HNRNPC
10   chr8    4178653        4336264     NM_033225     CSMD1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67968702       68234445  NM_001127384     CTNNA3
2   chr14   21667884       21826386     NM_007192    SUPT16H
3   chr14   21667884       21826386     NM_020366    RPGRIP1
4   chr14   21667884       21826386     NM_031314     HNRNPC
5   chr14   21667884       21826386     NR_038970  LINC00641
7    chr4   66482835       66590684  NM_001281766      EPHA5
10   chr4   66482835       66590684     NR_034138  EPHA5-AS1
11   chr4   72941021       73362478     NM_004885     NPFFR2
12   chr4   72941021       73362478     NM_014243    ADAMTS3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  132175892      132299932  NM_001012393      OPCML
1   chr11  132175892      132299932  NM_001048209        NTM
6   chr18   63804013       64262967     NM_021153      CDH19
7    chr3    1906494        2472367  NM_001206955      CNTN4
9    chr3    1906494        2472367     NR_046555  CNTN4-AS2
10   chr6   97422695       97532558  NM_001286251     KLHL32
14   chr9    5964785        6166650  NM_001017969   KIAA2026
15   chr9    5964785        6166650  NM_001243202     RANBP6
16   chr9    5964785        6166650     NR_039811    MIR4665,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21886646       23205158  NM_001001912         OR4E2
1   chr14   21886646       23205158  NM_001005465        OR10G3
2   chr14   21886646       23205158  NM_001005466        OR10G2
3   chr14   21886646       23205158  NM_001163380         RAB2B
4   chr14   21886646       23205158  NM_001170629          CHD8
5   chr14   21886646       23205158  NM_001303523          TOX4
6   chr14   21886646       23205158  NM_001317107         OR4E1
7   chr14   21886646       23205158     NM_001344          DAD1
8   chr14   21886646       23205158     NM_019852        METTL3
10  chr14   21886646       23205158     NM_022060         ABHD4
12  chr14   21886646       23205158     NR_111966         SALL2
14   chr6   89415886       89593779  NM_001286428         RNGTT
15   chr6   97429777       98314614  NM_001286251        KLHL32
19   chr6   97429777       98314614     NM_198468        MMS22L
20   chr6   97429777       98314614     NR_031679      MIR548H3
21   chr6   97429777       98314614     NR_110757  LOC101927314,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr19   34636878       34915003  NM_001289789                GPI
3   chr19   34636878       34915003     NM_014686           KIAA0355
4   chr19   34636878       34915003     NM_015578             LSM14A
5   chr19   34636878       34915003     NM_032346             PDCD2L
6   chr22   17135771       17570394  NM_001037814               GAB4
7   chr22   17135771       17570394  NM_001289905             IL17RA
8   chr22   17135771       17570394     NM_175878               XKR3
9   chr22   17135771       17570394     NR_003607            HSFY1P1
10  chr22   17135771       17570394     NR_015352              CECR7
11  chr22   17135771       17570394     NR_040115  ANKRD62P1-PARP4P3
12  chr22   17135771       17570394     NR_134584       LOC101929350
13   chr9   28566439       28823908  NM_001258282             LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  100662920      100774436  NM_001166244         HPSE2
1   chr10  100662920      100774436     NR_106762       MIR6507
2   chr22   19039676       19174769  NM_001184781         DGCR2
3   chr22   19039676       19174769  NM_001256534       SLC25A1
4   chr22   19039676       19174769     NM_001835        CLTCL1
5   chr22   19039676       19174769     NM_005315          GSC2
7   chr22   19039676       19174769     NM_022719        DGCR14
8   chr22   19039676       19174769     NM_053006         TSSK2
9   chr22   19039676       19174769     NR_103767     LINC01311
10   chr9   44260130       44401327     NR_121564  LOC101927827,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   59157731       59329341  NM_001085487       MYSM1
1    chr1   59157731       59329341     NM_002228         JUN
2    chr1   59157731       59329341     NR_034014   LINC01135
3   chr14   21916112       22204008  NM_001001912       OR4E2
4   chr14   21916112       22204008  NM_001005465      OR10G3
5   chr14   21916112       22204008  NM_001005466      OR10G2
6   chr14   21916112       22204008  NM_001163380       RAB2B
7   chr14   21916112       22204008  NM_001303523        TOX4
8   chr14   21916112       22204008  NM_001317107       OR4E1
9   chr14   21916112       22204008     NM_019852      METTL3
11  chr14   21916112       22204008     NR_111966       SALL2
13  chr14   45490131       45668574  NM_001308120     FAM179B
14  chr14   45490131       45668574  NM_001308133       FANCM
16  chr14   45490131       45668574     NM_002013       FKBP3
17  chr14   45490131       45668574     NM_017922      PRPF39
18  chr14   45490131       45668574     NR_003691    SNORD127
19  chr15   28764757       28915393     NR_033351     GOLGA8F
20  chr15   28764757       28915393     NR_033353     GOLGA8G
21  chr15   28764757       28915393     NR_036443     HERC2P9
22  chr15   43935949       44062536  NM_001282309    CATSPER2
23  chr15   43935949       44062536  NM_001321927      CKMT1A
26  chr15   43935949       44062536     NM_005313       PDIA3
28  chr15   43935949       44062536     NR_002318  CATSPER2P1
31  chr19   47788216       47968239  NM_001009813       MEIS3
32  chr19   47788216       47968239  NM_001271749       C5AR2
36  chr19   47788216       47968239     NM_001736       C5AR1
37  chr19   47788216       47968239     NM_014681       DHX34
38  chr19   47788216       47968239     NM_015063      SLC8A2
40   chr9   41451026       41580287  NM_001113541   SPATA31A5
41   chr9   41451026       41580287     NM_015667   SPATA31A7
42   chr9   41451026       41580287     NR_026803     FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   80998627       81176208  NM_001145026      PTPRQ
1   chr12   80998627       81176208     NM_002469       MYF6
2   chr12   80998627       81176208     NM_005593       MYF5
3   chr12   80998627       81176208     NR_120468  LINC01490
4   chr14   21720223       21893206  NM_001170629       CHD8
5   chr14   21720223       21893206     NM_007192    SUPT16H
6   chr14   21720223       21893206     NM_020366    RPGRIP1
8   chr14   21720223       21893206     NM_031314     HNRNPC
9   chr14   21720223       21893206     NR_002916     SNORD8
10  chr14   21720223       21893206     NR_003029     SNORD9
11  chr16   28450469       28685997     NM_000086       CLN3
13  chr16   28450469       28685997  NM_001042483      NUPR1
14  chr16   28450469       28685997     NM_001054    SULT1A2
18  chr16   28450469       28685997  NM_001310136     NPIPB8
19  chr16   28450469       28685997     NM_018690      APOBR
20  chr16   28450469       28685997     NM_138414      SGF29
21  chr16   28450469       28685997     NM_145659       IL27
23  chr16   28450469       28685997     NM_177529    SULT1A1
26   chr3    1099701        1296676  NM_001289081      CNTN6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4311539        4779030  NM_001004137        OR52M1
1   chr11    4311539        4779030  NM_001004751        OR51D1
2   chr11    4311539        4779030  NM_001005161        OR52B4
3   chr11    4311539        4779030  NM_001005169        OR52I1
4   chr11    4311539        4779030  NM_001005170        OR52I2
5   chr11    4311539        4779030  NM_001005171        OR52K1
6   chr11    4311539        4779030  NM_001005172        OR52K2
7   chr11    4311539        4779030     NM_003141        TRIM21
8   chr11    4311539        4779030     NM_018073        TRIM68
9   chr11    4311539        4779030     NM_030774        OR51E2
10  chr11    4311539        4779030     NM_144663      C11orf40
11  chr11    4311539        4779030     NM_152430        OR51E1
12  chr14   21920772       22040482  NM_001005465        OR10G3
13  chr14   21920772       22040482  NM_001163380         RAB2B
14  chr14   21920772       22040482  NM_001303523          TOX4
15  chr14   21920772       22040482     NM_019852        METTL3
17  chr14   21920772       22040482     NR_111966         SALL2
19  chr15   28738454       28973139  NM_001282468       GOLGA8M
20  chr15   28738454       28973139     NR_033351       GOLGA8F
21  chr15   28738454       28973139     NR_033353       GOLGA8G
22  chr15   28738454       28973139     NR_036443       HERC2P9
23   chr2   34544504       35115798     NR_126404     LINC01320
24   chr8   97801005       98074418     NM_016134           CPQ
25   chr8   97801005       98074418     NR_125390  LOC101927066,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21945106       22122480  NM_001005465        OR10G3
1   chr14   21945106       22122480  NM_001005466        OR10G2
2   chr14   21945106       22122480  NM_001303523          TOX4
3   chr14   21945106       22122480     NM_019852        METTL3
4   chr14   21945106       22122480     NM_032846         RAB2B
5   chr14   21945106       22122480     NR_111966         SALL2
7   chr16   21508068       21836010  NM_001077180        METTL9
8   chr16   21508068       21836010  NM_001161683          OTOA
10  chr16   21508068       21836010     NM_005849         IGSF6
13  chr16   21508068       21836010     NR_002594      SLC7A5P2
14  chr16   21508068       21836010     NR_003370        RRN3P1
15  chr16   21508068       21836010     NR_027155        SMG1P3
16  chr16   21508068       21836010     NR_049833     MIR3680-2
17  chr16   21508068       21836010     NR_110930  LOC101927814
18   chr6  162212749      162339544     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   72580506       72793457     NM_013381      TRHDE
1   chr12   72580506       72793457     NR_026836  TRHDE-AS1
3   chr14   21930574       22088538  NM_001005465     OR10G3
4   chr14   21930574       22088538  NM_001163380      RAB2B
5   chr14   21930574       22088538  NM_001303523       TOX4
6   chr14   21930574       22088538     NM_019852     METTL3
8   chr14   21930574       22088538     NR_111966      SALL2
10   chr5   19041725       20392083  NM_001291956      CDH18,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   83459039       84807352     NM_052910       SLITRK1
1   chr13   83459039       84807352     NR_046871     LINC00333
2   chr16   18331680       18532158  NM_001004060         NOMO2
3   chr16   18331680       18532158  NM_001282511        NPIPA8
4   chr16   18331680       18532158     NR_036140     MIR3179-1
5   chr16   18331680       18532158     NR_036142     MIR3180-2
6   chr16   18331680       18532158     NR_036144     MIR3180-3
7   chr16   18331680       18532158     NR_037442     MIR3670-1
8   chr16   18331680       18532158     NR_103772  LOC100288162
9   chr16   18331680       18532158     NR_106971     MIR6511A4
10  chr16   18331680       18532158     NR_107060     MIR6770-2
11   chr4  169251747      169351945  NM_001012967        DDX60L
13   chr6  136978617      137216066     NM_000288          PEX7
14   chr6  136978617      137216066     NM_005923        MAP3K5
15   chr6  136978617      137216066     NR_134635  LOC101928429,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21762789       21923159  NM_001170629          CHD8
1   chr14   21762789       21923159     NM_007192       SUPT16H
2   chr14   21762789       21923159     NM_020366       RPGRIP1
4   chr14   21762789       21923159     NR_002916        SNORD8
5   chr14   21762789       21923159     NR_003029        SNORD9
6    chr7   80066679       80210067  NM_001102386         GNAT3
7    chr8    6746740        6891869  NM_001302265        DEFA1B
8    chr8    6746740        6891869     NM_001925         DEFA4
9    chr8    6746740        6891869     NM_001926         DEFA6
10   chr8    6746740        6891869     NM_004084         DEFA1
12   chr8    6746740        6891869     NM_005217         DEFA3
13   chr8    6746740        6891869     NR_029386       DEFA10P
14   chr8    6746740        6891869     NR_036686        DEFT1P
16   chr8    6746740        6891869     NR_073407        DEFA8P
17   chr8    6746740        6891869     NR_073408        DEFA9P
18   chr8    6746740        6891869     NR_073421       DEFA11P
19   chr9   67202200       67352016     NR_002817        AQP7P1
20   chr9   67202200       67352016     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12803184       12945915  NM_001009611    PRAMEF4
1    chr1   12803184       12945915  NM_001013631   HNRNPCL1
2    chr1   12803184       12945915  NM_001080830   PRAMEF12
3    chr1   12803184       12945915  NM_001146181   HNRNPCL3
4    chr1   12803184       12945915  NM_001146344   PRAMEF11
5    chr1   12803184       12945915  NM_001294139    PRAMEF1
6    chr1   12803184       12945915  NM_001302551   HNRNPCL4
8    chr1   12803184       12945915     NM_023014    PRAMEF2
9    chr1   12803184       12945915     NM_152290   C1orf158
10  chr14   21920373       22061486  NM_001005465     OR10G3
11  chr14   21920373       22061486  NM_001163380      RAB2B
12  chr14   21920373       22061486  NM_001303523       TOX4
13  chr14   21920373       22061486     NM_019852     METTL3
15  chr14   21920373       22061486     NR_111966      SALL2
17   chr9   30394867       31261752     NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143518448      144103510  NM_001123068       PPIAL4G
1    chr1  143518448      144103510  NM_001287385        FAM72C
2    chr1  143518448      144103510  NM_001345942        FAM72D
6    chr1  143518448      144103510     NR_104014     LINC01138
7    chr1  143518448      144103510     NR_106967       MIR6077
8    chr1  143518448      144103510     NR_111930  LOC100132057
10  chr10   56961037       57562982  NM_001190478      MTRNR2L5
11  chr15   20718238       20965726  NM_001145004      GOLGA6L6
12  chr15   20718238       20965726     NR_027411      GOLGA8CP
13  chr15   20718238       20965726     NR_027992        NBEAP1
14   chr5   19572629       19674087  NM_001291956         CDH18
17   chr7   69069018       69180530  NM_001127231         AUTS2
19   chr9   11949714       13507400     NM_000550         TYRP1
20   chr9   11949714       13507400  NM_001261407          MPDZ
22   chr9   11949714       13507400     NM_203403       LURAP1L
23   chr9   11949714       13507400     NR_033863      FLJ41200
24   chr9   11949714       13507400     NR_125775   LURAP1L-AS1
25   chr9   11949714       13507400     NR_132976      SNORD137
26   chr9   41483699       41812506  NM_001113541     SPATA31A5
27   chr9   41483699       41812506     NM_015667     SPATA31A7
28   chr9   41483699       41812506     NR_003528       ZNF658B
29   chr9   41483699       41812506     NR_026803       FAM74A1
30   chr9   67127983       67740056     NR_002817        AQP7P1
31   chr9   67127983       67740056     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27646221       28531058  NM_001034842        PTCHD3
1   chr10   27646221       28531058  NM_001242702           MKX
2   chr10   27646221       28531058  NM_001256411         RAB18
3   chr10   27646221       28531058  NM_001290020         ARMC4
7   chr10   27646221       28531058     NM_173496          MPP7
8   chr10   27646221       28531058     NR_121652       MKX-AS1
9   chr10   27646221       28531058     NR_132973      SNORD130
11  chr14   21832084       21962730  NM_001163380         RAB2B
12  chr14   21832084       21962730  NM_001170629          CHD8
13  chr14   21832084       21962730  NM_001303523          TOX4
14  chr14   21832084       21962730     NM_007192       SUPT16H
17  chr14   21832084       21962730     NR_002916        SNORD8
18  chr14   21832084       21962730     NR_003029        SNORD9
19  chr14   45714551       45892561     NM_018353      MIS18BP1
20  chr19   33114679       33328079  NM_001105570        NUDT19
21  chr19   33114679       33328079  NM_001110822        TDRD12
22  chr19   33114679       33328079     NM_014270        SLC7A9
23  chr19   33114679       33328079     NM_032139       ANKRD27
24  chr19   33114679       33328079     NM_207391        RGS9BP
25   chr2   97314252       97426677  NM_001293083        FER1L5
26   chr2   97314252       97426677  NM_001322354        LMAN2L
27   chr2   97314252       97426677     NM_020184         CNNM4
29  chr21   30030451       30303305  NM_001320766          LTN1
30  chr21   30030451       30303305     NM_013240        N6AMT1
33  chr22   17188990       17321317     NM_175878          XKR3
34  chr22   17188990       17321317     NR_003607       HSFY1P1
35  chr22   17188990       17321317     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   16277492       16439293  NM_001170798       SLC15A5
1   chr15   28705698       29479775  NM_001130414         APBA2
2   chr15   28705698       29479775  NM_001282468       GOLGA8M
3   chr15   28705698       29479775     NM_015307      FAM189A1
4   chr15   28705698       29479775     NR_026589       WHAMMP2
5   chr15   28705698       29479775     NR_033351       GOLGA8F
6   chr15   28705698       29479775     NR_033353       GOLGA8G
7   chr15   28705698       29479775     NR_036443       HERC2P9
8   chr15   28705698       29479775     NR_036475  LOC100289656
9   chr15   28705698       29479775     NR_037599     PDCD6IPP2
10  chr15   28705698       29479775     NR_039734     MIR4509-3
11  chr15   28705698       29479775     NR_047567     GOLGA6L7P
12  chr17   63565096       63876409  NM_001037325        CEP112,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   16652158       16844112  NM_001114600         SZRD1
1    chr1   16652158       16844112  NM_001145277        NECAP2
2    chr1   16652158       16844112     NM_018994        FBXO42
3    chr1   16652158       16844112     NM_198546       SPATA21
4    chr1   16652158       16844112     NR_023386       CROCCP3
5   chr14   21838309       21955311  NM_001163380         RAB2B
6   chr14   21838309       21955311  NM_001170629          CHD8
7   chr14   21838309       21955311  NM_001303523          TOX4
8   chr14   21838309       21955311     NM_007192       SUPT16H
11  chr14   21838309       21955311     NR_002916        SNORD8
12  chr14   21838309       21955311     NR_003029        SNORD9
13  chr16   68614705       68813468  NM_001317184          CDH1
14  chr16   68614705       68813468  NM_001317195          CDH3
15  chr16   68614705       68813468     NR_106988     MIR7641-2
16  chr17   47969981       49362329     NM_000088        COL1A1
17  chr17   47969981       49362329  NM_001018137          NME2
20  chr17   47969981       49362329  NM_001144070         ABCC3
21  chr17   47969981       49362329  NM_001166131          EME1
22  chr17   47969981       49362329  NM_001168215        TMEM92
23  chr17   47969981       49362329  NM_001199898          PDK2
26  chr17   47969981       49362329  NM_001243877          TOB1
28  chr17   47969981       49362329  NM_001251971         SPAG9
29  chr17   47969981       49362329  NM_001257359        SAMD14
30  chr17   47969981       49362329  NM_001258372       SPATA20
31  chr17   47969981       49362329     NM_001267          CHAD
32  chr17   47969981       49362329  NM_001288968         ACSF2
33  chr17   47969981       49362329  NM_001330330        LUC7L3
34  chr17   47969981       49362329  NM_001330341       WFIKKN2
35  chr17   47969981       49362329     NM_001934          DLX4
36  chr17   47969981       49362329     NM_002204         ITGA3
41  chr17   47969981       49362329     NM_005220          DLX3
43  chr17   47969981       49362329     NM_016001         UTP18
44  chr17   47969981       49362329     NM_016504        MRPL27
45  chr17   47969981       49362329     NM_017643         MBTD1
46  chr17   47969981       49362329     NM_017957          EPN3
47  chr17   47969981       49362329     NM_018346         RSAD1
48  chr17   47969981       49362329     NM_018509        LRRC59
49  chr17   47969981       49362329     NM_018896       CACNA1G
50  chr17   47969981       49362329     NM_022167         XYLT2
51  chr17   47969981       49362329     NM_032133       MYCBPAP
52  chr17   47969981       49362329     NM_032595       PPP1R9B
53  chr17   47969981       49362329     NM_052855       ANKRD40
57  chr17   47969981       49362329     NM_198175          NME1
58  chr17   47969981       49362329     NR_024193         HILS1
59  chr17   47969981       49362329     NR_037149     NME1-NME2
60  chr17   47969981       49362329     NR_038230     LOC284080
61  chr17   47969981       49362329     NR_038439   CACNA1G-AS1
62  chr17   47969981       49362329     NR_038458      TOB1-AS1
63  chr17   47969981       49362329     NR_073199     LINC00483
64  chr17   47969981       49362329     NR_107026       MIR8059
66  chr17   47969981       49362329     NR_110806  LOC101927230
67  chr17   47969981       49362329     NR_125805    TMEM92-AS1
68  chr17   47969981       49362329     NR_135553          SGCA
69  chr17   47969981       49362329     NR_135675  LOC105371824
70   chr2   50840494       51152301  NM_001330079         NRXN1
73   chr2   50840494       51152301     NR_130470       MIR8485
74   chr3     709572         820441     NR_110118     LINC01266
75   chr6  162555323      162759271     NM_013988         PARK2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr13   41319314       41637703  NM_001145353      ELF1
1  chr13   41319314       41637703     NM_005830    MRPS31
2  chr13   41319314       41637703     NM_007187      WBP4
3  chr13   41319314       41637703     NM_014252  SLC25A15
5  chr13   41319314       41637703     NR_003365   SUGT1P3
6  chr13   41319314       41637703     NR_030352    MIR621
7  chr13   41319314       41637703     NR_038259   TPTE2P5
8   chr7   88289627       88629111     NM_152706   C7orf62
9   chr7   88289627       88629111     NM_181646   ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27142279       27270268  NM_001080406      C12orf71
1   chr12   27142279       27270268  NM_001271811         MED21
2   chr12   27142279       27270268     NM_016551        TM7SF3
3   chr12   72594105       72750633     NM_013381         TRHDE
4   chr12   72594105       72750633     NR_026836     TRHDE-AS1
6   chr14   21818631       23002446  NM_001001912         OR4E2
7   chr14   21818631       23002446  NM_001005465        OR10G3
8   chr14   21818631       23002446  NM_001005466        OR10G2
9   chr14   21818631       23002446  NM_001163380         RAB2B
10  chr14   21818631       23002446  NM_001170629          CHD8
11  chr14   21818631       23002446  NM_001303523          TOX4
12  chr14   21818631       23002446  NM_001317107         OR4E1
13  chr14   21818631       23002446     NM_007192       SUPT16H
14  chr14   21818631       23002446     NM_019852        METTL3
15  chr14   21818631       23002446     NM_020366       RPGRIP1
18  chr14   21818631       23002446     NR_002916        SNORD8
19  chr14   21818631       23002446     NR_003029        SNORD9
20  chr14   21818631       23002446     NR_111966         SALL2
22  chr16    7069408        7236771  NM_001142334        RBFOX1
25  chr17   48004115       48146008     NM_001934          DLX4
26  chr17   48004115       48146008     NM_002204         ITGA3
27  chr17   48004115       48146008     NM_005220          DLX3
29  chr17   48004115       48146008     NR_038230     LOC284080
30  chr19   20276408       21482488  NM_001076675        ZNF626
31  chr19   20276408       21482488  NM_001159293        ZNF737
32  chr19   20276408       21482488  NM_001172671        ZNF430
33  chr19   20276408       21482488  NM_001256171         ZNF85
35  chr19   20276408       21482488  NM_001297560        ZNF708
37  chr19   20276408       21482488  NM_001319127        ZNF431
39  chr19   20276408       21482488     NM_052852        ZNF486
41  chr19   20276408       21482488     NM_182515        ZNF714
42  chr19   20276408       21482488     NR_036053       MIR1270
44  chr19   20276408       21482488     NR_036455       ZNF826P
46   chr2   97166956       97506392  NM_001115016        KANSL3
47   chr2   97166956       97506392  NM_001285485        NEURL3
48   chr2   97166956       97506392  NM_001293083        FER1L5
49   chr2   97166956       97506392  NM_001319085        ARID5A
51   chr2   97166956       97506392  NM_001322354        LMAN2L
52   chr2   97166956       97506392     NM_017623         CNNM3
53   chr2   97166956       97506392     NM_020184         CNNM4
55   chr2   97166956       97506392     NM_144994       ANKRD23
56   chr2   97166956       97506392     NR_036074       MIR3127
59   chr2   97166956       97506392     NR_135564  LOC105373496
60  chr20    8613243        8873572     NM_015192         PLCB1
61   chr7  110631435      110760527  NM_001099658         LRRN3
62   chr7  110631435      110760527  NM_001244606        IMMP2L
64   chr8     520359         649451  NM_001303100        ERICH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   22535131       23824794     NM_000231          SGCG
1   chr13   22535131       23824794     NR_033774       BASP1P1
2   chr13   22535131       23824794     NR_103810     LINC00540
3   chr13   22535131       23824794     NR_138043     LINC00621
4   chr16   16384945       16514574  NM_001004067         NOMO3
5   chr16   16384945       16514574  NM_001282511        NPIPA8
6   chr16   16384945       16514574     NR_036140     MIR3179-1
7   chr16   16384945       16514574     NR_036141     MIR3180-1
8   chr16   16384945       16514574     NR_036142     MIR3180-2
9   chr16   16384945       16514574     NR_036447        PKD1P1
10  chr16   16384945       16514574     NR_103772  LOC100288162
11  chr16   16384945       16514574     NR_106766     MIR6511A1
12  chr16   16384945       16514574     NR_106971     MIR6511A4
13  chr16   16384945       16514574     NR_107060     MIR6770-2
14  chr16   16384945       16514574     NR_128713     MIR3670-4
15  chr16   21815810       21961712  NM_001310148        NPIPB4
16  chr16   21815810       21961712     NR_003370        RRN3P1
17  chr17   47825223       47951385  NM_001077503          TAC4
18  chr17   47825223       47951385  NM_001199158          KAT7
19  chr17   47825223       47951385  NM_001242791      FLJ45513
20  chr17   47825223       47951385     NM_030802       FAM117A
21   chr2  234357874      234469994     NM_003648          DGKD
22   chr2  234357874      234469994     NM_018218         USP40
24   chr4  169195202      169319087  NM_001012967        DDX60L
26   chr4  169195202      169319087     NM_017631         DDX60,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  102388954      102570453     NR_110211          OLFM3
1   chr15   28679143       29342162  NM_001130414          APBA2
2   chr15   28679143       29342162  NM_001282468        GOLGA8M
3   chr15   28679143       29342162     NR_026589        WHAMMP2
4   chr15   28679143       29342162     NR_033351        GOLGA8F
5   chr15   28679143       29342162     NR_033353        GOLGA8G
6   chr15   28679143       29342162     NR_036443        HERC2P9
7   chr15   28679143       29342162     NR_036475   LOC100289656
8   chr15   28679143       29342162     NR_037599      PDCD6IPP2
9   chr15   28679143       29342162     NR_039734      MIR4509-3
10  chr15   28679143       29342162     NR_047567      GOLGA6L7P
11  chr16   14669890       15245569  NM_001134477           PARN
12  chr16   14669890       15245569  NM_001270767          NTAN1
13  chr16   14669890       15245569  NM_001277323         NPIPA3
15  chr16   14669890       15245569  NM_001277324         NPIPA2
17  chr16   14669890       15245569  NM_001285445         PDXDC1
22  chr16   14669890       15245569  NM_001301064           RRN3
24  chr16   14669890       15245569     NM_006985         NPIPA1
25  chr16   14669890       15245569     NM_014287          NOMO1
26  chr16   14669890       15245569     NM_016561           BFAR
27  chr16   14669890       15245569     NR_023387        ABCC6P2
28  chr16   14669890       15245569     NR_036140      MIR3179-1
29  chr16   14669890       15245569     NR_036141      MIR3180-1
30  chr16   14669890       15245569     NR_036142      MIR3180-2
31  chr16   14669890       15245569     NR_103772   LOC100288162
32  chr16   14669890       15245569     NR_106775      MIR6511B1
33  chr16   14669890       15245569     NR_106965      MIR6511B2
34  chr16   14669890       15245569     NR_106970      MIR6511A3
35  chr16   14669890       15245569     NR_107060      MIR6770-2
36  chr16   14669890       15245569     NR_123721  PKD1P6-NPIPP1
38  chr16   14669890       15245569     NR_125434   LOC100505915
39  chr16   14669890       15245569     NR_128713      MIR3670-4
40  chr16   14669890       15245569     NR_133651        PLA2G10
41   chr3   80821133       81054507     NR_132411      LOC728290
42   chr9   15032138       15205021  NM_001168339         TTC39B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143734308      143894678  NM_001123068       PPIAL4G
1    chr1  143734308      143894678     NR_104014     LINC01138
2   chr11   84140096       84298725  NM_001142699          DLG2
4   chr11  132189002      133606360  NM_001012393         OPCML
5   chr11  132189002      133606360  NM_001048209           NTM
9   chr16   14968870       15078178  NM_001285445        PDXDC1
15  chr16   14968870       15078178     NM_006985        NPIPA1
16  chr16   14968870       15078178     NM_014287         NOMO1
17  chr16   14968870       15078178     NR_036140     MIR3179-1
18  chr16   14968870       15078178     NR_036141     MIR3180-1
19  chr16   14968870       15078178     NR_036142     MIR3180-2
20  chr16   14968870       15078178     NR_103772  LOC100288162
21  chr16   14968870       15078178     NR_106970     MIR6511A3
22  chr16   14968870       15078178     NR_107060     MIR6770-2
23  chr16   14968870       15078178     NR_128713     MIR3670-4
24   chr6   20840996       21165532     NM_017774        CDKAL1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244968226      245068303  NM_001312871         COX20
2    chr1  244968226      245068303     NM_004501        HNRNPU
4    chr1  244968226      245068303     NR_132782      SNORA100
5   chr11   95840174       96249039  NM_001261833          JRKL
6   chr11   95840174       96249039  NM_001318737        CCDC82
8   chr11   95840174       96249039     NM_032427         MAML2
9   chr11   95840174       96249039     NR_036125      MIR1260B
10  chr11   95840174       96249039     NR_047481      JRKL-AS1
11  chr11   95840174       96249039     NR_135097  LOC105369443
12  chr16    8579386        8774296  NM_001146336       TMEM114
15  chr16    8579386        8774296     NM_020686          ABAT
16  chr16    8579386        8774296     NM_024109       METTL22
18  chr20   14685817       15189802  NM_001033087       MACROD2
20  chr20   14685817       15189802     NR_037841   MACROD2-AS1
22  chr22   17226594       17459968  NM_001037814          GAB4
23  chr22   17226594       17459968     NM_175878          XKR3
24  chr22   17226594       17459968     NR_003607       HSFY1P1
25  chr22   17226594       17459968     NR_134584  LOC101929350
26  chr22   20113620       20415713  NM_001242313      TMEM191B
27  chr22   20113620       20415713  NM_001243537       CCDC188
28  chr22   20113620       20415713  NM_001278639        RANBP1
31  chr22   20113620       20415713     NM_013373        ZDHHC8
32  chr22   20113620       20415713     NM_023004         RTN4R
33  chr22   20113620       20415713     NM_033257        DGCR6L
34  chr22   20113620       20415713     NR_003563       PI4KAP1
35  chr22   20113620       20415713     NR_026919     LINC00896
36  chr22   20113620       20415713     NR_031618       MIR1286
37  chr22   20113620       20415713     NR_038460     LOC284865
38  chr22   20113620       20415713     NR_136560       FAM230A
39  chr22   20113620       20415713     NR_136572  LOC101927859
40   chr9   41544765       41806363     NR_003528       ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144015539      145536968  NM_001002810       PDE4DIP
3    chr1  144015539      145536968  NM_001039888      ANKRD34A
4    chr1  144015539      145536968  NM_001135789       PPIAL4C
5    chr1  144015539      145536968  NM_001184795        PEX11B
10   chr1  144015539      145536968  NM_001277444         NBPF9
11   chr1  144015539      145536968  NM_001278267        NBPF20
12   chr1  144015539      145536968  NM_001302371        NBPF10
13   chr1  144015539      145536968  NM_001303040        ITGA10
14   chr1  144015539      145536968  NM_001313972         TXNIP
16   chr1  144015539      145536968     NM_004892        SEC22B
17   chr1  144015539      145536968     NM_005105         RBM8A
20   chr1  144015539      145536968     NM_032305       POLR3GL
21   chr1  144015539      145536968     NM_145277          HFE2
22   chr1  144015539      145536968     NM_153713         LIX1L
23   chr1  144015539      145536968     NM_203458      NOTCH2NL
24   chr1  144015539      145536968     NR_002328        GNRHR2
25   chr1  144015539      145536968     NR_003242        PFN1P2
26   chr1  144015539      145536968     NR_024511     LINC00623
29   chr1  144015539      145536968     NR_102405         NBPF8
32   chr1  144015539      145536968     NR_104217       NBPF25P
33   chr1  144015539      145536968     NR_111953     LINC00869
34   chr1  144015539      145536968     NR_125967  LOC101928979
35  chr12  120506786      120609496  NM_001167606         RAB35
36  chr12  120506786      120609496     NM_006836          GCN1
37  chr12  120506786      120609496     NM_207311        BICDL1
38  chr12  120506786      120609496     NR_039719       MIR4498
39   chr2   96005428       96136133  NM_001034914        KCNIP3
41   chr2   96005428       96136133     NM_016044        FAHD2A
42   chr4  190240884      191107769  NM_001286820          FRG2
43   chr4  190240884      191107769     NM_004477          FRG1
44   chr4  190240884      191107769     NR_121644          DBET
45   chr4  190240884      191107769     NR_121679     LINC01262
46   chr4  190240884      191107769     NR_132380     LINC01596
47   chr4  190240884      191107769     NR_135513  LOC105379514,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   80772661       81141920  NM_001318536         SPRY2
3   chr16   18303685       18597761  NM_001004060         NOMO2
4   chr16   18303685       18597761  NM_001282511        NPIPA8
5   chr16   18303685       18597761     NR_003569       ABCC6P1
6   chr16   18303685       18597761     NR_036140     MIR3179-1
7   chr16   18303685       18597761     NR_036142     MIR3180-2
8   chr16   18303685       18597761     NR_036144     MIR3180-3
9   chr16   18303685       18597761     NR_037442     MIR3670-1
10  chr16   18303685       18597761     NR_103772  LOC100288162
11  chr16   18303685       18597761     NR_106971     MIR6511A4
12  chr16   18303685       18597761     NR_107060     MIR6770-2
13  chr16   68598776       70261919     NM_000903          NQO1
14  chr16   68598776       70261919  NM_001039690         CHTF8
16  chr16   68598776       70261919  NM_001136214       CLEC18A
17  chr16   68598776       70261919  NM_001199280          HAS3
18  chr16   68598776       70261919  NM_001199434          NIP7
19  chr16   68598776       70261919  NM_001270453          WWP2
24  chr16   68598776       70261919  NM_001305204         ZFP90
26  chr16   68598776       70261919  NM_001317184          CDH1
27  chr16   68598776       70261919  NM_001317195          CDH3
29  chr16   68598776       70261919     NM_005652         TERF2
30  chr16   68598776       70261919     NM_006750         SNTB2
31  chr16   68598776       70261919     NM_013245         VPS4A
32  chr16   68598776       70261919     NM_017990          PDPR
33  chr16   68598776       70261919     NM_022341           PDF
34  chr16   68598776       70261919     NM_024562        TANGO6
35  chr16   68598776       70261919     NM_030579         CYB5B
36  chr16   68598776       70261919     NM_032382          COG8
37  chr16   68598776       70261919     NM_032830          UTP4
39  chr16   68598776       70261919     NM_144676         TMED6
40  chr16   68598776       70261919     NM_173214         NFAT5
42  chr16   68598776       70261919     NM_173619       CLEC18C
45  chr16   68598776       70261919     NR_003610       PDXDC2P
46  chr16   68598776       70261919     NR_029681        MIR140
47  chr16   68598776       70261919     NR_031719       MIR1538
48  chr16   68598776       70261919     NR_033959        SMG1P7
49  chr16   68598776       70261919     NR_036265     MIR1972-2
50  chr16   68598776       70261919     NR_074074          NOB1
51  chr16   68598776       70261919     NR_106988     MIR7641-2
52  chr16   68598776       70261919     NR_126007     LOC400541
53  chr16   68598776       70261919     NR_135173  LOC105371328
54   chr4   71373981       71541367  NM_001286731          AMTN
55   chr4   71373981       71541367     NM_016519          AMBN
56   chr4   71373981       71541367     NM_031889          ENAM
57   chr4   71373981       71541367     NM_144646        JCHAIN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81519991       81620454     NR_029407     LOC642361
1   chr10   81519991       81620454     NR_120611    NUTM2B-AS1
4   chr14   66286916       68134806     NM_001172          ARG2
5   chr14   66286916       68134806  NM_001256550          MPP5
6   chr14   66286916       68134806     NM_004094        EIF2S1
7   chr14   66286916       68134806     NM_004569          PIGH
8   chr14   66286916       68134806     NM_006370         VTI1B
9   chr14   66286916       68134806     NM_015994       ATP6V1D
10  chr14   66286916       68134806     NM_016445         PLEK2
11  chr14   66286916       68134806     NM_020715       PLEKHH1
12  chr14   66286916       68134806     NM_020806          GPHN
13  chr14   66286916       68134806     NM_173526        FAM71D
14  chr14   66286916       68134806     NM_182526      TMEM229B
15  chr14   66286916       68134806     NR_024338     LINC00238
16  chr14   66286916       68134806     NR_049879       MIR5694
17  chr17    5558765        5689198     NR_040000     LOC339166
18  chr17   63537725       63758481  NM_001037325        CEP112
21  chr17   63537725       63758481     NM_004655         AXIN2
22  chr22   17197685       17619142  NM_001037814          GAB4
23  chr22   17197685       17619142  NM_001163079         CECR6
24  chr22   17197685       17619142  NM_001289905        IL17RA
25  chr22   17197685       17619142     NM_017829         CECR5
28  chr22   17197685       17619142     NM_175878          XKR3
29  chr22   17197685       17619142     NR_003607       HSFY1P1
30  chr22   17197685       17619142     NR_015352         CECR7
31  chr22   17197685       17619142     NR_103793  LOC100996342
32  chr22   17197685       17619142     NR_134584  LOC101929350
33   chr3  163673988      164309417     NR_031665       MIR1263,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143687602      144208163  NM_001123068       PPIAL4G
1   chr1  143687602      144208163  NM_001278267        NBPF20
2   chr1  143687602      144208163  NM_001287385        FAM72C
3   chr1  143687602      144208163  NM_001345942        FAM72D
7   chr1  143687602      144208163     NR_104014     LINC01138
8   chr1  143687602      144208163     NR_111930  LOC100132057
10  chr2  117995036      119552722  NM_001321332        INSIG2
12  chr2  117995036      119552722     NM_006773         DDX18
13  chr2  117995036      119552722     NM_019044        CCDC93
14  chr2  117995036      119552722     NR_110272  LOC101927709
15  chr3    1089018        1224257  NM_001289081         CNTN6
16  chr7  110750266      110894925  NM_001099658         LRRN3
17  chr7  110750266      110894925  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28690722       28836147     NR_033351       GOLGA8F
1   chr15   28690722       28836147     NR_033353       GOLGA8G
2   chr15   28690722       28836147     NR_039734     MIR4509-3
3   chr16   12337357       12439149     NM_032167         SNX29
4   chr16   18413642       18544273  NM_001004060         NOMO2
5   chr16   18413642       18544273  NM_001282511        NPIPA8
6   chr16   18413642       18544273     NR_036140     MIR3179-1
7   chr16   18413642       18544273     NR_036142     MIR3180-2
8   chr16   18413642       18544273     NR_036144     MIR3180-3
9   chr16   18413642       18544273     NR_037442     MIR3670-1
10  chr16   18413642       18544273     NR_103772  LOC100288162
11  chr16   18413642       18544273     NR_106971     MIR6511A4
12  chr16   18413642       18544273     NR_107060     MIR6770-2
13  chr20   14711521       15444361  NM_001033087       MACROD2
15  chr20   14711521       15444361     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21608628       21902613  NM_001004731        OR5AU1
1   chr14   21608628       21902613  NM_001170629          CHD8
2   chr14   21608628       21902613     NM_007192       SUPT16H
3   chr14   21608628       21902613     NM_020366       RPGRIP1
5   chr14   21608628       21902613     NM_031314        HNRNPC
6   chr14   21608628       21902613     NR_002916        SNORD8
7   chr14   21608628       21902613     NR_003029        SNORD9
8   chr14   21608628       21902613     NR_038970     LINC00641
10   chr6  162827434      164359567  NM_001080378         PACRG
12   chr6  162827434      164359567     NM_006775           QKI
13   chr6  162827434      164359567     NM_013988         PARK2
14   chr6  162827434      164359567     NR_028390     PACRG-AS1
15   chr6  162827434      164359567     NR_033862  DKFZp451B082
16   chr6  162827434      164359567     NR_037593          CAHM
17   chr6  162827434      164359567     NR_110871     PACRG-AS2
19   chr6  162827434      164359567     NR_122120     PACRG-AS3
20   chr6  162827434      164359567     NR_134620  LOC102724152
21   chr9   14866500       14981454     NM_144966         FREM1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244993151      245171161  NM_001143943        EFCAB2
2    chr1  244993151      245171161  NM_001312871         COX20
4    chr1  244993151      245171161     NM_004501        HNRNPU
7    chr1  244993151      245171161     NR_111907  LOC101928068
8    chr1  244993151      245171161     NR_132782      SNORA100
9   chr14   21889067       22020884  NM_001163380         RAB2B
10  chr14   21889067       22020884  NM_001170629          CHD8
11  chr14   21889067       22020884  NM_001303523          TOX4
12  chr14   21889067       22020884     NM_019852        METTL3
15  chr14   21889067       22020884     NR_111966         SALL2
17   chr2   97223392       97351247  NM_001115016        KANSL3
18   chr2   97223392       97351247  NM_001293083        FER1L5
20  chr20   14736706       14991675     NM_080676       MACROD2
21  chr20   14736706       14991675     NR_037841   MACROD2-AS1
23  chr22   32360958       32504736     NM_000343        SLC5A1
25   chr7  110792416      110921407  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  244971947      245102917  NM_001312871      COX20
2    chr1  244971947      245102917     NM_004501     HNRNPU
4    chr1  244971947      245102917     NR_132782   SNORA100
5   chr14   21754714       21893642  NM_001170629       CHD8
6   chr14   21754714       21893642     NM_007192    SUPT16H
7   chr14   21754714       21893642     NM_020366    RPGRIP1
9   chr14   21754714       21893642     NR_002916     SNORD8
10  chr14   21754714       21893642     NR_003029     SNORD9
11  chr14   21843642       22181314  NM_001001912      OR4E2
12  chr14   21843642       22181314  NM_001005465     OR10G3
13  chr14   21843642       22181314  NM_001005466     OR10G2
14  chr14   21843642       22181314  NM_001163380      RAB2B
15  chr14   21843642       22181314  NM_001170629       CHD8
16  chr14   21843642       22181314  NM_001303523       TOX4
17  chr14   21843642       22181314  NM_001317107      OR4E1
18  chr14   21843642       22181314     NM_007192    SUPT16H
19  chr14   21843642       22181314     NM_019852     METTL3
22  chr14   21843642       22181314     NR_002916     SNORD8
23  chr14   21843642       22181314     NR_003029     SNORD9
24  chr14   21843642       22181314     NR_111966      SALL2
26  chr15   54537210       54657669  NM_001080534     UNC13C
28  chr22   20127785       20229560  NM_001243537    CCDC188
29  chr22   20127785       20229560     NM_013373     ZDHHC8
30  chr22   20127785       20229560     NM_023004      RTN4R
31  chr22   20127785       20229560     NR_026919  LINC00896
32  chr22   20127785       20229560     NR_038460  LOC284865,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68600426       68718542  NM_001127384        CTNNA3
2   chr10   68600426       68718542     NM_178011        LRRTM3
3   chr10   68600426       68718542     NR_111911  LOC101928961
4   chr11  132192024      132295341  NM_001012393         OPCML
5   chr11  132192024      132295341  NM_001048209           NTM
9    chr2   69613859       69994960     NM_001153         ANXA4
10   chr2   69613859       69994960  NM_001244710         GFPT1
12   chr2   69613859       69994960     NM_014911          AAK1
13   chr2   69613859       69994960     NM_015700          NFU1
14   chr2   69613859       69994960     NR_003705      SNORA36C
15  chr22   19035863       19146705  NM_001184781         DGCR2
16  chr22   19035863       19146705     NM_005315          GSC2
17  chr22   19035863       19146705     NM_022719        DGCR14
18  chr22   19035863       19146705     NM_053006         TSSK2
19  chr22   19035863       19146705     NR_024157        DGCR11
20   chr9   11993560       14910021     NM_000550         TYRP1
21   chr9   11993560       14910021  NM_001177704         FREM1
22   chr9   11993560       14910021  NM_001190738          NFIB
23   chr9   11993560       14910021  NM_001261407          MPDZ
26   chr9   11993560       14910021     NM_005454          CER1
29   chr9   11993560       14910021     NM_178566       ZDHHC21
30   chr9   11993560       14910021     NM_203403       LURAP1L
31   chr9   11993560       14910021     NR_033863      FLJ41200
32   chr9   11993560       14910021     NR_038194     LINC00583
33   chr9   11993560       14910021     NR_125775   LURAP1L-AS1
34   chr9   11993560       14910021     NR_132976      SNORD137,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   21822432       21942434  NM_001163380          RAB2B
1   chr14   21822432       21942434  NM_001170629           CHD8
2   chr14   21822432       21942434     NM_007192        SUPT16H
5   chr14   21822432       21942434     NR_002916         SNORD8
6   chr14   21822432       21942434     NR_003029         SNORD9
7   chr16   15160507       15309287  NM_001285449         PDXDC1
8   chr16   15160507       15309287  NM_001301064           RRN3
10  chr16   15160507       15309287     NR_037466      MIR3180-4
11  chr16   15160507       15309287     NR_106775      MIR6511B1
12  chr16   15160507       15309287     NR_106965      MIR6511B2
13  chr16   15160507       15309287     NR_123721  PKD1P6-NPIPP1
15  chr16   15160507       15309287     NR_125434   LOC100505915
16   chr4   93920906       94048993     NM_001510          GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245029510      245148596  NM_001143943        EFCAB2
3    chr1  245029510      245148596     NR_111907  LOC101928068
4   chr14   21809324       22114408  NM_001005465        OR10G3
5   chr14   21809324       22114408  NM_001005466        OR10G2
6   chr14   21809324       22114408  NM_001163380         RAB2B
7   chr14   21809324       22114408  NM_001170629          CHD8
8   chr14   21809324       22114408  NM_001303523          TOX4
9   chr14   21809324       22114408     NM_007192       SUPT16H
10  chr14   21809324       22114408     NM_019852        METTL3
11  chr14   21809324       22114408     NM_020366       RPGRIP1
14  chr14   21809324       22114408     NR_002916        SNORD8
15  chr14   21809324       22114408     NR_003029        SNORD9
16  chr14   21809324       22114408     NR_111966         SALL2
18  chr16    6316093        6441701  NM_001308117        RBFOX1
20   chr9    9534072        9667322     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142673198      144947338  NM_001002811       PDE4DIP
2    chr1  142673198      144947338  NM_001123068       PPIAL4G
3    chr1  142673198      144947338  NM_001135789       PPIAL4C
6    chr1  142673198      144947338  NM_001277444         NBPF9
7    chr1  142673198      144947338  NM_001278267        NBPF20
8    chr1  142673198      144947338  NM_001287385        FAM72C
9    chr1  142673198      144947338  NM_001345942        FAM72D
13   chr1  142673198      144947338     NR_003242        PFN1P2
14   chr1  142673198      144947338     NR_024511     LINC00623
16   chr1  142673198      144947338     NR_046228   ANKRD20A12P
17   chr1  142673198      144947338     NR_102405         NBPF8
18   chr1  142673198      144947338     NR_104014     LINC01138
19   chr1  142673198      144947338     NR_106967       MIR6077
20   chr1  142673198      144947338     NR_110761  LOC102723769
21   chr1  142673198      144947338     NR_111930  LOC100132057
22   chr1  142673198      144947338     NR_111953     LINC00869
24  chr15   85706819       86154790  NM_001310153      GOLGA6L3
25  chr15   85706819       86154790     NM_006738        AKAP13
26  chr15   85706819       86154790     NR_049748     LOC642423
27  chr15   85706819       86154790     NR_106993       MIR7706
28  chr21   23166719       23305598     NR_109958     LINC01425,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245044295      245208344  NM_001143943        EFCAB2
3    chr1  245044295      245208344     NR_111907  LOC101928068
4   chr13   63078156       63394082     NR_047029     LINC00448
7   chr14   21754433       21882750  NM_001170629          CHD8
8   chr14   21754433       21882750     NM_007192       SUPT16H
9   chr14   21754433       21882750     NM_020366       RPGRIP1
11  chr14   21754433       21882750     NR_002916        SNORD8
12  chr14   21754433       21882750     NR_003029        SNORD9
13  chr17   21610004       22535229  NM_001190452      MTRNR2L1
14  chr17   21610004       22535229     NR_027084      FLJ36000
15  chr17   21610004       22535229     NR_028336       FAM27E5
16   chr3     854652         980850     NR_110118     LINC01266
17   chr5  104077831      105609964     NR_000039       RAB9BP1
18   chr6  162818874      162948503     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187206138      187512265     NR_126347     LINC01036
1    chr1  187206138      187512265     NR_132374     LINC01037
2   chr11    4157683        4276912     NM_001033          RRM1
4   chr11    4157683        4276912     NR_047550  LOC100506082
5   chr22   17186467       17704877  NM_001037814          GAB4
6   chr22   17186467       17704877  NM_001163079         CECR6
7   chr22   17186467       17704877  NM_001282227         CECR1
9   chr22   17186467       17704877  NM_001289905        IL17RA
10  chr22   17186467       17704877     NM_017829         CECR5
13  chr22   17186467       17704877     NM_175878          XKR3
15  chr22   17186467       17704877     NR_003607       HSFY1P1
16  chr22   17186467       17704877     NR_015352         CECR7
17  chr22   17186467       17704877     NR_024482     CECR5-AS1
18  chr22   17186467       17704877     NR_103793  LOC100996342
19  chr22   17186467       17704877     NR_134584  LOC101929350
20   chr4   71356986       71596048  NM_001037442         RUFY3
22   chr4   71356986       71596048  NM_001286731          AMTN
24   chr4   71356986       71596048     NM_016519          AMBN
25   chr4   71356986       71596048     NM_020368          UTP3
26   chr4   71356986       71596048     NM_031889          ENAM
27   chr4   71356986       71596048     NM_144646        JCHAIN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21796623       22018247  NM_001163380         RAB2B
1   chr14   21796623       22018247  NM_001170629          CHD8
2   chr14   21796623       22018247  NM_001303523          TOX4
3   chr14   21796623       22018247     NM_007192       SUPT16H
4   chr14   21796623       22018247     NM_019852        METTL3
5   chr14   21796623       22018247     NM_020366       RPGRIP1
8   chr14   21796623       22018247     NR_002916        SNORD8
9   chr14   21796623       22018247     NR_003029        SNORD9
10  chr14   21796623       22018247     NR_111966         SALL2
12  chr15   28214765       28433171     NM_000275          OCA2
14  chr15   28214765       28433171     NM_004667         HERC2
15   chr2  108812492      108938261  NM_001008743       SULT1C3
16   chr2  108812492      108938261     NM_001056       SULT1C2
18   chr2  108812492      108938261     NR_131251     LINC01594
19  chr21   23131887       23244171     NR_109958     LINC01425
20   chr9   44296495       44426154     NR_121564  LOC101927827
21   chr9   44296495       44426154     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   88970194       89635115  NM_001099338        NUTM2A
1   chr10   88970194       89635115  NM_001126049          KLLN
2   chr10   88970194       89635115  NM_001178118        MINPP1
3   chr10   88970194       89635115  NM_001304718          PTEN
4   chr10   88970194       89635115  NM_001321968         ATAD1
5   chr10   88970194       89635115     NM_004670        PAPSS2
7   chr10   88970194       89635115     NR_024397    NUTM2A-AS1
8   chr10   88970194       89635115     NR_028492        CFL1P1
9   chr10   88970194       89635115     NR_029408     LINC00863
10  chr10   88970194       89635115     NR_039825       MIR4678
11  chr10   88970194       89635115     NR_046091     LINC00864
12  chr10   88970194       89635115     NR_075100        NUTM2D
14  chr16   21482027       23328421     NM_000336        SCNN1B
15  chr16   21482027       23328421     NM_001039        SCNN1G
16  chr16   21482027       23328421  NM_001077180        METTL9
17  chr16   21482027       23328421  NM_001135865        NPIPB5
18  chr16   21482027       23328421  NM_001161683          OTOA
19  chr16   21482027       23328421  NM_001164579      C16orf52
20  chr16   21482027       23328421  NM_001258033        POLR3E
22  chr16   21482027       23328421  NM_001310148        NPIPB4
23  chr16   21482027       23328421     NM_001802          CDR2
24  chr16   21482027       23328421     NM_003366        UQCRC2
25  chr16   21482027       23328421     NM_005849         IGSF6
26  chr16   21482027       23328421     NM_006043        HS3ST2
27  chr16   21482027       23328421     NM_013302         EEF2K
28  chr16   21482027       23328421     NM_020718         USP31
31  chr16   21482027       23328421     NM_173615         VWA3A
32  chr16   21482027       23328421     NM_173806         PDZD9
33  chr16   21482027       23328421     NR_002594      SLC7A5P2
34  chr16   21482027       23328421     NR_003370        RRN3P1
35  chr16   21482027       23328421     NR_003676     LOC653786
36  chr16   21482027       23328421     NR_027154        SMG1P1
37  chr16   21482027       23328421     NR_027155        SMG1P3
38  chr16   21482027       23328421     NR_027460        RRN3P3
39  chr16   21482027       23328421     NR_049833     MIR3680-2
40  chr16   21482027       23328421     NR_110930  LOC101927814
41  chr16   21482027       23328421     NR_136333       MFSD13B
42  chr17   70920411       71065840     NM_139177      SLC39A11
43  chr19   21629983       21759423  NM_001001415        ZNF429
44  chr19   21629983       21759423     NR_037194     LINC00664
45  chr20   21945927       22289978     NR_038394     LINC01432
46  chr20   21945927       22289978     NR_110615     LINC01427
47  chr21   40080713       40331701  NM_001256295          ETS2
49  chr21   40080713       40331701     NR_027065     LINC00114
52  chr21   40080713       40331701     NR_109926  LOC101928398
53  chr21   40080713       40331701     NR_120405     LOC400867
54   chr5   17459224       17701077     NR_134270  LOC102723526
55   chr8   15234766       15669389     NM_006765         TUSC3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28507488       30045849  NM_001130414         APBA2
1   chr15   28507488       30045849  NM_001282468       GOLGA8M
2   chr15   28507488       30045849  NM_001301025          TJP1
5   chr15   28507488       30045849     NM_004667         HERC2
6   chr15   28507488       30045849     NM_015307      FAM189A1
7   chr15   28507488       30045849     NM_138704        NSMCE3
8   chr15   28507488       30045849     NR_026589       WHAMMP2
9   chr15   28507488       30045849     NR_033351       GOLGA8F
11  chr15   28507488       30045849     NR_033353       GOLGA8G
13  chr15   28507488       30045849     NR_036443       HERC2P9
14  chr15   28507488       30045849     NR_036475  LOC100289656
15  chr15   28507488       30045849     NR_037599     PDCD6IPP2
16  chr15   28507488       30045849     NR_039734     MIR4509-3
18  chr15   28507488       30045849     NR_047567     GOLGA6L7P
19  chr15   28507488       30045849     NR_135221  LOC100130111
20  chr16   21766131       21958618  NM_001161683          OTOA
21  chr16   21766131       21958618  NM_001310148        NPIPB4
24  chr16   21766131       21958618     NR_003370        RRN3P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143547402      144895715  NM_001002811       PDE4DIP
2    chr1  143547402      144895715  NM_001123068       PPIAL4G
3    chr1  143547402      144895715  NM_001135789       PPIAL4C
6    chr1  143547402      144895715  NM_001277444         NBPF9
7    chr1  143547402      144895715  NM_001278267        NBPF20
8    chr1  143547402      144895715  NM_001287385        FAM72C
9    chr1  143547402      144895715  NM_001345942        FAM72D
13   chr1  143547402      144895715     NR_003242        PFN1P2
14   chr1  143547402      144895715     NR_024511     LINC00623
16   chr1  143547402      144895715     NR_102405         NBPF8
17   chr1  143547402      144895715     NR_104014     LINC01138
18   chr1  143547402      144895715     NR_106967       MIR6077
19   chr1  143547402      144895715     NR_111930  LOC100132057
20   chr1  143547402      144895715     NR_111953     LINC00869
22  chr10   54212363       54346196     NR_120641     LINC01468
24  chr20   23325685       23492044  NM_001283018          NAPB
25  chr20   23325685       23492044  NM_001317019          GZF1
26  chr20   23325685       23492044     NM_005492          CST8
27  chr20   23325685       23492044     NM_013248          NXT1
29  chr20   23325685       23492044     NM_080830         CST11
30  chr20   23325685       23492044     NM_138283         CSTL1
31  chr20   23325685       23492044     NR_109884     LINC01431
32   chr9   28206907       28926064  NM_001258282        LINGO2
34   chr9   28206907       28926064     NR_030597        MIR876
35   chr9   28206907       28926064     NR_030618        MIR873,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   29549207       29673092     NR_049833  MIR3680-2
1  chr16   29549207       29673092     NR_135305     SMG1P2
3  chr22   16971545       17120620     NM_014406     CCT8L2
4  chr22   16971545       17120620     NR_001591     TPTEP1
5   chr5   59612017       59755426  NM_001165899      PDE4D,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   86734622       88127931  NM_001168724       TMEM135
1   chr11   86734622       88127931     NM_001814          CTSC
2   chr11   86734622       88127931     NM_022337         RAB38
4   chr11   86734622       88127931     NR_036124       MIR3166
5   chr11   86734622       88127931     NR_135090  LOC105369423
6   chr14   21878976       22040777  NM_001005465        OR10G3
7   chr14   21878976       22040777  NM_001163380         RAB2B
8   chr14   21878976       22040777  NM_001170629          CHD8
9   chr14   21878976       22040777  NM_001303523          TOX4
10  chr14   21878976       22040777     NM_019852        METTL3
13  chr14   21878976       22040777     NR_111966         SALL2
15   chr9   39085822       39627083  NM_001085452     SPATA31A1
16   chr9   39085822       39627083     NM_033655       CNTNAP3
17   chr9   39085822       39627083     NR_003528       ZNF658B
18   chr9   39085822       39627083     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   86084228       86349635     NM_017953        ZNHIT6
1    chr1   86084228       86349635     NM_152890       COL24A1
2   chr11     707540         881187     NM_001004         RPLP2
3   chr11     707540         881187  NM_001025234        TSPAN4
6   chr11     707540         881187  NM_001039490         CD151
7   chr11     707540         881187  NM_001142675         CHID1
8   chr11     707540         881187  NM_001191060      SLC25A22
10  chr11     707540         881187  NM_001286606       CRACR2B
11  chr11     707540         881187  NM_001293167         PANO1
12  chr11     707540         881187  NM_001318824         PDDC1
14  chr11     707540         881187     NM_006755        TALDO1
15  chr11     707540         881187     NM_016564         CEND1
16  chr11     707540         881187     NM_020376        PNPLA2
17  chr11     707540         881187     NM_021128        POLR2L
18  chr11     707540         881187     NM_022772        EPS8L2
21  chr11     707540         881187     NM_145886         PIDD1
22  chr11     707540         881187     NR_002585       SNORA52
23  chr11     707540         881187     NR_126342     LOC171391
24  chr12   27152215       27298090  NM_001080406      C12orf71
25  chr12   27152215       27298090  NM_001271811         MED21
26  chr12   27152215       27298090     NM_016551        TM7SF3
27  chr22   17158251       17410484     NM_175878          XKR3
28  chr22   17158251       17410484     NR_003607       HSFY1P1
29  chr22   17158251       17410484     NR_134584  LOC101929350,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   28136524       28345448  NM_000275      OCA2
2   chr2  133724404      133835032  NM_207363    NCKAP5
3  chr20   40994321       41124952  NM_133170     PTPRT,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21782568       22014197  NM_001163380      RAB2B
1   chr14   21782568       22014197  NM_001170629       CHD8
2   chr14   21782568       22014197  NM_001303523       TOX4
3   chr14   21782568       22014197     NM_007192    SUPT16H
4   chr14   21782568       22014197     NM_019852     METTL3
5   chr14   21782568       22014197     NM_020366    RPGRIP1
8   chr14   21782568       22014197     NR_002916     SNORD8
9   chr14   21782568       22014197     NR_003029     SNORD9
10  chr14   21782568       22014197     NR_111966      SALL2
12  chr15   52760061       52899107  NM_001142495      MYO5A
13  chr15   52760061       52899107  NM_001286495    FAM214A
14  chr15   52760061       52899107  NM_001306191     ARPP19
19  chr16   76826201       76958207     NR_039870    MIR4719
20  chr19   57483021       57643391     NM_020903      USP29
21   chr4  128791742      128935780  NM_001190801       PLK4
22   chr4  128791742      128935780  NM_001319305     ABHD18
24   chr4  128791742      128935780     NM_152778      MFSD8
25   chr6   20946141       21546344     NM_017774     CDKAL1
26   chr6   20946141       21546344     NR_103790  LINC00581,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145277083      145589419  NM_001012758        NUDT17
1    chr1  145277083      145589419  NM_001039888      ANKRD34A
2    chr1  145277083      145589419  NM_001184795        PEX11B
3    chr1  145277083      145589419  NM_001277444         NBPF9
4    chr1  145277083      145589419  NM_001278267        NBPF20
5    chr1  145277083      145589419  NM_001280799       ANKRD35
6    chr1  145277083      145589419  NM_001302371        NBPF10
7    chr1  145277083      145589419  NM_001303040        ITGA10
8    chr1  145277083      145589419  NM_001313972         TXNIP
10   chr1  145277083      145589419     NM_005105         RBM8A
11   chr1  145277083      145589419     NM_006099         PIAS3
13   chr1  145277083      145589419     NM_032305       POLR3GL
14   chr1  145277083      145589419     NM_145277          HFE2
15   chr1  145277083      145589419     NM_153713         LIX1L
16   chr1  145277083      145589419     NM_203458      NOTCH2NL
17   chr1  145277083      145589419     NR_002328        GNRHR2
21   chr1  145277083      145589419     NR_104217       NBPF25P
22   chr1  145277083      145589419     NR_106794       MIR6736
23   chr1  145277083      145589419     NR_125967  LOC101928979
24  chr12   16252337       16458489  NM_001170798       SLC15A5
25  chr16   16449229       16632890  NM_001282511        NPIPA8
26  chr16   16449229       16632890     NR_106971     MIR6511A4
27   chr5   17419688       17679908     NR_134270  LOC102723526
29   chr5   17419688       17679908     NR_134273  LOC101929544
32   chr6   94310935       94742324     NR_015362          TSG1
33   chr7  111209387      111444354     NM_014705         DOCK4,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21736621       21979021  NM_001163380     RAB2B
1   chr14   21736621       21979021  NM_001170629      CHD8
2   chr14   21736621       21979021  NM_001303523      TOX4
3   chr14   21736621       21979021     NM_007192   SUPT16H
4   chr14   21736621       21979021     NM_019852    METTL3
5   chr14   21736621       21979021     NM_020366   RPGRIP1
7   chr14   21736621       21979021     NM_031314    HNRNPC
9   chr14   21736621       21979021     NR_002916    SNORD8
10  chr14   21736621       21979021     NR_003029    SNORD9
11  chr15   52787986       54385994  NM_001080534    UNC13C
12  chr15   52787986       54385994  NM_001142495     MYO5A
13  chr15   52787986       54385994  NM_001286495   FAM214A
14  chr15   52787986       54385994  NM_001306191    ARPP19
19  chr15   52787986       54385994     NM_004498   ONECUT1
21  chr15   52787986       54385994     NM_182758     WDR72
26  chr16   12291796       12436370     NM_032167     SNX29,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12843105       13050029  NM_001009611       PRAMEF4
1    chr1   12843105       13050029  NM_001010889       PRAMEF6
2    chr1   12843105       13050029  NM_001010890       PRAMEF9
3    chr1   12843105       13050029  NM_001012276       PRAMEF8
4    chr1   12843105       13050029  NM_001013631      HNRNPCL1
5    chr1   12843105       13050029  NM_001099850      PRAMEF18
6    chr1   12843105       13050029  NM_001100631      PRAMEF22
7    chr1   12843105       13050029  NM_001146181      HNRNPCL3
8    chr1   12843105       13050029  NM_001146344      PRAMEF11
9    chr1   12843105       13050029  NM_001294139       PRAMEF1
10   chr1   12843105       13050029  NM_001302551      HNRNPCL4
12   chr1   12843105       13050029     NM_023014       PRAMEF2
13  chr12    5113708        5225733     NM_002234         KCNA5
14  chr14   21890438       22360115  NM_001001912         OR4E2
15  chr14   21890438       22360115  NM_001005465        OR10G3
16  chr14   21890438       22360115  NM_001005466        OR10G2
17  chr14   21890438       22360115  NM_001163380         RAB2B
18  chr14   21890438       22360115  NM_001170629          CHD8
19  chr14   21890438       22360115  NM_001303523          TOX4
20  chr14   21890438       22360115  NM_001317107         OR4E1
21  chr14   21890438       22360115     NM_019852        METTL3
24  chr14   21890438       22360115     NR_111966         SALL2
26   chr3  146632225      146875253     NR_135560  LOC101927866
27   chr4   69298628       69400243     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82441160       82607297  NM_001297704        ADGRL2
2    chr1  143666952      143832683  NM_001123068       PPIAL4G
3    chr1  143666952      143832683     NR_104014     LINC01138
4    chr1  143666952      143832683     NR_106967       MIR6077
5    chr1  143666952      143832683     NR_111930  LOC100132057
6    chr1  241692838      241809431     NM_001821          CHML
7    chr1  241692838      241809431     NM_003679           KMO
8    chr1  241692838      241809431     NM_014322          OPN3
9   chr20   14809415       15044475     NM_080676       MACROD2
10  chr20   14809415       15044475     NR_037841   MACROD2-AS1
12   chr7    9330912       10094502     NR_002790          PER4,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   81453269       81559513  NM_001278495       NUTM2B
1   chr10   81453269       81559513     NR_120611   NUTM2B-AS1
4   chr12   72559861       72663042     NR_026836    TRHDE-AS1
6   chr16   61739737       61878665     NM_001796         CDH8
7   chr17   14110079       14351097  NM_001007530       CDRT15
8   chr17   14110079       14351097     NM_001303        COX10
9   chr17   14110079       14351097     NM_006041     HS3ST3B1
10  chr17   14110079       14351097     NR_026880     MGC12916
11  chr20   14783534       15222646  NM_001033087      MACROD2
13  chr20   14783534       15222646     NR_037841  MACROD2-AS1
15   chr7   64119839       64578793  NM_001007253       ERV3-1
16   chr7   64119839       64578793  NM_001160183       ZNF138
17   chr7   64119839       64578793  NM_001282360       ZNF107
18   chr7   64119839       64578793     NM_015852       ZNF117
19   chr7   64119839       64578793     NM_021148       ZNF273
20   chr7   64119839       64578793     NR_033416       CCT6P3
23   chr7   64119839       64578793     NR_106898      MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   24347443       24629662     NR_026647         PWRN2
1   chr16   18313871       18575297  NM_001004060         NOMO2
2   chr16   18313871       18575297  NM_001282511        NPIPA8
3   chr16   18313871       18575297     NR_036140     MIR3179-1
4   chr16   18313871       18575297     NR_036142     MIR3180-2
5   chr16   18313871       18575297     NR_036144     MIR3180-3
6   chr16   18313871       18575297     NR_037442     MIR3670-1
7   chr16   18313871       18575297     NR_103772  LOC100288162
8   chr16   18313871       18575297     NR_106971     MIR6511A4
9   chr16   18313871       18575297     NR_107060     MIR6770-2
10  chr20   14834078       14943741     NM_080676       MACROD2
11  chr20   14834078       14943741     NR_037841   MACROD2-AS1
13   chr4    9010471        9232684  NM_001256852      USP17L10
14   chr4    9010471        9232684  NM_001256853      USP17L12
15   chr4    9010471        9232684  NM_001256854      USP17L11
16   chr4    9010471        9232684  NM_001256855      USP17L13
17   chr6  162365204      162740545     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr11    1130891        1322321  NM_001304359             MUC5AC
1   chr11    1130891        1322321  NM_001318512             TOLLIP
3   chr11    1130891        1322321     NM_002458              MUC5B
4   chr11    1130891        1322321     NR_106802            MIR6744
5   chr14   21758103       21883839  NM_001170629               CHD8
6   chr14   21758103       21883839     NM_007192            SUPT16H
7   chr14   21758103       21883839     NM_020366            RPGRIP1
9   chr14   21758103       21883839     NR_002916             SNORD8
10  chr14   21758103       21883839     NR_003029             SNORD9
11  chr16    8624067        8732454     NM_024109            METTL22
12  chr22   17065554       17182556     NM_014406             CCT8L2
13  chr22   17065554       17182556     NR_001591             TPTEP1
14  chr22   17065554       17182556     NR_040115  ANKRD62P1-PARP4P3
15   chr3  145817065      146006950     NM_000935              PLOD2
16   chr3  145817065      146006950  NM_001128304             PLSCR4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143060193      144028641  NM_001123068       PPIAL4G
1    chr1  143060193      144028641  NM_001287385        FAM72C
2    chr1  143060193      144028641  NM_001345942        FAM72D
6    chr1  143060193      144028641     NR_104014     LINC01138
7    chr1  143060193      144028641     NR_106967       MIR6077
8    chr1  143060193      144028641     NR_110761  LOC102723769
9    chr1  143060193      144028641     NR_111930  LOC100132057
11  chr22   17256059       17961773  NM_001037814          GAB4
12  chr22   17256059       17961773  NM_001163079         CECR6
13  chr22   17256059       17961773  NM_001282227         CECR1
15  chr22   17256059       17961773  NM_001289905        IL17RA
16  chr22   17256059       17961773  NM_001290046         CECR2
18  chr22   17256059       17961773     NM_017829         CECR5
21  chr22   17256059       17961773     NM_175878          XKR3
23  chr22   17256059       17961773     NR_003607       HSFY1P1
24  chr22   17256059       17961773     NR_015352         CECR7
25  chr22   17256059       17961773     NR_024482     CECR5-AS1
26  chr22   17256059       17961773     NR_038398         CECR3
27  chr22   17256059       17961773     NR_103793  LOC100996342
28   chr4     500411         623340     NM_000283         PDE6B
29   chr4     500411         623340  NM_001289053          PIGG
32   chr6  162320734      162542874     NM_013988         PARK2
33   chr9  108468497      108736320     NM_018112       TMEM38B,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   47758697       47877587  NM_001113498          MDGA2
3   chr16   14738444       15201931  NM_001270767          NTAN1
4   chr16   14738444       15201931  NM_001277323         NPIPA3
6   chr16   14738444       15201931  NM_001277324         NPIPA2
8   chr16   14738444       15201931  NM_001285445         PDXDC1
13  chr16   14738444       15201931  NM_001301064           RRN3
15  chr16   14738444       15201931     NM_006985         NPIPA1
16  chr16   14738444       15201931     NM_014287          NOMO1
17  chr16   14738444       15201931     NM_016561           BFAR
18  chr16   14738444       15201931     NR_023387        ABCC6P2
19  chr16   14738444       15201931     NR_036140      MIR3179-1
20  chr16   14738444       15201931     NR_036141      MIR3180-1
21  chr16   14738444       15201931     NR_036142      MIR3180-2
22  chr16   14738444       15201931     NR_103772   LOC100288162
23  chr16   14738444       15201931     NR_106970      MIR6511A3
24  chr16   14738444       15201931     NR_107060      MIR6770-2
25  chr16   14738444       15201931     NR_123721  PKD1P6-NPIPP1
27  chr16   14738444       15201931     NR_125434   LOC100505915
28  chr16   14738444       15201931     NR_128713      MIR3670-4
29  chr16   14738444       15201931     NR_133651        PLA2G10
30   chr4   69176976       69293070  NM_001031732         YTHDC1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21809975       23335674  NM_001001912      OR4E2
1   chr14   21809975       23335674  NM_001005465     OR10G3
2   chr14   21809975       23335674  NM_001005466     OR10G2
3   chr14   21809975       23335674  NM_001126105     SLC7A7
5   chr14   21809975       23335674  NM_001163380      RAB2B
6   chr14   21809975       23335674  NM_001170629       CHD8
7   chr14   21809975       23335674  NM_001303523       TOX4
8   chr14   21809975       23335674  NM_001317107      OR4E1
9   chr14   21809975       23335674  NM_001318870     MRPL52
10  chr14   21809975       23335674     NM_001344       DAD1
11  chr14   21809975       23335674     NM_004995      MMP14
12  chr14   21809975       23335674     NM_005015      OXA1L
13  chr14   21809975       23335674     NM_007192    SUPT16H
14  chr14   21809975       23335674     NM_019852     METTL3
15  chr14   21809975       23335674     NM_020366    RPGRIP1
17  chr14   21809975       23335674     NM_022060      ABHD4
19  chr14   21809975       23335674     NR_002916     SNORD8
20  chr14   21809975       23335674     NR_003029     SNORD9
22  chr14   21809975       23335674     NR_111966      SALL2
24  chr16   29530649       29656811     NR_049833  MIR3680-2
25  chr16   29530649       29656811     NR_135305     SMG1P2
27   chr7    4138166        4354054  NM_001079653       SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16417449       16554874  NM_001282511        NPIPA8
1   chr16   16417449       16554874     NR_036447        PKD1P1
2   chr16   16417449       16554874     NR_103772  LOC100288162
3   chr16   16417449       16554874     NR_106766     MIR6511A1
4   chr16   16417449       16554874     NR_106971     MIR6511A4
5   chr16   16417449       16554874     NR_107060     MIR6770-2
6   chr21   44846390       45026532  NM_001320643  LOC102724428
7   chr21   44846390       45026532     NM_007031        HSF2BP
8   chr21   44846390       45026532     NM_173354          SIK1
9   chr21   44846390       45026532     NR_026863     LINC00313
10  chr21   44846390       45026532     NR_026960     LINC00319
11  chr21   44846390       45026532     NR_136540  LOC102724354,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr14   21773987       21922767  NM_001170629            CHD8
1   chr14   21773987       21922767     NM_007192         SUPT16H
2   chr14   21773987       21922767     NM_020366         RPGRIP1
4   chr14   21773987       21922767     NR_002916          SNORD8
5   chr14   21773987       21922767     NR_003029          SNORD9
6   chr15   43987467       44267342  NM_001018108           SERF2
7   chr15   43987467       44267342  NM_001167941           WDR76
11  chr15   43987467       44267342  NM_001199885            HYPK
12  chr15   43987467       44267342  NM_001258031         SERINC4
13  chr15   43987467       44267342  NM_001286490           FRMD5
15  chr15   43987467       44267342  NM_001321927          CKMT1A
18  chr15   43987467       44267342     NM_005313           PDIA3
19  chr15   43987467       44267342     NM_005926           MFAP1
20  chr15   43987467       44267342     NM_025165            ELL3
21  chr15   43987467       44267342     NR_002318      CATSPER2P1
22  chr15   43987467       44267342     NR_003571          PIN4P1
23  chr15   43987467       44267342     NR_031695         MIR1282
24  chr15   43987467       44267342     NR_037673  SERF2-C15ORF63
26  chr20   14869479       14977878     NM_080676         MACROD2
27  chr20   14869479       14977878     NR_037841     MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21731682       22327149  NM_001001912      OR4E2
1   chr14   21731682       22327149  NM_001005465     OR10G3
2   chr14   21731682       22327149  NM_001005466     OR10G2
3   chr14   21731682       22327149  NM_001163380      RAB2B
4   chr14   21731682       22327149  NM_001170629       CHD8
5   chr14   21731682       22327149  NM_001303523       TOX4
6   chr14   21731682       22327149  NM_001317107      OR4E1
7   chr14   21731682       22327149     NM_007192    SUPT16H
8   chr14   21731682       22327149     NM_019852     METTL3
9   chr14   21731682       22327149     NM_020366    RPGRIP1
11  chr14   21731682       22327149     NM_031314     HNRNPC
13  chr14   21731682       22327149     NR_002916     SNORD8
14  chr14   21731682       22327149     NR_003029     SNORD9
15  chr14   21731682       22327149     NR_111966      SALL2
17   chr4   69267060       69503977     NM_001077    UGT2B17
18   chr4   69267060       69503977     NM_014058  TMPRSS11E
19   chr9     149068         399656  NM_001145355      CBWD1
20   chr9     149068         399656  NM_001190458      DOCK8
21   chr9     149068         399656     NM_152569    C9orf66,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr20   14706288       15245182  NM_001033087            MACROD2
2   chr20   14706288       15245182     NR_037841        MACROD2-AS1
4   chr22   17113999       18074582  NM_001037814               GAB4
5   chr22   17113999       18074582  NM_001163079              CECR6
6   chr22   17113999       18074582  NM_001282227              CECR1
8   chr22   17113999       18074582  NM_001288707       LOC101929372
9   chr22   17113999       18074582  NM_001289905             IL17RA
10  chr22   17113999       18074582  NM_001290046              CECR2
12  chr22   17113999       18074582  NM_001303484           SLC25A18
13  chr22   17113999       18074582     NM_017829              CECR5
16  chr22   17113999       18074582     NM_175878               XKR3
18  chr22   17113999       18074582     NR_001591             TPTEP1
19  chr22   17113999       18074582     NR_003607            HSFY1P1
20  chr22   17113999       18074582     NR_015352              CECR7
21  chr22   17113999       18074582     NR_024482          CECR5-AS1
22  chr22   17113999       18074582     NR_038398              CECR3
23  chr22   17113999       18074582     NR_040115  ANKRD62P1-PARP4P3
24  chr22   17113999       18074582     NR_103793       LOC100996342
25  chr22   17113999       18074582     NR_134584       LOC101929350
26   chr7   64220680       65077315  NM_001007253             ERV3-1
27   chr7   64220680       65077315  NM_001160183             ZNF138
28   chr7   64220680       65077315  NM_001287532              ZNF92
29   chr7   64220680       65077315     NM_015852             ZNF117
30   chr7   64220680       65077315     NM_021148             ZNF273
31   chr7   64220680       65077315     NR_033416             CCT6P3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   68126933       68270935  NM_001127384     CTNNA3
2   chr14   21939383       22041049  NM_001005465     OR10G3
3   chr14   21939383       22041049  NM_001163380      RAB2B
4   chr14   21939383       22041049  NM_001303523       TOX4
5   chr14   21939383       22041049     NM_019852     METTL3
7   chr14   21939383       22041049     NR_111966      SALL2
9   chr16   21663069       21766618  NM_001077180     METTL9
10  chr16   21663069       21766618  NM_001161683       OTOA
12  chr16   21663069       21766618     NM_005849      IGSF6
15  chr16   29531846       29640022     NR_049833  MIR3680-2
16  chr16   29531846       29640022     NR_135305     SMG1P2
18  chr18    1696611        3254297  NM_001303047     MYL12A
21  chr18    1696611        3254297  NM_001308401     METTL4
22  chr18    1696611        3254297     NM_003803      MYOM1
23  chr18    1696611        3254297     NM_006101      NDC80
24  chr18    1696611        3254297     NM_014646      LPIN2
25  chr18    1696611        3254297     NM_015295     SMCHD1
26  chr18    1696611        3254297     NM_032048    EMILIN2
27  chr18    1696611        3254297     NR_026659  LOC727896
28  chr18    1696611        3254297     NR_033754     CBX3P2
29  chr18   24661530       24909193  NM_001256316      CHST9
30   chr3    1131443        1381770  NM_001289081      CNTN6
31   chr3   85428146       85780261  NM_001167675      CADM2
34   chr3   85428146       85780261     NR_049870    MIR5688,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143534941      143748341     NR_104014     LINC01138
1    chr1  143534941      143748341     NR_106967       MIR6077
2    chr1  143534941      143748341     NR_111930  LOC100132057
3    chr2  184520414      185838213     NM_194250       ZNF804A
4    chr2  184520414      185838213     NR_039638     MIR548AE1
5   chr20   14690890       14903066     NM_080676       MACROD2
6   chr20   14690890       14903066     NR_037841   MACROD2-AS1
8   chr22   19925210       20381215     NM_000754          COMT
11  chr22   19925210       20381215  NM_001190326         DGCR8
12  chr22   19925210       20381215  NM_001242313      TMEM191B
13  chr22   19925210       20381215  NM_001243537       CCDC188
14  chr22   19925210       20381215  NM_001278639        RANBP1
17  chr22   19925210       20381215  NM_001282512        TXNRD2
18  chr22   19925210       20381215  NM_001283116        TANGO2
21  chr22   19925210       20381215     NM_001670         ARVCF
24  chr22   19925210       20381215     NM_013373        ZDHHC8
25  chr22   19925210       20381215     NM_022727        TRMT2A
26  chr22   19925210       20381215     NM_023004         RTN4R
27  chr22   19925210       20381215     NM_033257        DGCR6L
28  chr22   19925210       20381215     NR_026919     LINC00896
29  chr22   19925210       20381215     NR_029706        MIR185
30  chr22   19925210       20381215     NR_031618       MIR1286
31  chr22   19925210       20381215     NR_031706       MIR1306
32  chr22   19925210       20381215     NR_037412       MIR3618
33  chr22   19925210       20381215     NR_038460     LOC284865
34  chr22   19925210       20381215     NR_039918       MIR4761
35  chr22   19925210       20381215     NR_106874       MIR6816
36  chr22   19925210       20381215     NR_136560       FAM230A
37  chr22   19925210       20381215     NR_136572  LOC101927859
38   chr3    2328497        2443661  NM_001206955         CNTN4
40   chr6   22011808       22179259     NR_015410        CASC15
41   chr6   22011808       22179259     NR_034143         NBAT1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  132148389      132280921  NM_001048209           NTM
3   chr11  132148389      132280921     NR_046820        NTM-IT
4   chr13   80875012       80999735  NM_001318536         SPRY2
7   chr16   16296240       16510150  NM_001004067         NOMO3
8   chr16   16296240       16510150  NM_001079528         ABCC6
10  chr16   16296240       16510150  NM_001282511        NPIPA8
11  chr16   16296240       16510150     NR_036140     MIR3179-1
12  chr16   16296240       16510150     NR_036141     MIR3180-1
13  chr16   16296240       16510150     NR_036142     MIR3180-2
14  chr16   16296240       16510150     NR_036447        PKD1P1
15  chr16   16296240       16510150     NR_103772  LOC100288162
16  chr16   16296240       16510150     NR_106766     MIR6511A1
17  chr16   16296240       16510150     NR_106971     MIR6511A4
18  chr16   16296240       16510150     NR_107060     MIR6770-2
19  chr16   16296240       16510150     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21829248       22804614  NM_001001912      OR4E2
1   chr14   21829248       22804614  NM_001005465     OR10G3
2   chr14   21829248       22804614  NM_001005466     OR10G2
3   chr14   21829248       22804614  NM_001163380      RAB2B
4   chr14   21829248       22804614  NM_001170629       CHD8
5   chr14   21829248       22804614  NM_001303523       TOX4
6   chr14   21829248       22804614  NM_001317107      OR4E1
7   chr14   21829248       22804614     NM_007192    SUPT16H
8   chr14   21829248       22804614     NM_019852     METTL3
11  chr14   21829248       22804614     NR_002916     SNORD8
12  chr14   21829248       22804614     NR_003029     SNORD9
13  chr14   21829248       22804614     NR_111966      SALL2
15   chr2  132002511      132162120  NM_001077637     WTH3DI
16   chr2  132002511      132162120  NM_001083538      POTEE
17   chr2  132002511      132162120     NR_030728  LOC440910
18   chr2  132002511      132162120     NR_036499  LINC01120
19   chr5  119973097      120188985  NM_001300783      PRR16,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142703197      142856908     NR_046228   ANKRD20A12P
1   chr10   81449718       81579477  NM_001278495        NUTM2B
2   chr10   81449718       81579477     NR_120611    NUTM2B-AS1
5    chr2  186596557      186747243     NM_173651         FSIP2
6    chr2  186596557      186747243     NR_110214  LOC101927196
9    chr2  186596557      186747243     NR_144453     FSIP2-AS1
11   chr3  162865690      162983763     NR_033945     LINC01192,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21811757       21952806  NM_001163380      RAB2B
1   chr14   21811757       21952806  NM_001170629       CHD8
2   chr14   21811757       21952806  NM_001303523       TOX4
3   chr14   21811757       21952806     NM_007192    SUPT16H
4   chr14   21811757       21952806     NM_020366    RPGRIP1
7   chr14   21811757       21952806     NR_002916     SNORD8
8   chr14   21811757       21952806     NR_003029     SNORD9
9    chr2    1079659        1590872     NM_018968      SNTG2
10   chr2    1079659        1590872     NM_175719        TPO
12   chr2  108774798      109015816  NM_001008743    SULT1C3
13   chr2  108774798      109015816     NM_001056    SULT1C2
15   chr2  108774798      109015816     NM_006588    SULT1C4
16   chr2  108774798      109015816     NR_037191  SULT1C2P1
17   chr2  108774798      109015816     NR_131251  LINC01594
18   chr6  129260863      129766217  NM_001079823      LAMA2
19   chr6  140863123      141177132     NR_039675    MIR4465,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37368310       38526751  NM_001190489      MTRNR2L7
1   chr10   37368310       38526751  NM_001267597        ZNF248
4   chr10   37368310       38526751  NM_001324177        ZNF33A
5   chr10   37368310       38526751  NM_001324246        ZNF37A
9   chr10   37368310       38526751     NM_052997      ANKRD30A
10  chr10   37368310       38526751     NM_145011         ZNF25
11  chr10   37368310       38526751     NR_024524  LOC100129055
12  chr10   37368310       38526751     NR_051997      ZNF33BP1
13  chr10   37368310       38526751     NR_104061     LINC00993
16  chr10   68028812       68147061  NM_001127384        CTNNA3
18  chr15   28275938       29701204     NM_000275          OCA2
19  chr15   28275938       29701204  NM_001130414         APBA2
20  chr15   28275938       29701204  NM_001282468       GOLGA8M
22  chr15   28275938       29701204     NM_004667         HERC2
23  chr15   28275938       29701204     NM_015307      FAM189A1
24  chr15   28275938       29701204     NM_138704        NSMCE3
25  chr15   28275938       29701204     NR_026589       WHAMMP2
26  chr15   28275938       29701204     NR_033351       GOLGA8F
28  chr15   28275938       29701204     NR_033353       GOLGA8G
30  chr15   28275938       29701204     NR_036443       HERC2P9
31  chr15   28275938       29701204     NR_036475  LOC100289656
32  chr15   28275938       29701204     NR_037599     PDCD6IPP2
33  chr15   28275938       29701204     NR_039734     MIR4509-3
35  chr15   28275938       29701204     NR_047567     GOLGA6L7P
36  chr21   23023578       23192690     NR_038872     LINC00317
37  chr21   23023578       23192690     NR_109958     LINC01425,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21948249       22306003  NM_001001912      OR4E2
1   chr14   21948249       22306003  NM_001005465     OR10G3
2   chr14   21948249       22306003  NM_001005466     OR10G2
3   chr14   21948249       22306003  NM_001303523       TOX4
4   chr14   21948249       22306003  NM_001317107      OR4E1
5   chr14   21948249       22306003     NM_019852     METTL3
6   chr14   21948249       22306003     NR_111966      SALL2
8   chr14   75108893       75212216  NM_001039479      AREL1
9   chr14   75108893       75212216  NM_001318508       FCF1
11  chr22   19032871       19389863  NM_001184781      DGCR2
12  chr22   19032871       19389863  NM_001256534    SLC25A1
13  chr22   19032871       19389863     NM_001835     CLTCL1
14  chr22   19032871       19389863     NM_003325       HIRA
15  chr22   19032871       19389863     NM_005315       GSC2
17  chr22   19032871       19389863     NM_022719     DGCR14
18  chr22   19032871       19389863     NM_053006      TSSK2
19  chr22   19032871       19389863     NR_024157     DGCR11
20  chr22   19032871       19389863     NR_103767  LINC01311
21   chr4   94150690       94307545     NM_001510      GRID2
22   chr4  169203873      169330863  NM_001012967     DDX60L
24   chr4  169203873      169330863     NM_017631      DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143498373      143794188  NM_001123068       PPIAL4G
1    chr1  143498373      143794188     NR_104014     LINC01138
2    chr1  143498373      143794188     NR_106967       MIR6077
3    chr1  143498373      143794188     NR_111930  LOC100132057
4   chr14   21747717       22480557  NM_001001912         OR4E2
5   chr14   21747717       22480557  NM_001005465        OR10G3
6   chr14   21747717       22480557  NM_001005466        OR10G2
7   chr14   21747717       22480557  NM_001163380         RAB2B
8   chr14   21747717       22480557  NM_001170629          CHD8
9   chr14   21747717       22480557  NM_001303523          TOX4
10  chr14   21747717       22480557  NM_001317107         OR4E1
11  chr14   21747717       22480557     NM_007192       SUPT16H
12  chr14   21747717       22480557     NM_019852        METTL3
13  chr14   21747717       22480557     NM_020366       RPGRIP1
16  chr14   21747717       22480557     NR_002916        SNORD8
17  chr14   21747717       22480557     NR_003029        SNORD9
18  chr14   21747717       22480557     NR_111966         SALL2
20  chr19   23420560       23522680     NR_045525        ZNF724
21  chr19   23420560       23522680     NR_103741        IPO5P1
22   chr3     837177         950900     NR_110118     LINC01266
23   chr7   75753716       75867439  NM_001110199         SRRM3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr13   80805132       81207948  NM_001318536     SPRY2
3   chr14   21762813       21876003  NM_001170629      CHD8
4   chr14   21762813       21876003     NM_007192   SUPT16H
5   chr14   21762813       21876003     NM_020366   RPGRIP1
7   chr14   21762813       21876003     NR_002916    SNORD8
8   chr14   21762813       21876003     NR_003029    SNORD9
9   chr18   56100920       56319032     NM_052947     ALPK2
10  chr18   56100920       56319032     NR_029667    MIR122
11  chr18   56100920       56319032     NR_039899   MIR3591
12  chr18   56100920       56319032     NR_132963  SNORA108
13   chr7  110504383      110771045  NM_001099658     LRRN3
14   chr7  110504383      110771045  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   46158173       46273182     NM_182542       ERICH6B
1   chr13   46158173       46273182     NR_125786     LINC01055
2   chr14   21768392       23066914  NM_001001912         OR4E2
3   chr14   21768392       23066914  NM_001005465        OR10G3
4   chr14   21768392       23066914  NM_001005466        OR10G2
5   chr14   21768392       23066914  NM_001163380         RAB2B
6   chr14   21768392       23066914  NM_001170629          CHD8
7   chr14   21768392       23066914  NM_001303523          TOX4
8   chr14   21768392       23066914  NM_001317107         OR4E1
9   chr14   21768392       23066914     NM_001344          DAD1
10  chr14   21768392       23066914     NM_007192       SUPT16H
11  chr14   21768392       23066914     NM_019852        METTL3
12  chr14   21768392       23066914     NM_020366       RPGRIP1
15  chr14   21768392       23066914     NR_002916        SNORD8
16  chr14   21768392       23066914     NR_003029        SNORD9
17  chr14   21768392       23066914     NR_111966         SALL2
19  chr20   14653503       14779701     NM_080676       MACROD2
20   chr9   44311907       45801985     NR_027421        FAM27C
21   chr9   44311907       45801985     NR_121564  LOC101927827
22   chr9   44311907       45801985     NR_121606  LOC102723709
23   chr9   44311907       45801985     NR_126050  LOC103908605
24   chr9   44311907       45801985     NR_144466  LOC105379807,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  237469554      237728084     NM_001035          RYR2
1    chr1  237469554      237728084     NR_039626       MIR4428
2   chr14   21777061       21914886  NM_001170629          CHD8
3   chr14   21777061       21914886     NM_007192       SUPT16H
4   chr14   21777061       21914886     NM_020366       RPGRIP1
6   chr14   21777061       21914886     NR_002916        SNORD8
7   chr14   21777061       21914886     NR_003029        SNORD9
8   chr16   78935448       79081813     NM_016373          WWOX
9   chr17   21283600       21605875  NM_001113434      C17orf51
10  chr17   21283600       21605875  NM_001194958        KCNJ18
11  chr17   21283600       21605875     NM_021012        KCNJ12
12   chr2  133545600      133682109     NM_207363        NCKAP5
13   chr2  133545600      133682109     NR_135572  LOC101928185
14   chr3    1346725        1470067  NM_001289081         CNTN6
15   chr6   77512037       78306225     NM_000863         HTR1B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21942134       22208563  NM_001001912         OR4E2
1   chr14   21942134       22208563  NM_001005465        OR10G3
2   chr14   21942134       22208563  NM_001005466        OR10G2
3   chr14   21942134       22208563  NM_001163380         RAB2B
4   chr14   21942134       22208563  NM_001303523          TOX4
5   chr14   21942134       22208563  NM_001317107         OR4E1
6   chr14   21942134       22208563     NM_019852        METTL3
8   chr14   21942134       22208563     NR_111966         SALL2
10  chr16   21700502       21878011  NM_001161683          OTOA
11  chr16   21700502       21878011  NM_001310148        NPIPB4
14  chr16   21700502       21878011     NR_003370        RRN3P1
15   chr7  110649634      110773105  NM_001099658         LRRN3
16   chr7  110649634      110773105  NM_001244606        IMMP2L
18   chr9   26320588       28815517     NM_000459           TEK
19   chr9   26320588       28815517  NM_001031689          PLAA
20   chr9   26320588       28815517  NM_001099222         IFT74
23   chr9   26320588       28815517  NM_001161585          EQTN
24   chr9   26320588       28815517  NM_001167575         CAAP1
25   chr9   26320588       28815517  NM_001256054       C9orf72
26   chr9   26320588       28815517  NM_001258282        LINGO2
29   chr9   26320588       28815517     NM_020124          IFNK
30   chr9   26320588       28815517     NM_022901        LRRC19
31   chr9   26320588       28815517     NM_024761         MOB3B
35   chr9   26320588       28815517     NR_026679     LINC00032
36   chr9   26320588       28815517     NR_121605     IFT74-AS1
37   chr9   41919153       42022375     NR_003670        FGF7P3
38   chr9   41919153       42022375     NR_015363         GLIDR
41   chr9   41919153       42022375     NR_126048  LOC102724238
42   chr9   41919153       42022375     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   80826540       81000513  NM_001318536         SPRY2
3   chr14   21948868       22162331  NM_001001912         OR4E2
4   chr14   21948868       22162331  NM_001005465        OR10G3
5   chr14   21948868       22162331  NM_001005466        OR10G2
6   chr14   21948868       22162331  NM_001303523          TOX4
7   chr14   21948868       22162331  NM_001317107         OR4E1
8   chr14   21948868       22162331     NM_019852        METTL3
9   chr14   21948868       22162331     NR_111966         SALL2
11  chr16   83075404       83194148  NM_001220488         CDH13
13  chr17   64527255       64837776     NM_002737         PRKCA
14  chr17   64527255       64837776     NR_030364        MIR634
15  chr21   40166014       40374938  NM_001256295          ETS2
17  chr21   40166014       40374938     NR_109926  LOC101928398
18  chr21   40166014       40374938     NR_109962  LOC101928435
19  chr21   40166014       40374938     NR_120405     LOC400867
20   chr8    6764267        6899506  NM_001302265        DEFA1B
21   chr8    6764267        6899506     NM_001925         DEFA4
22   chr8    6764267        6899506     NM_001926         DEFA6
23   chr8    6764267        6899506     NM_004084         DEFA1
25   chr8    6764267        6899506     NM_005217         DEFA3
26   chr8    6764267        6899506     NR_029386       DEFA10P
27   chr8    6764267        6899506     NR_036686        DEFT1P
29   chr8    6764267        6899506     NR_073407        DEFA8P
30   chr8    6764267        6899506     NR_073408        DEFA9P
31   chr8    6764267        6899506     NR_073421       DEFA11P
32   chr9   30377843       30550457     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   12778386       12996792  NM_001009611   PRAMEF4
1    chr1   12778386       12996792  NM_001012276   PRAMEF8
2    chr1   12778386       12996792  NM_001013631  HNRNPCL1
3    chr1   12778386       12996792  NM_001080830  PRAMEF12
4    chr1   12778386       12996792  NM_001103170   AADACL3
5    chr1   12778386       12996792  NM_001146181  HNRNPCL3
6    chr1   12778386       12996792  NM_001146344  PRAMEF11
7    chr1   12778386       12996792  NM_001294139   PRAMEF1
8    chr1   12778386       12996792  NM_001302551  HNRNPCL4
10   chr1   12778386       12996792     NM_023014   PRAMEF2
11   chr1   12778386       12996792     NM_152290  C1orf158
12  chr14   21863766       21998251  NM_001163380     RAB2B
13  chr14   21863766       21998251  NM_001170629      CHD8
14  chr14   21863766       21998251  NM_001303523      TOX4
15  chr14   21863766       21998251     NM_019852    METTL3
18  chr14   21863766       21998251     NR_002916    SNORD8
19  chr14   21863766       21998251     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143679090      143799668  NM_001123068       PPIAL4G
1    chr1  143679090      143799668     NR_104014     LINC01138
2    chr1  143679090      143799668     NR_111930  LOC100132057
3   chr14   21841500       21982321  NM_001163380         RAB2B
4   chr14   21841500       21982321  NM_001170629          CHD8
5   chr14   21841500       21982321  NM_001303523          TOX4
6   chr14   21841500       21982321     NM_007192       SUPT16H
7   chr14   21841500       21982321     NM_019852        METTL3
10  chr14   21841500       21982321     NR_002916        SNORD8
11  chr14   21841500       21982321     NR_003029        SNORD9
12  chr15   99950373      100131814     NM_005587         MEF2A
13   chr7   64085437       64206254  NM_001282360        ZNF107
15   chr7   64085437       64206254     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   40275048       40638677  NM_001258419        LRRC4C
2   chr15   28750645       29528566  NM_001130414         APBA2
3   chr15   28750645       29528566  NM_001282468       GOLGA8M
4   chr15   28750645       29528566     NM_015307      FAM189A1
5   chr15   28750645       29528566     NR_026589       WHAMMP2
6   chr15   28750645       29528566     NR_033351       GOLGA8F
7   chr15   28750645       29528566     NR_033353       GOLGA8G
8   chr15   28750645       29528566     NR_036443       HERC2P9
9   chr15   28750645       29528566     NR_036475  LOC100289656
10  chr15   28750645       29528566     NR_037599     PDCD6IPP2
11  chr15   28750645       29528566     NR_047567     GOLGA6L7P
12  chr20   41012685       41147303     NM_133170         PTPRT,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  187165879      187334168     NR_126347  LINC01036
1   chr10    1990915        2095230     NR_040253  LINC00700
2   chr12   17801831       17994318     NR_039770    MIR3974
3   chr14   21837486       22034794  NM_001163380      RAB2B
4   chr14   21837486       22034794  NM_001170629       CHD8
5   chr14   21837486       22034794  NM_001303523       TOX4
6   chr14   21837486       22034794     NM_007192    SUPT16H
7   chr14   21837486       22034794     NM_019852     METTL3
10  chr14   21837486       22034794     NR_002916     SNORD8
11  chr14   21837486       22034794     NR_003029     SNORD9
12  chr14   21837486       22034794     NR_111966      SALL2
14   chr7   75106882       75279765  NM_001099415    POM121C
15   chr7   75106882       75279765  NM_001243198       HIP1
16   chr7   75106882       75279765  NM_001306141     SPDYE5
17   chr7   75106882       75279765     NR_028059     PMS2P3
18   chr7  109563164      109718866     NR_003024    EIF3IP1
19   chr7  110604421      110735391  NM_001099658      LRRN3
20   chr7  110604421      110735391  NM_001244606     IMMP2L
22   chr9   41606034       41731803     NR_003528    ZNF658B,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr22   17266319       17551892  NM_001037814      GAB4
1  chr22   17266319       17551892     NM_175878      XKR3
2  chr22   17266319       17551892     NR_003607   HSFY1P1
3  chr22   17266319       17551892     NR_015352     CECR7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21825853       21926582  NM_001170629          CHD8
1   chr14   21825853       21926582     NM_007192       SUPT16H
3   chr14   21825853       21926582     NR_002916        SNORD8
4   chr14   21825853       21926582     NR_003029        SNORD9
5   chr22   20630241       21040666  NM_001256523         ZNF74
6   chr22   20630241       21040666  NM_001293236         MED15
8   chr22   20630241       21040666     NM_153334        SCARF2
9   chr22   20630241       21040666     NR_033825        KLHL22
10  chr22   20630241       21040666     NR_136569     LOC729461
11  chr22   20630241       21040666     NR_136572  LOC101927859
12   chr4   66456710       66562312  NM_001281766         EPHA5
15   chr4   66456710       66562312     NR_034138     EPHA5-AS1
16   chr7    8555716        8820471     NM_152745         NXPH1
17   chr9   25453309       25759425  NM_001004125         TUSC1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   71466301       71645577     NM_004616    TSPAN8
1   chr12  130247163      130434048     NM_133448  TMEM132D
2   chr14   21817590       21996155  NM_001163380     RAB2B
3   chr14   21817590       21996155  NM_001170629      CHD8
4   chr14   21817590       21996155  NM_001303523      TOX4
5   chr14   21817590       21996155     NM_007192   SUPT16H
6   chr14   21817590       21996155     NM_019852    METTL3
7   chr14   21817590       21996155     NM_020366   RPGRIP1
10  chr14   21817590       21996155     NR_002916    SNORD8
11  chr14   21817590       21996155     NR_003029    SNORD9
12  chr14   21817590       21996155     NR_111966     SALL2
14   chr5   82404868       82505775  NM_001318012     XRCC4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   67281671       67394026     NM_000852      GSTP1
1   chr11   67281671       67394026  NM_001166102     NDUFV1
2   chr11   67281671       67394026  NM_001318496      CABP2
3   chr11   67281671       67394026     NR_033791     DOC2GP
4   chr11   67281671       67394026     NR_130935   C11orf72
5   chr14   21746413       21906724  NM_001170629       CHD8
6   chr14   21746413       21906724     NM_007192    SUPT16H
7   chr14   21746413       21906724     NM_020366    RPGRIP1
9   chr14   21746413       21906724     NR_002916     SNORD8
10  chr14   21746413       21906724     NR_003029     SNORD9
11  chr16   69940971       70143567  NM_001136214    CLEC18A
12  chr16   69940971       70143567  NM_001270453       WWP2
18  chr16   69940971       70143567     NR_003610    PDXDC2P
19  chr16   69940971       70143567     NR_029681     MIR140
20  chr16   69940971       70143567     NR_036265  MIR1972-2
21   chr7  121403135      121551657  NM_001206838     PTPRZ1
22   chr9   39045161       39151918     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67944550       68076916  NM_001127384     CTNNA3
2   chr13   67268310       67421560     NM_020403      PCDH9
3   chr13   67268310       67421560     NR_046527  PCDH9-AS2
4   chr14   21744012       22148804  NM_001001912      OR4E2
5   chr14   21744012       22148804  NM_001005465     OR10G3
6   chr14   21744012       22148804  NM_001005466     OR10G2
7   chr14   21744012       22148804  NM_001163380      RAB2B
8   chr14   21744012       22148804  NM_001170629       CHD8
9   chr14   21744012       22148804  NM_001303523       TOX4
10  chr14   21744012       22148804  NM_001317107      OR4E1
11  chr14   21744012       22148804     NM_007192    SUPT16H
12  chr14   21744012       22148804     NM_019852     METTL3
13  chr14   21744012       22148804     NM_020366    RPGRIP1
16  chr14   21744012       22148804     NR_002916     SNORD8
17  chr14   21744012       22148804     NR_003029     SNORD9
18  chr14   21744012       22148804     NR_111966      SALL2
20   chr7  110506538      110670903  NM_001244606     IMMP2L
22   chr9   30377092       30479101     NR_046204  LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21831013       21954355  NM_001163380         RAB2B
1   chr14   21831013       21954355  NM_001170629          CHD8
2   chr14   21831013       21954355  NM_001303523          TOX4
3   chr14   21831013       21954355     NM_007192       SUPT16H
6   chr14   21831013       21954355     NR_002916        SNORD8
7   chr14   21831013       21954355     NR_003029        SNORD9
8    chr2   97513028       97870782  NM_001122646       FAM178B
9    chr2   97513028       97870782  NM_001164315       ANKRD36
11   chr2   97513028       97870782  NM_001320849        FAHD2B
12   chr2   97513028       97870782     NM_016466       ANKRD39
14   chr2   97513028       97870782     NM_017789        SEMA4C
16   chr2   97513028       97870782     NR_110209  LOC101927053
17  chr20   14895790       15205425  NM_001033087       MACROD2
19  chr20   14895790       15205425     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  190017061      190143979  NM_001317188         BRINP3
2   chr16   14716293       16109602  NM_001040113          MYH11
3   chr16   14716293       16109602  NM_001128423         MPV17L
4   chr16   14716293       16109602  NM_001134477           PARN
5   chr16   14716293       16109602  NM_001142469       C16orf45
6   chr16   14716293       16109602  NM_001143979           NDE1
7   chr16   14716293       16109602  NM_001184998       KIAA0430
8   chr16   14716293       16109602  NM_001270767          NTAN1
9   chr16   14716293       16109602  NM_001277323         NPIPA3
11  chr16   14716293       16109602  NM_001277324         NPIPA2
13  chr16   14716293       16109602  NM_001277325         NPIPA5
14  chr16   14716293       16109602  NM_001285445         PDXDC1
19  chr16   14716293       16109602  NM_001301064           RRN3
21  chr16   14716293       16109602     NM_004996          ABCC1
22  chr16   14716293       16109602     NM_006985         NPIPA1
23  chr16   14716293       16109602     NM_014287          NOMO1
24  chr16   14716293       16109602     NM_016561           BFAR
27  chr16   14716293       16109602     NR_023387        ABCC6P2
28  chr16   14716293       16109602     NR_030159         MIR484
29  chr16   14716293       16109602     NR_036140      MIR3179-1
30  chr16   14716293       16109602     NR_036141      MIR3180-1
31  chr16   14716293       16109602     NR_036142      MIR3180-2
32  chr16   14716293       16109602     NR_037466      MIR3180-4
33  chr16   14716293       16109602     NR_103772   LOC100288162
34  chr16   14716293       16109602     NR_106761        MIR6506
35  chr16   14716293       16109602     NR_106775      MIR6511B1
36  chr16   14716293       16109602     NR_106965      MIR6511B2
37  chr16   14716293       16109602     NR_106970      MIR6511A3
38  chr16   14716293       16109602     NR_107060      MIR6770-2
39  chr16   14716293       16109602     NR_123721  PKD1P6-NPIPP1
41  chr16   14716293       16109602     NR_125434   LOC100505915
42  chr16   14716293       16109602     NR_128713      MIR3670-4
43  chr16   14716293       16109602     NR_130755          FOPNL
44  chr16   14716293       16109602     NR_133651        PLA2G10
45  chr22   32411541       32541548     NM_000343         SLC5A1
47  chr22   32411541       32541548     NR_040114        AP1B1P1
48   chr6  162614244      162879987     NM_013988          PARK2
49   chr7   63900474       64002089  NM_001130022         ZNF680
51   chr7  133212057      133323163     NM_021807          EXOC4
52   chr7  145984509      146236840     NM_014141        CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   19142941       19344358  NM_001142308        MALRD1
1   chr16   16327546       16486904  NM_001004067         NOMO3
2   chr16   16327546       16486904  NM_001282511        NPIPA8
3   chr16   16327546       16486904     NR_036140     MIR3179-1
4   chr16   16327546       16486904     NR_036141     MIR3180-1
5   chr16   16327546       16486904     NR_036142     MIR3180-2
6   chr16   16327546       16486904     NR_036447        PKD1P1
7   chr16   16327546       16486904     NR_103772  LOC100288162
8   chr16   16327546       16486904     NR_106766     MIR6511A1
9   chr16   16327546       16486904     NR_106971     MIR6511A4
10  chr16   16327546       16486904     NR_107060     MIR6770-2
11  chr16   16327546       16486904     NR_128713     MIR3670-4
12   chr6  162835030      164414029  NM_001080378         PACRG
14   chr6  162835030      164414029     NM_006775           QKI
15   chr6  162835030      164414029     NM_013988         PARK2
16   chr6  162835030      164414029     NR_028390     PACRG-AS1
17   chr6  162835030      164414029     NR_033862  DKFZp451B082
18   chr6  162835030      164414029     NR_037593          CAHM
19   chr6  162835030      164414029     NR_110871     PACRG-AS2
21   chr6  162835030      164414029     NR_122120     PACRG-AS3
22   chr6  162835030      164414029     NR_134620  LOC102724152
23   chr7  110577298      111052713  NM_001099658         LRRN3
24   chr7  110577298      111052713  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   71453472       71626455     NM_004616     TSPAN8
1   chr14   21786718       21988135  NM_001163380      RAB2B
2   chr14   21786718       21988135  NM_001170629       CHD8
3   chr14   21786718       21988135  NM_001303523       TOX4
4   chr14   21786718       21988135     NM_007192    SUPT16H
5   chr14   21786718       21988135     NM_019852     METTL3
6   chr14   21786718       21988135     NM_020366    RPGRIP1
9   chr14   21786718       21988135     NR_002916     SNORD8
10  chr14   21786718       21988135     NR_003029     SNORD9
11  chr16   68591517       68709766  NM_001305204      ZFP90
13  chr16   68591517       68709766  NM_001317195       CDH3
14   chr2   97268318       97449759  NM_001115016     KANSL3
15   chr2   97268318       97449759  NM_001293083     FER1L5
16   chr2   97268318       97449759  NM_001322354     LMAN2L
17   chr2   97268318       97449759     NM_020184      CNNM4
20   chr9   39114637       39517453  NM_001085452  SPATA31A1
21   chr9   39114637       39517453     NM_033655    CNTNAP3
22   chr9   39114637       39517453     NR_003528    ZNF658B
23   chr9   39114637       39517453     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21932177       22857402  NM_001001912         OR4E2
1   chr14   21932177       22857402  NM_001005465        OR10G3
2   chr14   21932177       22857402  NM_001005466        OR10G2
3   chr14   21932177       22857402  NM_001163380         RAB2B
4   chr14   21932177       22857402  NM_001303523          TOX4
5   chr14   21932177       22857402  NM_001317107         OR4E1
6   chr14   21932177       22857402     NM_019852        METTL3
8   chr14   21932177       22857402     NR_111966         SALL2
10  chr22   17221303       18762094  NM_001037814          GAB4
11  chr22   17221303       18762094  NM_001122731        MICAL3
12  chr22   17221303       18762094  NM_001127649         PEX26
14  chr22   17221303       18762094  NM_001163079         CECR6
15  chr22   17221303       18762094  NM_001193414         TUBA8
17  chr22   17221303       18762094  NM_001244567           BID
20  chr22   17221303       18762094  NM_001270733       BCL2L13
21  chr22   17221303       18762094  NM_001282227         CECR1
23  chr22   17221303       18762094  NM_001288707  LOC101929372
24  chr22   17221303       18762094  NM_001289905        IL17RA
25  chr22   17221303       18762094  NM_001290046         CECR2
27  chr22   17221303       18762094  NM_001303484      SLC25A18
28  chr22   17221303       18762094     NM_001696      ATP6V1E1
31  chr22   17221303       18762094     NM_017414         USP18
32  chr22   17221303       18762094     NM_017829         CECR5
35  chr22   17221303       18762094     NM_175878          XKR3
37  chr22   17221303       18762094     NR_003267         GGT3P
38  chr22   17221303       18762094     NR_003607       HSFY1P1
39  chr22   17221303       18762094     NR_015352         CECR7
40  chr22   17221303       18762094     NR_024417      FLJ41941
41  chr22   17221303       18762094     NR_024482     CECR5-AS1
42  chr22   17221303       18762094     NR_030378        MIR648
43  chr22   17221303       18762094     NR_036168     MIR3198-1
44  chr22   17221303       18762094     NR_038398         CECR3
46  chr22   17221303       18762094     NR_103718     LINC00528
47  chr22   17221303       18762094     NR_103793  LOC100996342
48  chr22   17221303       18762094     NR_134584  LOC101929350
49  chr22   17221303       18762094     NR_136561     LOC642643
50  chr22   17221303       18762094     NR_136570  LOC100996415
51  chr22   17221303       18762094     NR_136574  LOC105379550
52   chr8  124939546      125093465  NM_001039112        FER1L6
53   chr8  124939546      125093465     NR_040044    FER1L6-AS1
54   chr8  124939546      125093465     NR_103547    FER1L6-AS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   21151059       21252789     NR_040094     LINC01193
1   chr16    8656008        8834342     NM_000663          ABAT
4   chr16    8656008        8834342     NM_024109       METTL22
5   chr16   16367887       16474320  NM_001004067         NOMO3
6   chr16   16367887       16474320  NM_001282511        NPIPA8
7   chr16   16367887       16474320     NR_036140     MIR3179-1
8   chr16   16367887       16474320     NR_036141     MIR3180-1
9   chr16   16367887       16474320     NR_036142     MIR3180-2
10  chr16   16367887       16474320     NR_036447        PKD1P1
11  chr16   16367887       16474320     NR_103772  LOC100288162
12  chr16   16367887       16474320     NR_106766     MIR6511A1
13  chr16   16367887       16474320     NR_106971     MIR6511A4
14  chr16   16367887       16474320     NR_107060     MIR6770-2
15  chr16   16367887       16474320     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr11   67339121       67740484     NM_000695            ALDH3B2
1   chr11   67339121       67740484     NM_000852              GSTP1
3   chr11   67339121       67740484  NM_001166102             NDUFV1
4   chr11   67339121       67740484  NM_001243750              NUDT8
5   chr11   67339121       67740484     NM_005995              TBX10
6   chr11   67339121       67740484     NM_080658               ACY3
8   chr11   67339121       67740484     NR_024249           FAM86C2P
9   chr11   67339121       67740484     NR_033791             DOC2GP
10  chr11   67339121       67740484     NR_130935           C11orf72
11  chr22   17083981       17785338  NM_001037814               GAB4
12  chr22   17083981       17785338  NM_001163079              CECR6
13  chr22   17083981       17785338  NM_001282227              CECR1
15  chr22   17083981       17785338  NM_001289905             IL17RA
16  chr22   17083981       17785338     NM_017829              CECR5
19  chr22   17083981       17785338     NM_175878               XKR3
21  chr22   17083981       17785338     NR_001591             TPTEP1
22  chr22   17083981       17785338     NR_003607            HSFY1P1
23  chr22   17083981       17785338     NR_015352              CECR7
24  chr22   17083981       17785338     NR_024482          CECR5-AS1
25  chr22   17083981       17785338     NR_038398              CECR3
26  chr22   17083981       17785338     NR_040115  ANKRD62P1-PARP4P3
27  chr22   17083981       17785338     NR_103793       LOC100996342
28  chr22   17083981       17785338     NR_134584       LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   55692284       55982160  NM_001142770        PCDH15
3   chr11    7823238        8557200  NM_001003745        OR10A3
4   chr11    7823238        8557200  NM_001004461        OR10A6
5   chr11    7823238        8557200  NM_001135109          RIC3
6   chr11    7823238        8557200  NM_001270428          LMO1
7   chr11    7823238        8557200  NM_001289059         STK33
9   chr11    7823238        8557200     NM_003320           TUB
10  chr11    7823238        8557200     NM_003754         EIF3F
11  chr11    7823238        8557200     NM_153445         OR5P3
12  chr11    7823238        8557200     NM_176821        NLRP10
14  chr11    7823238        8557200     NR_027711        OR5E1P
15  chr11    7823238        8557200     NR_036678     LOC283299
18  chr11    7823238        8557200     NR_120537       TUB-AS1
19  chr11    7823238        8557200     NR_125366        CASC23
21  chr17    1203192        1468599  NM_001080779         MYO1C
23  chr17    1203192        1468599     NM_005206           CRK
24  chr17    1203192        1468599     NM_006224        PITPNA
25  chr17    1203192        1468599     NM_006761         YWHAE
26  chr17    1203192        1468599     NM_016532        INPP5K
28  chr17    1203192        1468599     NM_172367         TUSC5
29  chr17    1203192        1468599     NR_028514    PITPNA-AS1
30   chr2   97141636       97487305  NM_001115016        KANSL3
31   chr2   97141636       97487305  NM_001285485        NEURL3
32   chr2   97141636       97487305  NM_001293083        FER1L5
33   chr2   97141636       97487305  NM_001319085        ARID5A
35   chr2   97141636       97487305  NM_001322354        LMAN2L
36   chr2   97141636       97487305     NM_017623         CNNM3
37   chr2   97141636       97487305     NM_020184         CNNM4
39   chr2   97141636       97487305     NR_036074       MIR3127
42   chr2   97141636       97487305     NR_135564  LOC105373496
43  chr22   17217638       17685273  NM_001037814          GAB4
44  chr22   17217638       17685273  NM_001163079         CECR6
45  chr22   17217638       17685273  NM_001282227         CECR1
47  chr22   17217638       17685273  NM_001289905        IL17RA
48  chr22   17217638       17685273     NM_017829         CECR5
51  chr22   17217638       17685273     NM_175878          XKR3
53  chr22   17217638       17685273     NR_003607       HSFY1P1
54  chr22   17217638       17685273     NR_015352         CECR7
55  chr22   17217638       17685273     NR_024482     CECR5-AS1
56  chr22   17217638       17685273     NR_103793  LOC100996342
57  chr22   17217638       17685273     NR_134584  LOC101929350
58   chr4   69177430       69312739  NM_001031732        YTHDC1
59   chr4   69277961       69391541     NM_014058     TMPRSS11E
60   chr9   28596741       28702583  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   95292244       95540639     NM_007084         SOX21
1   chr13   95292244       95540639     NR_046514     SOX21-AS1
2   chr13   95292244       95540639     NR_110754  LOC101927284
3   chr13   95292244       95540639     NR_120417  LOC101927248
4   chr15   28757976       28890774     NR_033351       GOLGA8F
5   chr15   28757976       28890774     NR_033353       GOLGA8G
6   chr16   18437340       19421727  NM_001004060         NOMO2
7   chr16   18437340       19421727     NM_001019        RPS15A
8   chr16   18437340       19421727  NM_001160364          TMC7
9   chr16   18437340       19421727  NM_001190983          COQ7
10  chr16   18437340       19421727  NM_001256720       CLEC19A
12  chr16   18437340       19421727  NM_001308157         SYT17
13  chr16   18437340       19421727  NM_001313858       ARL6IP1
16  chr16   18437340       19421727     NM_015092          SMG1
20  chr16   18437340       19421727     NR_003569       ABCC6P1
21  chr16   18437340       19421727     NR_028028      ITPRIPL2
22  chr16   18437340       19421727     NR_036140     MIR3179-1
23  chr16   18437340       19421727     NR_036142     MIR3180-2
24  chr16   18437340       19421727     NR_036144     MIR3180-3
25  chr16   18437340       19421727     NR_037442     MIR3670-1
26  chr16   18437340       19421727     NR_103772  LOC100288162
27  chr16   18437340       19421727     NR_106971     MIR6511A4
28  chr16   18437340       19421727     NR_107060     MIR6770-2
29  chr16   18437340       19421727     NR_119379  LOC102723385
31   chr5   17630456       18039559     NR_134286     LOC646241
33   chr9   28586573       28719732  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11     670359         997990     NM_001004         RPLP2
1   chr11     670359         997990  NM_001025234        TSPAN4
4   chr11     670359         997990  NM_001039490         CD151
5   chr11     670359         997990  NM_001042463        TMEM80
6   chr11     670359         997990  NM_001142675         CHID1
7   chr11     670359         997990  NM_001191060      SLC25A22
10  chr11     670359         997990  NM_001286606       CRACR2B
11  chr11     670359         997990  NM_001293167         PANO1
12  chr11     670359         997990  NM_001318824         PDDC1
14  chr11     670359         997990     NM_006755        TALDO1
15  chr11     670359         997990     NM_012305         AP2A2
16  chr11     670359         997990     NM_016564         CEND1
17  chr11     670359         997990     NM_020376        PNPLA2
18  chr11     670359         997990     NM_021008         DEAF1
19  chr11     670359         997990     NM_021128        POLR2L
20  chr11     670359         997990     NM_022772        EPS8L2
23  chr11     670359         997990     NM_145886         PIDD1
24  chr11     670359         997990     NR_002585       SNORA52
25  chr11     670359         997990     NR_126342     LOC171391
26  chr16   29547020       30147223     NM_000034         ALDOA
27  chr16   29547020       30147223  NM_001030288           SPN
28  chr16   29547020       30147223  NM_001040056         MAPK3
29  chr16   29547020       30147223  NM_001083613       TMEM219
30  chr16   29547020       30147223  NM_001109659      C16orf92
32  chr16   29547020       30147223  NM_001114099        SEZ6L2
34  chr16   29547020       30147223  NM_001145524         YPEL3
36  chr16   29547020       30147223  NM_001256269         KIF22
38  chr16   29547020       30147223  NM_001256443         PRRT2
39  chr16   29547020       30147223  NM_001276275           MAZ
40  chr16   29547020       30147223  NM_001282062         DOC2A
43  chr16   29547020       30147223  NM_001286585         CDIPT
44  chr16   29547020       30147223  NM_001293204           MVP
45  chr16   29547020       30147223  NM_001303507         PPP4C
46  chr16   29547020       30147223  NM_001304562        INO80E
47  chr16   29547020       30147223  NM_001318249          QPRT
48  chr16   29547020       30147223  NM_001318504        FAM57B
52  chr16   29547020       30147223     NM_003609        HIRIP3
53  chr16   29547020       30147223     NM_004608          TBX6
54  chr16   29547020       30147223     NM_004783         TAOK2
57  chr16   29547020       30147223     NM_024307         GDPD3
58  chr16   29547020       30147223     NM_024516         PAGR1
61  chr16   29547020       30147223     NM_152338          ZG16
62  chr16   29547020       30147223     NM_175900      C16orf54
63  chr16   29547020       30147223     NM_178863        KCTD13
64  chr16   29547020       30147223     NM_181718        ASPHD1
66  chr16   29547020       30147223     NR_015396     CDIPT-AS1
68  chr16   29547020       30147223     NR_049833     MIR3680-2
70  chr16   29547020       30147223     NR_135192  LOC101928595
71  chr16   29547020       30147223     NR_135305        SMG1P2
73   chr2  133610779      133898675     NM_207363        NCKAP5
74   chr2  133610779      133898675     NR_135572  LOC101928185
75  chr20   14690951       14816026     NM_080676       MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21765159       22177757  NM_001001912         OR4E2
1   chr14   21765159       22177757  NM_001005465        OR10G3
2   chr14   21765159       22177757  NM_001005466        OR10G2
3   chr14   21765159       22177757  NM_001163380         RAB2B
4   chr14   21765159       22177757  NM_001170629          CHD8
5   chr14   21765159       22177757  NM_001303523          TOX4
6   chr14   21765159       22177757  NM_001317107         OR4E1
7   chr14   21765159       22177757     NM_007192       SUPT16H
8   chr14   21765159       22177757     NM_019852        METTL3
9   chr14   21765159       22177757     NM_020366       RPGRIP1
12  chr14   21765159       22177757     NR_002916        SNORD8
13  chr14   21765159       22177757     NR_003029        SNORD9
14  chr14   21765159       22177757     NR_111966         SALL2
16   chr4  169242629      169352603  NM_001012967        DDX60L
18   chr5   95268062       95375732     NM_012081          ELL2
19   chr5   95268062       95375732     NR_130776  LOC101929710,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   72679302       73062828     NM_013381      TRHDE
1   chr14   21793858       22079431  NM_001005465     OR10G3
2   chr14   21793858       22079431  NM_001163380      RAB2B
3   chr14   21793858       22079431  NM_001170629       CHD8
4   chr14   21793858       22079431  NM_001303523       TOX4
5   chr14   21793858       22079431     NM_007192    SUPT16H
6   chr14   21793858       22079431     NM_019852     METTL3
7   chr14   21793858       22079431     NM_020366    RPGRIP1
10  chr14   21793858       22079431     NR_002916     SNORD8
11  chr14   21793858       22079431     NR_003029     SNORD9
12  chr14   21793858       22079431     NR_111966      SALL2
14  chr14   21877947       22024767  NM_001163380      RAB2B
15  chr14   21877947       22024767  NM_001170629       CHD8
16  chr14   21877947       22024767  NM_001303523       TOX4
17  chr14   21877947       22024767     NM_019852     METTL3
20  chr14   21877947       22024767     NR_111966      SALL2
22   chr4   69097731       69391632  NM_001031732     YTHDC1
23   chr4   69097731       69391632     NM_014058  TMPRSS11E
24   chr4   69097731       69391632     NM_182502  TMPRSS11B,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr8   15924943       16077873     NM_002445          MSR1
2  chr9   28592502       28765163  NM_001258282        LINGO2
4  chr9   41906866       42022463     NR_003670        FGF7P3
5  chr9   41906866       42022463     NR_015363         GLIDR
8  chr9   41906866       42022463     NR_126048  LOC102724238
9  chr9   41906866       42022463     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143497302      144122049  NM_001123068       PPIAL4G
1    chr1  143497302      144122049  NM_001287385        FAM72C
2    chr1  143497302      144122049  NM_001345942        FAM72D
6    chr1  143497302      144122049     NR_104014     LINC01138
7    chr1  143497302      144122049     NR_106967       MIR6077
8    chr1  143497302      144122049     NR_111930  LOC100132057
10  chr11  134199889      134505644     NM_054025        B3GAT1
11  chr11  134199889      134505644     NM_138342        GLB1L2
12  chr11  134199889      134505644     NR_033852     LOC283177,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    5112245        5414537  NM_001253908        AKR1C3
2   chr10    5112245        5414537     NM_001818        AKR1C4
4   chr10    5112245        5414537     NM_053049          UCN3
5   chr10    5112245        5414537     NR_027916       AKR1C8P
6   chr16   16378665       16496439  NM_001004067         NOMO3
7   chr16   16378665       16496439  NM_001282511        NPIPA8
8   chr16   16378665       16496439     NR_036140     MIR3179-1
9   chr16   16378665       16496439     NR_036141     MIR3180-1
10  chr16   16378665       16496439     NR_036142     MIR3180-2
11  chr16   16378665       16496439     NR_036447        PKD1P1
12  chr16   16378665       16496439     NR_103772  LOC100288162
13  chr16   16378665       16496439     NR_106766     MIR6511A1
14  chr16   16378665       16496439     NR_106971     MIR6511A4
15  chr16   16378665       16496439     NR_107060     MIR6770-2
16  chr16   16378665       16496439     NR_128713     MIR3670-4
17   chr9   67227608       67329950     NR_002817        AQP7P1
18   chr9   67227608       67329950     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49648320       49750329  NM_001323575         AGBL4
1    chr1   49648320       49750329     NR_125988  LOC101929721
2   chr14   21770705       21873674  NM_001170629          CHD8
3   chr14   21770705       21873674     NM_007192       SUPT16H
4   chr14   21770705       21873674     NM_020366       RPGRIP1
6   chr14   21770705       21873674     NR_002916        SNORD8
7   chr14   21770705       21873674     NR_003029        SNORD9
8   chr15   87233478       87363137     NM_152336         AGBL1
9    chr8    6607631        6707767     NM_018361        AGPAT5
10   chr8    6607631        6707767     NM_207411          XKR5
11   chr8    6607631        6707767     NR_045217    GS1-24F4.2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21618952       22352914  NM_001001912      OR4E2
1   chr14   21618952       22352914  NM_001004731     OR5AU1
2   chr14   21618952       22352914  NM_001005465     OR10G3
3   chr14   21618952       22352914  NM_001005466     OR10G2
4   chr14   21618952       22352914  NM_001163380      RAB2B
5   chr14   21618952       22352914  NM_001170629       CHD8
6   chr14   21618952       22352914  NM_001303523       TOX4
7   chr14   21618952       22352914  NM_001317107      OR4E1
8   chr14   21618952       22352914     NM_007192    SUPT16H
9   chr14   21618952       22352914     NM_019852     METTL3
10  chr14   21618952       22352914     NM_020366    RPGRIP1
12  chr14   21618952       22352914     NM_031314     HNRNPC
14  chr14   21618952       22352914     NR_002916     SNORD8
15  chr14   21618952       22352914     NR_003029     SNORD9
16  chr14   21618952       22352914     NR_038970  LINC00641
18  chr14   21618952       22352914     NR_111966      SALL2
20   chr2   34187694       35719827     NR_039629   MIR548AD
21   chr2   34187694       35719827     NR_126403  LINC01317
22   chr2   34187694       35719827     NR_126404  LINC01320
23   chr2   34187694       35719827     NR_132381  LINC01318
24   chr7  110767105      110889217  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr15   28813665       29049159  NM_001282468        GOLGA8M
1   chr15   28813665       29049159     NR_026589        WHAMMP2
2   chr15   28813665       29049159     NR_036443        HERC2P9
3   chr15   28813665       29049159     NR_036475   LOC100289656
4   chr15   28813665       29049159     NR_037599      PDCD6IPP2
5   chr15   30265198       30381292  NM_001282472        GOLGA8J
6    chr2  234337911      234468881     NM_003648           DGKD
7    chr2  234337911      234468881     NM_018218          USP40
9    chr2  242442052      242703211  NM_001164356          THAP4
10   chr2  242442052      242703211  NM_001165031          DTYMK
11   chr2  242442052      242703211  NM_001271978          STK25
14   chr2  242442052      242703211  NM_001287249         D2HGDH
15   chr2  242442052      242703211  NM_001330161           ING5
19   chr2  242442052      242703211     NM_032515            BOK
20   chr2  242442052      242703211     NM_178326          ATG4B
21   chr2  242442052      242703211     NR_033346        BOK-AS1
22   chr5     155128        1505486  NM_001003841        SLC6A19
23   chr5     155128        1505486  NM_001009877           BRD9
24   chr5     155128        1505486     NM_001044         SLC6A3
25   chr5     155128        1505486  NM_001080478        LRRC14B
26   chr5     155128        1505486  NM_001166260         TRIP13
27   chr5     155128        1505486  NM_001193376           TERT
28   chr5     155128        1505486  NM_001242412           AHRR
29   chr5     155128        1505486  NM_001284351         SLC9A3
31   chr5     155128        1505486     NM_004168           SDHA
33   chr5     155128        1505486     NM_006598        SLC12A7
34   chr5     155128        1505486     NM_007030           TPPP
35   chr5     155128        1505486     NM_007277          EXOC3
36   chr5     155128        1505486     NM_013232          PDCD6
37   chr5     155128        1505486     NM_018140          CEP72
38   chr5     155128        1505486     NM_024786        ZDHHC11
39   chr5     155128        1505486     NM_024830         LPCAT1
40   chr5     155128        1505486     NM_030782        CLPTM1L
41   chr5     155128        1505486     NM_033120           NKD2
42   chr5     155128        1505486     NM_052909       PLEKHG4B
43   chr5     155128        1505486     NM_145265        CCDC127
44   chr5     155128        1505486     NM_182632        SLC6A18
45   chr5     155128        1505486     NR_024158         PP7080
46   chr5     155128        1505486     NR_039661        MIR4456
47   chr5     155128        1505486     NR_039662        MIR4457
48   chr5     155128        1505486     NR_039778        MIR4635
50   chr5     155128        1505486     NR_103444   LOC100996325
51   chr5     155128        1505486     NR_104613          HRAT5
52   chr5     155128        1505486     NR_104614   LOC100506688
53   chr5     155128        1505486     NR_109911  CTD-3080P12.3
54   chr5     155128        1505486     NR_125375   LOC100288152
55   chr5     155128        1505486     NR_125810      LINC01511
56   chr5     155128        1505486     NR_126522      EXOC3-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245037874      245364336  NM_001143943        EFCAB2
2    chr1  245037874      245364336     NM_018012        KIF26B
4    chr1  245037874      245364336     NR_111907  LOC101928068
5   chr16   21496723       21622890  NM_001077180        METTL9
7   chr16   21496723       21622890     NR_002594      SLC7A5P2
8   chr16   21496723       21622890     NR_027155        SMG1P3
9   chr16   21496723       21622890     NR_049833     MIR3680-2
10  chr16   21496723       21622890     NR_110930  LOC101927814
11   chr3    1964946        2599668  NM_001206955         CNTN4
13   chr3    1964946        2599668     NR_046555     CNTN4-AS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   81847247       82108845     NR_120571     MIR4300HG
1   chr12   72582375       72818324     NM_013381         TRHDE
2   chr12   72582375       72818324     NR_026836     TRHDE-AS1
4   chr12   72548946       72790015     NM_013381         TRHDE
5   chr12   72548946       72790015     NR_026836     TRHDE-AS1
7   chr16   16399657       16528794  NM_001282511        NPIPA8
8   chr16   16399657       16528794     NR_036141     MIR3180-1
9   chr16   16399657       16528794     NR_036142     MIR3180-2
10  chr16   16399657       16528794     NR_036447        PKD1P1
11  chr16   16399657       16528794     NR_103772  LOC100288162
12  chr16   16399657       16528794     NR_106766     MIR6511A1
13  chr16   16399657       16528794     NR_106971     MIR6511A4
14  chr16   16399657       16528794     NR_107060     MIR6770-2
15  chr16   16399657       16528794     NR_128713     MIR3670-4
16   chr2   97155563       97690124  NM_001115016        KANSL3
17   chr2   97155563       97690124  NM_001122646       FAM178B
19   chr2   97155563       97690124  NM_001285485        NEURL3
20   chr2   97155563       97690124  NM_001293083        FER1L5
21   chr2   97155563       97690124  NM_001319085        ARID5A
23   chr2   97155563       97690124  NM_001322354        LMAN2L
24   chr2   97155563       97690124     NM_016466       ANKRD39
26   chr2   97155563       97690124     NM_017623         CNNM3
27   chr2   97155563       97690124     NM_017789        SEMA4C
28   chr2   97155563       97690124     NM_020184         CNNM4
30   chr2   97155563       97690124     NM_144994       ANKRD23
31   chr2   97155563       97690124     NR_036074       MIR3127
34   chr2   97155563       97690124     NR_110209  LOC101927053
35   chr2   97155563       97690124     NR_135564  LOC105373496
36  chr20   10847033       10951981     NR_109866  LOC101929413
37   chr3   65840319       65942049  NM_001033057         MAGI1
39   chr3   65840319       65942049     NR_046575     MAGI1-AS1
40   chr7    8854848       10386981     NR_002790          PER4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12806294       13205870  NM_001009611    PRAMEF4
1    chr1   12806294       13205870  NM_001010889    PRAMEF6
2    chr1   12806294       13205870  NM_001010890    PRAMEF9
3    chr1   12806294       13205870  NM_001012276    PRAMEF8
4    chr1   12806294       13205870  NM_001013407    PRAMEF5
5    chr1   12806294       13205870  NM_001013631   HNRNPCL1
6    chr1   12806294       13205870  NM_001080830   PRAMEF12
7    chr1   12806294       13205870  NM_001099850   PRAMEF18
8    chr1   12806294       13205870  NM_001100631   PRAMEF22
9    chr1   12806294       13205870  NM_001136561   HNRNPCL2
10   chr1   12806294       13205870  NM_001146181   HNRNPCL3
11   chr1   12806294       13205870  NM_001146344   PRAMEF11
12   chr1   12806294       13205870  NM_001294139    PRAMEF1
13   chr1   12806294       13205870  NM_001302551   HNRNPCL4
14   chr1   12806294       13205870  NM_001306072   PRAMEF26
15   chr1   12806294       13205870  NM_001310134   PRAMEF25
17   chr1   12806294       13205870     NM_023014    PRAMEF2
18   chr1   12806294       13205870     NM_152290   C1orf158
19   chr1   12806294       13205870     NR_111945  PRAMEF36P
21  chr11   31214281       31372235     NM_181807      DCDC1
22  chr11   59443764       59580048  NM_001005324     OR10V1
23  chr11   59443764       59580048  NM_001178040       STX3
24  chr11   59443764       59580048     NM_017840     MRPL16
25  chr11   59443764       59580048     NR_045005    OR10V2P
26  chr14   21804836       21976355  NM_001163380      RAB2B
27  chr14   21804836       21976355  NM_001170629       CHD8
28  chr14   21804836       21976355  NM_001303523       TOX4
29  chr14   21804836       21976355     NM_007192    SUPT16H
30  chr14   21804836       21976355     NM_019852     METTL3
31  chr14   21804836       21976355     NM_020366    RPGRIP1
34  chr14   21804836       21976355     NR_002916     SNORD8
35  chr14   21804836       21976355     NR_003029     SNORD9
36   chr2  109919613      110053587  NM_001099289     SH3RF3
37   chr2  109919613      110053587     NR_036224    MIR4266,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr6   90271180       90672543  NM_001137667      CASP8AP2
1  chr6   90271180       90672543  NM_001170794         BACH2
2  chr6   90271180       90672543  NM_001242809        ANKRD6
5  chr6   90271180       90672543     NM_014611          MDN1
6  chr6   90271180       90672543     NM_020466         LYRM2
7  chr6   90271180       90672543     NM_032602         GJA10
9  chr6   90271180       90672543     NR_111915  LOC101929057,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr15   28660030       30078151  NM_001130414              APBA2
1   chr15   28660030       30078151  NM_001282468            GOLGA8M
2   chr15   28660030       30078151  NM_001301025               TJP1
5   chr15   28660030       30078151     NM_015307           FAM189A1
6   chr15   28660030       30078151     NM_138704             NSMCE3
7   chr15   28660030       30078151     NR_026589            WHAMMP2
8   chr15   28660030       30078151     NR_033351            GOLGA8F
9   chr15   28660030       30078151     NR_033353            GOLGA8G
10  chr15   28660030       30078151     NR_036443            HERC2P9
11  chr15   28660030       30078151     NR_036475       LOC100289656
12  chr15   28660030       30078151     NR_037599          PDCD6IPP2
13  chr15   28660030       30078151     NR_039734          MIR4509-3
15  chr15   28660030       30078151     NR_047567          GOLGA6L7P
16  chr15   28660030       30078151     NR_135221       LOC100130111
17  chr22   17065089       17181949     NM_014406             CCT8L2
18  chr22   17065089       17181949     NR_001591             TPTEP1
19  chr22   17065089       17181949     NR_040115  ANKRD62P1-PARP4P3
20   chr6  162777375      162943557     NM_013988              PARK2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21895351       21997999  NM_001163380     RAB2B
1  chr14   21895351       21997999  NM_001170629      CHD8
2  chr14   21895351       21997999  NM_001303523      TOX4
3  chr14   21895351       21997999     NM_019852    METTL3
6  chr14   21895351       21997999     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   67870730       68004878  NM_001127384      CTNNA3
2   chr10   96501968       97920089     NM_000769     CYP2C19
3   chr10   96501968       97920089     NM_000770      CYP2C8
4   chr10   96501968       97920089     NM_000771      CYP2C9
5   chr10   96501968       97920089  NM_001001732      CC2D2B
6   chr10   96501968       97920089  NM_001098175      ENTPD1
7   chr10   96501968       97920089  NM_001130446   C10orf131
8   chr10   96501968       97920089  NM_001143973       TCTN3
10  chr10   96501968       97920089  NM_001278525     ZNF518A
12  chr10   96501968       97920089  NM_001290295      SORBS1
15  chr10   96501968       97920089  NM_001323413    ALDH18A1
19  chr10   96501968       97920089     NM_019084        CCNJ
20  chr10   96501968       97920089     NM_020992      PDLIM1
21  chr10   96501968       97920089     NM_207321       ACSM6
22  chr10   96501968       97920089     NR_036113     MIR3157
23  chr10   96501968       97920089     NR_038444  ENTPD1-AS1
26  chr14   21910524       22028564  NM_001163380       RAB2B
27  chr14   21910524       22028564  NM_001303523        TOX4
28  chr14   21910524       22028564     NM_019852      METTL3
30  chr14   21910524       22028564     NR_111966       SALL2
32   chr4   71390570       71719872  NM_001037442       RUFY3
33   chr4   71390570       71719872  NM_001098477       GRSF1
35   chr4   71390570       71719872  NM_001286731        AMTN
40   chr4   71390570       71719872     NM_016519        AMBN
41   chr4   71390570       71719872     NM_020368        UTP3
42   chr4   71390570       71719872     NM_031889        ENAM
43   chr4   71390570       71719872     NM_144646      JCHAIN
44   chr5   93440624       93933832  NM_001145678    KIAA0825
45   chr5   93440624       93933832  NM_001163418     FAM172A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28782034       28997221  NM_001282468       GOLGA8M
1   chr15   28782034       28997221     NR_026589       WHAMMP2
2   chr15   28782034       28997221     NR_036443       HERC2P9
3   chr19   10241849       10409753     NM_000201         ICAM1
4   chr19   10241849       10409753  NM_001318730         DNMT1
6   chr19   10241849       10409753     NM_001544         ICAM4
7   chr19   10241849       10409753     NM_003259         ICAM5
8   chr19   10241849       10409753     NM_004230         S1PR2
9   chr19   10241849       10409753     NM_015956         MRPL4
11  chr19   10241849       10409753     NR_036206       MIR4322
12   chr2   52007297       52135614     NR_135237     LOC730100
13   chr2  110204321      110358566  NM_001099289        SH3RF3
14   chr2  110204321      110358566  NM_001321504        SEPT10
16   chr4   69280741       69417765     NM_001077       UGT2B17
17   chr4   69280741       69417765     NM_014058     TMPRSS11E
18   chr5   98668843       98884918     NR_110562  CTD-2151A2.1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  145113214      145261949  NM_001277444        NBPF9
1    chr1  145113214      145261949  NM_001278267       NBPF20
2    chr1  145113214      145261949     NM_004892       SEC22B
3    chr1  145113214      145261949     NM_203458     NOTCH2NL
4   chr15   28506015       28998801  NM_001282468      GOLGA8M
5   chr15   28506015       28998801     NM_004667        HERC2
6   chr15   28506015       28998801     NR_026589      WHAMMP2
7   chr15   28506015       28998801     NR_033351      GOLGA8F
9   chr15   28506015       28998801     NR_033353      GOLGA8G
11  chr15   28506015       28998801     NR_036443      HERC2P9
12  chr15   28506015       28998801     NR_039734    MIR4509-3
14  chr20   14580395       14736893     NM_080676      MACROD2
15  chr20   14580395       14736893     NR_104193  MACROD2-IT1
16   chr7  110786924      110917570  NM_001244606       IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14702759       15044334     NM_080676      MACROD2
1  chr20   14702759       15044334     NR_037841  MACROD2-AS1
3   chr5  106840627      106946246     NM_001962        EFNA5
4   chr7  110796842      110896861  NM_001244606       IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21730624       22135419  NM_001001912      OR4E2
1   chr14   21730624       22135419  NM_001005465     OR10G3
2   chr14   21730624       22135419  NM_001005466     OR10G2
3   chr14   21730624       22135419  NM_001163380      RAB2B
4   chr14   21730624       22135419  NM_001170629       CHD8
5   chr14   21730624       22135419  NM_001303523       TOX4
6   chr14   21730624       22135419     NM_007192    SUPT16H
7   chr14   21730624       22135419     NM_019852     METTL3
8   chr14   21730624       22135419     NM_020366    RPGRIP1
10  chr14   21730624       22135419     NM_031314     HNRNPC
12  chr14   21730624       22135419     NR_002916     SNORD8
13  chr14   21730624       22135419     NR_003029     SNORD9
14  chr14   21730624       22135419     NR_111966      SALL2
16   chr4   69103216       69237049  NM_001031732     YTHDC1
17   chr4   69103216       69237049     NM_182502  TMPRSS11B,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1   49139981       49273231  NM_001302082          BEND5
1    chr1   49139981       49273231  NM_001323575          AGBL4
2    chr1  143753452      144483648  NM_001123068        PPIAL4G
3    chr1  143753452      144483648  NM_001135789        PPIAL4C
4    chr1  143753452      144483648  NM_001278267         NBPF20
5    chr1  143753452      144483648  NM_001287385         FAM72C
6    chr1  143753452      144483648  NM_001345942         FAM72D
10   chr1  143753452      144483648     NR_024511      LINC00623
12   chr1  143753452      144483648     NR_111953      LINC00869
14   chr1  145356268      145491013  NM_001039888       ANKRD34A
15   chr1  145356268      145491013  NM_001277444          NBPF9
16   chr1  145356268      145491013  NM_001278267         NBPF20
17   chr1  145356268      145491013  NM_001302371         NBPF10
18   chr1  145356268      145491013  NM_001313972          TXNIP
20   chr1  145356268      145491013     NM_032305        POLR3GL
21   chr1  145356268      145491013     NM_145277           HFE2
22   chr1  145356268      145491013     NM_153713          LIX1L
23   chr1  145356268      145491013     NR_104217        NBPF25P
24   chr1  145356268      145491013     NR_125967   LOC101928979
25  chr19    9341647        9591974  NM_001079935         OR7E24
26  chr19    9341647        9591974  NM_001172650  ZNF559-ZNF177
27  chr19    9341647        9591974  NM_001172651         ZNF177
28  chr19    9341647        9591974  NM_001202406         ZNF559
31  chr19    9341647        9591974  NM_001271314         ZNF266
33  chr19    9341647        9591974     NM_152476         ZNF560
34  chr19    9341647        9591974     NM_198535         ZNF699
35   chr2  214217518      214513840     NM_024532         SPAG16,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67188875       68347316     NM_000695       ALDH3B2
1   chr11   67188875       68347316     NM_000852         GSTP1
2   chr11   67188875       68347316  NM_001018070        CORO1B
4   chr11   67188875       68347316  NM_001078650       TMEM134
5   chr11   67188875       68347316  NM_001161473       ALDH3B1
6   chr11   67188875       68347316  NM_001164164        PPP6R3
7   chr11   67188875       68347316  NM_001166102        NDUFV1
8   chr11   67188875       68347316  NM_001166222        CARNS1
9   chr11   67188875       68347316  NM_001243750         NUDT8
11  chr11   67188875       68347316  NM_001300895         CABP4
13  chr11   67188875       68347316  NM_001300907         KMT5B
16  chr11   67188875       68347316  NM_001302959           AIP
17  chr11   67188875       68347316  NM_001318496         CABP2
18  chr11   67188875       68347316     NM_002335          LRP5
19  chr11   67188875       68347316     NM_002496        NDUFS8
20  chr11   67188875       68347316     NM_003952       RPS6KB2
22  chr11   67188875       68347316     NM_004910       PITPNM1
23  chr11   67188875       68347316     NM_005608       PTPRCAP
24  chr11   67188875       68347316     NM_005851       CDK2AP2
25  chr11   67188875       68347316     NM_005995         TBX10
26  chr11   67188875       68347316     NM_006019        TCIRG1
30  chr11   67188875       68347316     NM_022338      C11orf24
31  chr11   67188875       68347316     NM_030930       UNC93B1
32  chr11   67188875       68347316     NM_080658          ACY3
35  chr11   67188875       68347316     NM_206997        GPR152
36  chr11   67188875       68347316     NM_212469          CHKA
37  chr11   67188875       68347316     NR_024249      FAM86C2P
38  chr11   67188875       68347316     NR_033791        DOC2GP
39  chr11   67188875       68347316     NR_039840       MIR4691
41  chr11   67188875       68347316     NR_106810       MIR6752
..    ...        ...            ...           ...           ...
59  chr19   33185977       35423313  NM_001099437         ZNF30
60  chr19   33185977       35423313  NM_001105570        NUDT19
61  chr19   33185977       35423313  NM_001110822        TDRD12
62  chr19   33185977       35423313  NM_001127895         CHST8
64  chr19   33185977       35423313  NM_001129994        KCTD15
65  chr19   33185977       35423313  NM_001252296         CEBPG
66  chr19   33185977       35423313  NM_001285829         CEBPA
67  chr19   33185977       35423313  NM_001289789           GPI
69  chr19   33185977       35423313  NM_001300978        FAAP24
72  chr19   33185977       35423313     NM_002333          LRP3
73  chr19   33185977       35423313     NM_005499          UBA2
74  chr19   33185977       35423313     NM_014270        SLC7A9
75  chr19   33185977       35423313     NM_014686      KIAA0355
76  chr19   33185977       35423313     NM_015578        LSM14A
77  chr19   33185977       35423313     NM_019849       SLC7A10
79  chr19   33185977       35423313     NM_032346        PDCD2L
80  chr19   33185977       35423313     NM_032816         CEP89
81  chr19   33185977       35423313     NM_033103         RHPN2
82  chr19   33185977       35423313     NM_173479         WDR88
83  chr19   33185977       35423313     NR_026887     CEBPA-AS1
84  chr19   33185977       35423313     NR_027620      SCGB1B2P
85  chr19   33185977       35423313     NR_033982     LOC400685
86  chr19   33185977       35423313     NR_045208      SCGB2B3P
87  chr19   33185977       35423313     NR_046222     LINC00904
88  chr19   33185977       35423313     NR_110749     ZNF30-AS1
89  chr19   33185977       35423313     NR_135270       GPATCH1
90  chr21   29492569       29726432     NR_126010     LOC284825
91  chr21   29492569       29726432     NR_126012  LOC101927973
92   chr7  110585968      110706362  NM_001244606        IMMP2L
94   chr9   28160325       28284267  NM_001258282        LINGO2

[75 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr19     920250        1022295     NM_005224        ARID3A
1   chr19     920250        1022295     NM_024100         WDR18
2   chr19     920250        1022295     NM_032551        KISS1R
3   chr19     920250        1022295     NM_033420       TMEM259
4   chr19     920250        1022295     NM_138690        GRIN3B
5   chr19     920250        1022295     NR_125730        RNU6-2
6   chr19   24275372       24465524  NM_001278661        ZNF254
9   chr19   24275372       24465524     NR_003603      HAVCR1P1
10  chr22   17258010       17523417  NM_001037814          GAB4
11  chr22   17258010       17523417     NM_175878          XKR3
12  chr22   17258010       17523417     NR_003607       HSFY1P1
13  chr22   17258010       17523417     NR_015352         CECR7
14   chr4    8576141        8864096  NM_001014447           CPZ
15   chr4    8576141        8864096  NM_001306142          HMX1
16   chr4    8576141        8864096     NM_080819         GPR78
18   chr7    8900871       10222226     NR_002790          PER4
19   chr7  110765270      110973937  NM_001099658         LRRN3
20   chr7  110765270      110973937  NM_001244606        IMMP2L
22   chr9   67124770       67529565     NR_002817        AQP7P1
23   chr9   67124770       67529565     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0    chr1  143668563      143885017  NM_001123068         PPIAL4G
1    chr1  143668563      143885017     NR_104014       LINC01138
2    chr1  143668563      143885017     NR_106967         MIR6077
3    chr1  143668563      143885017     NR_111930    LOC100132057
4   chr15   43962428       44114017  NM_001018108           SERF2
8   chr15   43962428       44114017  NM_001199885            HYPK
9   chr15   43962428       44114017  NM_001258031         SERINC4
10  chr15   43962428       44114017  NM_001321927          CKMT1A
13  chr15   43962428       44114017     NM_005313           PDIA3
14  chr15   43962428       44114017     NM_005926           MFAP1
15  chr15   43962428       44114017     NM_025165            ELL3
16  chr15   43962428       44114017     NR_002318      CATSPER2P1
17  chr15   43962428       44114017     NR_031695         MIR1282
18  chr15   43962428       44114017     NR_037673  SERF2-C15ORF63
20  chr22   17241708       17650573  NM_001037814            GAB4
21  chr22   17241708       17650573  NM_001163079           CECR6
22  chr22   17241708       17650573  NM_001289905          IL17RA
23  chr22   17241708       17650573     NM_017829           CECR5
26  chr22   17241708       17650573     NM_175878            XKR3
27  chr22   17241708       17650573     NR_003607         HSFY1P1
28  chr22   17241708       17650573     NR_015352           CECR7
29  chr22   17241708       17650573     NR_024482       CECR5-AS1
30  chr22   17241708       17650573     NR_103793    LOC100996342,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   43917343       44081429  NM_001199877         SERF2
1   chr15   43917343       44081429  NM_001282309      CATSPER2
2   chr15   43917343       44081429  NM_001321927        CKMT1A
5   chr15   43917343       44081429     NM_005313         PDIA3
6   chr15   43917343       44081429     NM_025165          ELL3
8   chr15   43917343       44081429     NR_002318    CATSPER2P1
11  chr19   33125253       33248479  NM_001105570        NUDT19
12  chr19   33125253       33248479  NM_001110822        TDRD12
13  chr19   33125253       33248479     NM_032139       ANKRD27
14  chr19   33125253       33248479     NM_207391        RGS9BP
15  chr22   17248508       17389329     NM_175878          XKR3
16  chr22   17248508       17389329     NR_003607       HSFY1P1
17   chr4   81912677       83323873     NM_001201          BMP3
18   chr4   81912677       83323873  NM_001282483         PRKG2
20   chr4   81912677       83323873     NM_002138        HNRNPD
21   chr4   81912677       83323873     NM_152545      RASGEF1B
22   chr4   81912677       83323873     NR_125908  LOC101928942
23   chr7   75378072       75486787     NM_002991         CCL24
24   chr7   75378072       75486787     NM_006072         CCL26
25   chr8   97780825       97910560     NM_016134           CPQ,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   15017499       15422595  NM_001270767          NTAN1
1   chr16   15017499       15422595  NM_001285445         PDXDC1
6   chr16   15017499       15422595  NM_001301064           RRN3
8   chr16   15017499       15422595     NM_006985         NPIPA1
9   chr16   15017499       15422595     NR_037466      MIR3180-4
10  chr16   15017499       15422595     NR_103772   LOC100288162
11  chr16   15017499       15422595     NR_106775      MIR6511B1
12  chr16   15017499       15422595     NR_106965      MIR6511B2
13  chr16   15017499       15422595     NR_106970      MIR6511A3
14  chr16   15017499       15422595     NR_107060      MIR6770-2
15  chr16   15017499       15422595     NR_123721  PKD1P6-NPIPP1
17  chr16   15017499       15422595     NR_125434   LOC100505915
18  chr16   29499801       29772139  NM_001030288            SPN
19  chr16   29499801       29772139  NM_001318249           QPRT
21  chr16   29499801       29772139     NM_175900       C16orf54
22  chr16   29499801       29772139     NR_049833      MIR3680-2
23  chr16   29499801       29772139     NR_135305         SMG1P2
25   chr2   97147136       97302838  NM_001115016         KANSL3
26   chr2   97147136       97302838  NM_001285485         NEURL3
27   chr2   97147136       97302838  NM_001319085         ARID5A
31   chr2   97147136       97302838     NR_135564   LOC105373496
32   chr3    2278740        2386488  NM_001206955          CNTN4
34   chr3  172101103      172246176  NM_001135095         FNDC3B
35   chr3  172101103      172246176  NM_001190942        TNFSF10
37   chr3  172101103      172246176     NM_004122           GHSR
40   chr9   39100040       39510465  NM_001085452      SPATA31A1
41   chr9   39100040       39510465     NM_033655        CNTNAP3
42   chr9   39100040       39510465     NR_003528        ZNF658B
43   chr9   39100040       39510465     NR_026803        FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21776298       21932687  NM_001163380     RAB2B
1   chr14   21776298       21932687  NM_001170629      CHD8
2   chr14   21776298       21932687     NM_007192   SUPT16H
3   chr14   21776298       21932687     NM_020366   RPGRIP1
6   chr14   21776298       21932687     NR_002916    SNORD8
7   chr14   21776298       21932687     NR_003029    SNORD9
8   chr16   83044364       83180128  NM_001220488     CDH13
10   chr7  110648200      110774765  NM_001099658     LRRN3
11   chr7  110648200      110774765  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143614546      145140245  NM_001002810       PDE4DIP
3   chr1  143614546      145140245  NM_001123068       PPIAL4G
4   chr1  143614546      145140245  NM_001135789       PPIAL4C
9   chr1  143614546      145140245  NM_001277444         NBPF9
10  chr1  143614546      145140245  NM_001278267        NBPF20
11  chr1  143614546      145140245  NM_001287385        FAM72C
12  chr1  143614546      145140245  NM_001345942        FAM72D
15  chr1  143614546      145140245     NM_004892        SEC22B
18  chr1  143614546      145140245     NR_003242        PFN1P2
19  chr1  143614546      145140245     NR_024511     LINC00623
21  chr1  143614546      145140245     NR_102405         NBPF8
22  chr1  143614546      145140245     NR_104014     LINC01138
23  chr1  143614546      145140245     NR_106967       MIR6077
24  chr1  143614546      145140245     NR_111930  LOC100132057
25  chr1  143614546      145140245     NR_111953     LINC00869
27  chr2   35651650       35923129     NR_039629      MIR548AD
28  chr2   36318725       36596850     NM_016441         CRIM1
29  chr2   36318725       36596850     NR_037631  LOC100288911
30  chr4  169227597      169358523  NM_001012967        DDX60L
32  chr4  169227597      169358523     NM_017631         DDX60
33  chr8    7861360        8082892     NR_027424        FAM66E
34  chr8    7861360        8082892     NR_031689      MIR548I3
35  chr9   28211346       28350930  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21835474       22091935  NM_001005465        OR10G3
1   chr14   21835474       22091935  NM_001163380         RAB2B
2   chr14   21835474       22091935  NM_001170629          CHD8
3   chr14   21835474       22091935  NM_001303523          TOX4
4   chr14   21835474       22091935     NM_007192       SUPT16H
5   chr14   21835474       22091935     NM_019852        METTL3
8   chr14   21835474       22091935     NR_002916        SNORD8
9   chr14   21835474       22091935     NR_003029        SNORD9
10  chr14   21835474       22091935     NR_111966         SALL2
12   chr9  137596423      137745150     NM_000093        COL5A1
13   chr9  137596423      137745150     NR_037460      MIR3689A
14   chr9  137596423      137745150     NR_037469      MIR3689B
15   chr9  137596423      137745150     NR_039691      MIR3689C
16   chr9  137596423      137745150     NR_039693     MIR3689D1
17   chr9  137596423      137745150     NR_039694     MIR3689D2
18   chr9  137596423      137745150     NR_039695      MIR3689E
19   chr9  137596423      137745150     NR_039696      MIR3689F
20   chr9  137596423      137745150     NR_103451  LOC101448202,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27645560       27773741  NM_001034842        PTCHD3
1   chr15   28740363       29141561  NM_001282468       GOLGA8M
2   chr15   28740363       29141561     NR_026589       WHAMMP2
3   chr15   28740363       29141561     NR_033351       GOLGA8F
4   chr15   28740363       29141561     NR_033353       GOLGA8G
5   chr15   28740363       29141561     NR_036443       HERC2P9
6   chr15   28740363       29141561     NR_036475  LOC100289656
7   chr15   28740363       29141561     NR_037599     PDCD6IPP2
8   chr15   28740363       29141561     NR_047567     GOLGA6L7P
9    chr3   50355207       50532180  NM_001206957        RASSF1
10   chr3   50355207       50532180  NM_001291101      CACNA2D2
11   chr3   50355207       50532180  NM_001291284      CYB561D2
12   chr3   50355207       50532180  NM_001308379       ZMYND10
13   chr3   50355207       50532180     NM_003773         HYAL2
15   chr3   50355207       50532180     NM_006545         NPRL2
16   chr3   50355207       50532180     NM_007024       TMEM115
17   chr3   50355207       50532180     NM_007275         TUSC2
20   chr3   50355207       50532180     NR_109831    RASSF1-AS1
23   chr3  131183994      132218945     NM_001099          ACPP
25   chr3  131183994      132218945  NM_001289112         CPNE4
26   chr3  131183994      132218945  NM_001329126       DNAJC13
27   chr3  131183994      132218945     NM_007208         MRPL3
31   chr3  131183994      132218945     NR_002985       SNORA58
32   chr3  131183994      132218945     NR_049890       MIR5704
33   chr7  110578767      110999919  NM_001099658         LRRN3
34   chr7  110578767      110999919  NM_001244606        IMMP2L
36   chr7  110603576      110733205  NM_001099658         LRRN3
37   chr7  110603576      110733205  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   61727471       61869542  NM_001017970       TMEM30B
1   chr14   61727471       61869542     NM_006255         PRKCH
2   chr16   18273878       19595233  NM_001004060         NOMO2
3   chr16   18273878       19595233     NM_001019        RPS15A
4   chr16   18273878       19595233  NM_001105249          TMC5
5   chr16   18273878       19595233  NM_001160364          TMC7
6   chr16   18273878       19595233  NM_001190983          COQ7
7   chr16   18273878       19595233  NM_001199022        CCP110
8   chr16   18273878       19595233  NM_001256720       CLEC19A
10  chr16   18273878       19595233  NM_001282511        NPIPA8
12  chr16   18273878       19595233  NM_001308157         SYT17
14  chr16   18273878       19595233  NM_001313858       ARL6IP1
15  chr16   18273878       19595233  NM_001324066          GDE1
18  chr16   18273878       19595233     NM_015092          SMG1
23  chr16   18273878       19595233     NM_020314      C16orf62
25  chr16   18273878       19595233     NR_003569       ABCC6P1
26  chr16   18273878       19595233     NR_028028      ITPRIPL2
27  chr16   18273878       19595233     NR_036140     MIR3179-1
28  chr16   18273878       19595233     NR_036142     MIR3180-2
29  chr16   18273878       19595233     NR_036144     MIR3180-3
30  chr16   18273878       19595233     NR_037442     MIR3670-1
31  chr16   18273878       19595233     NR_103772  LOC100288162
32  chr16   18273878       19595233     NR_106971     MIR6511A4
33  chr16   18273878       19595233     NR_107060     MIR6770-2
34  chr16   18273878       19595233     NR_119379  LOC102723385
36  chr21   30110923       30269401     NM_013240        N6AMT1
38   chr7   10773212       10996011     NM_002489        NDUFA4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21943423       22044549  NM_001005465     OR10G3
1   chr14   21943423       22044549  NM_001163380      RAB2B
2   chr14   21943423       22044549  NM_001303523       TOX4
3   chr14   21943423       22044549     NM_019852     METTL3
5   chr14   21943423       22044549     NR_111966      SALL2
7    chr2   52301498       52457437     NR_135237  LOC730100
8    chr5  109849575      110071107  NM_001039763    TMEM232
9    chr5  109849575      110071107     NR_031644   MIR548F3
10   chr7   19693047       19903936  NM_001002926    TWISTNB
11   chr7   19693047       19903936     NM_152774    TMEM196
12   chr7   19693047       19903936     NR_036101    MIR3146
13   chr7  133258825      133364444     NM_021807      EXOC4,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  142553938      144084544  NM_001123068       PPIAL4G
1   chr1  142553938      144084544  NM_001287385        FAM72C
2   chr1  142553938      144084544  NM_001345942        FAM72D
6   chr1  142553938      144084544     NR_046228   ANKRD20A12P
7   chr1  142553938      144084544     NR_104014     LINC01138
8   chr1  142553938      144084544     NR_106967       MIR6077
9   chr1  142553938      144084544     NR_110761  LOC102723769
10  chr1  142553938      144084544     NR_111930  LOC100132057
12  chr5     149865         281866  NM_001080478       LRRC14B
13  chr5     149865         281866     NM_004168          SDHA
14  chr5     149865         281866     NM_013232         PDCD6
15  chr5     149865         281866     NM_052909      PLEKHG4B
16  chr5     149865         281866     NM_145265       CCDC127
18  chr5     149865         281866     NR_104613         HRAT5,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  107968473      108223442  NM_001079874       VAV3
1    chr1  107968473      108223442  NM_001113228      NTNG1
5   chr14   21843722       22067027  NM_001005465     OR10G3
6   chr14   21843722       22067027  NM_001163380      RAB2B
7   chr14   21843722       22067027  NM_001170629       CHD8
8   chr14   21843722       22067027  NM_001303523       TOX4
9   chr14   21843722       22067027     NM_007192    SUPT16H
10  chr14   21843722       22067027     NM_019852     METTL3
13  chr14   21843722       22067027     NR_002916     SNORD8
14  chr14   21843722       22067027     NR_003029     SNORD9
15  chr14   21843722       22067027     NR_111966      SALL2
17   chr2   39681490       39814288     NR_037875  LOC728730
18   chr3  111625480      111828285  NM_001008273     TAGLN3
19   chr3  111625480      111828285  NM_001134437     PHLDB2
21   chr3  111625480      111828285  NM_001171747    C3orf52
22   chr3  111625480      111828285  NM_001272069     ABHD10
26   chr3  111625480      111828285     NR_026734    TMPRSS7
27   chr7    6692169        6829568  NM_001099697   RSPH10B2
28   chr7    6692169        6829568  NM_001278559     ZNF316
29   chr7    6692169        6829568     NM_006956      ZNF12
30   chr7    6692169        6829568     NR_002217     PMS2CL,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr10   81467710       81640879  NM_001278495      NUTM2B
1  chr10   81467710       81640879     NR_029407   LOC642361
2  chr10   81467710       81640879     NR_120611  NUTM2B-AS1
5  chr20   40683349       40793076     NM_133170       PTPRT
6   chr5   23980904       24228654     NR_131245     C5orf17,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17268064       18008185  NM_001037814          GAB4
1   chr22   17268064       18008185  NM_001163079         CECR6
2   chr22   17268064       18008185  NM_001282227         CECR1
4   chr22   17268064       18008185  NM_001289905        IL17RA
5   chr22   17268064       18008185  NM_001290046         CECR2
7   chr22   17268064       18008185     NM_017829         CECR5
10  chr22   17268064       18008185     NM_175878          XKR3
12  chr22   17268064       18008185     NR_003607       HSFY1P1
13  chr22   17268064       18008185     NR_015352         CECR7
14  chr22   17268064       18008185     NR_024482     CECR5-AS1
15  chr22   17268064       18008185     NR_038398         CECR3
16  chr22   17268064       18008185     NR_103793  LOC100996342
17   chr4  190378230      190581059     NR_121679     LINC01262
18   chr9   28468623       28804165  NM_001258282        LINGO2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143757992      144051079  NM_001123068       PPIAL4G
1   chr1  143757992      144051079  NM_001287385        FAM72C
2   chr1  143757992      144051079  NM_001345942        FAM72D
7   chr7   64022987       64311896  NM_001130022        ZNF680
8   chr7   64022987       64311896  NM_001160183        ZNF138
9   chr7   64022987       64311896  NM_001282360        ZNF107
11  chr7   64022987       64311896     NR_033245     LOC641746
13  chr7   64022987       64311896     NR_077227  LOC100128885
15  chr7   64022987       64311896     NR_106898       MIR6839
16  chr8  138030736      140580656     NM_015912       FAM135B
17  chr8  138030736      140580656     NM_152888       COL22A1
18  chr8  138030736      140580656     NR_125428  LOC101927915,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr20   14784234       14925694  NM_080676      MACROD2
1  chr20   14784234       14925694  NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102404187      102609262     NR_110211         OLFM3
1    chr1  145118818      145476977  NM_001039888      ANKRD34A
2    chr1  145118818      145476977  NM_001277444         NBPF9
3    chr1  145118818      145476977  NM_001278267        NBPF20
4    chr1  145118818      145476977  NM_001302371        NBPF10
5    chr1  145118818      145476977  NM_001313972         TXNIP
7    chr1  145118818      145476977     NM_032305       POLR3GL
8    chr1  145118818      145476977     NM_145277          HFE2
9    chr1  145118818      145476977     NM_203458      NOTCH2NL
10   chr1  145118818      145476977     NR_104217       NBPF25P
11   chr1  145118818      145476977     NR_125967  LOC101928979
12  chr14   21933457       22190926  NM_001001912         OR4E2
13  chr14   21933457       22190926  NM_001005465        OR10G3
14  chr14   21933457       22190926  NM_001005466        OR10G2
15  chr14   21933457       22190926  NM_001163380         RAB2B
16  chr14   21933457       22190926  NM_001303523          TOX4
17  chr14   21933457       22190926  NM_001317107         OR4E1
18  chr14   21933457       22190926     NM_019852        METTL3
20  chr14   21933457       22190926     NR_111966         SALL2
22  chr15   78326432       78676902  NM_001101404         SH2D7
23  chr15   78326432       78676902  NM_001130182        DNAJA4
25  chr15   78326432       78676902  NM_001199377        ACSBG1
26  chr15   78326432       78676902  NM_001301224          CIB2
27  chr15   78326432       78676902  NM_001303247         WDR61
28  chr15   78326432       78676902     NM_004378        CRABP1
29  chr15   78326432       78676902     NM_005530         IDH3A
30  chr15   78326432       78676902     NM_015079       TBC1D2B
32   chr4  121601373      121703242     NM_018699         PRDM5
33   chr5  106826982      106955079     NM_001962         EFNA5,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   81524907       81814242     NM_003019        SFTPD
1   chr10   81524907       81814242     NR_002724        MBL1P
2   chr10   81524907       81814242     NR_027431  TMEM254-AS1
3   chr10   81524907       81814242     NR_029407    LOC642361
4   chr10   81524907       81814242     NR_033857      BMS1P21
5   chr10   81524907       81814242     NR_120611   NUTM2B-AS1
8   chr15   28492292       28649433     NM_004667        HERC2
9   chr15   28492292       28649433     NR_033351      GOLGA8F
10  chr15   28492292       28649433     NR_033353      GOLGA8G
11  chr22   19041836       19815913     NM_000407        GP1BB
12  chr22   19041836       19815913  NM_001009939        SEPT5
13  chr22   19041836       19815913  NM_001035247        UFD1L
14  chr22   19041836       19815913  NM_001166242     C22orf39
15  chr22   19041836       19815913  NM_001178010        CDC45
16  chr22   19041836       19815913  NM_001184781        DGCR2
17  chr22   19041836       19815913  NM_001256534      SLC25A1
18  chr22   19041836       19815913  NM_001318151       MRPL40
20  chr22   19041836       19815913     NM_001835       CLTCL1
22  chr22   19041836       19815913     NM_003277        CLDN5
23  chr22   19041836       19815913     NM_003325         HIRA
25  chr22   19041836       19815913     NM_005315         GSC2
27  chr22   19041836       19815913     NM_005992         TBX1
28  chr22   19041836       19815913     NM_022719       DGCR14
29  chr22   19041836       19815913     NM_053004        GNB1L
30  chr22   19041836       19815913     NM_053006        TSSK2
34  chr22   19041836       19815913     NR_024381    LINC00895
35  chr22   19041836       19815913     NR_037611  SEPT5-GP1BB
37  chr22   19041836       19815913     NR_103767    LINC01311,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21883894       22353571  NM_001001912         OR4E2
1   chr14   21883894       22353571  NM_001005465        OR10G3
2   chr14   21883894       22353571  NM_001005466        OR10G2
3   chr14   21883894       22353571  NM_001163380         RAB2B
4   chr14   21883894       22353571  NM_001170629          CHD8
5   chr14   21883894       22353571  NM_001303523          TOX4
6   chr14   21883894       22353571  NM_001317107         OR4E1
7   chr14   21883894       22353571     NM_019852        METTL3
10  chr14   21883894       22353571     NR_111966         SALL2
12   chr7   77718847       77833465     NM_012301         MAGI2
13   chr8  137163726      139637174     NM_015912       FAM135B
14   chr8  137163726      139637174     NM_152888       COL22A1
15   chr8  137163726      139637174     NR_125428  LOC101927915,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67940245       68088767  NM_001127384    CTNNA3
2   chr11   83519944       83620513  NM_001142699      DLG2
6   chr14   21815243       21972098  NM_001163380     RAB2B
7   chr14   21815243       21972098  NM_001170629      CHD8
8   chr14   21815243       21972098  NM_001303523      TOX4
9   chr14   21815243       21972098     NM_007192   SUPT16H
10  chr14   21815243       21972098     NM_019852    METTL3
11  chr14   21815243       21972098     NM_020366   RPGRIP1
14  chr14   21815243       21972098     NR_002916    SNORD8
15  chr14   21815243       21972098     NR_003029    SNORD9
16  chr14   26678346       27029338     NM_002515     NOVA1
18  chr16   10547582       10647741  NM_001256160   ATF7IP2
19  chr16   10547582       10647741     NM_001424      EMP2
21   chr2   75882034       76188966  NM_001201334     GCFC2
24   chr2   75882034       76188966     NM_014763    MRPL19
25   chr3   60286305       60400684  NM_001320899      FHIT
26   chr7  110662038      110774649  NM_001099658     LRRN3
27   chr7  110662038      110774649  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   21778195       21898589  NM_001170629          CHD8
1  chr14   21778195       21898589     NM_007192       SUPT16H
2  chr14   21778195       21898589     NM_020366       RPGRIP1
4  chr14   21778195       21898589     NR_002916        SNORD8
5  chr14   21778195       21898589     NR_003029        SNORD9
6  chr18   67106483       67310681     NM_152721          DOK6
7  chr18   67106483       67310681     NR_134579  LOC105372179
8   chr4   69207867       69362563  NM_001031732        YTHDC1
9   chr4   69207867       69362563     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21812722       21920953  NM_001170629          CHD8
1   chr14   21812722       21920953     NM_007192       SUPT16H
2   chr14   21812722       21920953     NM_020366       RPGRIP1
4   chr14   21812722       21920953     NR_002916        SNORD8
5   chr14   21812722       21920953     NR_003029        SNORD9
6   chr22   19005927       20409699     NM_000407         GP1BB
7   chr22   19005927       20409699     NM_000754          COMT
8   chr22   19005927       20409699  NM_001009939         SEPT5
9   chr22   19005927       20409699  NM_001035247         UFD1L
12  chr22   19005927       20409699  NM_001166242      C22orf39
13  chr22   19005927       20409699  NM_001178010         CDC45
14  chr22   19005927       20409699  NM_001184781         DGCR2
15  chr22   19005927       20409699  NM_001190326         DGCR8
16  chr22   19005927       20409699  NM_001242313      TMEM191B
17  chr22   19005927       20409699  NM_001243537       CCDC188
18  chr22   19005927       20409699  NM_001256534       SLC25A1
19  chr22   19005927       20409699  NM_001278639        RANBP1
22  chr22   19005927       20409699  NM_001282512        TXNRD2
23  chr22   19005927       20409699  NM_001283116        TANGO2
24  chr22   19005927       20409699  NM_001318151        MRPL40
28  chr22   19005927       20409699     NM_001670         ARVCF
29  chr22   19005927       20409699     NM_001835        CLTCL1
31  chr22   19005927       20409699     NM_003277         CLDN5
32  chr22   19005927       20409699     NM_003325          HIRA
34  chr22   19005927       20409699     NM_005315          GSC2
36  chr22   19005927       20409699     NM_005992          TBX1
39  chr22   19005927       20409699     NM_013373        ZDHHC8
40  chr22   19005927       20409699     NM_022719        DGCR14
41  chr22   19005927       20409699     NM_022727        TRMT2A
42  chr22   19005927       20409699     NM_023004         RTN4R
43  chr22   19005927       20409699     NM_024627      C22orf29
44  chr22   19005927       20409699     NM_033257        DGCR6L
45  chr22   19005927       20409699     NM_053004         GNB1L
46  chr22   19005927       20409699     NM_053006         TSSK2
50  chr22   19005927       20409699     NR_003563       PI4KAP1
51  chr22   19005927       20409699     NR_024157        DGCR11
52  chr22   19005927       20409699     NR_024159         DGCR9
53  chr22   19005927       20409699     NR_024381     LINC00895
54  chr22   19005927       20409699     NR_026651        DGCR10
55  chr22   19005927       20409699     NR_026919     LINC00896
56  chr22   19005927       20409699     NR_029706        MIR185
57  chr22   19005927       20409699     NR_031618       MIR1286
58  chr22   19005927       20409699     NR_031706       MIR1306
59  chr22   19005927       20409699     NR_037412       MIR3618
60  chr22   19005927       20409699     NR_037611   SEPT5-GP1BB
62  chr22   19005927       20409699     NR_038460     LOC284865
63  chr22   19005927       20409699     NR_039918       MIR4761
64  chr22   19005927       20409699     NR_103767     LINC01311
65  chr22   19005927       20409699     NR_106874       MIR6816
66  chr22   19005927       20409699     NR_110533         DGCR5
67  chr22   19005927       20409699     NR_136560       FAM230A
68  chr22   19005927       20409699     NR_136572  LOC101927859
69   chr5  109658432      109783192  NM_001039763       TMEM232,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83463266       83665920  NM_001142699          DLG2
4   chr14   21797270       21943172  NM_001163380         RAB2B
5   chr14   21797270       21943172  NM_001170629          CHD8
6   chr14   21797270       21943172     NM_007192       SUPT16H
7   chr14   21797270       21943172     NM_020366       RPGRIP1
10  chr14   21797270       21943172     NR_002916        SNORD8
11  chr14   21797270       21943172     NR_003029        SNORD9
12  chr16   21557023       21687669  NM_001077180        METTL9
14  chr16   21557023       21687669     NM_005849         IGSF6
15  chr16   21557023       21687669     NR_110930  LOC101927814
16   chr3  131164579      131601076  NM_001289112         CPNE4
17   chr3  131164579      131601076     NM_007208         MRPL3
20   chr3  131164579      131601076     NR_002985       SNORA58
21   chr4   93801160       94135148     NM_001510         GRID2
22   chr6  120227945      120558585     NR_036098       MIR3144
23   chr7   79051455       79317004     NM_012301         MAGI2
24   chr7   79051455       79317004     NR_038343     MAGI2-AS3
27   chr7  110518823      110876982  NM_001099658         LRRN3
28   chr7  110518823      110876982  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18294729       18775976  NM_001004060         NOMO2
1  chr16   18294729       18775976  NM_001282511        NPIPA8
2  chr16   18294729       18775976     NR_003569       ABCC6P1
3  chr16   18294729       18775976     NR_036140     MIR3179-1
4  chr16   18294729       18775976     NR_036142     MIR3180-2
5  chr16   18294729       18775976     NR_036144     MIR3180-3
6  chr16   18294729       18775976     NR_037442     MIR3670-1
7  chr16   18294729       18775976     NR_103772  LOC100288162
8  chr16   18294729       18775976     NR_106971     MIR6511A4
9  chr16   18294729       18775976     NR_107060     MIR6770-2,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr14   47780973       51215140     NM_001001       RPL36AL
1    chr14   47780973       51215140  NM_001030001         RPS29
3    chr14   47780973       51215140  NM_001040662        VCPKMT
4    chr14   47780973       51215140  NM_001113498         MDGA2
5    chr14   47780973       51215140  NM_001127713          ATL1
6    chr14   47780973       51215140  NM_001197330         POLE2
8    chr14   47780973       51215140  NM_001282236         CDKL1
9    chr14   47780973       51215140  NM_001301732          NEMF
10   chr14   47780973       51215140     NM_001663          ARF6
11   chr14   47780973       51215140     NM_002408         MGAT2
13   chr14   47780973       51215140     NM_006575        MAP4K5
14   chr14   47780973       51215140     NM_006939          SOS2
15   chr14   47780973       51215140     NM_014315        KLHDC2
16   chr14   47780973       51215140     NM_015684         ATP5S
17   chr14   47780973       51215140     NM_016350           NIN
18   chr14   47780973       51215140     NM_018139        DNAAF2
20   chr14   47780973       51215140     NM_021818          SAV1
21   chr14   47780973       51215140     NM_024884        L2HGDH
22   chr14   47780973       51215140     NM_172193        KLHDC1
27   chr14   47780973       51215140     NR_037503       MIR548Y
28   chr14   47780973       51215140     NR_037793          LRR1
29   chr14   47780973       51215140     NR_039726       MIR4504
30   chr14   47780973       51215140     NR_039996     LINC00648
32   chr14   47780973       51215140     NR_106724       MIR6076
33   chr14   47780973       51215140     NR_126496     LINC01588
38   chr14   47780973       51215140     NR_131171     LINC01599
39    chr2   26642656       26814421  NM_001029881          CIB4
40    chr2   26642656       26814421  NM_001105519       C2orf70
41    chr2   26642656       26814421     NM_004802          OTOF
42    chr2   26642656       26814421     NM_145038          DRC1
..     ...        ...            ...           ...           ...
133  chr22   17175237       20609404     NR_031618       MIR1286
134  chr22   17175237       20609404     NR_031706       MIR1306
135  chr22   17175237       20609404     NR_036168     MIR3198-1
136  chr22   17175237       20609404     NR_037412       MIR3618
137  chr22   17175237       20609404     NR_037611   SEPT5-GP1BB
139  chr22   17175237       20609404     NR_038398         CECR3
140  chr22   17175237       20609404     NR_038460     LOC284865
141  chr22   17175237       20609404     NR_039918       MIR4761
143  chr22   17175237       20609404     NR_103718     LINC00528
144  chr22   17175237       20609404     NR_103767     LINC01311
145  chr22   17175237       20609404     NR_103793  LOC100996342
146  chr22   17175237       20609404     NR_106874       MIR6816
148  chr22   17175237       20609404     NR_134584  LOC101929350
149  chr22   17175237       20609404     NR_135922  LOC102725072
150  chr22   17175237       20609404     NR_136560       FAM230A
151  chr22   17175237       20609404     NR_136561     LOC642643
152  chr22   17175237       20609404     NR_136570  LOC100996415
153  chr22   17175237       20609404     NR_136571  LOC100996432
154  chr22   17175237       20609404     NR_136572  LOC101927859
155  chr22   17175237       20609404     NR_136574  LOC105379550
156   chr4    8965134        9369352  NM_001242326      USP17L25
164   chr4    8965134        9369352  NM_001256852      USP17L10
165   chr4    8965134        9369352  NM_001256853      USP17L12
167   chr4    8965134        9369352  NM_001256854      USP17L11
170   chr4    8965134        9369352  NM_001256855      USP17L13
171   chr4    8965134        9369352  NM_001256857      USP17L17
172   chr4    8965134        9369352  NM_001256860      USP17L19
173   chr4    8965134        9369352  NM_001256861      USP17L20
174   chr4    8965134        9369352  NM_001256894      USP17L15
175   chr4    8965134        9369352     NR_046416      USP17L9P

[122 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108379633      108557775     NM_006113          VAV3
1    chr1  108379633      108557775     NR_046653      VAV3-AS1
2    chr1  108379633      108557775     NR_107006       MIR7852
3   chr12   71434200       72060327  NM_001277227          LGR5
4   chr12   71434200       72060327     NM_004616        TSPAN8
5   chr12   71434200       72060327     NM_031435         THAP2
6   chr12   71434200       72060327     NM_144982        ZFC3H1
7   chr15   28803635       28930702     NR_036443       HERC2P9
8   chr16   16273572       16647275  NM_001004067         NOMO3
9   chr16   16273572       16647275  NM_001079528         ABCC6
11  chr16   16273572       16647275  NM_001282511        NPIPA8
12  chr16   16273572       16647275     NR_036140     MIR3179-1
13  chr16   16273572       16647275     NR_036141     MIR3180-1
14  chr16   16273572       16647275     NR_036142     MIR3180-2
15  chr16   16273572       16647275     NR_036447        PKD1P1
16  chr16   16273572       16647275     NR_103772  LOC100288162
17  chr16   16273572       16647275     NR_106766     MIR6511A1
18  chr16   16273572       16647275     NR_106971     MIR6511A4
19  chr16   16273572       16647275     NR_107060     MIR6770-2
20  chr16   16273572       16647275     NR_128713     MIR3670-4
21  chr16   78800603       79081363     NM_016373          WWOX
22   chr5   31204564       31492281     NM_004932          CDH6
23   chr5   31204564       31492281     NM_013235        DROSHA,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67275820       67386021     NM_000852     GSTP1
1   chr11   67275820       67386021  NM_001166102    NDUFV1
2   chr11   67275820       67386021  NM_001318496     CABP2
3   chr11   67275820       67386021     NM_005851   CDK2AP2
4   chr11   67275820       67386021     NR_033791    DOC2GP
5   chr11   67275820       67386021     NR_130935  C11orf72
6   chr14   21764574       21896366  NM_001170629      CHD8
7   chr14   21764574       21896366     NM_007192   SUPT16H
8   chr14   21764574       21896366     NM_020366   RPGRIP1
10  chr14   21764574       21896366     NR_002916    SNORD8
11  chr14   21764574       21896366     NR_003029    SNORD9,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   51175403       51334745  NM_001330079         NRXN1
3   chr2   51175403       51334745     NR_135237     LOC730100
4  chr20   14660534       14815112     NM_080676       MACROD2
5  chr22   17240828       17370890     NM_175878          XKR3
6  chr22   17240828       17370890     NR_003607       HSFY1P1
7   chr5   98752477       98881738     NR_110562  CTD-2151A2.1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143484699      143900688  NM_001123068       PPIAL4G
1  chr1  143484699      143900688  NM_001287385        FAM72C
2  chr1  143484699      143900688  NM_001345942        FAM72D
5  chr1  143484699      143900688     NR_104014     LINC01138
6  chr1  143484699      143900688     NR_106967       MIR6077
7  chr1  143484699      143900688     NR_111930  LOC100132057,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   42055583       42185645  NM_001346175      LRFN5
1   chr15   20639680       21062689  NM_001145004   GOLGA6L6
2   chr15   20639680       21062689  NM_001277303     POTEB2
3   chr15   20639680       21062689     NM_207355     POTEB3
4   chr15   20639680       21062689     NR_027411   GOLGA8CP
5   chr15   20639680       21062689     NR_027992     NBEAP1
6   chr15   20639680       21062689     NR_036062  MIR3118-2
7   chr15   20639680       21062689     NR_036432    HERC2P3
9   chr16   18308803       18422681  NM_001282511     NPIPA8
10  chr20   14666522       14782117     NM_080676    MACROD2
11  chr22   18970071       19121598  NM_001184781      DGCR2
12  chr22   18970071       19121598     NM_022719     DGCR14
13  chr22   18970071       19121598     NM_053006      TSSK2
14  chr22   18970071       19121598     NR_002733      DGCR5
15  chr22   18970071       19121598     NR_024157     DGCR11
16  chr22   18970071       19121598     NR_024159      DGCR9
17  chr22   18970071       19121598     NR_026651     DGCR10
19   chr6  162765847      163222056  NM_001080378      PACRG
21   chr6  162765847      163222056     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   65474149       65601860     NM_003613          CILP
1   chr15   65474149       65601860     NM_006660          CLPX
2   chr15   65474149       65601860     NM_017851        PARP16
3    chr4    8993233        9498431  NM_001040448       DEFB131
4    chr4    8993233        9498431  NM_001242326      USP17L25
12   chr4    8993233        9498431  NM_001256852      USP17L10
13   chr4    8993233        9498431  NM_001256853      USP17L12
15   chr4    8993233        9498431  NM_001256854      USP17L11
18   chr4    8993233        9498431  NM_001256855      USP17L13
19   chr4    8993233        9498431  NM_001256857      USP17L17
20   chr4    8993233        9498431  NM_001256860      USP17L19
21   chr4    8993233        9498431  NM_001256861      USP17L20
22   chr4    8993233        9498431  NM_001256894      USP17L15
23   chr4    8993233        9498431     NR_027279      USP17L6P
24   chr4    8993233        9498431     NR_046416      USP17L9P
25   chr5   23822938       24513551  NM_001317222         CDH10
27   chr5   23822938       24513551     NR_131245       C5orf17
28   chr8    4249993        4368033     NM_033225         CSMD1
29   chr9   72264712       72662779  NM_001010940      C9orf135
30   chr9   72264712       72662779  NM_001099666         PTAR1
31   chr9   72264712       72662779     NM_001163         APBA1
32   chr9   72264712       72662779     NM_153267        MAMDC2
33   chr9   72264712       72662779     NR_038833  C9orf135-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  181430447      181870028     NM_000721       CACNA1E
1   chr12  128586956      128703663     NR_104647  LOC100996679
2   chr12  128586956      128703663     NR_104648  LOC101927694
3   chr13   41331607       41583840  NM_001145353          ELF1
4   chr13   41331607       41583840     NM_005830        MRPS31
5   chr13   41331607       41583840     NM_014252      SLC25A15
7   chr13   41331607       41583840     NR_003365       SUGT1P3
8   chr13   41331607       41583840     NR_030352        MIR621
9   chr13   41331607       41583840     NR_038259       TPTE2P5
10  chr14   21888417       22254441  NM_001001912         OR4E2
11  chr14   21888417       22254441  NM_001005465        OR10G3
12  chr14   21888417       22254441  NM_001005466        OR10G2
13  chr14   21888417       22254441  NM_001163380         RAB2B
14  chr14   21888417       22254441  NM_001170629          CHD8
15  chr14   21888417       22254441  NM_001303523          TOX4
16  chr14   21888417       22254441  NM_001317107         OR4E1
17  chr14   21888417       22254441     NM_019852        METTL3
20  chr14   21888417       22254441     NR_111966         SALL2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21858785       22061300  NM_001005465       OR10G3
1   chr14   21858785       22061300  NM_001163380        RAB2B
2   chr14   21858785       22061300  NM_001170629         CHD8
3   chr14   21858785       22061300  NM_001303523         TOX4
4   chr14   21858785       22061300     NM_019852       METTL3
7   chr14   21858785       22061300     NR_002916       SNORD8
8   chr14   21858785       22061300     NR_003029       SNORD9
9   chr14   21858785       22061300     NR_111966        SALL2
11  chr16   71093567       71277409  NM_001198542        HYDIN
14  chr20   14785513       14946625     NM_080676      MACROD2
15  chr20   14785513       14946625     NR_037841  MACROD2-AS1
17   chr4   69087631       69189361  NM_001031732       YTHDC1
18   chr4   69087631       69189361     NM_182502    TMPRSS11B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12    9451161        9788251     NM_002258         KLRB1
1   chr12    9451161        9788251     NR_024374     LOC642846
2   chr12    9451161        9788251     NR_033399        DDX12P
3   chr12    9451161        9788251     NR_046448     LOC374443
5   chr12    9451161        9788251     NR_120479  LOC101930452
6   chr12    9451161        9788251     NR_120481  LOC101928030
7   chr14   21804651       21912882  NM_001170629          CHD8
8   chr14   21804651       21912882     NM_007192       SUPT16H
9   chr14   21804651       21912882     NM_020366       RPGRIP1
11  chr14   21804651       21912882     NR_002916        SNORD8
12  chr14   21804651       21912882     NR_003029        SNORD9
13  chr17    5591588        5949747     NR_040000     LOC339166
14  chr19    1094172        1415186     NM_000156          GAMT
15  chr19    1094172        1415186     NM_000455         STK11
16  chr19    1094172        1415186  NM_001001975         ATP5D
17  chr19    1094172        1415186  NM_001039848          GPX4
18  chr19    1094172        1415186  NM_001100122         SBNO2
19  chr19    1094172        1415186     NM_001280         CIRBP
22  chr19    1094172        1415186  NM_001316323        POLR2E
23  chr19    1094172        1415186     NM_001405         EFNA2
26  chr19    1094172        1415186     NM_017914      C19orf24
27  chr19    1094172        1415186     NM_024407        NDUFS7
28  chr19    1094172        1415186     NM_032853          MUM1
30  chr19    1094172        1415186     NM_152769         CBARP
31  chr19    1094172        1415186     NM_170711        DAZAP1
32  chr19    1094172        1415186     NM_177401          MIDN
35  chr19    1094172        1415186     NR_027271     CIRBP-AS1
36   chr6  161896884      162057254     NM_013988         PARK2
37   chr6  161896884      162057254     NR_134594  LOC105378098
38   chr7   71435620       71589331  NM_001017440         CALN1
40   chr9   20782243       21155946  NM_001010915         HACD4
42   chr9   20782243       21155946     NM_002176         IFNB1
43   chr9   20782243       21155946     NM_002177         IFNW1
44   chr9   20782243       21155946     NM_017794         FOCAD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143645294      144057036  NM_001123068       PPIAL4G
1    chr1  143645294      144057036  NM_001287385        FAM72C
2    chr1  143645294      144057036  NM_001345942        FAM72D
6    chr1  143645294      144057036     NR_104014     LINC01138
7    chr1  143645294      144057036     NR_106967       MIR6077
8    chr1  143645294      144057036     NR_111930  LOC100132057
10  chr10   81455575       81600210  NM_001278495        NUTM2B
11  chr10   81455575       81600210     NR_029407     LOC642361
12  chr10   81455575       81600210     NR_120611    NUTM2B-AS1
15  chr17   47969543       48174761  NM_001199898          PDK2
18  chr17   47969543       48174761     NM_001934          DLX4
19  chr17   47969543       48174761     NM_002204         ITGA3
21  chr17   47969543       48174761     NM_005220          DLX3
23  chr17   47969543       48174761     NR_038230     LOC284080
24   chr4   71370115       71701383  NM_001037442         RUFY3
25   chr4   71370115       71701383  NM_001098477         GRSF1
27   chr4   71370115       71701383  NM_001286731          AMTN
32   chr4   71370115       71701383     NM_016519          AMBN
33   chr4   71370115       71701383     NM_020368          UTP3
34   chr4   71370115       71701383     NM_031889          ENAM
35   chr4   71370115       71701383     NM_144646        JCHAIN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12800706       13296261  NM_001009611       PRAMEF4
1    chr1   12800706       13296261  NM_001010889       PRAMEF6
2    chr1   12800706       13296261  NM_001010890       PRAMEF9
3    chr1   12800706       13296261  NM_001012276       PRAMEF8
4    chr1   12800706       13296261  NM_001013407       PRAMEF5
5    chr1   12800706       13296261  NM_001013631      HNRNPCL1
6    chr1   12800706       13296261  NM_001080830      PRAMEF12
7    chr1   12800706       13296261  NM_001099850      PRAMEF18
8    chr1   12800706       13296261  NM_001100631      PRAMEF22
9    chr1   12800706       13296261  NM_001136561      HNRNPCL2
10   chr1   12800706       13296261  NM_001146181      HNRNPCL3
11   chr1   12800706       13296261  NM_001146344      PRAMEF11
12   chr1   12800706       13296261  NM_001294139       PRAMEF1
13   chr1   12800706       13296261  NM_001302551      HNRNPCL4
14   chr1   12800706       13296261  NM_001306072      PRAMEF26
15   chr1   12800706       13296261  NM_001310134      PRAMEF25
17   chr1   12800706       13296261     NM_023014       PRAMEF2
18   chr1   12800706       13296261     NM_152290      C1orf158
19   chr1   12800706       13296261     NR_111945     PRAMEF36P
21  chr10   67973575       68377793  NM_001127384        CTNNA3
23  chr14   21828134       21930327  NM_001163380         RAB2B
24  chr14   21828134       21930327  NM_001170629          CHD8
25  chr14   21828134       21930327     NM_007192       SUPT16H
28  chr14   21828134       21930327     NR_002916        SNORD8
29  chr14   21828134       21930327     NR_003029        SNORD9
30  chr14   67460182       67756913  NM_001256550          MPP5
31  chr14   67460182       67756913     NM_020806          GPHN
32  chr14   67460182       67756913     NM_173526        FAM71D
33   chr7    2741605        4412251  NM_001079653          SDK1
34   chr7    2741605        4412251  NM_001282440         GNA12
36   chr7    2741605        4412251  NM_001284355          AMZ1
39   chr7    2741605        4412251  NM_001324281        CARD11
42   chr7    2741605        4412251     NR_126024  LOC100129603
43   chr7    9078776        9870418     NR_002790          PER4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   22417879       23174556     NR_047040     LINC00424
1   chr13   22417879       23174556     NR_103810     LINC00540
2   chr16   21544375       23141165  NM_001077180        METTL9
3   chr16   21544375       23141165  NM_001135865        NPIPB5
4   chr16   21544375       23141165  NM_001161683          OTOA
5   chr16   21544375       23141165  NM_001164579      C16orf52
6   chr16   21544375       23141165  NM_001258033        POLR3E
8   chr16   21544375       23141165  NM_001310148        NPIPB4
9   chr16   21544375       23141165     NM_001802          CDR2
10  chr16   21544375       23141165     NM_003366        UQCRC2
11  chr16   21544375       23141165     NM_005849         IGSF6
12  chr16   21544375       23141165     NM_006043        HS3ST2
13  chr16   21544375       23141165     NM_013302         EEF2K
14  chr16   21544375       23141165     NM_020718         USP31
17  chr16   21544375       23141165     NM_173615         VWA3A
18  chr16   21544375       23141165     NM_173806         PDZD9
19  chr16   21544375       23141165     NR_003370        RRN3P1
20  chr16   21544375       23141165     NR_003676     LOC653786
21  chr16   21544375       23141165     NR_027154        SMG1P1
22  chr16   21544375       23141165     NR_027460        RRN3P3
23  chr16   21544375       23141165     NR_110930  LOC101927814
24  chr16   21544375       23141165     NR_136333       MFSD13B
25   chr2   25503792       25619887  NM_001256304          DTNB
27   chr2   25503792       25619887  NM_001320892        DNMT3A
33   chr2   25503792       25619887     NR_031570       MIR1301,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21938270       22048811  NM_001005465    OR10G3
1   chr14   21938270       22048811  NM_001163380     RAB2B
2   chr14   21938270       22048811  NM_001303523      TOX4
3   chr14   21938270       22048811     NM_019852    METTL3
5   chr14   21938270       22048811     NR_111966     SALL2
7    chr3    3899077        4380821  NM_001243723    SETMAR
9    chr9  116739441      116954628  NM_001318041    ZNF618
10   chr9  116739441      116954628     NM_001633      AMBP
11   chr9  116739441      116954628     NM_032888   COL27A1
12   chr9  116739441      116954628     NM_138424     KIF12,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18088244       19758890  NM_001004060         NOMO2
1   chr16   18088244       19758890  NM_001012991         KNOP1
2   chr16   18088244       19758890     NM_001019        RPS15A
3   chr16   18088244       19758890  NM_001105249          TMC5
4   chr16   18088244       19758890  NM_001160364          TMC7
5   chr16   18088244       19758890  NM_001190983          COQ7
6   chr16   18088244       19758890  NM_001199022        CCP110
7   chr16   18088244       19758890  NM_001256720       CLEC19A
9   chr16   18088244       19758890  NM_001282511        NPIPA8
11  chr16   18088244       19758890  NM_001305121          IQCK
12  chr16   18088244       19758890  NM_001308157         SYT17
14  chr16   18088244       19758890  NM_001313858       ARL6IP1
15  chr16   18088244       19758890  NM_001324066          GDE1
18  chr16   18088244       19758890     NM_015092          SMG1
23  chr16   18088244       19758890     NM_020314      C16orf62
25  chr16   18088244       19758890     NR_003569       ABCC6P1
26  chr16   18088244       19758890     NR_028028      ITPRIPL2
27  chr16   18088244       19758890     NR_036140     MIR3179-1
28  chr16   18088244       19758890     NR_036142     MIR3180-2
29  chr16   18088244       19758890     NR_036144     MIR3180-3
30  chr16   18088244       19758890     NR_037442     MIR3670-1
31  chr16   18088244       19758890     NR_103772  LOC100288162
32  chr16   18088244       19758890     NR_106971     MIR6511A4
33  chr16   18088244       19758890     NR_107060     MIR6770-2
34  chr16   18088244       19758890     NR_119379  LOC102723385
36  chr21   22964423       23156955     NR_038872     LINC00317
37  chr21   22964423       23156955     NR_109958     LINC01425
38   chr3  105565606      105697521  NM_001321786          CBLB
44   chr7  110508888      110616334  NM_001244606        IMMP2L
46   chr9   38981363       39463107  NM_001085452     SPATA31A1
47   chr9   38981363       39463107     NM_033655       CNTNAP3
48   chr9   38981363       39463107     NR_003528       ZNF658B
49   chr9   38981363       39463107     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244997359      246335148  NM_001143943        EFCAB2
1    chr1  244997359      246335148  NM_001167740         SMYD3
3    chr1  244997359      246335148  NM_001312871         COX20
5    chr1  244997359      246335148     NM_004501        HNRNPU
6    chr1  244997359      246335148     NM_018012        KIF26B
10   chr1  244997359      246335148     NR_111907  LOC101928068
11   chr1  244997359      246335148     NR_132782      SNORA100
12  chr11   59384271       59550453  NM_001005324        OR10V1
13  chr11   59384271       59550453  NM_001178040          STX3
14  chr11   59384271       59550453     NM_152716         PATL1
15  chr11   59384271       59550453     NR_045005       OR10V2P
16  chr14   21822652       22036217  NM_001163380         RAB2B
17  chr14   21822652       22036217  NM_001170629          CHD8
18  chr14   21822652       22036217  NM_001303523          TOX4
19  chr14   21822652       22036217     NM_007192       SUPT16H
20  chr14   21822652       22036217     NM_019852        METTL3
23  chr14   21822652       22036217     NR_002916        SNORD8
24  chr14   21822652       22036217     NR_003029        SNORD9
25  chr14   21822652       22036217     NR_111966         SALL2
27  chr20   14645957       15071964     NM_080676       MACROD2
28  chr20   14645957       15071964     NR_037841   MACROD2-AS1
30   chr7   69089203       69267509  NM_001127231         AUTS2
32   chr7  110540015      110702621  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21739386       21874004  NM_001170629       CHD8
1   chr14   21739386       21874004     NM_007192    SUPT16H
2   chr14   21739386       21874004     NM_020366    RPGRIP1
4   chr14   21739386       21874004     NR_002916     SNORD8
5   chr14   21739386       21874004     NR_003029     SNORD9
6   chr16   29720802       29838818  NM_001256269      KIF22
8   chr16   29720802       29838818  NM_001256443      PRRT2
9   chr16   29720802       29838818  NM_001276275        MAZ
11  chr16   29720802       29838818     NM_005115        MVP
12  chr16   29720802       29838818     NM_024516      PAGR1
13  chr16   29720802       29838818     NM_152338       ZG16
14  chr16   29720802       29838818     NM_175900   C16orf54
15   chr3     719169         850139     NR_110118  LINC01266
16   chr4   30708967       30813381  NM_001173523      PCDH7
19   chr6   89486162       89705936  NM_001286428      RNGTT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   97394503       97641991     NM_000110          DPYD
1    chr1   97394503       97641991     NR_046590      DPYD-AS1
2   chr14   21755929       21978142  NM_001163380         RAB2B
3   chr14   21755929       21978142  NM_001170629          CHD8
4   chr14   21755929       21978142  NM_001303523          TOX4
5   chr14   21755929       21978142     NM_007192       SUPT16H
6   chr14   21755929       21978142     NM_019852        METTL3
7   chr14   21755929       21978142     NM_020366       RPGRIP1
10  chr14   21755929       21978142     NR_002916        SNORD8
11  chr14   21755929       21978142     NR_003029        SNORD9
12  chr20   41075541       41611365     NM_133170         PTPRT
13  chr20   41075541       41611365     NR_110004  LOC101927159
14   chr7    8694069        8882866     NM_152745         NXPH1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   64920594       65131491  NM_001004326   SLC22A20
1   chr11   64920594       65131491  NM_001008778      SPDYC
2   chr11   64920594       65131491  NM_001198868      CAPN1
4   chr11   64920594       65131491  NM_001330308       DPF2
5   chr11   64920594       65131491     NM_002689      POLA2
7   chr11   64920594       65131491     NM_006779   CDC42EP2
8   chr11   64920594       65131491     NM_145719      TIGD3
11  chr13   25305716       25406958  NM_001184993      RNF17
12  chr13   88034876       88250951     NR_033829  MIR4500HG
13  chr14   21842829       21996540  NM_001163380      RAB2B
14  chr14   21842829       21996540  NM_001170629       CHD8
15  chr14   21842829       21996540  NM_001303523       TOX4
16  chr14   21842829       21996540     NM_007192    SUPT16H
17  chr14   21842829       21996540     NM_019852     METTL3
20  chr14   21842829       21996540     NR_002916     SNORD8
21  chr14   21842829       21996540     NR_003029     SNORD9
22  chr14   21842829       21996540     NR_111966      SALL2
24  chr15   28714751       28838012     NR_033351    GOLGA8F
25  chr15   28714751       28838012     NR_033353    GOLGA8G
26  chr15   28714751       28838012     NR_039734  MIR4509-3
27   chr4   94116558       94221231     NM_001510      GRID2
28   chr5   99851680       99995287     NM_198507    FAM174A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  185865985      186007445     NM_031935         HMCN1
1   chr14   21933873       22085327  NM_001005465        OR10G3
2   chr14   21933873       22085327  NM_001163380         RAB2B
3   chr14   21933873       22085327  NM_001303523          TOX4
4   chr14   21933873       22085327     NM_019852        METTL3
6   chr14   21933873       22085327     NR_111966         SALL2
8   chr15   28306029       29100217     NM_000275          OCA2
9   chr15   28306029       29100217  NM_001282468       GOLGA8M
11  chr15   28306029       29100217     NM_004667         HERC2
12  chr15   28306029       29100217     NR_026589       WHAMMP2
13  chr15   28306029       29100217     NR_033351       GOLGA8F
15  chr15   28306029       29100217     NR_033353       GOLGA8G
17  chr15   28306029       29100217     NR_036443       HERC2P9
18  chr15   28306029       29100217     NR_036475  LOC100289656
19  chr15   28306029       29100217     NR_037599     PDCD6IPP2
20  chr15   28306029       29100217     NR_039734     MIR4509-3
22  chr15   28306029       29100217     NR_047567     GOLGA6L7P
23  chr19   47808890       47920340  NM_001009813         MEIS3
24  chr19   47808890       47920340  NM_001271749         C5AR2
28  chr19   47808890       47920340     NM_001736         C5AR1
29  chr19   47808890       47920340     NM_014681         DHX34
31  chr20   14512901       14763637     NM_080676       MACROD2
32  chr20   14512901       14763637     NR_104193   MACROD2-IT1
33  chr20   14694977       15011644     NM_080676       MACROD2
34  chr20   14694977       15011644     NR_037841   MACROD2-AS1
36  chr21   23051770       23200760     NR_038872     LINC00317
37  chr21   23051770       23200760     NR_109958     LINC01425,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21870643       22016220  NM_001163380     RAB2B
1   chr14   21870643       22016220  NM_001170629      CHD8
2   chr14   21870643       22016220  NM_001303523      TOX4
3   chr14   21870643       22016220     NM_019852    METTL3
6   chr14   21870643       22016220     NR_111966     SALL2
8    chr2  134075505      134356493     NM_207363    NCKAP5
9    chr8    2032136        2234582     NM_003970     MYOM2
10   chr9   28693466       28951614  NM_001258282    LINGO2
12   chr9   28693466       28951614     NR_030597    MIR876
13   chr9   28693466       28951614     NR_030618    MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12839435       12986436  NM_001009611       PRAMEF4
1    chr1   12839435       12986436  NM_001012276       PRAMEF8
2    chr1   12839435       12986436  NM_001013631      HNRNPCL1
3    chr1   12839435       12986436  NM_001146181      HNRNPCL3
4    chr1   12839435       12986436  NM_001146344      PRAMEF11
5    chr1   12839435       12986436  NM_001294139       PRAMEF1
6    chr1   12839435       12986436  NM_001302551      HNRNPCL4
8    chr1   12839435       12986436     NM_023014       PRAMEF2
9   chr12   71445951       71573541     NM_004616        TSPAN8
10  chr22   17181567       17593309  NM_001037814          GAB4
11  chr22   17181567       17593309  NM_001289905        IL17RA
12  chr22   17181567       17593309     NM_175878          XKR3
13  chr22   17181567       17593309     NR_003607       HSFY1P1
14  chr22   17181567       17593309     NR_015352         CECR7
15  chr22   17181567       17593309     NR_134584  LOC101929350
16   chr4    9051913        9586474  NM_001040448       DEFB131
17   chr4    9051913        9586474  NM_001242326      USP17L25
25   chr4    9051913        9586474  NM_001256852      USP17L10
26   chr4    9051913        9586474  NM_001256853      USP17L12
28   chr4    9051913        9586474  NM_001256854      USP17L11
31   chr4    9051913        9586474  NM_001256855      USP17L13
32   chr4    9051913        9586474  NM_001256857      USP17L17
33   chr4    9051913        9586474  NM_001256860      USP17L19
34   chr4    9051913        9586474  NM_001256861      USP17L20
35   chr4    9051913        9586474  NM_001256894      USP17L15
36   chr4    9051913        9586474     NR_027279      USP17L6P
37   chr4    9051913        9586474     NR_031688      MIR548I2
38   chr4    9051913        9586474     NR_046416      USP17L9P
39   chr4  169183483      169315564  NM_001012967        DDX60L
41   chr4  169183483      169315564     NM_017631         DDX60
42   chr9  137569103      137674793     NM_000093        COL5A1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   95810397       96049459     NM_032427      MAML2
1   chr16   79009052       79140910     NM_016373       WWOX
2    chr2  110122640      110304724  NM_001099289     SH3RF3
3    chr2  110122640      110304724  NM_001321504     SEPT10
5   chr22   18977225       19265944  NM_001184781      DGCR2
6   chr22   18977225       19265944  NM_001256534    SLC25A1
7   chr22   18977225       19265944     NM_001835     CLTCL1
8   chr22   18977225       19265944     NM_005315       GSC2
10  chr22   18977225       19265944     NM_022719     DGCR14
11  chr22   18977225       19265944     NM_053006      TSSK2
12  chr22   18977225       19265944     NR_002733      DGCR5
13  chr22   18977225       19265944     NR_024157     DGCR11
14  chr22   18977225       19265944     NR_024159      DGCR9
15  chr22   18977225       19265944     NR_026651     DGCR10
16  chr22   18977225       19265944     NR_103767  LINC01311
18   chr6  162674544      162794584     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12    1053023        1176365  NM_001297419         RAD52
3   chr12    1053023        1176365  NM_001301248          ERC1
5   chr16   16273723       16495255  NM_001004067         NOMO3
6   chr16   16273723       16495255  NM_001079528         ABCC6
8   chr16   16273723       16495255  NM_001282511        NPIPA8
9   chr16   16273723       16495255     NR_036140     MIR3179-1
10  chr16   16273723       16495255     NR_036141     MIR3180-1
11  chr16   16273723       16495255     NR_036142     MIR3180-2
12  chr16   16273723       16495255     NR_036447        PKD1P1
13  chr16   16273723       16495255     NR_103772  LOC100288162
14  chr16   16273723       16495255     NR_106766     MIR6511A1
15  chr16   16273723       16495255     NR_106971     MIR6511A4
16  chr16   16273723       16495255     NR_107060     MIR6770-2
17  chr16   16273723       16495255     NR_128713     MIR3670-4
18   chr3    2302252        2493419  NM_001206955         CNTN4
20   chr4   69301380       69474120     NM_001077       UGT2B17
21   chr4   69301380       69474120     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  143713572      144088802  NM_001123068        PPIAL4G
1    chr1  143713572      144088802  NM_001287385         FAM72C
2    chr1  143713572      144088802  NM_001345942         FAM72D
6    chr1  143713572      144088802     NR_104014      LINC01138
7    chr1  143713572      144088802     NR_111930   LOC100132057
9   chr15   65403811       65602574     NM_003613           CILP
10  chr15   65403811       65602574     NM_005707          PDCD7
11  chr15   65403811       65602574     NM_006660           CLPX
12  chr15   65403811       65602574     NM_017851         PARP16
13  chr19    9409300        9511527  NM_001172650  ZNF559-ZNF177
14  chr19    9409300        9511527  NM_001172651         ZNF177
15  chr19    9409300        9511527  NM_001202406         ZNF559
19  chr19    9409300        9511527     NM_198535         ZNF699
20   chr5  110359859      110467097     NM_033035           TSLP
22   chr5  110359859      110467097     NM_139281          WDR36
24   chr6  161730758      161911873     NM_013988          PARK2
25   chr6  161730758      161911873     NR_134594   LOC105378098,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63176236       63453143     NR_047029     LINC00448
3   chr14   21674342       21784074     NM_020366       RPGRIP1
4   chr14   21674342       21784074     NM_031314        HNRNPC
5   chr14   21674342       21784074     NR_038971     LINC00641
6   chr16   14985188       15120438  NM_001285445        PDXDC1
12  chr16   14985188       15120438     NM_006985        NPIPA1
13  chr16   14985188       15120438     NM_014287         NOMO1
14  chr16   14985188       15120438     NR_036140     MIR3179-1
15  chr16   14985188       15120438     NR_036141     MIR3180-1
16  chr16   14985188       15120438     NR_036142     MIR3180-2
17  chr16   14985188       15120438     NR_103772  LOC100288162
18  chr16   14985188       15120438     NR_106970     MIR6511A3
19  chr16   14985188       15120438     NR_107060     MIR6770-2
20  chr16   14985188       15120438     NR_128713     MIR3670-4
21  chr20   14619189       14737632     NM_080676       MACROD2
22  chr20   14695028       15205578  NM_001033087       MACROD2
24  chr20   14695028       15205578     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  142678095      142785007     NR_046228  ANKRD20A12P
1   chr14   21780155       21929145  NM_001163380        RAB2B
2   chr14   21780155       21929145  NM_001170629         CHD8
3   chr14   21780155       21929145     NM_007192      SUPT16H
4   chr14   21780155       21929145     NM_020366      RPGRIP1
7   chr14   21780155       21929145     NR_002916       SNORD8
8   chr14   21780155       21929145     NR_003029       SNORD9
9   chr18   63219456       63510436  NM_001317214         CDH7
12   chr2   97221890       97549832  NM_001115016       KANSL3
13   chr2   97221890       97549832  NM_001122646      FAM178B
15   chr2   97221890       97549832  NM_001293083       FER1L5
16   chr2   97221890       97549832  NM_001322354       LMAN2L
17   chr2   97221890       97549832     NM_016466      ANKRD39
19   chr2   97221890       97549832     NM_017623        CNNM3
20   chr2   97221890       97549832     NM_017789       SEMA4C
21   chr2   97221890       97549832     NM_020184        CNNM4
23   chr2   97221890       97549832     NM_144994      ANKRD23
24   chr2   97221890       97549832     NR_036074      MIR3127,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  186016257      186135486     NM_031935          HMCN1
1   chr10   68133653       68258668  NM_001127384         CTNNA3
3   chr16   29554114       30224740     NM_000034          ALDOA
4   chr16   29554114       30224740  NM_001014999          SLX1A
5   chr16   29554114       30224740  NM_001017390        SULT1A4
6   chr16   29554114       30224740  NM_001030288            SPN
7   chr16   29554114       30224740  NM_001031827          BOLA2
8   chr16   29554114       30224740  NM_001040056          MAPK3
9   chr16   29554114       30224740  NM_001083613        TMEM219
10  chr16   29554114       30224740  NM_001109659       C16orf92
12  chr16   29554114       30224740  NM_001114099         SEZ6L2
14  chr16   29554114       30224740  NM_001145524          YPEL3
15  chr16   29554114       30224740  NM_001193333         CORO1A
17  chr16   29554114       30224740  NM_001256269          KIF22
19  chr16   29554114       30224740  NM_001256443          PRRT2
20  chr16   29554114       30224740  NM_001276275            MAZ
21  chr16   29554114       30224740  NM_001282062          DOC2A
24  chr16   29554114       30224740  NM_001286585          CDIPT
25  chr16   29554114       30224740  NM_001293204            MVP
26  chr16   29554114       30224740  NM_001303507          PPP4C
27  chr16   29554114       30224740  NM_001304562         INO80E
28  chr16   29554114       30224740  NM_001318249           QPRT
29  chr16   29554114       30224740  NM_001318504         FAM57B
33  chr16   29554114       30224740     NM_003609         HIRIP3
34  chr16   29554114       30224740     NM_004608           TBX6
35  chr16   29554114       30224740     NM_004783          TAOK2
38  chr16   29554114       30224740     NM_024307          GDPD3
39  chr16   29554114       30224740     NM_024516          PAGR1
42  chr16   29554114       30224740     NM_152338           ZG16
43  chr16   29554114       30224740     NM_175900       C16orf54
44  chr16   29554114       30224740     NM_178863         KCTD13
45  chr16   29554114       30224740     NM_181718         ASPHD1
47  chr16   29554114       30224740     NR_002454      LOC606724
48  chr16   29554114       30224740     NR_002556      LOC388242
49  chr16   29554114       30224740     NR_015396      CDIPT-AS1
51  chr16   29554114       30224740     NR_037608  SLX1A-SULT1A3
52  chr16   29554114       30224740     NR_049833      MIR3680-2
54  chr16   29554114       30224740     NR_135192   LOC101928595
56  chr16   29554114       30224740     NR_135305         SMG1P2
58   chr4   69244888       69377686     NM_014058      TMPRSS11E
59   chr9   20793549       20975435     NM_017794          FOCAD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143118509      143381465     NR_110761  LOC102723769
1   chr13   63296089       63429339     NR_047029     LINC00448
4   chr14   21751314       21953130  NM_001163380         RAB2B
5   chr14   21751314       21953130  NM_001170629          CHD8
6   chr14   21751314       21953130  NM_001303523          TOX4
7   chr14   21751314       21953130     NM_007192       SUPT16H
8   chr14   21751314       21953130     NM_020366       RPGRIP1
11  chr14   21751314       21953130     NR_002916        SNORD8
12  chr14   21751314       21953130     NR_003029        SNORD9
13   chr7   57273253       57489086     NR_036102       MIR3147
14   chr7   57273253       57489086     NR_136269  LOC105375297
15   chr7   63938625       64132864  NM_001130022        ZNF680
16   chr7   63938625       64132864  NM_001282360        ZNF107
18   chr7   63938625       64132864     NR_033245     LOC641746
19   chr7   63938625       64132864     NR_077227  LOC100128885,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21835900       21936174  NM_001163380         RAB2B
1   chr14   21835900       21936174  NM_001170629          CHD8
2   chr14   21835900       21936174     NM_007192       SUPT16H
5   chr14   21835900       21936174     NR_002916        SNORD8
6   chr14   21835900       21936174     NR_003029        SNORD9
7    chr2   51285906       51397284     NR_135237     LOC730100
8   chr22   17221032       17322807     NM_175878          XKR3
9   chr22   17221032       17322807     NR_003607       HSFY1P1
10  chr22   17221032       17322807     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21777548       22517669  NM_001001912     OR4E2
1   chr14   21777548       22517669  NM_001005465    OR10G3
2   chr14   21777548       22517669  NM_001005466    OR10G2
3   chr14   21777548       22517669  NM_001163380     RAB2B
4   chr14   21777548       22517669  NM_001170629      CHD8
5   chr14   21777548       22517669  NM_001303523      TOX4
6   chr14   21777548       22517669  NM_001317107     OR4E1
7   chr14   21777548       22517669     NM_007192   SUPT16H
8   chr14   21777548       22517669     NM_019852    METTL3
9   chr14   21777548       22517669     NM_020366   RPGRIP1
12  chr14   21777548       22517669     NR_002916    SNORD8
13  chr14   21777548       22517669     NR_003029    SNORD9
14  chr14   21777548       22517669     NR_111966     SALL2
16   chr7    3281404        3469584     NM_152744      SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145261925      145444471  NM_001277444         NBPF9
1    chr1  145261925      145444471  NM_001278267        NBPF20
2    chr1  145261925      145444471  NM_001302371        NBPF10
3    chr1  145261925      145444471  NM_001313972         TXNIP
5    chr1  145261925      145444471     NM_145277          HFE2
6    chr1  145261925      145444471     NM_203458      NOTCH2NL
7    chr1  145261925      145444471     NR_104217       NBPF25P
8    chr1  145261925      145444471     NR_125967  LOC101928979
9   chr11  134296636      135036757     NR_033852     LOC283177
10  chr11  134296636      135036757     NR_135050  LOC100507548
11  chr15   28704685       29090158  NM_001282468       GOLGA8M
12  chr15   28704685       29090158     NR_026589       WHAMMP2
13  chr15   28704685       29090158     NR_033351       GOLGA8F
14  chr15   28704685       29090158     NR_033353       GOLGA8G
15  chr15   28704685       29090158     NR_036443       HERC2P9
16  chr15   28704685       29090158     NR_036475  LOC100289656
17  chr15   28704685       29090158     NR_037599     PDCD6IPP2
18  chr15   28704685       29090158     NR_039734     MIR4509-3
19  chr15   28704685       29090158     NR_047567     GOLGA6L7P
20  chr21   29997938       30256086     NM_013240        N6AMT1
22   chr4   30698693       30899791  NM_001173523         PCDH7
25   chr9   14865672       14981044     NM_144966         FREM1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18461317       18628680  NM_001004060         NOMO2
1   chr16   18461317       18628680     NR_003569       ABCC6P1
2   chr16   18461317       18628680     NR_036140     MIR3179-1
3   chr16   18461317       18628680     NR_036142     MIR3180-2
4   chr16   18461317       18628680     NR_036144     MIR3180-3
5   chr16   18461317       18628680     NR_037442     MIR3670-1
6   chr16   18461317       18628680     NR_107060     MIR6770-2
7    chr2   50984062       53103191  NM_001330079         NRXN1
10   chr2   50984062       53103191     NR_039630       MIR4431
11   chr2   50984062       53103191     NR_135237     LOC730100
12   chr2   50984062       53103191     NR_135239  LOC105374596
13   chr4   30699434       30818060  NM_001173523         PCDH7
16   chr8  143454430      143572739  NM_001291931       TSNARE1
17   chr8  143454430      143572739     NM_001702        ADGRB1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   37391313       37516101     NM_052997  ANKRD30A
1   chr14   21810771       21993960  NM_001163380     RAB2B
2   chr14   21810771       21993960  NM_001170629      CHD8
3   chr14   21810771       21993960  NM_001303523      TOX4
4   chr14   21810771       21993960     NM_007192   SUPT16H
5   chr14   21810771       21993960     NM_019852    METTL3
6   chr14   21810771       21993960     NM_020366   RPGRIP1
9   chr14   21810771       21993960     NR_002916    SNORD8
10  chr14   21810771       21993960     NR_003029    SNORD9
11  chr14   21810771       21993960     NR_111966     SALL2
13  chr17   47842878       47943642  NM_001077503      TAC4
14  chr17   47842878       47943642  NM_001199158      KAT7
15  chr17   47842878       47943642  NM_001242791  FLJ45513
16   chr7  110552329      110800507  NM_001099658     LRRN3
17   chr7  110552329      110800507  NM_001244606    IMMP2L
19   chr9   39011389       39132201     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18266002       18741417  NM_001004060         NOMO2
1   chr16   18266002       18741417  NM_001282511        NPIPA8
2   chr16   18266002       18741417     NR_003569       ABCC6P1
3   chr16   18266002       18741417     NR_036140     MIR3179-1
4   chr16   18266002       18741417     NR_036142     MIR3180-2
5   chr16   18266002       18741417     NR_036144     MIR3180-3
6   chr16   18266002       18741417     NR_037442     MIR3670-1
7   chr16   18266002       18741417     NR_103772  LOC100288162
8   chr16   18266002       18741417     NR_106971     MIR6511A4
9   chr16   18266002       18741417     NR_107060     MIR6770-2
10   chr7   64063194       64260729  NM_001160183        ZNF138
11   chr7   64063194       64260729  NM_001282360        ZNF107
13   chr7   64063194       64260729     NR_077227  LOC100128885
15   chr7   64063194       64260729     NR_106898       MIR6839
16   chr7  123470723      123588839  NM_001174044         SPAM1
19   chr7  123470723      123588839     NM_012269         HYAL4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28187024       28310146     NM_000275          OCA2
2   chr16   16429161       16674898  NM_001282511        NPIPA8
3   chr16   16429161       16674898     NR_036447        PKD1P1
4   chr16   16429161       16674898     NR_106971     MIR6511A4
5   chr17    1107413        1215644  NM_001164405        BHLHA9
6   chr17    1107413        1215644  NM_001322841           ABR
8   chr17    1107413        1215644     NM_172367         TUSC5
9   chr22   17259792       17625816  NM_001037814          GAB4
10  chr22   17259792       17625816  NM_001163079         CECR6
11  chr22   17259792       17625816  NM_001289905        IL17RA
12  chr22   17259792       17625816     NM_017829         CECR5
15  chr22   17259792       17625816     NM_175878          XKR3
16  chr22   17259792       17625816     NR_003607       HSFY1P1
17  chr22   17259792       17625816     NR_015352         CECR7
18  chr22   17259792       17625816     NR_103793  LOC100996342
19   chr3  197204055      197314327     NM_203314          BDH1
21   chr7     131693         325358     NM_020223        FAM20C
22   chr7     131693         325358     NR_108065  LOC100507642
23   chr7     131693         325358     NR_134324  LOC105375115
24   chr7     131693         325358     NR_134325  LOC102723672
25   chr8   58066805       58190690     NR_038235     LINC01606
26   chr8   58066805       58190690     NR_038874     LOC286177,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   76014413       76342956     NM_000016         ACADM
1    chr1   76014413       76342956  NM_001130058       SLC44A5
4    chr1   76014413       76342956     NM_002440          MSH4
5    chr1   76014413       76342956     NM_004582       RABGGTB
7    chr1   76014413       76342956     NR_002748      SNORD45B
8    chr1   76014413       76342956     NR_002749      SNORD45A
9    chr1   76014413       76342956     NR_003042      SNORD45C
10   chr1   76014413       76342956     NR_130749        DLSTP1
11  chr14   21941912       22231946  NM_001001912         OR4E2
12  chr14   21941912       22231946  NM_001005465        OR10G3
13  chr14   21941912       22231946  NM_001005466        OR10G2
14  chr14   21941912       22231946  NM_001163380         RAB2B
15  chr14   21941912       22231946  NM_001303523          TOX4
16  chr14   21941912       22231946  NM_001317107         OR4E1
17  chr14   21941912       22231946     NM_019852        METTL3
19  chr14   21941912       22231946     NR_111966         SALL2
21   chr4  190424033      190622200     NR_121679     LINC01262
22   chr4  190424033      190622200     NR_135513  LOC105379514
23   chr7   75354859       75486306  NM_001243198          HIP1
24   chr7   75354859       75486306     NM_002991         CCL24
25   chr7   75354859       75486306     NM_006072         CCL26
26   chr8    7102021        7202962  NM_001256873       USP17L1
27   chr8    7102021        7202962  NM_001256874       USP17L4
28   chr8    7102021        7202962     NR_003668    DEFB109P1B
29   chr8    7102021        7202962     NR_027000     LINC00965
32   chr8    7102021        7202962     NR_027423        FAM66B
33   chr9    9860025        9962735     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   19583533       20053210  NM_001267043         AEBP2
2   chr15   28777945       29092799  NM_001282468       GOLGA8M
3   chr15   28777945       29092799     NR_026589       WHAMMP2
4   chr15   28777945       29092799     NR_033351       GOLGA8F
5   chr15   28777945       29092799     NR_033353       GOLGA8G
6   chr15   28777945       29092799     NR_036443       HERC2P9
7   chr15   28777945       29092799     NR_036475  LOC100289656
8   chr15   28777945       29092799     NR_037599     PDCD6IPP2
9   chr15   28777945       29092799     NR_047567     GOLGA6L7P
10   chr2  117965970      118876846  NM_001321332        INSIG2
12   chr2  117965970      118876846     NM_006773         DDX18
13   chr2  117965970      118876846     NM_019044        CCDC93
14   chr7    3258945        3359679     NM_152744          SDK1
15   chr9   39074624       39290457     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20974722       21528618  NM_001277303        POTEB2
1   chr15   20974722       21528618     NM_207355        POTEB3
2   chr15   20974722       21528618     NR_028506         NF1P2
3   chr15   20974722       21528618     NR_036062     MIR3118-2
4   chr15   20974722       21528618     NR_040094     LINC01193
5   chr15   20974722       21528618     NR_049895     MIR5701-2
7   chr16   18150665       19575931  NM_001004060         NOMO2
8   chr16   18150665       19575931     NM_001019        RPS15A
9   chr16   18150665       19575931  NM_001105249          TMC5
10  chr16   18150665       19575931  NM_001160364          TMC7
11  chr16   18150665       19575931  NM_001190983          COQ7
12  chr16   18150665       19575931  NM_001199022        CCP110
13  chr16   18150665       19575931  NM_001256720       CLEC19A
15  chr16   18150665       19575931  NM_001282511        NPIPA8
17  chr16   18150665       19575931  NM_001308157         SYT17
19  chr16   18150665       19575931  NM_001313858       ARL6IP1
20  chr16   18150665       19575931  NM_001324066          GDE1
23  chr16   18150665       19575931     NM_015092          SMG1
28  chr16   18150665       19575931     NM_020314      C16orf62
30  chr16   18150665       19575931     NR_003569       ABCC6P1
31  chr16   18150665       19575931     NR_028028      ITPRIPL2
32  chr16   18150665       19575931     NR_036140     MIR3179-1
33  chr16   18150665       19575931     NR_036142     MIR3180-2
34  chr16   18150665       19575931     NR_036144     MIR3180-3
35  chr16   18150665       19575931     NR_037442     MIR3670-1
36  chr16   18150665       19575931     NR_103772  LOC100288162
37  chr16   18150665       19575931     NR_106971     MIR6511A4
38  chr16   18150665       19575931     NR_107060     MIR6770-2
39  chr16   18150665       19575931     NR_119379  LOC102723385
41  chr16   80738822       80911926     NM_152342         CDYL2
42  chr16   80738822       80911926     NR_131948       PRCAT47
43   chr2  233020622      233197646  NM_001257281        DIS3L2
45  chr20   40687946       40879376     NM_133170         PTPRT
46   chr5   16964384       17347409  NM_001271606         BASP1
48   chr5   16964384       17347409     NR_027253     LOC285696
49   chr5   99854072       99983731     NM_198507       FAM174A,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr12   72646716       72893379     NM_013381          TRHDE
1   chr12   72646716       72893379     NR_026836      TRHDE-AS1
3   chr16   14996409       15643319  NM_001128423         MPV17L
4   chr16   14996409       15643319  NM_001142469       C16orf45
5   chr16   14996409       15643319  NM_001270767          NTAN1
6   chr16   14996409       15643319  NM_001277325         NPIPA5
7   chr16   14996409       15643319  NM_001285445         PDXDC1
12  chr16   14996409       15643319  NM_001301064           RRN3
14  chr16   14996409       15643319     NM_006985         NPIPA1
16  chr16   14996409       15643319     NR_036141      MIR3180-1
17  chr16   14996409       15643319     NR_036142      MIR3180-2
18  chr16   14996409       15643319     NR_037466      MIR3180-4
19  chr16   14996409       15643319     NR_103772   LOC100288162
20  chr16   14996409       15643319     NR_106775      MIR6511B1
21  chr16   14996409       15643319     NR_106965      MIR6511B2
22  chr16   14996409       15643319     NR_106970      MIR6511A3
23  chr16   14996409       15643319     NR_107060      MIR6770-2
24  chr16   14996409       15643319     NR_123721  PKD1P6-NPIPP1
26  chr16   14996409       15643319     NR_125434   LOC100505915
27  chr16   14996409       15643319     NR_128713      MIR3670-4
28  chr17      45170         174353  NM_001190411         RPH3AL
29  chr18   61758989       61903648     NR_027245      LINC00305
30  chr18   61758989       61903648     NR_033881      LOC284294
31  chr18   61758989       61903648     NR_033983      LINC01538
32   chr2  130601456      131292069  NM_001079530          CFC1B
33   chr2  130601456      131292069  NM_001099771          POTEF
34   chr2  130601456      131292069  NM_001142370         PTPN18
35   chr2  130601456      131292069  NM_001258307        CCDC74B
36   chr2  130601456      131292069  NM_001277406          POTEI
37   chr2  130601456      131292069  NM_001320304           IMP4
38   chr2  130601456      131292069  NM_001321118        CCDC115
40   chr2  130601456      131292069  NM_001330282          MZT2B
41   chr2  130601456      131292069     NM_017951          SMPD4
42   chr2  130601456      131292069     NM_032144          RAB6C
44   chr2  130601456      131292069     NM_207312         TUBA3E
45   chr2  130601456      131292069     NR_026740      LOC389033
46   chr2  130601456      131292069     NR_026758         FAR2P1
48   chr2  130601456      131292069     NR_033903        MED15P9
49   chr2  130601456      131292069     NR_036537      RAB6C-AS1
50   chr2  130601456      131292069     NR_046260         FAR2P2
51   chr2  130601456      131292069     NR_103761       CYP4F62P
52   chr2  130601456      131292069     NR_110285   LOC101927924
53   chr7   16484223       16590127  NM_001195280         LRRC72
54   chr7   16484223       16590127     NM_015464        SOSTDC1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   67211020       67312686  NM_001018070     CORO1B
1   chr11   67211020       67312686  NM_001078650    TMEM134
2   chr11   67211020       67312686  NM_001300895      CABP4
4   chr11   67211020       67312686  NM_001302959        AIP
5   chr11   67211020       67312686  NM_001318496      CABP2
7   chr11   67211020       67312686     NM_004910    PITPNM1
8   chr11   67211020       67312686     NM_005851    CDK2AP2
10  chr11   67211020       67312686     NM_206997     GPR152
12  chr11   67211020       67312686     NR_106810    MIR6752
13   chr2   35670963       36097536     NR_039629   MIR548AD
14  chr22   19036562       19172590  NM_001184781      DGCR2
15  chr22   19036562       19172590  NM_001256534    SLC25A1
16  chr22   19036562       19172590     NM_001835     CLTCL1
17  chr22   19036562       19172590     NM_005315       GSC2
19  chr22   19036562       19172590     NM_022719     DGCR14
20  chr22   19036562       19172590     NM_053006      TSSK2
21  chr22   19036562       19172590     NR_103767  LINC01311
22   chr3  145829929      146299498     NM_000935      PLOD2
23   chr3  145829929      146299498  NM_001128304     PLSCR4
25   chr3  145829929      146299498  NM_001199978     PLSCR2
27   chr3  145829929      146299498  NM_001321245     PLSCR5
28   chr3  145829929      146299498     NM_021105     PLSCR1
29   chr3  160078323      160247408  NM_001190241      IFT80
31   chr3  160078323      160247408  NM_001288753       SMC4
32   chr3  160078323      160247408     NM_002268      KPNA4
34   chr3  160078323      160247408     NM_173084     TRIM59
35   chr3  160078323      160247408     NR_003001    SCARNA7
36   chr3  160078323      160247408     NR_029525    MIR16-2
37   chr3  160078323      160247408     NR_029663     MIR15B
38   chr4  167614574      170158849  NM_001012967     DDX60L
39   chr4  167614574      170158849  NM_001166108      PALLD
42   chr4  167614574      170158849  NM_001204353     SPOCK3
46   chr4  167614574      170158849     NM_007193     ANXA10
47   chr4  167614574      170158849     NM_017631      DDX60
48   chr4  167614574      170158849     NM_020870     SH3RF1
49   chr4  167614574      170158849     NM_032783       CBR4
50   chr7    2657375        2775466  NM_001282440      GNA12
52   chr7    2657375        2775466  NM_001284355       AMZ1
55   chr7    2657375        2775466     NM_025250      TTYH3,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr15   20717314       20927961  NM_001145004      GOLGA6L6
1    chr15   20717314       20927961     NR_027411      GOLGA8CP
2    chr15   20717314       20927961     NR_027992        NBEAP1
3    chr16   18120934       19438733  NM_001004060         NOMO2
4    chr16   18120934       19438733     NM_001019        RPS15A
5    chr16   18120934       19438733  NM_001105249          TMC5
6    chr16   18120934       19438733  NM_001160364          TMC7
7    chr16   18120934       19438733  NM_001190983          COQ7
8    chr16   18120934       19438733  NM_001256720       CLEC19A
10   chr16   18120934       19438733  NM_001282511        NPIPA8
12   chr16   18120934       19438733  NM_001308157         SYT17
14   chr16   18120934       19438733  NM_001313858       ARL6IP1
17   chr16   18120934       19438733     NM_015092          SMG1
21   chr16   18120934       19438733     NR_003569       ABCC6P1
22   chr16   18120934       19438733     NR_028028      ITPRIPL2
23   chr16   18120934       19438733     NR_036140     MIR3179-1
24   chr16   18120934       19438733     NR_036142     MIR3180-2
25   chr16   18120934       19438733     NR_036144     MIR3180-3
26   chr16   18120934       19438733     NR_037442     MIR3670-1
27   chr16   18120934       19438733     NR_103772  LOC100288162
28   chr16   18120934       19438733     NR_106971     MIR6511A4
29   chr16   18120934       19438733     NR_107060     MIR6770-2
30   chr16   18120934       19438733     NR_119379  LOC102723385
32   chr16   83001380       83319645  NM_001220488         CDH13
34   chr16   83001380       83319645     NR_110937  LOC101928417
35   chr17   63586649       63688441  NM_001037325        CEP112
38   chr18     587332         710495  NM_001012716        TYMSOS
39   chr18     587332         710495     NM_001071          TYMS
40   chr18     587332         710495  NM_001126123        ENOSF1
41   chr18     587332         710495  NM_001289036         CLUL1
..     ...        ...            ...           ...           ...
73   chr22   20553632       22228059     NM_006767         LZTR1
74   chr22   20553632       22228059     NM_013313         YPEL1
75   chr22   20553632       22228059     NM_015094          HIC2
76   chr22   20553632       22228059     NM_022044        SDF2L1
77   chr22   20553632       22228059     NM_030573         THAP7
78   chr22   20553632       22228059     NM_058004         PI4KA
81   chr22   20553632       22228059     NM_153334        SCARF2
82   chr22   20553632       22228059     NR_002829        P2RX6P
83   chr22   20553632       22228059     NR_003608       TUBA3FP
84   chr22   20553632       22228059     NR_003700       PI4KAP2
85   chr22   20553632       22228059     NR_024583     POM121L8P
86   chr22   20553632       22228059     NR_024592     POM121L4P
87   chr22   20553632       22228059     NR_026815      TMEM191A
88   chr22   20553632       22228059     NR_027051     THAP7-AS1
91   chr22   20553632       22228059     NR_029845       MIR130B
92   chr22   20553632       22228059     NR_030379        MIR649
93   chr22   20553632       22228059     NR_030622       MIR301B
94   chr22   20553632       22228059     NR_033825        KLHL22
95   chr22   20553632       22228059     NR_037566         BCRP2
97   chr22   20553632       22228059     NR_108107       FAM230B
98   chr22   20553632       22228059     NR_110537  LOC101928891
99   chr22   20553632       22228059     NR_136559  LOC100996335
100  chr22   20553632       22228059     NR_136569     LOC729461
101  chr22   20553632       22228059     NR_136572  LOC101927859
102  chr22   20553632       22228059     NR_136575  LOC102724728
104   chr3  148114390      148592973     NM_001870          CPA3
105   chr3  148114390      148592973     NM_001871          CPB1
106   chr3  148114390      148592973     NM_009585         AGTR1
108   chr7  110728259      110872932  NM_001099658         LRRN3
109   chr7  110728259      110872932  NM_001244606        IMMP2L

[81 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   14788776       15248558  NM_001270767          NTAN1
1   chr16   14788776       15248558  NM_001277323         NPIPA3
3   chr16   14788776       15248558  NM_001277324         NPIPA2
5   chr16   14788776       15248558  NM_001285445         PDXDC1
10  chr16   14788776       15248558  NM_001301064           RRN3
12  chr16   14788776       15248558     NM_006985         NPIPA1
13  chr16   14788776       15248558     NM_014287          NOMO1
14  chr16   14788776       15248558     NR_023387        ABCC6P2
15  chr16   14788776       15248558     NR_036140      MIR3179-1
16  chr16   14788776       15248558     NR_036141      MIR3180-1
17  chr16   14788776       15248558     NR_036142      MIR3180-2
18  chr16   14788776       15248558     NR_103772   LOC100288162
19  chr16   14788776       15248558     NR_106775      MIR6511B1
20  chr16   14788776       15248558     NR_106965      MIR6511B2
21  chr16   14788776       15248558     NR_106970      MIR6511A3
22  chr16   14788776       15248558     NR_107060      MIR6770-2
23  chr16   14788776       15248558     NR_123721  PKD1P6-NPIPP1
25  chr16   14788776       15248558     NR_125434   LOC100505915
26  chr16   14788776       15248558     NR_128713      MIR3670-4
27   chr7   69111058       69226269  NM_001127231          AUTS2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21792806       22075025  NM_001005465    OR10G3
1   chr14   21792806       22075025  NM_001163380     RAB2B
2   chr14   21792806       22075025  NM_001170629      CHD8
3   chr14   21792806       22075025  NM_001303523      TOX4
4   chr14   21792806       22075025     NM_007192   SUPT16H
5   chr14   21792806       22075025     NM_019852    METTL3
6   chr14   21792806       22075025     NM_020366   RPGRIP1
9   chr14   21792806       22075025     NR_002916    SNORD8
10  chr14   21792806       22075025     NR_003029    SNORD9
11  chr14   21792806       22075025     NR_111966     SALL2
13  chr17   78093677       78214818     NM_000152       GAA
14  chr17   78093677       78214818     NM_000199      SGSH
15  chr17   78093677       78214818  NM_001166349  SLC26A11
16  chr17   78093677       78214818  NM_001257970    CARD14
17  chr17   78093677       78214818     NM_014740    EIF4A3
21   chr4   71367872       71503900  NM_001286731      AMTN
22   chr4   71367872       71503900     NM_016519      AMBN
23   chr4   71367872       71503900     NM_031889      ENAM
24   chr4  169195923      169335701  NM_001012967    DDX60L
26   chr4  169195923      169335701     NM_017631     DDX60
27   chr5  161114667      161225517     NM_000811    GABRA6
28   chr7  110407242      110561929  NM_001244606    IMMP2L
30   chr9   38851552       39240307     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28675472       29927304  NM_001130414         APBA2
1   chr15   28675472       29927304  NM_001282468       GOLGA8M
2   chr15   28675472       29927304     NM_015307      FAM189A1
3   chr15   28675472       29927304     NM_138704        NSMCE3
4   chr15   28675472       29927304     NR_026589       WHAMMP2
5   chr15   28675472       29927304     NR_033351       GOLGA8F
6   chr15   28675472       29927304     NR_033353       GOLGA8G
7   chr15   28675472       29927304     NR_036443       HERC2P9
8   chr15   28675472       29927304     NR_036475  LOC100289656
9   chr15   28675472       29927304     NR_037599     PDCD6IPP2
10  chr15   28675472       29927304     NR_039734     MIR4509-3
11  chr15   28675472       29927304     NR_047567     GOLGA6L7P
12   chr7   16515575       16657298  NM_001195280        LRRC72
13   chr7   16515575       16657298     NM_020319        ANKMY2
14   chr8   15284944       15495357     NM_006765         TUSC3
15   chr9   11615308       13019080     NM_000550         TYRP1
16   chr9   11615308       13019080     NM_203403       LURAP1L
17   chr9   11615308       13019080     NR_125775   LURAP1L-AS1
18   chr9   11615308       13019080     NR_132976      SNORD137
19   chr9  137585198      137687908     NM_000093        COL5A1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21798155       22116420  NM_001005465    OR10G3
1   chr14   21798155       22116420  NM_001005466    OR10G2
2   chr14   21798155       22116420  NM_001163380     RAB2B
3   chr14   21798155       22116420  NM_001170629      CHD8
4   chr14   21798155       22116420  NM_001303523      TOX4
5   chr14   21798155       22116420     NM_007192   SUPT16H
6   chr14   21798155       22116420     NM_019852    METTL3
7   chr14   21798155       22116420     NM_020366   RPGRIP1
10  chr14   21798155       22116420     NR_002916    SNORD8
11  chr14   21798155       22116420     NR_003029    SNORD9
12  chr14   21798155       22116420     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37444022       37578549     NM_052997      ANKRD30A
1   chr14   21877637       22202173  NM_001001912         OR4E2
2   chr14   21877637       22202173  NM_001005465        OR10G3
3   chr14   21877637       22202173  NM_001005466        OR10G2
4   chr14   21877637       22202173  NM_001163380         RAB2B
5   chr14   21877637       22202173  NM_001170629          CHD8
6   chr14   21877637       22202173  NM_001303523          TOX4
7   chr14   21877637       22202173  NM_001317107         OR4E1
8   chr14   21877637       22202173     NM_019852        METTL3
11  chr14   21877637       22202173     NR_111966         SALL2
13  chr15   28304691       29679998     NM_000275          OCA2
14  chr15   28304691       29679998  NM_001130414         APBA2
15  chr15   28304691       29679998  NM_001282468       GOLGA8M
17  chr15   28304691       29679998     NM_004667         HERC2
18  chr15   28304691       29679998     NM_015307      FAM189A1
19  chr15   28304691       29679998     NM_138704        NSMCE3
20  chr15   28304691       29679998     NR_026589       WHAMMP2
21  chr15   28304691       29679998     NR_033351       GOLGA8F
23  chr15   28304691       29679998     NR_033353       GOLGA8G
25  chr15   28304691       29679998     NR_036443       HERC2P9
26  chr15   28304691       29679998     NR_036475  LOC100289656
27  chr15   28304691       29679998     NR_037599     PDCD6IPP2
28  chr15   28304691       29679998     NR_039734     MIR4509-3
30  chr15   28304691       29679998     NR_047567     GOLGA6L7P
31   chr7   71463804       71729211  NM_001017440         CALN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21788386       22035874  NM_001163380         RAB2B
1   chr14   21788386       22035874  NM_001170629          CHD8
2   chr14   21788386       22035874  NM_001303523          TOX4
3   chr14   21788386       22035874     NM_007192       SUPT16H
4   chr14   21788386       22035874     NM_019852        METTL3
5   chr14   21788386       22035874     NM_020366       RPGRIP1
8   chr14   21788386       22035874     NR_002916        SNORD8
9   chr14   21788386       22035874     NR_003029        SNORD9
10  chr14   21788386       22035874     NR_111966         SALL2
12  chr15   30236044       30356856  NM_001301025          TJP1
13  chr16   58755170       60163694  NM_001286220          GOT2
14  chr16   58755170       60163694     NR_028471        APOOP5
15  chr16   58755170       60163694     NR_110917  LOC101927580
16   chr9   41515132       41793771     NR_003528       ZNF658B
17   chr9   41515132       41793771     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr2   50806478       51015145  NM_001330082      NRXN1
1    chr2   50806478       51015145     NR_130470    MIR8485
2   chr22   19015566       19461253  NM_001035247      UFD1L
3   chr22   19015566       19461253  NM_001166242   C22orf39
4   chr22   19015566       19461253  NM_001184781      DGCR2
5   chr22   19015566       19461253  NM_001256534    SLC25A1
6   chr22   19015566       19461253  NM_001318151     MRPL40
8   chr22   19015566       19461253     NM_001835     CLTCL1
9   chr22   19015566       19461253     NM_003325       HIRA
11  chr22   19015566       19461253     NM_005315       GSC2
13  chr22   19015566       19461253     NM_022719     DGCR14
14  chr22   19015566       19461253     NM_053006      TSSK2
16  chr22   19015566       19461253     NR_024157     DGCR11
17  chr22   19015566       19461253     NR_103767  LINC01311
18  chr22   19015566       19461253     NR_110533      DGCR5
19   chr3  197199982      197530622  NM_001011537     FYTTD1
20   chr3  197199982      197530622  NM_001145642      RUBCN
23   chr3  197199982      197530622     NM_032773      LRCH3
24   chr3  197199982      197530622     NM_203314       BDH1
26   chr3  197199982      197530622     NR_003266  LOC220729
28   chr3  197199982      197530622     NR_030627     MIR922
29   chr9   38963967       39249100     NM_033655    CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   61821296       61932255     NM_001796          CDH8
1  chr18    8086633        8550120     NM_002845         PTPRM
2  chr18    8086633        8550120     NR_024419  LOC100192426
3  chr22   17210166       17540806  NM_001037814          GAB4
4  chr22   17210166       17540806     NM_175878          XKR3
5  chr22   17210166       17540806     NR_003607       HSFY1P1
6  chr22   17210166       17540806     NR_015352         CECR7
7  chr22   17210166       17540806     NR_134584  LOC101929350
8   chr7  110663625      110841959  NM_001099658         LRRN3
9   chr7  110663625      110841959  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   75992618       76105528  NM_001130058    SLC44A5
4    chr1  171315963      171550354     NM_015172     PRRC2C
5   chr13   63112765       63280660     NR_047029  LINC00448
6   chr14   21750936       21880371  NM_001170629       CHD8
7   chr14   21750936       21880371     NM_007192    SUPT16H
8   chr14   21750936       21880371     NM_020366    RPGRIP1
10  chr14   21750936       21880371     NR_002916     SNORD8
11  chr14   21750936       21880371     NR_003029     SNORD9
12   chr2   97224050       97380391  NM_001115016     KANSL3
13   chr2   97224050       97380391  NM_001293083     FER1L5
14   chr2   97224050       97380391  NM_001322354     LMAN2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18311062       18530836  NM_001004060         NOMO2
1   chr16   18311062       18530836  NM_001282511        NPIPA8
2   chr16   18311062       18530836     NR_036140     MIR3179-1
3   chr16   18311062       18530836     NR_036142     MIR3180-2
4   chr16   18311062       18530836     NR_036144     MIR3180-3
5   chr16   18311062       18530836     NR_037442     MIR3670-1
6   chr16   18311062       18530836     NR_103772  LOC100288162
7   chr16   18311062       18530836     NR_106971     MIR6511A4
8   chr16   18311062       18530836     NR_107060     MIR6770-2
9   chr16   31896642       32118220  NM_001265588        ZNF267
10   chr2  129523446      129636636     NR_110278  LOC101927881
11   chr6  154078550      155113501  NM_001008503         OPRM1
13   chr6  154078550      155113501  NM_001130699        IPCEF1
21   chr6  154078550      155113501  NM_001286188         SCAF8
23   chr6  154078550      155113501     NM_173515        CNKSR3
26   chr6  162546031      162732150     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   84110126       84454762  NM_001142699          DLG2
2   chr12   71509614       71701418     NM_004616        TSPAN8
3   chr16   18371331       18575343  NM_001004060         NOMO2
4   chr16   18371331       18575343  NM_001282511        NPIPA8
5   chr16   18371331       18575343     NR_036140     MIR3179-1
6   chr16   18371331       18575343     NR_036142     MIR3180-2
7   chr16   18371331       18575343     NR_036144     MIR3180-3
8   chr16   18371331       18575343     NR_037442     MIR3670-1
9   chr16   18371331       18575343     NR_103772  LOC100288162
10  chr16   18371331       18575343     NR_106971     MIR6511A4
11  chr16   18371331       18575343     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143687953      144871768  NM_001123068       PPIAL4G
1    chr1  143687953      144871768  NM_001135789       PPIAL4C
2    chr1  143687953      144871768  NM_001198832       PDE4DIP
4    chr1  143687953      144871768  NM_001277444         NBPF9
5    chr1  143687953      144871768  NM_001278267        NBPF20
6    chr1  143687953      144871768  NM_001287385        FAM72C
7    chr1  143687953      144871768  NM_001345942        FAM72D
11   chr1  143687953      144871768     NR_003242        PFN1P2
12   chr1  143687953      144871768     NR_024511     LINC00623
14   chr1  143687953      144871768     NR_102405         NBPF8
15   chr1  143687953      144871768     NR_104014     LINC01138
16   chr1  143687953      144871768     NR_111930  LOC100132057
17   chr1  143687953      144871768     NR_111953     LINC00869
19  chr20   14705168       14909427     NM_080676       MACROD2
20  chr20   14705168       14909427     NR_037841   MACROD2-AS1
22  chr20   14824876       15009226     NM_080676       MACROD2
23  chr20   14824876       15009226     NR_037841   MACROD2-AS1
25   chr4  136830413      137442486     NR_103763     LINC00613,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21795752       21909204  NM_001170629      CHD8
1  chr14   21795752       21909204     NM_007192   SUPT16H
2  chr14   21795752       21909204     NM_020366   RPGRIP1
4  chr14   21795752       21909204     NR_002916    SNORD8
5  chr14   21795752       21909204     NR_003029    SNORD9
6   chr2   50787854       51191885  NM_001330079     NRXN1
9   chr2   50787854       51191885     NR_130470   MIR8485,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  193302886      193403615     NR_125789     LINC01031
1   chr10   56515921       56834310  NM_001142770        PCDH15
4   chr11   83450595       83552615  NM_001142699          DLG2
8   chr14   21919110       22163497  NM_001001912         OR4E2
9   chr14   21919110       22163497  NM_001005465        OR10G3
10  chr14   21919110       22163497  NM_001005466        OR10G2
11  chr14   21919110       22163497  NM_001163380         RAB2B
12  chr14   21919110       22163497  NM_001303523          TOX4
13  chr14   21919110       22163497  NM_001317107         OR4E1
14  chr14   21919110       22163497     NM_019852        METTL3
16  chr14   21919110       22163497     NR_111966         SALL2
18  chr15  100173579      100290272  NM_001130928         MEF2A
19  chr15  100173579      100290272  NM_001284417        LYSMD4
22  chr16   83958183       84579702  NM_001080442       SLC38A8
23  chr16   83958183       84579702  NM_001145400         ADAD2
24  chr16   83958183       84579702  NM_001146051         HSDL1
25  chr16   83958183       84579702  NM_001243156         TAF1C
26  chr16   83958183       84579702  NM_001282466         WFDC1
27  chr16   83958183       84579702  NM_001286527        ATP2C2
29  chr16   83958183       84579702  NM_001318756        DNAAF1
30  chr16   83958183       84579702     NM_003791        MBTPS1
31  chr16   83958183       84579702     NM_019065        NECAB2
32  chr16   83958183       84579702     NM_020947         TLDC1
33  chr16   83958183       84579702     NM_172347         KCNG4
35  chr16   83958183       84579702     NM_182981        OSGIN1
36  chr17   48066263       48293448     NM_000088        COL1A1
37  chr17   48066263       48293448  NM_001199898          PDK2
40  chr17   48066263       48293448  NM_001257359        SAMD14
41  chr17   48066263       48293448     NM_002204         ITGA3
43  chr17   48066263       48293448     NM_005220          DLX3
44  chr17   48066263       48293448     NM_032595       PPP1R9B
45  chr17   48066263       48293448     NR_024193         HILS1
46  chr17   48066263       48293448     NR_038230     LOC284080
47  chr17   48066263       48293448     NR_110806  LOC101927230
48  chr17   48066263       48293448     NR_135553          SGCA
49   chr2   56572572       56766811  NM_001080433       CCDC85A,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr13   67237779       67364721     NM_020403        PCDH9
1   chr14   21752889       22065225  NM_001005465       OR10G3
2   chr14   21752889       22065225  NM_001163380        RAB2B
3   chr14   21752889       22065225  NM_001170629         CHD8
4   chr14   21752889       22065225  NM_001303523         TOX4
5   chr14   21752889       22065225     NM_007192      SUPT16H
6   chr14   21752889       22065225     NM_019852       METTL3
7   chr14   21752889       22065225     NM_020366      RPGRIP1
10  chr14   21752889       22065225     NR_002916       SNORD8
11  chr14   21752889       22065225     NR_003029       SNORD9
12  chr14   21752889       22065225     NR_111966        SALL2
14  chr14   27006759       27122131     NM_002515        NOVA1
16   chr2  110094228      110219324  NM_001099289       SH3RF3
17   chr3  192684866      193073621     NM_020386       HRASLS
18   chr3  192684866      193073621     NM_198505      ATP13A5
19   chr3  192684866      193073621     NR_026877      MGC2889
20   chr3  192684866      193073621     NR_046758  ATP13A5-AS1
21   chr4   69231486       69361115     NM_014058    TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   54155693       54778150     NM_000242          MBL2
1   chr10   54155693       54778150     NR_120641     LINC01468
3   chr10   89006591       89731922  NM_001126049          KLLN
4   chr10   89006591       89731922  NM_001178118        MINPP1
5   chr10   89006591       89731922  NM_001304718          PTEN
6   chr10   89006591       89731922  NM_001321968         ATAD1
7   chr10   89006591       89731922     NM_004670        PAPSS2
9   chr10   89006591       89731922     NR_024397    NUTM2A-AS1
10  chr10   89006591       89731922     NR_028492        CFL1P1
11  chr10   89006591       89731922     NR_029408     LINC00863
12  chr10   89006591       89731922     NR_039825       MIR4678
13  chr10   89006591       89731922     NR_046091     LINC00864
14  chr10   89006591       89731922     NR_075100        NUTM2D
16  chr11  102710333      102841517     NM_002422          MMP3
17  chr11  102710333      102841517     NM_002426         MMP12
18  chr11  102710333      102841517     NM_002427         MMP13
19  chr16   14979939       15175212  NM_001270767         NTAN1
20  chr16   14979939       15175212  NM_001285445        PDXDC1
25  chr16   14979939       15175212  NM_001301064          RRN3
27  chr16   14979939       15175212     NM_006985        NPIPA1
28  chr16   14979939       15175212     NM_014287         NOMO1
29  chr16   14979939       15175212     NR_036140     MIR3179-1
30  chr16   14979939       15175212     NR_036141     MIR3180-1
31  chr16   14979939       15175212     NR_036142     MIR3180-2
32  chr16   14979939       15175212     NR_103772  LOC100288162
33  chr16   14979939       15175212     NR_106970     MIR6511A3
34  chr16   14979939       15175212     NR_107060     MIR6770-2
35  chr16   14979939       15175212     NR_128713     MIR3670-4
36  chr18   24842317       25067220     NR_134589  LOC105372038
37   chr2  210212722      210392864  NM_001039538          MAP2
38  chr20   14799397       15046354     NM_080676       MACROD2
39  chr20   14799397       15046354     NR_037841   MACROD2-AS1
41   chr5  154208017      154463867  NM_001014990        MRPL22
42   chr5  154208017      154463867  NM_001099293         KIF4B
43   chr5  154208017      154463867  NM_001301074         CNOT8
46   chr5  154208017      154463867     NM_015465        GEMIN5
47   chr5  154208017      154463867     NM_032385        FAXDC2
48   chr5  154208017      154463867     NR_039667       MIR378H,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12760199       13249905  NM_001009611       PRAMEF4
1    chr1   12760199       13249905  NM_001010889       PRAMEF6
2    chr1   12760199       13249905  NM_001010890       PRAMEF9
3    chr1   12760199       13249905  NM_001012276       PRAMEF8
4    chr1   12760199       13249905  NM_001013407       PRAMEF5
5    chr1   12760199       13249905  NM_001013631      HNRNPCL1
6    chr1   12760199       13249905  NM_001080830      PRAMEF12
7    chr1   12760199       13249905  NM_001099850      PRAMEF18
8    chr1   12760199       13249905  NM_001100631      PRAMEF22
9    chr1   12760199       13249905  NM_001103170       AADACL3
10   chr1   12760199       13249905  NM_001136561      HNRNPCL2
11   chr1   12760199       13249905  NM_001146181      HNRNPCL3
12   chr1   12760199       13249905  NM_001146344      PRAMEF11
13   chr1   12760199       13249905  NM_001294139       PRAMEF1
14   chr1   12760199       13249905  NM_001302551      HNRNPCL4
15   chr1   12760199       13249905  NM_001306072      PRAMEF26
16   chr1   12760199       13249905  NM_001310134      PRAMEF25
18   chr1   12760199       13249905     NM_023014       PRAMEF2
19   chr1   12760199       13249905     NM_152290      C1orf158
20   chr1   12760199       13249905     NR_111945     PRAMEF36P
22  chr14   21811647       21928318  NM_001163380         RAB2B
23  chr14   21811647       21928318  NM_001170629          CHD8
24  chr14   21811647       21928318     NM_007192       SUPT16H
25  chr14   21811647       21928318     NM_020366       RPGRIP1
28  chr14   21811647       21928318     NR_002916        SNORD8
29  chr14   21811647       21928318     NR_003029        SNORD9
30  chr14   79541562       79774063  NM_001272020         NRXN3
33  chr14   79541562       79774063     NR_135159  LOC105370586,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241511319      241644147  NM_001282773          RGS7
1   chr14   21753350       22057035  NM_001005465        OR10G3
2   chr14   21753350       22057035  NM_001163380         RAB2B
3   chr14   21753350       22057035  NM_001170629          CHD8
4   chr14   21753350       22057035  NM_001303523          TOX4
5   chr14   21753350       22057035     NM_007192       SUPT16H
6   chr14   21753350       22057035     NM_019852        METTL3
7   chr14   21753350       22057035     NM_020366       RPGRIP1
10  chr14   21753350       22057035     NR_002916        SNORD8
11  chr14   21753350       22057035     NR_003029        SNORD9
12  chr14   21753350       22057035     NR_111966         SALL2
14  chr14   21916069       22022462  NM_001163380         RAB2B
15  chr14   21916069       22022462  NM_001303523          TOX4
16  chr14   21916069       22022462     NM_019852        METTL3
18  chr14   21916069       22022462     NR_111966         SALL2
20  chr16    8648373        8816277     NM_000663          ABAT
23  chr16    8648373        8816277     NM_024109       METTL22
24  chr20   14706058       14918234     NM_080676       MACROD2
25  chr20   14706058       14918234     NR_037841   MACROD2-AS1
27   chr5  150102372      150216284  NM_001135643         DCTN4
29   chr5  150102372      150216284     NM_032947         SMIM3
30   chr6  161783810      161954412     NM_013988         PARK2
31   chr6  161783810      161954412     NR_134594  LOC105378098
32   chr7    2736935        2881509  NM_001282440         GNA12
34   chr7    2736935        2881509  NM_001284355          AMZ1
38   chr8    7005962        7163261     NR_027000     LINC00965
41   chr8    7005962        7163261     NR_027423        FAM66B
42   chr8   50611648       50858094  NM_001287813         SNTG1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21940068       22183346  NM_001001912     OR4E2
1   chr14   21940068       22183346  NM_001005465    OR10G3
2   chr14   21940068       22183346  NM_001005466    OR10G2
3   chr14   21940068       22183346  NM_001163380     RAB2B
4   chr14   21940068       22183346  NM_001303523      TOX4
5   chr14   21940068       22183346  NM_001317107     OR4E1
6   chr14   21940068       22183346     NM_019852    METTL3
8   chr14   21940068       22183346     NR_111966     SALL2
10   chr7   64100309       64269766  NM_001160183    ZNF138
11   chr7   64100309       64269766  NM_001282360    ZNF107
14   chr7   64100309       64269766     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21860950       21965579  NM_001310148        NPIPB4
1   chr16   21860950       21965579     NM_003366        UQCRC2
2   chr18     639027        1392380  NM_001012716        TYMSOS
3   chr18     639027        1392380     NM_001071          TYMS
4   chr18     639027        1392380  NM_001099733       ADCYAP1
6   chr18     639027        1392380  NM_001126123        ENOSF1
7   chr18     639027        1392380  NM_001289036         CLUL1
11  chr18     639027        1392380     NM_005433          YES1
14  chr18     639027        1392380     NR_023927     LINC00470
15  chr20   14778388       15163612     NM_080676       MACROD2
16  chr20   14778388       15163612     NR_037841   MACROD2-AS1
18   chr9   41894635       42350057     NR_003670        FGF7P3
19   chr9   41894635       42350057     NR_015363         GLIDR
22   chr9   41894635       42350057     NR_126048  LOC102724238
23   chr9   41894635       42350057     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143704735      145012694  NM_001002810       PDE4DIP
3    chr1  143704735      145012694  NM_001123068       PPIAL4G
4    chr1  143704735      145012694  NM_001135789       PPIAL4C
9    chr1  143704735      145012694  NM_001277444         NBPF9
10   chr1  143704735      145012694  NM_001278267        NBPF20
11   chr1  143704735      145012694  NM_001287385        FAM72C
12   chr1  143704735      145012694  NM_001345942        FAM72D
17   chr1  143704735      145012694     NR_003242        PFN1P2
18   chr1  143704735      145012694     NR_024511     LINC00623
20   chr1  143704735      145012694     NR_102405         NBPF8
21   chr1  143704735      145012694     NR_104014     LINC01138
22   chr1  143704735      145012694     NR_111930  LOC100132057
23   chr1  143704735      145012694     NR_111953     LINC00869
25   chr1  153049939      153213448  NM_001010857         LELP1
26   chr1  153049939      153213448  NM_001014291        SPRR2G
27   chr1  153049939      153213448  NM_001014450        SPRR2F
28   chr1  153049939      153213448  NM_001024209        SPRR2E
29   chr1  153049939      153213448  NM_001195571          PRR9
30   chr1  153049939      153213448     NR_003062        SPRR2C
31   chr1  153049939      153213448     NR_110685  LOC101928009
32  chr11    6702159        6809071  NM_001004489        OR2AG1
33  chr11    6702159        6809071  NM_001004490        OR2AG2
34  chr11    6702159        6809071     NM_022061        MRPL17
35  chr11    6702159        6809071     NR_003945        GVINP1
36  chr15   28587137       28868051     NR_033351       GOLGA8F
38  chr15   28587137       28868051     NR_033353       GOLGA8G
40  chr15   28587137       28868051     NR_039734     MIR4509-3
42  chr19   34574361       35451816  NM_001007248        ZNF599
43  chr19   34574361       35451816  NM_001012320        ZNF302
44  chr19   34574361       35451816  NM_001025591       SCGB2B2
45  chr19   34574361       35451816  NM_001029997        ZNF181
46  chr19   34574361       35451816  NM_001080436          WTIP
47  chr19   34574361       35451816  NM_001099437         ZNF30
48  chr19   34574361       35451816  NM_001289789           GPI
51  chr19   34574361       35451816     NM_005499          UBA2
52  chr19   34574361       35451816     NM_014686      KIAA0355
53  chr19   34574361       35451816     NM_015578        LSM14A
54  chr19   34574361       35451816     NM_032346        PDCD2L
55  chr19   34574361       35451816     NM_175872        ZNF792
56  chr19   34574361       35451816     NR_027620      SCGB1B2P
57  chr19   34574361       35451816     NR_033982     LOC400685
58  chr19   34574361       35451816     NR_045208      SCGB2B3P
59  chr19   34574361       35451816     NR_046222     LINC00904
60  chr19   34574361       35451816     NR_110749     ZNF30-AS1
61   chr7   80118775       80322162     NM_000072          CD36
64   chr7   80118775       80322162  NM_001102386         GNAT3,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81462489       81571392  NM_001278495      NUTM2B
1   chr10   81462489       81571392     NR_120611  NUTM2B-AS1
4   chr14   21946835       22047910  NM_001005465      OR10G3
5   chr14   21946835       22047910  NM_001303523        TOX4
6   chr14   21946835       22047910     NM_019852      METTL3
7   chr14   21946835       22047910     NR_111966       SALL2
9   chr16   68786134       69296684  NM_001039690       CHTF8
11  chr16   68786134       69296684  NM_001199280        HAS3
12  chr16   68786134       69296684  NM_001317184        CDH1
14  chr16   68786134       69296684     NM_006750       SNTB2
15  chr16   68786134       69296684     NM_024562      TANGO6
16  chr16   68786134       69296684     NM_032830        UTP4
18  chr17    5535454        5969738     NR_040000   LOC339166
19   chr7   19657232       19789033  NM_001002926     TWISTNB
20   chr7   19657232       19789033     NM_152774     TMEM196
21   chr7   19657232       19789033     NR_036101     MIR3146,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11    4251508        4390377  NM_001005161        OR52B4
1  chr11   20767396       20905129  NM_001288713         NELL1
2  chr15   28811206       29108866  NM_001282468       GOLGA8M
3  chr15   28811206       29108866     NR_026589       WHAMMP2
4  chr15   28811206       29108866     NR_036443       HERC2P9
5  chr15   28811206       29108866     NR_036475  LOC100289656
6  chr15   28811206       29108866     NR_037599     PDCD6IPP2
7  chr15   28811206       29108866     NR_047567     GOLGA6L7P
8  chr22   20557905       20676676     NR_136569     LOC729461
9  chr22   20557905       20676676     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21704692       21895859  NM_001170629          CHD8
1   chr14   21704692       21895859     NM_007192       SUPT16H
2   chr14   21704692       21895859     NM_020366       RPGRIP1
4   chr14   21704692       21895859     NM_031314        HNRNPC
5   chr14   21704692       21895859     NR_002916        SNORD8
6   chr14   21704692       21895859     NR_003029        SNORD9
7   chr14   75126411       75243118  NM_001039479         AREL1
8   chr14   75126411       75243118  NM_001318508          FCF1
10  chr14   75126411       75243118     NM_019589         YLPM1
11   chr7  110645984      113195904  NM_001099658         LRRN3
12   chr7  110645984      113195904  NM_001134468        LSMEM1
13   chr7  110645984      113195904  NM_001146266         GPR85
15   chr7  110645984      113195904  NM_001197079         IFRD1
17   chr7  110645984      113195904  NM_001244606        IMMP2L
18   chr7  110645984      113195904  NM_001287497       TMEM168
20   chr7  110645984      113195904     NM_014705         DOCK4
22   chr7  110645984      113195904     NM_021994        ZNF277
24   chr7  110645984      113195904     NM_152556          BMT2
26   chr7  110645984      113195904     NR_024412     LINC00998
27   chr7  110645984      113195904     NR_103806     DOCK4-AS1
28   chr7  110645984      113195904     NR_110158  LOC101928012
29   chr7  110645984      113195904     NR_110160  LOC100996249
30   chr7  110645984      113195904     NR_110162        HRAT17,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142510749      142769894     NR_046228   ANKRD20A12P
1   chr15   28564201       29038207  NM_001282468       GOLGA8M
2   chr15   28564201       29038207     NM_004667         HERC2
3   chr15   28564201       29038207     NR_026589       WHAMMP2
4   chr15   28564201       29038207     NR_033351       GOLGA8F
6   chr15   28564201       29038207     NR_033353       GOLGA8G
8   chr15   28564201       29038207     NR_036443       HERC2P9
9   chr15   28564201       29038207     NR_036475  LOC100289656
10  chr15   28564201       29038207     NR_037599     PDCD6IPP2
11  chr15   28564201       29038207     NR_039734     MIR4509-3
13   chr3  155957606      156089398  NM_001308217        KCNAB1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21804052       21936928  NM_001163380     RAB2B
1  chr14   21804052       21936928  NM_001170629      CHD8
2  chr14   21804052       21936928     NM_007192   SUPT16H
3  chr14   21804052       21936928     NM_020366   RPGRIP1
6  chr14   21804052       21936928     NR_002916    SNORD8
7  chr14   21804052       21936928     NR_003029    SNORD9
8  chr14   42228483       42354650  NM_001346175     LRFN5,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18333643       18485575  NM_001282511        NPIPA8
1  chr16   18333643       18485575     NR_103772  LOC100288162
2  chr16   18333643       18485575     NR_106971     MIR6511A4
3  chr16   18333643       18485575     NR_107060     MIR6770-2
4  chr16   68556888       68674369  NM_001305204         ZFP90
6   chr4   69204469       69487308  NM_001031732        YTHDC1
7   chr4   69204469       69487308     NM_001077       UGT2B17
8   chr4   69204469       69487308     NM_014058     TMPRSS11E
9   chr5   23865413       24014987     NR_131245       C5orf17,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   20936602       24370769     NM_000415          IAPP
1   chr12   20936602       24370769  NM_001009562       SLCO1B7
2   chr12   20936602       24370769  NM_001039481         ETNK1
3   chr12   20936602       24370769  NM_001174097          LDHB
4   chr12   20936602       24370769  NM_001261415          SOX5
5   chr12   20936602       24370769  NM_001286177         C2CD5
9   chr12   20936602       24370769     NM_003034       ST8SIA1
10  chr12   20936602       24370769     NM_004982         KCNJ8
11  chr12   20936602       24370769     NM_005691         ABCC9
12  chr12   20936602       24370769     NM_006446       SLCO1B1
13  chr12   20936602       24370769     NM_016072        GOLT1B
15  chr12   20936602       24370769     NM_018686          CMAS
16  chr12   20936602       24370769     NM_019844       SLCO1B3
18  chr12   20936602       24370769     NM_021094       SLCO1A2
19  chr12   20936602       24370769     NM_021957          GYS2
20  chr12   20936602       24370769     NM_024854       PYROXD1
21  chr12   20936602       24370769     NM_030572           SPX
22  chr12   20936602       24370769     NM_032941         RECQL
26  chr12   20936602       24370769     NR_030625        MIR920
27  chr12   20936602       24370769     NR_120471  LOC101928441
28  chr12   20936602       24370769     NR_135030  LOC105369691
32  chr12  130243300      130400008     NM_133448      TMEM132D
33  chr15   43713573       43844219  NM_001141979       TP53BP1
34  chr15   43713573       43844219  NM_001190214       PPIP5K1
35  chr15   43713573       43844219     NM_002373         MAP1A
38  chr16   18390375       18494840  NM_001282511        NPIPA8
39  chr16   18390375       18494840     NR_103772  LOC100288162
40  chr16   18390375       18494840     NR_106971     MIR6511A4
41  chr16   18390375       18494840     NR_107060     MIR6770-2
42   chr4   69151380       69495431  NM_001031732        YTHDC1
43   chr4   69151380       69495431     NM_001077       UGT2B17
44   chr4   69151380       69495431     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16271664       16418918  NM_001004067         NOMO3
1   chr16   16271664       16418918  NM_001079528         ABCC6
3   chr16   16271664       16418918     NR_036140     MIR3179-1
4   chr16   16271664       16418918     NR_036141     MIR3180-1
5   chr16   16271664       16418918     NR_036142     MIR3180-2
6   chr16   16271664       16418918     NR_036447        PKD1P1
7   chr16   16271664       16418918     NR_103772  LOC100288162
8   chr16   16271664       16418918     NR_106766     MIR6511A1
9   chr16   16271664       16418918     NR_128713     MIR3670-4
10  chr16   21492290       21611180  NM_001077180        METTL9
12  chr16   21492290       21611180     NR_002594      SLC7A5P2
13  chr16   21492290       21611180     NR_027155        SMG1P3
14  chr16   21492290       21611180     NR_049833     MIR3680-2
15  chr16   21492290       21611180     NR_110930  LOC101927814
16  chr16   31886689       32177669  NM_001265588        ZNF267
17  chr16   31886689       32177669     NR_135178  LOC102723753
18  chr19   33135026       33640610  NM_001105570        NUDT19
19  chr19   33135026       33640610  NM_001110822        TDRD12
20  chr19   33135026       33640610  NM_001300978        FAAP24
21  chr19   33135026       33640610     NM_014270        SLC7A9
22  chr19   33135026       33640610     NM_032139       ANKRD27
23  chr19   33135026       33640610     NM_032816         CEP89
24  chr19   33135026       33640610     NM_033103         RHPN2
25  chr19   33135026       33640610     NM_173479         WDR88
26  chr19   33135026       33640610     NM_207391        RGS9BP
27  chr19   33135026       33640610     NR_135270       GPATCH1
28   chr4  169188598      169562301  NM_001012967        DDX60L
29   chr4  169188598      169562301  NM_001166108         PALLD
32   chr4  169188598      169562301     NM_017631         DDX60
33   chr4  188293520      188395186     NR_038931     LOC339975,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  189977818      190124629  NM_001317188       BRINP3
2   chr14   21779132       21958629  NM_001163380        RAB2B
3   chr14   21779132       21958629  NM_001170629         CHD8
4   chr14   21779132       21958629  NM_001303523         TOX4
5   chr14   21779132       21958629     NM_007192      SUPT16H
6   chr14   21779132       21958629     NM_020366      RPGRIP1
9   chr14   21779132       21958629     NR_002916       SNORD8
10  chr14   21779132       21958629     NR_003029       SNORD9
11  chr20   14672566       14821313     NM_080676      MACROD2
12  chr20   14901935       15233781  NM_001033087      MACROD2
14  chr20   14901935       15233781     NR_037841  MACROD2-AS1
16   chr4  165914988      166052375  NM_001100389      TMEM192
17   chr4  165914988      166052375     NM_152620       TRIM60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   55825466       56099188  NM_001003750         OR8I2
1   chr11   55825466       56099188  NM_001004058         OR8K5
2   chr11   55825466       56099188  NM_001004064         OR8J3
3   chr11   55825466       56099188  NM_001004745         OR5T1
4   chr11   55825466       56099188  NM_001004746         OR5T2
5   chr11   55825466       56099188  NM_001004747         OR5T3
6   chr11   55825466       56099188  NM_001005199         OR8H1
7   chr11   55825466       56099188  NM_001005200         OR8H2
8   chr11   55825466       56099188  NM_001005201         OR8H3
9   chr11   55825466       56099188  NM_001005202         OR8K3
10  chr11   55825466       56099188  NM_001005492         OR5J2
11  chr12   85428644       86061118  NM_001079910        LRRIQ1
12  chr12   85428644       86061118  NM_001100917       TSPAN19
13  chr12   85428644       86061118     NM_006982          ALX1
14  chr13   25285386       25389766  NM_001184993         RNF17
15  chr13   25285386       25389766  NM_001185085        ATP12A
16  chr14   21676960       23347606  NM_001001912         OR4E2
17  chr14   21676960       23347606  NM_001005465        OR10G3
18  chr14   21676960       23347606  NM_001005466        OR10G2
19  chr14   21676960       23347606  NM_001126105        SLC7A7
21  chr14   21676960       23347606  NM_001163380         RAB2B
22  chr14   21676960       23347606  NM_001170629          CHD8
23  chr14   21676960       23347606  NM_001303523          TOX4
24  chr14   21676960       23347606  NM_001317107         OR4E1
25  chr14   21676960       23347606  NM_001318870        MRPL52
26  chr14   21676960       23347606  NM_001329226         LRP10
27  chr14   21676960       23347606     NM_001344          DAD1
28  chr14   21676960       23347606     NM_004995         MMP14
29  chr14   21676960       23347606     NM_005015         OXA1L
30  chr14   21676960       23347606     NM_007192       SUPT16H
31  chr14   21676960       23347606     NM_019852        METTL3
32  chr14   21676960       23347606     NM_020366       RPGRIP1
34  chr14   21676960       23347606     NM_022060         ABHD4
35  chr14   21676960       23347606     NM_031314        HNRNPC
37  chr14   21676960       23347606     NR_002916        SNORD8
38  chr14   21676960       23347606     NR_003029        SNORD9
40  chr14   21676960       23347606     NR_111966         SALL2
42  chr15   30219103       30351469  NM_001301025          TJP1
43   chr2   51652640       51800357     NR_135237     LOC730100
44  chr22   19895977       20119886     NM_000754          COMT
47  chr22   19895977       20119886  NM_001190326         DGCR8
48  chr22   19895977       20119886  NM_001278639        RANBP1
51  chr22   19895977       20119886  NM_001282512        TXNRD2
52  chr22   19895977       20119886  NM_001283116        TANGO2
55  chr22   19895977       20119886     NM_001670         ARVCF
58  chr22   19895977       20119886     NM_013373        ZDHHC8
59  chr22   19895977       20119886     NM_022727        TRMT2A
60  chr22   19895977       20119886     NR_029706        MIR185
61  chr22   19895977       20119886     NR_031706       MIR1306
62  chr22   19895977       20119886     NR_037412       MIR3618
63  chr22   19895977       20119886     NR_039918       MIR4761
64  chr22   19895977       20119886     NR_106874       MIR6816
65   chr4   88601852       88763035  NM_001184694          MEPE
67   chr4   88601852       88763035     NM_004967          IBSP
69   chr7   19720318       19962868  NM_001002926       TWISTNB
70   chr7   19720318       19962868     NM_152774       TMEM196
71   chr7   19720318       19962868     NR_036101       MIR3146
72   chr7   19720318       19962868     NR_110114  LOC101927668
73   chr7  110683207      110839801  NM_001099658         LRRN3
74   chr7  110683207      110839801  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21821027       22416494  NM_001001912      OR4E2
1   chr14   21821027       22416494  NM_001005465     OR10G3
2   chr14   21821027       22416494  NM_001005466     OR10G2
3   chr14   21821027       22416494  NM_001163380      RAB2B
4   chr14   21821027       22416494  NM_001170629       CHD8
5   chr14   21821027       22416494  NM_001303523       TOX4
6   chr14   21821027       22416494  NM_001317107      OR4E1
7   chr14   21821027       22416494     NM_007192    SUPT16H
8   chr14   21821027       22416494     NM_019852     METTL3
11  chr14   21821027       22416494     NR_002916     SNORD8
12  chr14   21821027       22416494     NR_003029     SNORD9
13  chr14   21821027       22416494     NR_111966      SALL2
15  chr14   26960421       27090595     NM_002515      NOVA1
17  chr14   45481531       45620709  NM_001308120    FAM179B
18  chr14   45481531       45620709  NM_001308133      FANCM
20  chr14   45481531       45620709     NM_002013      FKBP3
21  chr14   45481531       45620709     NM_017922     PRPF39
22  chr14   45481531       45620709     NR_003691   SNORD127
23  chr17   70923369       71033032     NM_139177   SLC39A11
24  chr22   32299849       32410786  NM_001242896     DEPDC5
26  chr22   32299849       32410786  NM_001302819   C22orf24
27  chr22   32299849       32410786     NM_003405      YWHAH
30   chr4   72981771       73128250     NM_004885     NPFFR2
32   chr8  111933166      112149299     NR_125416  LINC01608
34   chr8  111933166      112149299     NR_125418  LINC01609,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   48329605       48551183  NM_001004702        OR4C3
1   chr11   48329605       48551183  NM_001005512       OR4A47
2   chr11   48329605       48551183  NM_001005513       OR4C45
3   chr19   47804376       48088919  NM_001009813        MEIS3
4   chr19   47804376       48088919  NM_001271749        C5AR2
6   chr19   47804376       48088919  NM_001277075       ZNF541
7   chr19   47804376       48088919  NM_001291296         KPTN
10  chr19   47804376       48088919     NM_001736        C5AR1
11  chr19   47804376       48088919     NM_014681        DHX34
12  chr19   47804376       48088919     NM_015063       SLC8A2
14  chr19   47804376       48088919     NR_038452     NAPA-AS1
15  chr19   47804376       48088919     NR_038457         NAPA
16  chr20   14798994       14903066     NM_080676      MACROD2
17  chr20   14798994       14903066     NR_037841  MACROD2-AS1
19  chr22   17254054       17497332  NM_001037814         GAB4
20  chr22   17254054       17497332     NM_175878         XKR3
21  chr22   17254054       17497332     NR_003607      HSFY1P1
22   chr4    8584964        9102226  NM_001014447          CPZ
23   chr4    8584964        9102226  NM_001040071    LOC650293
24   chr4    8584964        9102226  NM_001306142         HMX1
26   chr4    8584964        9102226     NM_080819        GPR78
28   chr9   39127918       39235292     NM_033655      CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   18520714       18743481  NM_001004060      NOMO2
1  chr16   18520714       18743481     NR_003569    ABCC6P1
2  chr16   29497998       29776637  NM_001030288        SPN
3  chr16   29497998       29776637  NM_001318249       QPRT
5  chr16   29497998       29776637     NM_175900   C16orf54
6  chr16   29497998       29776637     NR_049833  MIR3680-2
7  chr16   29497998       29776637     NR_135305     SMG1P2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68079560       68247464  NM_001127384        CTNNA3
2   chr16   16402501       16504370  NM_001282511        NPIPA8
3   chr16   16402501       16504370     NR_036141     MIR3180-1
4   chr16   16402501       16504370     NR_036142     MIR3180-2
5   chr16   16402501       16504370     NR_036447        PKD1P1
6   chr16   16402501       16504370     NR_103772  LOC100288162
7   chr16   16402501       16504370     NR_106766     MIR6511A1
8   chr16   16402501       16504370     NR_106971     MIR6511A4
9   chr16   16402501       16504370     NR_107060     MIR6770-2
10   chr3  192371189      192837449     NM_004113         FGF12
11   chr3  192371189      192837449     NM_178496        MB21D2
12   chr5   99511610      100241806     NM_005668       ST8SIA4
14   chr5   99511610      100241806     NM_198507       FAM174A
15   chr5   99511610      100241806     NR_027503  LOC100133050
16   chr5   99511610      100241806     NR_031686       MIR548P
17   chr5  109573138      110069829  NM_001039763       TMEM232
18   chr5  109573138      110069829     NR_031644      MIR548F3
19   chr7   69310088       69484549  NM_001127231         AUTS2,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0    chr1   13024813       13228825  NM_001013407            PRAMEF5
1    chr1   13024813       13228825  NM_001099850           PRAMEF18
2    chr1   13024813       13228825  NM_001100631           PRAMEF22
3    chr1   13024813       13228825  NM_001136561           HNRNPCL2
4    chr1   13024813       13228825  NM_001306072           PRAMEF26
5    chr1   13024813       13228825  NM_001310134           PRAMEF25
6    chr1   13024813       13228825     NR_111945          PRAMEF36P
8   chr11    4158641        4259685     NM_001033               RRM1
10  chr11    4158641        4259685     NR_047550       LOC100506082
11  chr11   89134781       89373346  NM_001143837               NOX4
17  chr15   28618628       28733839     NR_033351            GOLGA8F
18  chr15   28618628       28733839     NR_033353            GOLGA8G
19  chr15   28618628       28733839     NR_039734          MIR4509-3
20   chr2   51219790       51405714  NM_001330079              NRXN1
23   chr2   51219790       51405714     NR_135237          LOC730100
24  chr22   17062747       17653902  NM_001037814               GAB4
25  chr22   17062747       17653902  NM_001163079              CECR6
26  chr22   17062747       17653902  NM_001289905             IL17RA
27  chr22   17062747       17653902     NM_014406             CCT8L2
28  chr22   17062747       17653902     NM_017829              CECR5
31  chr22   17062747       17653902     NM_175878               XKR3
32  chr22   17062747       17653902     NR_001591             TPTEP1
33  chr22   17062747       17653902     NR_003607            HSFY1P1
34  chr22   17062747       17653902     NR_015352              CECR7
35  chr22   17062747       17653902     NR_024482          CECR5-AS1
36  chr22   17062747       17653902     NR_040115  ANKRD62P1-PARP4P3
37  chr22   17062747       17653902     NR_103793       LOC100996342
38  chr22   17062747       17653902     NR_134584       LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21833754       22007765  NM_001163380         RAB2B
1   chr14   21833754       22007765  NM_001170629          CHD8
2   chr14   21833754       22007765  NM_001303523          TOX4
3   chr14   21833754       22007765     NM_007192       SUPT16H
4   chr14   21833754       22007765     NM_019852        METTL3
7   chr14   21833754       22007765     NR_002916        SNORD8
8   chr14   21833754       22007765     NR_003029        SNORD9
9   chr14   21833754       22007765     NR_111966         SALL2
11  chr16   68579247       68824984  NM_001305204         ZFP90
13  chr16   68579247       68824984  NM_001317184          CDH1
14  chr16   68579247       68824984  NM_001317195          CDH3
15  chr16   68579247       68824984     NR_106988     MIR7641-2
16   chr2  184611614      186058398     NM_194250       ZNF804A
17   chr2  184611614      186058398     NR_039638     MIR548AE1
18   chr2  184611614      186058398     NR_136319  LOC105373782
19   chr5  154212194      154343164  NM_001014990        MRPL22
20   chr5  154212194      154343164  NM_001301074         CNOT8
23   chr5  154212194      154343164     NM_015465        GEMIN5
24   chr5  154212194      154343164     NM_032385        FAXDC2
25   chr9   28499943       29198653  NM_001258282        LINGO2
27   chr9   28499943       29198653     NR_030597        MIR876
28   chr9   28499943       29198653     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  100630854      102223484     NM_000392      ABCC2
1   chr10  100630854      102223484  NM_001001342    BLOC1S2
2   chr10  100630854      102223484  NM_001100626     ERLIN1
3   chr10  100630854      102223484  NM_001166244      HPSE2
4   chr10  100630854      102223484  NM_001253837     PKD2L1
5   chr10  100630854      102223484     NM_001278       CHUK
8   chr10  100630854      102223484  NM_001303404    CWF19L1
9   chr10  100630854      102223484     NM_001308       CPN1
10  chr10  100630854      102223484  NM_001318326      DNMBP
12  chr10  100630854      102223484  NM_001320974      COX15
14  chr10  100630854      102223484     NM_002079       GOT1
15  chr10  100630854      102223484     NM_003393      WNT8B
16  chr10  100630854      102223484     NM_005063        SCD
19  chr10  100630854      102223484     NM_015960       CUTC
20  chr10  100630854      102223484     NM_020348      CNNM1
21  chr10  100630854      102223484     NM_020354     ENTPD7
22  chr10  100630854      102223484     NM_031212   SLC25A28
23  chr10  100630854      102223484     NM_145285     NKX2-3
24  chr10  100630854      102223484     NR_002954    SNORA12
25  chr10  100630854      102223484     NR_024130  DNMBP-AS1
26  chr10  100630854      102223484     NR_026762   OLMALINC
27  chr10  100630854      102223484     NR_106762    MIR6507
28  chr10  100630854      102223484     NR_120618  LINC01475
29  chr12   71466156       71947900  NM_001277227       LGR5
30  chr12   71466156       71947900     NM_004616     TSPAN8
31  chr14   21929386       22164109  NM_001001912      OR4E2
32  chr14   21929386       22164109  NM_001005465     OR10G3
33  chr14   21929386       22164109  NM_001005466     OR10G2
34  chr14   21929386       22164109  NM_001163380      RAB2B
35  chr14   21929386       22164109  NM_001303523       TOX4
36  chr14   21929386       22164109  NM_001317107      OR4E1
37  chr14   21929386       22164109     NM_019852     METTL3
39  chr14   21929386       22164109     NR_111966      SALL2
41   chr2   69566797       69774153  NM_001244710      GFPT1
42   chr2   69566797       69774153     NM_014911       AAK1
43   chr2   69566797       69774153     NM_015700       NFU1
44   chr2   69566797       69774153     NR_003705   SNORA36C
45   chr7  153838697      153964895  NM_001039350       DPP6,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67882240       68021126  NM_001127384     CTNNA3
2   chr14   21887852       22091864  NM_001005465     OR10G3
3   chr14   21887852       22091864  NM_001163380      RAB2B
4   chr14   21887852       22091864  NM_001170629       CHD8
5   chr14   21887852       22091864  NM_001303523       TOX4
6   chr14   21887852       22091864     NM_019852     METTL3
9   chr14   21887852       22091864     NR_111966      SALL2
11   chr4   69250609       69846076     NM_001075    UGT2B10
12   chr4   69250609       69846076     NM_001076    UGT2B15
13   chr4   69250609       69846076     NM_001077    UGT2B17
14   chr4   69250609       69846076     NM_014058  TMPRSS11E
15   chr4   69250609       69846076     NM_024743     UGT2A3
16   chr6  131023729      131201871  NM_001135554    EPB41L2
17   chr6  131023729      131201871  NM_001195597      SMLR1
19   chr7  110554695      110732705  NM_001099658      LRRN3
20   chr7  110554695      110732705  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21941017       22143532  NM_001001912     OR4E2
1   chr14   21941017       22143532  NM_001005465    OR10G3
2   chr14   21941017       22143532  NM_001005466    OR10G2
3   chr14   21941017       22143532  NM_001163380     RAB2B
4   chr14   21941017       22143532  NM_001303523      TOX4
5   chr14   21941017       22143532  NM_001317107     OR4E1
6   chr14   21941017       22143532     NM_019852    METTL3
8   chr14   21941017       22143532     NR_111966     SALL2
10   chr4   28443791       28925038     NR_036237   MIR4275
11   chr7  109576840      109750740     NR_003024   EIF3IP1
12   chr9    9847087       10195008     NM_002839     PTPRD
13   chr9   28623809       28984624  NM_001258282    LINGO2
15   chr9   28623809       28984624     NR_030597    MIR876
16   chr9   28623809       28984624     NR_030618    MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    2054145        2201544     NR_040253     LINC00700
1   chr10    2054145        2201544     NR_106720       MIR6072
2   chr11   48323551       48841843  NM_001004702         OR4C3
3   chr11   48323551       48841843  NM_001004725         OR4S1
4   chr11   48323551       48841843  NM_001005512        OR4A47
5   chr11   48323551       48841843  NM_001005513        OR4C45
6   chr13   40310298       40453423  NM_001145079          COG6
8   chr14   21771498       21988717  NM_001163380         RAB2B
9   chr14   21771498       21988717  NM_001170629          CHD8
10  chr14   21771498       21988717  NM_001303523          TOX4
11  chr14   21771498       21988717     NM_007192       SUPT16H
12  chr14   21771498       21988717     NM_019852        METTL3
13  chr14   21771498       21988717     NM_020366       RPGRIP1
16  chr14   21771498       21988717     NR_002916        SNORD8
17  chr14   21771498       21988717     NR_003029        SNORD9
18   chr3  117888704      118239696     NR_135547  LOC105374060
19   chr7   16738228       16844472  NM_001159767          BZW2
20   chr7   16738228       16844472     NM_006408          AGR2
21   chr7   16738228       16844472     NM_014399       TSPAN13,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143369924      144041453  NM_001123068       PPIAL4G
1    chr1  143369924      144041453  NM_001287385        FAM72C
2    chr1  143369924      144041453  NM_001345942        FAM72D
6    chr1  143369924      144041453     NR_104014     LINC01138
7    chr1  143369924      144041453     NR_106967       MIR6077
8    chr1  143369924      144041453     NR_111930  LOC100132057
10  chr13   80781592       81787789  NM_001318536         SPRY2
13  chr13   80781592       81787789     NR_125770     LINC00377,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    5137467        5359607  NM_001253908        AKR1C3
2   chr10    5137467        5359607     NM_001818        AKR1C4
4   chr10    5137467        5359607     NR_027916       AKR1C8P
5   chr14   21660191       21801914     NM_020366       RPGRIP1
6   chr14   21660191       21801914     NM_031314        HNRNPC
7   chr14   21660191       21801914     NR_038970     LINC00641
9   chr16   14692257       15053072  NM_001134477          PARN
10  chr16   14692257       15053072  NM_001277323        NPIPA3
12  chr16   14692257       15053072  NM_001277324        NPIPA2
14  chr16   14692257       15053072     NM_006985        NPIPA1
15  chr16   14692257       15053072     NM_014287         NOMO1
16  chr16   14692257       15053072     NM_016561          BFAR
17  chr16   14692257       15053072     NR_023387       ABCC6P2
18  chr16   14692257       15053072     NR_036140     MIR3179-1
19  chr16   14692257       15053072     NR_036141     MIR3180-1
20  chr16   14692257       15053072     NR_036142     MIR3180-2
21  chr16   14692257       15053072     NR_103772  LOC100288162
22  chr16   14692257       15053072     NR_106970     MIR6511A3
23  chr16   14692257       15053072     NR_107060     MIR6770-2
24  chr16   14692257       15053072     NR_128713     MIR3670-4
25  chr16   14692257       15053072     NR_133651       PLA2G10
26   chr7  108440217      108601509  NM_001024607       C7orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21773700       21953684  NM_001163380         RAB2B
1   chr14   21773700       21953684  NM_001170629          CHD8
2   chr14   21773700       21953684  NM_001303523          TOX4
3   chr14   21773700       21953684     NM_007192       SUPT16H
4   chr14   21773700       21953684     NM_020366       RPGRIP1
7   chr14   21773700       21953684     NR_002916        SNORD8
8   chr14   21773700       21953684     NR_003029        SNORD9
9    chr2   36297137       36766706     NM_016441         CRIM1
10   chr2   36297137       36766706     NR_037631  LOC100288911
11   chr6   22057537       22226813     NR_015410        CASC15
12   chr6   22057537       22226813     NR_034143         NBAT1
13   chr8   16002477       16320866     NM_002445          MSR1
15   chr9   41866502       42133443     NR_003670        FGF7P3
16   chr9   41866502       42133443     NR_015363         GLIDR
19   chr9   41866502       42133443     NR_126048  LOC102724238
20   chr9   41866502       42133443     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143681212      145429733  NM_001002810       PDE4DIP
3    chr1  143681212      145429733  NM_001123068       PPIAL4G
4    chr1  143681212      145429733  NM_001135789       PPIAL4C
9    chr1  143681212      145429733  NM_001277444         NBPF9
10   chr1  143681212      145429733  NM_001278267        NBPF20
11   chr1  143681212      145429733  NM_001287385        FAM72C
12   chr1  143681212      145429733  NM_001302371        NBPF10
13   chr1  143681212      145429733  NM_001345942        FAM72D
16   chr1  143681212      145429733     NM_004892        SEC22B
18   chr1  143681212      145429733     NM_145277          HFE2
19   chr1  143681212      145429733     NM_203458      NOTCH2NL
21   chr1  143681212      145429733     NR_003242        PFN1P2
22   chr1  143681212      145429733     NR_024511     LINC00623
24   chr1  143681212      145429733     NR_102405         NBPF8
25   chr1  143681212      145429733     NR_104014     LINC01138
26   chr1  143681212      145429733     NR_104217       NBPF25P
27   chr1  143681212      145429733     NR_111930  LOC100132057
28   chr1  143681212      145429733     NR_111953     LINC00869
29   chr1  143681212      145429733     NR_125967  LOC101928979
31  chr10  110924425      112152767  NM_001008541          MXI1
32  chr10  110924425      112152767     NM_001121          ADD3
35  chr10  110924425      112152767  NM_001324128       XPNPEP1
37  chr10  110924425      112152767     NM_005871        SMNDC1
40  chr10  110924425      112152767     NR_038943      ADD3-AS1
41  chr14   21810830       21939866  NM_001163380         RAB2B
42  chr14   21810830       21939866  NM_001170629          CHD8
43  chr14   21810830       21939866     NM_007192       SUPT16H
44  chr14   21810830       21939866     NM_020366       RPGRIP1
47  chr14   21810830       21939866     NR_002916        SNORD8
48  chr14   21810830       21939866     NR_003029        SNORD9
49  chr14   47812800       47956225  NM_001113498         MDGA2
50  chr16   68595633       68734794  NM_001305204         ZFP90
52  chr16   68595633       68734794  NM_001317195          CDH3
53   chr2   51715258       51951207     NR_135237     LOC730100
54   chr3    4082532        4367799  NM_001243723        SETMAR,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11    4216353        4390242  NM_001005161         OR52B4
1   chr11    4216353        4390242     NR_047550   LOC100506082
2   chr11   40288647       40504271  NM_001258419         LRRC4C
4   chr14   21848821       22011427  NM_001163380          RAB2B
5   chr14   21848821       22011427  NM_001170629           CHD8
6   chr14   21848821       22011427  NM_001303523           TOX4
7   chr14   21848821       22011427     NM_007192        SUPT16H
8   chr14   21848821       22011427     NM_019852         METTL3
11  chr14   21848821       22011427     NR_002916         SNORD8
12  chr14   21848821       22011427     NR_003029         SNORD9
13  chr14   21848821       22011427     NR_111966          SALL2
15  chr16   28696989       30015501  NM_001014989            LAT
16  chr16   28696989       30015501  NM_001014999          SLX1A
17  chr16   28696989       30015501  NM_001017390        SULT1A4
18  chr16   28696989       30015501  NM_001030288            SPN
19  chr16   28696989       30015501  NM_001031827          BOLA2
20  chr16   28696989       30015501  NM_001083613        TMEM219
21  chr16   28696989       30015501  NM_001114099         SEZ6L2
22  chr16   28696989       30015501  NM_001142448          SPNS1
23  chr16   28696989       30015501  NM_001145795          SH2B1
25  chr16   28696989       30015501  NM_001199142          EIF3C
26  chr16   28696989       30015501  NM_001256269          KIF22
28  chr16   28696989       30015501  NM_001256443          PRRT2
29  chr16   28696989       30015501  NM_001276275            MAZ
30  chr16   28696989       30015501  NM_001286075         ATP2A1
32  chr16   28696989       30015501  NM_001286585          CDIPT
33  chr16   28696989       30015501  NM_001287251         NPIPB9
34  chr16   28696989       30015501  NM_001293204            MVP
35  chr16   28696989       30015501  NM_001304562         INO80E
37  chr16   28696989       30015501  NM_001310137        NPIPB11
..    ...        ...            ...           ...            ...
46  chr16   28696989       30015501     NM_003609         HIRIP3
48  chr16   28696989       30015501     NM_004783          TAOK2
53  chr16   28696989       30015501     NM_024516          PAGR1
54  chr16   28696989       30015501     NM_024816         RABEP2
55  chr16   28696989       30015501     NM_032815       NFATC2IP
56  chr16   28696989       30015501     NM_148416         ATXN2L
57  chr16   28696989       30015501     NM_152338           ZG16
58  chr16   28696989       30015501     NM_175900       C16orf54
59  chr16   28696989       30015501     NM_178863         KCTD13
60  chr16   28696989       30015501     NM_181718         ASPHD1
61  chr16   28696989       30015501     NR_002454      LOC606724
62  chr16   28696989       30015501     NR_002556      LOC388242
63  chr16   28696989       30015501     NR_002939        SNX29P2
64  chr16   28696989       30015501     NR_003369         RRN3P2
65  chr16   28696989       30015501     NR_015396      CDIPT-AS1
67  chr16   28696989       30015501     NR_037608  SLX1A-SULT1A3
68  chr16   28696989       30015501     NR_039742        MIR4517
69  chr16   28696989       30015501     NR_039872        MIR4721
70  chr16   28696989       30015501     NR_046287     ATP2A1-AS1
71  chr16   28696989       30015501     NR_049833      MIR3680-2
72  chr16   28696989       30015501     NR_107058      MIR6862-2
75  chr16   28696989       30015501     NR_135305         SMG1P2
76  chr16   28696989       30015501     NR_135312         SMG1P6
78   chr2   35649656       36383618     NR_039629       MIR548AD
79   chr2  212916045      213040685  NM_001042599          ERBB4
80   chr2  234395271      234536707     NM_018218          USP40
81   chr2  234395271      234536707     NM_019076         UGT1A8
82  chr20   21973720       22295611     NR_038394      LINC01432
83  chr20   21973720       22295611     NR_110615      LINC01427
84   chr4   69244903       69356238     NM_014058      TMPRSS11E

[65 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10    1571507        1676097     NM_018702      ADARB2
1   chr10    1571507        1676097     NR_033387  ADARB2-AS1
2   chr10  117311811      117562547     NM_207303      ATRNL1
3   chr14   21895612       22015322  NM_001163380       RAB2B
4   chr14   21895612       22015322  NM_001170629        CHD8
5   chr14   21895612       22015322  NM_001303523        TOX4
6   chr14   21895612       22015322     NM_019852      METTL3
9   chr14   21895612       22015322     NR_111966       SALL2
11  chr16   80784730       80892961     NM_152342       CDYL2
12  chr16   80784730       80892961     NR_131948     PRCAT47
13   chr4  169219642      169324093  NM_001012967      DDX60L
15   chr4  169219642      169324093     NM_017631       DDX60
16   chr5  127827124      128020524     NM_001999        FBN2
17   chr7   63000773       63200026     NR_036246   MIR4283-1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21752946       22078605  NM_001005465        OR10G3
1   chr14   21752946       22078605  NM_001163380         RAB2B
2   chr14   21752946       22078605  NM_001170629          CHD8
3   chr14   21752946       22078605  NM_001303523          TOX4
4   chr14   21752946       22078605     NM_007192       SUPT16H
5   chr14   21752946       22078605     NM_019852        METTL3
6   chr14   21752946       22078605     NM_020366       RPGRIP1
9   chr14   21752946       22078605     NR_002916        SNORD8
10  chr14   21752946       22078605     NR_003029        SNORD9
11  chr14   21752946       22078605     NR_111966         SALL2
13  chr16   18229512       18892531  NM_001004060         NOMO2
14  chr16   18229512       18892531     NM_001019        RPS15A
15  chr16   18229512       18892531  NM_001282511        NPIPA8
16  chr16   18229512       18892531  NM_001313858       ARL6IP1
17  chr16   18229512       18892531     NM_015092          SMG1
19  chr16   18229512       18892531     NR_003569       ABCC6P1
20  chr16   18229512       18892531     NR_036140     MIR3179-1
21  chr16   18229512       18892531     NR_036142     MIR3180-2
22  chr16   18229512       18892531     NR_036144     MIR3180-3
23  chr16   18229512       18892531     NR_037442     MIR3670-1
24  chr16   18229512       18892531     NR_103772  LOC100288162
25  chr16   18229512       18892531     NR_106971     MIR6511A4
26  chr16   18229512       18892531     NR_107060     MIR6770-2
27   chr5   17739066       17994466     NR_134286     LOC646241,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21824708       22105013  NM_001005465    OR10G3
1   chr14   21824708       22105013  NM_001005466    OR10G2
2   chr14   21824708       22105013  NM_001163380     RAB2B
3   chr14   21824708       22105013  NM_001170629      CHD8
4   chr14   21824708       22105013  NM_001303523      TOX4
5   chr14   21824708       22105013     NM_007192   SUPT16H
6   chr14   21824708       22105013     NM_019852    METTL3
9   chr14   21824708       22105013     NR_002916    SNORD8
10  chr14   21824708       22105013     NR_003029    SNORD9
11  chr14   21824708       22105013     NR_111966     SALL2
13   chr2  193451470      193614971     NR_002769    PCGEM1
14   chr5  109801022      110136195  NM_001039763   TMEM232
15   chr5  109801022      110136195  NM_001303250  SLC25A46
17   chr5  109801022      110136195     NR_031644  MIR548F3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12963339       13199288  NM_001010889       PRAMEF6
1    chr1   12963339       13199288  NM_001010890       PRAMEF9
2    chr1   12963339       13199288  NM_001012276       PRAMEF8
3    chr1   12963339       13199288  NM_001013407       PRAMEF5
4    chr1   12963339       13199288  NM_001099850      PRAMEF18
5    chr1   12963339       13199288  NM_001100631      PRAMEF22
6    chr1   12963339       13199288  NM_001136561      HNRNPCL2
7    chr1   12963339       13199288  NM_001306072      PRAMEF26
8    chr1   12963339       13199288  NM_001310134      PRAMEF25
9    chr1   12963339       13199288     NR_111945     PRAMEF36P
11  chr11    4248771        5369428     NM_000184          HBG2
12  chr11    4248771        5369428     NM_000518           HBB
13  chr11    4248771        5369428     NM_000519           HBD
14  chr11    4248771        5369428     NM_000559          HBG1
15  chr11    4248771        5369428  NM_001001916        OR52J3
16  chr11    4248771        5369428  NM_001004137        OR52M1
17  chr11    4248771        5369428  NM_001004748        OR51A2
18  chr11    4248771        5369428  NM_001004749        OR51A7
19  chr11    4248771        5369428  NM_001004751        OR51D1
20  chr11    4248771        5369428  NM_001004752        OR51F1
21  chr11    4248771        5369428  NM_001004753        OR51F2
22  chr11    4248771        5369428  NM_001004755        OR51L1
23  chr11    4248771        5369428  NM_001004758        OR51S1
24  chr11    4248771        5369428  NM_001004759        OR51T1
25  chr11    4248771        5369428  NM_001004760        OR51V1
26  chr11    4248771        5369428  NM_001005160        OR52A5
27  chr11    4248771        5369428  NM_001005161        OR52B4
28  chr11    4248771        5369428  NM_001005164        OR52E2
29  chr11    4248771        5369428  NM_001005169        OR52I1
30  chr11    4248771        5369428  NM_001005170        OR52I2
..    ...        ...            ...           ...           ...
32  chr11    4248771        5369428  NM_001005172        OR52K2
33  chr11    4248771        5369428  NM_001005177        OR52R1
34  chr11    4248771        5369428  NM_001005237        OR51G1
35  chr11    4248771        5369428  NM_001005238        OR51G2
36  chr11    4248771        5369428  NM_001005329        OR51A4
37  chr11    4248771        5369428  NM_001005567        OR51B5
38  chr11    4248771        5369428     NM_003141        TRIM21
39  chr11    4248771        5369428     NM_005330          HBE1
40  chr11    4248771        5369428     NM_012375        OR52A1
41  chr11    4248771        5369428     NM_018073        TRIM68
42  chr11    4248771        5369428     NM_021801         MMP26
43  chr11    4248771        5369428     NM_030774        OR51E2
44  chr11    4248771        5369428     NM_033179        OR51B4
45  chr11    4248771        5369428     NM_033180        OR51B2
46  chr11    4248771        5369428     NM_144663      C11orf40
47  chr11    4248771        5369428     NM_152430        OR51E1
48  chr11    4248771        5369428     NR_001589         HBBP1
50  chr11    4248771        5369428     NR_121648         BGLT3
51  chr12   71469001       71685134     NM_004616        TSPAN8
52  chr15   28549410       29115547  NM_001282468       GOLGA8M
53  chr15   28549410       29115547     NM_004667         HERC2
54  chr15   28549410       29115547     NR_026589       WHAMMP2
55  chr15   28549410       29115547     NR_033351       GOLGA8F
57  chr15   28549410       29115547     NR_033353       GOLGA8G
59  chr15   28549410       29115547     NR_036443       HERC2P9
60  chr15   28549410       29115547     NR_036475  LOC100289656
61  chr15   28549410       29115547     NR_037599     PDCD6IPP2
62  chr15   28549410       29115547     NR_039734     MIR4509-3
64  chr15   28549410       29115547     NR_047567     GOLGA6L7P
65   chr7    3391622        3499471     NM_152744          SDK1

[61 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  162832203      162973588     NM_178550      CCDC190
1   chr10   81438473       81856797  NM_001270367      TMEM254
4   chr10   81438473       81856797  NM_001278495       NUTM2B
5   chr10   81438473       81856797     NM_003019        SFTPD
6   chr10   81438473       81856797     NR_002724        MBL1P
7   chr10   81438473       81856797     NR_027431  TMEM254-AS1
8   chr10   81438473       81856797     NR_027512      BEND3P3
9   chr10   81438473       81856797     NR_029407    LOC642361
10  chr10   81438473       81856797     NR_033857      BMS1P21
11  chr10   81438473       81856797     NR_120611   NUTM2B-AS1
14  chr14   21947193       22210053  NM_001001912        OR4E2
15  chr14   21947193       22210053  NM_001005465       OR10G3
16  chr14   21947193       22210053  NM_001005466       OR10G2
17  chr14   21947193       22210053  NM_001303523         TOX4
18  chr14   21947193       22210053  NM_001317107        OR4E1
19  chr14   21947193       22210053     NM_019852       METTL3
20  chr14   21947193       22210053     NR_111966        SALL2
22  chr19   20254677       20381390     NM_052852       ZNF486
23  chr20   14726450       14863849     NM_080676      MACROD2
24   chr4   69164406       69347464  NM_001031732       YTHDC1
25   chr4   69164406       69347464     NM_014058    TMPRSS11E
26   chr8  103913226      104014301     NR_126339    AZIN1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143366878      143836555  NM_001123068       PPIAL4G
1    chr1  143366878      143836555     NR_104014     LINC01138
2    chr1  143366878      143836555     NR_106967       MIR6077
3    chr1  143366878      143836555     NR_111930  LOC100132057
4   chr14   21671817       21816377     NM_020366       RPGRIP1
5   chr14   21671817       21816377     NM_031314        HNRNPC
6   chr14   21671817       21816377     NR_038970     LINC00641
8    chr4  169254467      169409900  NM_001012967        DDX60L
10   chr7  110717388      111061842  NM_001099658         LRRN3
11   chr7  110717388      111061842  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11    6709977        6892523  NM_001004460     OR10A2
1  chr11    6709977        6892523  NM_001004489     OR2AG1
2  chr11    6709977        6892523  NM_001004490     OR2AG2
3  chr11    6709977        6892523     NM_003696      OR6A2
4  chr11    6709977        6892523     NM_178168     OR10A5
5  chr11    6709977        6892523     NR_003945     GVINP1
6  chr14   47814660       47968026  NM_001113498      MDGA2
7  chr15   66962951       67109869     NM_005585      SMAD6
8  chr15   66962951       67109869     NR_110372  LINC01169
9   chr4   72973255       73115979     NM_004885     NPFFR2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  108432516      108637734     NM_006113      VAV3
1    chr1  108432516      108637734     NR_046653  VAV3-AS1
2    chr1  108432516      108637734     NR_107006   MIR7852
3   chr14   21839475       22237542  NM_001001912     OR4E2
4   chr14   21839475       22237542  NM_001005465    OR10G3
5   chr14   21839475       22237542  NM_001005466    OR10G2
6   chr14   21839475       22237542  NM_001163380     RAB2B
7   chr14   21839475       22237542  NM_001170629      CHD8
8   chr14   21839475       22237542  NM_001303523      TOX4
9   chr14   21839475       22237542  NM_001317107     OR4E1
10  chr14   21839475       22237542     NM_007192   SUPT16H
11  chr14   21839475       22237542     NM_019852    METTL3
14  chr14   21839475       22237542     NR_002916    SNORD8
15  chr14   21839475       22237542     NR_003029    SNORD9
16  chr14   21839475       22237542     NR_111966     SALL2
18   chr4    8965654        9299642  NM_001256852  USP17L10
19   chr4    8965654        9299642  NM_001256853  USP17L12
21   chr4    8965654        9299642  NM_001256854  USP17L11
24   chr4    8965654        9299642  NM_001256855  USP17L13
25   chr4    8965654        9299642  NM_001256857  USP17L17
26   chr4    8965654        9299642  NM_001256860  USP17L19
27   chr4    8965654        9299642  NM_001256861  USP17L20
28   chr4    8965654        9299642  NM_001256894  USP17L15,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21680543       21939697  NM_001163380     RAB2B
1   chr14   21680543       21939697  NM_001170629      CHD8
2   chr14   21680543       21939697     NM_007192   SUPT16H
3   chr14   21680543       21939697     NM_020366   RPGRIP1
5   chr14   21680543       21939697     NM_031314    HNRNPC
7   chr14   21680543       21939697     NR_002916    SNORD8
8   chr14   21680543       21939697     NR_003029    SNORD9
9   chr20   14614243       14719332     NM_080676   MACROD2
10   chr6  162852233      163059388     NM_013988     PARK2,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0     chr1  143488236      144863543  NM_001123068       PPIAL4G
1     chr1  143488236      144863543  NM_001135789       PPIAL4C
2     chr1  143488236      144863543  NM_001198832       PDE4DIP
4     chr1  143488236      144863543  NM_001277444         NBPF9
5     chr1  143488236      144863543  NM_001278267        NBPF20
6     chr1  143488236      144863543  NM_001287385        FAM72C
7     chr1  143488236      144863543  NM_001345942        FAM72D
11    chr1  143488236      144863543     NR_003242        PFN1P2
12    chr1  143488236      144863543     NR_024511     LINC00623
14    chr1  143488236      144863543     NR_102405         NBPF8
15    chr1  143488236      144863543     NR_104014     LINC01138
16    chr1  143488236      144863543     NR_106967       MIR6077
17    chr1  143488236      144863543     NR_111930  LOC100132057
18    chr1  143488236      144863543     NR_111953     LINC00869
20   chr14   21842153       25282088     NM_000257          MYH7
21   chr14   21842153       25282088     NM_000359          TGM1
22   chr14   21842153       25282088  NM_001001912         OR4E2
23   chr14   21842153       25282088  NM_001002000         GMPR2
25   chr14   21842153       25282088  NM_001005465        OR10G3
26   chr14   21842153       25282088  NM_001005466        OR10G2
27   chr14   21842153       25282088  NM_001014842        TM9SF1
28   chr14   21842153       25282088  NM_001018073          PCK2
29   chr14   21842153       25282088  NM_001039619         PRMT5
30   chr14   21842153       25282088  NM_001039771         CBLN3
31   chr14   21842153       25282088  NM_001042635          NGDN
32   chr14   21842153       25282088  NM_001048205          REC8
33   chr14   21842153       25282088  NM_001099274         TINF2
34   chr14   21842153       25282088  NM_001099780        PSMB11
35   chr14   21842153       25282088  NM_001126105        SLC7A7
37   chr14   21842153       25282088  NM_001130706      C14orf93
..     ...        ...            ...           ...           ...
121  chr14   21842153       25282088     NM_022060         ABHD4
122  chr14   21842153       25282088     NM_022478         CDH24
123  chr14   21842153       25282088     NM_022789          IL25
124  chr14   21842153       25282088     NM_025081        NYNRIN
128  chr14   21842153       25282088     NM_033400         ZFHX2
129  chr14   21842153       25282088     NM_033423          GZMH
130  chr14   21842153       25282088     NM_138360       CARMIL3
132  chr14   21842153       25282088     NM_138460         CMTM5
133  chr14   21842153       25282088     NM_138476          MDP1
134  chr14   21842153       25282088     NM_139247         ADCY4
136  chr14   21842153       25282088     NM_173527          REM2
139  chr14   21842153       25282088     NM_182836       RABGGTA
143  chr14   21842153       25282088     NM_203402         FITM1
144  chr14   21842153       25282088     NR_002916        SNORD8
145  chr14   21842153       25282088     NR_003029        SNORD9
146  chr14   21842153       25282088     NR_023921     DHRS4-AS1
149  chr14   21842153       25282088     NR_029595       MIR208A
150  chr14   21842153       25282088     NR_030624       MIR208B
151  chr14   21842153       25282088     NR_039856       MIR4707
155  chr14   21842153       25282088     NR_051979          IPO4
156  chr14   21842153       25282088     NR_102688       DHRS4L1
158  chr14   21842153       25282088     NR_106990       MIR7703
159  chr14   21842153       25282088     NR_110002  LOC101926933
160  chr14   21842153       25282088     NR_110032  LOC101927045
162  chr14   21842153       25282088     NR_110555  LOC102724814
163  chr14   21842153       25282088     NR_111966         SALL2
165  chr14   21842153       25282088     NR_120599     PRMT5-AS1
166  chr14   21842153       25282088     NR_126491          MHRT
168   chr2   50834393       50964022  NM_001330082         NRXN1
169   chr2   50834393       50964022     NR_130470       MIR8485

[119 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12840942       12978663  NM_001009611       PRAMEF4
1    chr1   12840942       12978663  NM_001012276       PRAMEF8
2    chr1   12840942       12978663  NM_001013631      HNRNPCL1
3    chr1   12840942       12978663  NM_001146181      HNRNPCL3
4    chr1   12840942       12978663  NM_001146344      PRAMEF11
5    chr1   12840942       12978663  NM_001294139       PRAMEF1
6    chr1   12840942       12978663  NM_001302551      HNRNPCL4
8    chr1   12840942       12978663     NM_023014       PRAMEF2
9   chr12  120502610      120679474  NM_001167606         RAB35
10  chr12  120502610      120679474     NM_002859           PXN
11  chr12  120502610      120679474     NM_006836          GCN1
13  chr12  120502610      120679474     NM_053275         RPLP0
14  chr12  120502610      120679474     NM_207311        BICDL1
15  chr12  120502610      120679474     NR_038924       PXN-AS1
16  chr12  120502610      120679474     NR_039719       MIR4498
17  chr15   28585552       31129827  NM_001039841     ARHGAP11B
18  chr15   28585552       31129827  NM_001130414         APBA2
19  chr15   28585552       31129827  NM_001282468       GOLGA8M
20  chr15   28585552       31129827  NM_001282472       GOLGA8J
21  chr15   28585552       31129827  NM_001282484       GOLGA8R
22  chr15   28585552       31129827  NM_001282490       GOLGA8H
23  chr15   28585552       31129827  NM_001301025          TJP1
26  chr15   28585552       31129827     NM_015307      FAM189A1
27  chr15   28585552       31129827     NM_138704        NSMCE3
28  chr15   28585552       31129827     NM_139320      CHRFAM7A
29  chr15   28585552       31129827     NR_026589       WHAMMP2
30  chr15   28585552       31129827     NR_026771  DKFZP434L187
31  chr15   28585552       31129827     NR_026858        ULK4P1
32  chr15   28585552       31129827     NR_026859        ULK4P3
33  chr15   28585552       31129827     NR_033351       GOLGA8F
35  chr15   28585552       31129827     NR_033353       GOLGA8G
37  chr15   28585552       31129827     NR_033933       GOLGA8T
38  chr15   28585552       31129827     NR_036443       HERC2P9
39  chr15   28585552       31129827     NR_036475  LOC100289656
40  chr15   28585552       31129827     NR_037599     PDCD6IPP2
41  chr15   28585552       31129827     NR_038253  LOC100288637
43  chr15   28585552       31129827     NR_039734     MIR4509-3
45  chr15   28585552       31129827     NR_047567     GOLGA6L7P
46  chr15   28585552       31129827     NR_072991      HERC2P10
47  chr15   28585552       31129827     NR_135221  LOC100130111
48   chr9   11988437       12845072     NM_000550         TYRP1
49   chr9   11988437       12845072     NM_203403       LURAP1L
50   chr9   11988437       12845072     NR_125775   LURAP1L-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12852074       13283463  NM_001009611       PRAMEF4
1    chr1   12852074       13283463  NM_001010889       PRAMEF6
2    chr1   12852074       13283463  NM_001010890       PRAMEF9
3    chr1   12852074       13283463  NM_001012276       PRAMEF8
4    chr1   12852074       13283463  NM_001013407       PRAMEF5
5    chr1   12852074       13283463  NM_001013631      HNRNPCL1
6    chr1   12852074       13283463  NM_001099850      PRAMEF18
7    chr1   12852074       13283463  NM_001100631      PRAMEF22
8    chr1   12852074       13283463  NM_001136561      HNRNPCL2
9    chr1   12852074       13283463  NM_001146181      HNRNPCL3
10   chr1   12852074       13283463  NM_001146344      PRAMEF11
11   chr1   12852074       13283463  NM_001294139       PRAMEF1
12   chr1   12852074       13283463  NM_001302551      HNRNPCL4
13   chr1   12852074       13283463  NM_001306072      PRAMEF26
14   chr1   12852074       13283463  NM_001310134      PRAMEF25
16   chr1   12852074       13283463     NM_023014       PRAMEF2
17   chr1   12852074       13283463     NR_111945     PRAMEF36P
19  chr14   21752623       21929997  NM_001163380         RAB2B
20  chr14   21752623       21929997  NM_001170629          CHD8
21  chr14   21752623       21929997     NM_007192       SUPT16H
22  chr14   21752623       21929997     NM_020366       RPGRIP1
25  chr14   21752623       21929997     NR_002916        SNORD8
26  chr14   21752623       21929997     NR_003029        SNORD9
27  chr15   30245686       30396029  NM_001282472       GOLGA8J
28  chr15   30245686       30396029  NM_001301025          TJP1
29  chr15   30245686       30396029     NR_026859        ULK4P3
30  chr20   14616295       16063079  NM_001033087       MACROD2
32  chr20   14616295       16063079     NR_037841   MACROD2-AS1
34  chr20   14616295       16063079     NR_130924     LOC613266
36  chr22   17175803       17288713     NM_175878          XKR3
37  chr22   17175803       17288713     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143078644      144259551  NM_001123068       PPIAL4G
1    chr1  143078644      144259551  NM_001278267        NBPF20
2    chr1  143078644      144259551  NM_001287385        FAM72C
3    chr1  143078644      144259551  NM_001345942        FAM72D
7    chr1  143078644      144259551     NR_104014     LINC01138
8    chr1  143078644      144259551     NR_106967       MIR6077
9    chr1  143078644      144259551     NR_110761  LOC102723769
10   chr1  143078644      144259551     NR_111930  LOC100132057
12  chr14   21727591       21931623  NM_001163380         RAB2B
13  chr14   21727591       21931623  NM_001170629          CHD8
14  chr14   21727591       21931623     NM_007192       SUPT16H
15  chr14   21727591       21931623     NM_020366       RPGRIP1
17  chr14   21727591       21931623     NM_031314        HNRNPC
19  chr14   21727591       21931623     NR_002916        SNORD8
20  chr14   21727591       21931623     NR_003029        SNORD9
21  chr15   28535159       28648516     NM_004667         HERC2
22  chr15   28535159       28648516     NR_033351       GOLGA8F
23  chr15   28535159       28648516     NR_033353       GOLGA8G,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21754946       21896525  NM_001170629      CHD8
1  chr14   21754946       21896525     NM_007192   SUPT16H
2  chr14   21754946       21896525     NM_020366   RPGRIP1
4  chr14   21754946       21896525     NR_002916    SNORD8
5  chr14   21754946       21896525     NR_003029    SNORD9
6  chr16    6517763        6675374  NM_001308117    RBFOX1
8   chr2  214242554      214717969     NM_024532    SPAG16
9   chr2  214242554      214717969     NR_039640   MIR4438,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89063032       89235772  NM_001143837          NOX4
6   chr15   28654321       29407674  NM_001130414         APBA2
7   chr15   28654321       29407674  NM_001282468       GOLGA8M
8   chr15   28654321       29407674     NR_026589       WHAMMP2
9   chr15   28654321       29407674     NR_033351       GOLGA8F
10  chr15   28654321       29407674     NR_033353       GOLGA8G
11  chr15   28654321       29407674     NR_036443       HERC2P9
12  chr15   28654321       29407674     NR_036475  LOC100289656
13  chr15   28654321       29407674     NR_037599     PDCD6IPP2
14  chr15   28654321       29407674     NR_039734     MIR4509-3
16  chr15   28654321       29407674     NR_047567     GOLGA6L7P
17   chr2   51159417       51307484  NM_001330079         NRXN1
20   chr2   51159417       51307484     NR_135237     LOC730100
21   chr7   80177205       80336614     NM_000072          CD36,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72624846       72725922     NM_013381         TRHDE
1   chr12   72624846       72725922     NR_026836     TRHDE-AS1
3   chr13   80813901       80953679  NM_001318536         SPRY2
6   chr13   93139563       93786473     NM_004466          GPC5
7   chr13   93139563       93786473     NR_046520      GPC5-AS1
10  chr13   93139563       93786473     NR_049840      MIR548AS
11  chr13   93139563       93786473     NR_126360     LINC00363
12   chr4   35209291       37682739  NM_001085399         RELL1
14   chr4   35209291       37682739  NM_001104629       C4orf19
15   chr4   35209291       37682739  NM_001136536         DTHD1
16   chr4   35209291       37682739  NM_001144990          NWD2
18   chr4   35209291       37682739     NM_015230         ARAP2
20   chr4   35209291       37682739     NR_031701     MIR1255B1
21   chr4   35209291       37682739     NR_039965       MIR4801
22   chr4   35209291       37682739     NR_122079     LOC439933
24   chr4   35209291       37682739     NR_134669  LOC100508631
25   chr7   64050957       64380259  NM_001160183        ZNF138
26   chr7   64050957       64380259  NM_001282360        ZNF107
27   chr7   64050957       64380259     NM_021148        ZNF273
29   chr7   64050957       64380259     NR_077227  LOC100128885
31   chr7   64050957       64380259     NR_106898       MIR6839
32   chr9  116740110      116840132  NM_001318041        ZNF618
33   chr9  116740110      116840132     NM_001633          AMBP,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21825576       21994590  NM_001163380         RAB2B
1   chr14   21825576       21994590  NM_001170629          CHD8
2   chr14   21825576       21994590  NM_001303523          TOX4
3   chr14   21825576       21994590     NM_007192       SUPT16H
4   chr14   21825576       21994590     NM_019852        METTL3
7   chr14   21825576       21994590     NR_002916        SNORD8
8   chr14   21825576       21994590     NR_003029        SNORD9
9   chr14   21825576       21994590     NR_111966         SALL2
11  chr14   21882085       22105390  NM_001005465        OR10G3
12  chr14   21882085       22105390  NM_001005466        OR10G2
13  chr14   21882085       22105390  NM_001163380         RAB2B
14  chr14   21882085       22105390  NM_001170629          CHD8
15  chr14   21882085       22105390  NM_001303523          TOX4
16  chr14   21882085       22105390     NM_019852        METTL3
19  chr14   21882085       22105390     NR_111966         SALL2
21   chr2   78261236       79138691     NR_110287  LOC101927948
22   chr2   78261236       79138691     NR_110288  LOC101927967
23   chr2   78261236       79138691     NR_136312  LOC105374820
24   chr8   48461614       48708277  NM_001080394         SPIDR
25   chr8   48461614       48708277     NM_005195         CEBPD
26   chr8   48461614       48708277     NM_006904         PRKDC,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   19578192       19903851  NM_001267043         AEBP2
2   chr14   45436723       45544572  NM_001308120       FAM179B
3   chr16   18088093       18631383  NM_001004060         NOMO2
4   chr16   18088093       18631383  NM_001282511        NPIPA8
5   chr16   18088093       18631383     NR_003569       ABCC6P1
6   chr16   18088093       18631383     NR_036140     MIR3179-1
7   chr16   18088093       18631383     NR_036142     MIR3180-2
8   chr16   18088093       18631383     NR_036144     MIR3180-3
9   chr16   18088093       18631383     NR_037442     MIR3670-1
10  chr16   18088093       18631383     NR_103772  LOC100288162
11  chr16   18088093       18631383     NR_106971     MIR6511A4
12  chr16   18088093       18631383     NR_107060     MIR6770-2
13   chr2   97241311       97366099  NM_001115016        KANSL3
14   chr2   97241311       97366099  NM_001293083        FER1L5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   71509535       71617397     NM_004616        TSPAN8
1   chr13   59926660       60432244  NM_001042517        DIAPH3
5   chr15   20977844       21218913  NM_001277303        POTEB2
6   chr15   20977844       21218913     NM_207355        POTEB3
7   chr15   20977844       21218913     NR_028506         NF1P2
8   chr15   20977844       21218913     NR_036062     MIR3118-2
9   chr15   20977844       21218913     NR_040094     LINC01193
10  chr15   20977844       21218913     NR_049895     MIR5701-2
12   chr2   52233962       52359698     NR_135237     LOC730100
13  chr22   17227658       17940963  NM_001037814          GAB4
14  chr22   17227658       17940963  NM_001163079         CECR6
15  chr22   17227658       17940963  NM_001282227         CECR1
17  chr22   17227658       17940963  NM_001289905        IL17RA
18  chr22   17227658       17940963  NM_001290046         CECR2
19  chr22   17227658       17940963     NM_017829         CECR5
22  chr22   17227658       17940963     NM_175878          XKR3
24  chr22   17227658       17940963     NR_003607       HSFY1P1
25  chr22   17227658       17940963     NR_015352         CECR7
26  chr22   17227658       17940963     NR_024482     CECR5-AS1
27  chr22   17227658       17940963     NR_038398         CECR3
28  chr22   17227658       17940963     NR_103793  LOC100996342
29  chr22   17227658       17940963     NR_134584  LOC101929350
30   chr4   93762960       94610904     NM_001510         GRID2
31   chr7  110512289      110623624  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21811259       21945233  NM_001163380     RAB2B
1  chr14   21811259       21945233  NM_001170629      CHD8
2  chr14   21811259       21945233     NM_007192   SUPT16H
3  chr14   21811259       21945233     NM_020366   RPGRIP1
6  chr14   21811259       21945233     NR_002916    SNORD8
7  chr14   21811259       21945233     NR_003029    SNORD9
8   chr3  155582986      155706871     NM_003875      GMPS,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   18454443       18596363  NM_001004060      NOMO2
1   chr16   18454443       18596363     NR_003569    ABCC6P1
2   chr16   18454443       18596363     NR_036140  MIR3179-1
3   chr16   18454443       18596363     NR_036142  MIR3180-2
4   chr16   18454443       18596363     NR_036144  MIR3180-3
5   chr16   18454443       18596363     NR_037442  MIR3670-1
6   chr16   18454443       18596363     NR_107060  MIR6770-2
7   chr19   33117513       33335988  NM_001105570     NUDT19
8   chr19   33117513       33335988  NM_001110822     TDRD12
9   chr19   33117513       33335988     NM_014270     SLC7A9
10  chr19   33117513       33335988     NM_032139    ANKRD27
11  chr19   33117513       33335988     NM_207391     RGS9BP
12   chr7   14782922       14901625     NM_004080       DGKB
14   chr9   28140008       28406999  NM_001258282     LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143690721      143937072  NM_001123068       PPIAL4G
1    chr1  143690721      143937072  NM_001287385        FAM72C
2    chr1  143690721      143937072  NM_001345942        FAM72D
6    chr1  143690721      143937072     NR_104014     LINC01138
7    chr1  143690721      143937072     NR_111930  LOC100132057
9   chr15   28797366       28942961     NR_036443       HERC2P9
10  chr15   30301583       30447948  NM_001282472       GOLGA8J
11  chr15   30301583       30447948     NR_026859        ULK4P3
12  chr15   30301583       30447948     NR_033933       GOLGA8T
13   chr4   69203730       69532537  NM_001031732        YTHDC1
14   chr4   69203730       69532537     NM_001076       UGT2B15
15   chr4   69203730       69532537     NM_001077       UGT2B17
16   chr4   69203730       69532537     NM_014058     TMPRSS11E
17   chr5  175370506      175836766  NM_001079684      KIAA1191
18   chr5  175370506      175836766  NM_001256539         NOP16
19   chr5  175370506      175836766  NM_001265615       FAM153B
20   chr5  175370506      175836766  NM_001308196         SIMC1
22   chr5  175370506      175836766  NM_001317948         ARL10
23   chr5  175370506      175836766     NM_032361         THOC3
24   chr5  175370506      175836766     NM_138820        HIGD2A
26   chr5  175370506      175836766     NR_031569       MIR1271
27   chr5  175370506      175836766     NR_036494     LOC643201
28   chr5  175370506      175836766     NR_038402  LOC100507387
29   chr5  175370506      175836766     NR_045724          CLTB
30   chr5  175370506      175836766     NR_103794  LOC100996385
31   chr6  161907703      162641665     NM_013988         PARK2
32   chr9   28554226       28993338  NM_001258282        LINGO2
34   chr9   28554226       28993338     NR_030597        MIR876
35   chr9   28554226       28993338     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  112358749      113806525  NM_001004440       FAM19A3
1    chr1  112358749      113806525  NM_001042679          RHOC
2    chr1  112358749      113806525  NM_001130079         MOV10
3    chr1  112358749      113806525  NM_001166496       SLC16A1
4    chr1  112358749      113806525  NM_001270945     LOC643355
6    chr1  112358749      113806525  NM_001308264          ST7L
7    chr1  112358749      113806525  NM_001312686         LRIG2
10   chr1  112358749      113806525     NM_004185         WNT2B
11   chr1  112358749      113806525     NM_005167         PPM1J
12   chr1  112358749      113806525     NM_006135        CAPZA1
14   chr1  112358749      113806525     NM_018704     CTTNBP2NL
17   chr1  112358749      113806525     NM_172198         KCND3
19   chr1  112358749      113806525     NR_002796      AKR7A2P1
20   chr1  112358749      113806525     NR_036210       MIR4256
21   chr1  112358749      113806525     NR_038846     LOC643441
22   chr1  112358749      113806525     NR_046619     KCND3-AS1
23   chr1  112358749      113806525     NR_046783     KCND3-IT1
24   chr1  112358749      113806525     NR_103743   SLC16A1-AS1
25   chr1  112358749      113806525     NR_103746     LINC01356
26   chr1  112358749      113806525     NR_103777  LOC100996251
27  chr14   21772148       22641005  NM_001001912         OR4E2
28  chr14   21772148       22641005  NM_001005465        OR10G3
29  chr14   21772148       22641005  NM_001005466        OR10G2
30  chr14   21772148       22641005  NM_001163380         RAB2B
31  chr14   21772148       22641005  NM_001170629          CHD8
32  chr14   21772148       22641005  NM_001303523          TOX4
33  chr14   21772148       22641005  NM_001317107         OR4E1
34  chr14   21772148       22641005     NM_007192       SUPT16H
35  chr14   21772148       22641005     NM_019852        METTL3
36  chr14   21772148       22641005     NM_020366       RPGRIP1
39  chr14   21772148       22641005     NR_002916        SNORD8
40  chr14   21772148       22641005     NR_003029        SNORD9
41  chr14   21772148       22641005     NR_111966         SALL2
43   chr2   78754728       79020471     NR_136312  LOC105374820
44   chr3     823892         930023     NR_110118     LINC01266
45   chr4   69112797       69580432  NM_001031732        YTHDC1
46   chr4   69112797       69580432     NM_001076       UGT2B15
47   chr4   69112797       69580432     NM_001077       UGT2B17
48   chr4   69112797       69580432     NM_014058     TMPRSS11E
49   chr9   41682182       42345201     NR_003670        FGF7P3
50   chr9   41682182       42345201     NR_015363         GLIDR
53   chr9   41682182       42345201     NR_126048  LOC102724238
54   chr9   41682182       42345201     NR_126049     LOC554249
55   chr9   67120544       67438809     NR_002817        AQP7P1
56   chr9   67120544       67438809     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr10   67589495       67738570  NM_001127384         CTNNA3
2   chr11   48395573       48530318  NM_001005512         OR4A47
3   chr16   15076270       15534577  NM_001128423         MPV17L
4   chr16   15076270       15534577  NM_001270767          NTAN1
5   chr16   15076270       15534577  NM_001277325         NPIPA5
6   chr16   15076270       15534577  NM_001285445         PDXDC1
11  chr16   15076270       15534577  NM_001301064           RRN3
13  chr16   15076270       15534577     NM_033201       C16orf45
14  chr16   15076270       15534577     NR_037466      MIR3180-4
15  chr16   15076270       15534577     NR_106775      MIR6511B1
16  chr16   15076270       15534577     NR_106965      MIR6511B2
17  chr16   15076270       15534577     NR_123721  PKD1P6-NPIPP1
19  chr16   15076270       15534577     NR_125434   LOC100505915
20  chr19   10228652       10381902     NM_000201          ICAM1
21  chr19   10228652       10381902  NM_001318730          DNMT1
23  chr19   10228652       10381902     NM_003755          EIF3G
24  chr19   10228652       10381902     NM_004230          S1PR2
25  chr19   10228652       10381902     NM_015956          MRPL4
27  chr19   10228652       10381902     NR_036206        MIR4322
28  chr22   19017797       19545820  NM_001035247          UFD1L
29  chr22   19017797       19545820  NM_001166242       C22orf39
30  chr22   19017797       19545820  NM_001178010          CDC45
31  chr22   19017797       19545820  NM_001184781          DGCR2
32  chr22   19017797       19545820  NM_001256534        SLC25A1
33  chr22   19017797       19545820  NM_001318151         MRPL40
35  chr22   19017797       19545820     NM_001835         CLTCL1
36  chr22   19017797       19545820     NM_003277          CLDN5
37  chr22   19017797       19545820     NM_003325           HIRA
39  chr22   19017797       19545820     NM_005315           GSC2
41  chr22   19017797       19545820     NM_022719         DGCR14
42  chr22   19017797       19545820     NM_053006          TSSK2
44  chr22   19017797       19545820     NR_024157         DGCR11
45  chr22   19017797       19545820     NR_103767      LINC01311
46  chr22   19017797       19545820     NR_110533          DGCR5
47   chr4  169253701      169452510  NM_001012967         DDX60L
48   chr4  169253701      169452510  NM_001166108          PALLD
50   chr8    7205888        7527779  NM_001040705       DEFB107B
51   chr8    7205888        7527779  NM_001081551       DEFB103A
52   chr8    7205888        7527779  NM_001164457        ZNF705G
53   chr8    7205888        7527779  NM_001205266         DEFB4B
54   chr8    7205888        7527779  NM_001282478        PRR23D2
55   chr8    7205888        7527779  NM_001282479        PRR23D1
56   chr8    7205888        7527779     NM_058200        SPAG11B
60   chr8    7205888        7527779     NM_080389       DEFB104A
61   chr8    7205888        7527779     NM_152250       DEFB105A
62   chr8    7205888        7527779     NM_152251       DEFB106A
63   chr8    7205888        7527779     NR_027423         FAM66B
64   chr8    7205888        7527779     NR_046343       FAM90A7P
66   chr9   31249253       31423498     NR_135134      LINC01243,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68127698       68249532  NM_001127384        CTNNA3
2   chr10   88960599       89345588  NM_001099338        NUTM2A
3   chr10   88960599       89345588  NM_001178118        MINPP1
5   chr10   88960599       89345588     NR_024397    NUTM2A-AS1
6   chr10   88960599       89345588     NR_029408     LINC00863
7   chr10   88960599       89345588     NR_039825       MIR4678
8   chr10   88960599       89345588     NR_046091     LINC00864
9   chr10   88960599       89345588     NR_075100        NUTM2D
11  chr12   72647331       72818753     NM_013381         TRHDE
12  chr12   72647331       72818753     NR_026836     TRHDE-AS1
14  chr14   21671011       21936560  NM_001163380         RAB2B
15  chr14   21671011       21936560  NM_001170629          CHD8
16  chr14   21671011       21936560     NM_007192       SUPT16H
17  chr14   21671011       21936560     NM_020366       RPGRIP1
19  chr14   21671011       21936560     NM_031314        HNRNPC
21  chr14   21671011       21936560     NR_002916        SNORD8
22  chr14   21671011       21936560     NR_003029        SNORD9
23  chr14   21671011       21936560     NR_038970     LINC00641
25  chr15   28147419       28258869     NM_000275          OCA2
27  chr16   18275184       18486073  NM_001282511        NPIPA8
28  chr16   18275184       18486073     NR_103772  LOC100288162
29  chr16   18275184       18486073     NR_106971     MIR6511A4
30  chr16   18275184       18486073     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   40258695       40440779  NM_001258419        LRRC4C
2   chr12   27176435       27383901  NM_001080406      C12orf71
3   chr12   27176435       27383901  NM_001271811         MED21
4   chr14   21740510       23338518  NM_001001912         OR4E2
5   chr14   21740510       23338518  NM_001005465        OR10G3
6   chr14   21740510       23338518  NM_001005466        OR10G2
7   chr14   21740510       23338518  NM_001126105        SLC7A7
9   chr14   21740510       23338518  NM_001163380         RAB2B
10  chr14   21740510       23338518  NM_001170629          CHD8
11  chr14   21740510       23338518  NM_001303523          TOX4
12  chr14   21740510       23338518  NM_001317107         OR4E1
13  chr14   21740510       23338518  NM_001318870        MRPL52
14  chr14   21740510       23338518     NM_001344          DAD1
15  chr14   21740510       23338518     NM_004995         MMP14
16  chr14   21740510       23338518     NM_005015         OXA1L
17  chr14   21740510       23338518     NM_007192       SUPT16H
18  chr14   21740510       23338518     NM_019852        METTL3
19  chr14   21740510       23338518     NM_020366       RPGRIP1
21  chr14   21740510       23338518     NM_022060         ABHD4
23  chr14   21740510       23338518     NR_002916        SNORD8
24  chr14   21740510       23338518     NR_003029        SNORD9
26  chr14   21740510       23338518     NR_111966         SALL2
28  chr14   81621987       82375340  NM_001244984         SEL1L
29  chr14   81621987       82375340  NM_001256430         STON2
30  chr14   81621987       82375340  NM_001278940        GTF2A1
34  chr14   81621987       82375340     NR_003021       SNORA79
35  chr14   81621987       82375340     NR_109999  LOC100506700
36  chr14   81621987       82375340     NR_110074     LINC01467
37  chr14   81621987       82375340     NR_135252  LOC101928504
38   chr2   35690793       36282022     NR_039629      MIR548AD
39   chr2   51994412       52141232     NR_135237     LOC730100
40  chr22   17215088       17829581  NM_001037814          GAB4
41  chr22   17215088       17829581  NM_001163079         CECR6
42  chr22   17215088       17829581  NM_001282227         CECR1
44  chr22   17215088       17829581  NM_001289905        IL17RA
45  chr22   17215088       17829581     NM_017829         CECR5
48  chr22   17215088       17829581     NM_175878          XKR3
50  chr22   17215088       17829581     NR_003607       HSFY1P1
51  chr22   17215088       17829581     NR_015352         CECR7
52  chr22   17215088       17829581     NR_024482     CECR5-AS1
53  chr22   17215088       17829581     NR_038398         CECR3
54  chr22   17215088       17829581     NR_103793  LOC100996342
55  chr22   17215088       17829581     NR_134584  LOC101929350
56   chr7   75743556       75852623  NM_001110199         SRRM3
57   chr7   88935322       89046164     NM_181646       ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  233737546      233845443     NM_002245          KCNK1
1    chr1  233737546      233845443     NR_039625        MIR4427
2   chr14   21878557       23062372  NM_001001912          OR4E2
3   chr14   21878557       23062372  NM_001005465         OR10G3
4   chr14   21878557       23062372  NM_001005466         OR10G2
5   chr14   21878557       23062372  NM_001163380          RAB2B
6   chr14   21878557       23062372  NM_001170629           CHD8
7   chr14   21878557       23062372  NM_001303523           TOX4
8   chr14   21878557       23062372  NM_001317107          OR4E1
9   chr14   21878557       23062372     NM_001344           DAD1
10  chr14   21878557       23062372     NM_019852         METTL3
13  chr14   21878557       23062372     NR_111966          SALL2
15  chr16   29458995       29749975  NM_001014999          SLX1A
16  chr16   29458995       29749975  NM_001017390        SULT1A4
17  chr16   29458995       29749975  NM_001030288            SPN
18  chr16   29458995       29749975  NM_001031827          BOLA2
19  chr16   29458995       29749975  NM_001318249           QPRT
20  chr16   29458995       29749975  NM_001320622   BOLA2-SMG1P6
23  chr16   29458995       29749975     NR_002454      LOC606724
24  chr16   29458995       29749975     NR_002556      LOC388242
25  chr16   29458995       29749975     NR_037608  SLX1A-SULT1A3
26  chr16   29458995       29749975     NR_049833      MIR3680-2
28  chr16   29458995       29749975     NR_135305         SMG1P2
30   chr2   97181397       97348783  NM_001115016         KANSL3
31   chr2   97181397       97348783  NM_001293083         FER1L5
32   chr2   97181397       97348783  NM_001319085         ARID5A
35   chr2   97181397       97348783     NR_135564   LOC105373496
36  chr20   14657695       14803802     NM_080676        MACROD2
37  chr22   19897917       20024115     NM_000754           COMT
40  chr22   19897917       20024115  NM_001282512         TXNRD2
41  chr22   19897917       20024115  NM_001283116         TANGO2
44  chr22   19897917       20024115     NM_001670          ARVCF
47  chr22   19897917       20024115     NR_029706         MIR185
48  chr22   19897917       20024115     NR_039918        MIR4761
49   chr6   92015421       92364263     NR_039786        MIR4643
50   chr6   92015421       92364263     NR_104154          CASC6
51   chr8  143409922      143554482  NM_001291931        TSNARE1
52   chr8  143409922      143554482     NM_001702         ADGRB1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   47817843       48323041  NM_001113498      MDGA2
1   chr14   47817843       48323041     NR_037503    MIR548Y
2   chr14   47817843       48323041     NR_039996  LINC00648
3   chr16   21715368       23143867  NM_001135865     NPIPB5
4   chr16   21715368       23143867  NM_001161683       OTOA
5   chr16   21715368       23143867  NM_001164579   C16orf52
6   chr16   21715368       23143867  NM_001258033     POLR3E
7   chr16   21715368       23143867  NM_001310148     NPIPB4
8   chr16   21715368       23143867     NM_001802       CDR2
9   chr16   21715368       23143867     NM_003366     UQCRC2
10  chr16   21715368       23143867     NM_006043     HS3ST2
11  chr16   21715368       23143867     NM_013302      EEF2K
12  chr16   21715368       23143867     NM_020718      USP31
15  chr16   21715368       23143867     NM_173615      VWA3A
16  chr16   21715368       23143867     NM_173806      PDZD9
17  chr16   21715368       23143867     NR_003370     RRN3P1
18  chr16   21715368       23143867     NR_003676  LOC653786
19  chr16   21715368       23143867     NR_027154     SMG1P1
20  chr16   21715368       23143867     NR_027460     RRN3P3
21  chr16   21715368       23143867     NR_136333    MFSD13B
22  chr22   17267586       17380856     NM_175878       XKR3
23  chr22   17267586       17380856     NR_003607    HSFY1P1
24   chr7   29471795       29903184  NM_001080529      WIPF3
25   chr7   29471795       29903184  NM_001293069       CHN2
29   chr7   29471795       29903184  NM_001329997      PRR15
32   chr7   29471795       29903184     NR_024278  LOC646762
33   chr7   29471795       29903184     NR_027347    ZNRF2P2
34   chr7   29471795       29903184     NR_036482  DPY19L2P3
35   chr7   29471795       29903184     NR_039600   MIR550A3,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr12   72578072       72684829  NM_013381      TRHDE
1  chr12   72578072       72684829  NR_026836  TRHDE-AS1
3  chr15   28741462       28874338  NR_033351    GOLGA8F
4  chr15   28741462       28874338  NR_033353    GOLGA8G
5  chr18   40238129       40371288  NM_002930       RIT2
6  chr18   40238129       40371288  NR_046174  LINC00907,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63143324       63305641     NR_047029     LINC00448
1   chr14   19903798       20031979  NM_001145442         POTEM
2   chr14   19903798       20031979     NR_073459       BMS1P18
3   chr14   19903798       20031979     NR_110505  LOC100508046
4   chr14   19903798       20031979     NR_110526       DUXAP10
5   chr14   19903798       20031979     NR_122111     LINC01296
7   chr14   19903798       20031979     NR_133911       BMS1P22
8   chr14   21788903       21894296  NM_001170629          CHD8
9   chr14   21788903       21894296     NM_007192       SUPT16H
10  chr14   21788903       21894296     NM_020366       RPGRIP1
12  chr14   21788903       21894296     NR_002916        SNORD8
13  chr14   21788903       21894296     NR_003029        SNORD9
14  chr16    6759372        6884980  NM_001142334        RBFOX1
17  chr16   79814728       80049632     NR_104660     LINC01229
19   chr7    3309689        3489831     NM_152744          SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143685016      143974351  NM_001123068       PPIAL4G
1    chr1  143685016      143974351  NM_001287385        FAM72C
2    chr1  143685016      143974351  NM_001345942        FAM72D
6    chr1  143685016      143974351     NR_104014     LINC01138
7    chr1  143685016      143974351     NR_111930  LOC100132057
9   chr14   38191846       38370732  NM_001310135          TTC6
10  chr14   38191846       38370732     NR_135286     LINC00517
11   chr4  169214073      170642572  NM_001012967        DDX60L
12   chr4  169214073      170642572  NM_001166108         PALLD
15   chr4  169214073      170642572  NM_001243372         CLCN3
18   chr4  169214073      170642572     NM_012224          NEK1
19   chr4  169214073      170642572     NM_017631         DDX60
20   chr4  169214073      170642572     NM_020870        SH3RF1
21   chr4  169214073      170642572     NM_032783          CBR4
22   chr9   41489400       41604617  NM_001113541     SPATA31A5
23   chr9   41489400       41604617     NM_015667     SPATA31A7
24   chr9   41489400       41604617     NR_003528       ZNF658B
25   chr9   41489400       41604617     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21890617       21992950  NM_001163380     RAB2B
1  chr14   21890617       21992950  NM_001170629      CHD8
2  chr14   21890617       21992950  NM_001303523      TOX4
3  chr14   21890617       21992950     NM_019852    METTL3
6  chr14   21890617       21992950     NR_111966     SALL2
8   chr7    3328478        3466376     NM_152744      SDK1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   95922107       96096080     NM_024725     CCDC82
1   chr11   95922107       96096080     NM_032427      MAML2
2   chr11   95922107       96096080     NR_036125   MIR1260B
3   chr14   21792334       21901566  NM_001170629       CHD8
4   chr14   21792334       21901566     NM_007192    SUPT16H
5   chr14   21792334       21901566     NM_020366    RPGRIP1
7   chr14   21792334       21901566     NR_002916     SNORD8
8   chr14   21792334       21901566     NR_003029     SNORD9
9   chr16   68575144       68791598  NM_001305204      ZFP90
11  chr16   68575144       68791598  NM_001317184       CDH1
12  chr16   68575144       68791598  NM_001317195       CDH3
13  chr16   68575144       68791598     NR_106988  MIR7641-2
14   chr6   83363245       83867230  NM_001199942     DOPEY1
15   chr6   83363245       83867230  NM_001304437      UBE3D,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143749190      146023330  NM_001002810       PDE4DIP
3    chr1  143749190      146023330  NM_001012758        NUDT17
4    chr1  143749190      146023330  NM_001039888      ANKRD34A
5    chr1  143749190      146023330  NM_001097612        GPR89A
6    chr1  143749190      146023330  NM_001123068       PPIAL4G
7    chr1  143749190      146023330  NM_001135789       PPIAL4C
8    chr1  143749190      146023330  NM_001184795        PEX11B
13   chr1  143749190      146023330  NM_001201325         PDZK1
14   chr1  143749190      146023330  NM_001277444         NBPF9
15   chr1  143749190      146023330  NM_001278267        NBPF20
16   chr1  143749190      146023330  NM_001280799       ANKRD35
17   chr1  143749190      146023330  NM_001287385        FAM72C
18   chr1  143749190      146023330  NM_001302371        NBPF10
19   chr1  143749190      146023330  NM_001303040        ITGA10
20   chr1  143749190      146023330  NM_001303456        POLR3C
21   chr1  143749190      146023330  NM_001313972         TXNIP
22   chr1  143749190      146023330  NM_001345942        FAM72D
26   chr1  143749190      146023330     NM_004892        SEC22B
27   chr1  143749190      146023330     NM_005105         RBM8A
28   chr1  143749190      146023330     NM_006099         PIAS3
31   chr1  143749190      146023330     NM_007053         CD160
32   chr1  143749190      146023330     NM_014455        RNF115
34   chr1  143749190      146023330     NM_032305       POLR3GL
35   chr1  143749190      146023330     NM_145277          HFE2
36   chr1  143749190      146023330     NM_153713         LIX1L
37   chr1  143749190      146023330     NM_203458      NOTCH2NL
39   chr1  143749190      146023330     NR_002328        GNRHR2
40   chr1  143749190      146023330     NR_003242        PFN1P2
41   chr1  143749190      146023330     NR_024511     LINC00623
44   chr1  143749190      146023330     NR_102405         NBPF8
47   chr1  143749190      146023330     NR_104217       NBPF25P
49   chr1  143749190      146023330     NR_106794       MIR6736
50   chr1  143749190      146023330     NR_111936       PDZK1P1
51   chr1  143749190      146023330     NR_111953     LINC00869
52   chr1  143749190      146023330     NR_125967  LOC101928979
54  chr15   30313807       30574148  NM_001282472       GOLGA8J
55  chr15   30313807       30574148     NR_026771  DKFZP434L187
56  chr15   30313807       30574148     NR_026859        ULK4P3
57  chr15   30313807       30574148     NR_033933       GOLGA8T
58   chr2   26565189       26736200  NM_001321975        ADGRF3
59   chr2   26565189       26736200     NM_004802          OTOF
60   chr2   26565189       26736200     NM_033505       SELENOI
61   chr2   26565189       26736200     NM_145038          DRC1
64   chr6  129210868      129388598  NM_001079823         LAMA2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   19625401       19766417  NM_001142308        MALRD1
1   chr15   28442403       29175243  NM_001282468       GOLGA8M
2   chr15   28442403       29175243     NM_004667         HERC2
3   chr15   28442403       29175243     NR_026589       WHAMMP2
4   chr15   28442403       29175243     NR_033351       GOLGA8F
6   chr15   28442403       29175243     NR_033353       GOLGA8G
8   chr15   28442403       29175243     NR_036443       HERC2P9
9   chr15   28442403       29175243     NR_036475  LOC100289656
10  chr15   28442403       29175243     NR_037599     PDCD6IPP2
11  chr15   28442403       29175243     NR_039734     MIR4509-3
13  chr15   28442403       29175243     NR_047567     GOLGA6L7P
14   chr2  186548695      186677414     NM_173651         FSIP2
15   chr2  186548695      186677414     NR_110214  LOC101927196
18   chr2  186548695      186677414     NR_144453     FSIP2-AS1
20   chr9   67100403       67344790     NR_002817        AQP7P1
21   chr9   67100403       67344790     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108406177      108511606     NM_006113          VAV3
1    chr1  108406177      108511606     NR_046653      VAV3-AS1
2    chr1  108406177      108511606     NR_107006       MIR7852
3   chr14   21893158       21994427  NM_001163380         RAB2B
4   chr14   21893158       21994427  NM_001170629          CHD8
5   chr14   21893158       21994427  NM_001303523          TOX4
6   chr14   21893158       21994427     NM_019852        METTL3
9   chr14   21893158       21994427     NR_111966         SALL2
11  chr17    3826304        4038425     NM_015113         ZZEF1
12  chr17    3826304        4038425     NM_174955        ATP2A3
13   chr2   31349185       31470315  NM_001145122        CAPN14
14   chr2   31349185       31470315  NM_001253826       GALNT14
18   chr2   31349185       31470315     NM_014600          EHD3
19  chr22   17220123       17468475  NM_001037814          GAB4
20  chr22   17220123       17468475     NM_175878          XKR3
21  chr22   17220123       17468475     NR_003607       HSFY1P1
22  chr22   17220123       17468475     NR_134584  LOC101929350
23   chr4      94872         428860  NM_001039127        ZNF718
24   chr4      94872         428860  NM_001137608        ZNF732
27   chr4      94872         428860     NM_003441        ZNF141
28   chr4      94872         428860     NR_002451       ABCA11P
29   chr4      94872         428860     NR_027481       ZNF876P
30   chr4      94872         428860     NR_030297        MIR571,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21813886       21951619  NM_001163380     RAB2B
1   chr14   21813886       21951619  NM_001170629      CHD8
2   chr14   21813886       21951619  NM_001303523      TOX4
3   chr14   21813886       21951619     NM_007192   SUPT16H
4   chr14   21813886       21951619     NM_020366   RPGRIP1
7   chr14   21813886       21951619     NR_002916    SNORD8
8   chr14   21813886       21951619     NR_003029    SNORD9
9   chr17   21220371       21487440  NM_001113434  C17orf51
10  chr17   21220371       21487440  NM_001194958    KCNJ18
11  chr17   21220371       21487440     NM_021012    KCNJ12,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21905850       22097248  NM_001005465        OR10G3
1   chr14   21905850       22097248  NM_001163380         RAB2B
2   chr14   21905850       22097248  NM_001303523          TOX4
3   chr14   21905850       22097248     NM_019852        METTL3
5   chr14   21905850       22097248     NR_111966         SALL2
7   chr16   21535852       21760770  NM_001077180        METTL9
8   chr16   21535852       21760770  NM_001161683          OTOA
10  chr16   21535852       21760770     NM_005849         IGSF6
13  chr16   21535852       21760770     NR_110930  LOC101927814
14   chr2   25528652       25637051  NM_001256304          DTNB
16   chr2   25528652       25637051  NM_001320892        DNMT3A
22   chr2   25528652       25637051     NR_031570       MIR1301
23   chr3   28942431       29544376  NM_001003792         RBMS3
25   chr3   28942431       29544376     NR_109804     RBMS3-AS3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21677470       23162655  NM_001001912         OR4E2
1   chr14   21677470       23162655  NM_001005465        OR10G3
2   chr14   21677470       23162655  NM_001005466        OR10G2
3   chr14   21677470       23162655  NM_001163380         RAB2B
4   chr14   21677470       23162655  NM_001170629          CHD8
5   chr14   21677470       23162655  NM_001303523          TOX4
6   chr14   21677470       23162655  NM_001317107         OR4E1
7   chr14   21677470       23162655     NM_001344          DAD1
8   chr14   21677470       23162655     NM_007192       SUPT16H
9   chr14   21677470       23162655     NM_019852        METTL3
10  chr14   21677470       23162655     NM_020366       RPGRIP1
12  chr14   21677470       23162655     NM_022060         ABHD4
13  chr14   21677470       23162655     NM_031314        HNRNPC
15  chr14   21677470       23162655     NR_002916        SNORD8
16  chr14   21677470       23162655     NR_003029        SNORD9
17  chr14   21677470       23162655     NR_111966         SALL2
19  chr15   22139702       22321588     NR_015416     LOC727924
20  chr15   22139702       22321588     NR_028506         NF1P2
21  chr15   22139702       22321588     NR_110480  LOC101927079
23  chr15   22139702       22321588     NR_128721     MIR5701-3
24   chr9   28471359       28603501  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21940888       23262243  NM_001001912         OR4E2
1   chr14   21940888       23262243  NM_001005465        OR10G3
2   chr14   21940888       23262243  NM_001005466        OR10G2
3   chr14   21940888       23262243  NM_001126105        SLC7A7
5   chr14   21940888       23262243  NM_001163380         RAB2B
6   chr14   21940888       23262243  NM_001303523          TOX4
7   chr14   21940888       23262243  NM_001317107         OR4E1
8   chr14   21940888       23262243     NM_001344          DAD1
9   chr14   21940888       23262243     NM_005015         OXA1L
10  chr14   21940888       23262243     NM_019852        METTL3
11  chr14   21940888       23262243     NM_022060         ABHD4
14  chr14   21940888       23262243     NR_111966         SALL2
16   chr2   97168833       97310412  NM_001115016        KANSL3
17   chr2   97168833       97310412  NM_001285485        NEURL3
18   chr2   97168833       97310412  NM_001293083        FER1L5
19   chr2   97168833       97310412  NM_001319085        ARID5A
23   chr2   97168833       97310412     NR_135564  LOC105373496
24   chr4   72970930       73241165     NM_004885        NPFFR2
25   chr4   72970930       73241165     NM_014243       ADAMTS3
27   chr6  162331771      162453451     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102445357      102568583     NR_110211         OLFM3
1   chr11   25065382       26662172  NM_001009909         LUZP2
2   chr11   25065382       26662172  NM_001135092         MUC15
3   chr11   25065382       26662172  NM_001313726          ANO3
6   chr11   25065382       26662172     NR_132968  LOC105376599
7   chr11   40312967       40425757  NM_001258419        LRRC4C
9   chr15   98204557       98317959     NR_024172     LINC00923
10  chr20   14791004       14941725     NM_080676       MACROD2
11  chr20   14791004       14941725     NR_037841   MACROD2-AS1
13  chr20   14904753       15025133     NM_080676       MACROD2
14  chr20   14904753       15025133     NR_037841   MACROD2-AS1
16   chr4   16182616       16291699     NM_153365         TAPT1
17   chr4   16182616       16291699     NR_027696     TAPT1-AS1
18   chr7   11764388       13016220  NM_001112706          SCIN
19   chr7   11764388       13016220  NM_001134232      TMEM106B
20   chr7   11764388       13016220  NM_001135924          VWDE
21   chr7   11764388       13016220     NM_005738         ARL4A
22   chr7   11764388       13016220     NM_015204        THSD7A
25   chr7   11764388       13016220     NR_136261  LOC102725191
28   chr9   74694366       74796386  NM_001242505           GDA
30   chr9  119708622      119886612     NM_014010         ASTN2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21831123       21954050  NM_001163380     RAB2B
1   chr14   21831123       21954050  NM_001170629      CHD8
2   chr14   21831123       21954050  NM_001303523      TOX4
3   chr14   21831123       21954050     NM_007192   SUPT16H
6   chr14   21831123       21954050     NR_002916    SNORD8
7   chr14   21831123       21954050     NR_003029    SNORD9
8   chr16   83927687       84041337     NM_012213     MLYCD
9   chr16   83927687       84041337     NM_019065    NECAB2
10  chr16   83927687       84041337     NM_182981    OSGIN1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   67225650       67511443     NM_020403      PCDH9
1   chr13   67225650       67511443     NR_046527  PCDH9-AS2
2   chr14   21885510       22364709  NM_001001912      OR4E2
3   chr14   21885510       22364709  NM_001005465     OR10G3
4   chr14   21885510       22364709  NM_001005466     OR10G2
5   chr14   21885510       22364709  NM_001163380      RAB2B
6   chr14   21885510       22364709  NM_001170629       CHD8
7   chr14   21885510       22364709  NM_001303523       TOX4
8   chr14   21885510       22364709  NM_001317107      OR4E1
9   chr14   21885510       22364709     NM_019852     METTL3
12  chr14   21885510       22364709     NR_111966      SALL2
14   chr9   16785443       16919417     NM_017637       BNC2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   28809121       29031261  NM_001282468    GOLGA8M
1  chr15   28809121       29031261     NR_026589    WHAMMP2
2  chr15   28809121       29031261     NR_036443    HERC2P9
3  chr17   29305771       29437740     NM_000267        NF1
5  chr17   29305771       29437740  NM_001184992     RNF135
7  chr17   29305771       29437740     NR_039886    MIR4733
8  chr20   14652339       14818070     NM_080676    MACROD2
9   chr3     653165        1076174     NR_110118  LINC01266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   86098163       86202235     NM_017953        ZNHIT6
1    chr1   86098163       86202235     NM_152890       COL24A1
2    chr1   87375022       87587198  NM_001134492        HS2ST1
3    chr1   87375022       87587198     NM_004261       SELENOF
5   chr10  135256425      135502311     NM_000773        CYP2E1
6   chr10  135256425      135502311  NM_001080998         FRG2B
7   chr10  135256425      135502311  NM_001143763         SYCE1
10  chr10  135256425      135502311     NR_002934        SCART1
11  chr10  135256425      135502311     NR_033789        SPRNP1
12   chr2  236670127      236853969  NM_001244888         AGAP1
14  chr22   17220278       17510312  NM_001037814          GAB4
15  chr22   17220278       17510312     NM_175878          XKR3
16  chr22   17220278       17510312     NR_003607       HSFY1P1
17  chr22   17220278       17510312     NR_134584  LOC101929350
18   chr4   16221779       16337753     NM_153365         TAPT1
19   chr4   16221779       16337753     NR_027696     TAPT1-AS1
20   chr4   65623932       65952475     NR_033976     LOC401134,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  215783790      215921473  NM_001319294         KCTD3
1    chr1  215783790      215921473     NM_206933         USH2A
2   chr11    6712534        6883460  NM_001004489        OR2AG1
3   chr11    6712534        6883460  NM_001004490        OR2AG2
4   chr11    6712534        6883460     NM_003696         OR6A2
5   chr11    6712534        6883460     NM_178168        OR10A5
6   chr11    6712534        6883460     NR_003945        GVINP1
7   chr16   18119886       18598469  NM_001004060         NOMO2
8   chr16   18119886       18598469  NM_001282511        NPIPA8
9   chr16   18119886       18598469     NR_003569       ABCC6P1
10  chr16   18119886       18598469     NR_036140     MIR3179-1
11  chr16   18119886       18598469     NR_036142     MIR3180-2
12  chr16   18119886       18598469     NR_036144     MIR3180-3
13  chr16   18119886       18598469     NR_037442     MIR3670-1
14  chr16   18119886       18598469     NR_103772  LOC100288162
15  chr16   18119886       18598469     NR_106971     MIR6511A4
16  chr16   18119886       18598469     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142805135      143145893     NR_110761  LOC102723769
1   chr16   16330817       16500887  NM_001004067         NOMO3
2   chr16   16330817       16500887  NM_001282511        NPIPA8
3   chr16   16330817       16500887     NR_036140     MIR3179-1
4   chr16   16330817       16500887     NR_036141     MIR3180-1
5   chr16   16330817       16500887     NR_036142     MIR3180-2
6   chr16   16330817       16500887     NR_036447        PKD1P1
7   chr16   16330817       16500887     NR_103772  LOC100288162
8   chr16   16330817       16500887     NR_106766     MIR6511A1
9   chr16   16330817       16500887     NR_106971     MIR6511A4
10  chr16   16330817       16500887     NR_107060     MIR6770-2
11  chr16   16330817       16500887     NR_128713     MIR3670-4
12  chr17   63571239       63700422  NM_001037325        CEP112
15   chr7   75776290       76231712  NM_001102594          DTX2
17   chr7   75776290       76231712  NM_001110199         SRRM3
18   chr7   75776290       76231712  NM_001110354           ZP3
19   chr7   75776290       76231712     NM_001540         HSPB1
21   chr7   75776290       76231712     NM_012479         YWHAG
22   chr7   75776290       76231712     NM_030570         UPK3B
23   chr7   75776290       76231712     NM_080744         SSC4D
24   chr7   75776290       76231712     NR_003262        FDPSP2
25   chr7   75776290       76231712     NR_029411  LOC100133091,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145274224      145537716  NM_001039888      ANKRD34A
1    chr1  145274224      145537716  NM_001184795        PEX11B
2    chr1  145274224      145537716  NM_001277444         NBPF9
3    chr1  145274224      145537716  NM_001278267        NBPF20
4    chr1  145274224      145537716  NM_001302371        NBPF10
5    chr1  145274224      145537716  NM_001303040        ITGA10
6    chr1  145274224      145537716  NM_001313972         TXNIP
8    chr1  145274224      145537716     NM_005105         RBM8A
10   chr1  145274224      145537716     NM_032305       POLR3GL
11   chr1  145274224      145537716     NM_145277          HFE2
12   chr1  145274224      145537716     NM_153713         LIX1L
13   chr1  145274224      145537716     NM_203458      NOTCH2NL
14   chr1  145274224      145537716     NR_002328        GNRHR2
18   chr1  145274224      145537716     NR_104217       NBPF25P
19   chr1  145274224      145537716     NR_125967  LOC101928979
20  chr11   48262846       48394647  NM_001004702         OR4C3
21  chr11   48262846       48394647  NM_001004725         OR4S1
22  chr11   48262846       48394647  NM_001004726         OR4X1
23  chr11   48262846       48394647  NM_001004727         OR4X2
24  chr11   48262846       48394647  NM_001005513        OR4C45
25  chr16   18103067       18664369  NM_001004060         NOMO2
26  chr16   18103067       18664369  NM_001282511        NPIPA8
27  chr16   18103067       18664369     NR_003569       ABCC6P1
28  chr16   18103067       18664369     NR_036140     MIR3179-1
29  chr16   18103067       18664369     NR_036142     MIR3180-2
30  chr16   18103067       18664369     NR_036144     MIR3180-3
31  chr16   18103067       18664369     NR_037442     MIR3670-1
32  chr16   18103067       18664369     NR_103772  LOC100288162
33  chr16   18103067       18664369     NR_106971     MIR6511A4
34  chr16   18103067       18664369     NR_107060     MIR6770-2
35   chr9   17900934       19107014  NM_001040272      ADAMTSL1
36   chr9   17900934       19107014  NM_001270890         HAUS6
37   chr9   17900934       19107014  NM_001287049         SAXO1
39   chr9   17900934       19107014     NM_006570         RRAGA
41   chr9   17900934       19107014     NR_003009       SCARNA8
42   chr9   17900934       19107014     NR_036107       MIR3152
43   chr9   41900160       42005057     NR_003670        FGF7P3
44   chr9   41900160       42005057     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   23401991       23991396     NR_107021   MIR8054
1   chr14   21771441       22310335  NM_001001912     OR4E2
2   chr14   21771441       22310335  NM_001005465    OR10G3
3   chr14   21771441       22310335  NM_001005466    OR10G2
4   chr14   21771441       22310335  NM_001163380     RAB2B
5   chr14   21771441       22310335  NM_001170629      CHD8
6   chr14   21771441       22310335  NM_001303523      TOX4
7   chr14   21771441       22310335  NM_001317107     OR4E1
8   chr14   21771441       22310335     NM_007192   SUPT16H
9   chr14   21771441       22310335     NM_019852    METTL3
10  chr14   21771441       22310335     NM_020366   RPGRIP1
13  chr14   21771441       22310335     NR_002916    SNORD8
14  chr14   21771441       22310335     NR_003029    SNORD9
15  chr14   21771441       22310335     NR_111966     SALL2
17   chr2   49119188       49270164     NM_181446      FSHR
18   chr2  110115120      110223564  NM_001099289    SH3RF3
19   chr4  169210719      169506534  NM_001012967    DDX60L
20   chr4  169210719      169506534  NM_001166108     PALLD
22   chr4  169210719      169506534     NM_017631     DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21522088       21872558  NM_001077180        METTL9
1   chr16   21522088       21872558  NM_001161683          OTOA
3   chr16   21522088       21872558  NM_001310148        NPIPB4
4   chr16   21522088       21872558     NM_005849         IGSF6
7   chr16   21522088       21872558     NR_002594      SLC7A5P2
8   chr16   21522088       21872558     NR_003370        RRN3P1
9   chr16   21522088       21872558     NR_110930  LOC101927814
10  chr22   17245059       17554694  NM_001037814          GAB4
11  chr22   17245059       17554694     NM_175878          XKR3
12  chr22   17245059       17554694     NR_003607       HSFY1P1
13  chr22   17245059       17554694     NR_015352         CECR7
14   chr3    4055628        4598918  NM_001164675         SUMF1
15   chr3    4055628        4598918  NM_001168272         ITPR1
16   chr3    4055628        4598918  NM_001243723        SETMAR
18   chr3    4055628        4598918     NR_108075     ITPR1-AS1
19   chr5  119993894      120271288  NM_001300783         PRR16
22   chr7   71494383       71626808  NM_001017440         CALN1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   21816068       22052812  NM_001005465      OR10G3
1   chr14   21816068       22052812  NM_001163380       RAB2B
2   chr14   21816068       22052812  NM_001170629        CHD8
3   chr14   21816068       22052812  NM_001303523        TOX4
4   chr14   21816068       22052812     NM_007192     SUPT16H
5   chr14   21816068       22052812     NM_019852      METTL3
6   chr14   21816068       22052812     NM_020366     RPGRIP1
9   chr14   21816068       22052812     NR_002916      SNORD8
10  chr14   21816068       22052812     NR_003029      SNORD9
11  chr14   21816068       22052812     NR_111966       SALL2
13  chr15   28201946       28336691     NM_000275        OCA2
15   chr3  159955544      160104145  NM_001190241       IFT80
17   chr6  146394965      146572682  NM_001278064        GRM1
19   chr8    6980950        7219054  NM_001164457     ZNF705G
20   chr8    6980950        7219054  NM_001256873     USP17L1
21   chr8    6980950        7219054  NM_001256874     USP17L4
22   chr8    6980950        7219054     NR_003668  DEFB109P1B
23   chr8    6980950        7219054     NR_027000   LINC00965
26   chr8    6980950        7219054     NR_027423      FAM66B,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr1  142743798      143305100  NR_110761  LOC102723769,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   19604241       20052212  NM_001142308        MALRD1
1   chr10   19604241       20052212     NR_120646  LOC101928834
2   chr14   21830086       21974978  NM_001163380         RAB2B
3   chr14   21830086       21974978  NM_001170629          CHD8
4   chr14   21830086       21974978  NM_001303523          TOX4
5   chr14   21830086       21974978     NM_007192       SUPT16H
6   chr14   21830086       21974978     NM_019852        METTL3
9   chr14   21830086       21974978     NR_002916        SNORD8
10  chr14   21830086       21974978     NR_003029        SNORD9
11  chr20   14728956       14920235     NM_080676       MACROD2
12  chr20   14728956       14920235     NR_037841   MACROD2-AS1
14   chr8    7901864        8055069     NR_031689      MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   36180433       36581932     NR_039735    MIR4510
1   chr22   19004717       19301950  NM_001184781      DGCR2
2   chr22   19004717       19301950  NM_001256534    SLC25A1
3   chr22   19004717       19301950     NM_001835     CLTCL1
4   chr22   19004717       19301950     NM_005315       GSC2
6   chr22   19004717       19301950     NM_022719     DGCR14
7   chr22   19004717       19301950     NM_053006      TSSK2
8   chr22   19004717       19301950     NR_024157     DGCR11
9   chr22   19004717       19301950     NR_024159      DGCR9
10  chr22   19004717       19301950     NR_026651     DGCR10
11  chr22   19004717       19301950     NR_103767  LINC01311
12  chr22   19004717       19301950     NR_110533      DGCR5
13   chr7  110617029      110753538  NM_001099658      LRRN3
14   chr7  110617029      110753538  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244977204      245108217  NM_001312871         COX20
2    chr1  244977204      245108217     NM_004501        HNRNPU
4    chr1  244977204      245108217     NR_132782      SNORA100
5   chr12    9391041        9523466     NR_024374     LOC642846
6   chr12    9391041        9523466     NR_036466     LINC00987
7   chr12    9391041        9523466     NR_120479  LOC101930452
8   chr12    9391041        9523466     NR_128710     MIR1244-4
10  chr14   21798391       22014387  NM_001163380         RAB2B
11  chr14   21798391       22014387  NM_001170629          CHD8
12  chr14   21798391       22014387  NM_001303523          TOX4
13  chr14   21798391       22014387     NM_007192       SUPT16H
14  chr14   21798391       22014387     NM_019852        METTL3
15  chr14   21798391       22014387     NM_020366       RPGRIP1
18  chr14   21798391       22014387     NR_002916        SNORD8
19  chr14   21798391       22014387     NR_003029        SNORD9
20  chr14   21798391       22014387     NR_111966         SALL2
22  chr19   33151538       33253313  NM_001105570        NUDT19
23  chr19   33151538       33253313  NM_001110822        TDRD12
24  chr19   33151538       33253313     NM_032139       ANKRD27
25  chr19   33151538       33253313     NM_207391        RGS9BP
26   chr9  119650088      120239166     NM_014010         ASTN2
27   chr9  119650088      120239166     NR_003708      SNORA70C,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   21588123       21704286  NM_001004731     OR5AU1
1  chr14   21588123       21704286     NM_031314     HNRNPC
2  chr14   21588123       21704286     NR_038970  LINC00641
4  chr16   16452719       16821978  NM_001282511     NPIPA8
5  chr16   16452719       16821978     NR_106971  MIR6511A4
6   chr9   17164220       17279897  NM_001114395      CNTLN,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr14   21919386       22027773  NM_001163380              RAB2B
1   chr14   21919386       22027773  NM_001303523               TOX4
2   chr14   21919386       22027773     NM_019852             METTL3
4   chr14   21919386       22027773     NR_111966              SALL2
6    chr2   35648178       37242240  NM_001177969                VIT
8    chr2   35648178       37242240     NM_003162               STRN
9    chr2   35648178       37242240     NM_005102               FEZ2
10   chr2   35648178       37242240     NM_016441              CRIM1
11   chr2   35648178       37242240     NM_019024            HEATR5B
12   chr2   35648178       37242240     NR_037631       LOC100288911
13   chr2   35648178       37242240     NR_039629           MIR548AD
14  chr22   17016801       17438258     NM_014406             CCT8L2
15  chr22   17016801       17438258     NM_175878               XKR3
16  chr22   17016801       17438258     NR_001591             TPTEP1
17  chr22   17016801       17438258     NR_003607            HSFY1P1
18  chr22   17016801       17438258     NR_040115  ANKRD62P1-PARP4P3
19  chr22   17016801       17438258     NR_134584       LOC101929350
20   chr3   26004475       27023356  NM_001317808             LRRC3B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48341878       48599323  NM_001004702         OR4C3
1   chr11   48341878       48599323  NM_001005512        OR4A47
2   chr11   48341878       48599323  NM_001005513        OR4C45
3   chr16   16318237       16462910  NM_001004067         NOMO3
4   chr16   16318237       16462910     NR_036140     MIR3179-1
5   chr16   16318237       16462910     NR_036141     MIR3180-1
6   chr16   16318237       16462910     NR_036142     MIR3180-2
7   chr16   16318237       16462910     NR_036447        PKD1P1
8   chr16   16318237       16462910     NR_103772  LOC100288162
9   chr16   16318237       16462910     NR_106766     MIR6511A1
10  chr16   16318237       16462910     NR_106971     MIR6511A4
11  chr16   16318237       16462910     NR_107060     MIR6770-2
12  chr16   16318237       16462910     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   77652452       77795920  NM_001304505        HMG20A
1   chr15   77652452       77795920     NM_024776         PEAK1
2   chr20   14845379       15073485     NM_080676       MACROD2
3   chr20   14845379       15073485     NR_037841   MACROD2-AS1
5    chr5   99529082       99751738     NR_027503  LOC100133050
6    chr6  162779028      162880103     NM_013988         PARK2
7    chr7  110406405      110513317  NM_001244606        IMMP2L
9    chr9   41884765       42150314     NR_003670        FGF7P3
10   chr9   41884765       42150314     NR_015363         GLIDR
13   chr9   41884765       42150314     NR_126048  LOC102724238
14   chr9   41884765       42150314     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   67497415       67610939     NM_020806          GPHN
1   chr16   18298064       18552162  NM_001004060         NOMO2
2   chr16   18298064       18552162  NM_001282511        NPIPA8
3   chr16   18298064       18552162     NR_036140     MIR3179-1
4   chr16   18298064       18552162     NR_036142     MIR3180-2
5   chr16   18298064       18552162     NR_036144     MIR3180-3
6   chr16   18298064       18552162     NR_037442     MIR3670-1
7   chr16   18298064       18552162     NR_103772  LOC100288162
8   chr16   18298064       18552162     NR_106971     MIR6511A4
9   chr16   18298064       18552162     NR_107060     MIR6770-2
10   chr2     899946        1006703     NM_018968         SNTG2
11   chr2     899946        1006703     NR_110179  LOC101060385
12   chr2     899946        1006703     NR_136151  LOC101060391
13  chr20   14637558       14803658     NM_080676       MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68019940       68130809  NM_001127384        CTNNA3
2   chr16   21775891       21884606  NM_001310148        NPIPB4
3   chr16   21775891       21884606     NR_003370        RRN3P1
4    chr6  136811165      137480695     NM_000288          PEX7
5    chr6  136811165      137480695  NM_001008783       SLC35D3
6    chr6  136811165      137480695  NM_001198608          MAP7
9    chr6  136811165      137480695  NM_001278722        IL20RA
12   chr6  136811165      137480695     NM_005923        MAP3K5
13   chr6  136811165      137480695     NM_052962       IL22RA2
14   chr6  136811165      137480695     NR_027994         NHEG1
15   chr6  136811165      137480695     NR_125858  LOC101928461
16   chr6  136811165      137480695     NR_134635  LOC101928429
17   chr8    4147339        4282657     NM_033225         CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108363535      108466116     NM_006113          VAV3
1    chr1  108363535      108466116     NR_107006       MIR7852
2    chr1  145090945      145570144  NM_001039888      ANKRD34A
3    chr1  145090945      145570144  NM_001184795        PEX11B
4    chr1  145090945      145570144  NM_001277444         NBPF9
5    chr1  145090945      145570144  NM_001278267        NBPF20
6    chr1  145090945      145570144  NM_001280799       ANKRD35
7    chr1  145090945      145570144  NM_001302371        NBPF10
8    chr1  145090945      145570144  NM_001303040        ITGA10
9    chr1  145090945      145570144  NM_001313972         TXNIP
11   chr1  145090945      145570144     NM_004892        SEC22B
12   chr1  145090945      145570144     NM_005105         RBM8A
14   chr1  145090945      145570144     NM_032305       POLR3GL
15   chr1  145090945      145570144     NM_145277          HFE2
16   chr1  145090945      145570144     NM_153713         LIX1L
17   chr1  145090945      145570144     NM_203458      NOTCH2NL
18   chr1  145090945      145570144     NR_002328        GNRHR2
22   chr1  145090945      145570144     NR_104217       NBPF25P
23   chr1  145090945      145570144     NR_125967  LOC101928979
24  chr14   21754345       21886296  NM_001170629          CHD8
25  chr14   21754345       21886296     NM_007192       SUPT16H
26  chr14   21754345       21886296     NM_020366       RPGRIP1
28  chr14   21754345       21886296     NR_002916        SNORD8
29  chr14   21754345       21886296     NR_003029        SNORD9
30  chr20   14843983       14999454     NM_080676       MACROD2
31  chr20   14843983       14999454     NR_037841   MACROD2-AS1
33   chr7   80094950       80307595     NM_000072          CD36
36   chr7   80094950       80307595  NM_001102386         GNAT3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   84703940       84834270     NM_001370         DNAH6
1   chr3  176549837      176760484  NM_001321193       TBL1XR1
3   chr7  132705782      133054624  NM_001037126         EXOC4
4   chr7  132705782      133054624  NM_001317178        CHCHD3
7   chr7  132705782      133054624     NR_037427       MIR3654
8   chr7  132705782      133054624     NR_106749       MIR6133
9   chr7  132705782      133054624     NR_133931  LOC105375512
10  chr8    7891981        8000972     NR_031689      MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67625318       67726444  NM_001127384        CTNNA3
2   chr15   28624517       28970186  NM_001282468       GOLGA8M
3   chr15   28624517       28970186     NR_033351       GOLGA8F
5   chr15   28624517       28970186     NR_033353       GOLGA8G
7   chr15   28624517       28970186     NR_036443       HERC2P9
8   chr15   28624517       28970186     NR_039734     MIR4509-3
10  chr16   18392718       18609937  NM_001004060         NOMO2
11  chr16   18392718       18609937  NM_001282511        NPIPA8
12  chr16   18392718       18609937     NR_003569       ABCC6P1
13  chr16   18392718       18609937     NR_036140     MIR3179-1
14  chr16   18392718       18609937     NR_036142     MIR3180-2
15  chr16   18392718       18609937     NR_036144     MIR3180-3
16  chr16   18392718       18609937     NR_037442     MIR3670-1
17  chr16   18392718       18609937     NR_103772  LOC100288162
18  chr16   18392718       18609937     NR_106971     MIR6511A4
19  chr16   18392718       18609937     NR_107060     MIR6770-2
20  chr18   67821846       68353296  NM_001278515        GTSCR1
21  chr18   67821846       68353296  NM_001318520          RTTN
22  chr18   67821846       68353296     NM_004232         SOCS6
23  chr18   67821846       68353296     NR_110764  LOC101060542
24  chr18   67821846       68353296     NR_126336  LOC101927481
25   chr4  169220121      169406565  NM_001012967        DDX60L
27   chr4  169220121      169406565     NM_017631         DDX60,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  190869782      192263091     NM_130782     RGS18
1   chr14   21936681       22073083  NM_001005465    OR10G3
2   chr14   21936681       22073083  NM_001163380     RAB2B
3   chr14   21936681       22073083  NM_001303523      TOX4
4   chr14   21936681       22073083     NM_019852    METTL3
6   chr14   21936681       22073083     NR_111966     SALL2
8   chr19   47847493       47957156  NM_001009813     MEIS3
11  chr19   47847493       47957156     NM_014681     DHX34
12  chr19   47847493       47957156     NM_015063    SLC8A2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr13   54835938       55078338     NR_031628     MIR1297
1    chr2    1118888        1334963     NM_018968       SNTG2
2    chr2  234400198      234574098     NM_018218       USP40
3    chr2  234400198      234574098     NM_019075     UGT1A10
4    chr2  234400198      234574098     NM_019076      UGT1A8
5   chr21   13607606       14773804     NR_026916  ANKRD30BP2
6   chr22   17255146       17551651  NM_001037814        GAB4
7   chr22   17255146       17551651     NM_175878        XKR3
8   chr22   17255146       17551651     NR_003607     HSFY1P1
9   chr22   17255146       17551651     NR_015352       CECR7
10   chr7    6807910        6947494  NM_001099697    RSPH10B2
11   chr7    6807910        6947494     NM_198097       CCZ1B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16406514       16597059  NM_001282511        NPIPA8
1   chr16   16406514       16597059     NR_036447        PKD1P1
2   chr16   16406514       16597059     NR_103772  LOC100288162
3   chr16   16406514       16597059     NR_106766     MIR6511A1
4   chr16   16406514       16597059     NR_106971     MIR6511A4
5   chr16   16406514       16597059     NR_107060     MIR6770-2
6    chr7   75763105       76350857  NM_001102594          DTX2
8    chr7   75763105       76350857  NM_001110199         SRRM3
9    chr7   75763105       76350857  NM_001110354           ZP3
10   chr7   75763105       76350857     NM_001540         HSPB1
12   chr7   75763105       76350857     NM_012479         YWHAG
13   chr7   75763105       76350857     NM_030570         UPK3B
14   chr7   75763105       76350857     NM_080744         SSC4D
15   chr7   75763105       76350857     NM_152992        POMZP3
16   chr7   75763105       76350857     NR_003262        FDPSP2
17   chr7   75763105       76350857     NR_029411  LOC100133091,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102380017      102530055     NR_110211         OLFM3
1   chr15   28120589       29419111     NM_000275          OCA2
2   chr15   28120589       29419111  NM_001130414         APBA2
3   chr15   28120589       29419111  NM_001282468       GOLGA8M
5   chr15   28120589       29419111     NM_004667         HERC2
6   chr15   28120589       29419111     NM_015307      FAM189A1
7   chr15   28120589       29419111     NR_026589       WHAMMP2
8   chr15   28120589       29419111     NR_033351       GOLGA8F
10  chr15   28120589       29419111     NR_033353       GOLGA8G
12  chr15   28120589       29419111     NR_036443       HERC2P9
13  chr15   28120589       29419111     NR_036475  LOC100289656
14  chr15   28120589       29419111     NR_037599     PDCD6IPP2
15  chr15   28120589       29419111     NR_039734     MIR4509-3
17  chr15   28120589       29419111     NR_047567     GOLGA6L7P
18   chr2    1132269        1312827     NM_018968         SNTG2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   55715858       56768136  NM_001271014          KTN1
1   chr14   55715858       56768136     NM_014924         ATG14
2   chr14   55715858       56768136     NM_017943        FBXO34
3   chr14   55715858       56768136     NM_021255         PELI2
5   chr14   55715858       56768136     NM_199047         TBPL2
6   chr14   55715858       56768136     NR_004844      RPL13AP3
7   chr14   55715858       56768136     NR_026796     LINC00520
8   chr14   55715858       56768136     NR_027123      KTN1-AS1
9   chr15   28633580       29928858  NM_001130414         APBA2
10  chr15   28633580       29928858  NM_001282468       GOLGA8M
11  chr15   28633580       29928858     NM_015307      FAM189A1
12  chr15   28633580       29928858     NM_138704        NSMCE3
13  chr15   28633580       29928858     NR_026589       WHAMMP2
14  chr15   28633580       29928858     NR_033351       GOLGA8F
16  chr15   28633580       29928858     NR_033353       GOLGA8G
18  chr15   28633580       29928858     NR_036443       HERC2P9
19  chr15   28633580       29928858     NR_036475  LOC100289656
20  chr15   28633580       29928858     NR_037599     PDCD6IPP2
21  chr15   28633580       29928858     NR_039734     MIR4509-3
23  chr15   28633580       29928858     NR_047567     GOLGA6L7P
24   chr7   64091177       64329281  NM_001160183        ZNF138
25   chr7   64091177       64329281  NM_001282360        ZNF107
28   chr7   64091177       64329281     NR_106898       MIR6839
29   chr7  110611545      110769509  NM_001099658         LRRN3
30   chr7  110611545      110769509  NM_001244606        IMMP2L
32   chr9   39083830       39361553  NM_001085452     SPATA31A1
33   chr9   39083830       39361553     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   95836228       96011652     NM_032427         MAML2
1  chr16   16419331       16715503  NM_001282511        NPIPA8
2  chr16   16419331       16715503     NR_036447        PKD1P1
3  chr16   16419331       16715503     NR_103772  LOC100288162
4  chr16   16419331       16715503     NR_106971     MIR6511A4
5  chr16   16419331       16715503     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   25581544       26804409  NM_001135092         MUC15
1   chr11   25581544       26804409  NM_001313726          ANO3
4   chr11   25581544       26804409     NM_178498       SLC5A12
5   chr11   25581544       26804409     NR_132968  LOC105376599
6   chr14   21918307       22020772  NM_001163380         RAB2B
7   chr14   21918307       22020772  NM_001303523          TOX4
8   chr14   21918307       22020772     NM_019852        METTL3
10  chr14   21918307       22020772     NR_111966         SALL2
12  chr16   68549397       69974663     NM_000903          NQO1
13  chr16   68549397       69974663  NM_001039690         CHTF8
15  chr16   68549397       69974663  NM_001199280          HAS3
16  chr16   68549397       69974663  NM_001199434          NIP7
17  chr16   68549397       69974663  NM_001270453          WWP2
21  chr16   68549397       69974663  NM_001305204         ZFP90
23  chr16   68549397       69974663  NM_001317184          CDH1
24  chr16   68549397       69974663  NM_001317195          CDH3
26  chr16   68549397       69974663     NM_005652         TERF2
27  chr16   68549397       69974663     NM_006750         SNTB2
28  chr16   68549397       69974663     NM_013245         VPS4A
29  chr16   68549397       69974663     NM_022341           PDF
30  chr16   68549397       69974663     NM_024562        TANGO6
31  chr16   68549397       69974663     NM_030579         CYB5B
32  chr16   68549397       69974663     NM_032382          COG8
33  chr16   68549397       69974663     NM_032830          UTP4
35  chr16   68549397       69974663     NM_144676         TMED6
36  chr16   68549397       69974663     NM_173214         NFAT5
39  chr16   68549397       69974663     NR_029681        MIR140
40  chr16   68549397       69974663     NR_031719       MIR1538
41  chr16   68549397       69974663     NR_074074          NOB1
42  chr16   68549397       69974663     NR_106988     MIR7641-2
43   chr2  193629842      193753068     NR_002769        PCGEM1
44   chr4    8994654        9442995  NM_001242326      USP17L25
52   chr4    8994654        9442995  NM_001256852      USP17L10
53   chr4    8994654        9442995  NM_001256853      USP17L12
55   chr4    8994654        9442995  NM_001256854      USP17L11
58   chr4    8994654        9442995  NM_001256855      USP17L13
59   chr4    8994654        9442995  NM_001256857      USP17L17
60   chr4    8994654        9442995  NM_001256860      USP17L19
61   chr4    8994654        9442995  NM_001256861      USP17L20
62   chr4    8994654        9442995  NM_001256894      USP17L15
63   chr4    8994654        9442995     NR_027279      USP17L6P
64   chr4    8994654        9442995     NR_046416      USP17L9P
65   chr9    9906790       10008556     NM_002839         PTPRD
66   chr9   17935715       18474609  NM_001040272      ADAMTSL1,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr16   14694766       15012606  NM_001134477               PARN
1   chr16   14694766       15012606  NM_001277323             NPIPA3
3   chr16   14694766       15012606  NM_001277324             NPIPA2
5   chr16   14694766       15012606     NM_014287              NOMO1
6   chr16   14694766       15012606     NM_016561               BFAR
7   chr16   14694766       15012606     NR_023387            ABCC6P2
8   chr16   14694766       15012606     NR_036140          MIR3179-1
9   chr16   14694766       15012606     NR_036141          MIR3180-1
10  chr16   14694766       15012606     NR_036142          MIR3180-2
11  chr16   14694766       15012606     NR_128713          MIR3670-4
12  chr16   14694766       15012606     NR_133651            PLA2G10
13  chr22   17078209       17348444     NM_175878               XKR3
14  chr22   17078209       17348444     NR_001591             TPTEP1
15  chr22   17078209       17348444     NR_003607            HSFY1P1
16  chr22   17078209       17348444     NR_040115  ANKRD62P1-PARP4P3
17  chr22   17078209       17348444     NR_134584       LOC101929350
18   chr3   60087481       60236003  NM_001320899               FHIT,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21770558       21884763  NM_001170629       CHD8
1   chr14   21770558       21884763     NM_007192    SUPT16H
2   chr14   21770558       21884763     NM_020366    RPGRIP1
4   chr14   21770558       21884763     NR_002916     SNORD8
5   chr14   21770558       21884763     NR_003029     SNORD9
6    chr2  108747892      109394802  NM_001008743    SULT1C3
7    chr2  108747892      109394802     NM_001056    SULT1C2
8    chr2  108747892      109394802  NM_001193482      LIMS1
15   chr2  108747892      109394802     NM_006267     RANBP2
16   chr2  108747892      109394802     NM_006588    SULT1C4
17   chr2  108747892      109394802     NR_028063       GCC2
18   chr2  108747892      109394802     NR_037191  SULT1C2P1
19   chr2  108747892      109394802     NR_131251  LINC01594
20   chr2  108747892      109394802     NR_135290   GCC2-AS1
21   chr4    8562805        8802336  NM_001014447        CPZ
22   chr4    8562805        8802336     NM_080819      GPR78
24   chr4   35220349       36667133  NM_001136536      DTHD1
26   chr4   35220349       36667133     NM_015230      ARAP2
27   chr4   35220349       36667133     NR_031701  MIR1255B1
28   chr4   35220349       36667133     NR_122079  LOC439933,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   79583221       79730512     NM_004796         NRXN3
2   chr14   79583221       79730512     NR_135159  LOC105370586
3   chr15   28590210       29018635  NM_001282468       GOLGA8M
4   chr15   28590210       29018635     NR_026589       WHAMMP2
5   chr15   28590210       29018635     NR_033351       GOLGA8F
7   chr15   28590210       29018635     NR_033353       GOLGA8G
9   chr15   28590210       29018635     NR_036443       HERC2P9
10  chr15   28590210       29018635     NR_039734     MIR4509-3
12  chr16   16460232       16566687  NM_001282511        NPIPA8
13  chr16   16460232       16566687     NR_106971     MIR6511A4
14  chr20   14778113       14884568     NM_080676       MACROD2
15  chr20   14778113       14884568     NR_037841   MACROD2-AS1
16  chr22   17248230       17350275     NM_175878          XKR3
17  chr22   17248230       17350275     NR_003607       HSFY1P1,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr15   24371786       24550672  NR_026647     PWRN2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143074760      143200922     NR_110761  LOC102723769
1   chr12   86288602       87263968     NM_013244        MGAT4C
2   chr14   21758714       21863687  NM_001170629          CHD8
3   chr14   21758714       21863687     NM_007192       SUPT16H
4   chr14   21758714       21863687     NM_020366       RPGRIP1
6   chr14   21758714       21863687     NR_003029        SNORD9
7   chr15   79745727       79892335     NM_015206      KIAA1024
8    chr4  189876704      190654625     NR_121679     LINC01262
9    chr4  189876704      190654625     NR_135513  LOC105379514
10   chr5   15970710       16100280  NM_001102562       MARCH11
11   chr7  110690146      110887121  NM_001099658         LRRN3
12   chr7  110690146      110887121  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21849045       21967294  NM_001163380     RAB2B
1   chr14   21849045       21967294  NM_001170629      CHD8
2   chr14   21849045       21967294  NM_001303523      TOX4
3   chr14   21849045       21967294     NM_007192   SUPT16H
4   chr14   21849045       21967294     NM_019852    METTL3
7   chr14   21849045       21967294     NR_002916    SNORD8
8   chr14   21849045       21967294     NR_003029    SNORD9
9    chr2  236640993      236745701  NM_001244888     AGAP1
11   chr9     232253         857000  NM_001190458     DOCK8
12   chr9     232253         857000  NM_001256876     KANK1
14   chr9     232253         857000     NM_021951     DMRT1
17   chr9   41562569       41701921     NR_003528   ZNF658B,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   21463366       21644283  NM_001077180        METTL9
2  chr16   21463366       21644283     NR_002594      SLC7A5P2
3  chr16   21463366       21644283     NR_027155        SMG1P3
4  chr16   21463366       21644283     NR_049833     MIR3680-2
5  chr16   21463366       21644283     NR_110930  LOC101927814
6  chr22   17262728       17471395  NM_001037814          GAB4
7  chr22   17262728       17471395     NM_175878          XKR3
8  chr22   17262728       17471395     NR_003607       HSFY1P1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12849056       12959898  NM_001009611    PRAMEF4
1    chr1   12849056       12959898  NM_001013631   HNRNPCL1
2    chr1   12849056       12959898  NM_001146181   HNRNPCL3
3    chr1   12849056       12959898  NM_001146344   PRAMEF11
4    chr1   12849056       12959898  NM_001294139    PRAMEF1
5    chr1   12849056       12959898  NM_001302551   HNRNPCL4
7    chr1   12849056       12959898     NM_023014    PRAMEF2
8    chr2   51239001       51359381  NM_001330079      NRXN1
11   chr2   51239001       51359381     NR_135237  LOC730100
12  chr22   19032835       19172482  NM_001184781      DGCR2
13  chr22   19032835       19172482  NM_001256534    SLC25A1
14  chr22   19032835       19172482     NM_001835     CLTCL1
15  chr22   19032835       19172482     NM_005315       GSC2
17  chr22   19032835       19172482     NM_022719     DGCR14
18  chr22   19032835       19172482     NM_053006      TSSK2
19  chr22   19032835       19172482     NR_024157     DGCR11
20  chr22   19032835       19172482     NR_103767  LINC01311
21   chr3  176591192      176744442  NM_001321193    TBL1XR1
23   chr7  108429165      108585654  NM_001024607    C7orf66
24   chr8    3708395        3812088     NM_033225      CSMD1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21736854       23172344  NM_001001912     OR4E2
1   chr14   21736854       23172344  NM_001005465    OR10G3
2   chr14   21736854       23172344  NM_001005466    OR10G2
3   chr14   21736854       23172344  NM_001163380     RAB2B
4   chr14   21736854       23172344  NM_001170629      CHD8
5   chr14   21736854       23172344  NM_001303523      TOX4
6   chr14   21736854       23172344  NM_001317107     OR4E1
7   chr14   21736854       23172344     NM_001344      DAD1
8   chr14   21736854       23172344     NM_007192   SUPT16H
9   chr14   21736854       23172344     NM_019852    METTL3
10  chr14   21736854       23172344     NM_020366   RPGRIP1
12  chr14   21736854       23172344     NM_022060     ABHD4
13  chr14   21736854       23172344     NM_031314    HNRNPC
15  chr14   21736854       23172344     NR_002916    SNORD8
16  chr14   21736854       23172344     NR_003029    SNORD9
17  chr14   21736854       23172344     NR_111966     SALL2
19   chr3    1135255        1288128  NM_001289081     CNTN6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102432790      102813596     NR_110211         OLFM3
1    chr1  245035137      245294177  NM_001143943        EFCAB2
4    chr1  245035137      245294177     NR_111907  LOC101928068
5   chr12   71472424       71612464     NM_004616        TSPAN8
6   chr15   29777964       29944772     NM_015307      FAM189A1
7   chr16   18065639       18470431  NM_001282511        NPIPA8
8   chr16   18065639       18470431     NR_103772  LOC100288162
9   chr16   18065639       18470431     NR_106971     MIR6511A4
10  chr17   21369378       21515485  NM_001113434      C17orf51
11   chr4   16168740       16500763     NM_153365         TAPT1
12   chr4   16168740       16500763     NR_027696     TAPT1-AS1
13   chr4   69007077       69148970     NM_182502     TMPRSS11B
14   chr4   69007077       69148970     NR_015446        FTLP10
15   chr4   69007077       69148970     NR_104048   TMPRSS11BNL
16   chr4   94038176       94158635     NM_001510         GRID2
17   chr7   64067171       64455351  NM_001007253        ERV3-1
18   chr7   64067171       64455351  NM_001160183        ZNF138
19   chr7   64067171       64455351  NM_001282360        ZNF107
20   chr7   64067171       64455351     NM_015852        ZNF117
21   chr7   64067171       64455351     NM_021148        ZNF273
23   chr7   64067171       64455351     NR_077227  LOC100128885
25   chr7   64067171       64455351     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28584932       29993456  NM_001130414         APBA2
1   chr15   28584932       29993456  NM_001282468       GOLGA8M
2   chr15   28584932       29993456  NM_001301025          TJP1
5   chr15   28584932       29993456     NM_015307      FAM189A1
6   chr15   28584932       29993456     NM_138704        NSMCE3
7   chr15   28584932       29993456     NR_026589       WHAMMP2
8   chr15   28584932       29993456     NR_033351       GOLGA8F
10  chr15   28584932       29993456     NR_033353       GOLGA8G
12  chr15   28584932       29993456     NR_036443       HERC2P9
13  chr15   28584932       29993456     NR_036475  LOC100289656
14  chr15   28584932       29993456     NR_037599     PDCD6IPP2
15  chr15   28584932       29993456     NR_039734     MIR4509-3
17  chr15   28584932       29993456     NR_047567     GOLGA6L7P
18  chr15   28584932       29993456     NR_135221  LOC100130111
19  chr18     569498         840449  NM_001012716        TYMSOS
20  chr18     569498         840449     NM_001071          TYMS
21  chr18     569498         840449  NM_001126123        ENOSF1
22  chr18     569498         840449  NM_001289036         CLUL1
26  chr18     569498         840449     NM_004066         CETN1
27  chr18     569498         840449     NM_005433          YES1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82198357       82310511  NM_001297704        ADGRL2
2    chr1  143689206      144010059  NM_001123068       PPIAL4G
3    chr1  143689206      144010059  NM_001287385        FAM72C
4    chr1  143689206      144010059  NM_001345942        FAM72D
8    chr1  143689206      144010059     NR_104014     LINC01138
9    chr1  143689206      144010059     NR_111930  LOC100132057
11  chr20   14763995       16321681  NM_001033087       MACROD2
12  chr20   14763995       16321681     NM_024704        KIF16B
14  chr20   14763995       16321681     NR_037841   MACROD2-AS1
16  chr20   14763995       16321681     NR_130924     LOC613266
18   chr7   75732757       75836193  NM_001110199         SRRM3
19   chr7   75732757       75836193     NR_135079       GTF2IP7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   62447980       62700894  NM_001252079         USP15
2   chr12   62447980       62700894     NM_178539       FAM19A2
3   chr12   62447980       62700894     NR_106740       MIR6125
4   chr14   21931489       22086067  NM_001005465        OR10G3
5   chr14   21931489       22086067  NM_001163380         RAB2B
6   chr14   21931489       22086067  NM_001303523          TOX4
7   chr14   21931489       22086067     NM_019852        METTL3
9   chr14   21931489       22086067     NR_111966         SALL2
11  chr14   45440886       45803039  NM_001308120       FAM179B
12  chr14   45440886       45803039  NM_001308133         FANCM
14  chr14   45440886       45803039     NM_002013         FKBP3
15  chr14   45440886       45803039     NM_017922        PRPF39
16  chr14   45440886       45803039     NM_018353      MIS18BP1
17  chr14   45440886       45803039     NR_003691      SNORD127
18  chr16    6508195        6651620  NM_001308117        RBFOX1
20  chr20   25349854       25751353  NM_001042472        ABHD12
21  chr20   25349854       25751353  NM_001290261        ZNF337
22  chr20   25349854       25751353  NM_001318226          NINL
25  chr20   25349854       25751353     NM_021067         GINS1
26  chr20   25349854       25751353     NM_152667          NANP
27  chr20   25349854       25751353     NR_026714       FAM182B
29  chr20   25349854       25751353     NR_126465    ZNF337-AS1
32  chr20   25349854       25751353     NR_135006  LOC105372582
33  chr20   25349854       25751353     NR_135512  LOC105379511
34   chr9   67069707       67449644     NR_002817        AQP7P1
35   chr9   67069707       67449644     NR_136300  LOC102724580,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2  186275369      186680465     NM_173651         FSIP2
1   chr2  186275369      186680465     NR_110214  LOC101927196
4   chr2  186275369      186680465     NR_144453     FSIP2-AS1
6   chr4  169200857      169578562  NM_001012967        DDX60L
7   chr4  169200857      169578562  NM_001166108         PALLD
10  chr4  169200857      169578562     NM_017631         DDX60
11  chr8    6998003        7252972  NM_001164457       ZNF705G
12  chr8    6998003        7252972  NM_001256873       USP17L1
13  chr8    6998003        7252972  NM_001256874       USP17L4
14  chr8    6998003        7252972     NR_003668    DEFB109P1B
15  chr8    6998003        7252972     NR_027000     LINC00965
18  chr8    6998003        7252972     NR_027423        FAM66B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18270555       18619397  NM_001004060         NOMO2
1   chr16   18270555       18619397  NM_001282511        NPIPA8
2   chr16   18270555       18619397     NR_003569       ABCC6P1
3   chr16   18270555       18619397     NR_036140     MIR3179-1
4   chr16   18270555       18619397     NR_036142     MIR3180-2
5   chr16   18270555       18619397     NR_036144     MIR3180-3
6   chr16   18270555       18619397     NR_037442     MIR3670-1
7   chr16   18270555       18619397     NR_103772  LOC100288162
8   chr16   18270555       18619397     NR_106971     MIR6511A4
9   chr16   18270555       18619397     NR_107060     MIR6770-2
10   chr2  186515649      186621243     NM_173651         FSIP2
11   chr2  186515649      186621243     NR_110214  LOC101927196
14  chr20    2943529        3338353     NM_000490           AVP
15  chr20    2943529        3338353     NM_000915           OXT
16  chr20    2943529        3338353  NM_001009984     C20orf194
17  chr20    2943529        3338353  NM_001174089       SLC4A11
19  chr20    2943529        3338353  NM_001267584         UBOX5
20  chr20    2943529        3338353  NM_001267623          ITPA
21  chr20    2943529        3338353  NM_001282533         LZTS3
23  chr20    2943529        3338353     NM_002836         PTPRA
24  chr20    2943529        3338353     NM_021826       FASTKD5
25  chr20    2943529        3338353     NM_023935        DDRGK1
26  chr20    2943529        3338353     NM_030811        MRPS26
30  chr20    2943529        3338353     NM_178332         GNRH2
31  chr20    2943529        3338353     NR_038395     UBOX5-AS1
34   chr7   16722326       16830527  NM_001159767          BZW2
35   chr7   16722326       16830527     NM_014399       TSPAN13,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21580019       22299176  NM_001001912         OR4E2
1   chr14   21580019       22299176  NM_001004731        OR5AU1
2   chr14   21580019       22299176  NM_001005465        OR10G3
3   chr14   21580019       22299176  NM_001005466        OR10G2
4   chr14   21580019       22299176  NM_001163380         RAB2B
5   chr14   21580019       22299176  NM_001170629          CHD8
6   chr14   21580019       22299176  NM_001303523          TOX4
7   chr14   21580019       22299176  NM_001317107         OR4E1
8   chr14   21580019       22299176     NM_007192       SUPT16H
9   chr14   21580019       22299176     NM_019852        METTL3
10  chr14   21580019       22299176     NM_020366       RPGRIP1
12  chr14   21580019       22299176     NM_031314        HNRNPC
14  chr14   21580019       22299176     NR_002916        SNORD8
15  chr14   21580019       22299176     NR_003029        SNORD9
16  chr14   21580019       22299176     NR_038970     LINC00641
18  chr14   21580019       22299176     NR_111966         SALL2
20  chr16   21839021       21975356  NM_001310148        NPIPB4
21  chr16   21839021       21975356     NM_003366        UQCRC2
22   chr3   59981069       60082735  NM_001320899          FHIT
24   chr4   71394381       71499010  NM_001286731          AMTN
25   chr4   71394381       71499010     NM_016519          AMBN
26   chr4   71394381       71499010     NM_031889          ENAM
27   chr7   64035778       64145979  NM_001282360        ZNF107
28   chr7   64035778       64145979     NR_033245     LOC641746
29   chr7   64035778       64145979     NR_077227  LOC100128885
31   chr7   64035778       64145979     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   21698981       21828118     NM_007192    SUPT16H
1  chr14   21698981       21828118     NM_020366    RPGRIP1
2  chr14   21698981       21828118     NM_031314     HNRNPC
3  chr16   68539522       68982385  NM_001305204      ZFP90
5  chr16   68539522       68982385  NM_001317184       CDH1
6  chr16   68539522       68982385  NM_001317195       CDH3
7  chr16   68539522       68982385     NM_024562     TANGO6
8  chr16   68539522       68982385     NR_106988  MIR7641-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21820584       22024596  NM_001163380         RAB2B
1   chr14   21820584       22024596  NM_001170629          CHD8
2   chr14   21820584       22024596  NM_001303523          TOX4
3   chr14   21820584       22024596     NM_007192       SUPT16H
4   chr14   21820584       22024596     NM_019852        METTL3
7   chr14   21820584       22024596     NR_002916        SNORD8
8   chr14   21820584       22024596     NR_003029        SNORD9
9   chr14   21820584       22024596     NR_111966         SALL2
11  chr15   20994760       21217416  NM_001277303        POTEB2
12  chr15   20994760       21217416     NM_207355        POTEB3
13  chr15   20994760       21217416     NR_028506         NF1P2
14  chr15   20994760       21217416     NR_036062     MIR3118-2
15  chr15   20994760       21217416     NR_040094     LINC01193
16  chr15   20994760       21217416     NR_049895     MIR5701-2
18  chr15   85697250       86581458  NM_001270546        AKAP13
19  chr15   85697250       86581458  NM_001310153      GOLGA6L3
21  chr15   85697250       86581458     NM_022480        KLHL25
22  chr15   85697250       86581458     NR_031682       MIR1276
23  chr15   85697250       86581458     NR_049748     LOC642423
24  chr15   85697250       86581458     NR_049805      MIR548AP
25  chr15   85697250       86581458     NR_106993       MIR7706
26  chr15   85697250       86581458     NR_120366  LOC101929679
27   chr2  132020646      132149321  NM_001077637        WTH3DI
28   chr2  132020646      132149321  NM_001083538         POTEE
29   chr2  132020646      132149321     NR_030728     LOC440910
30   chr7   18396418       18595227  NM_001204144         HDAC9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63121953       63355152     NR_047029     LINC00448
1   chr14   21735116       21938022  NM_001163380         RAB2B
2   chr14   21735116       21938022  NM_001170629          CHD8
3   chr14   21735116       21938022     NM_007192       SUPT16H
4   chr14   21735116       21938022     NM_020366       RPGRIP1
6   chr14   21735116       21938022     NM_031314        HNRNPC
8   chr14   21735116       21938022     NR_002916        SNORD8
9   chr14   21735116       21938022     NR_003029        SNORD9
10  chr15   77861105       78156920  NM_001301186        LINGO1
20  chr15   77861105       78156920     NR_045123    LINGO1-AS1
21  chr15   77861105       78156920     NR_120361    LINGO1-AS2
22   chr3     374328         824598  NM_001253387          CHL1
24   chr3     374328         824598     NR_110118     LINC01266
25   chr3     374328         824598     NR_110739      CHL1-AS1
26   chr7   64030327       64148699  NM_001282360        ZNF107
27   chr7   64030327       64148699     NR_033245     LOC641746
28   chr7   64030327       64148699     NR_077227  LOC100128885
30   chr7   64030327       64148699     NR_106898       MIR6839
31   chr9   11898255       13134312     NM_000550         TYRP1
32   chr9   11898255       13134312  NM_001261407          MPDZ
34   chr9   11898255       13134312     NM_203403       LURAP1L
35   chr9   11898255       13134312     NR_125775   LURAP1L-AS1
36   chr9   11898255       13134312     NR_132976      SNORD137,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21881522       23133354  NM_001001912         OR4E2
1   chr14   21881522       23133354  NM_001005465        OR10G3
2   chr14   21881522       23133354  NM_001005466        OR10G2
3   chr14   21881522       23133354  NM_001163380         RAB2B
4   chr14   21881522       23133354  NM_001170629          CHD8
5   chr14   21881522       23133354  NM_001303523          TOX4
6   chr14   21881522       23133354  NM_001317107         OR4E1
7   chr14   21881522       23133354     NM_001344          DAD1
8   chr14   21881522       23133354     NM_019852        METTL3
10  chr14   21881522       23133354     NM_022060         ABHD4
12  chr14   21881522       23133354     NR_111966         SALL2
14  chr21   40113445       40263483  NM_001256295          ETS2
16  chr21   40113445       40263483     NR_027065     LINC00114
19  chr21   40113445       40263483     NR_109926  LOC101928398
20  chr21   40113445       40263483     NR_120405     LOC400867,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21797294       21897613  NM_001170629          CHD8
1   chr14   21797294       21897613     NM_007192       SUPT16H
2   chr14   21797294       21897613     NM_020366       RPGRIP1
4   chr14   21797294       21897613     NR_002916        SNORD8
5   chr14   21797294       21897613     NR_003029        SNORD9
6   chr21   22402469       22605760     NM_004540         NCAM2
7    chr4    8979810        9569215  NM_001040448       DEFB131
8    chr4    8979810        9569215  NM_001242326      USP17L25
16   chr4    8979810        9569215  NM_001256852      USP17L10
17   chr4    8979810        9569215  NM_001256853      USP17L12
19   chr4    8979810        9569215  NM_001256854      USP17L11
22   chr4    8979810        9569215  NM_001256855      USP17L13
23   chr4    8979810        9569215  NM_001256857      USP17L17
24   chr4    8979810        9569215  NM_001256860      USP17L19
25   chr4    8979810        9569215  NM_001256861      USP17L20
26   chr4    8979810        9569215  NM_001256894      USP17L15
27   chr4    8979810        9569215     NR_027279      USP17L6P
28   chr4    8979810        9569215     NR_031688      MIR548I2
29   chr4    8979810        9569215     NR_046416      USP17L9P
30   chr7    5582107        5859014     NM_003088         FSCN1
31   chr7    5582107        5859014     NM_207116        RNF216
32   chr7    5582107        5859014     NR_046834    RNF216-IT1
33   chr7    5582107        5859014     NR_106934       MIR6874
34   chr7    6923931        7123184     NR_034022  LOC100131257
35   chr7    6923931        7123184     NR_037454       MIR3683
36   chr7   14877037       15239190     NM_004080          DGKB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21845166       22066881  NM_001005465        OR10G3
1   chr14   21845166       22066881  NM_001163380         RAB2B
2   chr14   21845166       22066881  NM_001170629          CHD8
3   chr14   21845166       22066881  NM_001303523          TOX4
4   chr14   21845166       22066881     NM_007192       SUPT16H
5   chr14   21845166       22066881     NM_019852        METTL3
8   chr14   21845166       22066881     NR_002916        SNORD8
9   chr14   21845166       22066881     NR_003029        SNORD9
10  chr14   21845166       22066881     NR_111966         SALL2
12   chr2  134054769      134294300     NM_207363        NCKAP5
13   chr7  143032952      143248840     NM_000083         CLCN1
14   chr7  143032952      143248840  NM_001278297       FAM131B
15   chr7  143032952      143248840  NM_001322263  LOC100507507
16   chr7  143032952      143248840     NM_003461           ZYX
17   chr7  143032952      143248840     NM_005232         EPHA1
19   chr7  143032952      143248840     NM_176883       TAS2R41
20   chr7  143032952      143248840     NM_177437       TAS2R60
21   chr7  143032952      143248840     NR_033897     EPHA1-AS1
22   chr7  143032952      143248840     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18315693       18540611  NM_001004060         NOMO2
1   chr16   18315693       18540611  NM_001282511        NPIPA8
2   chr16   18315693       18540611     NR_036140     MIR3179-1
3   chr16   18315693       18540611     NR_036142     MIR3180-2
4   chr16   18315693       18540611     NR_036144     MIR3180-3
5   chr16   18315693       18540611     NR_037442     MIR3670-1
6   chr16   18315693       18540611     NR_103772  LOC100288162
7   chr16   18315693       18540611     NR_106971     MIR6511A4
8   chr16   18315693       18540611     NR_107060     MIR6770-2
9   chr22   17237872       17409637     NM_175878          XKR3
10  chr22   17237872       17409637     NR_003607       HSFY1P1
11   chr4    8589833        8803398  NM_001014447           CPZ
12   chr4    8589833        8803398     NM_080819         GPR78
14   chr7   83072065       83569921  NM_001178129        SEMA3E
16   chr9   30317907       30430735     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18264430       18557517  NM_001004060         NOMO2
1   chr16   18264430       18557517  NM_001282511        NPIPA8
2   chr16   18264430       18557517     NR_036140     MIR3179-1
3   chr16   18264430       18557517     NR_036142     MIR3180-2
4   chr16   18264430       18557517     NR_036144     MIR3180-3
5   chr16   18264430       18557517     NR_037442     MIR3670-1
6   chr16   18264430       18557517     NR_103772  LOC100288162
7   chr16   18264430       18557517     NR_106971     MIR6511A4
8   chr16   18264430       18557517     NR_107060     MIR6770-2
9   chr20   14745759       14873650     NM_080676       MACROD2
10  chr20   14745759       14873650     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244997669      246319024  NM_001143943        EFCAB2
1    chr1  244997669      246319024  NM_001167740         SMYD3
3    chr1  244997669      246319024  NM_001312871         COX20
5    chr1  244997669      246319024     NM_004501        HNRNPU
6    chr1  244997669      246319024     NM_018012        KIF26B
10   chr1  244997669      246319024     NR_111907  LOC101928068
11   chr1  244997669      246319024     NR_132782      SNORA100
12  chr14   21804828       22055564  NM_001005465        OR10G3
13  chr14   21804828       22055564  NM_001163380         RAB2B
14  chr14   21804828       22055564  NM_001170629          CHD8
15  chr14   21804828       22055564  NM_001303523          TOX4
16  chr14   21804828       22055564     NM_007192       SUPT16H
17  chr14   21804828       22055564     NM_019852        METTL3
18  chr14   21804828       22055564     NM_020366       RPGRIP1
21  chr14   21804828       22055564     NR_002916        SNORD8
22  chr14   21804828       22055564     NR_003029        SNORD9
23  chr14   21804828       22055564     NR_111966         SALL2
25   chr4    9133386        9234142  NM_001256852      USP17L10
26   chr4    9133386        9234142  NM_001256853      USP17L12
27   chr4    9133386        9234142  NM_001256854      USP17L11
28   chr4    9133386        9234142  NM_001256855      USP17L13,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   14824503       15071460  NM_001277323        NPIPA3
1   chr16   14824503       15071460  NM_001277324        NPIPA2
2   chr16   14824503       15071460  NM_001285445        PDXDC1
8   chr16   14824503       15071460     NM_006985        NPIPA1
9   chr16   14824503       15071460     NM_014287         NOMO1
10  chr16   14824503       15071460     NR_023387       ABCC6P2
11  chr16   14824503       15071460     NR_036140     MIR3179-1
12  chr16   14824503       15071460     NR_036141     MIR3180-1
13  chr16   14824503       15071460     NR_036142     MIR3180-2
14  chr16   14824503       15071460     NR_103772  LOC100288162
15  chr16   14824503       15071460     NR_106970     MIR6511A3
16  chr16   14824503       15071460     NR_107060     MIR6770-2
17  chr16   14824503       15071460     NR_128713     MIR3670-4
18  chr20   40990749       41305603     NM_133170         PTPRT,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   12844676       13229665  NM_001009611     PRAMEF4
1    chr1   12844676       13229665  NM_001010889     PRAMEF6
2    chr1   12844676       13229665  NM_001010890     PRAMEF9
3    chr1   12844676       13229665  NM_001012276     PRAMEF8
4    chr1   12844676       13229665  NM_001013407     PRAMEF5
5    chr1   12844676       13229665  NM_001013631    HNRNPCL1
6    chr1   12844676       13229665  NM_001099850    PRAMEF18
7    chr1   12844676       13229665  NM_001100631    PRAMEF22
8    chr1   12844676       13229665  NM_001136561    HNRNPCL2
9    chr1   12844676       13229665  NM_001146181    HNRNPCL3
10   chr1   12844676       13229665  NM_001146344    PRAMEF11
11   chr1   12844676       13229665  NM_001294139     PRAMEF1
12   chr1   12844676       13229665  NM_001302551    HNRNPCL4
13   chr1   12844676       13229665  NM_001306072    PRAMEF26
14   chr1   12844676       13229665  NM_001310134    PRAMEF25
16   chr1   12844676       13229665     NM_023014     PRAMEF2
17   chr1   12844676       13229665     NR_111945   PRAMEF36P
19  chr11   59386417       60021846  NM_001005324      OR10V1
20  chr11   59386417       60021846  NM_001031666       MS4A3
21  chr11   59386417       60021846     NM_001062        TCN1
22  chr11   59386417       60021846  NM_001178040        STX3
23  chr11   59386417       60021846  NM_001247999      MS4A6A
24  chr11   59386417       60021846  NM_001256916       MS4A2
26  chr11   59386417       60021846     NM_005142         GIF
27  chr11   59386417       60021846     NM_017840      MRPL16
29  chr11   59386417       60021846     NM_152716       PATL1
32  chr11   59386417       60021846     NM_173801       OOSP2
33  chr11   59386417       60021846     NR_045005     OR10V2P
34  chr11   59386417       60021846     NR_106758     MIR6503
35  chr11   59386417       60021846     NR_130719       OOSP1
36  chr14   21813961       22048646  NM_001005465      OR10G3
37  chr14   21813961       22048646  NM_001163380       RAB2B
38  chr14   21813961       22048646  NM_001170629        CHD8
39  chr14   21813961       22048646  NM_001303523        TOX4
40  chr14   21813961       22048646     NM_007192     SUPT16H
41  chr14   21813961       22048646     NM_019852      METTL3
42  chr14   21813961       22048646     NM_020366     RPGRIP1
45  chr14   21813961       22048646     NR_002916      SNORD8
46  chr14   21813961       22048646     NR_003029      SNORD9
47  chr14   21813961       22048646     NR_111966       SALL2
49  chr15   30318142       30444187  NM_001282472     GOLGA8J
50  chr15   30318142       30444187     NR_026859      ULK4P3
51  chr15   30318142       30444187     NR_033933     GOLGA8T
52  chr15   82832200       82987902  NM_001164465   GOLGA6L10
53  chr15   82832200       82987902  NM_001291420    GOLGA6L9
55  chr15   82832200       82987902     NR_026811   GOLGA2P10
56  chr15   82832200       82987902     NR_045529   ADAMTS7P1
57  chr15   82832200       82987902     NR_102747   LOC727751
58  chr15   82832200       82987902     NR_111962  GOLGA6L17P
59  chr16    8611559        8737328  NM_001146336     TMEM114
61  chr16    8611559        8737328     NM_024109     METTL22
62   chr9   28212253       28593059  NM_001258282      LINGO2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1  143719057      144682247  NM_001123068      PPIAL4G
1   chr1  143719057      144682247  NM_001135789      PPIAL4C
2   chr1  143719057      144682247  NM_001277444        NBPF9
3   chr1  143719057      144682247  NM_001278267       NBPF20
4   chr1  143719057      144682247  NM_001287385       FAM72C
5   chr1  143719057      144682247  NM_001345942       FAM72D
9   chr1  143719057      144682247     NR_003242       PFN1P2
10  chr1  143719057      144682247     NR_024511    LINC00623
12  chr1  143719057      144682247     NR_102405        NBPF8
13  chr1  143719057      144682247     NR_104014    LINC01138
14  chr1  143719057      144682247     NR_111953    LINC00869
16  chr2  131926916      133550872  NM_001077427        LYPD1
17  chr2  131926916      133550872  NM_001077637       WTH3DI
18  chr2  131926916      133550872  NM_001083538        POTEE
19  chr2  131926916      133550872  NM_001085365        MZT2A
20  chr2  131926916      133550872  NM_001258304      CCDC74A
21  chr2  131926916      133550872  NM_001304449       ZNF806
23  chr2  131926916      133550872     NM_001508        GPR39
24  chr2  131926916      133550872     NM_013310     C2orf27A
25  chr2  131926916      133550872     NM_080386       TUBA3D
26  chr2  131926916      133550872     NM_207363       NCKAP5
27  chr2  131926916      133550872     NM_214461     C2orf27B
28  chr2  131926916      133550872     NR_002826      NOC2LP2
29  chr2  131926916      133550872     NR_026922    LOC150776
30  chr2  131926916      133550872     NR_027019    ANKRD30BL
32  chr2  131926916      133550872     NR_030728    LOC440910
33  chr2  131926916      133550872     NR_031608      MIR663B
34  chr2  131926916      133550872     NR_033885       POTEKP
35  chr2  131926916      133550872     NR_036499    LINC01120
36  chr2  131926916      133550872     NR_039945      MIR4784
37  chr2  131926916      133550872     NR_108087    LINC01087
38  chr2  131926916      133550872     NR_135203      FAM201B
39  chr3   21279529       21631644     NM_024697      ZNF385D
40  chr3   21279529       21631644     NR_002311      VENTXP7
41  chr3   21279529       21631644     NR_046731  ZNF385D-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16285200       16450563  NM_001004067         NOMO3
1   chr16   16285200       16450563  NM_001079528         ABCC6
3   chr16   16285200       16450563     NR_036140     MIR3179-1
4   chr16   16285200       16450563     NR_036141     MIR3180-1
5   chr16   16285200       16450563     NR_036142     MIR3180-2
6   chr16   16285200       16450563     NR_036447        PKD1P1
7   chr16   16285200       16450563     NR_103772  LOC100288162
8   chr16   16285200       16450563     NR_106766     MIR6511A1
9   chr16   16285200       16450563     NR_107060     MIR6770-2
10  chr16   16285200       16450563     NR_128713     MIR3670-4
11   chr3  162892634      163022204     NR_033945     LINC01192
12   chr9   41524584       41625826     NR_003528       ZNF658B
13   chr9   66956593       67057258     NR_046175     LOC286297
14   chr9   66956593       67057258     NR_135597  LOC101928195
15   chr9   66956593       67057258     NR_136299  LOC101929583,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145261860      145428766  NM_001277444         NBPF9
1    chr1  145261860      145428766  NM_001278267        NBPF20
2    chr1  145261860      145428766  NM_001302371        NBPF10
3    chr1  145261860      145428766     NM_145277          HFE2
4    chr1  145261860      145428766     NM_203458      NOTCH2NL
5    chr1  145261860      145428766     NR_104217       NBPF25P
6    chr1  145261860      145428766     NR_125967  LOC101928979
7   chr11   83479377       83709039  NM_001142699          DLG2
11  chr15   28561881       28670964     NM_004667         HERC2
12  chr15   28561881       28670964     NR_033351       GOLGA8F
13  chr15   28561881       28670964     NR_033353       GOLGA8G
14  chr22   17246567       17530060  NM_001037814          GAB4
15  chr22   17246567       17530060     NM_175878          XKR3
16  chr22   17246567       17530060     NR_003607       HSFY1P1
17  chr22   17246567       17530060     NR_015352         CECR7
18   chr7   64067694       64504191  NM_001007253        ERV3-1
19   chr7   64067694       64504191  NM_001160183        ZNF138
20   chr7   64067694       64504191  NM_001282360        ZNF107
21   chr7   64067694       64504191     NM_015852        ZNF117
22   chr7   64067694       64504191     NM_021148        ZNF273
23   chr7   64067694       64504191     NR_033416        CCT6P3
25   chr7   64067694       64504191     NR_077227  LOC100128885
27   chr7   64067694       64504191     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49601041       49959304  NM_001323575         AGBL4
1    chr1   49601041       49959304     NR_046839     AGBL4-IT1
2    chr1   49601041       49959304     NR_125988  LOC101929721
3   chr10   68351903       68493947  NM_001127384        CTNNA3
5   chr15   28791387       29072147  NM_001282468       GOLGA8M
6   chr15   28791387       29072147     NR_026589       WHAMMP2
7   chr15   28791387       29072147     NR_036443       HERC2P9
8   chr15   28791387       29072147     NR_036475  LOC100289656
9   chr15   28791387       29072147     NR_037599     PDCD6IPP2
10  chr15   59968108       60126072  NM_001320674         BNIP2
12  chr20   14697536       14823632     NM_080676       MACROD2
13   chr6  162869281      163110350     NM_013988         PARK2
14   chr9   67200477       67528108     NR_002817        AQP7P1
15   chr9   67200477       67528108     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21830727       21987068  NM_001163380         RAB2B
1   chr14   21830727       21987068  NM_001170629          CHD8
2   chr14   21830727       21987068  NM_001303523          TOX4
3   chr14   21830727       21987068     NM_007192       SUPT16H
4   chr14   21830727       21987068     NM_019852        METTL3
7   chr14   21830727       21987068     NR_002916        SNORD8
8   chr14   21830727       21987068     NR_003029        SNORD9
9    chr2  133766371      134001338     NM_207363        NCKAP5
10   chr8   15309098       15710597     NM_006765         TUSC3
11   chr9   41922229       42034291     NR_003670        FGF7P3
12   chr9   41922229       42034291     NR_015363         GLIDR
15   chr9   41922229       42034291     NR_126048  LOC102724238
16   chr9   41922229       42034291     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10    6715087        6872405     NR_038291  LINC00707
1   chr10    6715087        6872405     NR_108074  LINC00706
2   chr10    6715087        6872405     NR_138480      LINP1
3   chr14   21822745       22444264  NM_001001912      OR4E2
4   chr14   21822745       22444264  NM_001005465     OR10G3
5   chr14   21822745       22444264  NM_001005466     OR10G2
6   chr14   21822745       22444264  NM_001163380      RAB2B
7   chr14   21822745       22444264  NM_001170629       CHD8
8   chr14   21822745       22444264  NM_001303523       TOX4
9   chr14   21822745       22444264  NM_001317107      OR4E1
10  chr14   21822745       22444264     NM_007192    SUPT16H
11  chr14   21822745       22444264     NM_019852     METTL3
14  chr14   21822745       22444264     NR_002916     SNORD8
15  chr14   21822745       22444264     NR_003029     SNORD9
16  chr14   21822745       22444264     NR_111966      SALL2
18   chr3    1166689        1279572  NM_001289081      CNTN6
19   chr9   20821305       20938165     NM_017794      FOCAD
20   chr9   28480404       28582985  NM_001258282     LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   76001577       76126587  NM_001130058       SLC44A5
4    chr1  143111939      143531058     NR_110761  LOC102723769
5   chr14   19884478       20004872  NM_001145442         POTEM
6   chr14   19884478       20004872     NR_073459       BMS1P18
7   chr14   19884478       20004872     NR_110526       DUXAP10
8   chr14   19884478       20004872     NR_122111     LINC01296
10  chr14   19884478       20004872     NR_133911       BMS1P22
11  chr15   28702846       28989014  NM_001282468       GOLGA8M
12  chr15   28702846       28989014     NR_026589       WHAMMP2
13  chr15   28702846       28989014     NR_033351       GOLGA8F
14  chr15   28702846       28989014     NR_033353       GOLGA8G
15  chr15   28702846       28989014     NR_036443       HERC2P9
16  chr15   28702846       28989014     NR_039734     MIR4509-3
17   chr2  123802801      125333407     NM_130773       CNTNAP5
18  chr20   14687830       14828215     NM_080676       MACROD2
19   chr6    1825206        1983684  NM_001253846          GMDS
21   chr6  162609970      162725181     NM_013988         PARK2
22   chr7  110759213      110997778  NM_001099658         LRRN3
23   chr7  110759213      110997778  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  224754783      224933117  NM_001322302         CNIH3
4   chr14   21772306       22029751  NM_001163380         RAB2B
5   chr14   21772306       22029751  NM_001170629          CHD8
6   chr14   21772306       22029751  NM_001303523          TOX4
7   chr14   21772306       22029751     NM_007192       SUPT16H
8   chr14   21772306       22029751     NM_019852        METTL3
9   chr14   21772306       22029751     NM_020366       RPGRIP1
12  chr14   21772306       22029751     NR_002916        SNORD8
13  chr14   21772306       22029751     NR_003029        SNORD9
14  chr14   21772306       22029751     NR_111966         SALL2
16  chr16    6676759        6782932  NM_001308117        RBFOX1
18   chr6   97450933       97564335  NM_001286251        KLHL32
22   chr6   97450933       97564335     NR_031679      MIR548H3
23   chr9   41831145       42067510     NR_003670        FGF7P3
24   chr9   41831145       42067510     NR_015363         GLIDR
27   chr9   41831145       42067510     NR_126048  LOC102724238
28   chr9   41831145       42067510     NR_126049     LOC554249
29   chr9   41929008       42226241     NR_003670        FGF7P3
30   chr9   41929008       42226241     NR_015363         GLIDR
33   chr9   41929008       42226241     NR_126048  LOC102724238
34   chr9   41929008       42226241     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21840897       21953252  NM_001163380     RAB2B
1  chr14   21840897       21953252  NM_001170629      CHD8
2  chr14   21840897       21953252  NM_001303523      TOX4
3  chr14   21840897       21953252     NM_007192   SUPT16H
6  chr14   21840897       21953252     NR_002916    SNORD8
7  chr14   21840897       21953252     NR_003029    SNORD9
8  chr15   54585584       54699036  NM_001080534    UNC13C,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21609404       21763982  NM_001004731       OR5AU1
1   chr14   21609404       21763982     NM_020366      RPGRIP1
2   chr14   21609404       21763982     NM_031314       HNRNPC
3   chr14   21609404       21763982     NR_038970    LINC00641
5   chr15   21120072       21417305     NR_028506        NF1P2
6   chr15   21120072       21417305     NR_040094    LINC01193
7   chr15   21120072       21417305     NR_049895    MIR5701-2
8   chr20   14776637       14886500     NM_080676      MACROD2
9   chr20   14776637       14886500     NR_037841  MACROD2-AS1
11   chr5   17747600       17852548     NR_134286    LOC646241
13   chr7  110676778      110883752  NM_001099658        LRRN3
14   chr7  110676778      110883752  NM_001244606       IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244961382      245587509  NM_001143943        EFCAB2
2    chr1  244961382      245587509  NM_001312871         COX20
4    chr1  244961382      245587509     NM_004501        HNRNPU
5    chr1  244961382      245587509     NM_018012        KIF26B
8    chr1  244961382      245587509     NR_111907  LOC101928068
9    chr1  244961382      245587509     NR_132782      SNORA100
10  chr11    6734627        6888723  NM_001004489        OR2AG1
11  chr11    6734627        6888723  NM_001004490        OR2AG2
12  chr11    6734627        6888723     NM_003696         OR6A2
13  chr11    6734627        6888723     NM_178168        OR10A5
14  chr11    6734627        6888723     NR_003945        GVINP1
15  chr16   16387963       16552012  NM_001004067         NOMO3
16  chr16   16387963       16552012  NM_001282511        NPIPA8
17  chr16   16387963       16552012     NR_036140     MIR3179-1
18  chr16   16387963       16552012     NR_036141     MIR3180-1
19  chr16   16387963       16552012     NR_036142     MIR3180-2
20  chr16   16387963       16552012     NR_036447        PKD1P1
21  chr16   16387963       16552012     NR_103772  LOC100288162
22  chr16   16387963       16552012     NR_106766     MIR6511A1
23  chr16   16387963       16552012     NR_106971     MIR6511A4
24  chr16   16387963       16552012     NR_107060     MIR6770-2
25  chr16   16387963       16552012     NR_128713     MIR3670-4
26  chr19   21641504       21773585  NM_001001415        ZNF429
27  chr19   21641504       21773585     NR_037194     LINC00664
28   chr3   21271640       23933845  NM_001202476        UBE2E1
29   chr3   21271640       23933845     NM_020345       NKIRAS1
30   chr3   21271640       23933845     NM_024697       ZNF385D
31   chr3   21271640       23933845     NM_152653        UBE2E2
33   chr3   21271640       23933845     NR_002311       VENTXP7
34   chr3   21271640       23933845     NR_039621      MIR548AC
35   chr3   21271640       23933845     NR_046652    UBE2E1-AS1
36   chr3   21271640       23933845     NR_046731   ZNF385D-AS1
37   chr3   21271640       23933845     NR_046876   ZNF385D-AS2
38   chr3   21271640       23933845     NR_136176    UBE2E2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   82180957       82324345  NM_001297704     ADGRL2
2   chr14   21792991       21924808  NM_001170629       CHD8
3   chr14   21792991       21924808     NM_007192    SUPT16H
4   chr14   21792991       21924808     NM_020366    RPGRIP1
6   chr14   21792991       21924808     NR_002916     SNORD8
7   chr14   21792991       21924808     NR_003029     SNORD9
8   chr15   28529732       28923678     NM_004667      HERC2
9   chr15   28529732       28923678     NR_033351    GOLGA8F
11  chr15   28529732       28923678     NR_033353    GOLGA8G
13  chr15   28529732       28923678     NR_036443    HERC2P9
14  chr15   28529732       28923678     NR_039734  MIR4509-3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   38183349       38343719  NM_001310135      TTC6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  112457261      112630430  NM_001270945     LOC643355
1    chr1  112457261      112630430     NM_172198         KCND3
2    chr1  237485252      237701248     NM_001035          RYR2
3    chr1  237485252      237701248     NR_039626       MIR4428
4    chr2  186022578      187028775     NM_173651         FSIP2
5    chr2  186022578      187028775     NR_110214  LOC101927196
8    chr2  186022578      187028775     NR_110218     LINC01473
9    chr2  186022578      187028775     NR_136319  LOC105373782
10   chr2  186022578      187028775     NR_144453     FSIP2-AS1
12  chr22   20088822       20230124  NM_001190326         DGCR8
13  chr22   20088822       20230124  NM_001243537       CCDC188
14  chr22   20088822       20230124  NM_001278639        RANBP1
17  chr22   20088822       20230124     NM_013373        ZDHHC8
18  chr22   20088822       20230124     NM_022727        TRMT2A
19  chr22   20088822       20230124     NM_023004         RTN4R
20  chr22   20088822       20230124     NR_026919     LINC00896
21  chr22   20088822       20230124     NR_038460     LOC284865
22  chr22   20088822       20230124     NR_106874       MIR6816
23   chr3  196794811      196966233  NM_001204386          DLG1
26   chr4   69318466       69562884     NM_001076       UGT2B15
27   chr4   69318466       69562884     NM_001077       UGT2B17
28   chr4   69318466       69562884     NM_014058     TMPRSS11E
29   chr6  119704036      121374682     NR_036098       MIR3144
30   chr6  119704036      121374682     NR_046100     LOC285762
31   chr6  119704036      121374682     NR_134600  LOC105377975
32   chr9  132428202      132631493     NM_000113         TOR1A
33   chr9  132428202      132631493     NM_004878         PTGES
34   chr9  132428202      132631493     NM_006676         USP20
35   chr9  132428202      132631493     NM_014506         TOR1B
36   chr9  132428202      132631493     NM_016307         PRRX2
37   chr9  132428202      132631493     NM_016520       C9orf78
38   chr9  132428202      132631493     NR_132102     PRRX2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   10478048       10589560  NM_001256160       ATF7IP2
2   chr16   16286096       16794758  NM_001004067         NOMO3
3   chr16   16286096       16794758  NM_001079528         ABCC6
5   chr16   16286096       16794758  NM_001282511        NPIPA8
6   chr16   16286096       16794758     NR_036140     MIR3179-1
7   chr16   16286096       16794758     NR_036141     MIR3180-1
8   chr16   16286096       16794758     NR_036142     MIR3180-2
9   chr16   16286096       16794758     NR_036447        PKD1P1
10  chr16   16286096       16794758     NR_103772  LOC100288162
11  chr16   16286096       16794758     NR_106766     MIR6511A1
12  chr16   16286096       16794758     NR_106971     MIR6511A4
13  chr16   16286096       16794758     NR_107060     MIR6770-2
14  chr16   16286096       16794758     NR_128713     MIR3670-4
15   chr2   51145279       51502761  NM_001330079         NRXN1
18   chr2   51145279       51502761     NR_135237     LOC730100
19   chr3   72666194       73114165  NM_001080393        GXYLT2
20   chr3   72666194       73114165  NM_001318026        PPP4R2
23   chr3   72666194       73114165     NM_018029         EBLN2
24   chr3   72666194       73114165     NM_018130          SHQ1
25   chr3   72666194       73114165     NR_135531  LOC105377162
26   chr7    6758811        7429437  NM_001037763       COL28A1
27   chr7    6758811        7429437  NM_001099697      RSPH10B2
28   chr7    6758811        7429437     NM_020156       C1GALT1
29   chr7    6758811        7429437     NM_198097         CCZ1B
30   chr7    6758811        7429437     NR_002217        PMS2CL
31   chr7    6758811        7429437     NR_034022  LOC100131257
32   chr7    6758811        7429437     NR_037454       MIR3683
33   chr7    6758811        7429437     NR_108073  LOC101927354,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244995268      245431765  NM_001143943        EFCAB2
2    chr1  244995268      245431765  NM_001312871         COX20
4    chr1  244995268      245431765     NM_004501        HNRNPU
5    chr1  244995268      245431765     NM_018012        KIF26B
8    chr1  244995268      245431765     NR_111907  LOC101928068
9    chr1  244995268      245431765     NR_132782      SNORA100
10  chr18   40192225       40292794     NR_046174     LINC00907
11  chr22   17189239       17476216  NM_001037814          GAB4
12  chr22   17189239       17476216     NM_175878          XKR3
13  chr22   17189239       17476216     NR_003607       HSFY1P1
14  chr22   17189239       17476216     NR_134584  LOC101929350
15   chr4   91116791       91499581  NM_001145065        CCSER1
17   chr7  125008663      125620736     NR_110188  LOC101928283,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr2  185205662      185343306     NR_039638  MIR548AE1
1  chr22   17258908       17523663  NM_001037814       GAB4
2  chr22   17258908       17523663     NM_175878       XKR3
3  chr22   17258908       17523663     NR_003607    HSFY1P1
4  chr22   17258908       17523663     NR_015352      CECR7
5   chr7   81960397       82251302     NM_000722   CACNA2D1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17258565       17662229  NM_001037814          GAB4
1   chr22   17258565       17662229  NM_001163079         CECR6
2   chr22   17258565       17662229  NM_001282227         CECR1
4   chr22   17258565       17662229  NM_001289905        IL17RA
5   chr22   17258565       17662229     NM_017829         CECR5
8   chr22   17258565       17662229     NM_175878          XKR3
10  chr22   17258565       17662229     NR_003607       HSFY1P1
11  chr22   17258565       17662229     NR_015352         CECR7
12  chr22   17258565       17662229     NR_024482     CECR5-AS1
13  chr22   17258565       17662229     NR_103793  LOC100996342
14   chr4   69237968       69340028     NM_014058     TMPRSS11E
15   chr7   80201860       80321571     NM_000072          CD36,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   14907831       15029943     NM_015209        KAZN
2   chr14   21928518       22303859  NM_001001912       OR4E2
3   chr14   21928518       22303859  NM_001005465      OR10G3
4   chr14   21928518       22303859  NM_001005466      OR10G2
5   chr14   21928518       22303859  NM_001163380       RAB2B
6   chr14   21928518       22303859  NM_001303523        TOX4
7   chr14   21928518       22303859  NM_001317107       OR4E1
8   chr14   21928518       22303859     NM_019852      METTL3
10  chr14   21928518       22303859     NR_111966       SALL2
12   chr7    2652320        2808709  NM_001282440       GNA12
14   chr7    2652320        2808709  NM_001284355        AMZ1
15   chr7    2652320        2808709  NM_001287501        IQCE
18   chr7    2652320        2808709     NM_025250       TTYH3
20   chr8    7078115        7205341  NM_001256873     USP17L1
21   chr8    7078115        7205341  NM_001256874     USP17L4
22   chr8    7078115        7205341     NR_003668  DEFB109P1B
23   chr8    7078115        7205341     NR_027000   LINC00965
26   chr8    7078115        7205341     NR_027423      FAM66B
27   chr9   39002262       39122642     NM_033655     CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245031718      245168508  NM_001143943        EFCAB2
3    chr1  245031718      245168508     NR_111907  LOC101928068
4   chr11    4160746        4470594  NM_001005161        OR52B4
5   chr11    4160746        4470594  NM_001005172        OR52K2
6   chr11    4160746        4470594     NM_003141        TRIM21
7   chr11    4160746        4470594     NR_047550  LOC100506082
8   chr11    4260202        4391128  NM_001005161        OR52B4
9   chr15   28707400       28848785     NR_033351       GOLGA8F
10  chr15   28707400       28848785     NR_033353       GOLGA8G
11  chr15   28707400       28848785     NR_039734     MIR4509-3
12  chr22   19028445       19356076  NM_001184781         DGCR2
13  chr22   19028445       19356076  NM_001256534       SLC25A1
14  chr22   19028445       19356076     NM_001835        CLTCL1
15  chr22   19028445       19356076     NM_003325          HIRA
16  chr22   19028445       19356076     NM_005315          GSC2
18  chr22   19028445       19356076     NM_022719        DGCR14
19  chr22   19028445       19356076     NM_053006         TSSK2
20  chr22   19028445       19356076     NR_024157        DGCR11
21  chr22   19028445       19356076     NR_103767     LINC01311
22   chr4   94177083       94330349     NM_001510         GRID2
23   chr5   66236834       67696285  NM_001164664         MAST4
24   chr5   66236834       67696285  NM_001242466        PIK3R1
28   chr5   66236834       67696285     NM_005582         CD180
33   chr5   66236834       67696285     NR_105003  LOC102467655
34   chr5   66236834       67696285     NR_111908     MAST4-AS1
35   chr5   66236834       67696285     NR_130779  LOC101928858
36   chr7   75722587       75878526  NM_001110199         SRRM3
37   chr7   75722587       75878526     NR_135079       GTF2IP7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21858773       21972496  NM_001163380         RAB2B
1   chr14   21858773       21972496  NM_001170629          CHD8
2   chr14   21858773       21972496  NM_001303523          TOX4
3   chr14   21858773       21972496     NM_019852        METTL3
6   chr14   21858773       21972496     NR_002916        SNORD8
7   chr14   21858773       21972496     NR_003029        SNORD9
8   chr15   28255756       29414197     NM_000275          OCA2
9   chr15   28255756       29414197  NM_001130414         APBA2
10  chr15   28255756       29414197  NM_001282468       GOLGA8M
12  chr15   28255756       29414197     NM_004667         HERC2
13  chr15   28255756       29414197     NM_015307      FAM189A1
14  chr15   28255756       29414197     NR_026589       WHAMMP2
15  chr15   28255756       29414197     NR_033351       GOLGA8F
17  chr15   28255756       29414197     NR_033353       GOLGA8G
19  chr15   28255756       29414197     NR_036443       HERC2P9
20  chr15   28255756       29414197     NR_036475  LOC100289656
21  chr15   28255756       29414197     NR_037599     PDCD6IPP2
22  chr15   28255756       29414197     NR_039734     MIR4509-3
24  chr15   28255756       29414197     NR_047567     GOLGA6L7P
25  chr15   87255018       87852425     NM_152336         AGBL1
26  chr15   87255018       87852425     NR_135682  LOC105370954
27  chr15   87255018       87852425     NR_135683  LOC102724452,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   83677386       84144877  NM_001142699       DLG2
4   chr14   21718959       21885865  NM_001170629       CHD8
5   chr14   21718959       21885865     NM_007192    SUPT16H
6   chr14   21718959       21885865     NM_020366    RPGRIP1
8   chr14   21718959       21885865     NM_031314     HNRNPC
9   chr14   21718959       21885865     NR_002916     SNORD8
10  chr14   21718959       21885865     NR_003029     SNORD9
11  chr17   78121526       78249192     NM_000199       SGSH
12  chr17   78121526       78249192  NM_001166349   SLC26A11
13  chr17   78121526       78249192  NM_001256071     RNF213
14  chr17   78121526       78249192  NM_001257970     CARD14
19   chr3  162858697      162991856     NR_033945  LINC01192,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   62427544       62529220     NM_178539       FAM19A2
1   chr14   21925468       22320916  NM_001001912         OR4E2
2   chr14   21925468       22320916  NM_001005465        OR10G3
3   chr14   21925468       22320916  NM_001005466        OR10G2
4   chr14   21925468       22320916  NM_001163380         RAB2B
5   chr14   21925468       22320916  NM_001303523          TOX4
6   chr14   21925468       22320916  NM_001317107         OR4E1
7   chr14   21925468       22320916     NM_019852        METTL3
9   chr14   21925468       22320916     NR_111966         SALL2
11  chr18   24786805       25058000     NR_134589  LOC105372038
12  chr22   15684448       16397050  NM_001136213         POTEH
13  chr22   15684448       16397050     NR_046571     POTEH-AS1
14  chr22   15684448       16397050     NR_073459       BMS1P18
15  chr22   15684448       16397050     NR_122113        DUXAP8
16  chr22   15684448       16397050     NR_132385     LINC01297
17  chr22   15684448       16397050     NR_133911       BMS1P22
18   chr3  148049439      148472448     NM_009585         AGTR1
20   chr3  197160673      197451653  NM_001145642         RUBCN
22   chr3  197160673      197451653     NM_203314          BDH1
24   chr3  197160673      197451653     NR_003266     LOC220729
25   chr3  197160673      197451653     NR_030627        MIR922
26   chr7    8677411        9051114     NM_152745         NXPH1
27   chr8    7877652        8235915  NM_001080826         PRAG1
28   chr8    7877652        8235915     NR_024361      FAM86B3P
31   chr8    7877652        8235915     NR_031689      MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   25057057       25913692  NM_001009909         LUZP2
1   chr13   63122395       64412058     NR_002171      OR7E156P
2   chr13   63122395       64412058     NR_047011     LINC00395
3   chr13   63122395       64412058     NR_047029     LINC00448
6   chr13   63122395       64412058     NR_126409     LINC00376
7   chr13   63122395       64412058     NR_130763  LOC102723968
8   chr14   21911414       22013641  NM_001163380         RAB2B
9   chr14   21911414       22013641  NM_001303523          TOX4
10  chr14   21911414       22013641     NM_019852        METTL3
12  chr14   21911414       22013641     NR_111966         SALL2
14  chr16   14991023       15143960  NM_001270767         NTAN1
15  chr16   14991023       15143960  NM_001285445        PDXDC1
21  chr16   14991023       15143960     NM_006985        NPIPA1
22  chr16   14991023       15143960     NR_036140     MIR3179-1
23  chr16   14991023       15143960     NR_036141     MIR3180-1
24  chr16   14991023       15143960     NR_036142     MIR3180-2
25  chr16   14991023       15143960     NR_103772  LOC100288162
26  chr16   14991023       15143960     NR_106970     MIR6511A3
27  chr16   14991023       15143960     NR_107060     MIR6770-2
28  chr16   14991023       15143960     NR_128713     MIR3670-4
29  chr22   19037830       19183255  NM_001184781         DGCR2
30  chr22   19037830       19183255  NM_001256534       SLC25A1
31  chr22   19037830       19183255     NM_001835        CLTCL1
32  chr22   19037830       19183255     NM_005315          GSC2
34  chr22   19037830       19183255     NM_022719        DGCR14
35  chr22   19037830       19183255     NM_053006         TSSK2
36  chr22   19037830       19183255     NR_103767     LINC01311,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  233696578      233836643     NM_002245         KCNK1
1    chr1  233696578      233836643     NR_039625       MIR4427
2   chr14   21762692       21907765  NM_001170629          CHD8
3   chr14   21762692       21907765     NM_007192       SUPT16H
4   chr14   21762692       21907765     NM_020366       RPGRIP1
6   chr14   21762692       21907765     NR_002916        SNORD8
7   chr14   21762692       21907765     NR_003029        SNORD9
8    chr3  148122481      148545323     NM_009585         AGTR1
10   chr6  161890965      162007457     NM_013988         PARK2
11   chr6  161890965      162007457     NR_134594  LOC105378098,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   61761101       61939544     NM_001796          CDH8
1   chr22   17231783       17735768  NM_001037814          GAB4
2   chr22   17231783       17735768  NM_001163079         CECR6
3   chr22   17231783       17735768  NM_001282227         CECR1
5   chr22   17231783       17735768  NM_001289905        IL17RA
6   chr22   17231783       17735768     NM_017829         CECR5
9   chr22   17231783       17735768     NM_175878          XKR3
11  chr22   17231783       17735768     NR_003607       HSFY1P1
12  chr22   17231783       17735768     NR_015352         CECR7
13  chr22   17231783       17735768     NR_024482     CECR5-AS1
14  chr22   17231783       17735768     NR_103793  LOC100996342
15   chr3     293780         396428  NM_001253387          CHL1
17   chr4    3953393        4542798  NM_001040101          NSG1
18   chr4    3953393        4542798  NM_001145725          LYAR
19   chr4    3953393        4542798  NM_001297551       TMEM128
20   chr4    3953393        4542798  NM_001346282         STX18
25   chr4    3953393        4542798     NM_145291        ZBTB49
26   chr4    3953393        4542798     NM_177998         OTOP1
27   chr4    3953393        4542798     NR_126434     STX18-IT1
28   chr4    3953393        4542798     NR_130741       FAM86EP
29   chr7   64146713       64333656  NM_001160183        ZNF138
30   chr7   64146713       64333656  NM_001282360        ZNF107,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143135977      144096560  NM_001123068       PPIAL4G
1    chr1  143135977      144096560  NM_001287385        FAM72C
2    chr1  143135977      144096560  NM_001345942        FAM72D
6    chr1  143135977      144096560     NR_104014     LINC01138
7    chr1  143135977      144096560     NR_106967       MIR6077
8    chr1  143135977      144096560     NR_110761  LOC102723769
9    chr1  143135977      144096560     NR_111930  LOC100132057
11  chr11   48390414       48684419  NM_001005512        OR4A47
12  chr14   47769079       47870451  NM_001113498         MDGA2
15   chr5   17578375       17834816     NR_134286     LOC646241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143149656      143249930     NR_110761  LOC102723769
1    chr1  145130380      145296739  NM_001277444         NBPF9
2    chr1  145130380      145296739  NM_001278267        NBPF20
3    chr1  145130380      145296739  NM_001302371        NBPF10
4    chr1  145130380      145296739     NM_203458      NOTCH2NL
5    chr1  145130380      145296739     NR_104217       NBPF25P
6    chr1  162792284      162991047     NM_178550       CCDC190
7   chr10   68613776       68742565  NM_001127384        CTNNA3
9   chr10   68613776       68742565     NM_178011        LRRTM3
10  chr10   68613776       68742565     NR_111911  LOC101928961
11  chr13   71703967       71849726     NR_047699     LINC00348
12  chr14   21824998       21992153  NM_001163380         RAB2B
13  chr14   21824998       21992153  NM_001170629          CHD8
14  chr14   21824998       21992153  NM_001303523          TOX4
15  chr14   21824998       21992153     NM_007192       SUPT16H
16  chr14   21824998       21992153     NM_019852        METTL3
19  chr14   21824998       21992153     NR_002916        SNORD8
20  chr14   21824998       21992153     NR_003029        SNORD9
21  chr14   21824998       21992153     NR_111966         SALL2
23  chr15   28123871       28315038     NM_000275          OCA2
25  chr19   21847711       22019210  NM_001256650         ZNF43
27  chr19   21847711       22019210     NM_173531        ZNF100
28  chr19   21847711       22019210     NR_024523     LOC641367
29  chr20    5160704        5269148     NM_003818          CDS2
30   chr3  172073897      172202955  NM_001135095        FNDC3B
31   chr3  172073897      172202955     NM_004122          GHSR
34   chr6  145836395      146304030  NM_001042683         SHPRH
35   chr6  145836395      146304030     NM_005670         EPM2A
36   chr6  145836395      146304030     NM_032145        FBXO30
37   chr6  145836395      146304030     NR_038245  LOC100507557
39   chr7  117562726      117880566     NM_016200          LSM8
40   chr7  117562726      117880566     NM_019644        ANKRD7
41   chr9   41880026       42093489     NR_003670        FGF7P3
42   chr9   41880026       42093489     NR_015363         GLIDR
45   chr9   41880026       42093489     NR_126048  LOC102724238
46   chr9   41880026       42093489     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21946838       22193501  NM_001001912      OR4E2
1   chr14   21946838       22193501  NM_001005465     OR10G3
2   chr14   21946838       22193501  NM_001005466     OR10G2
3   chr14   21946838       22193501  NM_001303523       TOX4
4   chr14   21946838       22193501  NM_001317107      OR4E1
5   chr14   21946838       22193501     NM_019852     METTL3
6   chr14   21946838       22193501     NR_111966      SALL2
8    chr2   69539779       69706138  NM_001244710      GFPT1
9    chr2   69539779       69706138     NM_014911       AAK1
10   chr2   69539779       69706138     NM_015700       NFU1
11   chr2  242495330      242673664  NM_001164356      THAP4
12   chr2  242495330      242673664  NM_001165031      DTYMK
13   chr2  242495330      242673664  NM_001330161       ING5
17   chr2  242495330      242673664     NM_032515        BOK
18   chr2  242495330      242673664     NM_178326      ATG4B
19   chr2  242495330      242673664     NR_033346    BOK-AS1
20  chr22   19923602       20035722     NM_000754       COMT
23  chr22   19923602       20035722  NM_001282512     TXNRD2
24  chr22   19923602       20035722  NM_001283116     TANGO2
27  chr22   19923602       20035722     NM_001670      ARVCF
30  chr22   19923602       20035722     NR_029706     MIR185
31  chr22   19923602       20035722     NR_039918    MIR4761
32   chr7  110610525      110962640  NM_001099658      LRRN3
33   chr7  110610525      110962640  NM_001244606     IMMP2L
35   chr9   41438933       41540993  NM_001113541  SPATA31A5
36   chr9   41438933       41540993     NM_015667  SPATA31A7
37   chr9   41438933       41540993     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr18    1704912        3055270  NM_001308401       METTL4
1   chr18    1704912        3055270     NM_006101        NDC80
2   chr18    1704912        3055270     NM_014646        LPIN2
3   chr18    1704912        3055270     NM_015295       SMCHD1
4   chr18    1704912        3055270     NM_032048      EMILIN2
5   chr18    1704912        3055270     NR_026659    LOC727896
6   chr18    1704912        3055270     NR_033754       CBX3P2
7   chr20   14797088       14926847     NM_080676      MACROD2
8   chr20   14797088       14926847     NR_037841  MACROD2-AS1
10   chr4     494858         694332     NM_000283        PDE6B
12   chr4     494858         694332  NM_001289053         PIGG
13   chr4     494858         694332  NM_001294341        MFSD7
14   chr4     494858         694332     NM_002477         MYL5
15   chr4     494858         694332     NM_007100        ATP5I,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   47876928       48006663  NM_001113498         MDGA2
1   chr16   18473167       18601820  NM_001004060         NOMO2
2   chr16   18473167       18601820     NR_003569       ABCC6P1
3   chr16   18473167       18601820     NR_036140     MIR3179-1
4   chr16   18473167       18601820     NR_036142     MIR3180-2
5   chr16   18473167       18601820     NR_036144     MIR3180-3
6   chr16   18473167       18601820     NR_037442     MIR3670-1
7   chr16   18473167       18601820     NR_107060     MIR6770-2
8   chr16   68591273       68725073  NM_001305204         ZFP90
10  chr16   68591273       68725073  NM_001317195          CDH3
11   chr2   35389161       36237105     NR_039629      MIR548AD
12   chr6  162657853      162812431     NM_013988         PARK2
13   chr7  110688022      110811144  NM_001099658         LRRN3
14   chr7  110688022      110811144  NM_001244606        IMMP2L
16   chr7  142992607      143128602     NM_000083         CLCN1
17   chr7  142992607      143128602     NM_001224         CASP2
18   chr7  142992607      143128602  NM_001278297       FAM131B
19   chr7  142992607      143128602  NM_001322263  LOC100507507
20   chr7  142992607      143128602     NM_003461           ZYX
21   chr7  142992607      143128602     NM_005232         EPHA1
24   chr7  142992607      143128602     NR_033897     EPHA1-AS1
25   chr7  142992607      143128602     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21762330       21954862  NM_001163380      RAB2B
1   chr14   21762330       21954862  NM_001170629       CHD8
2   chr14   21762330       21954862  NM_001303523       TOX4
3   chr14   21762330       21954862     NM_007192    SUPT16H
4   chr14   21762330       21954862     NM_020366    RPGRIP1
7   chr14   21762330       21954862     NR_002916     SNORD8
8   chr14   21762330       21954862     NR_003029     SNORD9
9   chr16   68584538       68899392  NM_001305204      ZFP90
11  chr16   68584538       68899392  NM_001317184       CDH1
12  chr16   68584538       68899392  NM_001317195       CDH3
13  chr16   68584538       68899392     NM_024562     TANGO6
14  chr16   68584538       68899392     NR_106988  MIR7641-2
15   chr7  110529257      110814390  NM_001099658      LRRN3
16   chr7  110529257      110814390  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   97423963       98544620     NM_000110          DPYD
2    chr1   97423963       98544620     NR_029679        MIR137
3    chr1   97423963       98544620     NR_039604       MIR2682
4    chr1   97423963       98544620     NR_046105      MIR137HG
5    chr1   97423963       98544620     NR_046590      DPYD-AS1
6    chr1   97423963       98544620     NR_046591      DPYD-AS2
7   chr16   18354227       18496690  NM_001282511        NPIPA8
8   chr16   18354227       18496690     NR_036142     MIR3180-2
9   chr16   18354227       18496690     NR_036144     MIR3180-3
10  chr16   18354227       18496690     NR_103772  LOC100288162
11  chr16   18354227       18496690     NR_106971     MIR6511A4
12  chr16   18354227       18496690     NR_107060     MIR6770-2
13   chr7   63865639       64100777  NM_001130022        ZNF680
15   chr7   63865639       64100777     NR_029404       YWHAEP1
16   chr7   63865639       64100777     NR_033245     LOC641746
17   chr7   63865639       64100777     NR_077227  LOC100128885,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21709863       21958041  NM_001163380         RAB2B
1   chr14   21709863       21958041  NM_001170629          CHD8
2   chr14   21709863       21958041  NM_001303523          TOX4
3   chr14   21709863       21958041     NM_007192       SUPT16H
4   chr14   21709863       21958041     NM_020366       RPGRIP1
6   chr14   21709863       21958041     NM_031314        HNRNPC
8   chr14   21709863       21958041     NR_002916        SNORD8
9   chr14   21709863       21958041     NR_003029        SNORD9
10  chr18   24721844       24957338  NM_001256316         CHST9
11  chr18   24721844       24957338     NR_134589  LOC105372038
12   chr5   59858420       60058938  NM_001145208       DEPDC1B
13   chr5   59858420       60058938     NM_024930        ELOVL7
14   chr9    2471276        2599301     NR_015375     VLDLR-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67155024       67324122  NM_001018070        CORO1B
1   chr11   67155024       67324122  NM_001078650       TMEM134
2   chr11   67155024       67324122  NM_001166222        CARNS1
3   chr11   67155024       67324122  NM_001243224         RAD9A
4   chr11   67155024       67324122  NM_001256508      TBC1D10C
5   chr11   67155024       67324122  NM_001300895         CABP4
7   chr11   67155024       67324122  NM_001302959           AIP
8   chr11   67155024       67324122  NM_001318496         CABP2
9   chr11   67155024       67324122     NM_002708        PPP1CA
10  chr11   67155024       67324122     NM_003952       RPS6KB2
13  chr11   67155024       67324122     NM_004910       PITPNM1
14  chr11   67155024       67324122     NM_005608       PTPRCAP
15  chr11   67155024       67324122     NM_005851       CDK2AP2
18  chr11   67155024       67324122     NM_206997        GPR152
19  chr11   67155024       67324122     NR_024469  LOC100130987
22  chr11   67155024       67324122     NR_106810       MIR6752
23  chr13   19650420       19803686     NM_006001        TUBA3C
24  chr13   19650420       19803686     NR_126054  LOC101928697
25  chr14   21578655       22017767  NM_001004731        OR5AU1
26  chr14   21578655       22017767  NM_001163380         RAB2B
27  chr14   21578655       22017767  NM_001170629          CHD8
28  chr14   21578655       22017767  NM_001303523          TOX4
29  chr14   21578655       22017767     NM_007192       SUPT16H
30  chr14   21578655       22017767     NM_019852        METTL3
31  chr14   21578655       22017767     NM_020366       RPGRIP1
33  chr14   21578655       22017767     NM_031314        HNRNPC
35  chr14   21578655       22017767     NR_002916        SNORD8
36  chr14   21578655       22017767     NR_003029        SNORD9
37  chr14   21578655       22017767     NR_038970     LINC00641
39  chr14   21578655       22017767     NR_111966         SALL2
41  chr15   28754271       28855353     NR_033351       GOLGA8F
42  chr15   28754271       28855353     NR_033353       GOLGA8G
43  chr15   58876563       58993874     NM_001110        ADAM10
44  chr15   58876563       58993874     NR_073415     HSP90AB4P
45  chr18   63273195       63442471  NM_001317214          CDH7
48  chr19   23677452       23974685     NM_138286        ZNF681
49  chr19   23677452       23974685     NM_138330        ZNF675
50  chr19   23677452       23974685     NR_003662       RPSAP58
51   chr5   16033070       16248160  NM_001102562       MARCH11,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1    2784910        3888401  NM_001126241          TP73
1    chr1    2784910        3888401  NM_001163724         SMIM1
5    chr1    2784910        3888401  NM_001320136          DFFB
6    chr1    2784910        3888401     NM_001409         MEGF6
7    chr1    2784910        3888401     NM_014448      ARHGEF16
8    chr1    2784910        3888401     NM_014704        CEP104
9    chr1    2784910        3888401     NM_017818        WRAP73
10   chr1    2784910        3888401     NM_020710        LRRC47
11   chr1    2784910        3888401     NM_080431        ACTRT2
12   chr1    2784910        3888401     NM_152492        CCDC27
13   chr1    2784910        3888401     NM_182752        TPRG1L
14   chr1    2784910        3888401     NM_199454        PRDM16
15   chr1    2784910        3888401     NM_207356      C1orf174
16   chr1    2784910        3888401     NR_015440     LINC00982
18   chr1    2784910        3888401     NR_024455     LINC01134
19   chr1    2784910        3888401     NR_030277       MIR551A
20   chr1    2784910        3888401     NR_033708      TP73-AS1
22   chr1    2784910        3888401     NR_036215       MIR4251
23   chr1  143503599      145174245  NM_001002810       PDE4DIP
26   chr1  143503599      145174245  NM_001123068       PPIAL4G
27   chr1  143503599      145174245  NM_001135789       PPIAL4C
32   chr1  143503599      145174245  NM_001277444         NBPF9
33   chr1  143503599      145174245  NM_001278267        NBPF20
34   chr1  143503599      145174245  NM_001287385        FAM72C
35   chr1  143503599      145174245  NM_001345942        FAM72D
38   chr1  143503599      145174245     NM_004892        SEC22B
41   chr1  143503599      145174245     NR_003242        PFN1P2
42   chr1  143503599      145174245     NR_024511     LINC00623
44   chr1  143503599      145174245     NR_102405         NBPF8
45   chr1  143503599      145174245     NR_104014     LINC01138
..    ...        ...            ...           ...           ...
50  chr10   81511575       81744949     NM_003019         SFTPD
51  chr10   81511575       81744949     NR_002724         MBL1P
52  chr10   81511575       81744949     NR_029407     LOC642361
53  chr10   81511575       81744949     NR_033857       BMS1P21
54  chr10   81511575       81744949     NR_120611    NUTM2B-AS1
57  chr11   48401903       48860857  NM_001005512        OR4A47
58  chr14   67431380       67659803     NM_020806          GPHN
59  chr14   67431380       67659803     NM_173526        FAM71D
60  chr14   81642986       81771705  NM_001256430         STON2
61  chr14   81642986       81771705  NM_001278940        GTF2A1
64  chr14   81642986       81771705     NR_003021       SNORA79
65  chr14   81642986       81771705     NR_135252  LOC101928504
66   chr2   97210032       97339767  NM_001115016        KANSL3
67   chr2   97210032       97339767  NM_001293083        FER1L5
68   chr2   97210032       97339767  NM_001319085        ARID5A
71   chr8    7177438        7359522  NM_001040705      DEFB107B
72   chr8    7177438        7359522  NM_001081551      DEFB103A
73   chr8    7177438        7359522  NM_001164457       ZNF705G
74   chr8    7177438        7359522  NM_001205266        DEFB4B
75   chr8    7177438        7359522  NM_001256873       USP17L1
76   chr8    7177438        7359522  NM_001256874       USP17L4
77   chr8    7177438        7359522     NM_058200       SPAG11B
81   chr8    7177438        7359522     NM_080389      DEFB104A
82   chr8    7177438        7359522     NM_152250      DEFB105A
83   chr8    7177438        7359522     NM_152251      DEFB106A
84   chr8    7177438        7359522     NR_003668    DEFB109P1B
85   chr8    7177438        7359522     NR_027423        FAM66B
86   chr9  101909820      102017996     NM_004612        TGFBR1
87   chr9  101909820      102017996     NM_006808        SEC61B
88   chr9  101909820      102017996     NM_033087          ALG2

[63 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   27032364       27203290     NM_002515         NOVA1
2   chr15   28706820       29174958  NM_001282468       GOLGA8M
3   chr15   28706820       29174958     NR_026589       WHAMMP2
4   chr15   28706820       29174958     NR_033351       GOLGA8F
5   chr15   28706820       29174958     NR_033353       GOLGA8G
6   chr15   28706820       29174958     NR_036443       HERC2P9
7   chr15   28706820       29174958     NR_036475  LOC100289656
8   chr15   28706820       29174958     NR_037599     PDCD6IPP2
9   chr15   28706820       29174958     NR_039734     MIR4509-3
10  chr15   28706820       29174958     NR_047567     GOLGA6L7P
11   chr5   59850597       59989525  NM_001145208       DEPDC1B,      chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr14   21900080       25340015     NM_000257           MYH7
1    chr14   21900080       25340015     NM_000359           TGM1
2    chr14   21900080       25340015  NM_001001912          OR4E2
3    chr14   21900080       25340015  NM_001002000          GMPR2
5    chr14   21900080       25340015  NM_001005465         OR10G3
6    chr14   21900080       25340015  NM_001005466         OR10G2
7    chr14   21900080       25340015  NM_001014842         TM9SF1
8    chr14   21900080       25340015  NM_001018073           PCK2
9    chr14   21900080       25340015  NM_001039619          PRMT5
10   chr14   21900080       25340015  NM_001039771          CBLN3
11   chr14   21900080       25340015  NM_001042635           NGDN
12   chr14   21900080       25340015  NM_001048205           REC8
13   chr14   21900080       25340015  NM_001099274          TINF2
14   chr14   21900080       25340015  NM_001099780         PSMB11
15   chr14   21900080       25340015  NM_001126105         SLC7A7
17   chr14   21900080       25340015  NM_001130706       C14orf93
18   chr14   21900080       25340015  NM_001130725          PSMB5
19   chr14   21900080       25340015  NM_001136022         NFATC4
20   chr14   21900080       25340015  NM_001136050          DHRS1
21   chr14   21900080       25340015  NM_001143919          LTB4R
23   chr14   21900080       25340015  NM_001146028           JPH4
24   chr14   21900080       25340015  NM_001163380          RAB2B
25   chr14   21900080       25340015  NM_001163484         DCAF11
26   chr14   21900080       25340015  NM_001164692         LTB4R2
27   chr14   21900080       25340015  NM_001164815          ACIN1
29   chr14   21900080       25340015  NM_001184739          TSSK4
30   chr14   21900080       25340015  NM_001193635        DHRS4L2
33   chr14   21900080       25340015  NM_001199823     NEDD8-MDP1
34   chr14   21900080       25340015  NM_001199839         BCL2L2
35   chr14   21900080       25340015  NM_001199864  BCL2L2-PABPN1
..     ...        ...            ...           ...            ...
95   chr14   21900080       25340015     NM_019852         METTL3
97   chr14   21900080       25340015     NM_020834          HOMEZ
98   chr14   21900080       25340015     NM_020920           CHD8
99   chr14   21900080       25340015     NM_022060          ABHD4
100  chr14   21900080       25340015     NM_022478          CDH24
101  chr14   21900080       25340015     NM_022789           IL25
102  chr14   21900080       25340015     NM_025081         NYNRIN
106  chr14   21900080       25340015     NM_033400          ZFHX2
107  chr14   21900080       25340015     NM_033423           GZMH
108  chr14   21900080       25340015     NM_138360        CARMIL3
110  chr14   21900080       25340015     NM_138460          CMTM5
111  chr14   21900080       25340015     NM_138476           MDP1
112  chr14   21900080       25340015     NM_139247          ADCY4
114  chr14   21900080       25340015     NM_173527           REM2
117  chr14   21900080       25340015     NM_182836        RABGGTA
121  chr14   21900080       25340015     NM_203402          FITM1
122  chr14   21900080       25340015     NR_023921      DHRS4-AS1
125  chr14   21900080       25340015     NR_029595        MIR208A
126  chr14   21900080       25340015     NR_030624        MIR208B
127  chr14   21900080       25340015     NR_039856        MIR4707
131  chr14   21900080       25340015     NR_051979           IPO4
132  chr14   21900080       25340015     NR_102688        DHRS4L1
134  chr14   21900080       25340015     NR_106990        MIR7703
135  chr14   21900080       25340015     NR_110002   LOC101926933
136  chr14   21900080       25340015     NR_110032   LOC101927045
138  chr14   21900080       25340015     NR_110555   LOC102724814
139  chr14   21900080       25340015     NR_111966          SALL2
141  chr14   21900080       25340015     NR_120599      PRMT5-AS1
142  chr14   21900080       25340015     NR_126491           MHRT
144   chr7   69265359       69453357  NM_001127231          AUTS2

[101 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21882181       22141712  NM_001001912      OR4E2
1   chr14   21882181       22141712  NM_001005465     OR10G3
2   chr14   21882181       22141712  NM_001005466     OR10G2
3   chr14   21882181       22141712  NM_001163380      RAB2B
4   chr14   21882181       22141712  NM_001170629       CHD8
5   chr14   21882181       22141712  NM_001303523       TOX4
6   chr14   21882181       22141712  NM_001317107      OR4E1
7   chr14   21882181       22141712     NM_019852     METTL3
10  chr14   21882181       22141712     NR_111966      SALL2
12  chr16   16452749       16556601  NM_001282511     NPIPA8
13  chr16   16452749       16556601     NR_106971  MIR6511A4
14   chr6  162680122      162794010     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27642034       27755722  NM_001034842        PTCHD3
1   chr10   67852421       67977181  NM_001127384        CTNNA3
3   chr16   16375730       16497410  NM_001004067         NOMO3
4   chr16   16375730       16497410  NM_001282511        NPIPA8
5   chr16   16375730       16497410     NR_036140     MIR3179-1
6   chr16   16375730       16497410     NR_036141     MIR3180-1
7   chr16   16375730       16497410     NR_036142     MIR3180-2
8   chr16   16375730       16497410     NR_036447        PKD1P1
9   chr16   16375730       16497410     NR_103772  LOC100288162
10  chr16   16375730       16497410     NR_106766     MIR6511A1
11  chr16   16375730       16497410     NR_106971     MIR6511A4
12  chr16   16375730       16497410     NR_107060     MIR6770-2
13  chr16   16375730       16497410     NR_128713     MIR3670-4
14   chr4   69288602       69598237     NM_001076       UGT2B15
15   chr4   69288602       69598237     NM_001077       UGT2B17
16   chr4   69288602       69598237     NM_014058     TMPRSS11E
17   chr9  116589387      116711131  NM_001318041        ZNF618,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28690348       30098872  NM_001130414         APBA2
1   chr15   28690348       30098872  NM_001282468       GOLGA8M
2   chr15   28690348       30098872  NM_001301025          TJP1
5   chr15   28690348       30098872     NM_015307      FAM189A1
6   chr15   28690348       30098872     NM_138704        NSMCE3
7   chr15   28690348       30098872     NR_026589       WHAMMP2
8   chr15   28690348       30098872     NR_033351       GOLGA8F
9   chr15   28690348       30098872     NR_033353       GOLGA8G
10  chr15   28690348       30098872     NR_036443       HERC2P9
11  chr15   28690348       30098872     NR_036475  LOC100289656
12  chr15   28690348       30098872     NR_037599     PDCD6IPP2
13  chr15   28690348       30098872     NR_039734     MIR4509-3
14  chr15   28690348       30098872     NR_047567     GOLGA6L7P
15  chr15   28690348       30098872     NR_135221  LOC100130111
16   chr2  242469999      243011044  NM_001164356         THAP4
17   chr2  242469999      243011044  NM_001165031         DTYMK
18   chr2  242469999      243011044  NM_001167601          NEU4
20   chr2  242469999      243011044  NM_001287249        D2HGDH
21   chr2  242469999      243011044  NM_001330161          ING5
23   chr2  242469999      243011044     NM_005018         PDCD1
25   chr2  242469999      243011044     NM_022134       GAL3ST2
27   chr2  242469999      243011044     NM_032515           BOK
28   chr2  242469999      243011044     NM_173821          RTP5
29   chr2  242469999      243011044     NM_178326         ATG4B
30   chr2  242469999      243011044     NR_033346       BOK-AS1
31   chr2  242469999      243011044     NR_110220     LINC01237
32   chr2  242469999      243011044     NR_110592  LOC102723927
33   chr2  242469999      243011044     NR_135766     LOC285095
36  chr20    9098733        9804447     NM_000933         PLCB4
38  chr20    9098733        9804447     NM_012261         LAMP5
39  chr20    9098733        9804447     NM_177990          PAK5
41  chr20    9098733        9804447     NR_109957     LAMP5-AS1
42   chr9  119722176      119835628     NM_014010         ASTN2,     chrom  cnv_start  cnv_terminate       tx_name               gene_name
0   chr14   21844111       21987579  NM_001163380                   RAB2B
1   chr14   21844111       21987579  NM_001170629                    CHD8
2   chr14   21844111       21987579  NM_001303523                    TOX4
3   chr14   21844111       21987579     NM_007192                 SUPT16H
4   chr14   21844111       21987579     NM_019852                  METTL3
7   chr14   21844111       21987579     NR_002916                  SNORD8
8   chr14   21844111       21987579     NR_003029                  SNORD9
9    chr7   75723298       76707685  NM_001102594                    DTX2
11   chr7   75723298       76707685  NM_001110199                   SRRM3
12   chr7   75723298       76707685  NM_001110354                     ZP3
13   chr7   75723298       76707685     NM_001540                   HSPB1
15   chr7   75723298       76707685     NM_012479                   YWHAG
16   chr7   75723298       76707685     NM_030570                   UPK3B
17   chr7   75723298       76707685     NM_080744                   SSC4D
18   chr7   75723298       76707685     NM_152992                  POMZP3
19   chr7   75723298       76707685     NR_003262                  FDPSP2
20   chr7   75723298       76707685     NR_023383  DTX2P1-UPK3BP1-PMS2P11
21   chr7   75723298       76707685     NR_028058                  PMS2P9
22   chr7   75723298       76707685     NR_029411            LOC100133091
23   chr7   75723298       76707685     NR_135079                 GTF2IP7,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   27616313       28124975  NM_001034842    PTCHD3
1   chr10   27616313       28124975  NM_001242702       MKX
2   chr10   27616313       28124975  NM_001256411     RAB18
3   chr10   27616313       28124975  NM_001290020     ARMC4
7   chr10   27616313       28124975     NR_121652   MKX-AS1
8   chr10   27616313       28124975     NR_138082   ARMC4P1
9   chr14   21796779       21947500  NM_001163380     RAB2B
10  chr14   21796779       21947500  NM_001170629      CHD8
11  chr14   21796779       21947500  NM_001303523      TOX4
12  chr14   21796779       21947500     NM_007192   SUPT16H
13  chr14   21796779       21947500     NM_020366   RPGRIP1
16  chr14   21796779       21947500     NR_002916    SNORD8
17  chr14   21796779       21947500     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   54707019       55211004     NR_031628       MIR1297
1   chr15   28608228       29119441  NM_001282468       GOLGA8M
2   chr15   28608228       29119441     NR_026589       WHAMMP2
3   chr15   28608228       29119441     NR_033351       GOLGA8F
5   chr15   28608228       29119441     NR_033353       GOLGA8G
7   chr15   28608228       29119441     NR_036443       HERC2P9
8   chr15   28608228       29119441     NR_036475  LOC100289656
9   chr15   28608228       29119441     NR_037599     PDCD6IPP2
10  chr15   28608228       29119441     NR_039734     MIR4509-3
12  chr15   28608228       29119441     NR_047567     GOLGA6L7P
13  chr18   24740385       24918375  NM_001256316         CHST9
14  chr18   24740385       24918375     NR_134589  LOC105372038
15   chr2   56543688       56711974  NM_001080433       CCDC85A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   29740428       30625265  NM_001282472       GOLGA8J
1   chr15   29740428       30625265  NM_001301025          TJP1
4   chr15   29740428       30625265     NM_015307      FAM189A1
5   chr15   29740428       30625265     NR_026771  DKFZP434L187
6   chr15   29740428       30625265     NR_026859        ULK4P3
7   chr15   29740428       30625265     NR_033933       GOLGA8T
8   chr15   29740428       30625265     NR_135221  LOC100130111
9   chr16   16380851       16493152  NM_001004067         NOMO3
10  chr16   16380851       16493152  NM_001282511        NPIPA8
11  chr16   16380851       16493152     NR_036140     MIR3179-1
12  chr16   16380851       16493152     NR_036141     MIR3180-1
13  chr16   16380851       16493152     NR_036142     MIR3180-2
14  chr16   16380851       16493152     NR_036447        PKD1P1
15  chr16   16380851       16493152     NR_103772  LOC100288162
16  chr16   16380851       16493152     NR_106766     MIR6511A1
17  chr16   16380851       16493152     NR_106971     MIR6511A4
18  chr16   16380851       16493152     NR_107060     MIR6770-2
19  chr16   16380851       16493152     NR_128713     MIR3670-4
20  chr21   22621943       22724170     NM_004540         NCAM2
21   chr7   71423705       71656726  NM_001017440         CALN1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   12759704       12937434  NM_001013631      HNRNPCL1
1   chr1   12759704       12937434  NM_001080830      PRAMEF12
2   chr1   12759704       12937434  NM_001103170       AADACL3
3   chr1   12759704       12937434  NM_001146181      HNRNPCL3
4   chr1   12759704       12937434  NM_001146344      PRAMEF11
5   chr1   12759704       12937434  NM_001294139       PRAMEF1
6   chr1   12759704       12937434  NM_001302551      HNRNPCL4
8   chr1   12759704       12937434     NM_023014       PRAMEF2
9   chr1   12759704       12937434     NM_152290      C1orf158
10  chr2   97172122       97516572  NM_001115016        KANSL3
11  chr2   97172122       97516572  NM_001293083        FER1L5
12  chr2   97172122       97516572  NM_001319085        ARID5A
14  chr2   97172122       97516572  NM_001322354        LMAN2L
15  chr2   97172122       97516572     NM_016466       ANKRD39
16  chr2   97172122       97516572     NM_017623         CNNM3
17  chr2   97172122       97516572     NM_020184         CNNM4
19  chr2   97172122       97516572     NM_144994       ANKRD23
20  chr2   97172122       97516572     NR_036074       MIR3127
22  chr2   97172122       97516572     NR_104346        NEURL3
23  chr2   97172122       97516572     NR_135564  LOC105373496
24  chr2  186592200      186807322     NM_173651         FSIP2
25  chr2  186592200      186807322     NR_110214  LOC101927196
28  chr2  186592200      186807322     NR_144453     FSIP2-AS1
30  chr6  162793309      163028052     NM_013988         PARK2
31  chr7    2733041        2885397  NM_001282440         GNA12
33  chr7    2733041        2885397  NM_001284355          AMZ1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   21750061       21950369  NM_001163380      RAB2B
1  chr14   21750061       21950369  NM_001170629       CHD8
2  chr14   21750061       21950369  NM_001303523       TOX4
3  chr14   21750061       21950369     NM_007192    SUPT16H
4  chr14   21750061       21950369     NM_020366    RPGRIP1
7  chr14   21750061       21950369     NR_002916     SNORD8
8  chr14   21750061       21950369     NR_003029     SNORD9
9   chr4  189441750      189550137     NR_033869  LINC01060,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18189446       18586418  NM_001004060         NOMO2
1   chr16   18189446       18586418  NM_001282511        NPIPA8
2   chr16   18189446       18586418     NR_003569       ABCC6P1
3   chr16   18189446       18586418     NR_036140     MIR3179-1
4   chr16   18189446       18586418     NR_036142     MIR3180-2
5   chr16   18189446       18586418     NR_036144     MIR3180-3
6   chr16   18189446       18586418     NR_037442     MIR3670-1
7   chr16   18189446       18586418     NR_103772  LOC100288162
8   chr16   18189446       18586418     NR_106971     MIR6511A4
9   chr16   18189446       18586418     NR_107060     MIR6770-2
10  chr21   23115788       23262676     NR_109958     LINC01425
11   chr9    4369619        4867475  NM_001039395       SPATA6L
12   chr9    4369619        4867475  NM_001199853           AK3
15   chr9    4369619        4867475  NM_001286699          RCL1
17   chr9    4369619        4867475     NM_004170        SLC1A1
19   chr9    4369619        4867475     NM_017913       CDC37L1
20   chr9    4369619        4867475     NM_203453         PLPP6
21   chr9    4369619        4867475     NR_029836      MIR101-2
22   chr9    4369619        4867475     NR_121597   CDC37L1-AS1
23   chr9   20757304       20899375     NM_017794         FOCAD,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   78322994       78469814     NR_110287  LOC101927948
1   chr2   78322994       78469814     NR_110288  LOC101927967
2   chr3    2202809        3650585  NM_001173482          CRBN
3   chr3    2202809        3650585  NM_001206955         CNTN4
5   chr3    2202809        3650585  NM_001302946         TRNT1
7   chr3    2202809        3650585     NM_175726         IL5RA
10  chr3    2202809        3650585     NR_046554     CNTN4-AS1
11  chr3    2353971        2505903  NM_001206955         CNTN4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28663437       29048426  NM_001282468       GOLGA8M
1   chr15   28663437       29048426     NR_026589       WHAMMP2
2   chr15   28663437       29048426     NR_033351       GOLGA8F
3   chr15   28663437       29048426     NR_033353       GOLGA8G
4   chr15   28663437       29048426     NR_036443       HERC2P9
5   chr15   28663437       29048426     NR_036475  LOC100289656
6   chr15   28663437       29048426     NR_037599     PDCD6IPP2
7   chr15   28663437       29048426     NR_039734     MIR4509-3
9    chr3  197134425      197898015     NM_000996        RPL35A
10   chr3  197134425      197898015  NM_001011537        FYTTD1
11   chr3  197134425      197898015  NM_001145248       FAM157A
12   chr3  197134425      197898015  NM_001145642         RUBCN
14   chr3  197134425      197898015  NM_001323027          IQCG
19   chr3  197134425      197898015     NM_032773         LRCH3
20   chr3  197134425      197898015     NM_033029          LMLN
21   chr3  197134425      197898015     NM_203314          BDH1
23   chr3  197134425      197898015     NR_003266     LOC220729
24   chr3  197134425      197898015     NR_003291     ANKRD18DP
26   chr3  197134425      197898015     NR_030627        MIR922
27   chr3  197134425      197898015     NR_046669      LMLN-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245022343      245152350  NM_001143943        EFCAB2
2    chr1  245022343      245152350     NM_004501        HNRNPU
4    chr1  245022343      245152350     NR_111907  LOC101928068
5   chr16   16329786       16504247  NM_001004067         NOMO3
6   chr16   16329786       16504247  NM_001282511        NPIPA8
7   chr16   16329786       16504247     NR_036140     MIR3179-1
8   chr16   16329786       16504247     NR_036141     MIR3180-1
9   chr16   16329786       16504247     NR_036142     MIR3180-2
10  chr16   16329786       16504247     NR_036447        PKD1P1
11  chr16   16329786       16504247     NR_103772  LOC100288162
12  chr16   16329786       16504247     NR_106766     MIR6511A1
13  chr16   16329786       16504247     NR_106971     MIR6511A4
14  chr16   16329786       16504247     NR_107060     MIR6770-2
15  chr16   16329786       16504247     NR_128713     MIR3670-4
16   chr2   84684525       84917546     NM_001370         DNAH6
17   chr2   84684525       84917546     NM_003849        SUCLG1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  193263809      193393568     NR_125789     LINC01031
1  chr16   16433759       17005053  NM_001282511        NPIPA8
2  chr16   16433759       17005053     NR_036447        PKD1P1
3  chr16   16433759       17005053     NR_106971     MIR6511A4
4   chr9    9748793        9878228     NM_002839         PTPRD
5   chr9    9748793        9878228     NR_135135  LOC105375972
6   chr9   39104673       39292890     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37392649       37686725     NM_052997      ANKRD30A
1   chr10   37392649       37686725     NR_104061     LINC00993
2   chr14   21760949       21873485  NM_001170629          CHD8
3   chr14   21760949       21873485     NM_007192       SUPT16H
4   chr14   21760949       21873485     NM_020366       RPGRIP1
6   chr14   21760949       21873485     NR_002916        SNORD8
7   chr14   21760949       21873485     NR_003029        SNORD9
8   chr16   21509946       21919049  NM_001077180        METTL9
9   chr16   21509946       21919049  NM_001161683          OTOA
11  chr16   21509946       21919049  NM_001310148        NPIPB4
12  chr16   21509946       21919049     NM_005849         IGSF6
15  chr16   21509946       21919049     NR_002594      SLC7A5P2
16  chr16   21509946       21919049     NR_003370        RRN3P1
17  chr16   21509946       21919049     NR_027155        SMG1P3
18  chr16   21509946       21919049     NR_049833     MIR3680-2
19  chr16   21509946       21919049     NR_110930  LOC101927814
20   chr2  112419754      112701973     NM_006343         MERTK
21   chr2  112419754      112701973     NM_022662        ANAPC1
22   chr2  112419754      112701973     NR_039929     MIR4771-2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21796446       22239309  NM_001001912     OR4E2
1   chr14   21796446       22239309  NM_001005465    OR10G3
2   chr14   21796446       22239309  NM_001005466    OR10G2
3   chr14   21796446       22239309  NM_001163380     RAB2B
4   chr14   21796446       22239309  NM_001170629      CHD8
5   chr14   21796446       22239309  NM_001303523      TOX4
6   chr14   21796446       22239309  NM_001317107     OR4E1
7   chr14   21796446       22239309     NM_007192   SUPT16H
8   chr14   21796446       22239309     NM_019852    METTL3
9   chr14   21796446       22239309     NM_020366   RPGRIP1
12  chr14   21796446       22239309     NR_002916    SNORD8
13  chr14   21796446       22239309     NR_003029    SNORD9
14  chr14   21796446       22239309     NR_111966     SALL2
16  chr18   63240266       63440082  NM_001317214      CDH7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  224660916      224876242  NM_001322302         CNIH3
4    chr1  241744983      241876784     NM_001821          CHML
5    chr1  241744983      241876784     NM_003679           KMO
6    chr1  241744983      241876784     NM_014322          OPN3
7    chr1  241744983      241876784     NM_144625         WDR64
8   chr12    1009108        3536777  NM_001129827       CACNA1C
9   chr12    1009108        3536777  NM_001163925         LRTM2
10  chr12    1009108        3536777  NM_001168320        TSPAN9
11  chr12    1009108        3536777  NM_001243089         FOXM1
12  chr12    1009108        3536777  NM_001252499         RHNO1
13  chr12    1009108        3536777  NM_001256536         PRMT8
14  chr12    1009108        3536777  NM_001297419         RAD52
18  chr12    1009108        3536777  NM_001301248          ERC1
19  chr12    1009108        3536777  NM_001319292         DCP1B
20  chr12    1009108        3536777     NM_002014         FKBP4
21  chr12    1009108        3536777     NM_003213         TEAD4
22  chr12    1009108        3536777     NM_003324         TULP3
23  chr12    1009108        3536777     NM_018463         ITFG2
24  chr12    1009108        3536777     NM_018979          WNK1
25  chr12    1009108        3536777     NM_024551       ADIPOR2
26  chr12    1009108        3536777     NM_030775         WNT5B
27  chr12    1009108        3536777     NM_031474         NRIP2
29  chr12    1009108        3536777     NM_152441        FBXL14
31  chr12    1009108        3536777     NM_172364      CACNA2D4
35  chr12    1009108        3536777     NR_028415     LINC00942
36  chr12    1009108        3536777     NR_033958     LOC283440
37  chr12    1009108        3536777     NR_036546     LINC00940
38  chr12    1009108        3536777     NR_037422       MIR3649
39  chr12    1009108        3536777     NR_038933  LOC100507424
40  chr12    1009108        3536777     NR_045725   CACNA1C-AS1
42  chr12    1009108        3536777     NR_046578   CACNA1C-AS4
43  chr12    1009108        3536777     NR_046579   CACNA1C-AS2
44  chr12    1009108        3536777     NR_046768   CACNA1C-IT2
45  chr12    1009108        3536777     NR_046769   CACNA1C-IT3
48  chr14   21778323       21957733  NM_001163380         RAB2B
49  chr14   21778323       21957733  NM_001170629          CHD8
50  chr14   21778323       21957733  NM_001303523          TOX4
51  chr14   21778323       21957733     NM_007192       SUPT16H
52  chr14   21778323       21957733     NM_020366       RPGRIP1
55  chr14   21778323       21957733     NR_002916        SNORD8
56  chr14   21778323       21957733     NR_003029        SNORD9
57   chr5   99788582      100163812     NM_005668       ST8SIA4
58   chr5   99788582      100163812     NM_198507       FAM174A
59   chr5   99788582      100163812     NR_031686       MIR548P
60   chr9     310787         424510  NM_001190458         DOCK8,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr7   88949889       89084615  NM_181646   ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21891695       21998972  NM_001163380         RAB2B
1   chr14   21891695       21998972  NM_001170629          CHD8
2   chr14   21891695       21998972  NM_001303523          TOX4
3   chr14   21891695       21998972     NM_019852        METTL3
6   chr14   21891695       21998972     NR_111966         SALL2
8   chr16    8633263        9049252     NM_000303          PMM2
9   chr16    8633263        9049252     NM_000663          ABAT
10  chr16    8633263        9049252  NM_001042476       CARHSP1
16  chr16    8633263        9049252  NM_001286457          USP7
20  chr16    8633263        9049252     NM_015421       TMEM186
22  chr16    8633263        9049252     NM_024109       METTL22
24   chr2   62201656       62333625  NM_001321781        COMMD1
26   chr2   97188659       97533109  NM_001115016        KANSL3
27   chr2   97188659       97533109  NM_001293083        FER1L5
28   chr2   97188659       97533109  NM_001319085        ARID5A
30   chr2   97188659       97533109  NM_001322354        LMAN2L
31   chr2   97188659       97533109     NM_016466       ANKRD39
32   chr2   97188659       97533109     NM_017623         CNNM3
33   chr2   97188659       97533109     NM_017789        SEMA4C
34   chr2   97188659       97533109     NM_020184         CNNM4
36   chr2   97188659       97533109     NM_144994       ANKRD23
37   chr2   97188659       97533109     NR_036074       MIR3127
39   chr2   97188659       97533109     NR_135564  LOC105373496,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12663786       12766618  NM_001013630       AADACL4
1    chr1   12663786       12766618  NM_001319225         DHRS3
3    chr1   12708612       12880131  NM_001013630       AADACL4
4    chr1   12708612       12880131  NM_001080830      PRAMEF12
5    chr1   12708612       12880131  NM_001103170       AADACL3
6    chr1   12708612       12880131  NM_001294139       PRAMEF1
8    chr1   12708612       12880131     NM_152290      C1orf158
9   chr10   19651972       20371129  NM_001142308        MALRD1
10  chr10   19651972       20371129  NM_001282736        PLXDC2
11  chr10   19651972       20371129     NR_120646  LOC101928834
12  chr13   22399464       22577174     NR_047040     LINC00424
13  chr14   21772109       21884537  NM_001170629          CHD8
14  chr14   21772109       21884537     NM_007192       SUPT16H
15  chr14   21772109       21884537     NM_020366       RPGRIP1
17  chr14   21772109       21884537     NR_002916        SNORD8
18  chr14   21772109       21884537     NR_003029        SNORD9
19   chr3  189575309      189683524  NM_001114979          TP63
21   chr3  189575309      189683524  NM_001134418          P3H2
26   chr3  196749687      197098529  NM_001204386          DLG1
29   chr3  196749687      197098529     NM_005929         MELTF
31   chr3  196749687      197098529     NR_038289      DLG1-AS1
32   chr3  196749687      197098529     NR_039960       MIR4797
33   chr5  125610215      125866676  NM_001146319        GRAMD3
36   chr5  125610215      125866676     NR_105039  LOC101927488
37   chr9  102060986      102336275     NR_102270          NAMA,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17193348       17541269  NM_001037814          GAB4
1   chr22   17193348       17541269     NM_175878          XKR3
2   chr22   17193348       17541269     NR_003607       HSFY1P1
3   chr22   17193348       17541269     NR_015352         CECR7
4   chr22   17193348       17541269     NR_134584  LOC101929350
5    chr9   41845575       42285156     NR_003670        FGF7P3
6    chr9   41845575       42285156     NR_015363         GLIDR
9    chr9   41845575       42285156     NR_126048  LOC102724238
10   chr9   41845575       42285156     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48360147       48694606  NM_001005512     OR4A47
1   chr11   48360147       48694606  NM_001005513     OR4C45
2   chr12   83522708       83853976  NM_001320321      TMTC2
3   chr14   21793240       22258194  NM_001001912      OR4E2
4   chr14   21793240       22258194  NM_001005465     OR10G3
5   chr14   21793240       22258194  NM_001005466     OR10G2
6   chr14   21793240       22258194  NM_001163380      RAB2B
7   chr14   21793240       22258194  NM_001170629       CHD8
8   chr14   21793240       22258194  NM_001303523       TOX4
9   chr14   21793240       22258194  NM_001317107      OR4E1
10  chr14   21793240       22258194     NM_007192    SUPT16H
11  chr14   21793240       22258194     NM_019852     METTL3
12  chr14   21793240       22258194     NM_020366    RPGRIP1
15  chr14   21793240       22258194     NR_002916     SNORD8
16  chr14   21793240       22258194     NR_003029     SNORD9
17  chr14   21793240       22258194     NR_111966      SALL2
19   chr3  162938374      163335890     NR_033945  LINC01192
20   chr9   39012229       39142934     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   20787502       20889835  NM_001288713         NELL1
1   chr14   21845490       21985137  NM_001163380         RAB2B
2   chr14   21845490       21985137  NM_001170629          CHD8
3   chr14   21845490       21985137  NM_001303523          TOX4
4   chr14   21845490       21985137     NM_007192       SUPT16H
5   chr14   21845490       21985137     NM_019852        METTL3
8   chr14   21845490       21985137     NR_002916        SNORD8
9   chr14   21845490       21985137     NR_003029        SNORD9
10  chr16   21492096       21650725  NM_001077180        METTL9
12  chr16   21492096       21650725     NR_002594      SLC7A5P2
13  chr16   21492096       21650725     NR_027155        SMG1P3
14  chr16   21492096       21650725     NR_049833     MIR3680-2
15  chr16   21492096       21650725     NR_110930  LOC101927814
16   chr2   97223006       97367641  NM_001115016        KANSL3
17   chr2   97223006       97367641  NM_001293083        FER1L5
19  chr20   14801405       15123261     NM_080676       MACROD2
20  chr20   14801405       15123261     NR_037841   MACROD2-AS1
22   chr7  133240543      133528810     NM_021807         EXOC4
23   chr7  133240543      133528810     NR_120513  LOC101928861,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81502494       81659202     NR_029407     LOC642361
1   chr10   81502494       81659202     NR_120611    NUTM2B-AS1
4   chr11   79065414       79206463  NM_001098816         TENM4
5   chr11   79065414       79206463     NR_030598        MIR708
6   chr11   79065414       79206463     NR_049841       MIR5579
7   chr13   22339214       23871347     NM_000231          SGCG
8   chr13   22339214       23871347     NR_033774       BASP1P1
9   chr13   22339214       23871347     NR_047040     LINC00424
10  chr13   22339214       23871347     NR_103810     LINC00540
11  chr13   22339214       23871347     NR_138043     LINC00621
12   chr2  186259407      186891881     NM_173651         FSIP2
13   chr2  186259407      186891881     NR_110214  LOC101927196
16   chr2  186259407      186891881     NR_144453     FSIP2-AS1
18   chr7  110607951      110754559  NM_001099658         LRRN3
19   chr7  110607951      110754559  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   40708918       40810621  NM_001258419       LRRC4C
1   chr11   48308345       50056866  NM_001001955       OR4C13
2   chr11   48308345       50056866  NM_001004702        OR4C3
3   chr11   48308345       50056866  NM_001004725        OR4S1
4   chr11   48308345       50056866  NM_001005270       OR4C12
5   chr11   48308345       50056866  NM_001005512       OR4A47
6   chr11   48308345       50056866  NM_001005513       OR4C45
7   chr11   48308345       50056866  NM_001193472        FOLH1
8   chr11   48308345       50056866  NM_001206626      TRIM49B
9   chr11   48308345       50056866  NM_001206631      TRIM64C
10  chr11   48308345       50056866     NR_027044    LOC440040
11  chr16   76237791       76592368  NM_001322181      CNTNAP4
13  chr20   14669899       14779223     NM_080676      MACROD2
14  chr20   14678459       15664038  NM_001033087      MACROD2
16  chr20   14678459       15664038     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28693539       29124431  NM_001282468       GOLGA8M
1   chr15   28693539       29124431     NR_026589       WHAMMP2
2   chr15   28693539       29124431     NR_033351       GOLGA8F
3   chr15   28693539       29124431     NR_033353       GOLGA8G
4   chr15   28693539       29124431     NR_036443       HERC2P9
5   chr15   28693539       29124431     NR_036475  LOC100289656
6   chr15   28693539       29124431     NR_037599     PDCD6IPP2
7   chr15   28693539       29124431     NR_039734     MIR4509-3
8   chr15   28693539       29124431     NR_047567     GOLGA6L7P
9    chr3    4024319        4413074  NM_001164675         SUMF1
10   chr3    4024319        4413074  NM_001243723        SETMAR
12   chr3   26022613       27409075  NM_001304384         NEK10
13   chr3   26022613       27409075  NM_001317808        LRRC3B
20   chr7   64074915       64190313  NM_001282360        ZNF107
21   chr7   64074915       64190313     NR_077227  LOC100128885
23   chr7   64074915       64190313     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21752101       21974868  NM_001163380      RAB2B
1   chr14   21752101       21974868  NM_001170629       CHD8
2   chr14   21752101       21974868  NM_001303523       TOX4
3   chr14   21752101       21974868     NM_007192    SUPT16H
4   chr14   21752101       21974868     NM_019852     METTL3
5   chr14   21752101       21974868     NM_020366    RPGRIP1
8   chr14   21752101       21974868     NR_002916     SNORD8
9   chr14   21752101       21974868     NR_003029     SNORD9
10  chr15   20669969       21013469  NM_001145004   GOLGA6L6
11  chr15   20669969       21013469     NR_027411   GOLGA8CP
12  chr15   20669969       21013469     NR_027992     NBEAP1
13  chr15   20669969       21013469     NR_036432    HERC2P3
14  chr15   99917837      100057484  NM_001284400     LRRC28
16   chr2   51122494       51466545  NM_001330079      NRXN1
19   chr2   51122494       51466545     NR_135237  LOC730100
20   chr3    1164239        1291465  NM_001289081      CNTN6
21   chr3  189540243      189650271  NM_001114979       TP63
26   chr3  189540243      189650271     NR_030642     MIR944,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12    9411315        9616321     NR_024374     LOC642846
1   chr12    9411315        9616321     NR_033399        DDX12P
2   chr12    9411315        9616321     NR_120479  LOC101930452
3   chr12    9411315        9616321     NR_120481  LOC101928030
4   chr12    9411315        9616321     NR_137429     LINC00987
5   chr16   68607427       68794298  NM_001305204         ZFP90
6   chr16   68607427       68794298  NM_001317184          CDH1
7   chr16   68607427       68794298  NM_001317195          CDH3
8   chr16   68607427       68794298     NR_106988     MIR7641-2
9    chr2   82882248       83472287     NR_033423        DHFRP3
10  chr22   19044381       19453484  NM_001035247         UFD1L
11  chr22   19044381       19453484  NM_001166242      C22orf39
12  chr22   19044381       19453484  NM_001184781         DGCR2
13  chr22   19044381       19453484  NM_001256534       SLC25A1
14  chr22   19044381       19453484  NM_001318151        MRPL40
16  chr22   19044381       19453484     NM_001835        CLTCL1
17  chr22   19044381       19453484     NM_003325          HIRA
19  chr22   19044381       19453484     NM_005315          GSC2
21  chr22   19044381       19453484     NM_022719        DGCR14
22  chr22   19044381       19453484     NM_053006         TSSK2
24  chr22   19044381       19453484     NR_103767     LINC01311
25   chr4    8972809        9478510  NM_001040448       DEFB131
26   chr4    8972809        9478510  NM_001242326      USP17L25
34   chr4    8972809        9478510  NM_001256852      USP17L10
35   chr4    8972809        9478510  NM_001256853      USP17L12
37   chr4    8972809        9478510  NM_001256854      USP17L11
40   chr4    8972809        9478510  NM_001256855      USP17L13
41   chr4    8972809        9478510  NM_001256857      USP17L17
42   chr4    8972809        9478510  NM_001256860      USP17L19
43   chr4    8972809        9478510  NM_001256861      USP17L20
44   chr4    8972809        9478510  NM_001256894      USP17L15
45   chr4    8972809        9478510     NR_027279      USP17L6P
46   chr4    8972809        9478510     NR_046416      USP17L9P
47   chr7  110755599      110855821  NM_001099658         LRRN3
48   chr7  110755599      110855821  NM_001244606        IMMP2L
50   chr8    8148262        8381074  NM_001080826         PRAG1
51   chr9   41521407       41656716     NR_003528       ZNF658B
52   chr9   41521407       41656716     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   14701808       15465398  NM_001134477           PARN
1   chr16   14701808       15465398  NM_001270767          NTAN1
2   chr16   14701808       15465398  NM_001277323         NPIPA3
4   chr16   14701808       15465398  NM_001277324         NPIPA2
6   chr16   14701808       15465398  NM_001277325         NPIPA5
7   chr16   14701808       15465398  NM_001285445         PDXDC1
12  chr16   14701808       15465398  NM_001301064           RRN3
14  chr16   14701808       15465398     NM_006985         NPIPA1
15  chr16   14701808       15465398     NM_014287          NOMO1
16  chr16   14701808       15465398     NM_016561           BFAR
17  chr16   14701808       15465398     NR_023387        ABCC6P2
18  chr16   14701808       15465398     NR_036140      MIR3179-1
19  chr16   14701808       15465398     NR_036141      MIR3180-1
20  chr16   14701808       15465398     NR_036142      MIR3180-2
21  chr16   14701808       15465398     NR_037466      MIR3180-4
22  chr16   14701808       15465398     NR_103772   LOC100288162
23  chr16   14701808       15465398     NR_106775      MIR6511B1
24  chr16   14701808       15465398     NR_106965      MIR6511B2
25  chr16   14701808       15465398     NR_106970      MIR6511A3
26  chr16   14701808       15465398     NR_107060      MIR6770-2
27  chr16   14701808       15465398     NR_123721  PKD1P6-NPIPP1
29  chr16   14701808       15465398     NR_125434   LOC100505915
30  chr16   14701808       15465398     NR_128713      MIR3670-4
31  chr16   14701808       15465398     NR_133651        PLA2G10
32  chr16   68606559       68863000  NM_001305204          ZFP90
33  chr16   68606559       68863000  NM_001317184           CDH1
34  chr16   68606559       68863000  NM_001317195           CDH3
35  chr16   68606559       68863000     NR_106988      MIR7641-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67909980       68014483  NM_001127384        CTNNA3
2   chr11    4185092        5620582     NM_000184          HBG2
3   chr11    4185092        5620582     NM_000518           HBB
4   chr11    4185092        5620582     NM_000519           HBD
5   chr11    4185092        5620582     NM_000559          HBG1
6   chr11    4185092        5620582  NM_001001916        OR52J3
7   chr11    4185092        5620582  NM_001003819  TRIM6-TRIM34
8   chr11    4185092        5620582  NM_001004137        OR52M1
9   chr11    4185092        5620582  NM_001004748        OR51A2
10  chr11    4185092        5620582  NM_001004749        OR51A7
11  chr11    4185092        5620582  NM_001004750        OR51B6
12  chr11    4185092        5620582  NM_001004751        OR51D1
13  chr11    4185092        5620582  NM_001004752        OR51F1
14  chr11    4185092        5620582  NM_001004753        OR51F2
15  chr11    4185092        5620582  NM_001004754        OR51I2
16  chr11    4185092        5620582  NM_001004755        OR51L1
17  chr11    4185092        5620582  NM_001004756        OR51M1
18  chr11    4185092        5620582  NM_001004757        OR51Q1
19  chr11    4185092        5620582  NM_001004758        OR51S1
20  chr11    4185092        5620582  NM_001004759        OR51T1
21  chr11    4185092        5620582  NM_001004760        OR51V1
22  chr11    4185092        5620582  NM_001005160        OR52A5
23  chr11    4185092        5620582  NM_001005161        OR52B4
24  chr11    4185092        5620582  NM_001005162        OR52B6
25  chr11    4185092        5620582  NM_001005163        OR52D1
26  chr11    4185092        5620582  NM_001005164        OR52E2
27  chr11    4185092        5620582  NM_001005169        OR52I1
28  chr11    4185092        5620582  NM_001005170        OR52I2
29  chr11    4185092        5620582  NM_001005171        OR52K1
30  chr11    4185092        5620582  NM_001005172        OR52K2
..    ...        ...            ...           ...           ...
39  chr11    4185092        5620582     NM_003141        TRIM21
40  chr11    4185092        5620582     NM_005330          HBE1
41  chr11    4185092        5620582     NM_012375        OR52A1
42  chr11    4185092        5620582     NM_017481        UBQLN3
43  chr11    4185092        5620582     NM_018073        TRIM68
44  chr11    4185092        5620582     NM_021801         MMP26
45  chr11    4185092        5620582     NM_030774        OR51E2
46  chr11    4185092        5620582     NM_033179        OR51B4
47  chr11    4185092        5620582     NM_033180        OR51B2
49  chr11    4185092        5620582     NM_144663      C11orf40
50  chr11    4185092        5620582     NM_145053        UBQLNL
51  chr11    4185092        5620582     NM_152430        OR51E1
52  chr11    4185092        5620582     NR_001589         HBBP1
54  chr11    4185092        5620582     NR_047550  LOC100506082
55  chr11    4185092        5620582     NR_121648         BGLT3
56  chr11    4185092        5620582     NR_133006        OLFM5P
57  chr14   21739828       21961543  NM_001163380         RAB2B
58  chr14   21739828       21961543  NM_001170629          CHD8
59  chr14   21739828       21961543  NM_001303523          TOX4
60  chr14   21739828       21961543     NM_007192       SUPT16H
61  chr14   21739828       21961543     NM_020366       RPGRIP1
64  chr14   21739828       21961543     NR_002916        SNORD8
65  chr14   21739828       21961543     NR_003029        SNORD9
66  chr14   21744104       21898717  NM_001170629          CHD8
67  chr14   21744104       21898717     NM_007192       SUPT16H
68  chr14   21744104       21898717     NM_020366       RPGRIP1
70  chr14   21744104       21898717     NR_002916        SNORD8
71  chr14   21744104       21898717     NR_003029        SNORD9
72   chr3    7047544        7568105     NM_181874          GRM7
73   chr3    7047544        7568105     NR_046606      GRM7-AS1

[68 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145313718      145465781  NM_001277444         NBPF9
1    chr1  145313718      145465781  NM_001278267        NBPF20
2    chr1  145313718      145465781  NM_001302371        NBPF10
3    chr1  145313718      145465781  NM_001313972         TXNIP
5    chr1  145313718      145465781     NM_032305       POLR3GL
6    chr1  145313718      145465781     NM_145277          HFE2
7    chr1  145313718      145465781     NR_104217       NBPF25P
8    chr1  145313718      145465781     NR_125967  LOC101928979
9   chr12   72613181       72720093     NM_013381         TRHDE
10  chr12   72613181       72720093     NR_026836     TRHDE-AS1
12  chr20   14700807       14819433     NM_080676       MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21823635       21925828  NM_001170629          CHD8
1   chr14   21823635       21925828     NM_007192       SUPT16H
3   chr14   21823635       21925828     NR_002916        SNORD8
4   chr14   21823635       21925828     NR_003029        SNORD9
5   chr16   16437984       16556100  NM_001282511        NPIPA8
6   chr16   16437984       16556100     NR_036447        PKD1P1
7   chr16   16437984       16556100     NR_106971     MIR6511A4
8   chr18   63466323       63589252  NM_001317214          CDH7
11   chr2   51725353       51841447     NR_135237     LOC730100
12   chr2  186435228      186704531     NM_173651         FSIP2
13   chr2  186435228      186704531     NR_110214  LOC101927196
16   chr2  186435228      186704531     NR_144453     FSIP2-AS1
18   chr2  186514033      186807271     NM_173651         FSIP2
19   chr2  186514033      186807271     NR_110214  LOC101927196
22   chr2  186514033      186807271     NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18383357       18500668  NM_001282511        NPIPA8
1   chr16   18383357       18500668     NR_036142     MIR3180-2
2   chr16   18383357       18500668     NR_036144     MIR3180-3
3   chr16   18383357       18500668     NR_037442     MIR3670-1
4   chr16   18383357       18500668     NR_103772  LOC100288162
5   chr16   18383357       18500668     NR_106971     MIR6511A4
6   chr16   18383357       18500668     NR_107060     MIR6770-2
7   chr18   67778839       67957145  NM_001318520          RTTN
8   chr18   67778839       67957145     NM_004232         SOCS6
9    chr7  110586924      110988122  NM_001099658         LRRN3
10   chr7  110586924      110988122  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28612750       29351981  NM_001130414         APBA2
1   chr15   28612750       29351981  NM_001282468       GOLGA8M
2   chr15   28612750       29351981     NR_026589       WHAMMP2
3   chr15   28612750       29351981     NR_033351       GOLGA8F
5   chr15   28612750       29351981     NR_033353       GOLGA8G
7   chr15   28612750       29351981     NR_036443       HERC2P9
8   chr15   28612750       29351981     NR_036475  LOC100289656
9   chr15   28612750       29351981     NR_037599     PDCD6IPP2
10  chr15   28612750       29351981     NR_039734     MIR4509-3
12  chr15   28612750       29351981     NR_047567     GOLGA6L7P
13   chr2   36335966       36623683     NM_016441         CRIM1
14   chr2   36335966       36623683     NR_037631  LOC100288911
15   chr7  110798762      110923227  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21925255       22029327  NM_001163380         RAB2B
1   chr14   21925255       22029327  NM_001303523          TOX4
2   chr14   21925255       22029327     NM_019852        METTL3
4   chr14   21925255       22029327     NR_111966         SALL2
6   chr15   58879869       59135679  NM_001040450        FAM63B
8   chr15   58879869       59135679     NM_001110        ADAM10
9   chr15   58879869       59135679     NR_073415     HSP90AB4P
10  chr15   58879869       59135679     NR_135474  LOC101928725
11  chr15  100124620      100225664  NM_001130928         MEF2A
13  chr20   41012513       42218593  NM_001199264          SGK2
14  chr20   41012513       42218593     NM_015478       L3MBTL1
17  chr20   41012513       42218593     NM_133170         PTPRT
19  chr20   41012513       42218593     NR_034009         SRSF6
20  chr20   41012513       42218593     NR_110004  LOC101927159
21  chr22   32352848       32464527     NM_000343        SLC5A1
23  chr22   32352848       32464527     NM_003405         YWHAH
24   chr5  106107019      106348088     NR_104671  LOC102467213
25   chr7  145924555      146055186     NM_014141       CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   19942415       20111961  NM_001145442         POTEM
1   chr14   19942415       20111961     NR_110505  LOC100508046
2   chr14   21779552       21930193  NM_001163380         RAB2B
3   chr14   21779552       21930193  NM_001170629          CHD8
4   chr14   21779552       21930193     NM_007192       SUPT16H
5   chr14   21779552       21930193     NM_020366       RPGRIP1
8   chr14   21779552       21930193     NR_002916        SNORD8
9   chr14   21779552       21930193     NR_003029        SNORD9
10   chr2  110184801      110329375  NM_001099289        SH3RF3
11   chr2  110184801      110329375  NM_001321504        SEPT10
13  chr22   20067420       20339758  NM_001190326         DGCR8
14  chr22   20067420       20339758  NM_001243537       CCDC188
15  chr22   20067420       20339758  NM_001278639        RANBP1
18  chr22   20067420       20339758     NM_013373        ZDHHC8
19  chr22   20067420       20339758     NM_022727        TRMT2A
20  chr22   20067420       20339758     NM_023004         RTN4R
21  chr22   20067420       20339758     NM_033257        DGCR6L
22  chr22   20067420       20339758     NR_026919     LINC00896
23  chr22   20067420       20339758     NR_031618       MIR1286
24  chr22   20067420       20339758     NR_031706       MIR1306
25  chr22   20067420       20339758     NR_037412       MIR3618
26  chr22   20067420       20339758     NR_038460     LOC284865
27  chr22   20067420       20339758     NR_106874       MIR6816
28  chr22   20067420       20339758     NR_136560       FAM230A
29  chr22   20067420       20339758     NR_136572  LOC101927859
30   chr4   69255710       69363911     NM_014058     TMPRSS11E
31   chr8    8180364        8338328  NM_001080826         PRAG1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   21868408       22600065  NM_001001912          OR4E2
1   chr14   21868408       22600065  NM_001005465         OR10G3
2   chr14   21868408       22600065  NM_001005466         OR10G2
3   chr14   21868408       22600065  NM_001163380          RAB2B
4   chr14   21868408       22600065  NM_001170629           CHD8
5   chr14   21868408       22600065  NM_001303523           TOX4
6   chr14   21868408       22600065  NM_001317107          OR4E1
7   chr14   21868408       22600065     NM_019852         METTL3
10  chr14   21868408       22600065     NR_111966          SALL2
12  chr16   14852464       15428143  NM_001270767          NTAN1
13  chr16   14852464       15428143  NM_001277323         NPIPA3
14  chr16   14852464       15428143  NM_001277324         NPIPA2
15  chr16   14852464       15428143  NM_001285445         PDXDC1
20  chr16   14852464       15428143  NM_001301064           RRN3
22  chr16   14852464       15428143     NM_006985         NPIPA1
23  chr16   14852464       15428143     NM_014287          NOMO1
24  chr16   14852464       15428143     NR_023387        ABCC6P2
25  chr16   14852464       15428143     NR_036140      MIR3179-1
26  chr16   14852464       15428143     NR_036141      MIR3180-1
27  chr16   14852464       15428143     NR_036142      MIR3180-2
28  chr16   14852464       15428143     NR_037466      MIR3180-4
29  chr16   14852464       15428143     NR_103772   LOC100288162
30  chr16   14852464       15428143     NR_106775      MIR6511B1
31  chr16   14852464       15428143     NR_106965      MIR6511B2
32  chr16   14852464       15428143     NR_106970      MIR6511A3
33  chr16   14852464       15428143     NR_107060      MIR6770-2
34  chr16   14852464       15428143     NR_123721  PKD1P6-NPIPP1
36  chr16   14852464       15428143     NR_125434   LOC100505915
37  chr16   14852464       15428143     NR_128713      MIR3670-4
38   chr3    3797686        3947991  NM_001324189          LRRN1
39   chr7      63001         527955  NM_001195127   WI2-2373I1.2
40   chr7      63001         527955     NM_020223         FAM20C
41   chr7      63001         527955     NR_033960      LOC442497
42   chr7      63001         527955     NR_108065   LOC100507642
43   chr7      63001         527955     NR_134324   LOC105375115
44   chr7      63001         527955     NR_134325   LOC102723672,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143660093      143937487  NM_001123068       PPIAL4G
1    chr1  143660093      143937487  NM_001287385        FAM72C
2    chr1  143660093      143937487  NM_001345942        FAM72D
6    chr1  143660093      143937487     NR_104014     LINC01138
7    chr1  143660093      143937487     NR_106967       MIR6077
8    chr1  143660093      143937487     NR_111930  LOC100132057
10  chr10   67992228       68306339  NM_001127384        CTNNA3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21875470       21988660  NM_001163380         RAB2B
1   chr14   21875470       21988660  NM_001170629          CHD8
2   chr14   21875470       21988660  NM_001303523          TOX4
3   chr14   21875470       21988660     NM_019852        METTL3
6    chr6   65506010       65619590  NM_001142800           EYS
7    chr9  137569612      137780670     NM_000093        COL5A1
8    chr9  137569612      137780670     NM_004108          FCN2
9    chr9  137569612      137780670     NR_037460      MIR3689A
10   chr9  137569612      137780670     NR_037469      MIR3689B
11   chr9  137569612      137780670     NR_039691      MIR3689C
12   chr9  137569612      137780670     NR_039693     MIR3689D1
13   chr9  137569612      137780670     NR_039694     MIR3689D2
14   chr9  137569612      137780670     NR_039695      MIR3689E
15   chr9  137569612      137780670     NR_039696      MIR3689F
16   chr9  137569612      137780670     NR_103451  LOC101448202,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   56532016       56813004  NM_001142770     PCDH15
3   chr14   21865080       22064554  NM_001005465     OR10G3
4   chr14   21865080       22064554  NM_001163380      RAB2B
5   chr14   21865080       22064554  NM_001170629       CHD8
6   chr14   21865080       22064554  NM_001303523       TOX4
7   chr14   21865080       22064554     NM_019852     METTL3
10  chr14   21865080       22064554     NR_002916     SNORD8
11  chr14   21865080       22064554     NR_111966      SALL2
13   chr2  236673082      236987193  NM_001244888      AGAP1
15  chr20   14713266       14838341     NM_080676    MACROD2
16   chr9    2485877        2660338     NM_003383      VLDLR
17   chr9    2485877        2660338     NR_015375  VLDLR-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28579353       29997474  NM_001130414         APBA2
1   chr15   28579353       29997474  NM_001282468       GOLGA8M
2   chr15   28579353       29997474  NM_001301025          TJP1
5   chr15   28579353       29997474     NM_015307      FAM189A1
6   chr15   28579353       29997474     NM_138704        NSMCE3
7   chr15   28579353       29997474     NR_026589       WHAMMP2
8   chr15   28579353       29997474     NR_033351       GOLGA8F
10  chr15   28579353       29997474     NR_033353       GOLGA8G
12  chr15   28579353       29997474     NR_036443       HERC2P9
13  chr15   28579353       29997474     NR_036475  LOC100289656
14  chr15   28579353       29997474     NR_037599     PDCD6IPP2
15  chr15   28579353       29997474     NR_039734     MIR4509-3
17  chr15   28579353       29997474     NR_047567     GOLGA6L7P
18  chr15   28579353       29997474     NR_135221  LOC100130111
19  chr15   29788323       29976759     NM_015307      FAM189A1
20  chr15   29788323       29976759     NR_135221  LOC100130111,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21808827       22028772  NM_001163380      RAB2B
1   chr14   21808827       22028772  NM_001170629       CHD8
2   chr14   21808827       22028772  NM_001303523       TOX4
3   chr14   21808827       22028772     NM_007192    SUPT16H
4   chr14   21808827       22028772     NM_019852     METTL3
5   chr14   21808827       22028772     NM_020366    RPGRIP1
8   chr14   21808827       22028772     NR_002916     SNORD8
9   chr14   21808827       22028772     NR_003029     SNORD9
10  chr14   21808827       22028772     NR_111966      SALL2
12   chr2   51170089       51271356  NM_001330079      NRXN1
15   chr2   51170089       51271356     NR_135237  LOC730100
16   chr7  110633383      110737973  NM_001099658      LRRN3
17   chr7  110633383      110737973  NM_001244606     IMMP2L
19   chr9   80063661       80229392     NM_004297      GNA14
20   chr9   80063661       80229392     NR_121184  GNA14-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  176976630      177174637  NM_001286164         ASTN1
2    chr1  176976630      177174637     NM_021165        BRINP2
4    chr1  176976630      177174637     NR_030163        MIR488
5   chr10   19633240       20102809  NM_001142308        MALRD1
6   chr10   19633240       20102809     NR_120646  LOC101928834
7    chr2  186504032      186717684     NM_173651         FSIP2
8    chr2  186504032      186717684     NR_110214  LOC101927196
11   chr2  186504032      186717684     NR_144453     FSIP2-AS1
13  chr22   17218699       17330826     NM_175878          XKR3
14  chr22   17218699       17330826     NR_003607       HSFY1P1
15  chr22   17218699       17330826     NR_134584  LOC101929350
16   chr3  162923756      163029675     NR_033945     LINC01192
17   chr4   47992638       48917863     NM_000087         CNGA1
18   chr4   47992638       48917863  NM_001014446        OCIAD2
19   chr4   47992638       48917863  NM_001079839        OCIAD1
22   chr4   47992638       48917863     NM_003215           TEC
23   chr4   47992638       48917863     NM_003328           TXK
24   chr4   47992638       48917863     NM_015030          FRYL
25   chr4   47992638       48917863     NM_020846        SLAIN2
26   chr4   47992638       48917863     NM_152679       SLC10A4
27   chr4   47992638       48917863     NM_175619          ZAR1
28   chr4   47992638       48917863     NM_207330        NIPAL1
29   chr4   47992638       48917863     NR_125879  LOC101927157
30   chr4   94064621       94216037     NM_001510         GRID2
31   chr7  110632352      110871414  NM_001099658         LRRN3
32   chr7  110632352      110871414  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12830023       12953365  NM_001009611       PRAMEF4
1    chr1   12830023       12953365  NM_001013631      HNRNPCL1
2    chr1   12830023       12953365  NM_001080830      PRAMEF12
3    chr1   12830023       12953365  NM_001146181      HNRNPCL3
4    chr1   12830023       12953365  NM_001146344      PRAMEF11
5    chr1   12830023       12953365  NM_001294139       PRAMEF1
6    chr1   12830023       12953365  NM_001302551      HNRNPCL4
8    chr1   12830023       12953365     NM_023014       PRAMEF2
9   chr14   21777065       22236847  NM_001001912         OR4E2
10  chr14   21777065       22236847  NM_001005465        OR10G3
11  chr14   21777065       22236847  NM_001005466        OR10G2
12  chr14   21777065       22236847  NM_001163380         RAB2B
13  chr14   21777065       22236847  NM_001170629          CHD8
14  chr14   21777065       22236847  NM_001303523          TOX4
15  chr14   21777065       22236847  NM_001317107         OR4E1
16  chr14   21777065       22236847     NM_007192       SUPT16H
17  chr14   21777065       22236847     NM_019852        METTL3
18  chr14   21777065       22236847     NM_020366       RPGRIP1
21  chr14   21777065       22236847     NR_002916        SNORD8
22  chr14   21777065       22236847     NR_003029        SNORD9
23  chr14   21777065       22236847     NR_111966         SALL2
25  chr15   28703006       28825857     NR_033351       GOLGA8F
26  chr15   28703006       28825857     NR_033353       GOLGA8G
27  chr15   28703006       28825857     NR_039734     MIR4509-3
28  chr16   83059247       84401027  NM_001080442       SLC38A8
29  chr16   83059247       84401027  NM_001145400         ADAD2
30  chr16   83059247       84401027  NM_001146051         HSDL1
31  chr16   83059247       84401027  NM_001220488         CDH13
33  chr16   83059247       84401027  NM_001243156         TAF1C
34  chr16   83059247       84401027  NM_001282466         WFDC1
35  chr16   83059247       84401027  NM_001318756        DNAAF1
36  chr16   83059247       84401027     NM_001537         HSBP1
37  chr16   83059247       84401027     NM_003791        MBTPS1
38  chr16   83059247       84401027     NM_012213         MLYCD
39  chr16   83059247       84401027     NM_019065        NECAB2
40  chr16   83059247       84401027     NM_172347         KCNG4
42  chr16   83059247       84401027     NM_182981        OSGIN1
43  chr16   83059247       84401027     NR_036147       MIR3182
44  chr16   83059247       84401027     NR_120308  LOC102724163
45  chr20   41080778       41186372     NM_133170         PTPRT
46   chr8    6779063        6916707  NM_001302265        DEFA1B
47   chr8    6779063        6916707     NM_001925         DEFA4
48   chr8    6779063        6916707     NM_001926         DEFA6
49   chr8    6779063        6916707     NM_004084         DEFA1
51   chr8    6779063        6916707     NM_005217         DEFA3
52   chr8    6779063        6916707     NM_021010         DEFA5
53   chr8    6779063        6916707     NR_029386       DEFA10P
54   chr8    6779063        6916707     NR_036686        DEFT1P
56   chr8    6779063        6916707     NR_073407        DEFA8P
57   chr8    6779063        6916707     NR_073408        DEFA9P
58   chr8    6779063        6916707     NR_073421       DEFA11P,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  162808346      163097255  NM_001102445         RGS4
4    chr1  162808346      163097255     NM_178550      CCDC190
5   chr14   21770435       22002518  NM_001163380        RAB2B
6   chr14   21770435       22002518  NM_001170629         CHD8
7   chr14   21770435       22002518  NM_001303523         TOX4
8   chr14   21770435       22002518     NM_007192      SUPT16H
9   chr14   21770435       22002518     NM_019852       METTL3
10  chr14   21770435       22002518     NM_020366      RPGRIP1
13  chr14   21770435       22002518     NR_002916       SNORD8
14  chr14   21770435       22002518     NR_003029       SNORD9
15  chr14   21770435       22002518     NR_111966        SALL2
17  chr17    1161439        1317378  NM_001164405       BHLHA9
18  chr17    1161439        1317378     NM_006761        YWHAE
19  chr17    1161439        1317378     NM_172367        TUSC5
20  chr20   14642087       14872979     NM_080676      MACROD2
21  chr20   14642087       14872979     NR_037841  MACROD2-AS1
22   chr4   94112398       94216849     NM_001510        GRID2
23   chr7   80185232       80359956     NM_000072         CD36,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143715797      143815995  NM_001123068       PPIAL4G
1  chr1  143715797      143815995     NR_104014     LINC01138
2  chr1  143715797      143815995     NR_111930  LOC100132057,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   72690304       72803494     NM_013381      TRHDE
1   chr14   21771502       22038571  NM_001005465     OR10G3
2   chr14   21771502       22038571  NM_001163380      RAB2B
3   chr14   21771502       22038571  NM_001170629       CHD8
4   chr14   21771502       22038571  NM_001303523       TOX4
5   chr14   21771502       22038571     NM_007192    SUPT16H
6   chr14   21771502       22038571     NM_019852     METTL3
7   chr14   21771502       22038571     NM_020366    RPGRIP1
10  chr14   21771502       22038571     NR_002916     SNORD8
11  chr14   21771502       22038571     NR_003029     SNORD9
12  chr14   21771502       22038571     NR_111966      SALL2
14   chr8  111971837      112278769     NR_125416  LINC01608
16   chr8  111971837      112278769     NR_125418  LINC01609,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   42186128       42514295  NM_001346175         LRFN5
1   chr16   18260652       18719606  NM_001004060         NOMO2
2   chr16   18260652       18719606  NM_001282511        NPIPA8
3   chr16   18260652       18719606     NR_003569       ABCC6P1
4   chr16   18260652       18719606     NR_036140     MIR3179-1
5   chr16   18260652       18719606     NR_036142     MIR3180-2
6   chr16   18260652       18719606     NR_036144     MIR3180-3
7   chr16   18260652       18719606     NR_037442     MIR3670-1
8   chr16   18260652       18719606     NR_103772  LOC100288162
9   chr16   18260652       18719606     NR_106971     MIR6511A4
10  chr16   18260652       18719606     NR_107060     MIR6770-2
11   chr2   24997464       25112274  NM_001013663        PTRHD1
12   chr2   24997464       25112274  NM_001320613         ADCY3
13   chr2   24997464       25112274  NM_001322101         CENPO
14   chr2   34638422       35149120     NR_126404     LINC01320
15   chr9  108448471      108644526     NM_018112       TMEM38B,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81437821       81583690  NM_001278495      NUTM2B
1   chr10   81437821       81583690     NR_027512     BEND3P3
2   chr10   81437821       81583690     NR_120611  NUTM2B-AS1
5   chr14   21818979       22610135  NM_001001912       OR4E2
6   chr14   21818979       22610135  NM_001005465      OR10G3
7   chr14   21818979       22610135  NM_001005466      OR10G2
8   chr14   21818979       22610135  NM_001163380       RAB2B
9   chr14   21818979       22610135  NM_001170629        CHD8
10  chr14   21818979       22610135  NM_001303523        TOX4
11  chr14   21818979       22610135  NM_001317107       OR4E1
12  chr14   21818979       22610135     NM_007192     SUPT16H
13  chr14   21818979       22610135     NM_019852      METTL3
14  chr14   21818979       22610135     NM_020366     RPGRIP1
17  chr14   21818979       22610135     NR_002916      SNORD8
18  chr14   21818979       22610135     NR_003029      SNORD9
19  chr14   21818979       22610135     NR_111966       SALL2
21  chr16   68584398       68764126  NM_001305204       ZFP90
23  chr16   68584398       68764126  NM_001317195        CDH3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   71686218       73534108  NM_001071775       MZT1
1   chr13   71686218       73534108  NM_001286746       BORA
3   chr13   71686218       73534108  NM_001322349       DIS3
4   chr13   71686218       73534108     NM_006346      PIBF1
5   chr13   71686218       73534108     NM_080759      DACH1
6   chr13   71686218       73534108     NR_047699  LINC00348
7   chr14   21809699       23350490  NM_001001912      OR4E2
8   chr14   21809699       23350490  NM_001005465     OR10G3
9   chr14   21809699       23350490  NM_001005466     OR10G2
10  chr14   21809699       23350490  NM_001126105     SLC7A7
12  chr14   21809699       23350490  NM_001163380      RAB2B
13  chr14   21809699       23350490  NM_001170629       CHD8
14  chr14   21809699       23350490  NM_001303523       TOX4
15  chr14   21809699       23350490  NM_001317107      OR4E1
16  chr14   21809699       23350490  NM_001318870     MRPL52
17  chr14   21809699       23350490  NM_001329226      LRP10
18  chr14   21809699       23350490     NM_001344       DAD1
19  chr14   21809699       23350490     NM_004995      MMP14
20  chr14   21809699       23350490     NM_005015      OXA1L
21  chr14   21809699       23350490     NM_007192    SUPT16H
22  chr14   21809699       23350490     NM_019852     METTL3
23  chr14   21809699       23350490     NM_020366    RPGRIP1
25  chr14   21809699       23350490     NM_022060      ABHD4
27  chr14   21809699       23350490     NR_002916     SNORD8
28  chr14   21809699       23350490     NR_003029     SNORD9
30  chr14   21809699       23350490     NR_111966      SALL2
32  chr17    5584717        5712332     NR_040000  LOC339166,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   40666521       40809252  NM_001258419        LRRC4C
1    chr2  186129434      186835148     NM_173651         FSIP2
2    chr2  186129434      186835148     NR_110214  LOC101927196
5    chr2  186129434      186835148     NR_144453     FSIP2-AS1
7   chr20   14792692       14989350     NM_080676       MACROD2
8   chr20   14792692       14989350     NR_037841   MACROD2-AS1
10   chr4   69287731       69445030     NM_001077       UGT2B17
11   chr4   69287731       69445030     NM_014058     TMPRSS11E
12   chr9   67122509       67321762     NR_002817        AQP7P1
13   chr9   67122509       67321762     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   26960006       27088795     NM_002515       NOVA1
2   chr15   82745593       82987225  NM_001164465   GOLGA6L10
3   chr15   82745593       82987225  NM_001291420    GOLGA6L9
5   chr15   82745593       82987225     NR_026811   GOLGA2P10
7   chr15   82745593       82987225     NR_045529   ADAMTS7P1
8   chr15   82745593       82987225     NR_102747   LOC727751
9   chr15   82745593       82987225     NR_111943       RPS17
11  chr15   82745593       82987225     NR_111962  GOLGA6L17P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145344085      145467012  NM_001277444         NBPF9
1    chr1  145344085      145467012  NM_001278267        NBPF20
2    chr1  145344085      145467012  NM_001302371        NBPF10
3    chr1  145344085      145467012  NM_001313972         TXNIP
5    chr1  145344085      145467012     NM_032305       POLR3GL
6    chr1  145344085      145467012     NM_145277          HFE2
7    chr1  145344085      145467012     NR_104217       NBPF25P
8    chr1  145344085      145467012     NR_125967  LOC101928979
9   chr13   63091744       63333597     NR_047029     LINC00448
10  chr14   26984050       27300717     NM_002515         NOVA1
12  chr14   26984050       27300717     NR_110033  LOC101927062
13  chr14   26984050       27300717     NR_110556  LOC102724890
14  chr15   28538957       29856756  NM_001130414         APBA2
15  chr15   28538957       29856756  NM_001282468       GOLGA8M
16  chr15   28538957       29856756     NM_004667         HERC2
17  chr15   28538957       29856756     NM_015307      FAM189A1
18  chr15   28538957       29856756     NM_138704        NSMCE3
19  chr15   28538957       29856756     NR_026589       WHAMMP2
20  chr15   28538957       29856756     NR_033351       GOLGA8F
22  chr15   28538957       29856756     NR_033353       GOLGA8G
24  chr15   28538957       29856756     NR_036443       HERC2P9
25  chr15   28538957       29856756     NR_036475  LOC100289656
26  chr15   28538957       29856756     NR_037599     PDCD6IPP2
27  chr15   28538957       29856756     NR_039734     MIR4509-3
29  chr15   28538957       29856756     NR_047567     GOLGA6L7P
30  chr19   21458655       21583994  NM_001297560        ZNF708
33  chr19   21458655       21583994     NM_145326        ZNF493
35  chr19   21458655       21583994     NR_027130        ZNF738
36   chr9   39034425       39162263     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21699964       21931743  NM_001163380      RAB2B
1   chr14   21699964       21931743  NM_001170629       CHD8
2   chr14   21699964       21931743     NM_007192    SUPT16H
3   chr14   21699964       21931743     NM_020366    RPGRIP1
5   chr14   21699964       21931743     NM_031314     HNRNPC
7   chr14   21699964       21931743     NR_002916     SNORD8
8   chr14   21699964       21931743     NR_003029     SNORD9
9    chr4   69176267       69375520  NM_001031732     YTHDC1
10   chr4   69176267       69375520     NM_014058  TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21838744       21952196  NM_001163380     RAB2B
1   chr14   21838744       21952196  NM_001170629      CHD8
2   chr14   21838744       21952196  NM_001303523      TOX4
3   chr14   21838744       21952196     NM_007192   SUPT16H
6   chr14   21838744       21952196     NR_002916    SNORD8
7   chr14   21838744       21952196     NR_003029    SNORD9
8   chr16   12316042       12808828  NM_001099455    CPPED1
9   chr16   12316042       12808828     NM_032167     SNX29
10   chr4      65804         698278     NM_000283     PDE6B
11   chr4      65804         698278  NM_001039127    ZNF718
12   chr4      65804         698278  NM_001137608    ZNF732
14   chr4      65804         698278  NM_001286052    ZNF595
15   chr4      65804         698278  NM_001289053      PIGG
18   chr4      65804         698278  NM_001294341     MFSD7
19   chr4      65804         698278     NM_002477      MYL5
20   chr4      65804         698278     NM_003441    ZNF141
21   chr4      65804         698278     NM_007100     ATP5I
22   chr4      65804         698278     NM_133474    ZNF721
23   chr4      65804         698278     NR_002451   ABCA11P
24   chr4      65804         698278     NR_027481   ZNF876P
25   chr4      65804         698278     NR_030297    MIR571,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21759002       22116356  NM_001005465        OR10G3
1   chr14   21759002       22116356  NM_001005466        OR10G2
2   chr14   21759002       22116356  NM_001163380         RAB2B
3   chr14   21759002       22116356  NM_001170629          CHD8
4   chr14   21759002       22116356  NM_001303523          TOX4
5   chr14   21759002       22116356     NM_007192       SUPT16H
6   chr14   21759002       22116356     NM_019852        METTL3
7   chr14   21759002       22116356     NM_020366       RPGRIP1
10  chr14   21759002       22116356     NR_002916        SNORD8
11  chr14   21759002       22116356     NR_003029        SNORD9
12  chr14   21759002       22116356     NR_111966         SALL2
14  chr14   81668746       81779374  NM_001256430         STON2
15  chr14   81668746       81779374  NM_001278940        GTF2A1
18  chr14   81668746       81779374     NR_003021       SNORA79
19  chr14   81668746       81779374     NR_135252  LOC101928504
20   chr2   50988787       51117823  NM_001330082         NRXN1
21   chr9   28465361       28701726  NM_001258282        LINGO2
23   chr9  119712886      119936778     NM_014010         ASTN2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   19681726       19905825     NM_006001        TUBA3C
1   chr13   19681726       19905825     NR_027248     ANKRD26P3
2   chr13   19681726       19905825     NR_126054  LOC101928697
3   chr13   67258606       67369030     NM_020403         PCDH9
4   chr14   21850541       22016441  NM_001163380         RAB2B
5   chr14   21850541       22016441  NM_001170629          CHD8
6   chr14   21850541       22016441  NM_001303523          TOX4
7   chr14   21850541       22016441     NM_007192       SUPT16H
8   chr14   21850541       22016441     NM_019852        METTL3
11  chr14   21850541       22016441     NR_002916        SNORD8
12  chr14   21850541       22016441     NR_003029        SNORD9
13  chr14   21850541       22016441     NR_111966         SALL2
15  chr14   40920911       42513541  NM_001346175         LRFN5
16  chr14   40920911       42513541     NR_109757     LOC644919
18  chr16   29534714       29648238     NR_049833     MIR3680-2
19  chr16   29534714       29648238     NR_135305        SMG1P2
21  chr21   40103829       40214101  NM_001256295          ETS2
23  chr21   40103829       40214101     NR_027065     LINC00114
26   chr4   81911335       82052448     NM_001201          BMP3
27   chr4   81911335       82052448  NM_001282483         PRKG2
29   chr4  169219154      169320884  NM_001012967        DDX60L
31   chr4  169219154      169320884     NM_017631         DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   71701981       72138478     NM_080759         DACH1
1   chr13   71701981       72138478     NR_047699     LINC00348
2   chr14   21755745       21883411  NM_001170629          CHD8
3   chr14   21755745       21883411     NM_007192       SUPT16H
4   chr14   21755745       21883411     NM_020366       RPGRIP1
6   chr14   21755745       21883411     NR_002916        SNORD8
7   chr14   21755745       21883411     NR_003029        SNORD9
8    chr2  234336896      234758048     NM_000463        UGT1A1
9    chr2  234336896      234758048  NM_001001394        DNAJB3
10   chr2  234336896      234758048     NM_001072        UGT1A6
11   chr2  234336896      234758048  NM_001282962         HJURP
12   chr2  234336896      234758048  NM_001287395        MROH2A
13   chr2  234336896      234758048     NM_003648          DGKD
14   chr2  234336896      234758048     NM_007120        UGT1A4
15   chr2  234336896      234758048     NM_018218         USP40
16   chr2  234336896      234758048     NM_019075       UGT1A10
17   chr2  234336896      234758048     NM_019076        UGT1A8
18   chr2  234336896      234758048     NM_019077        UGT1A7
19   chr2  234336896      234758048     NM_019078        UGT1A5
20   chr2  234336896      234758048     NM_019093        UGT1A3
21   chr2  234336896      234758048     NM_021027        UGT1A9
24   chr2  234336896      234758048     NR_037694  LOC100286922
25  chr22   20091943       20621407  NM_001190326         DGCR8
26  chr22   20091943       20621407  NM_001242313      TMEM191B
27  chr22   20091943       20621407  NM_001243537       CCDC188
28  chr22   20091943       20621407  NM_001278639        RANBP1
31  chr22   20091943       20621407     NM_013373        ZDHHC8
32  chr22   20091943       20621407     NM_015672        RIMBP3
33  chr22   20091943       20621407     NM_022727        TRMT2A
34  chr22   20091943       20621407     NM_023004         RTN4R
35  chr22   20091943       20621407     NM_033257        DGCR6L
36  chr22   20091943       20621407     NR_003563       PI4KAP1
37  chr22   20091943       20621407     NR_026919     LINC00896
38  chr22   20091943       20621407     NR_031618       MIR1286
39  chr22   20091943       20621407     NR_038460     LOC284865
40  chr22   20091943       20621407     NR_106874       MIR6816
41  chr22   20091943       20621407     NR_136560       FAM230A
42  chr22   20091943       20621407     NR_136572  LOC101927859
43   chr4   71325286       71462214  NM_001145006          MUC7
45   chr4   71325286       71462214  NM_001286731          AMTN
46   chr4   71325286       71462214     NM_016519          AMBN
48   chr5  119979292      120173187  NM_001300783         PRR16,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   30315453       30421146  NM_001282472    GOLGA8J
1   chr15   30315453       30421146     NR_026859     ULK4P3
2   chr22   19052330       19401172  NM_001184781      DGCR2
3   chr22   19052330       19401172  NM_001256534    SLC25A1
4   chr22   19052330       19401172     NM_001835     CLTCL1
5   chr22   19052330       19401172     NM_003325       HIRA
6   chr22   19052330       19401172     NM_005315       GSC2
8   chr22   19052330       19401172     NM_022719     DGCR14
9   chr22   19052330       19401172     NM_053006      TSSK2
10  chr22   19052330       19401172     NR_103767  LINC01311
11   chr4  169225480      169801159  NM_001012967     DDX60L
12   chr4  169225480      169801159  NM_001166108      PALLD
16   chr4  169225480      169801159     NM_017631      DDX60
17   chr9   28438744       28709695  NM_001258282     LINGO2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21736297       22167189  NM_001001912     OR4E2
1   chr14   21736297       22167189  NM_001005465    OR10G3
2   chr14   21736297       22167189  NM_001005466    OR10G2
3   chr14   21736297       22167189  NM_001163380     RAB2B
4   chr14   21736297       22167189  NM_001170629      CHD8
5   chr14   21736297       22167189  NM_001303523      TOX4
6   chr14   21736297       22167189  NM_001317107     OR4E1
7   chr14   21736297       22167189     NM_007192   SUPT16H
8   chr14   21736297       22167189     NM_019852    METTL3
9   chr14   21736297       22167189     NM_020366   RPGRIP1
11  chr14   21736297       22167189     NM_031314    HNRNPC
13  chr14   21736297       22167189     NR_002916    SNORD8
14  chr14   21736297       22167189     NR_003029    SNORD9
15  chr14   21736297       22167189     NR_111966     SALL2
17  chr14   26979701       27157843     NM_002515     NOVA1
19  chr15   29734605       29883385     NM_015307  FAM189A1
20   chr2  212980956      213087129  NM_001042599     ERBB4,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   68007116       68122695  NM_001127384       CTNNA3
2    chr2   97272210       97582731  NM_001115016       KANSL3
3    chr2   97272210       97582731  NM_001122646      FAM178B
5    chr2   97272210       97582731  NM_001293083       FER1L5
6    chr2   97272210       97582731  NM_001322354       LMAN2L
7    chr2   97272210       97582731     NM_016466      ANKRD39
9    chr2   97272210       97582731     NM_017623        CNNM3
10   chr2   97272210       97582731     NM_017789       SEMA4C
11   chr2   97272210       97582731     NM_020184        CNNM4
13   chr2   97272210       97582731     NM_144994      ANKRD23
14   chr2   97272210       97582731     NR_036074      MIR3127
16  chr20   14788438       15053882     NM_080676      MACROD2
17  chr20   14788438       15053882     NR_037841  MACROD2-AS1
19  chr22   19895010       20069648     NM_000754         COMT
22  chr22   19895010       20069648  NM_001190326        DGCR8
23  chr22   19895010       20069648  NM_001282512       TXNRD2
24  chr22   19895010       20069648  NM_001283116       TANGO2
27  chr22   19895010       20069648     NM_001670        ARVCF
30  chr22   19895010       20069648     NR_029706       MIR185
31  chr22   19895010       20069648     NR_039918      MIR4761
32   chr3    1145609        1262101  NM_001289081        CNTN6
33   chr4   69208468       69344803  NM_001031732       YTHDC1
34   chr4   69208468       69344803     NM_014058    TMPRSS11E,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   47852103       48008697  NM_001113498         MDGA2
1  chr22   17175525       17576723  NM_001037814          GAB4
2  chr22   17175525       17576723  NM_001289905        IL17RA
3  chr22   17175525       17576723     NM_175878          XKR3
4  chr22   17175525       17576723     NR_003607       HSFY1P1
5  chr22   17175525       17576723     NR_015352         CECR7
6  chr22   17175525       17576723     NR_134584  LOC101929350,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3   60313520       60834081  NM_001320899      FHIT
1  chr3   60313520       60834081     NR_128708  MIR548BB
2  chr8   87973052       88114488     NM_173538     CNBD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143060536      144485802  NM_001123068       PPIAL4G
1    chr1  143060536      144485802  NM_001135789       PPIAL4C
2    chr1  143060536      144485802  NM_001278267        NBPF20
3    chr1  143060536      144485802  NM_001287385        FAM72C
4    chr1  143060536      144485802  NM_001345942        FAM72D
8    chr1  143060536      144485802     NR_024511     LINC00623
10   chr1  143060536      144485802     NR_104014     LINC01138
11   chr1  143060536      144485802     NR_106967       MIR6077
12   chr1  143060536      144485802     NR_110761  LOC102723769
13   chr1  143060536      144485802     NR_111930  LOC100132057
14   chr1  143060536      144485802     NR_111953     LINC00869
16  chr19   33735715       34013438     NM_000285          PEPD
17  chr19   33735715       34013438  NM_001252296         CEBPG
18  chr19   33735715       34013438  NM_001285829         CEBPA
20  chr19   33735715       34013438     NR_026887     CEBPA-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21927589       22259612  NM_001001912      OR4E2
1   chr14   21927589       22259612  NM_001005465     OR10G3
2   chr14   21927589       22259612  NM_001005466     OR10G2
3   chr14   21927589       22259612  NM_001163380      RAB2B
4   chr14   21927589       22259612  NM_001303523       TOX4
5   chr14   21927589       22259612  NM_001317107      OR4E1
6   chr14   21927589       22259612     NM_019852     METTL3
8   chr14   21927589       22259612     NR_111966      SALL2
10   chr4   71416784       72820556     NM_000583         GC
11   chr4   71416784       72820556     NM_000788        DCK
12   chr4   71416784       72820556  NM_001037442      RUFY3
13   chr4   71416784       72820556  NM_001098477      GRSF1
14   chr4   71416784       72820556  NM_001098484     SLC4A4
18   chr4   71416784       72820556  NM_001244766      MOB1B
25   chr4   71416784       72820556     NM_016519       AMBN
26   chr4   71416784       72820556     NM_020368       UTP3
27   chr4   71416784       72820556     NM_031889       ENAM
28   chr4   71416784       72820556     NM_144646     JCHAIN
29   chr4  189253155      189468277     NR_033869  LINC01060,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  104221967      104472955  NM_001008218      AMY1B
2    chr1  104221967      104472955  NM_001008219      AMY1C
4    chr1  104221967      104472955  NM_001008221      AMY1A
8    chr1  233734872      233859693     NM_002245      KCNK1
9    chr1  233734872      233859693     NR_039625    MIR4427
10  chr14   21850251       21989120  NM_001163380      RAB2B
11  chr14   21850251       21989120  NM_001170629       CHD8
12  chr14   21850251       21989120  NM_001303523       TOX4
13  chr14   21850251       21989120     NM_007192    SUPT16H
14  chr14   21850251       21989120     NM_019852     METTL3
17  chr14   21850251       21989120     NR_002916     SNORD8
18  chr14   21850251       21989120     NR_003029     SNORD9
19   chr2   51160923       51449632  NM_001330079      NRXN1
22   chr2   51160923       51449632     NR_135237  LOC730100
23   chr6   20888299       21022784     NM_017774     CDKAL1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21865127       21982131  NM_001163380         RAB2B
1   chr14   21865127       21982131  NM_001170629          CHD8
2   chr14   21865127       21982131  NM_001303523          TOX4
3   chr14   21865127       21982131     NM_019852        METTL3
6   chr14   21865127       21982131     NR_002916        SNORD8
7   chr14   42175246       42289042  NM_001346175         LRFN5
8    chr2   34187033       34429583     NR_126403     LINC01317
9    chr2   34187033       34429583     NR_132381     LINC01318
10   chr2  107673760      108340201     NR_049853      MIR548AU
11   chr5  146435865      146537323  NM_001271899       PPP2R2B
13   chr7     111596         245332     NM_020223        FAM20C
14   chr7     111596         245332     NR_108065  LOC100507642
15   chr7     111596         245332     NR_134324  LOC105375115
16   chr7     111596         245332     NR_134325  LOC102723672,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr15   65436461       65573848     NM_003613         CILP
1   chr15   65436461       65573848     NM_006660         CLPX
2   chr15   65436461       65573848     NM_017851       PARP16
3   chr18   63540273       64009584     NM_004361         CDH7
5   chr20   14664388       14878040     NM_080676      MACROD2
6   chr20   14664388       14878040     NR_037841  MACROD2-AS1
7   chr20   14836233       16584754  NM_001033087      MACROD2
8   chr20   14836233       16584754  NM_001199866       KIF16B
11  chr20   14836233       16584754     NR_037841  MACROD2-AS1
13  chr20   14836233       16584754     NR_130924    LOC613266,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21852765       21988802  NM_001163380     RAB2B
1  chr14   21852765       21988802  NM_001170629      CHD8
2  chr14   21852765       21988802  NM_001303523      TOX4
3  chr14   21852765       21988802     NM_019852    METTL3
6  chr14   21852765       21988802     NR_002916    SNORD8
7  chr14   21852765       21988802     NR_003029    SNORD9
8   chr7   88923354       89398769     NM_181646   ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21843167       23271666  NM_001001912         OR4E2
1   chr14   21843167       23271666  NM_001005465        OR10G3
2   chr14   21843167       23271666  NM_001005466        OR10G2
3   chr14   21843167       23271666  NM_001126105        SLC7A7
5   chr14   21843167       23271666  NM_001163380         RAB2B
6   chr14   21843167       23271666  NM_001170629          CHD8
7   chr14   21843167       23271666  NM_001303523          TOX4
8   chr14   21843167       23271666  NM_001317107         OR4E1
9   chr14   21843167       23271666     NM_001344          DAD1
10  chr14   21843167       23271666     NM_005015         OXA1L
11  chr14   21843167       23271666     NM_007192       SUPT16H
12  chr14   21843167       23271666     NM_019852        METTL3
14  chr14   21843167       23271666     NM_022060         ABHD4
16  chr14   21843167       23271666     NR_002916        SNORD8
17  chr14   21843167       23271666     NR_003029        SNORD9
19  chr14   21843167       23271666     NR_111966         SALL2
21  chr15   28179894       28490671     NM_000275          OCA2
23  chr15   28179894       28490671     NM_004667         HERC2
24   chr2   78003094       78244472     NR_024342        SNAR-H
25   chr2   78003094       78244472     NR_110286  LOC101927926
26   chr2   78003094       78244472     NR_110288  LOC101927967
27  chr21   44844045       44948496  NM_001320643  LOC102724428
28  chr21   44844045       44948496     NM_173354          SIK1
29  chr21   44844045       44948496     NR_026863     LINC00313
30  chr21   44844045       44948496     NR_026960     LINC00319
31  chr21   44844045       44948496     NR_136540  LOC102724354
32   chr8  124992542      125158918  NM_001039112        FER1L6
33   chr8  124992542      125158918     NR_040044    FER1L6-AS1
34   chr8  124992542      125158918     NR_103547    FER1L6-AS2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21889119       22026544  NM_001163380     RAB2B
1  chr14   21889119       22026544  NM_001170629      CHD8
2  chr14   21889119       22026544  NM_001303523      TOX4
3  chr14   21889119       22026544     NM_019852    METTL3
6  chr14   21889119       22026544     NR_111966     SALL2
8   chr4   94040905       94155284     NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27575694       27864413  NM_001034842        PTCHD3
1   chr10   27575694       27864413  NM_001256411         RAB18
2   chr10   27575694       27864413     NR_138082       ARMC4P1
3   chr11   83954064       84091962  NM_001142699          DLG2
7   chr14   21723975       22128193  NM_001005465        OR10G3
8   chr14   21723975       22128193  NM_001005466        OR10G2
9   chr14   21723975       22128193  NM_001163380         RAB2B
10  chr14   21723975       22128193  NM_001170629          CHD8
11  chr14   21723975       22128193  NM_001303523          TOX4
12  chr14   21723975       22128193     NM_007192       SUPT16H
13  chr14   21723975       22128193     NM_019852        METTL3
14  chr14   21723975       22128193     NM_020366       RPGRIP1
16  chr14   21723975       22128193     NM_031314        HNRNPC
18  chr14   21723975       22128193     NR_002916        SNORD8
19  chr14   21723975       22128193     NR_003029        SNORD9
20  chr14   21723975       22128193     NR_111966         SALL2
22   chr4  182017241      182418375     NR_033918     LINC00290
23   chr7   64069672       64335415  NM_001160183        ZNF138
24   chr7   64069672       64335415  NM_001282360        ZNF107
26   chr7   64069672       64335415     NR_077227  LOC100128885
28   chr7   64069672       64335415     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   14787722       15296768  NM_001270767          NTAN1
1   chr16   14787722       15296768  NM_001277323         NPIPA3
3   chr16   14787722       15296768  NM_001277324         NPIPA2
5   chr16   14787722       15296768  NM_001285445         PDXDC1
10  chr16   14787722       15296768  NM_001301064           RRN3
12  chr16   14787722       15296768     NM_006985         NPIPA1
13  chr16   14787722       15296768     NM_014287          NOMO1
14  chr16   14787722       15296768     NR_023387        ABCC6P2
15  chr16   14787722       15296768     NR_036140      MIR3179-1
16  chr16   14787722       15296768     NR_036141      MIR3180-1
17  chr16   14787722       15296768     NR_036142      MIR3180-2
18  chr16   14787722       15296768     NR_037466      MIR3180-4
19  chr16   14787722       15296768     NR_103772   LOC100288162
20  chr16   14787722       15296768     NR_106775      MIR6511B1
21  chr16   14787722       15296768     NR_106965      MIR6511B2
22  chr16   14787722       15296768     NR_106970      MIR6511A3
23  chr16   14787722       15296768     NR_107060      MIR6770-2
24  chr16   14787722       15296768     NR_123721  PKD1P6-NPIPP1
26  chr16   14787722       15296768     NR_125434   LOC100505915
27  chr16   14787722       15296768     NR_128713      MIR3670-4
28  chr16   14787722       15296768     NR_133651        PLA2G10
29   chr6   89400211       89511641  NM_001286428          RNGTT
30   chr7  110723951      110861338  NM_001099658          LRRN3
31   chr7  110723951      110861338  NM_001244606         IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21859944       21985909  NM_001163380     RAB2B
1   chr14   21859944       21985909  NM_001170629      CHD8
2   chr14   21859944       21985909  NM_001303523      TOX4
3   chr14   21859944       21985909     NM_019852    METTL3
6   chr14   21859944       21985909     NR_002916    SNORD8
7   chr14   21859944       21985909     NR_003029    SNORD9
8   chr22   19865167       20001676     NM_000754      COMT
11  chr22   19865167       20001676  NM_001282512    TXNRD2
12  chr22   19865167       20001676     NM_001670     ARVCF
15  chr22   19865167       20001676     NR_039918   MIR4761
16   chr8  100698381      101073740  NM_001286692     RGS22
18   chr8  100698381      101073740     NM_004374     COX6C
19   chr8  100698381      101073740     NM_017890    VPS13B
20   chr8  100698381      101073740     NR_031675  MIR1273A,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   14968346       15463901  NM_001270767          NTAN1
1   chr16   14968346       15463901  NM_001277325         NPIPA5
2   chr16   14968346       15463901  NM_001285445         PDXDC1
7   chr16   14968346       15463901  NM_001301064           RRN3
9   chr16   14968346       15463901     NM_006985         NPIPA1
10  chr16   14968346       15463901     NM_014287          NOMO1
11  chr16   14968346       15463901     NR_036140      MIR3179-1
12  chr16   14968346       15463901     NR_036141      MIR3180-1
13  chr16   14968346       15463901     NR_036142      MIR3180-2
14  chr16   14968346       15463901     NR_037466      MIR3180-4
15  chr16   14968346       15463901     NR_103772   LOC100288162
16  chr16   14968346       15463901     NR_106775      MIR6511B1
17  chr16   14968346       15463901     NR_106965      MIR6511B2
18  chr16   14968346       15463901     NR_106970      MIR6511A3
19  chr16   14968346       15463901     NR_107060      MIR6770-2
20  chr16   14968346       15463901     NR_123721  PKD1P6-NPIPP1
22  chr16   14968346       15463901     NR_125434   LOC100505915
23  chr16   14968346       15463901     NR_128713      MIR3670-4
24   chr4   68950969       69430168  NM_001031732         YTHDC1
25   chr4   68950969       69430168     NM_001077        UGT2B17
26   chr4   68950969       69430168     NM_014058      TMPRSS11E
27   chr4   68950969       69430168     NM_182502      TMPRSS11B
28   chr4   68950969       69430168     NM_207407      TMPRSS11F
29   chr4   68950969       69430168     NR_015446         FTLP10
30   chr4   68950969       69430168     NR_104048    TMPRSS11BNL
31   chr5   17475164       17621643     NR_134270   LOC102723526,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21705484       22418086  NM_001001912         OR4E2
1   chr14   21705484       22418086  NM_001005465        OR10G3
2   chr14   21705484       22418086  NM_001005466        OR10G2
3   chr14   21705484       22418086  NM_001163380         RAB2B
4   chr14   21705484       22418086  NM_001170629          CHD8
5   chr14   21705484       22418086  NM_001303523          TOX4
6   chr14   21705484       22418086  NM_001317107         OR4E1
7   chr14   21705484       22418086     NM_007192       SUPT16H
8   chr14   21705484       22418086     NM_019852        METTL3
9   chr14   21705484       22418086     NM_020366       RPGRIP1
11  chr14   21705484       22418086     NM_031314        HNRNPC
13  chr14   21705484       22418086     NR_002916        SNORD8
14  chr14   21705484       22418086     NR_003029        SNORD9
15  chr14   21705484       22418086     NR_111966         SALL2
17  chr17   21386341       21533623  NM_001113434      C17orf51
18   chr7   64042785       64227135  NM_001282360        ZNF107
19   chr7   64042785       64227135     NR_033245     LOC641746
20   chr7   64042785       64227135     NR_077227  LOC100128885
22   chr7   64042785       64227135     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21812739       23353530  NM_001001912     OR4E2
1   chr14   21812739       23353530  NM_001005465    OR10G3
2   chr14   21812739       23353530  NM_001005466    OR10G2
3   chr14   21812739       23353530  NM_001126105    SLC7A7
5   chr14   21812739       23353530  NM_001163380     RAB2B
6   chr14   21812739       23353530  NM_001170629      CHD8
7   chr14   21812739       23353530  NM_001303523      TOX4
8   chr14   21812739       23353530  NM_001317107     OR4E1
9   chr14   21812739       23353530  NM_001318870    MRPL52
10  chr14   21812739       23353530  NM_001329226     LRP10
11  chr14   21812739       23353530     NM_001344      DAD1
12  chr14   21812739       23353530     NM_004995     MMP14
13  chr14   21812739       23353530     NM_005015     OXA1L
14  chr14   21812739       23353530     NM_007192   SUPT16H
15  chr14   21812739       23353530     NM_019852    METTL3
16  chr14   21812739       23353530     NM_020366   RPGRIP1
18  chr14   21812739       23353530     NM_022060     ABHD4
20  chr14   21812739       23353530     NM_173527      REM2
21  chr14   21812739       23353530     NR_002916    SNORD8
22  chr14   21812739       23353530     NR_003029    SNORD9
24  chr14   21812739       23353530     NR_111966     SALL2
26   chr3   60273297       60507688  NM_001320899      FHIT
27   chr7  110360803      110683078  NM_001244606    IMMP2L
29   chr7  110660137      110956868  NM_001099658     LRRN3
30   chr7  110660137      110956868  NM_001244606    IMMP2L
32   chr9  108434145      108740293     NM_018112   TMEM38B,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr20   14665982       14768630  NM_080676   MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21558915       22052123  NM_001077180        METTL9
1   chr16   21558915       22052123  NM_001161683          OTOA
2   chr16   21558915       22052123  NM_001164579      C16orf52
4   chr16   21558915       22052123  NM_001310148        NPIPB4
5   chr16   21558915       22052123     NM_003366        UQCRC2
6   chr16   21558915       22052123     NM_005849         IGSF6
9   chr16   21558915       22052123     NM_173806         PDZD9
10  chr16   21558915       22052123     NR_003370        RRN3P1
11  chr16   21558915       22052123     NR_110930  LOC101927814
12   chr2  233016306      233251049  NM_001257281        DIS3L2
13   chr2  233016306      233251049     NM_001632          ALPP
15   chr2  233016306      233251049     NR_028501       ECEL1P2
16  chr22   19024146       19266273  NM_001184781         DGCR2
17  chr22   19024146       19266273  NM_001256534       SLC25A1
18  chr22   19024146       19266273     NM_001835        CLTCL1
19  chr22   19024146       19266273     NM_005315          GSC2
21  chr22   19024146       19266273     NM_022719        DGCR14
22  chr22   19024146       19266273     NM_053006         TSSK2
23  chr22   19024146       19266273     NR_024157        DGCR11
24  chr22   19024146       19266273     NR_103767     LINC01311,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr10  100622100      100787968  NM_001166244        HPSE2
1  chr10  100622100      100787968     NR_106762      MIR6507
2  chr13   85971964       86083414     NR_046989    LINC00351
3  chr18   64250467       64351734     NM_021153        CDH19
4  chr20   14811640       14933384     NM_080676      MACROD2
5  chr20   14811640       14933384     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   90868853       91055724     NR_030754        MIR622
1   chr15   82815539       82962633  NM_001164465     GOLGA6L10
2   chr15   82815539       82962633  NM_001291420      GOLGA6L9
4   chr15   82815539       82962633     NR_026811     GOLGA2P10
5   chr15   82815539       82962633     NR_045529     ADAMTS7P1
6   chr15   82815539       82962633     NR_102747     LOC727751
7   chr15   82815539       82962633     NR_111943         RPS17
9   chr15   82815539       82962633     NR_111962    GOLGA6L17P
10  chr20   14653425       16209666  NM_001033087       MACROD2
12  chr20   14653425       16209666     NR_037841   MACROD2-AS1
14  chr20   14653425       16209666     NR_130924     LOC613266
16   chr7  110613197      110772449  NM_001099658         LRRN3
17   chr7  110613197      110772449  NM_001244606        IMMP2L
19   chr8   97784994       98054297     NM_016134           CPQ
20   chr8   97784994       98054297     NR_125390  LOC101927066,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81432513       81758172  NM_001278495      NUTM2B
1   chr10   81432513       81758172     NM_003019       SFTPD
2   chr10   81432513       81758172     NR_002724       MBL1P
3   chr10   81432513       81758172     NR_027512     BEND3P3
4   chr10   81432513       81758172     NR_029407   LOC642361
5   chr10   81432513       81758172     NR_033857     BMS1P21
6   chr10   81432513       81758172     NR_120611  NUTM2B-AS1
9   chr22   18983420       19340902  NM_001184781       DGCR2
10  chr22   18983420       19340902  NM_001256534     SLC25A1
11  chr22   18983420       19340902     NM_001835      CLTCL1
12  chr22   18983420       19340902     NM_003325        HIRA
13  chr22   18983420       19340902     NM_005315        GSC2
15  chr22   18983420       19340902     NM_022719      DGCR14
16  chr22   18983420       19340902     NM_053006       TSSK2
17  chr22   18983420       19340902     NR_024157      DGCR11
18  chr22   18983420       19340902     NR_024159       DGCR9
19  chr22   18983420       19340902     NR_026651      DGCR10
20  chr22   18983420       19340902     NR_103767   LINC01311
21  chr22   18983420       19340902     NR_110533       DGCR5
22   chr7  110603685      110735477  NM_001099658       LRRN3
23   chr7  110603685      110735477  NM_001244606      IMMP2L
25   chr9   28618626       28764055  NM_001258282      LINGO2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21728465       21939448  NM_001163380      RAB2B
1   chr14   21728465       21939448  NM_001170629       CHD8
2   chr14   21728465       21939448     NM_007192    SUPT16H
3   chr14   21728465       21939448     NM_020366    RPGRIP1
5   chr14   21728465       21939448     NM_031314     HNRNPC
7   chr14   21728465       21939448     NR_002916     SNORD8
8   chr14   21728465       21939448     NR_003029     SNORD9
9    chr3  162857756      163114217     NR_033945  LINC01192
10   chr4   71417362       71688557  NM_001037442      RUFY3
11   chr4   71417362       71688557  NM_001098477      GRSF1
17   chr4   71417362       71688557     NM_016519       AMBN
18   chr4   71417362       71688557     NM_020368       UTP3
19   chr4   71417362       71688557     NM_031889       ENAM
20   chr4   71417362       71688557     NM_144646     JCHAIN, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21817078       22037834  NM_001163380     RAB2B
1   chr14   21817078       22037834  NM_001170629      CHD8
2   chr14   21817078       22037834  NM_001303523      TOX4
3   chr14   21817078       22037834     NM_007192   SUPT16H
4   chr14   21817078       22037834     NM_019852    METTL3
5   chr14   21817078       22037834     NM_020366   RPGRIP1
8   chr14   21817078       22037834     NR_002916    SNORD8
9   chr14   21817078       22037834     NR_003029    SNORD9
10  chr14   21817078       22037834     NR_111966     SALL2
12  chr14   75114504       75216524  NM_001039479     AREL1
13  chr14   75114504       75216524  NM_001318508      FCF1
15  chr20   25362815       25552667  NM_001042472    ABHD12
16  chr20   25362815       25552667  NM_001318226      NINL
18  chr20   25362815       25552667     NM_021067     GINS1
19   chr7   64099475       64427417  NM_001160183    ZNF138
20   chr7   64099475       64427417  NM_001282360    ZNF107
21   chr7   64099475       64427417     NM_021148    ZNF273
24   chr7   64099475       64427417     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18470824       18816493  NM_001004060         NOMO2
1   chr16   18470824       18816493     NM_001019        RPS15A
2   chr16   18470824       18816493  NM_001313858       ARL6IP1
3   chr16   18470824       18816493     NM_015092          SMG1
5   chr16   18470824       18816493     NR_003569       ABCC6P1
6   chr16   18470824       18816493     NR_036140     MIR3179-1
7   chr16   18470824       18816493     NR_036142     MIR3180-2
8   chr16   18470824       18816493     NR_036144     MIR3180-3
9   chr16   18470824       18816493     NR_037442     MIR3670-1
10  chr16   18470824       18816493     NR_107060     MIR6770-2
11   chr6  161891539      162236175     NM_013988         PARK2
12   chr6  161891539      162236175     NR_134594  LOC105378098,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   21873934       21977627  NM_001163380         RAB2B
1  chr14   21873934       21977627  NM_001170629          CHD8
2  chr14   21873934       21977627  NM_001303523          TOX4
3  chr14   21873934       21977627     NM_019852        METTL3
6   chr2  216244775      216349365  NM_001306129           FN1
9   chr2  216244775      216349365     NR_110607  LOC102724849,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28546407       29430615  NM_001130414         APBA2
1   chr15   28546407       29430615  NM_001282468       GOLGA8M
2   chr15   28546407       29430615     NM_004667         HERC2
3   chr15   28546407       29430615     NM_015307      FAM189A1
4   chr15   28546407       29430615     NR_026589       WHAMMP2
5   chr15   28546407       29430615     NR_033351       GOLGA8F
7   chr15   28546407       29430615     NR_033353       GOLGA8G
9   chr15   28546407       29430615     NR_036443       HERC2P9
10  chr15   28546407       29430615     NR_036475  LOC100289656
11  chr15   28546407       29430615     NR_037599     PDCD6IPP2
12  chr15   28546407       29430615     NR_039734     MIR4509-3
14  chr15   28546407       29430615     NR_047567     GOLGA6L7P
15   chr2  186592427      186736534     NM_173651         FSIP2
16   chr2  186592427      186736534     NR_110214  LOC101927196
19   chr2  186592427      186736534     NR_144453     FSIP2-AS1
21   chr7      56010         210440     NM_020223        FAM20C
22   chr7      56010         210440     NR_108065  LOC100507642
23   chr7      56010         210440     NR_134324  LOC105375115
24   chr7      56010         210440     NR_134325  LOC102723672
25   chr9   28559071       28747507  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   25808815       26273769     NM_024490        ATP10A
1   chr15   25808815       26273769     NR_039865       MIR4715
2   chr15   25808815       26273769     NR_040082  LOC100128714
3   chr15   28523388       29390273  NM_001130414         APBA2
4   chr15   28523388       29390273  NM_001282468       GOLGA8M
5   chr15   28523388       29390273     NM_004667         HERC2
6   chr15   28523388       29390273     NR_026589       WHAMMP2
7   chr15   28523388       29390273     NR_033351       GOLGA8F
9   chr15   28523388       29390273     NR_033353       GOLGA8G
11  chr15   28523388       29390273     NR_036443       HERC2P9
12  chr15   28523388       29390273     NR_036475  LOC100289656
13  chr15   28523388       29390273     NR_037599     PDCD6IPP2
14  chr15   28523388       29390273     NR_039734     MIR4509-3
16  chr15   28523388       29390273     NR_047567     GOLGA6L7P
17   chr6   20871172       21026216     NM_017774        CDKAL1
18   chr9     335779         775360  NM_001190458         DOCK8
19   chr9     335779         775360  NM_001256876         KANK1
23   chr9   28545966       28653340  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11   38925398       46656559     NM_000401           EXT2
1   chr11   38925398       46656559     NM_000741          CHRM4
2   chr11   38925398       46656559  NM_001012334            MDK
3   chr11   38925398       46656559  NM_001024844           CD82
4   chr11   38925398       46656559  NM_001031854          ACCSL
5   chr11   38925398       46656559  NM_001080446       C11orf94
6   chr11   38925398       46656559  NM_001101802         PHF21A
7   chr11   38925398       46656559  NM_001105540           DGKZ
8   chr11   38925398       46656559  NM_001127219           ACCS
9   chr11   38925398       46656559  NM_001127457           CRY2
10  chr11   38925398       46656559  NM_001142931           API5
11  chr11   38925398       46656559  NM_001145033       C11orf96
12  chr11   38925398       46656559  NM_001145265        SLC35C1
14  chr11   38925398       46656559  NM_001247987          SYT13
15  chr11   38925398       46656559  NM_001256695         PRDM11
17  chr11   38925398       46656559  NM_001258320        TP53I11
19  chr11   38925398       46656559  NM_001258419         LRRC4C
20  chr11   38925398       46656559  NM_001267782         AMBRA1
23  chr11   38925398       46656559  NM_001300721         LARGE2
25  chr11   38925398       46656559  NM_001307943          TTC17
28  chr11   38925398       46656559     NM_003654          CHST1
29  chr11   38925398       46656559     NM_005456       MAPK8IP1
30  chr11   38925398       46656559     NM_014741          ATG13
31  chr11   38925398       46656559     NM_016142       HSD17B12
36  chr11   38925398       46656559     NM_021926           ALX4
38  chr11   38925398       46656559     NM_052854        CREB3L1
39  chr11   38925398       46656559     NM_057174          PEX16
40  chr11   38925398       46656559     NM_130783        TSPAN18
41  chr11   38925398       46656559     NM_139178         ALKBH3
42  chr11   38925398       46656559     NM_173811         HARBI1
46  chr11   38925398       46656559     NR_026681      LOC221122
47  chr11   38925398       46656559     NR_026952      SEC14L1P1
48  chr11   38925398       46656559     NR_027134  DKFZp779M0652
49  chr11   38925398       46656559     NR_029697       MIR129-2
50  chr11   38925398       46656559     NR_031577         MIR670
51  chr11   38925398       46656559     NR_033868       HNRNPKP3
52  chr11   38925398       46656559     NR_036117      MIR3160-1
53  chr11   38925398       46656559     NR_036118      MIR3160-2
54  chr11   38925398       46656559     NR_038309   LOC100507205
55  chr11   38925398       46656559     NR_038907     ALKBH3-AS1
56  chr11   38925398       46656559     NR_039837        MIR4688
58  chr11   38925398       46656559     NR_047569   LOC100507384
60  chr11   38925398       46656559     NR_106976        MIR7154
61  chr11   38925398       46656559     NR_120557   LOC101928812
62  chr11   38925398       46656559     NR_120565   LOC101928894
63  chr11   38925398       46656559     NR_120584      LINC01499
64  chr11   38925398       46656559     NR_122071      LOC399886
65  chr11   38925398       46656559     NR_131246       MIR670HG
66  chr11   38925398       46656559     NR_135065   LOC101928591
67  chr14   21758309       21871997  NM_001170629           CHD8
68  chr14   21758309       21871997     NM_007192        SUPT16H
69  chr14   21758309       21871997     NM_020366        RPGRIP1
71  chr14   21758309       21871997     NR_002916         SNORD8
72  chr14   21758309       21871997     NR_003029         SNORD9
73   chr7   63005756       63111149     NR_036246      MIR4283-1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21796744       22155007  NM_001001912         OR4E2
1   chr14   21796744       22155007  NM_001005465        OR10G3
2   chr14   21796744       22155007  NM_001005466        OR10G2
3   chr14   21796744       22155007  NM_001163380         RAB2B
4   chr14   21796744       22155007  NM_001170629          CHD8
5   chr14   21796744       22155007  NM_001303523          TOX4
6   chr14   21796744       22155007  NM_001317107         OR4E1
7   chr14   21796744       22155007     NM_007192       SUPT16H
8   chr14   21796744       22155007     NM_019852        METTL3
9   chr14   21796744       22155007     NM_020366       RPGRIP1
12  chr14   21796744       22155007     NR_002916        SNORD8
13  chr14   21796744       22155007     NR_003029        SNORD9
14  chr14   21796744       22155007     NR_111966         SALL2
16  chr15   20946293       22418971  NM_001004719         OR4M2
17  chr15   20946293       22418971  NM_001005241         OR4N4
18  chr15   20946293       22418971  NM_001277303        POTEB2
19  chr15   20946293       22418971  NM_001277304         POTEB
20  chr15   20946293       22418971     NM_207355        POTEB3
22  chr15   20946293       22418971     NR_015416     LOC727924
23  chr15   20946293       22418971     NR_024387       CXADRP2
24  chr15   20946293       22418971     NR_027053     LOC646214
25  chr15   20946293       22418971     NR_027992        NBEAP1
26  chr15   20946293       22418971     NR_028067        OR4N3P
27  chr15   20946293       22418971     NR_028506         NF1P2
29  chr15   20946293       22418971     NR_036062     MIR3118-2
30  chr15   20946293       22418971     NR_036063     MIR3118-3
31  chr15   20946293       22418971     NR_040094     LINC01193
32  chr15   20946293       22418971     NR_049895     MIR5701-2
33  chr15   20946293       22418971     NR_110480  LOC101927079
37  chr15   20946293       22418971     NR_128721     MIR5701-3
38   chr2   36271983       36739474     NM_016441         CRIM1
39   chr2   36271983       36739474     NR_037631  LOC100288911
40   chr2   97240125       97342315  NM_001115016        KANSL3
41   chr2   97240125       97342315  NM_001293083        FER1L5
43  chr20   25353581       25817068  NM_001042472        ABHD12
44  chr20   25353581       25817068  NM_001290261        ZNF337
45  chr20   25353581       25817068  NM_001318226          NINL
48  chr20   25353581       25817068     NM_021067         GINS1
49  chr20   25353581       25817068     NM_152667          NANP
50  chr20   25353581       25817068     NR_026714       FAM182B
52  chr20   25353581       25817068     NR_126465    ZNF337-AS1
55  chr20   25353581       25817068     NR_135006  LOC105372582
56  chr20   25353581       25817068     NR_135512  LOC105379511
57   chr3  155556873      155699906  NM_001190992       SLC33A1
58   chr3  155556873      155699906     NM_003875          GMPS
59   chr6   91078851       91242352     NM_145332        MAP3K7
60   chr6  162585450      162695262     NM_013988         PARK2
61   chr9   41863751       41970041     NR_003670        FGF7P3
62   chr9   41863751       41970041     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   82207811       82739261  NM_001297704    ADGRL2
2   chr12  130214692      130349942     NM_133448  TMEM132D
3   chr14   21816101       22252598  NM_001001912     OR4E2
4   chr14   21816101       22252598  NM_001005465    OR10G3
5   chr14   21816101       22252598  NM_001005466    OR10G2
6   chr14   21816101       22252598  NM_001163380     RAB2B
7   chr14   21816101       22252598  NM_001170629      CHD8
8   chr14   21816101       22252598  NM_001303523      TOX4
9   chr14   21816101       22252598  NM_001317107     OR4E1
10  chr14   21816101       22252598     NM_007192   SUPT16H
11  chr14   21816101       22252598     NM_019852    METTL3
12  chr14   21816101       22252598     NM_020366   RPGRIP1
15  chr14   21816101       22252598     NR_002916    SNORD8
16  chr14   21816101       22252598     NR_003029    SNORD9
17  chr14   21816101       22252598     NR_111966     SALL2
19  chr14   47813799       48145822  NM_001113498     MDGA2
20   chr6   12800987       12982396  NM_001322308   PHACTR1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr10  128327495      128666232  NM_001290223          DOCK1
1   chr11   60292291       60631948  NM_001278320         MS4A13
2   chr11   60292291       60631948  NM_001310141         MS4A18
3   chr11   60292291       60631948     NM_004778         PTGDR2
4   chr11   60292291       60631948     NM_024098         CCDC86
5   chr11   60292291       60631948     NM_031457          MS4A8
6   chr11   60292291       60631948     NM_152717         MS4A15
7   chr11   60292291       60631948     NM_206893         MS4A10
8   chr11   60292291       60631948     NR_026946      LINC00301
9   chr14   21942514       22055804  NM_001005465         OR10G3
10  chr14   21942514       22055804  NM_001163380          RAB2B
11  chr14   21942514       22055804  NM_001303523           TOX4
12  chr14   21942514       22055804     NM_019852         METTL3
14  chr14   21942514       22055804     NR_111966          SALL2
16  chr15   28712617       28826069     NR_033351        GOLGA8F
17  chr15   28712617       28826069     NR_033353        GOLGA8G
18  chr15   28712617       28826069     NR_039734      MIR4509-3
19  chr16   15118465       16674706  NM_001004067          NOMO3
20  chr16   15118465       16674706  NM_001040113          MYH11
21  chr16   15118465       16674706  NM_001079528          ABCC6
22  chr16   15118465       16674706  NM_001128423         MPV17L
23  chr16   15118465       16674706  NM_001142469       C16orf45
24  chr16   15118465       16674706  NM_001143979           NDE1
26  chr16   15118465       16674706  NM_001184998       KIAA0430
27  chr16   15118465       16674706  NM_001270767          NTAN1
28  chr16   15118465       16674706  NM_001277325         NPIPA5
29  chr16   15118465       16674706  NM_001282511         NPIPA8
30  chr16   15118465       16674706  NM_001285445         PDXDC1
35  chr16   15118465       16674706  NM_001301064           RRN3
37  chr16   15118465       16674706     NM_004996          ABCC1
40  chr16   15118465       16674706     NR_030159         MIR484
41  chr16   15118465       16674706     NR_036140      MIR3179-1
42  chr16   15118465       16674706     NR_036141      MIR3180-1
43  chr16   15118465       16674706     NR_036142      MIR3180-2
44  chr16   15118465       16674706     NR_036447         PKD1P1
45  chr16   15118465       16674706     NR_037466      MIR3180-4
46  chr16   15118465       16674706     NR_103772   LOC100288162
47  chr16   15118465       16674706     NR_106761        MIR6506
48  chr16   15118465       16674706     NR_106766      MIR6511A1
49  chr16   15118465       16674706     NR_106775      MIR6511B1
50  chr16   15118465       16674706     NR_106965      MIR6511B2
51  chr16   15118465       16674706     NR_106971      MIR6511A4
52  chr16   15118465       16674706     NR_107060      MIR6770-2
53  chr16   15118465       16674706     NR_123721  PKD1P6-NPIPP1
55  chr16   15118465       16674706     NR_125434   LOC100505915
56  chr16   15118465       16674706     NR_128713      MIR3670-4
57  chr16   15118465       16674706     NR_130755          FOPNL
58   chr2     906661        1038667     NM_018968          SNTG2
59   chr2     906661        1038667     NR_136151   LOC101060391
60   chr2  133559153      133774275     NM_207363         NCKAP5
61   chr2  133559153      133774275     NR_135572   LOC101928185
62   chr6  162378168      162504881     NM_013988          PARK2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21755789       21880577  NM_001170629      CHD8
1  chr14   21755789       21880577     NM_007192   SUPT16H
2  chr14   21755789       21880577     NM_020366   RPGRIP1
4  chr14   21755789       21880577     NR_002916    SNORD8
5  chr14   21755789       21880577     NR_003029    SNORD9
6  chr17   14009339       14132266     NM_001303     COX10,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   54770082       55435003     NR_031628       MIR1297
1   chr13   63294028       63405478     NR_047029     LINC00448
4   chr14   21868256       21979272  NM_001163380         RAB2B
5   chr14   21868256       21979272  NM_001170629          CHD8
6   chr14   21868256       21979272  NM_001303523          TOX4
7   chr14   21868256       21979272     NM_019852        METTL3
10   chr2  186477551      186718620     NM_173651         FSIP2
11   chr2  186477551      186718620     NR_110214  LOC101927196
14   chr2  186477551      186718620     NR_144453     FSIP2-AS1
16   chr4   93216648       93419554     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  102441915      102542376     NR_110211      OLFM3
1   chr11   67270699       67394641     NM_000852      GSTP1
2   chr11   67270699       67394641  NM_001166102     NDUFV1
3   chr11   67270699       67394641  NM_001318496      CABP2
4   chr11   67270699       67394641     NM_004910    PITPNM1
5   chr11   67270699       67394641     NM_005851    CDK2AP2
6   chr11   67270699       67394641     NR_033791     DOC2GP
8   chr11   67270699       67394641     NR_130935   C11orf72
9   chr14   21816790       21961449  NM_001163380      RAB2B
10  chr14   21816790       21961449  NM_001170629       CHD8
11  chr14   21816790       21961449  NM_001303523       TOX4
12  chr14   21816790       21961449     NM_007192    SUPT16H
13  chr14   21816790       21961449     NM_020366    RPGRIP1
16  chr14   21816790       21961449     NR_002916     SNORD8
17  chr14   21816790       21961449     NR_003029     SNORD9
18  chr14   47794396       48975303  NM_001113498      MDGA2
20  chr14   47794396       48975303     NR_037503    MIR548Y
21  chr14   47794396       48975303     NR_039996  LINC00648
23  chr18   35064411       35193447     NM_020180      CELF4
24  chr22   17253155       17412407     NM_175878       XKR3
25  chr22   17253155       17412407     NR_003607    HSFY1P1
26   chr5  104422764      104525229     NR_000039    RAB9BP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   95823299       96082453     NM_032427         MAML2
1   chr11   95823299       96082453     NR_036125      MIR1260B
2   chr22   17239647       17834051  NM_001037814          GAB4
3   chr22   17239647       17834051  NM_001163079         CECR6
4   chr22   17239647       17834051  NM_001282227         CECR1
6   chr22   17239647       17834051  NM_001289905        IL17RA
7   chr22   17239647       17834051     NM_017829         CECR5
10  chr22   17239647       17834051     NM_175878          XKR3
12  chr22   17239647       17834051     NR_003607       HSFY1P1
13  chr22   17239647       17834051     NR_015352         CECR7
14  chr22   17239647       17834051     NR_024482     CECR5-AS1
15  chr22   17239647       17834051     NR_038398         CECR3
16  chr22   17239647       17834051     NR_103793  LOC100996342,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  243520125      243638165     NM_006642       SDCCAG8
1   chr14   21712632       21947317  NM_001163380         RAB2B
2   chr14   21712632       21947317  NM_001170629          CHD8
3   chr14   21712632       21947317  NM_001303523          TOX4
4   chr14   21712632       21947317     NM_007192       SUPT16H
5   chr14   21712632       21947317     NM_020366       RPGRIP1
7   chr14   21712632       21947317     NM_031314        HNRNPC
9   chr14   21712632       21947317     NR_002916        SNORD8
10  chr14   21712632       21947317     NR_003029        SNORD9
11  chr14   26977613       27328605     NM_002515         NOVA1
13  chr14   26977613       27328605     NR_110033  LOC101927062
14  chr14   26977613       27328605     NR_110556  LOC102724890
15  chr15   21164727       21295048     NR_040094     LINC01193
16  chr17   47802226       47920233  NM_001077503          TAC4
17  chr17   47802226       47920233  NM_001199158          KAT7
18  chr17   47802226       47920233     NM_030802       FAM117A
19   chr3   60263947       60607447  NM_001320899          FHIT
20   chr3   60263947       60607447     NR_128708      MIR548BB
21   chr5   93370358       93493700  NM_001145678      KIAA0825
22   chr5   93370358       93493700  NM_001163418       FAM172A
23   chr6  161767458      161990114     NM_013988         PARK2
24   chr6  161767458      161990114     NR_134594  LOC105378098
25   chr6  162861157      162966907     NM_013988         PARK2
26   chr7    4063616        4492041  NM_001079653          SDK1
28   chr7  121458566      121722058  NM_001206838        PTPRZ1
29   chr7  121458566      121722058     NM_005763          AASS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143736338      146010478  NM_001002810       PDE4DIP
3    chr1  143736338      146010478  NM_001012758        NUDT17
4    chr1  143736338      146010478  NM_001039888      ANKRD34A
5    chr1  143736338      146010478  NM_001097612        GPR89A
6    chr1  143736338      146010478  NM_001123068       PPIAL4G
7    chr1  143736338      146010478  NM_001135789       PPIAL4C
8    chr1  143736338      146010478  NM_001184795        PEX11B
13   chr1  143736338      146010478  NM_001201325         PDZK1
14   chr1  143736338      146010478  NM_001277444         NBPF9
15   chr1  143736338      146010478  NM_001278267        NBPF20
16   chr1  143736338      146010478  NM_001280799       ANKRD35
17   chr1  143736338      146010478  NM_001287385        FAM72C
18   chr1  143736338      146010478  NM_001302371        NBPF10
19   chr1  143736338      146010478  NM_001303040        ITGA10
20   chr1  143736338      146010478  NM_001303456        POLR3C
21   chr1  143736338      146010478  NM_001313972         TXNIP
22   chr1  143736338      146010478  NM_001345942        FAM72D
26   chr1  143736338      146010478     NM_004892        SEC22B
27   chr1  143736338      146010478     NM_005105         RBM8A
28   chr1  143736338      146010478     NM_006099         PIAS3
31   chr1  143736338      146010478     NM_007053         CD160
32   chr1  143736338      146010478     NM_014455        RNF115
34   chr1  143736338      146010478     NM_032305       POLR3GL
35   chr1  143736338      146010478     NM_145277          HFE2
36   chr1  143736338      146010478     NM_153713         LIX1L
37   chr1  143736338      146010478     NM_203458      NOTCH2NL
39   chr1  143736338      146010478     NR_002328        GNRHR2
40   chr1  143736338      146010478     NR_003242        PFN1P2
41   chr1  143736338      146010478     NR_024511     LINC00623
44   chr1  143736338      146010478     NR_102405         NBPF8
45   chr1  143736338      146010478     NR_104014     LINC01138
48   chr1  143736338      146010478     NR_104217       NBPF25P
50   chr1  143736338      146010478     NR_106794       MIR6736
51   chr1  143736338      146010478     NR_111936       PDZK1P1
52   chr1  143736338      146010478     NR_111953     LINC00869
53   chr1  143736338      146010478     NR_125967  LOC101928979
55   chr1  245011123      245307445  NM_001143943        EFCAB2
57   chr1  245011123      245307445     NM_004501        HNRNPU
59   chr1  245011123      245307445     NR_111907  LOC101928068
60   chr1  245011123      245307445     NR_132782      SNORA100
61  chr18   61769340       62112840     NR_027245     LINC00305
62  chr18   61769340       62112840     NR_033881     LOC284294
63  chr18   61769340       62112840     NR_033983     LINC01538
64   chr8    4192386        4318897     NM_033225         CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12792026       12936733  NM_001013631      HNRNPCL1
1    chr1   12792026       12936733  NM_001080830      PRAMEF12
2    chr1   12792026       12936733  NM_001146181      HNRNPCL3
3    chr1   12792026       12936733  NM_001146344      PRAMEF11
4    chr1   12792026       12936733  NM_001294139       PRAMEF1
5    chr1   12792026       12936733  NM_001302551      HNRNPCL4
7    chr1   12792026       12936733     NM_023014       PRAMEF2
8    chr1   12792026       12936733     NM_152290      C1orf158
9    chr1   12791619       14389627  NM_001006624          PDPN
10   chr1   12791619       14389627  NM_001007257         PRDM2
11   chr1   12791619       14389627  NM_001009611       PRAMEF4
12   chr1   12791619       14389627  NM_001010847        LRRC38
13   chr1   12791619       14389627  NM_001010889       PRAMEF6
15   chr1   12791619       14389627  NM_001010890       PRAMEF9
16   chr1   12791619       14389627  NM_001012276       PRAMEF8
19   chr1   12791619       14389627  NM_001013407       PRAMEF5
21   chr1   12791619       14389627  NM_001013631      HNRNPCL1
22   chr1   12791619       14389627  NM_001024661      PRAMEF14
24   chr1   12791619       14389627  NM_001039361      PRAMEF10
26   chr1   12791619       14389627  NM_001080830      PRAMEF12
27   chr1   12791619       14389627  NM_001098376      PRAMEF15
29   chr1   12791619       14389627  NM_001099790      PRAMEF19
31   chr1   12791619       14389627  NM_001099850      PRAMEF18
33   chr1   12791619       14389627  NM_001099851      PRAMEF17
35   chr1   12791619       14389627  NM_001099852      PRAMEF20
37   chr1   12791619       14389627  NM_001100631      PRAMEF22
40   chr1   12791619       14389627  NM_001136561      HNRNPCL2
41   chr1   12791619       14389627  NM_001146181      HNRNPCL3
42   chr1   12791619       14389627  NM_001146344      PRAMEF11
43   chr1   12791619       14389627  NM_001291381     PRAMEF33P
45   chr1   12791619       14389627  NM_001294139       PRAMEF1
46   chr1   12791619       14389627  NM_001300891      PRAMEF27
49   chr1   12791619       14389627  NM_001302551      HNRNPCL4
50   chr1   12791619       14389627  NM_001306072      PRAMEF26
51   chr1   12791619       14389627  NM_001310134      PRAMEF25
55   chr1   12791619       14389627     NM_023014       PRAMEF2
56   chr1   12791619       14389627     NM_152290      C1orf158
58   chr1   12791619       14389627     NR_111945     PRAMEF36P
60  chr15   28692115       29424955  NM_001130414         APBA2
61  chr15   28692115       29424955  NM_001282468       GOLGA8M
62  chr15   28692115       29424955     NM_015307      FAM189A1
63  chr15   28692115       29424955     NR_026589       WHAMMP2
64  chr15   28692115       29424955     NR_033351       GOLGA8F
65  chr15   28692115       29424955     NR_033353       GOLGA8G
66  chr15   28692115       29424955     NR_036443       HERC2P9
67  chr15   28692115       29424955     NR_036475  LOC100289656
68  chr15   28692115       29424955     NR_037599     PDCD6IPP2
69  chr15   28692115       29424955     NR_039734     MIR4509-3
70  chr15   28692115       29424955     NR_047567     GOLGA6L7P
71   chr2    1101379        1247631     NM_018968         SNTG2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21812955       21944146  NM_001163380     RAB2B
1  chr14   21812955       21944146  NM_001170629      CHD8
2  chr14   21812955       21944146     NM_007192   SUPT16H
3  chr14   21812955       21944146     NM_020366   RPGRIP1
6  chr14   21812955       21944146     NR_002916    SNORD8
7  chr14   21812955       21944146     NR_003029    SNORD9
8   chr6  162680317      162816021     NM_013988     PARK2
9   chr9   39022413       39156440     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   10585613       10760074  NM_001300739        MAGOHB
1   chr12   10585613       10760074  NM_001304448         KLRC1
3   chr12   10585613       10760074     NM_002260         KLRC2
6   chr12   10585613       10760074     NR_028045        KLRA1P
7   chr16   83961505       84091512  NM_001080442       SLC38A8
8   chr16   83961505       84091512     NM_003791        MBTPS1
9   chr16   83961505       84091512     NM_019065        NECAB2
10  chr16   83961505       84091512     NM_182981        OSGIN1
11   chr2  186309666      187100822     NM_173651         FSIP2
12   chr2  186309666      187100822     NR_110214  LOC101927196
15   chr2  186309666      187100822     NR_110218     LINC01473
16   chr2  186309666      187100822     NR_144453     FSIP2-AS1
18   chr4  169269124      169430778  NM_001012967        DDX60L
19   chr4  169269124      169430778  NM_001166108         PALLD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27615358       27989061  NM_001034842        PTCHD3
1   chr10   27615358       27989061  NM_001242702           MKX
2   chr10   27615358       27989061  NM_001256411         RAB18
3   chr10   27615358       27989061     NR_138082       ARMC4P1
4   chr13   80844396       80948089  NM_001318536         SPRY2
7   chr14   21945337       22131452  NM_001005465        OR10G3
8   chr14   21945337       22131452  NM_001005466        OR10G2
9   chr14   21945337       22131452  NM_001303523          TOX4
10  chr14   21945337       22131452     NM_019852        METTL3
11  chr14   21945337       22131452     NR_111966         SALL2
13   chr9   41884994       42025459     NR_003670        FGF7P3
14   chr9   41884994       42025459     NR_015363         GLIDR
17   chr9   41884994       42025459     NR_126048  LOC102724238
18   chr9   41884994       42025459     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   19625037       20080459  NM_001267043         AEBP2
2   chr16   16302724       16767678  NM_001004067         NOMO3
3   chr16   16302724       16767678  NM_001079528         ABCC6
5   chr16   16302724       16767678  NM_001282511        NPIPA8
6   chr16   16302724       16767678     NR_036140     MIR3179-1
7   chr16   16302724       16767678     NR_036141     MIR3180-1
8   chr16   16302724       16767678     NR_036142     MIR3180-2
9   chr16   16302724       16767678     NR_036447        PKD1P1
10  chr16   16302724       16767678     NR_103772  LOC100288162
11  chr16   16302724       16767678     NR_106766     MIR6511A1
12  chr16   16302724       16767678     NR_106971     MIR6511A4
13  chr16   16302724       16767678     NR_107060     MIR6770-2
14  chr16   16302724       16767678     NR_128713     MIR3670-4
15   chr3   80426804       81062233     NR_132411     LOC728290
16   chr4   98314051       98517999     NM_174952         STPG2
17   chr4   98314051       98517999     NR_102713     STPG2-AS1
18   chr4  169257199      169503862  NM_001012967        DDX60L
19   chr4  169257199      169503862  NM_001166108         PALLD
21   chr5  109791427      110074398  NM_001039763       TMEM232
22   chr5  109791427      110074398  NM_001303250      SLC25A46
23   chr5  109791427      110074398     NR_031644      MIR548F3
24   chr7   10779811       11041564     NM_002489        NDUFA4
25   chr7   10779811       11041564     NM_014660         PHF14,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   86059945       86337339     NM_017953        ZNHIT6
1    chr1   86059945       86337339     NM_152890       COL24A1
2   chr14   21881850       23403279  NM_001001912         OR4E2
3   chr14   21881850       23403279  NM_001005465        OR10G3
4   chr14   21881850       23403279  NM_001005466        OR10G2
5   chr14   21881850       23403279  NM_001039619         PRMT5
6   chr14   21881850       23403279  NM_001126105        SLC7A7
8   chr14   21881850       23403279  NM_001163380         RAB2B
9   chr14   21881850       23403279  NM_001170629          CHD8
10  chr14   21881850       23403279  NM_001303523          TOX4
11  chr14   21881850       23403279  NM_001317107         OR4E1
12  chr14   21881850       23403279  NM_001318870        MRPL52
13  chr14   21881850       23403279  NM_001329226         LRP10
14  chr14   21881850       23403279     NM_001344          DAD1
15  chr14   21881850       23403279     NM_004995         MMP14
16  chr14   21881850       23403279     NM_005015         OXA1L
17  chr14   21881850       23403279     NM_018107         RBM23
18  chr14   21881850       23403279     NM_019852        METTL3
20  chr14   21881850       23403279     NM_022060         ABHD4
22  chr14   21881850       23403279     NM_173527          REM2
24  chr14   21881850       23403279     NR_110002  LOC101926933
25  chr14   21881850       23403279     NR_111966         SALL2
27  chr14   21881850       23403279     NR_120599     PRMT5-AS1
28  chr21   22531967       23194986     NM_004540         NCAM2
29  chr21   22531967       23194986     NR_038872     LINC00317
30  chr21   22531967       23194986     NR_109958     LINC01425,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12778842       13739425  NM_001009611      PRAMEF4
1    chr1   12778842       13739425  NM_001010889      PRAMEF6
3    chr1   12778842       13739425  NM_001010890      PRAMEF9
4    chr1   12778842       13739425  NM_001012276      PRAMEF8
7    chr1   12778842       13739425  NM_001013407      PRAMEF5
9    chr1   12778842       13739425  NM_001013631     HNRNPCL1
10   chr1   12778842       13739425  NM_001024661     PRAMEF14
12   chr1   12778842       13739425  NM_001039361     PRAMEF10
14   chr1   12778842       13739425  NM_001080830     PRAMEF12
15   chr1   12778842       13739425  NM_001098376     PRAMEF15
17   chr1   12778842       13739425  NM_001099790     PRAMEF19
19   chr1   12778842       13739425  NM_001099850     PRAMEF18
21   chr1   12778842       13739425  NM_001099851     PRAMEF17
23   chr1   12778842       13739425  NM_001099852     PRAMEF20
25   chr1   12778842       13739425  NM_001100631     PRAMEF22
27   chr1   12778842       13739425  NM_001103170      AADACL3
28   chr1   12778842       13739425  NM_001136561     HNRNPCL2
29   chr1   12778842       13739425  NM_001146181     HNRNPCL3
30   chr1   12778842       13739425  NM_001146344     PRAMEF11
31   chr1   12778842       13739425  NM_001291381    PRAMEF33P
33   chr1   12778842       13739425  NM_001294139      PRAMEF1
34   chr1   12778842       13739425  NM_001300891     PRAMEF27
37   chr1   12778842       13739425  NM_001302551     HNRNPCL4
38   chr1   12778842       13739425  NM_001306072     PRAMEF26
39   chr1   12778842       13739425  NM_001310134     PRAMEF25
41   chr1   12778842       13739425     NM_023014      PRAMEF2
42   chr1   12778842       13739425     NM_152290     C1orf158
43   chr1   12778842       13739425     NR_111945    PRAMEF36P
45  chr10   38921678       39029909     NR_045000     ACTR3BP5
46  chr16   18504413       18743326  NM_001004060        NOMO2
47  chr16   18504413       18743326     NR_003569      ABCC6P1
48  chr16   18504413       18743326     NR_036140    MIR3179-1
49  chr21   28173713       28306125     NM_006988      ADAMTS1
50  chr21   28173713       28306125     NM_007038      ADAMTS5
51   chr4   69055553       69756910  NM_001031732       YTHDC1
52   chr4   69055553       69756910     NM_001075      UGT2B10
53   chr4   69055553       69756910     NM_001076      UGT2B15
54   chr4   69055553       69756910     NM_001077      UGT2B17
55   chr4   69055553       69756910     NM_014058    TMPRSS11E
56   chr4   69055553       69756910     NM_182502    TMPRSS11B
57   chr4   69055553       69756910     NR_015446       FTLP10
58   chr4   69055553       69756910     NR_104048  TMPRSS11BNL
59   chr4   94035432       94241421     NM_001510        GRID2
60   chr5     167558         319337  NM_001080478      LRRC14B
61   chr5     167558         319337  NM_001242412         AHRR
62   chr5     167558         319337     NM_004168         SDHA
63   chr5     167558         319337     NM_013232        PDCD6
64   chr5     167558         319337     NM_052909     PLEKHG4B
65   chr5     167558         319337     NM_145265      CCDC127
67   chr5     167558         319337     NR_104613        HRAT5
68   chr8    6976474        7121181     NR_027000    LINC00965,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21879829       22550318  NM_001001912      OR4E2
1   chr14   21879829       22550318  NM_001005465     OR10G3
2   chr14   21879829       22550318  NM_001005466     OR10G2
3   chr14   21879829       22550318  NM_001163380      RAB2B
4   chr14   21879829       22550318  NM_001170629       CHD8
5   chr14   21879829       22550318  NM_001303523       TOX4
6   chr14   21879829       22550318  NM_001317107      OR4E1
7   chr14   21879829       22550318     NM_019852     METTL3
10  chr14   21879829       22550318     NR_111966      SALL2
12  chr17   21211341       21712873  NM_001113434   C17orf51
13  chr17   21211341       21712873  NM_001194958     KCNJ18
14  chr17   21211341       21712873  NM_001316332     MAP2K3
16  chr17   21211341       21712873     NM_021012     KCNJ12
17   chr6    5143405        5284196  NM_001164840      LYRM4
19   chr6    5143405        5284196  NM_001318872      FARS2
22   chr6    5143405        5284196     NR_037462    MIR3691
23   chr6    5143405        5284196     NR_126015  LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   25065752       25375141  NM_001009909         LUZP2
1   chr14   21796814       21919021  NM_001170629          CHD8
2   chr14   21796814       21919021     NM_007192       SUPT16H
3   chr14   21796814       21919021     NM_020366       RPGRIP1
5   chr14   21796814       21919021     NR_002916        SNORD8
6   chr14   21796814       21919021     NR_003029        SNORD9
7   chr16   82988083       83209864  NM_001220488         CDH13
9   chr16   82988083       83209864     NR_110937  LOC101928417
10   chr4      74862         229440  NM_001039127        ZNF718
11   chr4      74862         229440  NM_001286052        ZNF595
14   chr4      74862         229440     NR_027481       ZNF876P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   14946230       16321537  NM_001013641        TMEM82
1    chr1   14946230       16321537  NM_001017999          KAZN
4    chr1   14946230       16321537  NM_001024215        FBLIM1
6    chr1   14946230       16321537  NM_001089591        UQCRHL
7    chr1   14946230       16321537  NM_001136216        TMEM51
9    chr1   14946230       16321537  NM_001242884        ZBTB17
10   chr1   14946230       16321537  NM_001278501      C1orf195
12   chr1   14946230       16321537     NM_006511        RSC1A1
13   chr1   14946230       16321537     NM_007272          CTRC
14   chr1   14946230       16321537     NM_015001          SPEN
15   chr1   14946230       16321537     NM_015164       PLEKHM2
17   chr1   14946230       16321537     NM_015849        CELA2B
19   chr1   14946230       16321537     NM_024329         EFHD2
20   chr1   14946230       16321537     NM_024758         AGMAT
21   chr1   14946230       16321537     NM_032341          DDI2
22   chr1   14946230       16321537     NM_032996         CASP9
23   chr1   14946230       16321537     NM_033440        CELA2A
24   chr1   14946230       16321537     NM_052929         FHAD1
26   chr1   14946230       16321537     NM_207348      SLC25A34
27   chr1   14946230       16321537     NR_024279      FLJ37453
28   chr1   14946230       16321537     NR_027136    TMEM51-AS1
29   chr1   14946230       16321537     NR_039973       MIR5096
31   chr1   14946230       16321537     NR_109898       DNAJC16
33  chr10   67939124       68072000  NM_001127384        CTNNA3
35  chr15   28234012       29219591     NM_000275          OCA2
36  chr15   28234012       29219591  NM_001130414         APBA2
37  chr15   28234012       29219591  NM_001282468       GOLGA8M
39  chr15   28234012       29219591     NM_004667         HERC2
40  chr15   28234012       29219591     NR_026589       WHAMMP2
41  chr15   28234012       29219591     NR_033351       GOLGA8F
43  chr15   28234012       29219591     NR_033353       GOLGA8G
45  chr15   28234012       29219591     NR_036443       HERC2P9
46  chr15   28234012       29219591     NR_036475  LOC100289656
47  chr15   28234012       29219591     NR_037599     PDCD6IPP2
48  chr15   28234012       29219591     NR_039734     MIR4509-3
50  chr15   28234012       29219591     NR_047567     GOLGA6L7P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143720882      143826724  NM_001123068       PPIAL4G
1    chr1  143720882      143826724     NR_104014     LINC01138
2   chr15  100181035      100332011  NM_001130928         MEF2A
3   chr15  100181035      100332011  NM_001284417        LYSMD4
6   chr15  100181035      100332011     NR_003260       DNM1P46
7   chr16   21794449       23391239     NM_000336        SCNN1B
8   chr16   21794449       23391239     NM_001039        SCNN1G
9   chr16   21794449       23391239  NM_001135865        NPIPB5
10  chr16   21794449       23391239  NM_001164579      C16orf52
11  chr16   21794449       23391239  NM_001258033        POLR3E
12  chr16   21794449       23391239  NM_001310148        NPIPB4
13  chr16   21794449       23391239     NM_001802          CDR2
14  chr16   21794449       23391239     NM_003366        UQCRC2
15  chr16   21794449       23391239     NM_006043        HS3ST2
16  chr16   21794449       23391239     NM_013302         EEF2K
17  chr16   21794449       23391239     NM_020718         USP31
18  chr16   21794449       23391239     NM_173615         VWA3A
19  chr16   21794449       23391239     NM_173806         PDZD9
20  chr16   21794449       23391239     NR_003370        RRN3P1
21  chr16   21794449       23391239     NR_003676     LOC653786
22  chr16   21794449       23391239     NR_027154        SMG1P1
23  chr16   21794449       23391239     NR_027460        RRN3P3
24  chr16   21794449       23391239     NR_136333       MFSD13B
25   chr2  133586772      133721257     NM_207363        NCKAP5
26   chr2  133586772      133721257     NR_135572  LOC101928185
27  chr22   19954258       20060162     NM_000754          COMT
30  chr22   19954258       20060162  NM_001283116        TANGO2
33  chr22   19954258       20060162     NM_001670         ARVCF
35  chr22   19954258       20060162     NR_029706        MIR185,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63283028       63389734     NR_047029     LINC00448
3   chr14   21926933       22051754  NM_001005465        OR10G3
4   chr14   21926933       22051754  NM_001163380         RAB2B
5   chr14   21926933       22051754  NM_001303523          TOX4
6   chr14   21926933       22051754     NM_019852        METTL3
8   chr14   21926933       22051754     NR_111966         SALL2
10  chr15   59940464       60131009  NM_001320674         BNIP2
12  chr15   59940464       60131009  NM_001320929        GTF2A2
15  chr19    1837132        2180077  NM_001031735        IZUMO4
16  chr19    1837132        2180077  NM_001130111       ABHD17A
17  chr19    1837132        2180077     NM_001319       CSNK1G2
18  chr19    1837132        2180077  NM_001329539        SCAMP4
19  chr19    1837132        2180077     NM_003938         AP3D1
20  chr19    1837132        2180077     NM_017572         MKNK2
21  chr19    1837132        2180077     NM_017797         BTBD2
22  chr19    1837132        2180077     NM_020695         REXO1
23  chr19    1837132        2180077     NM_031918         KLF16
24  chr19    1837132        2180077     NM_032482         DOT1L
25  chr19    1837132        2180077     NM_130807         MOB3A
26  chr19    1837132        2180077     NM_138422         ADAT3
27  chr19    1837132        2180077     NR_033400   CSNK1G2-AS1
28  chr22   17223421       17948752  NM_001037814          GAB4
29  chr22   17223421       17948752  NM_001163079         CECR6
30  chr22   17223421       17948752  NM_001282227         CECR1
32  chr22   17223421       17948752  NM_001289905        IL17RA
33  chr22   17223421       17948752  NM_001290046         CECR2
34  chr22   17223421       17948752     NM_017829         CECR5
37  chr22   17223421       17948752     NM_175878          XKR3
39  chr22   17223421       17948752     NR_003607       HSFY1P1
40  chr22   17223421       17948752     NR_015352         CECR7
41  chr22   17223421       17948752     NR_024482     CECR5-AS1
42  chr22   17223421       17948752     NR_038398         CECR3
43  chr22   17223421       17948752     NR_103793  LOC100996342
44  chr22   17223421       17948752     NR_134584  LOC101929350
45   chr8    7169405        7629187  NM_001040705      DEFB107B
46   chr8    7169405        7629187  NM_001081551      DEFB103A
47   chr8    7169405        7629187  NM_001164457       ZNF705G
48   chr8    7169405        7629187  NM_001205266        DEFB4B
49   chr8    7169405        7629187  NM_001256873       USP17L1
50   chr8    7169405        7629187  NM_001256874       USP17L4
51   chr8    7169405        7629187  NM_001282478       PRR23D2
52   chr8    7169405        7629187  NM_001282479       PRR23D1
53   chr8    7169405        7629187     NM_058200       SPAG11B
57   chr8    7169405        7629187     NM_080389      DEFB104A
58   chr8    7169405        7629187     NM_152250      DEFB105A
59   chr8    7169405        7629187     NM_152251      DEFB106A
60   chr8    7169405        7629187     NR_003668    DEFB109P1B
61   chr8    7169405        7629187     NR_027423        FAM66B
62   chr8    7169405        7629187     NR_046343      FAM90A7P
64   chr8    7169405        7629187     NR_046351     FAM90A10P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28702526       29100593  NM_001282468       GOLGA8M
1   chr15   28702526       29100593     NR_026589       WHAMMP2
2   chr15   28702526       29100593     NR_033351       GOLGA8F
3   chr15   28702526       29100593     NR_033353       GOLGA8G
4   chr15   28702526       29100593     NR_036443       HERC2P9
5   chr15   28702526       29100593     NR_036475  LOC100289656
6   chr15   28702526       29100593     NR_037599     PDCD6IPP2
7   chr15   28702526       29100593     NR_039734     MIR4509-3
8   chr15   28702526       29100593     NR_047567     GOLGA6L7P
9    chr3   41309191       41542565  NM_001322500          ULK4
11   chr5   17735676       18311355     NR_134286     LOC646241
13   chr9   17185775       17307199  NM_001114395         CNTLN
15   chr9   39126470       39249812     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145269265      145376198  NM_001277444         NBPF9
1    chr1  145269265      145376198  NM_001278267        NBPF20
2    chr1  145269265      145376198  NM_001302371        NBPF10
3    chr1  145269265      145376198     NM_203458      NOTCH2NL
4    chr1  145269265      145376198     NR_104217       NBPF25P
5   chr10   37453154       37583913     NM_052997      ANKRD30A
6   chr11   30228904       30461274     NM_000510          FSHB
7   chr11   30228904       30461274  NM_001145399        MPPED2
9   chr11   30228904       30461274     NM_152316       ARL14EP
10  chr16   21523008       21752227  NM_001077180        METTL9
11  chr16   21523008       21752227  NM_001161683          OTOA
13  chr16   21523008       21752227     NM_005849         IGSF6
16  chr16   21523008       21752227     NR_002594      SLC7A5P2
17  chr16   21523008       21752227     NR_110930  LOC101927814
18  chr22   19005621       19283015  NM_001184781         DGCR2
19  chr22   19005621       19283015  NM_001256534       SLC25A1
20  chr22   19005621       19283015     NM_001835        CLTCL1
21  chr22   19005621       19283015     NM_005315          GSC2
23  chr22   19005621       19283015     NM_022719        DGCR14
24  chr22   19005621       19283015     NM_053006         TSSK2
25  chr22   19005621       19283015     NR_024157        DGCR11
26  chr22   19005621       19283015     NR_024159         DGCR9
27  chr22   19005621       19283015     NR_026651        DGCR10
28  chr22   19005621       19283015     NR_103767     LINC01311
29  chr22   19005621       19283015     NR_110533         DGCR5
30   chr7   71425527       73903663     NM_000501           ELN
31   chr7   71425527       73903663  NM_001017440         CALN1
32   chr7   71425527       73903663  NM_001077621        VPS37D
33   chr7   71425527       73903663  NM_001135211         FKBP6
34   chr7   71425527       73903663  NM_001145440         TYW1B
..    ...        ...            ...           ...           ...
50   chr7   71425527       73903663     NM_014146          LAT2
51   chr7   71425527       73903663     NM_016328      GTF2IRD1
52   chr7   71425527       73903663     NM_017528       WBSCR22
54   chr7   71425527       73903663     NM_031992         EIF4H
55   chr7   71425527       73903663     NM_032317       DNAJC30
56   chr7   71425527       73903663     NM_032408         BAZ1B
57   chr7   71425527       73903663     NM_032421         CLIP2
58   chr7   71425527       73903663     NM_032954        MLXIPL
59   chr7   71425527       73903663     NM_152559       WBSCR27
62   chr7   71425527       73903663     NM_182504       WBSCR28
64   chr7   71425527       73903663     NR_001588        SBDSP1
65   chr7   71425527       73903663     NR_002206       GTF2IP1
66   chr7   71425527       73903663     NR_003186         NCF1B
67   chr7   71425527       73903663     NR_003580       GTF2IP4
68   chr7   71425527       73903663     NR_003602     LOC541473
69   chr7   71425527       73903663     NR_003614        PMS2P2
70   chr7   71425527       73903663     NR_003664       SPDYE8P
71   chr7   71425527       73903663     NR_003666       SPDYE7P
73   chr7   71425527       73903663     NR_026690    ABHD11-AS1
74   chr7   71425527       73903663     NR_027776        PMS2P5
75   chr7   71425527       73903663     NR_030321        MIR590
76   chr7   71425527       73903663     NR_033323       NSUN5P2
77   chr7   71425527       73903663     NR_036247       MIR4284
79   chr7   71425527       73903663     NR_039793     MIR4650-1
80   chr7   71425527       73903663     NR_040582       STAG3L3
81   chr7   71425527       73903663     NR_040583       STAG3L1
82   chr7   71425527       73903663     NR_104007  LOC100101148
83   chr7   71425527       73903663     NR_130940        PMS2P7
85   chr7  110512897      110772958  NM_001099658         LRRN3
86   chr7  110512897      110772958  NM_001244606        IMMP2L

[73 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21920855       22284181  NM_001001912         OR4E2
1   chr14   21920855       22284181  NM_001005465        OR10G3
2   chr14   21920855       22284181  NM_001005466        OR10G2
3   chr14   21920855       22284181  NM_001163380         RAB2B
4   chr14   21920855       22284181  NM_001303523          TOX4
5   chr14   21920855       22284181  NM_001317107         OR4E1
6   chr14   21920855       22284181     NM_019852        METTL3
8   chr14   21920855       22284181     NR_111966         SALL2
10  chr15   28546252       28677568     NM_004667         HERC2
11  chr15   28546252       28677568     NR_033351       GOLGA8F
12  chr15   28546252       28677568     NR_033353       GOLGA8G
13  chr15   28546252       28677568     NR_039734     MIR4509-3
14  chr16   76245122       76416437  NM_001322181       CNTNAP4
16  chr17   78160068       78272222     NM_000199          SGSH
17  chr17   78160068       78272222  NM_001166349      SLC26A11
18  chr17   78160068       78272222  NM_001256071        RNF213
19  chr17   78160068       78272222  NM_001257970        CARD14
24   chr2  110144687      110341662  NM_001099289        SH3RF3
25   chr2  110144687      110341662  NM_001321504        SEPT10
27  chr22   19934063       20075499     NM_000754          COMT
30  chr22   19934063       20075499  NM_001190326         DGCR8
31  chr22   19934063       20075499  NM_001283116        TANGO2
34  chr22   19934063       20075499     NM_001670         ARVCF
36  chr22   19934063       20075499     NR_029706        MIR185
37  chr22   19934063       20075499     NR_031706       MIR1306
38  chr22   19934063       20075499     NR_037412       MIR3618
39  chr22   19934063       20075499     NR_039918       MIR4761
40   chr7  124989813      125178610     NR_110188  LOC101928283
41   chr7  143073814      144395169  NM_001001659        OR2A14
42   chr7  143073814      144395169  NM_001003702      ARHGEF35
..    ...        ...            ...           ...           ...
47   chr7  143073814      144395169  NM_001005287         OR2A1
49   chr7  143073814      144395169  NM_001005328         OR2A7
50   chr7  143073814      144395169  NM_001005480         OR2A2
51   chr7  143073814      144395169  NM_001008747       CTAGE15
52   chr7  143073814      144395169  NM_001080413         NOBOX
53   chr7  143073814      144395169  NM_001130025         TCAF2
55   chr7  143073814      144395169  NM_001206938         TCAF1
57   chr7  143073814      144395169  NM_001278507        CTAGE8
58   chr7  143073814      144395169  NM_001322263  LOC100507507
59   chr7  143073814      144395169     NM_003461           ZYX
60   chr7  143073814      144395169     NM_005232         EPHA1
61   chr7  143073814      144395169     NM_005435       ARHGEF5
62   chr7  143073814      144395169     NM_012365         OR2A5
63   chr7  143073814      144395169     NM_012369         OR2F1
65   chr7  143073814      144395169     NM_022445          TPK1
67   chr7  143073814      144395169     NM_176883       TAS2R41
68   chr7  143073814      144395169     NM_177437       TAS2R60
69   chr7  143073814      144395169     NM_178561        CTAGE6
70   chr7  143073814      144395169     NM_198495        CTAGE4
72   chr7  143073814      144395169     NR_002157        OR2A9P
74   chr7  143073814      144395169     NR_002158       OR2A20P
76   chr7  143073814      144395169     NR_015421     LOC154761
77   chr7  143073814      144395169     NR_033897     EPHA1-AS1
78   chr7  143073814      144395169     NR_033942     ARHGEF34P
79   chr7  143073814      144395169     NR_106952       MIR6892
80   chr7  143073814      144395169     NR_110549       TCAF2P1
82   chr7  143073814      144395169     NR_126022  LOC101928605
83   chr7  143073814      144395169     NR_126023     OR2A1-AS1
85   chr8  103936884      104069309     NM_001695      ATP6V1C1
86   chr8  103936884      104069309     NR_126339     AZIN1-AS1

[64 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   59426993       59689434  NM_001005324        OR10V1
1   chr11   59426993       59689434     NM_001062          TCN1
2   chr11   59426993       59689434  NM_001178040          STX3
3   chr11   59426993       59689434     NM_005142           GIF
4   chr11   59426993       59689434     NM_017840        MRPL16
5   chr11   59426993       59689434     NM_152716         PATL1
6   chr11   59426993       59689434     NR_045005       OR10V2P
7   chr11   89061160       89254613  NM_001143837          NOX4
13  chr16   16416265       16518864  NM_001282511        NPIPA8
14  chr16   16416265       16518864     NR_036447        PKD1P1
15  chr16   16416265       16518864     NR_103772  LOC100288162
16  chr16   16416265       16518864     NR_106766     MIR6511A1
17  chr16   16416265       16518864     NR_106971     MIR6511A4
18  chr16   16416265       16518864     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67951567       68616098  NM_001127384        CTNNA3
2   chr11   55782594       56186876  NM_001001921        OR5AS1
3   chr11   55782594       56186876  NM_001002907         OR8K1
4   chr11   55782594       56186876  NM_001003750         OR8I2
5   chr11   55782594       56186876  NM_001004058         OR8K5
6   chr11   55782594       56186876  NM_001004064         OR8J3
7   chr11   55782594       56186876  NM_001004744         OR5R1
8   chr11   55782594       56186876  NM_001004745         OR5T1
9   chr11   55782594       56186876  NM_001004746         OR5T2
10  chr11   55782594       56186876  NM_001004747         OR5T3
11  chr11   55782594       56186876  NM_001005199         OR8H1
12  chr11   55782594       56186876  NM_001005200         OR8H2
13  chr11   55782594       56186876  NM_001005201         OR8H3
14  chr11   55782594       56186876  NM_001005202         OR8K3
15  chr11   55782594       56186876  NM_001005204         OR8U1
16  chr11   55782594       56186876  NM_001005205         OR8J1
17  chr11   55782594       56186876  NM_001005492         OR5J2
18  chr11   55782594       56186876  NM_001013356         OR8U8
19  chr16   18155743       19012378  NM_001004060         NOMO2
20  chr16   18155743       19012378     NM_001019        RPS15A
21  chr16   18155743       19012378  NM_001160364          TMC7
22  chr16   18155743       19012378  NM_001282511        NPIPA8
24  chr16   18155743       19012378  NM_001313858       ARL6IP1
26  chr16   18155743       19012378     NM_015092          SMG1
28  chr16   18155743       19012378     NR_003569       ABCC6P1
29  chr16   18155743       19012378     NR_036140     MIR3179-1
30  chr16   18155743       19012378     NR_036142     MIR3180-2
31  chr16   18155743       19012378     NR_036144     MIR3180-3
32  chr16   18155743       19012378     NR_037442     MIR3670-1
33  chr16   18155743       19012378     NR_103772  LOC100288162
34  chr16   18155743       19012378     NR_106971     MIR6511A4
35  chr16   18155743       19012378     NR_107060     MIR6770-2
36  chr22   19888150       20014246     NM_000754          COMT
39  chr22   19888150       20014246  NM_001282512        TXNRD2
40  chr22   19888150       20014246  NM_001283116        TANGO2
43  chr22   19888150       20014246     NM_001670         ARVCF
46  chr22   19888150       20014246     NR_039918       MIR4761
47   chr6   38014420       38159850  NM_001172418         BTBD9
48   chr6   38014420       38159850     NM_021943        ZFAND3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245009589      245520139  NM_001143943        EFCAB2
2    chr1  245009589      245520139     NM_004501        HNRNPU
3    chr1  245009589      245520139     NM_018012        KIF26B
5    chr1  245009589      245520139     NR_111907  LOC101928068
6    chr1  245009589      245520139     NR_132782      SNORA100
7   chr14   21926146       22157925  NM_001001912         OR4E2
8   chr14   21926146       22157925  NM_001005465        OR10G3
9   chr14   21926146       22157925  NM_001005466        OR10G2
10  chr14   21926146       22157925  NM_001163380         RAB2B
11  chr14   21926146       22157925  NM_001303523          TOX4
12  chr14   21926146       22157925  NM_001317107         OR4E1
13  chr14   21926146       22157925     NM_019852        METTL3
15  chr14   21926146       22157925     NR_111966         SALL2
17  chr16   29477219       29739322  NM_001030288           SPN
18  chr16   29477219       29739322  NM_001318249          QPRT
20  chr16   29477219       29739322     NR_002556     LOC388242
21  chr16   29477219       29739322     NR_049833     MIR3680-2
22  chr16   29477219       29739322     NR_135305        SMG1P2
24   chr3   80421256       81089231     NR_132411     LOC728290
25   chr4    8997038        9360364  NM_001242326      USP17L25
32   chr4    8997038        9360364  NM_001256852      USP17L10
33   chr4    8997038        9360364  NM_001256853      USP17L12
35   chr4    8997038        9360364  NM_001256854      USP17L11
38   chr4    8997038        9360364  NM_001256855      USP17L13
39   chr4    8997038        9360364  NM_001256857      USP17L17
40   chr4    8997038        9360364  NM_001256860      USP17L19
41   chr4    8997038        9360364  NM_001256861      USP17L20
42   chr4    8997038        9360364  NM_001256894      USP17L15
43   chr4    8997038        9360364     NR_046416      USP17L9P
44   chr4  125312014      126031171  NM_001167882       ANKRD50
46   chr4  125312014      126031171     NR_110838  LOC101927087,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21755347       21883434  NM_001170629          CHD8
1   chr14   21755347       21883434     NM_007192       SUPT16H
2   chr14   21755347       21883434     NM_020366       RPGRIP1
4   chr14   21755347       21883434     NR_002916        SNORD8
5   chr14   21755347       21883434     NR_003029        SNORD9
6   chr16   21503945       21752340  NM_001077180        METTL9
7   chr16   21503945       21752340  NM_001161683          OTOA
9   chr16   21503945       21752340     NM_005849         IGSF6
12  chr16   21503945       21752340     NR_002594      SLC7A5P2
13  chr16   21503945       21752340     NR_027155        SMG1P3
14  chr16   21503945       21752340     NR_049833     MIR3680-2
15  chr16   21503945       21752340     NR_110930  LOC101927814
16   chr5   17737163       17848179     NR_134286     LOC646241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68543733       68695796  NM_001127384        CTNNA3
2   chr10   68543733       68695796     NM_178011        LRRTM3
3   chr10   68543733       68695796     NR_111911  LOC101928961
4   chr15   28142958       29561079     NM_000275          OCA2
5   chr15   28142958       29561079  NM_001130414         APBA2
6   chr15   28142958       29561079  NM_001282468       GOLGA8M
8   chr15   28142958       29561079     NM_004667         HERC2
9   chr15   28142958       29561079     NM_015307      FAM189A1
10  chr15   28142958       29561079     NM_138704        NSMCE3
11  chr15   28142958       29561079     NR_026589       WHAMMP2
12  chr15   28142958       29561079     NR_033351       GOLGA8F
14  chr15   28142958       29561079     NR_033353       GOLGA8G
16  chr15   28142958       29561079     NR_036443       HERC2P9
17  chr15   28142958       29561079     NR_036475  LOC100289656
18  chr15   28142958       29561079     NR_037599     PDCD6IPP2
19  chr15   28142958       29561079     NR_039734     MIR4509-3
21  chr15   28142958       29561079     NR_047567     GOLGA6L7P
22  chr17    3822586        4021240     NM_015113         ZZEF1
23  chr17    3822586        4021240     NM_174955        ATP2A3
24   chr2   75853721       77204079  NM_001201334         GCFC2
26   chr2   75853721       77204079  NM_001330370        LRRTM4
28   chr2   75853721       77204079     NM_014763        MRPL19
29   chr2  133583527      133787539     NM_207363        NCKAP5
30   chr2  133583527      133787539     NR_135572  LOC101928185
31   chr5  127819108      127937480     NM_001999          FBN2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244970642      245217599  NM_001143943        EFCAB2
2    chr1  244970642      245217599  NM_001312871         COX20
4    chr1  244970642      245217599     NM_004501        HNRNPU
7    chr1  244970642      245217599     NR_111907  LOC101928068
8    chr1  244970642      245217599     NR_132782      SNORA100
9   chr14   21675772       21847537     NM_007192       SUPT16H
10  chr14   21675772       21847537     NM_020366       RPGRIP1
11  chr14   21675772       21847537     NM_031314        HNRNPC
12  chr14   21786326       23214825  NM_001001912         OR4E2
13  chr14   21786326       23214825  NM_001005465        OR10G3
14  chr14   21786326       23214825  NM_001005466        OR10G2
15  chr14   21786326       23214825  NM_001163380         RAB2B
16  chr14   21786326       23214825  NM_001170629          CHD8
17  chr14   21786326       23214825  NM_001303523          TOX4
18  chr14   21786326       23214825  NM_001317107         OR4E1
19  chr14   21786326       23214825     NM_001344          DAD1
20  chr14   21786326       23214825     NM_007192       SUPT16H
21  chr14   21786326       23214825     NM_019852        METTL3
22  chr14   21786326       23214825     NM_020366       RPGRIP1
24  chr14   21786326       23214825     NM_022060         ABHD4
26  chr14   21786326       23214825     NR_002916        SNORD8
27  chr14   21786326       23214825     NR_003029        SNORD9
28  chr14   21786326       23214825     NR_111966         SALL2
30   chr8   58125238       58237849     NR_026772     LINC00588
31   chr8   58125238       58237849     NR_038235     LINC01606
32   chr8   58125238       58237849     NR_038874     LOC286177,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102363303      102645706     NR_110211         OLFM3
1    chr1  143620880      143772469  NM_001123068       PPIAL4G
2    chr1  143620880      143772469     NR_104014     LINC01138
3    chr1  143620880      143772469     NR_106967       MIR6077
4    chr1  143620880      143772469     NR_111930  LOC100132057
5   chr11    7636038        7777617  NM_001256568       PPFIBP2
7   chr11    7636038        7777617  NM_001302826        CYB5R2
11  chr11    7636038        7777617     NM_198185         OVCH2
12  chr15   30276872       30379841  NM_001282472       GOLGA8J
13  chr20   14655105       15050553     NM_080676       MACROD2
14  chr20   14655105       15050553     NR_037841   MACROD2-AS1
16   chr3  196806294      197191518  NM_001204386          DLG1
19   chr3  196806294      197191518     NR_038289      DLG1-AS1
20   chr3  196806294      197191518     NR_039960       MIR4797
21   chr7   56981459       57394575     NM_033273        ZNF479
22   chr7   56981459       57394575     NR_030766       GUSBP10
23   chr7   56981459       57394575     NR_036246     MIR4283-1
24   chr7   56981459       57394575     NR_136269  LOC105375297,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   89080391       89534364  NM_001143837       NOX4
1   chr11   89080391       89534364  NM_001271942     TRIM77
6   chr11   89080391       89534364     NM_020358     TRIM49
7   chr11   89080391       89534364     NM_153696     FOLH1B
9   chr14   21903450       22099505  NM_001005465     OR10G3
10  chr14   21903450       22099505  NM_001163380      RAB2B
11  chr14   21903450       22099505  NM_001303523       TOX4
12  chr14   21903450       22099505     NM_019852     METTL3
13  chr14   21903450       22099505     NM_020920       CHD8
15  chr14   21903450       22099505     NR_111966      SALL2
17   chr8     138057         241724  NM_001042415     ZNF596
22   chr8     138057         241724     NR_003572  RPL23AP53
23   chr9   80053473       80169965     NM_004297      GNA14
24   chr9   80053473       80169965     NR_121184  GNA14-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   54227639       54333812     NR_120641     LINC01468
1   chr10   68000033       68152906  NM_001127384        CTNNA3
3   chr14   21766651       22298101  NM_001001912         OR4E2
4   chr14   21766651       22298101  NM_001005465        OR10G3
5   chr14   21766651       22298101  NM_001005466        OR10G2
6   chr14   21766651       22298101  NM_001163380         RAB2B
7   chr14   21766651       22298101  NM_001170629          CHD8
8   chr14   21766651       22298101  NM_001303523          TOX4
9   chr14   21766651       22298101  NM_001317107         OR4E1
10  chr14   21766651       22298101     NM_007192       SUPT16H
11  chr14   21766651       22298101     NM_019852        METTL3
12  chr14   21766651       22298101     NM_020366       RPGRIP1
15  chr14   21766651       22298101     NR_002916        SNORD8
16  chr14   21766651       22298101     NR_003029        SNORD9
17  chr14   21766651       22298101     NR_111966         SALL2
19  chr16   21557463       21686437  NM_001077180        METTL9
21  chr16   21557463       21686437     NM_005849         IGSF6
22  chr16   21557463       21686437     NR_110930  LOC101927814
23   chr2   51269558       51427593     NR_135237     LOC730100
24   chr5   12452676       12668751     NR_033383     LINC01194
25   chr5   12452676       12668751     NR_039659       MIR4454
26   chr7  121602180      121752485  NM_001206838        PTPRZ1
27   chr7  121602180      121752485     NM_005763          AASS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21843839       22062314  NM_001005465        OR10G3
1   chr14   21843839       22062314  NM_001163380         RAB2B
2   chr14   21843839       22062314  NM_001170629          CHD8
3   chr14   21843839       22062314  NM_001303523          TOX4
4   chr14   21843839       22062314     NM_007192       SUPT16H
5   chr14   21843839       22062314     NM_019852        METTL3
8   chr14   21843839       22062314     NR_002916        SNORD8
9   chr14   21843839       22062314     NR_003029        SNORD9
10  chr14   21843839       22062314     NR_111966         SALL2
12   chr2   35481789       35714517     NR_039629      MIR548AD
13   chr4   65550489       65861693     NR_033976     LOC401134
14   chr5   17387633       17505114     NR_134270  LOC102723526
16   chr5   17387633       17505114     NR_134273  LOC101929544
19   chr6  119770343      120465798     NR_036098       MIR3144
20   chr6  119770343      120465798     NR_046100     LOC285762
21   chr6  119770343      120465798     NR_134600  LOC105377975
22   chr9   66624861       67034157     NR_046175     LOC286297
23   chr9   66624861       67034157     NR_121570  LOC101928381
24   chr9   66624861       67034157     NR_135597  LOC101928195
25   chr9   66624861       67034157     NR_136299  LOC101929583,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89688673       89831397  NM_001136486        TRIM64
1   chr11   89688673       89831397  NM_001143975        UBTFL1
2   chr11   89688673       89831397  NM_001195234       TRIM49C
3   chr11   89688673       89831397     NR_028346      TRIM53AP
4   chr16   16389459       16560470  NM_001282511        NPIPA8
5   chr16   16389459       16560470     NR_036140     MIR3179-1
6   chr16   16389459       16560470     NR_036141     MIR3180-1
7   chr16   16389459       16560470     NR_036142     MIR3180-2
8   chr16   16389459       16560470     NR_036447        PKD1P1
9   chr16   16389459       16560470     NR_103772  LOC100288162
10  chr16   16389459       16560470     NR_106766     MIR6511A1
11  chr16   16389459       16560470     NR_106971     MIR6511A4
12  chr16   16389459       16560470     NR_107060     MIR6770-2
13  chr16   16389459       16560470     NR_128713     MIR3670-4
14   chr7   64080039       64231422  NM_001282360        ZNF107
16   chr7   64080039       64231422     NR_106898       MIR6839
17   chr7  110706768      110833222  NM_001099658         LRRN3
18   chr7  110706768      110833222  NM_001244606        IMMP2L
20   chr7  146513002      146774600     NM_014141       CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   27587202       27738729  NM_001034842       PTCHD3
1   chr10   27587202       27738729     NR_138082      ARMC4P1
2   chr13   63281554       63599394     NR_047029    LINC00448
5   chr14   21944749       22199718  NM_001001912        OR4E2
6   chr14   21944749       22199718  NM_001005465       OR10G3
7   chr14   21944749       22199718  NM_001005466       OR10G2
8   chr14   21944749       22199718  NM_001163380        RAB2B
9   chr14   21944749       22199718  NM_001303523         TOX4
10  chr14   21944749       22199718  NM_001317107        OR4E1
11  chr14   21944749       22199718     NM_019852       METTL3
13  chr14   21944749       22199718     NR_111966        SALL2
15  chr14   42077190       42324678  NM_001346175        LRFN5
16  chr15   30233610       30469975  NM_001282472      GOLGA8J
17  chr15   30233610       30469975  NM_001301025         TJP1
18  chr15   30233610       30469975     NR_026859       ULK4P3
19  chr15   30233610       30469975     NR_033933      GOLGA8T
20  chr20   14729557       14936430     NM_080676      MACROD2
21  chr20   14729557       14936430     NR_037841  MACROD2-AS1
23  chr20   21985147       22120911     NR_038394    LINC01432
24   chr4   71368586       71468650  NM_001286731         AMTN
25   chr4   71368586       71468650     NM_016519         AMBN
26   chr9    6637754        8875090     NM_000170         GLDC
27   chr9    6637754        8875090  NM_001146695        KDM4C
31   chr9    6637754        8875090  NM_001318058      TMEM261
32   chr9    6637754        8875090     NM_002839        PTPRD
34   chr9    6637754        8875090     NR_121599    PTPRD-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   80054722       82549651     NM_000369          TSHR
1   chr14   80054722       82549651     NM_000793          DIO2
4   chr14   80054722       82549651  NM_001244984         SEL1L
5   chr14   80054722       82549651  NM_001256430         STON2
6   chr14   80054722       82549651  NM_001272020         NRXN3
7   chr14   80054722       82549651  NM_001278940        GTF2A1
12  chr14   80054722       82549651     NM_152446        CEP128
14  chr14   80054722       82549651     NR_003021       SNORA79
15  chr14   80054722       82549651     NR_038355      DIO2-AS1
17  chr14   80054722       82549651     NR_109999  LOC100506700
18  chr14   80054722       82549651     NR_110074     LINC01467
19  chr14   80054722       82549651     NR_135252  LOC101928504
20  chr22   19017097       19241196  NM_001184781         DGCR2
21  chr22   19017097       19241196  NM_001256534       SLC25A1
22  chr22   19017097       19241196     NM_001835        CLTCL1
23  chr22   19017097       19241196     NM_005315          GSC2
25  chr22   19017097       19241196     NM_022719        DGCR14
26  chr22   19017097       19241196     NM_053006         TSSK2
27  chr22   19017097       19241196     NR_024157        DGCR11
28  chr22   19017097       19241196     NR_103767     LINC01311
29  chr22   19017097       19241196     NR_110533         DGCR5,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   48290084       48398177  NM_001004702     OR4C3
1   chr11   48290084       48398177  NM_001004725     OR4S1
2   chr11   48290084       48398177  NM_001005513    OR4C45
3   chr11  102718674      103151536  NM_001080463   DYNC2H1
4   chr11  102718674      103151536  NM_001318739   DCUN1D5
5   chr11  102718674      103151536     NM_002426     MMP12
6   chr11  102718674      103151536     NM_002427     MMP13
7   chr22   17260201       17536707  NM_001037814      GAB4
8   chr22   17260201       17536707     NM_175878      XKR3
9   chr22   17260201       17536707     NR_003607   HSFY1P1
10  chr22   17260201       17536707     NR_015352     CECR7,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1  143737655      143846738  NM_001123068      PPIAL4G
1   chr1  143737655      143846738     NR_104014    LINC01138
2   chr1  190034328      190324204  NM_001317188       BRINP3
4  chr20   14790675       14924508     NM_080676      MACROD2
5  chr20   14790675       14924508     NR_037841  MACROD2-AS1
7   chr3     834121        1711576  NM_001289081        CNTN6
8   chr3     834121        1711576     NR_110118    LINC01266
9   chr9   22410772       22525936     NM_022160       DMRTA1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr10   54180768       54806895     NM_000242           MBL2
1   chr10   54180768       54806895     NR_120641      LINC01468
3   chr16   21742370       21895243  NM_001161683           OTOA
4   chr16   21742370       21895243  NM_001310148         NPIPB4
7   chr16   21742370       21895243     NR_003370         RRN3P1
8   chr16   29487433       29998646  NM_001030288            SPN
9   chr16   29487433       29998646  NM_001083613        TMEM219
10  chr16   29487433       29998646  NM_001114099         SEZ6L2
11  chr16   29487433       29998646  NM_001256269          KIF22
13  chr16   29487433       29998646  NM_001256443          PRRT2
14  chr16   29487433       29998646  NM_001276275            MAZ
15  chr16   29487433       29998646  NM_001286585          CDIPT
16  chr16   29487433       29998646  NM_001293204            MVP
17  chr16   29487433       29998646  NM_001318249           QPRT
20  chr16   29487433       29998646     NM_004783          TAOK2
23  chr16   29487433       29998646     NM_024516          PAGR1
24  chr16   29487433       29998646     NM_152338           ZG16
25  chr16   29487433       29998646     NM_175900       C16orf54
26  chr16   29487433       29998646     NM_178863         KCTD13
27  chr16   29487433       29998646     NM_181718         ASPHD1
28  chr16   29487433       29998646     NR_015396      CDIPT-AS1
30  chr16   29487433       29998646     NR_049833      MIR3680-2
31  chr16   29487433       29998646     NR_135305         SMG1P2
33  chr19    9393437        9552779  NM_001172650  ZNF559-ZNF177
34  chr19    9393437        9552779  NM_001172651         ZNF177
35  chr19    9393437        9552779  NM_001202406         ZNF559
38  chr19    9393437        9552779  NM_001271314         ZNF266
40  chr19    9393437        9552779     NM_198535         ZNF699
41   chr3   59231825       60625134  NM_001320899           FHIT
43   chr3   59231825       60625134     NR_128708       MIR548BB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  108544377      109550574     NM_004398         DDX10
1   chr11  108544377      109550574     NM_207645      C11orf87
2   chr14   21780174       21891030  NM_001170629          CHD8
3   chr14   21780174       21891030     NM_007192       SUPT16H
4   chr14   21780174       21891030     NM_020366       RPGRIP1
6   chr14   21780174       21891030     NR_002916        SNORD8
7   chr14   21780174       21891030     NR_003029        SNORD9
8   chr14   21855572       21984361  NM_001163380         RAB2B
9   chr14   21855572       21984361  NM_001170629          CHD8
10  chr14   21855572       21984361  NM_001303523          TOX4
11  chr14   21855572       21984361     NM_019852        METTL3
14  chr14   21855572       21984361     NR_002916        SNORD8
15  chr14   21855572       21984361     NR_003029        SNORD9
16  chr20   14772746       15082381     NM_080676       MACROD2
17  chr20   14772746       15082381     NR_037841   MACROD2-AS1
19   chr5   22773055       22962907     NM_004061         CDH12
20   chr6   90209481       90663454  NM_001137667      CASP8AP2
21   chr6   90209481       90663454  NM_001170794         BACH2
22   chr6   90209481       90663454  NM_001242809        ANKRD6
25   chr6   90209481       90663454     NM_014611          MDN1
26   chr6   90209481       90663454     NM_020466         LYRM2
27   chr6   90209481       90663454     NM_032602         GJA10
29   chr6   90209481       90663454     NR_111915  LOC101929057
30   chr8   16494804       16925759     NM_019851         FGF20
31   chr8   16494804       16925759     NM_181723         MICU3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   27045228       27181563     NM_002515         NOVA1
2   chr15   79745702       79848627     NM_015206      KIAA1024
3   chr22   17208689       17672176  NM_001037814          GAB4
4   chr22   17208689       17672176  NM_001163079         CECR6
5   chr22   17208689       17672176  NM_001282227         CECR1
7   chr22   17208689       17672176  NM_001289905        IL17RA
8   chr22   17208689       17672176     NM_017829         CECR5
11  chr22   17208689       17672176     NM_175878          XKR3
13  chr22   17208689       17672176     NR_003607       HSFY1P1
14  chr22   17208689       17672176     NR_015352         CECR7
15  chr22   17208689       17672176     NR_024482     CECR5-AS1
16  chr22   17208689       17672176     NR_103793  LOC100996342
17  chr22   17208689       17672176     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21774784       22025520  NM_001163380         RAB2B
1   chr14   21774784       22025520  NM_001170629          CHD8
2   chr14   21774784       22025520  NM_001303523          TOX4
3   chr14   21774784       22025520     NM_007192       SUPT16H
4   chr14   21774784       22025520     NM_019852        METTL3
5   chr14   21774784       22025520     NM_020366       RPGRIP1
8   chr14   21774784       22025520     NR_002916        SNORD8
9   chr14   21774784       22025520     NR_003029        SNORD9
10  chr14   21774784       22025520     NR_111966         SALL2
12   chr3   60421157       60815103  NM_001320899          FHIT
13   chr3   60421157       60815103     NR_128708      MIR548BB
14   chr3  155970266      156115395  NM_001308217        KCNAB1
19   chr9   41907552       42025568     NR_003670        FGF7P3
20   chr9   41907552       42025568     NR_015363         GLIDR
23   chr9   41907552       42025568     NR_126048  LOC102724238
24   chr9   41907552       42025568     NR_126049     LOC554249
25   chr9  102154104      102651960     NM_173199         NR4A3
27   chr9  102154104      102651960     NR_038853     STX17-AS1
28   chr9  102154104      102651960     NR_109802  LOC101928438,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102394093      102566976     NR_110211         OLFM3
1    chr1  102391448      102492113     NR_110211         OLFM3
2   chr15   26970250       27073410  NM_001278631        GABRB3
4   chr16   18539651       18672551  NM_001004060         NOMO2
5   chr16   18539651       18672551     NR_003569       ABCC6P1
6   chr16   21523813       21667195  NM_001077180        METTL9
8   chr16   21523813       21667195     NM_005849         IGSF6
9   chr16   21523813       21667195     NR_002594      SLC7A5P2
10  chr16   21523813       21667195     NR_110930  LOC101927814
11  chr22   20077119       20275773  NM_001190326         DGCR8
12  chr22   20077119       20275773  NM_001243537       CCDC188
13  chr22   20077119       20275773  NM_001278639        RANBP1
16  chr22   20077119       20275773     NM_013373        ZDHHC8
17  chr22   20077119       20275773     NM_022727        TRMT2A
18  chr22   20077119       20275773     NM_023004         RTN4R
19  chr22   20077119       20275773     NR_026919     LINC00896
20  chr22   20077119       20275773     NR_031618       MIR1286
21  chr22   20077119       20275773     NR_038460     LOC284865
22  chr22   20077119       20275773     NR_106874       MIR6816
23   chr6   97420273       97546874  NM_001286251        KLHL32
27   chr6   97420273       97546874     NR_031679      MIR548H3
28   chr7  110559096      110684171  NM_001244606        IMMP2L
30   chr9    9968336       10717236     NM_002839         PTPRD
31   chr9    9968336       10717236     NR_110696     PTPRD-AS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21756471       21875557  NM_001170629          CHD8
1   chr14   21756471       21875557     NM_007192       SUPT16H
2   chr14   21756471       21875557     NM_020366       RPGRIP1
4   chr14   21756471       21875557     NR_002916        SNORD8
5   chr14   21756471       21875557     NR_003029        SNORD9
6   chr16   16347537       16481035  NM_001004067         NOMO3
7   chr16   16347537       16481035  NM_001282511        NPIPA8
8   chr16   16347537       16481035     NR_036140     MIR3179-1
9   chr16   16347537       16481035     NR_036141     MIR3180-1
10  chr16   16347537       16481035     NR_036142     MIR3180-2
11  chr16   16347537       16481035     NR_036447        PKD1P1
12  chr16   16347537       16481035     NR_103772  LOC100288162
13  chr16   16347537       16481035     NR_106766     MIR6511A1
14  chr16   16347537       16481035     NR_106971     MIR6511A4
15  chr16   16347537       16481035     NR_107060     MIR6770-2
16  chr16   16347537       16481035     NR_128713     MIR3670-4
17  chr18   24559166       24705645  NM_001256316         CHST9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17205102       17910816  NM_001037814          GAB4
1   chr22   17205102       17910816  NM_001163079         CECR6
2   chr22   17205102       17910816  NM_001282227         CECR1
4   chr22   17205102       17910816  NM_001289905        IL17RA
5   chr22   17205102       17910816  NM_001290046         CECR2
6   chr22   17205102       17910816     NM_017829         CECR5
9   chr22   17205102       17910816     NM_175878          XKR3
11  chr22   17205102       17910816     NR_003607       HSFY1P1
12  chr22   17205102       17910816     NR_015352         CECR7
13  chr22   17205102       17910816     NR_024482     CECR5-AS1
14  chr22   17205102       17910816     NR_038398         CECR3
15  chr22   17205102       17910816     NR_103793  LOC100996342
16  chr22   17205102       17910816     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27602296       27790958  NM_001034842        PTCHD3
1   chr10   27602296       27790958     NR_138082       ARMC4P1
2   chr10   68063885       68246704  NM_001127384        CTNNA3
4   chr16   18401623       18512958  NM_001004060         NOMO2
5   chr16   18401623       18512958  NM_001282511        NPIPA8
6   chr16   18401623       18512958     NR_036140     MIR3179-1
7   chr16   18401623       18512958     NR_036142     MIR3180-2
8   chr16   18401623       18512958     NR_036144     MIR3180-3
9   chr16   18401623       18512958     NR_037442     MIR3670-1
10  chr16   18401623       18512958     NR_103772  LOC100288162
11  chr16   18401623       18512958     NR_106971     MIR6511A4
12  chr16   18401623       18512958     NR_107060     MIR6770-2
13   chr7  110626982      110771997  NM_001099658         LRRN3
14   chr7  110626982      110771997  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143543874      143703177     NR_106967       MIR6077
1    chr1  143543874      143703177     NR_111930  LOC100132057
2   chr16   18284259       18873337  NM_001004060         NOMO2
3   chr16   18284259       18873337     NM_001019        RPS15A
4   chr16   18284259       18873337  NM_001282511        NPIPA8
5   chr16   18284259       18873337  NM_001313858       ARL6IP1
6   chr16   18284259       18873337     NM_015092          SMG1
8   chr16   18284259       18873337     NR_003569       ABCC6P1
9   chr16   18284259       18873337     NR_036140     MIR3179-1
10  chr16   18284259       18873337     NR_036142     MIR3180-2
11  chr16   18284259       18873337     NR_036144     MIR3180-3
12  chr16   18284259       18873337     NR_037442     MIR3670-1
13  chr16   18284259       18873337     NR_103772  LOC100288162
14  chr16   18284259       18873337     NR_106971     MIR6511A4
15  chr16   18284259       18873337     NR_107060     MIR6770-2
16   chr2   25205060       25331156  NM_001319099         EFR3B
18   chr2   25205060       25331156     NR_034113   DNAJC27-AS1
19   chr3   60331902       60447113  NM_001320899          FHIT
20   chr4  135208834      136832790     NR_103762     LINC00613,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11     668889         814184     NM_001004         RPLP2
1   chr11     668889         814184  NM_001042463        TMEM80
2   chr11     668889         814184  NM_001191060      SLC25A22
5   chr11     668889         814184  NM_001293167         PANO1
6   chr11     668889         814184  NM_001318824         PDDC1
7   chr11     668889         814184     NM_006755        TALDO1
8   chr11     668889         814184     NM_016564         CEND1
9   chr11     668889         814184     NM_021008         DEAF1
10  chr11     668889         814184     NM_022772        EPS8L2
12  chr11     668889         814184     NM_145886         PIDD1
13  chr11     668889         814184     NR_002585       SNORA52
14  chr11     668889         814184     NR_126342     LOC171391
15   chr2  181821466      182131314  NM_001278554        UBE2E3
18   chr2  181821466      182131314     NR_130784  LOC101927156
19   chr2  186476447      186760990     NM_173651         FSIP2
20   chr2  186476447      186760990     NR_110214  LOC101927196
23   chr2  186476447      186760990     NR_144453     FSIP2-AS1
25   chr3  176561245      176836557  NM_001321193       TBL1XR1
27   chr6  162515118      162740866     NM_013988         PARK2
28   chr7  110642354      110746970  NM_001099658         LRRN3
29   chr7  110642354      110746970  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12844620       13054460  NM_001009611    PRAMEF4
1    chr1   12844620       13054460  NM_001010889    PRAMEF6
2    chr1   12844620       13054460  NM_001010890    PRAMEF9
3    chr1   12844620       13054460  NM_001012276    PRAMEF8
4    chr1   12844620       13054460  NM_001013631   HNRNPCL1
5    chr1   12844620       13054460  NM_001099850   PRAMEF18
6    chr1   12844620       13054460  NM_001100631   PRAMEF22
7    chr1   12844620       13054460  NM_001146181   HNRNPCL3
8    chr1   12844620       13054460  NM_001146344   PRAMEF11
9    chr1   12844620       13054460  NM_001294139    PRAMEF1
10   chr1   12844620       13054460  NM_001302551   HNRNPCL4
11   chr1   12844620       13054460  NM_001306072   PRAMEF26
12   chr1   12844620       13054460  NM_001310134   PRAMEF25
14   chr1   12844620       13054460     NM_023014    PRAMEF2
15  chr14   21660533       22355988  NM_001001912      OR4E2
16  chr14   21660533       22355988  NM_001005465     OR10G3
17  chr14   21660533       22355988  NM_001005466     OR10G2
18  chr14   21660533       22355988  NM_001163380      RAB2B
19  chr14   21660533       22355988  NM_001170629       CHD8
20  chr14   21660533       22355988  NM_001303523       TOX4
21  chr14   21660533       22355988  NM_001317107      OR4E1
22  chr14   21660533       22355988     NM_007192    SUPT16H
23  chr14   21660533       22355988     NM_019852     METTL3
24  chr14   21660533       22355988     NM_020366    RPGRIP1
26  chr14   21660533       22355988     NM_031314     HNRNPC
28  chr14   21660533       22355988     NR_002916     SNORD8
29  chr14   21660533       22355988     NR_003029     SNORD9
30  chr14   21660533       22355988     NR_038970  LINC00641
32  chr14   21660533       22355988     NR_111966      SALL2
34   chr4    8640574        9509431  NM_001040071  LOC650293
35   chr4    8640574        9509431  NM_001040448    DEFB131
36   chr4    8640574        9509431  NM_001242326   USP17L25
44   chr4    8640574        9509431  NM_001256852   USP17L10
45   chr4    8640574        9509431  NM_001256853   USP17L12
47   chr4    8640574        9509431  NM_001256854   USP17L11
50   chr4    8640574        9509431  NM_001256855   USP17L13
51   chr4    8640574        9509431  NM_001256857   USP17L17
52   chr4    8640574        9509431  NM_001256860   USP17L19
53   chr4    8640574        9509431  NM_001256861   USP17L20
54   chr4    8640574        9509431  NM_001256894   USP17L15
55   chr4    8640574        9509431  NM_001306142       HMX1
57   chr4    8640574        9509431     NR_027279   USP17L6P
58   chr4    8640574        9509431     NR_046416   USP17L9P
59   chr6  162887942      163022668     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143690507      143912222  NM_001123068       PPIAL4G
1    chr1  143690507      143912222  NM_001287385        FAM72C
2    chr1  143690507      143912222  NM_001345942        FAM72D
6    chr1  143690507      143912222     NR_104014     LINC01138
7    chr1  143690507      143912222     NR_111930  LOC100132057
9   chr15   41633789       41742176  NM_001243142        NUSAP1
10  chr15   41633789       41742176     NM_015138          RTF1
11  chr15   41633789       41742176     NR_045620       NDUFAF1
12   chr2   35429282       36178182     NR_039629      MIR548AD
13  chr21   22363656       22736230     NM_004540         NCAM2
14   chr4   69312620       69516879     NM_001076       UGT2B15
15   chr4   69312620       69516879     NM_001077       UGT2B17
16   chr4   69312620       69516879     NM_014058     TMPRSS11E
17   chr6  162522992      162677570     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21624393       21861842  NM_001170629          CHD8
1   chr14   21624393       21861842     NM_007192       SUPT16H
2   chr14   21624393       21861842     NM_020366       RPGRIP1
4   chr14   21624393       21861842     NM_031314        HNRNPC
5   chr14   21624393       21861842     NR_003029        SNORD9
6   chr14   21624393       21861842     NR_038970     LINC00641
8   chr20   14732641       15185352  NM_001033087       MACROD2
10  chr20   14732641       15185352     NR_037841   MACROD2-AS1
12   chr6   20959322       21571395     NM_017774        CDKAL1
13   chr6   20959322       21571395     NR_103790     LINC00581
14   chr9   41574264       42580461  NM_001012419     ANKRD20A3
15   chr9   41574264       42580461  NM_001012421     ANKRD20A2
16   chr9   41574264       42580461     NR_003528       ZNF658B
17   chr9   41574264       42580461     NR_003670        FGF7P3
18   chr9   41574264       42580461     NR_015363         GLIDR
19   chr9   41574264       42580461     NR_121572      GXYLT1P3
22   chr9   41574264       42580461     NR_126048  LOC102724238
23   chr9   41574264       42580461     NR_126049     LOC554249
24   chr9   41574264       42580461     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21680713       21852028  NM_001161683          OTOA
1   chr16   21680713       21852028  NM_001310148        NPIPB4
4   chr16   21680713       21852028     NR_003370        RRN3P1
5    chr2   78305084       79594747  NM_001008387         REG3G
6    chr2   78305084       79594747     NM_002580         REG3A
7    chr2   78305084       79594747     NM_002909         REG1A
8    chr2   78305084       79594747     NM_006507         REG1B
10   chr2   78305084       79594747     NR_002714        REG1CP
11   chr2   78305084       79594747     NR_110287  LOC101927948
12   chr2   78305084       79594747     NR_110288  LOC101927967
13   chr2   78305084       79594747     NR_136312  LOC105374820
14  chr20   14708802       14835792     NM_080676       MACROD2
15   chr7   16676519       17217564  NM_001159767          BZW2
16   chr7   16676519       17217564     NM_006408          AGR2
17   chr7   16676519       17217564     NM_014399       TSPAN13
18   chr7   16676519       17217564     NM_020319        ANKMY2
19   chr7   16676519       17217564     NM_176813          AGR3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21839940       23428545  NM_001001912         OR4E2
1   chr14   21839940       23428545  NM_001005465        OR10G3
2   chr14   21839940       23428545  NM_001005466        OR10G2
3   chr14   21839940       23428545  NM_001039619         PRMT5
4   chr14   21839940       23428545  NM_001126105        SLC7A7
6   chr14   21839940       23428545  NM_001163380         RAB2B
7   chr14   21839940       23428545  NM_001170629          CHD8
8   chr14   21839940       23428545  NM_001303523          TOX4
9   chr14   21839940       23428545  NM_001317107         OR4E1
10  chr14   21839940       23428545  NM_001318870        MRPL52
11  chr14   21839940       23428545  NM_001329226         LRP10
12  chr14   21839940       23428545     NM_001344          DAD1
13  chr14   21839940       23428545     NM_004995         MMP14
14  chr14   21839940       23428545     NM_005015         OXA1L
15  chr14   21839940       23428545     NM_007192       SUPT16H
16  chr14   21839940       23428545     NM_017815         HAUS4
17  chr14   21839940       23428545     NM_018107         RBM23
18  chr14   21839940       23428545     NM_019852        METTL3
20  chr14   21839940       23428545     NM_022060         ABHD4
22  chr14   21839940       23428545     NM_173527          REM2
23  chr14   21839940       23428545     NR_002916        SNORD8
24  chr14   21839940       23428545     NR_003029        SNORD9
25  chr14   21839940       23428545     NR_039856       MIR4707
27  chr14   21839940       23428545     NR_110002  LOC101926933
28  chr14   21839940       23428545     NR_111966         SALL2
30  chr14   21839940       23428545     NR_120599     PRMT5-AS1
31   chr2   97214652       97478922  NM_001115016        KANSL3
32   chr2   97214652       97478922  NM_001293083        FER1L5
33   chr2   97214652       97478922  NM_001319085        ARID5A
35   chr2   97214652       97478922  NM_001322354        LMAN2L
36   chr2   97214652       97478922     NM_020184         CNNM4
38   chr2   97214652       97478922     NR_036074       MIR3127
40   chr4  129642440      129968902  NM_001287437         JADE1
45   chr4  129642440      129968902  NM_001300897         SCLT1
49   chr4  190494949      190663976     NR_121679     LINC01262
50   chr4  190494949      190663976     NR_135513  LOC105379514,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11    6742264        7085209  NM_001004460    OR10A2
1   chr11    6742264        7085209  NM_001004489    OR2AG1
2   chr11    6742264        7085209  NM_001004490    OR2AG2
3   chr11    6742264        7085209  NM_001004684     OR2D3
4   chr11    6742264        7085209     NM_003696     OR6A2
5   chr11    6742264        7085209     NM_003700     OR2D2
6   chr11    6742264        7085209     NM_013249    ZNF214
7   chr11    6742264        7085209     NM_013250    ZNF215
8   chr11    6742264        7085209     NM_176822    NLRP14
9   chr11    6742264        7085209     NM_178168    OR10A5
10  chr11    6742264        7085209     NM_207186    OR10A4
11  chr11    6742264        7085209     NR_003945    GVINP1
12  chr11   83452568       83573027  NM_001142699      DLG2
16  chr14   21898176       22013393  NM_001163380     RAB2B
17  chr14   21898176       22013393  NM_001170629      CHD8
18  chr14   21898176       22013393  NM_001303523      TOX4
19  chr14   21898176       22013393     NM_019852    METTL3
22  chr14   21898176       22013393     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67549765       68220391  NM_001127384        CTNNA3
2   chr10   81497438       81625293     NR_029407     LOC642361
3   chr10   81497438       81625293     NR_120611    NUTM2B-AS1
6   chr16   16396115       17078886  NM_001282511        NPIPA8
7   chr16   16396115       17078886     NR_036141     MIR3180-1
8   chr16   16396115       17078886     NR_036142     MIR3180-2
9   chr16   16396115       17078886     NR_036447        PKD1P1
10  chr16   16396115       17078886     NR_103772  LOC100288162
11  chr16   16396115       17078886     NR_106766     MIR6511A1
12  chr16   16396115       17078886     NR_106971     MIR6511A4
13  chr16   16396115       17078886     NR_107060     MIR6770-2
14  chr16   16396115       17078886     NR_128713     MIR3670-4
15   chr2  109924011      110274481  NM_001099289        SH3RF3
16   chr2  109924011      110274481     NR_036224       MIR4266
17  chr20   14779595       14921599     NM_080676       MACROD2
18  chr20   14779595       14921599     NR_037841   MACROD2-AS1
20  chr22   19872233       20018102     NM_000754          COMT
23  chr22   19872233       20018102  NM_001282512        TXNRD2
24  chr22   19872233       20018102  NM_001283116        TANGO2
27  chr22   19872233       20018102     NM_001670         ARVCF
30  chr22   19872233       20018102     NR_039918       MIR4761
31   chr7   75896894       76008538  NM_001110199         SRRM3
32   chr7   75896894       76008538     NM_001540         HSPB1
33   chr7   75896894       76008538     NM_012479         YWHAG,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21767860       21929043  NM_001163380     RAB2B
1   chr14   21767860       21929043  NM_001170629      CHD8
2   chr14   21767860       21929043     NM_007192   SUPT16H
3   chr14   21767860       21929043     NM_020366   RPGRIP1
6   chr14   21767860       21929043     NR_002916    SNORD8
7   chr14   21767860       21929043     NR_003029    SNORD9
8   chr20   41037391       41228670     NM_133170     PTPRT
9   chr22   32486271       32590774     NM_000343    SLC5A1
10  chr22   32486271       32590774  NM_001010859  C22orf42
11  chr22   32486271       32590774  NM_001098527     RFPL2
16  chr22   32486271       32590774     NR_040114   AP1B1P1
17   chr4  169238404      169707715  NM_001012967    DDX60L
18   chr4  169238404      169707715  NM_001166108     PALLD
21   chr4  169238404      169707715     NM_017631     DDX60
22   chr7  110797395      111323124  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143083638      143288591     NR_110761  LOC102723769
1    chr1  177034141      177364781  NM_001286164         ASTN1
3    chr1  177034141      177364781     NM_021165        BRINP2
5    chr1  177034141      177364781     NR_126001  LOC102724661
6   chr11    7833058        7957887  NM_001004461        OR10A6
7   chr11    7833058        7957887     NM_153445         OR5P3
8   chr11    7833058        7957887     NR_027711        OR5E1P
9   chr11    7833058        7957887     NR_036678     LOC283299
10  chr15   85755644       85861334  NM_001310153      GOLGA6L3
11  chr16   18353358       18534451  NM_001004060         NOMO2
12  chr16   18353358       18534451  NM_001282511        NPIPA8
13  chr16   18353358       18534451     NR_036140     MIR3179-1
14  chr16   18353358       18534451     NR_036142     MIR3180-2
15  chr16   18353358       18534451     NR_036144     MIR3180-3
16  chr16   18353358       18534451     NR_037442     MIR3670-1
17  chr16   18353358       18534451     NR_103772  LOC100288162
18  chr16   18353358       18534451     NR_106971     MIR6511A4
19  chr16   18353358       18534451     NR_107060     MIR6770-2
20   chr9   28609133       29057104  NM_001258282        LINGO2
22   chr9   28609133       29057104     NR_030597        MIR876
23   chr9   28609133       29057104     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21899483       22002993  NM_001163380      RAB2B
1   chr14   21899483       22002993  NM_001170629       CHD8
2   chr14   21899483       22002993  NM_001303523       TOX4
3   chr14   21899483       22002993     NM_019852     METTL3
6   chr14   21899483       22002993     NR_111966      SALL2
8   chr14   42126679       42500382  NM_001346175      LRFN5
9   chr19   21839063       21970510     NM_173531     ZNF100
10  chr19   21839063       21970510     NR_024523  LOC641367,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67659284       67834708  NM_001127384        CTNNA3
2   chr15   52994008       53142609     NM_004498       ONECUT1
4   chr16   16394742       16567725  NM_001282511        NPIPA8
5   chr16   16394742       16567725     NR_036141     MIR3180-1
6   chr16   16394742       16567725     NR_036142     MIR3180-2
7   chr16   16394742       16567725     NR_036447        PKD1P1
8   chr16   16394742       16567725     NR_103772  LOC100288162
9   chr16   16394742       16567725     NR_106766     MIR6511A1
10  chr16   16394742       16567725     NR_106971     MIR6511A4
11  chr16   16394742       16567725     NR_107060     MIR6770-2
12  chr16   16394742       16567725     NR_128713     MIR3670-4
13  chr16   21486148       21724713  NM_001077180        METTL9
14  chr16   21486148       21724713  NM_001161683          OTOA
16  chr16   21486148       21724713     NM_005849         IGSF6
19  chr16   21486148       21724713     NR_002594      SLC7A5P2
20  chr16   21486148       21724713     NR_027155        SMG1P3
21  chr16   21486148       21724713     NR_049833     MIR3680-2
22  chr16   21486148       21724713     NR_110930  LOC101927814
23   chr2  153020292      153146028     NM_005843         STAM2
24  chr20   14758666       15217620  NM_001033087       MACROD2
26  chr20   14758666       15217620     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143460049      144116745  NM_001123068       PPIAL4G
1    chr1  143460049      144116745  NM_001287385        FAM72C
2    chr1  143460049      144116745  NM_001345942        FAM72D
6    chr1  143460049      144116745     NR_104014     LINC01138
7    chr1  143460049      144116745     NR_106967       MIR6077
8    chr1  143460049      144116745     NR_111930  LOC100132057
10  chr15   28532848       28640941     NM_004667         HERC2
11  chr15   28532848       28640941     NR_033351       GOLGA8F
12  chr15   28532848       28640941     NR_033353       GOLGA8G
13  chr15   30246627       31706078  NM_001039841     ARHGAP11B
14  chr15   30246627       31706078  NM_001146094          FAN1
16  chr15   30246627       31706078  NM_001243538     LOC283710
17  chr15   30246627       31706078  NM_001252020         TRPM1
20  chr15   30246627       31706078  NM_001282472       GOLGA8J
21  chr15   30246627       31706078  NM_001282484       GOLGA8R
22  chr15   30246627       31706078  NM_001282490       GOLGA8H
23  chr15   30246627       31706078  NM_001301025          TJP1
24  chr15   30246627       31706078  NM_001302461         KLF13
27  chr15   30246627       31706078     NM_017762        MTMR10
28  chr15   30246627       31706078     NM_139320      CHRFAM7A
29  chr15   30246627       31706078     NR_026771  DKFZP434L187
30  chr15   30246627       31706078     NR_026858        ULK4P1
31  chr15   30246627       31706078     NR_026859        ULK4P3
32  chr15   30246627       31706078     NR_029624        MIR211
33  chr15   30246627       31706078     NR_033933       GOLGA8T
34  chr15   30246627       31706078     NR_038253  LOC100288637
36  chr15   30246627       31706078     NR_072991      HERC2P10
37  chr15   30246627       31706078     NR_135834  LOC102725022
38   chr7  110311414      110452993  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12   97953779       98064648     NR_029678  MIR135A2
1  chr15   42687775       42821273  NM_001284306    ZNF106
3  chr15   42687775       42821273     NM_003825    SNAP23
4  chr15   42687775       42821273     NM_173087     CAPN3
7   chr7  117576857      118799722     NM_016200      LSM8
8   chr7  117576857      118799722     NM_019644    ANKRD7,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21945902       22138389  NM_001001912     OR4E2
1   chr14   21945902       22138389  NM_001005465    OR10G3
2   chr14   21945902       22138389  NM_001005466    OR10G2
3   chr14   21945902       22138389  NM_001303523      TOX4
4   chr14   21945902       22138389  NM_001317107     OR4E1
5   chr14   21945902       22138389     NM_019852    METTL3
6   chr14   21945902       22138389     NR_111966     SALL2
8    chr4   71358999       71469841  NM_001286731      AMTN
9    chr4   71358999       71469841     NM_016519      AMBN
10   chr4  121647361      122830668  NM_001128843     TNIP3
11   chr4  121647361      122830668  NM_001130698     TRPC3
12   chr4  121647361      122830668     NM_001154     ANXA5
13   chr4  121647361      122830668     NM_001237     CCNA2
15   chr4  121647361      122830668  NM_001317839   TMEM155
19   chr4  121647361      122830668     NM_005033    EXOSC9
20   chr4  121647361      122830668     NM_018190      BBS7
21   chr4  121647361      122830668     NM_018699     PRDM5
22   chr4  121647361      122830668     NM_024574      NDNF
25   chr4  121647361      122830668     NM_198179     QRFPR
26   chr4  121647361      122830668     NR_024365   PP12613
27   chr7  110562909      110667510  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr16   29488030       29633352     NR_049833    MIR3680-2
1   chr16   29488030       29633352     NR_135305       SMG1P2
3   chr20   14803262       14916010     NM_080676      MACROD2
4   chr20   14803262       14916010     NR_037841  MACROD2-AS1
6    chr7  110540820      110653703  NM_001244606       IMMP2L
8    chr8    7190418        7291687  NM_001081551     DEFB103A
9    chr8    7190418        7291687  NM_001164457      ZNF705G
10   chr8    7190418        7291687  NM_001205266       DEFB4B
11   chr8    7190418        7291687  NM_001256873      USP17L1
12   chr8    7190418        7291687  NM_001256874      USP17L4
13   chr8    7190418        7291687     NR_027423       FAM66B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244973878      246821768  NM_001139459          CNST
1    chr1  244973878      246821768  NM_001143943        EFCAB2
2    chr1  244973878      246821768  NM_001167740         SMYD3
4    chr1  244973878      246821768  NM_001312871         COX20
6    chr1  244973878      246821768     NM_004501        HNRNPU
7    chr1  244973878      246821768     NM_018012        KIF26B
8    chr1  244973878      246821768     NM_022366         TFB2M
13   chr1  244973878      246821768     NR_040002     LOC255654
14   chr1  244973878      246821768     NR_111907  LOC101928068
15   chr1  244973878      246821768     NR_132782      SNORA100
16  chr13   40321987       40434777  NM_001145079          COG6
18  chr14   21930614       22055000  NM_001005465        OR10G3
19  chr14   21930614       22055000  NM_001163380         RAB2B
20  chr14   21930614       22055000  NM_001303523          TOX4
21  chr14   21930614       22055000     NM_019852        METTL3
23  chr14   21930614       22055000     NR_111966         SALL2
25  chr14   47738690       47857138  NM_001113498         MDGA2
28   chr2   25039586       25184908  NM_001198559       DNAJC27
29   chr2   25039586       25184908  NM_001320613         ADCY3
30   chr2   25039586       25184908  NM_001322101         CENPO
31   chr4  190390075      190747369     NR_121679     LINC01262
32   chr4  190390075      190747369     NR_135513  LOC105379514,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4222196        4380267     NR_047550  LOC100506082
1   chr15   28597140       29090348  NM_001282468       GOLGA8M
2   chr15   28597140       29090348     NR_026589       WHAMMP2
3   chr15   28597140       29090348     NR_033351       GOLGA8F
5   chr15   28597140       29090348     NR_033353       GOLGA8G
7   chr15   28597140       29090348     NR_036443       HERC2P9
8   chr15   28597140       29090348     NR_036475  LOC100289656
9   chr15   28597140       29090348     NR_037599     PDCD6IPP2
10  chr15   28597140       29090348     NR_039734     MIR4509-3
12  chr15   28597140       29090348     NR_047567     GOLGA6L7P
13  chr21   22642996       22832881     NM_004540         NCAM2
14   chr4   94209155       94312704     NM_001510         GRID2
15   chr4  108657433      108797211  NM_001136258         SGMS2
16   chr4  108657433      108797211     NR_125929  LOC101929595
17   chr8    7838570        8449681  NM_001080826         PRAG1
18   chr8    7838570        8449681     NR_003668    DEFB109P1B
19   chr8    7838570        8449681     NR_024361      FAM86B3P
22   chr8    7838570        8449681     NR_027424        FAM66E
23   chr8    7838570        8449681     NR_031689      MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18376166       18542271  NM_001004060         NOMO2
1   chr16   18376166       18542271  NM_001282511        NPIPA8
2   chr16   18376166       18542271     NR_036140     MIR3179-1
3   chr16   18376166       18542271     NR_036142     MIR3180-2
4   chr16   18376166       18542271     NR_036144     MIR3180-3
5   chr16   18376166       18542271     NR_037442     MIR3670-1
6   chr16   18376166       18542271     NR_103772  LOC100288162
7   chr16   18376166       18542271     NR_106971     MIR6511A4
8   chr16   18376166       18542271     NR_107060     MIR6770-2
9    chr5   99790792      100002913     NM_198507       FAM174A
10   chr6  130107299      130235974  NM_001010876       TMEM244,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   41351377       41525442  NM_001145353       ELF1
1   chr13   41351377       41525442     NM_014252   SLC25A15
3   chr13   41351377       41525442     NR_003365    SUGT1P3
4   chr13   41351377       41525442     NR_030352     MIR621
5   chr13   41351377       41525442     NR_038259    TPTE2P5
6   chr14   21723499       22005902  NM_001163380      RAB2B
7   chr14   21723499       22005902  NM_001170629       CHD8
8   chr14   21723499       22005902  NM_001303523       TOX4
9   chr14   21723499       22005902     NM_007192    SUPT16H
10  chr14   21723499       22005902     NM_019852     METTL3
11  chr14   21723499       22005902     NM_020366    RPGRIP1
13  chr14   21723499       22005902     NM_031314     HNRNPC
15  chr14   21723499       22005902     NR_002916     SNORD8
16  chr14   21723499       22005902     NR_003029     SNORD9
17  chr14   21723499       22005902     NR_111966      SALL2
19  chr14   21730797       22200474  NM_001001912      OR4E2
20  chr14   21730797       22200474  NM_001005465     OR10G3
21  chr14   21730797       22200474  NM_001005466     OR10G2
22  chr14   21730797       22200474  NM_001163380      RAB2B
23  chr14   21730797       22200474  NM_001170629       CHD8
24  chr14   21730797       22200474  NM_001303523       TOX4
25  chr14   21730797       22200474  NM_001317107      OR4E1
26  chr14   21730797       22200474     NM_007192    SUPT16H
27  chr14   21730797       22200474     NM_019852     METTL3
28  chr14   21730797       22200474     NM_020366    RPGRIP1
30  chr14   21730797       22200474     NM_031314     HNRNPC
32  chr14   21730797       22200474     NR_002916     SNORD8
33  chr14   21730797       22200474     NR_003029     SNORD9
34  chr14   21730797       22200474     NR_111966      SALL2
36   chr4  181989848      182125876     NR_033918  LINC00290,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   60273414       60567399  NM_001278320      MS4A13
1   chr11   60273414       60567399  NM_001310141      MS4A18
2   chr11   60273414       60567399     NM_017716      MS4A12
3   chr11   60273414       60567399     NM_031457       MS4A8
4   chr11   60273414       60567399     NM_152717      MS4A15
5   chr11   60273414       60567399     NM_206893      MS4A10
6   chr11   60273414       60567399     NR_026946   LINC00301
7   chr13   46131129       46390169  NM_001286341       SPERT
9   chr13   46131129       46390169     NM_182542     ERICH6B
10  chr13   46131129       46390169     NM_198849       SIAH3
11  chr13   46131129       46390169     NR_125786   LINC01055
12  chr14   21814496       22380633  NM_001001912       OR4E2
13  chr14   21814496       22380633  NM_001005465      OR10G3
14  chr14   21814496       22380633  NM_001005466      OR10G2
15  chr14   21814496       22380633  NM_001163380       RAB2B
16  chr14   21814496       22380633  NM_001170629        CHD8
17  chr14   21814496       22380633  NM_001303523        TOX4
18  chr14   21814496       22380633  NM_001317107       OR4E1
19  chr14   21814496       22380633     NM_007192     SUPT16H
20  chr14   21814496       22380633     NM_019852      METTL3
21  chr14   21814496       22380633     NM_020366     RPGRIP1
24  chr14   21814496       22380633     NR_002916      SNORD8
25  chr14   21814496       22380633     NR_003029      SNORD9
26  chr14   21814496       22380633     NR_111966       SALL2
28   chr3  101144623      101643093     NM_000986       RPL24
29   chr3  101144623      101643093  NM_001005474      NFKBIZ
30   chr3  101144623      101643093  NM_001134456       NXPE3
31   chr3  101144623      101643093  NM_001282803       SENP7
33   chr3  101144623      101643093  NM_001303401       CEP97
34   chr3  101144623      101643093  NM_001320399        PCNP
35   chr3  101144623      101643093     NM_014415      ZBTB11
36   chr3  101144623      101643093     NM_017819     TRMT10C
39   chr3  101144623      101643093     NR_002941     PDCL3P4
40   chr3  101144623      101643093     NR_024407  ZBTB11-AS1
41   chr3  101144623      101643093     NR_036433    FAM172BP
42   chr4  169215879      169343590  NM_001012967      DDX60L
44   chr4  169215879      169343590     NM_017631       DDX60
45   chr7   88957111       89245378     NM_181646     ZNF804B
46   chr7  110570288      111088507  NM_001099658       LRRN3
47   chr7  110570288      111088507  NM_001244606      IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18515799       18631016  NM_001004060         NOMO2
1  chr16   18515799       18631016     NR_003569       ABCC6P1
2   chr2  195567343      195690272     NR_110223  LOC101927431
3   chr3  131248218      131367928  NM_001289112         CPNE4,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   59362031       59503333  NM_001005324        OR10V1
1  chr11   59362031       59503333     NM_002556          OSBP
2  chr11   59362031       59503333     NM_152716         PATL1
3  chr11   59362031       59503333     NR_036120       MIR3162
4  chr16   18287215       18446624  NM_001282511        NPIPA8
5  chr16   18287215       18446624     NR_103772  LOC100288162
6  chr16   18287215       18446624     NR_106971     MIR6511A4
7  chr18   63515045       63615319  NM_001317214          CDH7,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr11   48340882       49203539  NM_001004702       OR4C3
1   chr11   48340882       49203539  NM_001005512      OR4A47
2   chr11   48340882       49203539  NM_001005513      OR4C45
3   chr11   48340882       49203539  NM_001193472       FOLH1
4   chr11   48340882       49203539  NM_001206626     TRIM49B
5   chr11   48340882       49203539  NM_001206631     TRIM64C
6   chr14   21872734       22050315  NM_001005465      OR10G3
7   chr14   21872734       22050315  NM_001163380       RAB2B
8   chr14   21872734       22050315  NM_001170629        CHD8
9   chr14   21872734       22050315  NM_001303523        TOX4
10  chr14   21872734       22050315     NM_019852      METTL3
13  chr14   21872734       22050315     NR_111966       SALL2
15   chr8    7018077        7620981  NM_001040705    DEFB107B
16   chr8    7018077        7620981  NM_001081551    DEFB103A
17   chr8    7018077        7620981  NM_001164457     ZNF705G
18   chr8    7018077        7620981  NM_001205266      DEFB4B
19   chr8    7018077        7620981  NM_001256873     USP17L1
20   chr8    7018077        7620981  NM_001256874     USP17L4
21   chr8    7018077        7620981  NM_001282478     PRR23D2
22   chr8    7018077        7620981  NM_001282479     PRR23D1
23   chr8    7018077        7620981     NM_058200     SPAG11B
27   chr8    7018077        7620981     NM_080389    DEFB104A
28   chr8    7018077        7620981     NM_152250    DEFB105A
29   chr8    7018077        7620981     NM_152251    DEFB106A
30   chr8    7018077        7620981     NR_003668  DEFB109P1B
31   chr8    7018077        7620981     NR_027000   LINC00965
34   chr8    7018077        7620981     NR_027423      FAM66B
35   chr8    7018077        7620981     NR_046343    FAM90A7P,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143671124      143898702  NM_001123068       PPIAL4G
1   chr1  143671124      143898702  NM_001287385        FAM72C
2   chr1  143671124      143898702  NM_001345942        FAM72D
5   chr1  143671124      143898702     NR_104014     LINC01138
6   chr1  143671124      143898702     NR_106967       MIR6077
7   chr1  143671124      143898702     NR_111930  LOC100132057
9  chr16    6707789        6881367  NM_001142334        RBFOX1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21707717       21962784  NM_001163380     RAB2B
1   chr14   21707717       21962784  NM_001170629      CHD8
2   chr14   21707717       21962784  NM_001303523      TOX4
3   chr14   21707717       21962784     NM_007192   SUPT16H
4   chr14   21707717       21962784     NM_020366   RPGRIP1
6   chr14   21707717       21962784     NM_031314    HNRNPC
8   chr14   21707717       21962784     NR_002916    SNORD8
9   chr14   21707717       21962784     NR_003029    SNORD9
10  chr15   29818786       29949754     NM_015307  FAM189A1
11  chr20   25317701       25444155  NM_001042472    ABHD12
12  chr20   25317701       25444155  NM_001318226      NINL
14  chr20   25317701       25444155     NM_021067     GINS1
15   chr4    9122274       10607459     NM_000798      DRD5
16   chr4    9122274       10607459  NM_001001290    SLC2A9
17   chr4    9122274       10607459  NM_001040448   DEFB131
18   chr4    9122274       10607459  NM_001242326  USP17L25
26   chr4    9122274       10607459  NM_001256852  USP17L10
27   chr4    9122274       10607459  NM_001256853  USP17L12
29   chr4    9122274       10607459  NM_001256854  USP17L11
32   chr4    9122274       10607459  NM_001256855  USP17L13
33   chr4    9122274       10607459  NM_001256857  USP17L17
34   chr4    9122274       10607459  NM_001256860  USP17L19
35   chr4    9122274       10607459  NM_001256861  USP17L20
36   chr4    9122274       10607459  NM_001256894  USP17L15
37   chr4    9122274       10607459     NM_005112      WDR1
39   chr4    9122274       10607459     NM_052964      CLNK
40   chr4    9122274       10607459     NM_053042   ZNF518B
41   chr4    9122274       10607459     NR_027279  USP17L6P
42   chr4    9122274       10607459     NR_031688  MIR548I2
43   chr4    9122274       10607459     NR_036090   MIR3138
44   chr4    9122274       10607459     NR_046416  USP17L9P,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   83687166       83789814  NM_001142699      DLG2
4   chr14   21794185       21967465  NM_001163380     RAB2B
5   chr14   21794185       21967465  NM_001170629      CHD8
6   chr14   21794185       21967465  NM_001303523      TOX4
7   chr14   21794185       21967465     NM_007192   SUPT16H
8   chr14   21794185       21967465     NM_019852    METTL3
9   chr14   21794185       21967465     NM_020366   RPGRIP1
12  chr14   21794185       21967465     NR_002916    SNORD8
13  chr14   21794185       21967465     NR_003029    SNORD9
14   chr6  162697873      163011882     NM_013988     PARK2
15   chr7  110691886      110849957  NM_001099658     LRRN3
16   chr7  110691886      110849957  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2   97154990       97308701  NM_001115016        KANSL3
1    chr2   97154990       97308701  NM_001285485        NEURL3
2    chr2   97154990       97308701  NM_001293083        FER1L5
3    chr2   97154990       97308701  NM_001319085        ARID5A
7    chr2   97154990       97308701     NR_135564  LOC105373496
8   chr22   17257978       17671094  NM_001037814          GAB4
9   chr22   17257978       17671094  NM_001163079         CECR6
10  chr22   17257978       17671094  NM_001282227         CECR1
12  chr22   17257978       17671094  NM_001289905        IL17RA
13  chr22   17257978       17671094     NM_017829         CECR5
16  chr22   17257978       17671094     NM_175878          XKR3
18  chr22   17257978       17671094     NR_003607       HSFY1P1
19  chr22   17257978       17671094     NR_015352         CECR7
20  chr22   17257978       17671094     NR_024482     CECR5-AS1
21  chr22   17257978       17671094     NR_103793  LOC100996342,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143705022      143811455  NM_001123068       PPIAL4G
1    chr1  143705022      143811455     NR_104014     LINC01138
2    chr1  143705022      143811455     NR_111930  LOC100132057
3   chr14   21799713       22031342  NM_001163380         RAB2B
4   chr14   21799713       22031342  NM_001170629          CHD8
5   chr14   21799713       22031342  NM_001303523          TOX4
6   chr14   21799713       22031342     NM_007192       SUPT16H
7   chr14   21799713       22031342     NM_019852        METTL3
8   chr14   21799713       22031342     NM_020366       RPGRIP1
11  chr14   21799713       22031342     NR_002916        SNORD8
12  chr14   21799713       22031342     NR_003029        SNORD9
13  chr14   21799713       22031342     NR_111966         SALL2
15  chr17   63406869       63587962     NM_004655         AXIN2
16  chr17   63406869       63587962     NR_131984        CRAT40
17   chr7  108491177      108603883  NM_001024607       C7orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   40670104       41071467  NM_001258419        LRRC4C
1   chr16   21498423       21780826  NM_001077180        METTL9
2   chr16   21498423       21780826  NM_001161683          OTOA
4   chr16   21498423       21780826     NM_005849         IGSF6
7   chr16   21498423       21780826     NR_002594      SLC7A5P2
8   chr16   21498423       21780826     NR_027155        SMG1P3
9   chr16   21498423       21780826     NR_049833     MIR3680-2
10  chr16   21498423       21780826     NR_110930  LOC101927814
11  chr17    5597126        5857346     NR_040000     LOC339166
12  chr20   14687720       15365461  NM_001033087       MACROD2
14  chr20   14687720       15365461     NR_037841   MACROD2-AS1
16  chr21   13713675       14674258     NR_026916    ANKRD30BP2
17   chr6  162760057      163216266  NM_001080378         PACRG
19   chr6  162760057      163216266     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143649459      143940529  NM_001123068       PPIAL4G
1    chr1  143649459      143940529  NM_001287385        FAM72C
2    chr1  143649459      143940529  NM_001345942        FAM72D
6    chr1  143649459      143940529     NR_104014     LINC01138
7    chr1  143649459      143940529     NR_106967       MIR6077
8    chr1  143649459      143940529     NR_111930  LOC100132057
10  chr15   30234168       30362957  NM_001301025          TJP1
11   chr2   96002870       96117488  NM_001034914        KCNIP3
13   chr2   96002870       96117488     NM_016044        FAHD2A
14   chr4   58629553       59733044     NR_133943  LOC105377671
15   chr4   69032259       70340218  NM_001031732        YTHDC1
16   chr4   69032259       70340218     NM_001073       UGT2B11
17   chr4   69032259       70340218     NM_001075       UGT2B10
19   chr4   69032259       70340218     NM_001076       UGT2B15
20   chr4   69032259       70340218     NM_001077       UGT2B17
21   chr4   69032259       70340218  NM_001207004       UGT2B28
22   chr4   69032259       70340218  NM_001330719        UGT2B7
23   chr4   69032259       70340218     NM_014058     TMPRSS11E
24   chr4   69032259       70340218     NM_024743        UGT2A3
25   chr4   69032259       70340218     NM_182502     TMPRSS11B
26   chr4   69032259       70340218     NR_015446        FTLP10
27   chr4   69032259       70340218     NR_104048   TMPRSS11BNL
28   chr4   69032259       70340218     NR_136191  LOC105377267
29   chr6    5114714        5236826  NM_001164840         LYRM4
32   chr6    5114714        5236826     NR_037462       MIR3691
33   chr6    5114714        5236826     NR_126015     LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   85692296       85803152     NM_006982      ALX1
1   chr14   21892172       22038537  NM_001005465    OR10G3
2   chr14   21892172       22038537  NM_001163380     RAB2B
3   chr14   21892172       22038537  NM_001170629      CHD8
4   chr14   21892172       22038537  NM_001303523      TOX4
5   chr14   21892172       22038537     NM_019852    METTL3
8   chr14   21892172       22038537     NR_111966     SALL2
10  chr14   47911081       48052716  NM_001113498     MDGA2
11   chr3    1137811        1246802  NM_001289081     CNTN6
12   chr7   11026514       11457469     NM_014660     PHF14
13   chr7   11026514       11457469     NM_015204    THSD7A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143701364      143920980  NM_001123068       PPIAL4G
1    chr1  143701364      143920980  NM_001287385        FAM72C
2    chr1  143701364      143920980  NM_001345942        FAM72D
6    chr1  143701364      143920980     NR_104014     LINC01138
7    chr1  143701364      143920980     NR_111930  LOC100132057
9   chr12   80932828       81078258  NM_001145026         PTPRQ
10  chr12   97926690       98337115     NR_024037          RMST
11  chr12   97926690       98337115     NR_029678      MIR135A2
12  chr12   97926690       98337115     NR_039716       MIR4495
13  chr12   97926690       98337115     NR_077240     LOC643711,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27194643       27306763  NM_001080406      C12orf71
1   chr16   18434906       18699661  NM_001004060         NOMO2
2   chr16   18434906       18699661     NR_003569       ABCC6P1
3   chr16   18434906       18699661     NR_036140     MIR3179-1
4   chr16   18434906       18699661     NR_036142     MIR3180-2
5   chr16   18434906       18699661     NR_036144     MIR3180-3
6   chr16   18434906       18699661     NR_037442     MIR3670-1
7   chr16   18434906       18699661     NR_103772  LOC100288162
8   chr16   18434906       18699661     NR_106971     MIR6511A4
9   chr16   18434906       18699661     NR_107060     MIR6770-2
10  chr16   68542931       68672560  NM_001305204         ZFP90
12  chr19   47800218       48068334  NM_001009813         MEIS3
13  chr19   47800218       48068334  NM_001271749         C5AR2
15  chr19   47800218       48068334  NM_001277075        ZNF541
16  chr19   47800218       48068334  NM_001291296          KPTN
19  chr19   47800218       48068334     NM_001736         C5AR1
20  chr19   47800218       48068334     NM_014681         DHX34
21  chr19   47800218       48068334     NM_015063        SLC8A2
23  chr19   47800218       48068334     NR_038452      NAPA-AS1
24  chr19   47800218       48068334     NR_038457          NAPA
25   chr2  133641024      134346738     NM_207363        NCKAP5
26   chr2  133641024      134346738     NR_110294  LOC101928161
27   chr2  133641024      134346738     NR_135572  LOC101928185
28   chr7  145372719      145913764     NM_014141       CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21776568       21878811  NM_001170629          CHD8
1   chr14   21776568       21878811     NM_007192       SUPT16H
2   chr14   21776568       21878811     NM_020366       RPGRIP1
4   chr14   21776568       21878811     NR_002916        SNORD8
5   chr14   21776568       21878811     NR_003029        SNORD9
6   chr15   28243604       28534674     NM_000275          OCA2
8   chr15   28243604       28534674     NM_004667         HERC2
9    chr2  186291565      187610077  NM_001144999         ITGAV
11   chr2  186291565      187610077     NM_018471        ZC3H15
12   chr2  186291565      187610077     NM_173651         FSIP2
13   chr2  186291565      187610077     NM_177454       FAM171B
14   chr2  186291565      187610077     NR_110214  LOC101927196
17   chr2  186291565      187610077     NR_110218     LINC01473
18   chr2  186291565      187610077     NR_144453     FSIP2-AS1
20   chr6  162686977      162790641     NM_013988         PARK2
21   chr9   15011030       15155689     NR_003920     LOC389705,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48399299       48580269  NM_001005512    OR4A47
1  chr18   35132651       35253101     NM_020180     CELF4
2  chr18   35132651       35253101     NR_036202   MIR4318
3   chr7   64119874       64335762  NM_001160183    ZNF138
4   chr7   64119874       64335762  NM_001282360    ZNF107
7   chr7   64119874       64335762     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67580521       68250051  NM_001127384        CTNNA3
2   chr11   86656516       86789344  NM_001168724       TMEM135
3   chr11   86656516       86789344     NM_012193          FZD4
4   chr11   86656516       86789344     NR_038905  LOC100506368
5   chr11   86656516       86789344     NR_120592        PRSS23
6   chr16   16416534       16957579  NM_001282511        NPIPA8
7   chr16   16416534       16957579     NR_036447        PKD1P1
8   chr16   16416534       16957579     NR_103772  LOC100288162
9   chr16   16416534       16957579     NR_106766     MIR6511A1
10  chr16   16416534       16957579     NR_106971     MIR6511A4
11  chr16   16416534       16957579     NR_107060     MIR6770-2
12   chr4   93778774       94013912     NM_001510         GRID2
13   chr6  162756609      162916979     NM_013988         PARK2
14   chr9   41856785       41976014     NR_003670        FGF7P3
15   chr9   41856785       41976014     NR_015363         GLIDR,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0     chr1   76005396       76191840     NM_000016         ACADM
1     chr1   76005396       76191840  NM_001130058       SLC44A5
5    chr13   63322656       63463121     NR_047029     LINC00448
8    chr14   19862672       19989683  NM_001145442         POTEM
9    chr14   19862672       19989683     NR_073459       BMS1P18
10   chr14   19862672       19989683     NR_110526       DUXAP10
11   chr14   19862672       19989683     NR_122111     LINC01296
13   chr14   19862672       19989683     NR_133911       BMS1P22
14   chr16   68625827       68903221  NM_001317184          CDH1
15   chr16   68625827       68903221  NM_001317195          CDH3
16   chr16   68625827       68903221     NM_024562        TANGO6
17   chr16   68625827       68903221     NR_106988     MIR7641-2
18   chr19    1867361        2128959  NM_001031735        IZUMO4
19   chr19    1867361        2128959  NM_001130111       ABHD17A
20   chr19    1867361        2128959     NM_001319       CSNK1G2
21   chr19    1867361        2128959  NM_001329539        SCAMP4
22   chr19    1867361        2128959     NM_003938         AP3D1
23   chr19    1867361        2128959     NM_017572         MKNK2
24   chr19    1867361        2128959     NM_017797         BTBD2
25   chr19    1867361        2128959     NM_130807         MOB3A
26   chr19    1867361        2128959     NM_138422         ADAT3
27   chr19    1867361        2128959     NR_033400   CSNK1G2-AS1
28   chr22   17175760       19725680     NM_000407         GP1BB
29   chr22   17175760       19725680  NM_001009939         SEPT5
30   chr22   17175760       19725680  NM_001035247         UFD1L
31   chr22   17175760       19725680  NM_001037814          GAB4
32   chr22   17175760       19725680  NM_001122731        MICAL3
33   chr22   17175760       19725680  NM_001127649         PEX26
35   chr22   17175760       19725680  NM_001163079         CECR6
36   chr22   17175760       19725680  NM_001166242      C22orf39
..     ...        ...            ...           ...           ...
62   chr22   17175760       19725680     NM_005315          GSC2
63   chr22   17175760       19725680     NM_005675         DGCR6
68   chr22   17175760       19725680     NM_017414         USP18
69   chr22   17175760       19725680     NM_017829         CECR5
70   chr22   17175760       19725680     NM_022719        DGCR14
73   chr22   17175760       19725680     NM_053006         TSSK2
75   chr22   17175760       19725680     NM_175878          XKR3
77   chr22   17175760       19725680     NR_002733         DGCR5
78   chr22   17175760       19725680     NR_003267         GGT3P
79   chr22   17175760       19725680     NR_003607       HSFY1P1
80   chr22   17175760       19725680     NR_015352         CECR7
81   chr22   17175760       19725680     NR_024157        DGCR11
82   chr22   17175760       19725680     NR_024159         DGCR9
83   chr22   17175760       19725680     NR_024381     LINC00895
84   chr22   17175760       19725680     NR_024417      FLJ41941
85   chr22   17175760       19725680     NR_024482     CECR5-AS1
86   chr22   17175760       19725680     NR_026651        DGCR10
87   chr22   17175760       19725680     NR_030378        MIR648
88   chr22   17175760       19725680     NR_036168     MIR3198-1
89   chr22   17175760       19725680     NR_037611   SEPT5-GP1BB
91   chr22   17175760       19725680     NR_038398         CECR3
93   chr22   17175760       19725680     NR_103718     LINC00528
94   chr22   17175760       19725680     NR_103767     LINC01311
95   chr22   17175760       19725680     NR_103793  LOC100996342
97   chr22   17175760       19725680     NR_134584  LOC101929350
98   chr22   17175760       19725680     NR_135922  LOC102725072
99   chr22   17175760       19725680     NR_136561     LOC642643
100  chr22   17175760       19725680     NR_136570  LOC100996415
101  chr22   17175760       19725680     NR_136571  LOC100996432
102  chr22   17175760       19725680     NR_136574  LOC105379550

[77 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245047554      245218767  NM_001143943        EFCAB2
3    chr1  245047554      245218767     NR_111907  LOC101928068
4   chr12   72608638       72863705     NM_013381         TRHDE
5   chr12   72608638       72863705     NR_026836     TRHDE-AS1
7   chr15   28718716       29521948  NM_001130414         APBA2
8   chr15   28718716       29521948  NM_001282468       GOLGA8M
9   chr15   28718716       29521948     NM_015307      FAM189A1
10  chr15   28718716       29521948     NR_026589       WHAMMP2
11  chr15   28718716       29521948     NR_033351       GOLGA8F
12  chr15   28718716       29521948     NR_033353       GOLGA8G
13  chr15   28718716       29521948     NR_036443       HERC2P9
14  chr15   28718716       29521948     NR_036475  LOC100289656
15  chr15   28718716       29521948     NR_037599     PDCD6IPP2
16  chr15   28718716       29521948     NR_039734     MIR4509-3
17  chr15   28718716       29521948     NR_047567     GOLGA6L7P
18  chr16   28739618       28852949  NM_001199142         EIF3C
20  chr16   28739618       28852949  NM_001287251        NPIPB9
21  chr16   28739618       28852949  NM_001317856        EIF3CL
22  chr16   28739618       28852949     NM_148416        ATXN2L
23  chr16   68597826       68758435  NM_001305204         ZFP90
25  chr16   68597826       68758435  NM_001317195          CDH3
26  chr17   56110494       57268935     NM_000250           MPO
27  chr17   56110494       57268935     NM_000502           EPX
28  chr17   56110494       57268935  NM_001004707         OR4D2
29  chr17   56110494       57268935  NM_001038704      C17orf47
30  chr17   56110494       57268935  NM_001080439          HSF5
31  chr17   56110494       57268935  NM_001165927          MKS1
32  chr17   56110494       57268935  NM_001201457         TEX14
33  chr17   56110494       57268935  NM_001256782         SEPT4
35  chr17   56110494       57268935  NM_001305544         RNF43
..    ...        ...            ...           ...           ...
43  chr17   56110494       57268935     NM_004758       TSPOAP1
44  chr17   56110494       57268935     NM_012374         OR4D1
45  chr17   56110494       57268935     NM_014906         PPM1E
47  chr17   56110494       57268935     NM_018304         PRR11
49  chr17   56110494       57268935     NM_080677        DYNLL2
51  chr17   56110494       57268935     NR_002307        MSX2P1
52  chr17   56110494       57268935     NR_027647           LPO
53  chr17   56110494       57268935     NR_029683        MIR142
54  chr17   56110494       57268935     NR_029842       MIR301A
55  chr17   56110494       57268935     NR_030411        MIR454
56  chr17   56110494       57268935     NR_038410   TSPOAP1-AS1
60  chr17   56110494       57268935     NR_039889       MIR4736
63  chr17   56110494       57268935     NR_110809  LOC101927666
64  chr17   56110494       57268935     NR_110810     SEPT4-AS1
65   chr7   71426399       71556424  NM_001017440         CALN1
67   chr7  143730092      143968789  NM_001001659        OR2A14
68   chr7  143730092      143968789  NM_001003702      ARHGEF35
69   chr7  143730092      143968789  NM_001004135        OR2A12
70   chr7  143730092      143968789  NM_001004488        OR2A25
71   chr7  143730092      143968789  NM_001005287         OR2A1
72   chr7  143730092      143968789  NM_001005328         OR2A7
73   chr7  143730092      143968789  NM_001005480         OR2A2
74   chr7  143730092      143968789  NM_001278507        CTAGE8
75   chr7  143730092      143968789     NM_012365         OR2A5
76   chr7  143730092      143968789     NM_198495        CTAGE4
78   chr7  143730092      143968789     NR_002157        OR2A9P
79   chr7  143730092      143968789     NR_002158       OR2A20P
80   chr7  143730092      143968789     NR_033942     ARHGEF34P
81   chr7  143730092      143968789     NR_126022  LOC101928605
82   chr7  143730092      143968789     NR_126023     OR2A1-AS1

[65 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88982233       89175940  NM_001099338      NUTM2A
1   chr10   88982233       89175940     NR_024397  NUTM2A-AS1
2   chr10   88982233       89175940     NR_029408   LINC00863
3   chr10   88982233       89175940     NR_046091   LINC00864
4   chr10   88982233       89175940     NR_075100      NUTM2D
6   chr14   21754701       22018971  NM_001163380       RAB2B
7   chr14   21754701       22018971  NM_001170629        CHD8
8   chr14   21754701       22018971  NM_001303523        TOX4
9   chr14   21754701       22018971     NM_007192     SUPT16H
10  chr14   21754701       22018971     NM_019852      METTL3
11  chr14   21754701       22018971     NM_020366     RPGRIP1
14  chr14   21754701       22018971     NR_002916      SNORD8
15  chr14   21754701       22018971     NR_003029      SNORD9
16  chr14   21754701       22018971     NR_111966       SALL2
18  chr15   28622900       28787788     NR_033351     GOLGA8F
20  chr15   28622900       28787788     NR_033353     GOLGA8G
22  chr15   28622900       28787788     NR_039734   MIR4509-3
24   chr7   64113502       64488732  NM_001007253      ERV3-1
25   chr7   64113502       64488732  NM_001160183      ZNF138
26   chr7   64113502       64488732  NM_001282360      ZNF107
27   chr7   64113502       64488732     NM_015852      ZNF117
28   chr7   64113502       64488732     NM_021148      ZNF273
31   chr7   64113502       64488732     NR_106898     MIR6839
32   chr8    7911192        8053551     NR_031689    MIR548I3
33   chr9  101838779      102116076     NM_004612      TGFBR1
34   chr9  101838779      102116076     NM_006808      SEC61B
35   chr9  101838779      102116076     NM_033087        ALG2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr13   80840669       81131574  NM_001318536     SPRY2
3   chr14   21754766       21911907  NM_001170629      CHD8
4   chr14   21754766       21911907     NM_007192   SUPT16H
5   chr14   21754766       21911907     NM_020366   RPGRIP1
7   chr14   21754766       21911907     NR_002916    SNORD8
8   chr14   21754766       21911907     NR_003029    SNORD9
9    chr3  131311691      131567864  NM_001289112     CPNE4
12   chr7  110534125      110700230  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21844743       21957044  NM_001163380      RAB2B
1   chr14   21844743       21957044  NM_001170629       CHD8
2   chr14   21844743       21957044  NM_001303523       TOX4
3   chr14   21844743       21957044     NM_007192    SUPT16H
6   chr14   21844743       21957044     NR_002916     SNORD8
7   chr14   21844743       21957044     NR_003029     SNORD9
8    chr3   41320655       41428517  NM_001322500       ULK4
10   chr3   60412291       60646682  NM_001320899       FHIT
11   chr3   60412291       60646682     NR_128708   MIR548BB
12   chr9   80111511       80224701     NM_004297      GNA14
13   chr9   80111511       80224701     NR_121184  GNA14-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18125583       18465473  NM_001282511        NPIPA8
1  chr16   18125583       18465473     NR_103772  LOC100288162
2  chr16   18125583       18465473     NR_106971     MIR6511A4
3   chr2  129435804      129751744     NR_110278  LOC101927881
4   chr2  214305332      214533755     NM_024532        SPAG16
5   chr9   41849305       41952741     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21759485       22148240  NM_001001912     OR4E2
1   chr14   21759485       22148240  NM_001005465    OR10G3
2   chr14   21759485       22148240  NM_001005466    OR10G2
3   chr14   21759485       22148240  NM_001163380     RAB2B
4   chr14   21759485       22148240  NM_001170629      CHD8
5   chr14   21759485       22148240  NM_001303523      TOX4
6   chr14   21759485       22148240  NM_001317107     OR4E1
7   chr14   21759485       22148240     NM_007192   SUPT16H
8   chr14   21759485       22148240     NM_019852    METTL3
9   chr14   21759485       22148240     NM_020366   RPGRIP1
12  chr14   21759485       22148240     NR_002916    SNORD8
13  chr14   21759485       22148240     NR_003029    SNORD9
14  chr14   21759485       22148240     NR_111966     SALL2
16  chr14   42180910       42520394  NM_001346175     LRFN5
17   chr2   97201509       97396807  NM_001115016    KANSL3
18   chr2   97201509       97396807  NM_001293083    FER1L5
19   chr2   97201509       97396807  NM_001319085    ARID5A
21   chr2   97201509       97396807  NM_001322354    LMAN2L
24   chr2  242471327      242708776  NM_001164356     THAP4
25   chr2  242471327      242708776  NM_001165031     DTYMK
26   chr2  242471327      242708776  NM_001287249    D2HGDH
27   chr2  242471327      242708776  NM_001330161      ING5
31   chr2  242471327      242708776     NM_032515       BOK
32   chr2  242471327      242708776     NM_178326     ATG4B
33   chr2  242471327      242708776     NR_033346   BOK-AS1
34  chr22   17254519       17396523     NM_175878      XKR3
35  chr22   17254519       17396523     NR_003607   HSFY1P1
36   chr7   64099715       64898609  NM_001007253    ERV3-1
37   chr7   64099715       64898609  NM_001160183    ZNF138
38   chr7   64099715       64898609  NM_001282360    ZNF107
39   chr7   64099715       64898609  NM_001287532     ZNF92
40   chr7   64099715       64898609     NM_015852    ZNF117
41   chr7   64099715       64898609     NM_021148    ZNF273
42   chr7   64099715       64898609     NR_033416    CCT6P3
45   chr7   64099715       64898609     NR_106898   MIR6839
46   chr8    2031396        2146804     NM_003970     MYOM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143403027      143822146  NM_001123068       PPIAL4G
1    chr1  143403027      143822146     NR_104014     LINC01138
2    chr1  143403027      143822146     NR_106967       MIR6077
3    chr1  143403027      143822146     NR_111930  LOC100132057
4   chr16   71038700       71140466  NM_001198542         HYDIN
7    chr2  133772912      134308904     NM_207363        NCKAP5
8    chr2  133772912      134308904     NR_110294  LOC101928161
9   chr20   14699483       14802750     NM_080676       MACROD2
10   chr6  162762029      162862793     NM_013988         PARK2
11   chr7    6757678        6873772  NM_001099697      RSPH10B2
12   chr7    6757678        6873772     NM_198097         CCZ1B
13   chr7    6757678        6873772     NR_002217        PMS2CL,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21910197       22061173  NM_001005465     OR10G3
1   chr14   21910197       22061173  NM_001163380      RAB2B
2   chr14   21910197       22061173  NM_001303523       TOX4
3   chr14   21910197       22061173     NM_019852     METTL3
5   chr14   21910197       22061173     NR_111966      SALL2
7    chr2   51188582       51333217  NM_001330079      NRXN1
10   chr2   51188582       51333217     NR_135237  LOC730100
11   chr6  130128440      130301361  NM_001010876    TMEM244
12   chr9   16776440       16917456     NM_017637       BNC2,     chrom  cnv_start  cnv_terminate       tx_name        gene_name
0    chr1  143679770      144019416  NM_001123068          PPIAL4G
1    chr1  143679770      144019416  NM_001287385           FAM72C
2    chr1  143679770      144019416  NM_001345942           FAM72D
6    chr1  143679770      144019416     NR_104014        LINC01138
7    chr1  143679770      144019416     NR_111930     LOC100132057
9   chr14   27005082       27303692     NM_002515            NOVA1
11  chr14   27005082       27303692     NR_110033     LOC101927062
12  chr14   27005082       27303692     NR_110556     LOC102724890
13  chr15   36203298       36321072     NR_039735          MIR4510
14   chr2  110155743      110696788  NM_001037866            RGPD6
15   chr2  110155743      110696788  NM_001099289           SH3RF3
17   chr2  110155743      110696788  NM_001205288            LIMS4
18   chr2  110155743      110696788  NM_001321504           SEPT10
20   chr2  110155743      110696788     NM_005054            RGPD5
21   chr2  110155743      110696788     NM_023016           SOWAHC
22   chr2  110155743      110696788     NR_027145  LIMS3-LOC440895
23   chr2  110155743      110696788     NR_027467            LIMS3
24   chr9    8034869        8382639     NM_002839            PTPRD,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   21818083       21928468  NM_001163380          RAB2B
1   chr14   21818083       21928468  NM_001170629           CHD8
2   chr14   21818083       21928468     NM_007192        SUPT16H
3   chr14   21818083       21928468     NM_020366        RPGRIP1
6   chr14   21818083       21928468     NR_002916         SNORD8
7   chr14   21818083       21928468     NR_003029         SNORD9
8   chr16   18438767       18705758  NM_001004060          NOMO2
9   chr16   18438767       18705758     NR_003569        ABCC6P1
10  chr16   18438767       18705758     NR_036140      MIR3179-1
11  chr16   18438767       18705758     NR_036142      MIR3180-2
12  chr16   18438767       18705758     NR_036144      MIR3180-3
13  chr16   18438767       18705758     NR_037442      MIR3670-1
14  chr16   18438767       18705758     NR_107060      MIR6770-2
15  chr16   29459363       29560821  NM_001014999          SLX1A
16  chr16   29459363       29560821  NM_001017390        SULT1A4
17  chr16   29459363       29560821  NM_001031827          BOLA2
18  chr16   29459363       29560821  NM_001320622   BOLA2-SMG1P6
20  chr16   29459363       29560821     NR_002454      LOC606724
21  chr16   29459363       29560821     NR_002556      LOC388242
22  chr16   29459363       29560821     NR_037608  SLX1A-SULT1A3
24  chr16   29459363       29560821     NR_135305         SMG1P2
26  chr20   14885711       15022796     NM_080676        MACROD2
27  chr20   14885711       15022796     NR_037841    MACROD2-AS1
29   chr3    4024772        4568474  NM_001164675          SUMF1
30   chr3    4024772        4568474  NM_001168272          ITPR1
31   chr3    4024772        4568474  NM_001243723         SETMAR
33   chr3    4024772        4568474     NR_108075      ITPR1-AS1
34   chr4   69127709       69276699  NM_001031732         YTHDC1
35   chr6   80907328       81163769     NM_000056         BCKDHB
36   chr6  162812077      163083073     NM_013988          PARK2
37   chr7    5562282        5666354     NM_001101           ACTB
38   chr7    5562282        5666354     NM_003088          FSCN1
39   chr7    5562282        5666354     NM_207116         RNF216
40   chr7    5562282        5666354     NR_126168      LOC221946
41   chr7    8728176        8926830     NM_152745          NXPH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    6694697        6882695  NM_001004489        OR2AG1
1   chr11    6694697        6882695  NM_001004490        OR2AG2
2   chr11    6694697        6882695     NM_003696         OR6A2
3   chr11    6694697        6882695     NM_022061        MRPL17
4   chr11    6694697        6882695     NM_178168        OR10A5
5   chr11    6694697        6882695     NR_003945        GVINP1
6   chr14   21695349       21807761     NM_020366       RPGRIP1
7   chr14   21695349       21807761     NM_031314        HNRNPC
8   chr16   18430960       18597097  NM_001004060         NOMO2
9   chr16   18430960       18597097     NR_003569       ABCC6P1
10  chr16   18430960       18597097     NR_036140     MIR3179-1
11  chr16   18430960       18597097     NR_036142     MIR3180-2
12  chr16   18430960       18597097     NR_036144     MIR3180-3
13  chr16   18430960       18597097     NR_037442     MIR3670-1
14  chr16   18430960       18597097     NR_103772  LOC100288162
15  chr16   18430960       18597097     NR_106971     MIR6511A4
16  chr16   18430960       18597097     NR_107060     MIR6770-2
17   chr4   91173057       91350888  NM_001145065        CCSER1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12815950       13160404  NM_001009611      PRAMEF4
1    chr1   12815950       13160404  NM_001010889      PRAMEF6
2    chr1   12815950       13160404  NM_001010890      PRAMEF9
3    chr1   12815950       13160404  NM_001012276      PRAMEF8
4    chr1   12815950       13160404  NM_001013407      PRAMEF5
5    chr1   12815950       13160404  NM_001013631     HNRNPCL1
6    chr1   12815950       13160404  NM_001080830     PRAMEF12
7    chr1   12815950       13160404  NM_001099850     PRAMEF18
8    chr1   12815950       13160404  NM_001100631     PRAMEF22
9    chr1   12815950       13160404  NM_001146181     HNRNPCL3
10   chr1   12815950       13160404  NM_001146344     PRAMEF11
11   chr1   12815950       13160404  NM_001294139      PRAMEF1
12   chr1   12815950       13160404  NM_001302551     HNRNPCL4
13   chr1   12815950       13160404  NM_001306072     PRAMEF26
14   chr1   12815950       13160404  NM_001310134     PRAMEF25
16   chr1   12815950       13160404     NM_023014      PRAMEF2
17   chr1   12815950       13160404     NM_152290     C1orf158
18  chr14   21898330       22540372  NM_001001912        OR4E2
19  chr14   21898330       22540372  NM_001005465       OR10G3
20  chr14   21898330       22540372  NM_001005466       OR10G2
21  chr14   21898330       22540372  NM_001163380        RAB2B
22  chr14   21898330       22540372  NM_001170629         CHD8
23  chr14   21898330       22540372  NM_001303523         TOX4
24  chr14   21898330       22540372  NM_001317107        OR4E1
25  chr14   21898330       22540372     NM_019852       METTL3
28  chr14   21898330       22540372     NR_111966        SALL2
30  chr20    5198961        5318963     NM_144773       PROKR2
31  chr20   14899818       15631213  NM_001033087      MACROD2
33  chr20   14899818       15631213     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145331686      145446053  NM_001277444         NBPF9
1    chr1  145331686      145446053  NM_001278267        NBPF20
2    chr1  145331686      145446053  NM_001302371        NBPF10
3    chr1  145331686      145446053  NM_001313972         TXNIP
5    chr1  145331686      145446053     NM_145277          HFE2
6    chr1  145331686      145446053     NR_104217       NBPF25P
7    chr1  145331686      145446053     NR_125967  LOC101928979
8   chr14   21843274       22803857  NM_001001912         OR4E2
9   chr14   21843274       22803857  NM_001005465        OR10G3
10  chr14   21843274       22803857  NM_001005466        OR10G2
11  chr14   21843274       22803857  NM_001163380         RAB2B
12  chr14   21843274       22803857  NM_001170629          CHD8
13  chr14   21843274       22803857  NM_001303523          TOX4
14  chr14   21843274       22803857  NM_001317107         OR4E1
15  chr14   21843274       22803857     NM_007192       SUPT16H
16  chr14   21843274       22803857     NM_019852        METTL3
19  chr14   21843274       22803857     NR_002916        SNORD8
20  chr14   21843274       22803857     NR_003029        SNORD9
21  chr14   21843274       22803857     NR_111966         SALL2
23  chr16   68588864       68721692  NM_001305204         ZFP90
25  chr16   68588864       68721692  NM_001317195          CDH3
26   chr2    1112031        1311847     NM_018968         SNTG2
27   chr6  144725109      144829782     NM_007124          UTRN
28   chr6  144725109      144829782     NR_132778       SNORA98
29   chr9   28608311       28904816  NM_001258282        LINGO2
31   chr9   28608311       28904816     NR_030597        MIR876
32   chr9   28608311       28904816     NR_030618        MIR873
33   chr9   43055032       43203767  NM_001012419     ANKRD20A3
34   chr9   43055032       43203767  NM_001012421     ANKRD20A2
35   chr9   43055032       43203767     NR_027472     LOC642929,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  143752134      143852898  NM_001123068    PPIAL4G
1  chr15   21147431       21391818     NR_040094  LINC01193
2  chr16   10527515       10738573  NM_001256160    ATF7IP2
3  chr16   10527515       10738573     NM_001424       EMP2
4  chr16   10527515       10738573     NM_144674      TEKT5
6   chr4  128480391      128593844     NM_015693       INTU,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr10   81523896       81655897     NR_029407      LOC642361
1   chr10   81523896       81655897     NR_120611     NUTM2B-AS1
4   chr16   14707273       15212857  NM_001134477           PARN
5   chr16   14707273       15212857  NM_001270767          NTAN1
6   chr16   14707273       15212857  NM_001277323         NPIPA3
8   chr16   14707273       15212857  NM_001277324         NPIPA2
10  chr16   14707273       15212857  NM_001285445         PDXDC1
15  chr16   14707273       15212857  NM_001301064           RRN3
17  chr16   14707273       15212857     NM_006985         NPIPA1
18  chr16   14707273       15212857     NM_014287          NOMO1
19  chr16   14707273       15212857     NM_016561           BFAR
20  chr16   14707273       15212857     NR_023387        ABCC6P2
21  chr16   14707273       15212857     NR_036140      MIR3179-1
22  chr16   14707273       15212857     NR_036141      MIR3180-1
23  chr16   14707273       15212857     NR_036142      MIR3180-2
24  chr16   14707273       15212857     NR_103772   LOC100288162
25  chr16   14707273       15212857     NR_106970      MIR6511A3
26  chr16   14707273       15212857     NR_107060      MIR6770-2
27  chr16   14707273       15212857     NR_123721  PKD1P6-NPIPP1
29  chr16   14707273       15212857     NR_125434   LOC100505915
30  chr16   14707273       15212857     NR_128713      MIR3670-4
31  chr16   14707273       15212857     NR_133651        PLA2G10
32   chr2  110183860      110299071  NM_001099289         SH3RF3
33  chr20   14825353       15018753     NM_080676        MACROD2
34  chr20   14825353       15018753     NR_037841    MACROD2-AS1
36   chr5  119893574      120410836  NM_001300783          PRR16
39   chr8    2080759        2190387     NM_003970          MYOM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   16329079       16459409  NM_001170798       SLC15A5
1   chr16   16439321       16540590  NM_001282511        NPIPA8
2   chr16   16439321       16540590     NR_036447        PKD1P1
3   chr16   16439321       16540590     NR_106971     MIR6511A4
4   chr16   21814536       21942374  NM_001310148        NPIPB4
5   chr16   21814536       21942374     NR_003370        RRN3P1
6    chr4   94197338       95182917  NM_001128429      SMARCAD1
9    chr4   94197338       95182917     NM_001510         GRID2
10   chr4   94197338       95182917     NM_005172         ATOH1
12   chr4   94197338       95182917     NR_125922  LOC101929210,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0     chr1   12793130       13435172  NM_001009611       PRAMEF4
1     chr1   12793130       13435172  NM_001010889       PRAMEF6
3     chr1   12793130       13435172  NM_001010890       PRAMEF9
4     chr1   12793130       13435172  NM_001012276       PRAMEF8
6     chr1   12793130       13435172  NM_001013407       PRAMEF5
8     chr1   12793130       13435172  NM_001013631      HNRNPCL1
9     chr1   12793130       13435172  NM_001039361      PRAMEF10
10    chr1   12793130       13435172  NM_001080830      PRAMEF12
11    chr1   12793130       13435172  NM_001098376      PRAMEF15
12    chr1   12793130       13435172  NM_001099850      PRAMEF18
14    chr1   12793130       13435172  NM_001100631      PRAMEF22
16    chr1   12793130       13435172  NM_001136561      HNRNPCL2
17    chr1   12793130       13435172  NM_001146181      HNRNPCL3
18    chr1   12793130       13435172  NM_001146344      PRAMEF11
19    chr1   12793130       13435172  NM_001291381     PRAMEF33P
20    chr1   12793130       13435172  NM_001294139       PRAMEF1
21    chr1   12793130       13435172  NM_001300891      PRAMEF27
23    chr1   12793130       13435172  NM_001302551      HNRNPCL4
24    chr1   12793130       13435172  NM_001306072      PRAMEF26
25    chr1   12793130       13435172  NM_001310134      PRAMEF25
27    chr1   12793130       13435172     NM_023014       PRAMEF2
28    chr1   12793130       13435172     NM_152290      C1orf158
29    chr1   12793130       13435172     NR_111945     PRAMEF36P
31    chr1  145341710      146863139  NM_001012758        NUDT17
32    chr1  145341710      146863139  NM_001039888      ANKRD34A
33    chr1  145341710      146863139  NM_001097612        GPR89A
34    chr1  145341710      146863139  NM_001101663        NBPF11
35    chr1  145341710      146863139  NM_001144829          FMO5
36    chr1  145341710      146863139  NM_001184795        PEX11B
37    chr1  145341710      146863139  NM_001201325         PDZK1
..     ...        ...            ...           ...           ...
54    chr1  145341710      146863139     NM_007053         CD160
55    chr1  145341710      146863139     NM_014455        RNF115
56    chr1  145341710      146863139     NM_032305       POLR3GL
57    chr1  145341710      146863139     NM_145277          HFE2
58    chr1  145341710      146863139     NM_153713         LIX1L
59    chr1  145341710      146863139     NR_002305       PDIA3P1
60    chr1  145341710      146863139     NR_002328        GNRHR2
61    chr1  145341710      146863139     NR_024442     LOC728989
62    chr1  145341710      146863139     NR_038423     LINC00624
64    chr1  145341710      146863139     NR_103466       NBPF13P
67    chr1  145341710      146863139     NR_104217       NBPF25P
69    chr1  145341710      146863139     NR_106794       MIR6736
71    chr1  145341710      146863139     NR_111936       PDZK1P1
72    chr1  145341710      146863139     NR_121645       RNVU1-8
73    chr1  145341710      146863139     NR_125967  LOC101928979
74    chr1  145341710      146863139     NR_135559  LOC100505824
75   chr12   17785919       17891513     NR_039770       MIR3974
76   chr14   21861018       22057993  NM_001005465        OR10G3
77   chr14   21861018       22057993  NM_001163380         RAB2B
78   chr14   21861018       22057993  NM_001170629          CHD8
79   chr14   21861018       22057993  NM_001303523          TOX4
80   chr14   21861018       22057993     NM_019852        METTL3
83   chr14   21861018       22057993     NR_002916        SNORD8
84   chr14   21861018       22057993     NR_111966         SALL2
86   chr15   77814660       77941864  NM_001301186        LINGO1
96   chr15   77814660       77941864     NR_045123    LINGO1-AS1
97   chr15   77814660       77941864     NR_135692  LOC101929457
98    chr3  193126006      193255189     NM_032279       ATP13A4
99    chr4  169251201      169433087  NM_001012967        DDX60L
100   chr4  169251201      169433087  NM_001166108         PALLD

[72 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   98220582       98649467     NM_183376        ARRDC4
1   chr15   98220582       98649467     NR_024172     LINC00923
2   chr15   98220582       98649467     NR_120325     LINC01582
3   chr16   21473616       21644931  NM_001077180        METTL9
5   chr16   21473616       21644931     NR_002594      SLC7A5P2
6   chr16   21473616       21644931     NR_027155        SMG1P3
7   chr16   21473616       21644931     NR_049833     MIR3680-2
8   chr16   21473616       21644931     NR_110930  LOC101927814
9    chr9   11886850       13510806     NM_000550         TYRP1
10   chr9   11886850       13510806  NM_001261407          MPDZ
12   chr9   11886850       13510806     NM_203403       LURAP1L
13   chr9   11886850       13510806     NR_033863      FLJ41200
14   chr9   11886850       13510806     NR_125775   LURAP1L-AS1
15   chr9   11886850       13510806     NR_132976      SNORD137,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12     964288        1154140  NM_001297419     RAD52
4  chr12     964288        1154140  NM_001301248      ERC1
5  chr12     964288        1154140     NM_018979      WNK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16385555       16563272  NM_001004067         NOMO3
1   chr16   16385555       16563272  NM_001282511        NPIPA8
2   chr16   16385555       16563272     NR_036140     MIR3179-1
3   chr16   16385555       16563272     NR_036141     MIR3180-1
4   chr16   16385555       16563272     NR_036142     MIR3180-2
5   chr16   16385555       16563272     NR_036447        PKD1P1
6   chr16   16385555       16563272     NR_103772  LOC100288162
7   chr16   16385555       16563272     NR_106766     MIR6511A1
8   chr16   16385555       16563272     NR_106971     MIR6511A4
9   chr16   16385555       16563272     NR_107060     MIR6770-2
10  chr16   16385555       16563272     NR_128713     MIR3670-4
11   chr7  110503100      110612633  NM_001244606        IMMP2L
13   chr9   38955230       39229207     NM_033655       CNTNAP3
14   chr9   43134938       43246308     NR_027472     LOC642929,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143500559      144385396  NM_001123068       PPIAL4G
1   chr1  143500559      144385396  NM_001135789       PPIAL4C
2   chr1  143500559      144385396  NM_001278267        NBPF20
3   chr1  143500559      144385396  NM_001287385        FAM72C
4   chr1  143500559      144385396  NM_001345942        FAM72D
8   chr1  143500559      144385396     NR_024511     LINC00623
10  chr1  143500559      144385396     NR_104014     LINC01138
11  chr1  143500559      144385396     NR_106967       MIR6077
12  chr1  143500559      144385396     NR_111930  LOC100132057
13  chr1  143500559      144385396     NR_111953     LINC00869,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21767540       21882757  NM_001170629      CHD8
1   chr14   21767540       21882757     NM_007192   SUPT16H
2   chr14   21767540       21882757     NM_020366   RPGRIP1
4   chr14   21767540       21882757     NR_002916    SNORD8
5   chr14   21767540       21882757     NR_003029    SNORD9
6   chr21   22547560       22765292     NM_004540     NCAM2
7    chr7  110604474      111115024  NM_001099658     LRRN3
8    chr7  110604474      111115024  NM_001244606    IMMP2L
10   chr8  100565889      100673127     NM_017890    VPS13B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63151873       63291520     NR_047029  LINC00448
1   chr14   21717532       21942435  NM_001163380      RAB2B
2   chr14   21717532       21942435  NM_001170629       CHD8
3   chr14   21717532       21942435     NM_007192    SUPT16H
4   chr14   21717532       21942435     NM_020366    RPGRIP1
6   chr14   21717532       21942435     NM_031314     HNRNPC
8   chr14   21717532       21942435     NR_002916     SNORD8
9   chr14   21717532       21942435     NR_003029     SNORD9
10  chr14   21746924       22174821  NM_001001912      OR4E2
11  chr14   21746924       22174821  NM_001005465     OR10G3
12  chr14   21746924       22174821  NM_001005466     OR10G2
13  chr14   21746924       22174821  NM_001163380      RAB2B
14  chr14   21746924       22174821  NM_001170629       CHD8
15  chr14   21746924       22174821  NM_001303523       TOX4
16  chr14   21746924       22174821  NM_001317107      OR4E1
17  chr14   21746924       22174821     NM_007192    SUPT16H
18  chr14   21746924       22174821     NM_019852     METTL3
19  chr14   21746924       22174821     NM_020366    RPGRIP1
22  chr14   21746924       22174821     NR_002916     SNORD8
23  chr14   21746924       22174821     NR_003029     SNORD9
24  chr14   21746924       22174821     NR_111966      SALL2
26   chr4   69249159       69386842     NM_014058  TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   21709162       24236831     NM_000257           MYH7
1   chr14   21709162       24236831  NM_001001912          OR4E2
2   chr14   21709162       24236831  NM_001005465         OR10G3
3   chr14   21709162       24236831  NM_001005466         OR10G2
4   chr14   21709162       24236831  NM_001039619          PRMT5
5   chr14   21709162       24236831  NM_001042635           NGDN
6   chr14   21709162       24236831  NM_001099780         PSMB11
7   chr14   21709162       24236831  NM_001126105         SLC7A7
9   chr14   21709162       24236831  NM_001130706       C14orf93
10  chr14   21709162       24236831  NM_001130725          PSMB5
12  chr14   21709162       24236831  NM_001146028           JPH4
13  chr14   21709162       24236831  NM_001163380          RAB2B
14  chr14   21709162       24236831  NM_001164815          ACIN1
16  chr14   21709162       24236831  NM_001170629           CHD8
17  chr14   21709162       24236831  NM_001199839         BCL2L2
18  chr14   21709162       24236831  NM_001199864  BCL2L2-PABPN1
19  chr14   21709162       24236831  NM_001256323          THTPA
20  chr14   21709162       24236831  NM_001267036         SLC7A8
22  chr14   21709162       24236831  NM_001276318        PPP1R3E
23  chr14   21709162       24236831  NM_001277174            EFS
24  chr14   21709162       24236831  NM_001282322        RNF212B
25  chr14   21709162       24236831  NM_001282475          AP1G2
27  chr14   21709162       24236831  NM_001289050       SLC22A17
28  chr14   21709162       24236831  NM_001289097          AJUBA
29  chr14   21709162       24236831  NM_001303523           TOX4
30  chr14   21709162       24236831  NM_001317107          OR4E1
31  chr14   21709162       24236831  NM_001318835          DHRS2
32  chr14   21709162       24236831  NM_001318870         MRPL52
33  chr14   21709162       24236831  NM_001329226          LRP10
34  chr14   21709162       24236831     NM_001344           DAD1
..    ...        ...            ...           ...            ...
53  chr14   21709162       24236831     NM_022789           IL25
54  chr14   21709162       24236831     NM_031314         HNRNPC
57  chr14   21709162       24236831     NM_033400          ZFHX2
58  chr14   21709162       24236831     NM_138460          CMTM5
60  chr14   21709162       24236831     NM_173527           REM2
63  chr14   21709162       24236831     NR_002916         SNORD8
64  chr14   21709162       24236831     NR_003029         SNORD9
65  chr14   21709162       24236831     NR_029595        MIR208A
66  chr14   21709162       24236831     NR_030624        MIR208B
67  chr14   21709162       24236831     NR_039856        MIR4707
71  chr14   21709162       24236831     NR_110002   LOC101926933
73  chr14   21709162       24236831     NR_110555   LOC102724814
74  chr14   21709162       24236831     NR_111966          SALL2
76  chr14   21709162       24236831     NR_120599      PRMT5-AS1
77  chr14   21709162       24236831     NR_126491           MHRT
78  chr14   47869037       48076951  NM_001113498          MDGA2
79  chr15   65425540       65541217     NM_003613           CILP
80  chr15   65425540       65541217     NM_005707          PDCD7
81  chr15   65425540       65541217     NM_006660           CLPX
82  chr22   17190682       17372143     NM_175878           XKR3
83  chr22   17190682       17372143     NR_003607        HSFY1P1
84  chr22   17190682       17372143     NR_134584   LOC101929350
85   chr3    2193146        3941667  NM_001173482           CRBN
86   chr3    2193146        3941667  NM_001206955          CNTN4
88   chr3    2193146        3941667  NM_001302946          TRNT1
89   chr3    2193146        3941667  NM_001324189          LRRN1
91   chr3    2193146        3941667     NM_175726          IL5RA
94   chr3    2193146        3941667     NR_046554      CNTN4-AS1
95   chr6   92057466       92414948     NR_039786        MIR4643
96   chr6   92057466       92414948     NR_104154          CASC6

[74 rows x 5 columns],   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2  186244541      187539819  NM_001144999         ITGAV
2  chr2  186244541      187539819     NM_018471        ZC3H15
3  chr2  186244541      187539819     NM_173651         FSIP2
4  chr2  186244541      187539819     NR_110214  LOC101927196
7  chr2  186244541      187539819     NR_110218     LINC01473
8  chr2  186244541      187539819     NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  243479976      243585095     NM_006642       SDCCAG8
1    chr1  243479976      243585095     NR_039824       MIR4677
2   chr11   89077370       89289207  NM_001143837          NOX4
8   chr14   45720257       45976718     NM_018353      MIS18BP1
9   chr16   16284907       16476861  NM_001004067         NOMO3
10  chr16   16284907       16476861  NM_001079528         ABCC6
12  chr16   16284907       16476861  NM_001282511        NPIPA8
13  chr16   16284907       16476861     NR_036140     MIR3179-1
14  chr16   16284907       16476861     NR_036141     MIR3180-1
15  chr16   16284907       16476861     NR_036142     MIR3180-2
16  chr16   16284907       16476861     NR_036447        PKD1P1
17  chr16   16284907       16476861     NR_103772  LOC100288162
18  chr16   16284907       16476861     NR_106766     MIR6511A1
19  chr16   16284907       16476861     NR_106971     MIR6511A4
20  chr16   16284907       16476861     NR_107060     MIR6770-2
21  chr16   16284907       16476861     NR_128713     MIR3670-4
22   chr3    6293911        6687857     NR_110123      GRM7-AS3
23   chr5   17694998       17895306     NR_134286     LOC646241
25   chr7    8608600        8844094     NM_152745         NXPH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143087772      143336389     NR_110761  LOC102723769
1   chr14   21769956       22082643  NM_001005465        OR10G3
2   chr14   21769956       22082643  NM_001163380         RAB2B
3   chr14   21769956       22082643  NM_001170629          CHD8
4   chr14   21769956       22082643  NM_001303523          TOX4
5   chr14   21769956       22082643     NM_007192       SUPT16H
6   chr14   21769956       22082643     NM_019852        METTL3
7   chr14   21769956       22082643     NM_020366       RPGRIP1
10  chr14   21769956       22082643     NR_002916        SNORD8
11  chr14   21769956       22082643     NR_003029        SNORD9
12  chr14   21769956       22082643     NR_111966         SALL2
14  chr15   28450022       28597116     NM_004667         HERC2
15  chr15  100180930      100526599  NM_001130928         MEF2A
16  chr15  100180930      100526599  NM_001284417        LYSMD4
19  chr15  100180930      100526599     NM_139057      ADAMTS17
20  chr15  100180930      100526599     NR_003260       DNM1P46
21  chr15  100180930      100526599     NR_135737     LOC400464,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21763507       21886876  NM_001170629      CHD8
1  chr14   21763507       21886876     NM_007192   SUPT16H
2  chr14   21763507       21886876     NM_020366   RPGRIP1
4  chr14   21763507       21886876     NR_002916    SNORD8
5  chr14   21763507       21886876     NR_003029    SNORD9
6   chr6    1848570        1989391  NM_001253846      GMDS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143674325      143858675  NM_001123068       PPIAL4G
1    chr1  143674325      143858675     NR_104014     LINC01138
2    chr1  143674325      143858675     NR_111930  LOC100132057
3   chr12   72613922       72731938     NM_013381         TRHDE
4   chr12   72613922       72731938     NR_026836     TRHDE-AS1
6   chr14   21769656       21905420  NM_001170629          CHD8
7   chr14   21769656       21905420     NM_007192       SUPT16H
8   chr14   21769656       21905420     NM_020366       RPGRIP1
10  chr14   21769656       21905420     NR_002916        SNORD8
11  chr14   21769656       21905420     NR_003029        SNORD9
12  chr14   37627239       37728942  NM_001171170      SLC25A21
13  chr14   37627239       37728942  NM_001195296        MIPOL1
14  chr14   37627239       37728942     NR_033240  SLC25A21-AS1
15  chr15   30302659       30515610  NM_001282472       GOLGA8J
16  chr15   30302659       30515610     NR_026771  DKFZP434L187
17  chr15   30302659       30515610     NR_026859        ULK4P3
18  chr15   30302659       30515610     NR_033933       GOLGA8T
19  chr16   18144231       18548262  NM_001004060         NOMO2
20  chr16   18144231       18548262  NM_001282511        NPIPA8
21  chr16   18144231       18548262     NR_036140     MIR3179-1
22  chr16   18144231       18548262     NR_036142     MIR3180-2
23  chr16   18144231       18548262     NR_036144     MIR3180-3
24  chr16   18144231       18548262     NR_037442     MIR3670-1
25  chr16   18144231       18548262     NR_103772  LOC100288162
26  chr16   18144231       18548262     NR_106971     MIR6511A4
27  chr16   18144231       18548262     NR_107060     MIR6770-2
28  chr17      96365         202588  NM_001190411        RPH3AL
29  chr17      96365         202588     NR_040011  LOC100506388
30   chr2   78031638       78204559     NR_024342        SNAR-H
31   chr2   78031638       78204559     NR_110286  LOC101927926
32   chr2   78031638       78204559     NR_110288  LOC101927967
33   chr2  242421875      242710584  NM_001164356         THAP4
34   chr2  242421875      242710584  NM_001165031         DTYMK
35   chr2  242421875      242710584  NM_001271978         STK25
38   chr2  242421875      242710584  NM_001287249        D2HGDH
39   chr2  242421875      242710584  NM_001330161          ING5
41   chr2  242421875      242710584     NM_014808         FARP2
44   chr2  242421875      242710584     NM_032515           BOK
45   chr2  242421875      242710584     NM_178326         ATG4B
46   chr2  242421875      242710584     NR_033346       BOK-AS1
47   chr6   90275027       90568928  NM_001137667      CASP8AP2
48   chr6   90275027       90568928  NM_001242809        ANKRD6
51   chr6   90275027       90568928     NM_014611          MDN1
52   chr6   90275027       90568928     NM_020466         LYRM2
54   chr6   90275027       90568928     NR_111915  LOC101929057
55   chr9    1289200        2308081  NM_001289396       SMARCA2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   40741253       40938561  NM_001258419        LRRC4C
1   chr15   28632244       29301774  NM_001130414         APBA2
2   chr15   28632244       29301774  NM_001282468       GOLGA8M
3   chr15   28632244       29301774     NR_026589       WHAMMP2
4   chr15   28632244       29301774     NR_033351       GOLGA8F
6   chr15   28632244       29301774     NR_033353       GOLGA8G
8   chr15   28632244       29301774     NR_036443       HERC2P9
9   chr15   28632244       29301774     NR_036475  LOC100289656
10  chr15   28632244       29301774     NR_037599     PDCD6IPP2
11  chr15   28632244       29301774     NR_039734     MIR4509-3
13  chr15   28632244       29301774     NR_047567     GOLGA6L7P
14  chr20   14863351       14986577     NM_080676       MACROD2
15  chr20   14863351       14986577     NR_037841   MACROD2-AS1
17   chr7  117532997      117893812     NM_016200          LSM8
18   chr7  117532997      117893812     NM_019644        ANKRD7
19   chr8    2091089        2222015     NM_003970         MYOM2,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr16   14981494       17218830  NM_001004067              NOMO3
1   chr16   14981494       17218830  NM_001040113              MYH11
2   chr16   14981494       17218830  NM_001079528              ABCC6
3   chr16   14981494       17218830  NM_001128423             MPV17L
4   chr16   14981494       17218830  NM_001142469           C16orf45
5   chr16   14981494       17218830  NM_001143979               NDE1
7   chr16   14981494       17218830  NM_001184998           KIAA0430
8   chr16   14981494       17218830  NM_001270767              NTAN1
9   chr16   14981494       17218830  NM_001277325             NPIPA5
10  chr16   14981494       17218830  NM_001282511             NPIPA8
11  chr16   14981494       17218830  NM_001285445             PDXDC1
16  chr16   14981494       17218830  NM_001301064               RRN3
18  chr16   14981494       17218830     NM_004996              ABCC1
19  chr16   14981494       17218830     NM_006985             NPIPA1
20  chr16   14981494       17218830     NM_014287              NOMO1
22  chr16   14981494       17218830     NM_022166              XYLT1
24  chr16   14981494       17218830     NR_030159             MIR484
25  chr16   14981494       17218830     NR_036140          MIR3179-1
27  chr16   14981494       17218830     NR_036141          MIR3180-1
29  chr16   14981494       17218830     NR_036142          MIR3180-2
31  chr16   14981494       17218830     NR_036447             PKD1P1
32  chr16   14981494       17218830     NR_037466          MIR3180-4
33  chr16   14981494       17218830     NR_103772       LOC100288162
35  chr16   14981494       17218830     NR_106761            MIR6506
36  chr16   14981494       17218830     NR_106766          MIR6511A1
37  chr16   14981494       17218830     NR_106775          MIR6511B1
38  chr16   14981494       17218830     NR_106965          MIR6511B2
39  chr16   14981494       17218830     NR_106970          MIR6511A3
40  chr16   14981494       17218830     NR_106971          MIR6511A4
41  chr16   14981494       17218830     NR_107060          MIR6770-2
43  chr16   14981494       17218830     NR_123721      PKD1P6-NPIPP1
45  chr16   14981494       17218830     NR_125434       LOC100505915
46  chr16   14981494       17218830     NR_128713          MIR3670-4
48  chr16   14981494       17218830     NR_130755              FOPNL
49  chr22   17074201       17384390     NM_175878               XKR3
50  chr22   17074201       17384390     NR_001591             TPTEP1
51  chr22   17074201       17384390     NR_003607            HSFY1P1
52  chr22   17074201       17384390     NR_040115  ANKRD62P1-PARP4P3
53  chr22   17074201       17384390     NR_134584       LOC101929350
54   chr8  111889948      112006998     NR_125416          LINC01608,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21766848       21918328  NM_001170629          CHD8
1   chr14   21766848       21918328     NM_007192       SUPT16H
2   chr14   21766848       21918328     NM_020366       RPGRIP1
4   chr14   21766848       21918328     NR_002916        SNORD8
5   chr14   21766848       21918328     NR_003029        SNORD9
6   chr14   42141628       42244374  NM_001346175         LRFN5
7   chr18   67050358       67271982     NM_152721          DOK6
8   chr18   67050358       67271982     NR_134579  LOC105372179
9   chr19   47820384       47998718  NM_001009813         MEIS3
10  chr19   47820384       47998718  NM_001271749         C5AR2
12  chr19   47820384       47998718  NM_001291296          KPTN
15  chr19   47820384       47998718     NM_001736         C5AR1
16  chr19   47820384       47998718     NM_014681         DHX34
17  chr19   47820384       47998718     NM_015063        SLC8A2
19  chr19   47820384       47998718     NR_038452      NAPA-AS1
20  chr19   47820384       47998718     NR_038457          NAPA
21   chr9   41799507       42182532     NR_003670        FGF7P3
22   chr9   41799507       42182532     NR_015363         GLIDR
25   chr9   41799507       42182532     NR_126048  LOC102724238
26   chr9   41799507       42182532     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37361939       37880158     NM_052997      ANKRD30A
1   chr10   37361939       37880158     NR_104061     LINC00993
2   chr16   16277474       16509103  NM_001004067         NOMO3
3   chr16   16277474       16509103  NM_001079528         ABCC6
5   chr16   16277474       16509103  NM_001282511        NPIPA8
6   chr16   16277474       16509103     NR_036140     MIR3179-1
7   chr16   16277474       16509103     NR_036141     MIR3180-1
8   chr16   16277474       16509103     NR_036142     MIR3180-2
9   chr16   16277474       16509103     NR_036447        PKD1P1
10  chr16   16277474       16509103     NR_103772  LOC100288162
11  chr16   16277474       16509103     NR_106766     MIR6511A1
12  chr16   16277474       16509103     NR_106971     MIR6511A4
13  chr16   16277474       16509103     NR_107060     MIR6770-2
14  chr16   16277474       16509103     NR_128713     MIR3670-4
15  chr17   48062296       48168729     NM_002204         ITGA3
16  chr17   48062296       48168729     NM_005220          DLX3
17  chr17   48062296       48168729     NR_038230     LOC284080
18   chr6  162819614      162921290     NM_013988         PARK2
19   chr7  133198809      133387245     NM_021807         EXOC4,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11  131361354      131485394  NM_001048209           NTM
1  chr11  131361354      131485394     NR_110140  LOC101929653
2  chr20   14584335       14729227     NM_080676       MACROD2
3  chr20   14584335       14729227     NR_104193   MACROD2-IT1
4  chr22   17245020       17350724     NM_175878          XKR3
5  chr22   17245020       17350724     NR_003607       HSFY1P1
6   chr4   94201198       94345758     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21634200       21872886  NM_001170629          CHD8
1   chr14   21634200       21872886     NM_007192       SUPT16H
2   chr14   21634200       21872886     NM_020366       RPGRIP1
4   chr14   21634200       21872886     NM_031314        HNRNPC
5   chr14   21634200       21872886     NR_002916        SNORD8
6   chr14   21634200       21872886     NR_003029        SNORD9
7   chr14   21634200       21872886     NR_038970     LINC00641
9   chr15   97739114       98458271     NR_024172     LINC00923
10  chr15   97739114       98458271     NR_110756  LOC101927310
11  chr15   97739114       98458271     NR_120324  LOC101927286
12   chr2  134085527      134398891     NM_207363        NCKAP5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72550805       72712606     NM_013381         TRHDE
1   chr12   72550805       72712606     NR_026836     TRHDE-AS1
3   chr13   19662805       20089416  NM_001271850         TPTE2
4   chr13   19662805       20089416     NM_006001        TUBA3C
6   chr13   19662805       20089416     NR_027248     ANKRD26P3
7   chr13   19662805       20089416     NR_034026     LINC00421
10  chr13   19662805       20089416     NR_126054  LOC101928697
11  chr14   21809955       22012609  NM_001163380         RAB2B
12  chr14   21809955       22012609  NM_001170629          CHD8
13  chr14   21809955       22012609  NM_001303523          TOX4
14  chr14   21809955       22012609     NM_007192       SUPT16H
15  chr14   21809955       22012609     NM_019852        METTL3
16  chr14   21809955       22012609     NM_020366       RPGRIP1
19  chr14   21809955       22012609     NR_002916        SNORD8
20  chr14   21809955       22012609     NR_003029        SNORD9
21  chr14   21809955       22012609     NR_111966         SALL2
23  chr16   68766296       69055005  NM_001317184          CDH1
24  chr16   68766296       69055005     NM_024562        TANGO6
25  chr16   68766296       69055005     NR_106988     MIR7641-2
26   chr2   97143972       97302601  NM_001115016        KANSL3
27   chr2   97143972       97302601  NM_001285485        NEURL3
28   chr2   97143972       97302601  NM_001319085        ARID5A
32   chr2   97143972       97302601     NR_135564  LOC105373496
33   chr3  160116174      160621758  NM_001190241         IFT80
34   chr3  160116174      160621758  NM_001288753          SMC4
35   chr3  160116174      160621758  NM_001317912         PPM1L
36   chr3  160116174      160621758     NM_002268         KPNA4
38   chr3  160116174      160621758     NM_025047         ARL14
40   chr3  160116174      160621758     NM_173084        TRIM59
41   chr3  160116174      160621758     NR_003001       SCARNA7
42   chr3  160116174      160621758     NR_029525       MIR16-2
43   chr3  160116174      160621758     NR_029663        MIR15B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  107971316      108118204  NM_001079874          VAV3
1    chr1  107971316      108118204  NM_001113228         NTNG1
5   chr11    7632195        7769916  NM_001256568       PPFIBP2
7   chr11    7632195        7769916  NM_001302826        CYB5R2
11  chr11    7632195        7769916     NM_198185         OVCH2
12  chr15   20942037       21148357  NM_001277303        POTEB2
13  chr15   20942037       21148357     NM_207355        POTEB3
14  chr15   20942037       21148357     NR_027992        NBEAP1
15  chr15   20942037       21148357     NR_028506         NF1P2
16  chr15   20942037       21148357     NR_036062     MIR3118-2
17  chr15   20942037       21148357     NR_040094     LINC01193
18  chr15   20942037       21148357     NR_049895     MIR5701-2
20  chr16   18426451       18546396  NM_001004060         NOMO2
21  chr16   18426451       18546396  NM_001282511        NPIPA8
22  chr16   18426451       18546396     NR_036140     MIR3179-1
23  chr16   18426451       18546396     NR_036142     MIR3180-2
24  chr16   18426451       18546396     NR_036144     MIR3180-3
25  chr16   18426451       18546396     NR_037442     MIR3670-1
26  chr16   18426451       18546396     NR_103772  LOC100288162
27  chr16   18426451       18546396     NR_106971     MIR6511A4
28  chr16   18426451       18546396     NR_107060     MIR6770-2
29   chr3   60312174       60481554  NM_001320899          FHIT
30   chr7  110502639      110607240  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   85981027       86108253     NR_046989     LINC00351
1   chr16   16390563       16523579  NM_001282511        NPIPA8
2   chr16   16390563       16523579     NR_036140     MIR3179-1
3   chr16   16390563       16523579     NR_036141     MIR3180-1
4   chr16   16390563       16523579     NR_036142     MIR3180-2
5   chr16   16390563       16523579     NR_036447        PKD1P1
6   chr16   16390563       16523579     NR_103772  LOC100288162
7   chr16   16390563       16523579     NR_106766     MIR6511A1
8   chr16   16390563       16523579     NR_106971     MIR6511A4
9   chr16   16390563       16523579     NR_107060     MIR6770-2
10  chr16   16390563       16523579     NR_128713     MIR3670-4
11  chr18   61831568       62215094     NR_033881     LOC284294
12  chr18   61831568       62215094     NR_033983     LINC01538
13  chr22   19900383       20126131     NM_000754          COMT
16  chr22   19900383       20126131  NM_001190326         DGCR8
17  chr22   19900383       20126131  NM_001278639        RANBP1
20  chr22   19900383       20126131  NM_001282512        TXNRD2
21  chr22   19900383       20126131  NM_001283116        TANGO2
24  chr22   19900383       20126131     NM_001670         ARVCF
27  chr22   19900383       20126131     NM_013373        ZDHHC8
28  chr22   19900383       20126131     NM_022727        TRMT2A
29  chr22   19900383       20126131     NR_029706        MIR185
30  chr22   19900383       20126131     NR_031706       MIR1306
31  chr22   19900383       20126131     NR_037412       MIR3618
32  chr22   19900383       20126131     NR_039918       MIR4761
33  chr22   19900383       20126131     NR_106874       MIR6816
34   chr6  101421539      102649881     NM_021956         GRIK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12762084       13315980  NM_001009611       PRAMEF4
1    chr1   12762084       13315980  NM_001010889       PRAMEF6
2    chr1   12762084       13315980  NM_001010890       PRAMEF9
3    chr1   12762084       13315980  NM_001012276       PRAMEF8
4    chr1   12762084       13315980  NM_001013407       PRAMEF5
5    chr1   12762084       13315980  NM_001013631      HNRNPCL1
6    chr1   12762084       13315980  NM_001080830      PRAMEF12
7    chr1   12762084       13315980  NM_001099850      PRAMEF18
8    chr1   12762084       13315980  NM_001100631      PRAMEF22
9    chr1   12762084       13315980  NM_001103170       AADACL3
10   chr1   12762084       13315980  NM_001136561      HNRNPCL2
11   chr1   12762084       13315980  NM_001146181      HNRNPCL3
12   chr1   12762084       13315980  NM_001146344      PRAMEF11
13   chr1   12762084       13315980  NM_001294139       PRAMEF1
14   chr1   12762084       13315980  NM_001302551      HNRNPCL4
15   chr1   12762084       13315980  NM_001306072      PRAMEF26
16   chr1   12762084       13315980  NM_001310134      PRAMEF25
18   chr1   12762084       13315980     NM_023014       PRAMEF2
19   chr1   12762084       13315980     NM_152290      C1orf158
20   chr1   12762084       13315980     NR_111945     PRAMEF36P
22  chr10   67598252       67865193  NM_001127384        CTNNA3
24   chr2   52904630       53019009     NR_039630       MIR4431
25  chr22   17249102       17780552  NM_001037814          GAB4
26  chr22   17249102       17780552  NM_001163079         CECR6
27  chr22   17249102       17780552  NM_001282227         CECR1
29  chr22   17249102       17780552  NM_001289905        IL17RA
30  chr22   17249102       17780552     NM_017829         CECR5
33  chr22   17249102       17780552     NM_175878          XKR3
35  chr22   17249102       17780552     NR_003607       HSFY1P1
36  chr22   17249102       17780552     NR_015352         CECR7
37  chr22   17249102       17780552     NR_024482     CECR5-AS1
38  chr22   17249102       17780552     NR_038398         CECR3
39  chr22   17249102       17780552     NR_103793  LOC100996342
40   chr3   60240139       60379025  NM_001320899          FHIT
41   chr3  131262583      131851988  NM_001289112         CPNE4
44   chr3  131262583      131851988     NR_049890       MIR5704
45   chr4    8592965        8720954  NM_001014447           CPZ,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr13   54835056       55079474     NR_031628     MIR1297
1   chr15   59932895       60045449  NM_001320674       BNIP2
3   chr15   59932895       60045449  NM_001320929      GTF2A2
6   chr17   48319943       48443204  NM_001168215      TMEM92
7   chr17   48319943       48443204     NM_022167       XYLT2
9   chr17   48319943       48443204     NR_125805  TMEM92-AS1
10   chr2  110163603      110364343  NM_001099289      SH3RF3
11   chr2  110163603      110364343  NM_001321504      SEPT10
13  chr22   18993166       19218069  NM_001184781       DGCR2
14  chr22   18993166       19218069  NM_001256534     SLC25A1
15  chr22   18993166       19218069     NM_001835      CLTCL1
16  chr22   18993166       19218069     NM_005315        GSC2
18  chr22   18993166       19218069     NM_022719      DGCR14
19  chr22   18993166       19218069     NM_053006       TSSK2
20  chr22   18993166       19218069     NR_024157      DGCR11
21  chr22   18993166       19218069     NR_024159       DGCR9
22  chr22   18993166       19218069     NR_026651      DGCR10
23  chr22   18993166       19218069     NR_103767   LINC01311
24  chr22   18993166       19218069     NR_110533       DGCR5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89120636       89457532  NM_001143837          NOX4
1   chr11   89120636       89457532  NM_001271942        TRIM77
6   chr11   89120636       89457532     NM_153696        FOLH1B
8   chr14   21812726       22152372  NM_001001912         OR4E2
9   chr14   21812726       22152372  NM_001005465        OR10G3
10  chr14   21812726       22152372  NM_001005466        OR10G2
11  chr14   21812726       22152372  NM_001163380         RAB2B
12  chr14   21812726       22152372  NM_001170629          CHD8
13  chr14   21812726       22152372  NM_001303523          TOX4
14  chr14   21812726       22152372  NM_001317107         OR4E1
15  chr14   21812726       22152372     NM_007192       SUPT16H
16  chr14   21812726       22152372     NM_019852        METTL3
17  chr14   21812726       22152372     NM_020366       RPGRIP1
20  chr14   21812726       22152372     NR_002916        SNORD8
21  chr14   21812726       22152372     NR_003029        SNORD9
22  chr14   21812726       22152372     NR_111966         SALL2
24   chr2   97461514       97610725  NM_001122646       FAM178B
26   chr2   97461514       97610725     NM_016466       ANKRD39
28   chr2   97461514       97610725     NM_017623         CNNM3
29   chr2   97461514       97610725     NM_017789        SEMA4C
30   chr2   97461514       97610725     NM_020184         CNNM4
31   chr2   97461514       97610725     NM_144994       ANKRD23
32   chr2   97461514       97610725     NR_036074       MIR3127
33   chr2   97461514       97610725     NR_110209  LOC101927053
34   chr7   77744129       79042651     NM_012301         MAGI2
35   chr7   77744129       79042651     NR_003680     RPL13AP17
36   chr7   77744129       79042651     NR_046689     MAGI2-AS2,     chrom  cnv_start  cnv_terminate       tx_name        gene_name
0    chr1  143145781      144368646  NM_001123068          PPIAL4G
1    chr1  143145781      144368646  NM_001135789          PPIAL4C
2    chr1  143145781      144368646  NM_001278267           NBPF20
3    chr1  143145781      144368646  NM_001287385           FAM72C
4    chr1  143145781      144368646  NM_001345942           FAM72D
8    chr1  143145781      144368646     NR_024511        LINC00623
10   chr1  143145781      144368646     NR_104014        LINC01138
11   chr1  143145781      144368646     NR_106967          MIR6077
12   chr1  143145781      144368646     NR_110761     LOC102723769
13   chr1  143145781      144368646     NR_111930     LOC100132057
14   chr1  143145781      144368646     NR_111953        LINC00869
16  chr11   99205315       99315284  NM_001243270            CNTN5
18  chr14   21745755       21858638  NM_001170629             CHD8
19  chr14   21745755       21858638     NM_007192          SUPT16H
20  chr14   21745755       21858638     NM_020366          RPGRIP1
22  chr17   47943396       48064642     NM_001934             DLX4
24   chr2  110192652      110783881  NM_001037866            RGPD6
25   chr2  110192652      110783881  NM_001099289           SH3RF3
27   chr2  110192652      110783881  NM_001205288            LIMS4
28   chr2  110192652      110783881  NM_001321504           SEPT10
30   chr2  110192652      110783881     NM_005054            RGPD5
31   chr2  110192652      110783881     NM_023016           SOWAHC
32   chr2  110192652      110783881     NR_027142        LOC440895
33   chr2  110192652      110783881     NR_027145  LIMS3-LOC440895
34   chr2  110192652      110783881     NR_027467            LIMS3
35   chr2  110192652      110783881     NR_046110        LINC01123,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   59134041       59466064  NM_001085487      MYSM1
1    chr1   59134041       59466064     NM_002228        JUN
2    chr1   59134041       59466064     NR_034014  LINC01135
3    chr1  144667971      144941384  NM_001002811    PDE4DIP
7    chr1  144667971      144941384  NM_001277444      NBPF9
8    chr1  144667971      144941384  NM_001278267     NBPF20
9    chr1  144667971      144941384     NR_102405      NBPF8
10  chr10   37365573       37523527     NM_052997   ANKRD30A
11  chr14   21882402       22039413  NM_001005465     OR10G3
12  chr14   21882402       22039413  NM_001163380      RAB2B
13  chr14   21882402       22039413  NM_001170629       CHD8
14  chr14   21882402       22039413  NM_001303523       TOX4
15  chr14   21882402       22039413     NM_019852     METTL3
18  chr14   21882402       22039413     NR_111966      SALL2
20  chr19   33761194       33995057     NM_000285       PEPD
21  chr19   33761194       33995057  NM_001252296      CEBPG
22  chr19   33761194       33995057  NM_001285829      CEBPA
24  chr19   33761194       33995057     NR_026887  CEBPA-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   48033995       48220210  NM_001199898          PDK2
3   chr17   48033995       48220210  NM_001257359        SAMD14
4   chr17   48033995       48220210     NM_001934          DLX4
5   chr17   48033995       48220210     NM_002204         ITGA3
7   chr17   48033995       48220210     NM_005220          DLX3
8   chr17   48033995       48220210     NM_032595       PPP1R9B
10  chr17   48033995       48220210     NR_038230     LOC284080
11  chr20   14668787       14998089     NM_080676       MACROD2
12  chr20   14668787       14998089     NR_037841   MACROD2-AS1
14  chr22   17173811       17951732  NM_001037814          GAB4
15  chr22   17173811       17951732  NM_001163079         CECR6
16  chr22   17173811       17951732  NM_001282227         CECR1
18  chr22   17173811       17951732  NM_001289905        IL17RA
19  chr22   17173811       17951732  NM_001290046         CECR2
20  chr22   17173811       17951732     NM_017829         CECR5
23  chr22   17173811       17951732     NM_175878          XKR3
25  chr22   17173811       17951732     NR_003607       HSFY1P1
26  chr22   17173811       17951732     NR_015352         CECR7
27  chr22   17173811       17951732     NR_024482     CECR5-AS1
28  chr22   17173811       17951732     NR_038398         CECR3
29  chr22   17173811       17951732     NR_103793  LOC100996342
30  chr22   17173811       17951732     NR_134584  LOC101929350
31   chr7  124855010      125028657     NR_110183  LOC101928254
32   chr7  124855010      125028657     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15  100148207      100380708  NM_001130928      MEF2A
1   chr15  100148207      100380708  NM_001284417     LYSMD4
4   chr15  100148207      100380708     NR_003260    DNM1P46
5   chr15  100148207      100380708     NR_135737  LOC400464
6   chr16   16458885       17073378  NM_001282511     NPIPA8
7   chr16   16458885       17073378     NR_106971  MIR6511A4
8    chr4   69279676       69453576     NM_001077    UGT2B17
9    chr4   69279676       69453576     NM_014058  TMPRSS11E
10   chr4   71345755       71614267  NM_001037442      RUFY3
12   chr4   71345755       71614267  NM_001145006       MUC7
14   chr4   71345755       71614267  NM_001286731       AMTN
18   chr4   71345755       71614267     NM_016519       AMBN
19   chr4   71345755       71614267     NM_020368       UTP3
20   chr4   71345755       71614267     NM_031889       ENAM
21   chr4   71345755       71614267     NM_144646     JCHAIN
23   chr9   30221831       30442388     NR_046204  LINC01242,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21780331       21925768  NM_001170629      CHD8
1  chr14   21780331       21925768     NM_007192   SUPT16H
2  chr14   21780331       21925768     NM_020366   RPGRIP1
4  chr14   21780331       21925768     NR_002916    SNORD8
5  chr14   21780331       21925768     NR_003029    SNORD9
6   chr4   94128426       94229884     NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21775020       21894106  NM_001170629          CHD8
1   chr14   21775020       21894106     NM_007192       SUPT16H
2   chr14   21775020       21894106     NM_020366       RPGRIP1
4   chr14   21775020       21894106     NR_002916        SNORD8
5   chr14   21775020       21894106     NR_003029        SNORD9
6   chr15   28629194       28986948  NM_001282468       GOLGA8M
7   chr15   28629194       28986948     NR_026589       WHAMMP2
8   chr15   28629194       28986948     NR_033351       GOLGA8F
10  chr15   28629194       28986948     NR_033353       GOLGA8G
12  chr15   28629194       28986948     NR_036443       HERC2P9
13  chr15   28629194       28986948     NR_039734     MIR4509-3
15  chr20   14535062       14664036     NM_080676       MACROD2
16  chr20   14535062       14664036     NR_104193   MACROD2-IT1
17  chr21   22319003       22439852     NM_004540         NCAM2
18  chr21   40111436       40242246  NM_001256295          ETS2
20  chr21   40111436       40242246     NR_027065     LINC00114
23  chr21   40111436       40242246     NR_109926  LOC101928398
24   chr4   94119730       94251811     NM_001510         GRID2
25   chr9   41936006       42346431     NR_003670        FGF7P3
26   chr9   41936006       42346431     NR_015363         GLIDR
29   chr9   41936006       42346431     NR_126048  LOC102724238
30   chr9   41936006       42346431     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143697911      143812865  NM_001123068       PPIAL4G
1    chr1  143697911      143812865     NR_104014     LINC01138
2    chr1  143697911      143812865     NR_111930  LOC100132057
3   chr16   15368375       15770721  NM_001128423        MPV17L
4   chr16   15368375       15770721  NM_001142469      C16orf45
5   chr16   15368375       15770721  NM_001143979          NDE1
6   chr16   15368375       15770721  NM_001184998      KIAA0430
7   chr16   15368375       15770721  NM_001277325        NPIPA5
10  chr16   15368375       15770721     NR_030159        MIR484
11  chr16   15368375       15770721     NR_106761       MIR6506
12  chr18   63793285       64603566     NM_021153         CDH19
13   chr2   97251649       97354481  NM_001115016        KANSL3
14   chr2   97251649       97354481  NM_001293083        FER1L5
16  chr22   17235750       17717920  NM_001037814          GAB4
17  chr22   17235750       17717920  NM_001163079         CECR6
18  chr22   17235750       17717920  NM_001282227         CECR1
20  chr22   17235750       17717920  NM_001289905        IL17RA
21  chr22   17235750       17717920     NM_017829         CECR5
24  chr22   17235750       17717920     NM_175878          XKR3
26  chr22   17235750       17717920     NR_003607       HSFY1P1
27  chr22   17235750       17717920     NR_015352         CECR7
28  chr22   17235750       17717920     NR_024482     CECR5-AS1
29  chr22   17235750       17717920     NR_103793  LOC100996342
30   chr6   89414401       89592294  NM_001286428         RNGTT,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21837236       21939479  NM_001163380     RAB2B
1  chr14   21837236       21939479  NM_001170629      CHD8
2  chr14   21837236       21939479     NM_007192   SUPT16H
5  chr14   21837236       21939479     NR_002916    SNORD8
6  chr14   21837236       21939479     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48388568       49616910  NM_001005512        OR4A47
1   chr11   48388568       49616910  NM_001193472         FOLH1
2   chr11   48388568       49616910  NM_001206626       TRIM49B
3   chr11   48388568       49616910  NM_001206631       TRIM64C
4   chr11   48388568       49616910     NR_027044     LOC440040
5   chr14   21781010       21881284  NM_001170629          CHD8
6   chr14   21781010       21881284     NM_007192       SUPT16H
7   chr14   21781010       21881284     NM_020366       RPGRIP1
9   chr14   21781010       21881284     NR_002916        SNORD8
10  chr14   21781010       21881284     NR_003029        SNORD9
11   chr2   53539020       54165147  NM_001164165    GPR75-ASB3
12   chr2   53539020       54165147  NM_001201965          ASB3
13   chr2   53539020       54165147  NM_001346127         CHAC2
14   chr2   53539020       54165147     NM_006794         GPR75
15   chr2   53539020       54165147     NM_014614         PSME4
16   chr2   53539020       54165147     NM_015701        ERLEC1
18   chr2   53539020       54165147     NR_037453       MIR3682
19   chr3  162880946      163135915     NR_033945     LINC01192
20   chr5  106813969      107219065  NM_001163315        FBXL17
21   chr5  106813969      107219065     NM_001962         EFNA5
22   chr7   64040617       64181117  NM_001282360        ZNF107
23   chr7   64040617       64181117     NR_033245     LOC641746
24   chr7   64040617       64181117     NR_077227  LOC100128885
26   chr7   64040617       64181117     NR_106898       MIR6839
27   chr8   58100827       58458309     NR_026772     LINC00588
28   chr8   58100827       58458309     NR_038235     LINC01606
29   chr8   58100827       58458309     NR_038874     LOC286177
30   chr8   58100827       58458309     NR_125818  LOC101929488,     chrom  cnv_start  cnv_terminate       tx_name        gene_name
0   chr17   47875410       48028340  NM_001077503             TAC4
1   chr17   47875410       48028340  NM_001199158             KAT7
2   chr17   47875410       48028340  NM_001242791         FLJ45513
3    chr2  110156178      111567374     NM_000272            NPHP1
4    chr2  110156178      111567374  NM_001037866            RGPD6
6    chr2  110156178      111567374  NM_001099289           SH3RF3
9    chr2  110156178      111567374  NM_001142807            ACOXL
10   chr2  110156178      111567374  NM_001205288            LIMS4
12   chr2  110156178      111567374  NM_001321504           SEPT10
14   chr2  110156178      111567374     NM_004336             BUB1
15   chr2  110156178      111567374     NM_005054            RGPD5
17   chr2  110156178      111567374     NM_005434             MALL
18   chr2  110156178      111567374     NM_023016           SOWAHC
19   chr2  110156178      111567374     NR_027063        LINC00116
20   chr2  110156178      111567374     NR_027142        LOC440895
22   chr2  110156178      111567374     NR_027145  LIMS3-LOC440895
24   chr2  110156178      111567374     NR_027244        LINC01106
25   chr2  110156178      111567374     NR_027467            LIMS3
27   chr2  110156178      111567374     NR_036225          MIR4267
28   chr2  110156178      111567374     NR_037626     LOC100507334
29   chr2  110156178      111567374     NR_039941        MIR4436B1
31   chr2  110156178      111567374     NR_046110        LINC01123
33   chr2  110156178      111567374     NR_132975         SNORD132
34   chr2  110156178      111567374     NR_135529     LOC105373553
35  chr22   17215014       17610462  NM_001037814             GAB4
36  chr22   17215014       17610462  NM_001163079            CECR6
37  chr22   17215014       17610462  NM_001289905           IL17RA
39  chr22   17215014       17610462     NM_175878             XKR3
40  chr22   17215014       17610462     NR_003607          HSFY1P1
41  chr22   17215014       17610462     NR_015352            CECR7
42  chr22   17215014       17610462     NR_103793     LOC100996342
43  chr22   17215014       17610462     NR_134584     LOC101929350
44   chr4  169214910      169428820  NM_001012967           DDX60L
45   chr4  169214910      169428820  NM_001166108            PALLD
47   chr4  169214910      169428820     NM_017631            DDX60
48   chr7  143015588      143147594     NM_000083            CLCN1
49   chr7  143015588      143147594  NM_001278297          FAM131B
50   chr7  143015588      143147594  NM_001322263     LOC100507507
51   chr7  143015588      143147594     NM_003461              ZYX
52   chr7  143015588      143147594     NM_005232            EPHA1
54   chr7  143015588      143147594     NM_177437          TAS2R60
55   chr7  143015588      143147594     NR_033897        EPHA1-AS1
56   chr7  143015588      143147594     NR_106952          MIR6892,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   87425839       87594853  NM_001134492        HS2ST1
2   chr1  143555257      143701159     NR_106967       MIR6077
3   chr1  143555257      143701159     NR_111930  LOC100132057
4   chr1  143659641      143771011  NM_001123068       PPIAL4G
5   chr1  143659641      143771011     NR_104014     LINC01138
6   chr1  143659641      143771011     NR_106967       MIR6077
7   chr1  143659641      143771011     NR_111930  LOC100132057
8  chr13   22601439       22810106     NR_103810     LINC00540
9   chr9   30408434       30952136     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12787163       12982723  NM_001009611       PRAMEF4
1    chr1   12787163       12982723  NM_001012276       PRAMEF8
2    chr1   12787163       12982723  NM_001013631      HNRNPCL1
3    chr1   12787163       12982723  NM_001080830      PRAMEF12
4    chr1   12787163       12982723  NM_001103170       AADACL3
5    chr1   12787163       12982723  NM_001146181      HNRNPCL3
6    chr1   12787163       12982723  NM_001146344      PRAMEF11
7    chr1   12787163       12982723  NM_001294139       PRAMEF1
8    chr1   12787163       12982723  NM_001302551      HNRNPCL4
10   chr1   12787163       12982723     NM_023014       PRAMEF2
11   chr1   12787163       12982723     NM_152290      C1orf158
12  chr11  134167084      135484883  NM_001080407        GLB1L3
13  chr11  134167084      135484883     NM_054025        B3GAT1
14  chr11  134167084      135484883     NM_138342        GLB1L2
15  chr11  134167084      135484883     NR_033852     LOC283177
16  chr11  134167084      135484883     NR_135050  LOC100507548
17  chr14   21669795       23272713  NM_001001912         OR4E2
18  chr14   21669795       23272713  NM_001005465        OR10G3
19  chr14   21669795       23272713  NM_001005466        OR10G2
20  chr14   21669795       23272713  NM_001126105        SLC7A7
22  chr14   21669795       23272713  NM_001163380         RAB2B
23  chr14   21669795       23272713  NM_001170629          CHD8
24  chr14   21669795       23272713  NM_001303523          TOX4
25  chr14   21669795       23272713  NM_001317107         OR4E1
26  chr14   21669795       23272713     NM_001344          DAD1
27  chr14   21669795       23272713     NM_005015         OXA1L
28  chr14   21669795       23272713     NM_007192       SUPT16H
29  chr14   21669795       23272713     NM_019852        METTL3
30  chr14   21669795       23272713     NM_020366       RPGRIP1
32  chr14   21669795       23272713     NM_022060         ABHD4
33  chr14   21669795       23272713     NM_031314        HNRNPC
35  chr14   21669795       23272713     NR_002916        SNORD8
36  chr14   21669795       23272713     NR_003029        SNORD9
37  chr14   21669795       23272713     NR_038970     LINC00641
40  chr14   21669795       23272713     NR_111966         SALL2
42  chr17   47840323       48012625  NM_001077503          TAC4
43  chr17   47840323       48012625  NM_001199158          KAT7
44  chr17   47840323       48012625  NM_001242791      FLJ45513
45  chr17   47840323       48012625     NM_030802       FAM117A
46   chr6  162605733      162726678     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   55664897       55788239  NM_001142770        PCDH15
3   chr16   18265561       18747731  NM_001004060         NOMO2
4   chr16   18265561       18747731  NM_001282511        NPIPA8
5   chr16   18265561       18747731     NR_003569       ABCC6P1
6   chr16   18265561       18747731     NR_036140     MIR3179-1
7   chr16   18265561       18747731     NR_036142     MIR3180-2
8   chr16   18265561       18747731     NR_036144     MIR3180-3
9   chr16   18265561       18747731     NR_037442     MIR3670-1
10  chr16   18265561       18747731     NR_103772  LOC100288162
11  chr16   18265561       18747731     NR_106971     MIR6511A4
12  chr16   18265561       18747731     NR_107060     MIR6770-2
13   chr7   80170750       80441746     NM_000072          CD36
21   chr7   80170750       80441746     NM_006379        SEMA3C,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0    chr1  143705394      143809995  NM_001123068            PPIAL4G
1    chr1  143705394      143809995     NR_104014          LINC01138
2    chr1  143705394      143809995     NR_111930       LOC100132057
3   chr15   28603282       28730948     NR_033351            GOLGA8F
4   chr15   28603282       28730948     NR_033353            GOLGA8G
5   chr15   28603282       28730948     NR_039734          MIR4509-3
6   chr16   88473241       88580989  NM_001127464             ZNF469
7   chr16   88473241       88580989     NM_153813              ZFPM1
8   chr16   88473241       88580989     NR_049821            MIR5189
9   chr22   17065756       18659818  NM_001037814               GAB4
10  chr22   17065756       18659818  NM_001122731             MICAL3
11  chr22   17065756       18659818  NM_001127649              PEX26
13  chr22   17065756       18659818  NM_001163079              CECR6
14  chr22   17065756       18659818  NM_001193414              TUBA8
16  chr22   17065756       18659818  NM_001244567                BID
19  chr22   17065756       18659818  NM_001270733            BCL2L13
20  chr22   17065756       18659818  NM_001282227              CECR1
22  chr22   17065756       18659818  NM_001288707       LOC101929372
23  chr22   17065756       18659818  NM_001289905             IL17RA
24  chr22   17065756       18659818  NM_001290046              CECR2
26  chr22   17065756       18659818  NM_001303484           SLC25A18
27  chr22   17065756       18659818     NM_001696           ATP6V1E1
28  chr22   17065756       18659818     NM_014406             CCT8L2
31  chr22   17065756       18659818     NM_017414              USP18
32  chr22   17065756       18659818     NM_017829              CECR5
35  chr22   17065756       18659818     NM_175878               XKR3
37  chr22   17065756       18659818     NR_001591             TPTEP1
38  chr22   17065756       18659818     NR_003607            HSFY1P1
39  chr22   17065756       18659818     NR_015352              CECR7
40  chr22   17065756       18659818     NR_024417           FLJ41941
41  chr22   17065756       18659818     NR_024482          CECR5-AS1
42  chr22   17065756       18659818     NR_030378             MIR648
43  chr22   17065756       18659818     NR_036168          MIR3198-1
44  chr22   17065756       18659818     NR_038398              CECR3
45  chr22   17065756       18659818     NR_040115  ANKRD62P1-PARP4P3
47  chr22   17065756       18659818     NR_103718          LINC00528
48  chr22   17065756       18659818     NR_103793       LOC100996342
49  chr22   17065756       18659818     NR_134584       LOC101929350
50   chr4  121607566      122093975  NM_001128843              TNIP3
52   chr4  121607566      122093975     NM_018699              PRDM5
53   chr4  121607566      122093975     NM_024574               NDNF,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21626158       21756416     NM_020366       RPGRIP1
1   chr14   21626158       21756416     NM_031314        HNRNPC
2   chr14   21626158       21756416     NR_038970     LINC00641
4   chr14   21912496       22101158  NM_001005465        OR10G3
5   chr14   21912496       22101158  NM_001163380         RAB2B
6   chr14   21912496       22101158  NM_001303523          TOX4
7   chr14   21912496       22101158     NM_019852        METTL3
9   chr14   21912496       22101158     NR_111966         SALL2
11  chr15   82877456       83082531  NM_001164465     GOLGA6L10
12  chr15   82877456       83082531  NM_001291420      GOLGA6L9
14  chr15   82877456       83082531     NR_004847      UBE2Q2P2
15  chr15   82877456       83082531     NR_026811     GOLGA2P10
16  chr15   82877456       83082531     NR_045529     ADAMTS7P1
17  chr15   82877456       83082531     NR_102747     LOC727751
18  chr15   82877456       83082531     NR_111962    GOLGA6L17P
19  chr15   82877456       83082531     NR_120378  LOC102724034
20   chr4   69247131       69750184     NM_001075       UGT2B10
21   chr4   69247131       69750184     NM_001076       UGT2B15
22   chr4   69247131       69750184     NM_001077       UGT2B17
23   chr4   69247131       69750184     NM_014058     TMPRSS11E
24   chr7  110685667      110823066  NM_001099658         LRRN3
25   chr7  110685667      110823066  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48282291       48450628  NM_001004702         OR4C3
1   chr11   48282291       48450628  NM_001004725         OR4S1
2   chr11   48282291       48450628  NM_001004726         OR4X1
3   chr11   48282291       48450628  NM_001005513        OR4C45
4   chr14   21750608       21887117  NM_001170629          CHD8
5   chr14   21750608       21887117     NM_007192       SUPT16H
6   chr14   21750608       21887117     NM_020366       RPGRIP1
8   chr14   21750608       21887117     NR_002916        SNORD8
9   chr14   21750608       21887117     NR_003029        SNORD9
10  chr15   82855807       83021707  NM_001164465     GOLGA6L10
11  chr15   82855807       83021707  NM_001291420      GOLGA6L9
13  chr15   82855807       83021707     NR_026811     GOLGA2P10
14  chr15   82855807       83021707     NR_045529     ADAMTS7P1
15  chr15   82855807       83021707     NR_102747     LOC727751
16  chr15   82855807       83021707     NR_111962    GOLGA6L17P
17  chr15   82855807       83021707     NR_120378  LOC102724034,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  131960885      132062561  NM_001048209           NTM
3   chr14   21857642       21976386  NM_001163380         RAB2B
4   chr14   21857642       21976386  NM_001170629          CHD8
5   chr14   21857642       21976386  NM_001303523          TOX4
6   chr14   21857642       21976386     NM_019852        METTL3
9   chr14   21857642       21976386     NR_002916        SNORD8
10  chr14   21857642       21976386     NR_003029        SNORD9
11  chr14   47811303       47930965  NM_001113498         MDGA2
14   chr9   44324101       44428774     NR_121564  LOC101927827
15   chr9   44324101       44428774     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  215814382      215917931     NM_206933         USH2A
1   chr16   18332888       18483193  NM_001282511        NPIPA8
2   chr16   18332888       18483193     NR_103772  LOC100288162
3   chr16   18332888       18483193     NR_106971     MIR6511A4
4   chr16   18332888       18483193     NR_107060     MIR6770-2
5    chr3  159992163      161549849  NM_001040100        SPTSSB
6    chr3  159992163      161549849  NM_001080440         OTOL1
7    chr3  159992163      161549849  NM_001190241         IFT80
9    chr3  159992163      161549849  NM_001288753          SMC4
10   chr3  159992163      161549849  NM_001317912         PPM1L
11   chr3  159992163      161549849  NM_001320227          NMD3
13   chr3  159992163      161549849     NM_002268         KPNA4
14   chr3  159992163      161549849     NM_003781      B3GALNT1
17   chr3  159992163      161549849     NM_025047         ARL14
20   chr3  159992163      161549849     NM_173084        TRIM59
21   chr3  159992163      161549849     NR_003001       SCARNA7
22   chr3  159992163      161549849     NR_029525       MIR16-2
23   chr3  159992163      161549849     NR_029663        MIR15B
24   chr3  159992163      161549849     NR_102265  LOC101243545
26   chr5  104396699      104507840     NR_000039       RAB9BP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67336648       67815847     NM_000695       ALDH3B2
1   chr11   67336648       67815847     NM_000852         GSTP1
3   chr11   67336648       67815847  NM_001161473       ALDH3B1
4   chr11   67336648       67815847  NM_001166102        NDUFV1
5   chr11   67336648       67815847  NM_001243750         NUDT8
7   chr11   67336648       67815847     NM_002496        NDUFS8
8   chr11   67336648       67815847     NM_005995         TBX10
9   chr11   67336648       67815847     NM_006019        TCIRG1
11  chr11   67336648       67815847     NM_030930       UNC93B1
12  chr11   67336648       67815847     NM_080658          ACY3
14  chr11   67336648       67815847     NR_024249      FAM86C2P
15  chr11   67336648       67815847     NR_033791        DOC2GP
16  chr11   67336648       67815847     NR_039840       MIR4691
17  chr11   67336648       67815847     NR_106811       MIR6753
18  chr11   67336648       67815847     NR_106963       MIR7113
19  chr11   67336648       67815847     NR_130935      C11orf72
20  chr14   21826410       22093351  NM_001005465        OR10G3
21  chr14   21826410       22093351  NM_001163380         RAB2B
22  chr14   21826410       22093351  NM_001170629          CHD8
23  chr14   21826410       22093351  NM_001303523          TOX4
24  chr14   21826410       22093351     NM_007192       SUPT16H
25  chr14   21826410       22093351     NM_019852        METTL3
28  chr14   21826410       22093351     NR_002916        SNORD8
29  chr14   21826410       22093351     NR_003029        SNORD9
30  chr14   21826410       22093351     NR_111966         SALL2
32   chr8    7894854        8025824     NR_031689      MIR548I3
33   chr9   39085348       39300674     NM_033655       CNTNAP3
34   chr9   41858094       42168871     NR_003670        FGF7P3
35   chr9   41858094       42168871     NR_015363         GLIDR
38   chr9   41858094       42168871     NR_126048  LOC102724238
39   chr9   41858094       42168871     NR_126049     LOC554249
40   chr9  137535083      137667911     NM_000093        COL5A1
41   chr9  137535083      137667911     NR_138049    COL5A1-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   28717291       28867578     NR_033351    GOLGA8F
1   chr15   28717291       28867578     NR_033353    GOLGA8G
2   chr15   28717291       28867578     NR_039734  MIR4509-3
3   chr22   19010490       19166839  NM_001184781      DGCR2
4   chr22   19010490       19166839  NM_001256534    SLC25A1
5   chr22   19010490       19166839     NM_005315       GSC2
7   chr22   19010490       19166839     NM_022719     DGCR14
8   chr22   19010490       19166839     NM_053006      TSSK2
9   chr22   19010490       19166839     NR_024157     DGCR11
10  chr22   19010490       19166839     NR_026651     DGCR10
11  chr22   19010490       19166839     NR_103767  LINC01311
12  chr22   19010490       19166839     NR_110533      DGCR5
13   chr4    9031389        9266883  NM_001256852   USP17L10
14   chr4    9031389        9266883  NM_001256853   USP17L12
16   chr4    9031389        9266883  NM_001256854   USP17L11
19   chr4    9031389        9266883  NM_001256855   USP17L13
20   chr4    9031389        9266883  NM_001256857   USP17L17
21   chr4    9031389        9266883  NM_001256860   USP17L19
22   chr4    9031389        9266883  NM_001256894   USP17L15
23   chr4   81895539       82000155     NM_001201       BMP3,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr11   67311153       68279601     NM_000695       ALDH3B2
1    chr11   67311153       68279601     NM_000852         GSTP1
3    chr11   67311153       68279601  NM_001161473       ALDH3B1
4    chr11   67311153       68279601  NM_001164164        PPP6R3
5    chr11   67311153       68279601  NM_001166102        NDUFV1
6    chr11   67311153       68279601  NM_001243750         NUDT8
8    chr11   67311153       68279601  NM_001300907         KMT5B
11   chr11   67311153       68279601     NM_002335          LRP5
12   chr11   67311153       68279601     NM_002496        NDUFS8
13   chr11   67311153       68279601     NM_005995         TBX10
14   chr11   67311153       68279601     NM_006019        TCIRG1
17   chr11   67311153       68279601     NM_022338      C11orf24
18   chr11   67311153       68279601     NM_030930       UNC93B1
19   chr11   67311153       68279601     NM_080658          ACY3
21   chr11   67311153       68279601     NM_212469          CHKA
22   chr11   67311153       68279601     NR_024249      FAM86C2P
23   chr11   67311153       68279601     NR_033791        DOC2GP
24   chr11   67311153       68279601     NR_039840       MIR4691
25   chr11   67311153       68279601     NR_106811       MIR6753
26   chr11   67311153       68279601     NR_106963       MIR7113
27   chr11   67311153       68279601     NR_130935      C11orf72
28   chr14   21773091       21961702  NM_001163380         RAB2B
29   chr14   21773091       21961702  NM_001170629          CHD8
30   chr14   21773091       21961702  NM_001303523          TOX4
31   chr14   21773091       21961702     NM_007192       SUPT16H
32   chr14   21773091       21961702     NM_020366       RPGRIP1
35   chr14   21773091       21961702     NR_002916        SNORD8
36   chr14   21773091       21961702     NR_003029        SNORD9
37   chr15   20660855       20765170  NM_001145004      GOLGA6L6
38   chr15   20660855       20765170     NR_036432       HERC2P3
..     ...        ...            ...           ...           ...
98   chr19   57533608       58993059     NM_133502        ZNF274
99   chr19   57533608       58993059     NM_138466        ZNF837
100  chr19   57533608       58993059     NM_152474      C19orf18
102  chr19   57533608       58993059     NM_152677        ZSCAN4
103  chr19   57533608       58993059     NM_173631        ZNF547
104  chr19   57533608       58993059     NM_173632        ZNF776
105  chr19   57533608       58993059     NM_182572        ZSCAN1
106  chr19   57533608       58993059     NM_207395       ZNF324B
107  chr19   57533608       58993059     NM_213598        ZNF543
108  chr19   57533608       58993059     NR_002166      TRAPPC2B
109  chr19   57533608       58993059     NR_015380      A1BG-AS1
110  chr19   57533608       58993059     NR_024162      FKBP1AP1
112  chr19   57533608       58993059     NR_036508  LOC100128398
113  chr19   57533608       58993059     NR_039910       MIR4754
114  chr19   57533608       58993059     NR_106864       MIR6806
115  chr19   57533608       58993059     NR_110975        ZNF154
118  chr19   57533608       58993059     NR_136527  LOC105372483
119  chr19   57533608       58993059     NR_136529  LOC105372476
120  chr19   57533608       58993059     NR_144444  LOC105372480
121  chr19   57533608       58993059     NR_144445       ERVK3-1
122  chr19   57533608       58993059     NR_144447  ZNF8-ERVK3-1
123  chr22   18992667       19094480  NM_001184781         DGCR2
124  chr22   18992667       19094480     NR_024157        DGCR11
125  chr22   18992667       19094480     NR_024159         DGCR9
126  chr22   18992667       19094480     NR_026651        DGCR10
127  chr22   18992667       19094480     NR_110533         DGCR5
128   chr5    6078494        6315238     NR_028351      FLJ33360
129   chr7  157326659      157507217  NM_001308267        PTPRN2
131   chr7  157326659      157507217     NR_029689      MIR153-2
132   chr9   39105462       39244814     NM_033655       CNTNAP3

[107 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   10527919       10649599  NM_001256160       ATF7IP2
1  chr16   10527919       10649599     NM_001424          EMP2
3  chr16   18210369       18490244  NM_001282511        NPIPA8
4  chr16   18210369       18490244     NR_103772  LOC100288162
5  chr16   18210369       18490244     NR_106971     MIR6511A4
6  chr16   18210369       18490244     NR_107060     MIR6770-2
7   chr7  110592315      110816224  NM_001099658         LRRN3
8   chr7  110592315      110816224  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21763661       22549929  NM_001001912     OR4E2
1   chr14   21763661       22549929  NM_001005465    OR10G3
2   chr14   21763661       22549929  NM_001005466    OR10G2
3   chr14   21763661       22549929  NM_001163380     RAB2B
4   chr14   21763661       22549929  NM_001170629      CHD8
5   chr14   21763661       22549929  NM_001303523      TOX4
6   chr14   21763661       22549929  NM_001317107     OR4E1
7   chr14   21763661       22549929     NM_007192   SUPT16H
8   chr14   21763661       22549929     NM_019852    METTL3
9   chr14   21763661       22549929     NM_020366   RPGRIP1
12  chr14   21763661       22549929     NR_002916    SNORD8
13  chr14   21763661       22549929     NR_003029    SNORD9
14  chr14   21763661       22549929     NR_111966     SALL2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18158867       18444134  NM_001282511        NPIPA8
1  chr16   18158867       18444134     NR_103772  LOC100288162
2  chr16   18158867       18444134     NR_106971     MIR6511A4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   54006823       54975271     NR_031628       MIR1297
1   chr13   54006823       54975271     NR_047488     LINC00558
2   chr13   54006823       54975271     NR_108062     LINC00458
4   chr15   28619002       29457095  NM_001130414         APBA2
5   chr15   28619002       29457095  NM_001282468       GOLGA8M
6   chr15   28619002       29457095     NM_015307      FAM189A1
7   chr15   28619002       29457095     NR_026589       WHAMMP2
8   chr15   28619002       29457095     NR_033351       GOLGA8F
10  chr15   28619002       29457095     NR_033353       GOLGA8G
12  chr15   28619002       29457095     NR_036443       HERC2P9
13  chr15   28619002       29457095     NR_036475  LOC100289656
14  chr15   28619002       29457095     NR_037599     PDCD6IPP2
15  chr15   28619002       29457095     NR_039734     MIR4509-3
17  chr15   28619002       29457095     NR_047567     GOLGA6L7P
18   chr5   17749345       17998956     NR_134286     LOC646241
20   chr9   41875000       42036654     NR_003670        FGF7P3
21   chr9   41875000       42036654     NR_015363         GLIDR
24   chr9   41875000       42036654     NR_126048  LOC102724238
25   chr9   41875000       42036654     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   29728594       30122540  NM_001301025          TJP1
3  chr15   29728594       30122540     NM_015307      FAM189A1
4  chr15   29728594       30122540     NR_135221  LOC100130111
5  chr15   30254667       30384988  NM_001282472       GOLGA8J
6  chr15   30254667       30384988  NM_001301025          TJP1
7  chr16   18332456       18452401  NM_001282511        NPIPA8
8  chr16   18332456       18452401     NR_103772  LOC100288162
9  chr16   18332456       18452401     NR_106971     MIR6511A4,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   21833402       22029457  NM_001163380       RAB2B
1   chr14   21833402       22029457  NM_001170629        CHD8
2   chr14   21833402       22029457  NM_001303523        TOX4
3   chr14   21833402       22029457     NM_007192     SUPT16H
4   chr14   21833402       22029457     NM_019852      METTL3
7   chr14   21833402       22029457     NR_002916      SNORD8
8   chr14   21833402       22029457     NR_003029      SNORD9
9   chr14   21833402       22029457     NR_111966       SALL2
11   chr2  133560280      133662928     NM_207363      NCKAP5
12   chr3  156077626      156261940  NM_001308197        SSR3
15   chr3  156077626      156261940  NM_001308217      KCNAB1
20   chr3  156077626      156261940     NR_046618  KCNAB1-AS1
21   chr8      29136        1421484  NM_001005504      OR4F21
22   chr8      29136        1421484  NM_001042415      ZNF596
24   chr8      29136        1421484  NM_001256113        TDRP
28   chr8      29136        1421484  NM_001303100      ERICH1
29   chr8      29136        1421484  NM_001346810      DLGAP2
30   chr8      29136        1421484     NM_012173      FBXO25
33   chr8      29136        1421484     NR_003572   RPL23AP53
34   chr8      29136        1421484     NR_073397  ERICH1-AS1
35   chr8      29136        1421484     NR_103537      FAM87A
36   chr8      29136        1421484     NR_111948   LOC286083
37   chr8      29136        1421484     NR_134292   LOC401442,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143686068      143980073  NM_001123068       PPIAL4G
1    chr1  143686068      143980073  NM_001287385        FAM72C
2    chr1  143686068      143980073  NM_001345942        FAM72D
6    chr1  143686068      143980073     NR_104014     LINC01138
7    chr1  143686068      143980073     NR_111930  LOC100132057
9   chr14   47788016       49382078  NM_001113498         MDGA2
11  chr14   47788016       49382078     NR_037503       MIR548Y
12  chr14   47788016       49382078     NR_039996     LINC00648,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72582165       72885850     NM_013381         TRHDE
1   chr12   72582165       72885850     NR_026836     TRHDE-AS1
3   chr13   71673067       71979194     NR_047699     LINC00348
4   chr14   21800448       22048626  NM_001005465        OR10G3
5   chr14   21800448       22048626  NM_001163380         RAB2B
6   chr14   21800448       22048626  NM_001170629          CHD8
7   chr14   21800448       22048626  NM_001303523          TOX4
8   chr14   21800448       22048626     NM_007192       SUPT16H
9   chr14   21800448       22048626     NM_019852        METTL3
10  chr14   21800448       22048626     NM_020366       RPGRIP1
13  chr14   21800448       22048626     NR_002916        SNORD8
14  chr14   21800448       22048626     NR_003029        SNORD9
15  chr14   21800448       22048626     NR_111966         SALL2
17  chr15   20699930       20804614  NM_001145004      GOLGA6L6
18  chr15   20699930       20804614     NR_027411      GOLGA8CP
19  chr15   20699930       20804614     NR_036432       HERC2P3
20  chr15   87251550       88925977  NM_001007156         NTRK3
24  chr15   87251550       88925977     NM_152336         AGBL1
25  chr15   87251550       88925977     NR_026869     LINC00052
26  chr15   87251550       88925977     NR_038229     NTRK3-AS1
27  chr15   87251550       88925977     NR_135682  LOC105370954
28  chr15   87251550       88925977     NR_135683  LOC102724452
29  chr16   21490761       21783999  NM_001077180        METTL9
30  chr16   21490761       21783999  NM_001161683          OTOA
32  chr16   21490761       21783999     NM_005849         IGSF6
35  chr16   21490761       21783999     NR_002594      SLC7A5P2
36  chr16   21490761       21783999     NR_027155        SMG1P3
37  chr16   21490761       21783999     NR_049833     MIR3680-2
38  chr16   21490761       21783999     NR_110930  LOC101927814
39  chr20   14785055       14916502     NM_080676       MACROD2
40  chr20   14785055       14916502     NR_037841   MACROD2-AS1
42   chr5   93382765       93484992  NM_001163418       FAM172A
43   chr5  146428726      146667788  NM_001112724        STK32A
44   chr5  146428726      146667788  NM_001271899       PPP2R2B
49   chr5  167284268      167438964  NM_001080428         TENM2
51   chr7   14885799       16509755  NM_001004320          AGMO
52   chr7   14885799       16509755  NM_001101417          ISPD
53   chr7   14885799       16509755     NM_005924         MEOX2
54   chr7   14885799       16509755     NM_015464       SOSTDC1
55   chr7   14885799       16509755     NR_038947      ISPD-AS1
56   chr7   14885799       16509755     NR_110094     MEOX2-AS1
57   chr7   14885799       16509755     NR_134258  LOC105375166
58   chr7  110786557      110912653  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  102369568      102687999     NR_110211     OLFM3
1   chr12   71483136       71812438     NM_004616    TSPAN8
2   chr14   21769099       22113150  NM_001005465    OR10G3
3   chr14   21769099       22113150  NM_001005466    OR10G2
4   chr14   21769099       22113150  NM_001163380     RAB2B
5   chr14   21769099       22113150  NM_001170629      CHD8
6   chr14   21769099       22113150  NM_001303523      TOX4
7   chr14   21769099       22113150     NM_007192   SUPT16H
8   chr14   21769099       22113150     NM_019852    METTL3
9   chr14   21769099       22113150     NM_020366   RPGRIP1
12  chr14   21769099       22113150     NR_002916    SNORD8
13  chr14   21769099       22113150     NR_003029    SNORD9
14  chr14   21769099       22113150     NR_111966     SALL2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21940677       22124338  NM_001005465    OR10G3
1  chr14   21940677       22124338  NM_001005466    OR10G2
2  chr14   21940677       22124338  NM_001163380     RAB2B
3  chr14   21940677       22124338  NM_001303523      TOX4
4  chr14   21940677       22124338     NM_019852    METTL3
6  chr14   21940677       22124338     NR_111966     SALL2
8   chr6   22027408       22165141     NR_015410    CASC15
9   chr6   22027408       22165141     NR_034143     NBAT1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  187256621      188167497     NR_126347    LINC01036
1    chr1  187256621      188167497     NR_132374    LINC01037
2   chr13   46138604       46253815     NM_182542      ERICH6B
3   chr13   63091837       63380546     NR_047029    LINC00448
6   chr14   21759496       21873076  NM_001170629         CHD8
7   chr14   21759496       21873076     NM_007192      SUPT16H
8   chr14   21759496       21873076     NM_020366      RPGRIP1
10  chr14   21759496       21873076     NR_002916       SNORD8
11  chr14   21759496       21873076     NR_003029       SNORD9
12  chr14   21916177       22129829  NM_001005465       OR10G3
13  chr14   21916177       22129829  NM_001005466       OR10G2
14  chr14   21916177       22129829  NM_001163380        RAB2B
15  chr14   21916177       22129829  NM_001303523         TOX4
16  chr14   21916177       22129829     NM_019852       METTL3
18  chr14   21916177       22129829     NR_111966        SALL2
20  chr20   14900171       15413515  NM_001033087      MACROD2
22  chr20   14900171       15413515     NR_037841  MACROD2-AS1
24   chr7   64102884       64463699  NM_001007253       ERV3-1
25   chr7   64102884       64463699  NM_001160183       ZNF138
26   chr7   64102884       64463699  NM_001282360       ZNF107
27   chr7   64102884       64463699     NM_015852       ZNF117
28   chr7   64102884       64463699     NM_021148       ZNF273
31   chr7   64102884       64463699     NR_106898      MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244983430      245375736  NM_001143943        EFCAB2
2    chr1  244983430      245375736  NM_001312871         COX20
4    chr1  244983430      245375736     NM_004501        HNRNPU
5    chr1  244983430      245375736     NM_018012        KIF26B
8    chr1  244983430      245375736     NR_111907  LOC101928068
9    chr1  244983430      245375736     NR_132782      SNORA100
10  chr14   21815481       21954859  NM_001163380         RAB2B
11  chr14   21815481       21954859  NM_001170629          CHD8
12  chr14   21815481       21954859  NM_001303523          TOX4
13  chr14   21815481       21954859     NM_007192       SUPT16H
14  chr14   21815481       21954859     NM_020366       RPGRIP1
17  chr14   21815481       21954859     NR_002916        SNORD8
18  chr14   21815481       21954859     NR_003029        SNORD9
19   chr3    1474673        2343530  NM_001206955         CNTN4
21   chr3    1474673        2343530     NR_046555     CNTN4-AS2
22   chr3   41300625       41420287  NM_001322500          ULK4
24   chr7   88964739       89088624     NM_181646       ZNF804B
25   chr9   41889634       42465313  NM_001012419     ANKRD20A3
26   chr9   41889634       42465313  NM_001012421     ANKRD20A2
27   chr9   41889634       42465313     NR_003670        FGF7P3
28   chr9   41889634       42465313     NR_015363         GLIDR
31   chr9   41889634       42465313     NR_126048  LOC102724238
32   chr9   41889634       42465313     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20696891       20878390  NM_001145004      GOLGA6L6
1   chr15   20696891       20878390     NR_027411      GOLGA8CP
2   chr15   20696891       20878390     NR_027992        NBEAP1
3   chr15   20696891       20878390     NR_036432       HERC2P3
4   chr15   28816234       29168349  NM_001282468       GOLGA8M
5   chr15   28816234       29168349     NR_026589       WHAMMP2
6   chr15   28816234       29168349     NR_036443       HERC2P9
7   chr15   28816234       29168349     NR_036475  LOC100289656
8   chr15   28816234       29168349     NR_037599     PDCD6IPP2
9   chr15   28816234       29168349     NR_047567     GOLGA6L7P
10  chr16    6709471        6855066  NM_001142334        RBFOX1
13   chr3   26031886       26673928  NM_001317808        LRRC3B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145299749      145448739  NM_001277444         NBPF9
1    chr1  145299749      145448739  NM_001278267        NBPF20
2    chr1  145299749      145448739  NM_001302371        NBPF10
3    chr1  145299749      145448739  NM_001313972         TXNIP
5    chr1  145299749      145448739     NM_145277          HFE2
6    chr1  145299749      145448739     NR_104217       NBPF25P
7    chr1  145299749      145448739     NR_125967  LOC101928979
8   chr15   28778250       29237204  NM_001130414         APBA2
9   chr15   28778250       29237204  NM_001282468       GOLGA8M
10  chr15   28778250       29237204     NR_026589       WHAMMP2
11  chr15   28778250       29237204     NR_036443       HERC2P9
12  chr15   28778250       29237204     NR_036475  LOC100289656
13  chr15   28778250       29237204     NR_037599     PDCD6IPP2
14  chr15   28778250       29237204     NR_047567     GOLGA6L7P
15  chr15   51489861       51593459     NM_031226       CYP19A1
16  chr15   51489861       51593459     NR_039863       MIR4713
17  chr15   59937930       60038659  NM_001320674         BNIP2
19  chr15   59937930       60038659  NM_001320929        GTF2A2
22   chr5   59837847       59952856  NM_001145208       DEPDC1B
23   chr5   59837847       59952856     NR_024617         PART1
24   chr7  152341150      152689992     NM_005431         XRCC2
25   chr7  152341150      152689992     NM_020445        ACTR3B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4768647        5007867  NM_001004748        OR51A2
1   chr11    4768647        5007867  NM_001004749        OR51A7
2   chr11    4768647        5007867  NM_001004752        OR51F1
3   chr11    4768647        5007867  NM_001004753        OR51F2
4   chr11    4768647        5007867  NM_001004758        OR51S1
5   chr11    4768647        5007867  NM_001004759        OR51T1
6   chr11    4768647        5007867  NM_001005177        OR52R1
7   chr11    4768647        5007867  NM_001005237        OR51G1
8   chr11    4768647        5007867  NM_001005238        OR51G2
9   chr11    4768647        5007867  NM_001005329        OR51A4
10  chr14   21883812       21992715  NM_001163380         RAB2B
11  chr14   21883812       21992715  NM_001170629          CHD8
12  chr14   21883812       21992715  NM_001303523          TOX4
13  chr14   21883812       21992715     NM_019852        METTL3
16  chr14   21883812       21992715     NR_111966         SALL2
18   chr4   91157620       91258664  NM_001145065        CCSER1
20   chr5  106100853      106214433     NR_104671  LOC102467213
21   chr6  161746772      162188202     NM_013988         PARK2
22   chr6  161746772      162188202     NR_134594  LOC105378098
23   chr6  162270345      162436119     NM_013988         PARK2
24   chr8    7043336        7169381     NR_027000     LINC00965
27   chr8    7043336        7169381     NR_027423        FAM66B
28   chr9   66955345       67309922     NR_002817        AQP7P1
29   chr9   66955345       67309922     NR_046175     LOC286297
30   chr9   66955345       67309922     NR_135597  LOC101928195
31   chr9   66955345       67309922     NR_136299  LOC101929583
32   chr9   66955345       67309922     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  244987888      245110674  NM_001312871      COX20
2    chr1  244987888      245110674     NM_004501     HNRNPU
4    chr1  244987888      245110674     NR_132782   SNORA100
5   chr11    6750217        6907072  NM_001004460     OR10A2
6   chr11    6750217        6907072  NM_001004489     OR2AG1
7   chr11    6750217        6907072  NM_001004490     OR2AG2
8   chr11    6750217        6907072     NM_003696      OR6A2
9   chr11    6750217        6907072     NM_178168     OR10A5
10  chr11    6750217        6907072     NM_207186     OR10A4
11  chr14   21910019       22894406  NM_001001912      OR4E2
12  chr14   21910019       22894406  NM_001005465     OR10G3
13  chr14   21910019       22894406  NM_001005466     OR10G2
14  chr14   21910019       22894406  NM_001163380      RAB2B
15  chr14   21910019       22894406  NM_001303523       TOX4
16  chr14   21910019       22894406  NM_001317107      OR4E1
17  chr14   21910019       22894406     NM_019852     METTL3
19  chr14   21910019       22894406     NR_111966      SALL2
21  chr16   16447231       16791681  NM_001282511     NPIPA8
22  chr16   16447231       16791681     NR_106971  MIR6511A4
23   chr4    9029646        9215861  NM_001256852   USP17L10,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   26044044       26480541     NM_017433         MYO3A
1   chr10   26044044       26480541     NR_120650  LOC101929073
2   chr15   28271100       29563753     NM_000275          OCA2
3   chr15   28271100       29563753  NM_001130414         APBA2
4   chr15   28271100       29563753  NM_001282468       GOLGA8M
6   chr15   28271100       29563753     NM_004667         HERC2
7   chr15   28271100       29563753     NM_015307      FAM189A1
8   chr15   28271100       29563753     NM_138704        NSMCE3
9   chr15   28271100       29563753     NR_026589       WHAMMP2
10  chr15   28271100       29563753     NR_033351       GOLGA8F
12  chr15   28271100       29563753     NR_033353       GOLGA8G
14  chr15   28271100       29563753     NR_036443       HERC2P9
15  chr15   28271100       29563753     NR_036475  LOC100289656
16  chr15   28271100       29563753     NR_037599     PDCD6IPP2
17  chr15   28271100       29563753     NR_039734     MIR4509-3
19  chr15   28271100       29563753     NR_047567     GOLGA6L7P
20  chr16   82968812       83533334  NM_001220488         CDH13
22  chr16   82968812       83533334     NR_110937  LOC101928417,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   47844028       47992089  NM_001113498         MDGA2
1   chr15   28732326       28861001     NR_033351       GOLGA8F
2   chr15   28732326       28861001     NR_033353       GOLGA8G
3   chr15   28732326       28861001     NR_039734     MIR4509-3
4   chr22   19048636       19156010  NM_001184781         DGCR2
5   chr22   19048636       19156010     NM_005315          GSC2
6   chr22   19048636       19156010     NM_022719        DGCR14
7   chr22   19048636       19156010     NM_053006         TSSK2
8    chr5  124951467      126249989  NM_001146319        GRAMD3
11   chr5  124951467      126249989  NM_001198557         LMNB1
12   chr5  124951467      126249989  NM_001201377       ALDH7A1
14   chr5  124951467      126249989     NM_032177          PHAX
15   chr5  124951467      126249989     NM_178450        MARCH3
16   chr5  124951467      126249989     NM_207408         TEX43
17   chr5  124951467      126249989     NR_105039  LOC101927488
18   chr5  124951467      126249989     NR_105042  LOC102546228
19   chr5  124951467      126249989     NR_134485  LOC102723557
20   chr7   64113525       64245526  NM_001282360        ZNF107
22   chr7   64113525       64245526     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   59117783       59526648  NM_001085487         MYSM1
1    chr1   59117783       59526648     NM_002228           JUN
2    chr1   59117783       59526648     NR_034014     LINC01135
3    chr1   59117783       59526648     NR_110626     LINC01358
4   chr15   28168716       30712991     NM_000275          OCA2
5   chr15   28168716       30712991  NM_001130414         APBA2
6   chr15   28168716       30712991  NM_001282468       GOLGA8M
7   chr15   28168716       30712991  NM_001282472       GOLGA8J
8   chr15   28168716       30712991  NM_001282484       GOLGA8R
10  chr15   28168716       30712991  NM_001301025          TJP1
13  chr15   28168716       30712991     NM_004667         HERC2
14  chr15   28168716       30712991     NM_015307      FAM189A1
15  chr15   28168716       30712991     NM_138704        NSMCE3
16  chr15   28168716       30712991     NM_139320      CHRFAM7A
17  chr15   28168716       30712991     NR_026589       WHAMMP2
18  chr15   28168716       30712991     NR_026771  DKFZP434L187
19  chr15   28168716       30712991     NR_026859        ULK4P3
20  chr15   28168716       30712991     NR_033351       GOLGA8F
22  chr15   28168716       30712991     NR_033353       GOLGA8G
24  chr15   28168716       30712991     NR_033933       GOLGA8T
25  chr15   28168716       30712991     NR_036443       HERC2P9
26  chr15   28168716       30712991     NR_036475  LOC100289656
27  chr15   28168716       30712991     NR_037599     PDCD6IPP2
28  chr15   28168716       30712991     NR_039734     MIR4509-3
30  chr15   28168716       30712991     NR_047567     GOLGA6L7P
31  chr15   28168716       30712991     NR_135221  LOC100130111
32  chr16   68631049       68869614  NM_001317184          CDH1
33  chr16   68631049       68869614  NM_001317195          CDH3
34  chr16   68631049       68869614     NR_106988     MIR7641-2
35  chr19    1930563        2175459  NM_001031735        IZUMO4
36  chr19    1930563        2175459     NM_001319       CSNK1G2
37  chr19    1930563        2175459     NM_003938         AP3D1
38  chr19    1930563        2175459     NM_017572         MKNK2
39  chr19    1930563        2175459     NM_017797         BTBD2
40  chr19    1930563        2175459     NM_032482         DOT1L
41  chr19    1930563        2175459     NM_130807         MOB3A
42  chr19    1930563        2175459     NR_033400   CSNK1G2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   62997673       63527137     NR_047029     LINC00448
3   chr15   28728181       29350638  NM_001130414         APBA2
4   chr15   28728181       29350638  NM_001282468       GOLGA8M
5   chr15   28728181       29350638     NR_026589       WHAMMP2
6   chr15   28728181       29350638     NR_033351       GOLGA8F
7   chr15   28728181       29350638     NR_033353       GOLGA8G
8   chr15   28728181       29350638     NR_036443       HERC2P9
9   chr15   28728181       29350638     NR_036475  LOC100289656
10  chr15   28728181       29350638     NR_037599     PDCD6IPP2
11  chr15   28728181       29350638     NR_039734     MIR4509-3
12  chr15   28728181       29350638     NR_047567     GOLGA6L7P
13  chr16   21515623       21765234  NM_001077180        METTL9
14  chr16   21515623       21765234  NM_001161683          OTOA
16  chr16   21515623       21765234     NM_005849         IGSF6
19  chr16   21515623       21765234     NR_002594      SLC7A5P2
20  chr16   21515623       21765234     NR_049833     MIR3680-2
21  chr16   21515623       21765234     NR_110930  LOC101927814
22   chr3  131293315      131682070  NM_001289112         CPNE4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  102744923      102862963     NM_002426      MMP12
1   chr11  102744923      102862963     NM_002427      MMP13
2   chr13   80796963       80975849  NM_001318536      SPRY2
5   chr14   21720760       22041774  NM_001005465     OR10G3
6   chr14   21720760       22041774  NM_001163380      RAB2B
7   chr14   21720760       22041774  NM_001170629       CHD8
8   chr14   21720760       22041774  NM_001303523       TOX4
9   chr14   21720760       22041774     NM_007192    SUPT16H
10  chr14   21720760       22041774     NM_019852     METTL3
11  chr14   21720760       22041774     NM_020366    RPGRIP1
13  chr14   21720760       22041774     NM_031314     HNRNPC
15  chr14   21720760       22041774     NR_002916     SNORD8
16  chr14   21720760       22041774     NR_003029     SNORD9
17  chr14   21720760       22041774     NR_111966      SALL2
19  chr15   28603683       28734609     NR_033351    GOLGA8F
20  chr15   28603683       28734609     NR_033353    GOLGA8G
21  chr15   28603683       28734609     NR_039734  MIR4509-3
22  chr19   21672904       21790995  NM_001001415     ZNF429
23  chr19   21672904       21790995     NR_037194  LINC00664
24   chr7  146047185      146450001     NM_014141    CNTNAP2
25   chr9   88414301       88674593  NM_001321881      NAA35
27   chr9   88414301       88674593     NM_016548      GOLM1
30   chr9   88414301       88674593     NR_029410  LOC389765,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4347157        4520078  NM_001005161        OR52B4
1   chr11    4347157        4520078  NM_001005171        OR52K1
2   chr11    4347157        4520078  NM_001005172        OR52K2
3   chr11    4347157        4520078     NM_003141        TRIM21
4   chr14   21780601       22027134  NM_001163380         RAB2B
5   chr14   21780601       22027134  NM_001170629          CHD8
6   chr14   21780601       22027134  NM_001303523          TOX4
7   chr14   21780601       22027134     NM_007192       SUPT16H
8   chr14   21780601       22027134     NM_019852        METTL3
9   chr14   21780601       22027134     NM_020366       RPGRIP1
12  chr14   21780601       22027134     NR_002916        SNORD8
13  chr14   21780601       22027134     NR_003029        SNORD9
14  chr14   21780601       22027134     NR_111966         SALL2
16   chr2   34191824       34420557     NR_126403     LINC01317
17   chr2   34191824       34420557     NR_132381     LINC01318
18   chr2   78747102       78923439     NR_136312  LOC105374820
19   chr7   12182408       12349517  NM_001134232      TMEM106B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21895377       22142268  NM_001001912         OR4E2
1   chr14   21895377       22142268  NM_001005465        OR10G3
2   chr14   21895377       22142268  NM_001005466        OR10G2
3   chr14   21895377       22142268  NM_001163380         RAB2B
4   chr14   21895377       22142268  NM_001170629          CHD8
5   chr14   21895377       22142268  NM_001303523          TOX4
6   chr14   21895377       22142268  NM_001317107         OR4E1
7   chr14   21895377       22142268     NM_019852        METTL3
10  chr14   21895377       22142268     NR_111966         SALL2
12  chr22   19880839       20260776     NM_000754          COMT
15  chr22   19880839       20260776  NM_001190326         DGCR8
16  chr22   19880839       20260776  NM_001243537       CCDC188
17  chr22   19880839       20260776  NM_001278639        RANBP1
20  chr22   19880839       20260776  NM_001282512        TXNRD2
21  chr22   19880839       20260776  NM_001283116        TANGO2
24  chr22   19880839       20260776     NM_001670         ARVCF
27  chr22   19880839       20260776     NM_013373        ZDHHC8
28  chr22   19880839       20260776     NM_022727        TRMT2A
29  chr22   19880839       20260776     NM_023004         RTN4R
30  chr22   19880839       20260776     NR_026919     LINC00896
31  chr22   19880839       20260776     NR_029706        MIR185
32  chr22   19880839       20260776     NR_031618       MIR1286
33  chr22   19880839       20260776     NR_031706       MIR1306
34  chr22   19880839       20260776     NR_037412       MIR3618
35  chr22   19880839       20260776     NR_038460     LOC284865
36  chr22   19880839       20260776     NR_039918       MIR4761
37  chr22   19880839       20260776     NR_106874       MIR6816
38   chr5   17711545       19006823     NR_134286     LOC646241
40   chr7  143040493      143176257     NM_000083         CLCN1
41   chr7  143040493      143176257  NM_001278297       FAM131B
42   chr7  143040493      143176257  NM_001322263  LOC100507507
43   chr7  143040493      143176257     NM_003461           ZYX
44   chr7  143040493      143176257     NM_005232         EPHA1
46   chr7  143040493      143176257     NM_176883       TAS2R41
47   chr7  143040493      143176257     NM_177437       TAS2R60
48   chr7  143040493      143176257     NR_033897     EPHA1-AS1
49   chr7  143040493      143176257     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245025731      245566776  NM_001143943        EFCAB2
2    chr1  245025731      245566776     NM_004501        HNRNPU
3    chr1  245025731      245566776     NM_018012        KIF26B
5    chr1  245025731      245566776     NR_111907  LOC101928068
6   chr10   19622681       19736593  NM_001142308        MALRD1
7   chr14   21847265       21983667  NM_001163380         RAB2B
8   chr14   21847265       21983667  NM_001170629          CHD8
9   chr14   21847265       21983667  NM_001303523          TOX4
10  chr14   21847265       21983667     NM_007192       SUPT16H
11  chr14   21847265       21983667     NM_019852        METTL3
14  chr14   21847265       21983667     NR_002916        SNORD8
15  chr14   21847265       21983667     NR_003029        SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  120563135      120688210     NM_002859           PXN
1   chr12  120563135      120688210     NM_006836          GCN1
3   chr12  120563135      120688210     NM_053275         RPLP0
4   chr12  120563135      120688210     NR_038924       PXN-AS1
5   chr12  120563135      120688210     NR_039719       MIR4498
6   chr13  113106928      113341613  NM_001286278       TUBGCP3
9   chr13  113106928      113341613     NM_207440      ATP11AUN
10  chr14   21786316       22054139  NM_001005465        OR10G3
11  chr14   21786316       22054139  NM_001163380         RAB2B
12  chr14   21786316       22054139  NM_001170629          CHD8
13  chr14   21786316       22054139  NM_001303523          TOX4
14  chr14   21786316       22054139     NM_007192       SUPT16H
15  chr14   21786316       22054139     NM_019852        METTL3
16  chr14   21786316       22054139     NM_020366       RPGRIP1
19  chr14   21786316       22054139     NR_002916        SNORD8
20  chr14   21786316       22054139     NR_003029        SNORD9
21  chr14   21786316       22054139     NR_111966         SALL2
23   chr7  143028460      143205324     NM_000083         CLCN1
24   chr7  143028460      143205324  NM_001278297       FAM131B
25   chr7  143028460      143205324  NM_001322263  LOC100507507
26   chr7  143028460      143205324     NM_003461           ZYX
27   chr7  143028460      143205324     NM_005232         EPHA1
29   chr7  143028460      143205324     NM_176883       TAS2R41
30   chr7  143028460      143205324     NM_177437       TAS2R60
31   chr7  143028460      143205324     NR_033897     EPHA1-AS1
32   chr7  143028460      143205324     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145330841      145461149  NM_001277444         NBPF9
1    chr1  145330841      145461149  NM_001278267        NBPF20
2    chr1  145330841      145461149  NM_001302371        NBPF10
3    chr1  145330841      145461149  NM_001313972         TXNIP
5    chr1  145330841      145461149     NM_032305       POLR3GL
6    chr1  145330841      145461149     NM_145277          HFE2
7    chr1  145330841      145461149     NR_104217       NBPF25P
8    chr1  145330841      145461149     NR_125967  LOC101928979
9   chr14   21773133       22177928  NM_001001912         OR4E2
10  chr14   21773133       22177928  NM_001005465        OR10G3
11  chr14   21773133       22177928  NM_001005466        OR10G2
12  chr14   21773133       22177928  NM_001163380         RAB2B
13  chr14   21773133       22177928  NM_001170629          CHD8
14  chr14   21773133       22177928  NM_001303523          TOX4
15  chr14   21773133       22177928  NM_001317107         OR4E1
16  chr14   21773133       22177928     NM_007192       SUPT16H
17  chr14   21773133       22177928     NM_019852        METTL3
18  chr14   21773133       22177928     NM_020366       RPGRIP1
21  chr14   21773133       22177928     NR_002916        SNORD8
22  chr14   21773133       22177928     NR_003029        SNORD9
23  chr14   21773133       22177928     NR_111966         SALL2
25   chr7  124794419      125013643     NR_110183  LOC101928254
26   chr7  124794419      125013643     NR_110188  LOC101928283
27   chr9   14979030       15116794     NR_003920     LOC389705,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21761723       21877131  NM_001170629          CHD8
1   chr14   21761723       21877131     NM_007192       SUPT16H
2   chr14   21761723       21877131     NM_020366       RPGRIP1
4   chr14   21761723       21877131     NR_002916        SNORD8
5   chr14   21761723       21877131     NR_003029        SNORD9
6    chr2   77940934       78064069     NR_110288  LOC101927967
7   chr20   14809250       14969859     NM_080676       MACROD2
8   chr20   14809250       14969859     NR_037841   MACROD2-AS1
10   chr6   79321238       81799374     NM_000056        BCKDHB
11   chr6   79321238       81799374  NM_001010844      IRAK1BP1
12   chr6   79321238       81799374  NM_001122769          LCA5
13   chr6   79321238       81799374  NM_001166691           TTK
14   chr6   79321238       81799374  NM_001201362         HMGN3
15   chr6   79321238       81799374     NM_017934          PHIP
16   chr6   79321238       81799374     NM_022726        ELOVL4
17   chr6   79321238       81799374     NM_031469      SH3BGRL2
18   chr6   79321238       81799374     NR_004393          RNY4
19   chr6   79321238       81799374     NR_040671     HMGN3-AS1
20   chr6   79321238       81799374     NR_130915         LCAL1
21   chr6   79321238       81799374     NR_131786     LINC01621
22   chr7  110679211      111148780  NM_001099658         LRRN3
23   chr7  110679211      111148780  NM_001244606        IMMP2L
25   chr9   20778535       20906373     NM_017794         FOCAD,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr13   54790033       54894447     NR_031628   MIR1297
1   chr14   21767981       21927390  NM_001163380     RAB2B
2   chr14   21767981       21927390  NM_001170629      CHD8
3   chr14   21767981       21927390     NM_007192   SUPT16H
4   chr14   21767981       21927390     NM_020366   RPGRIP1
7   chr14   21767981       21927390     NR_002916    SNORD8
8   chr14   21767981       21927390     NR_003029    SNORD9
9    chr2   62153857       62415016  NM_001321781    COMMD1
11  chr22   20062631       20172903  NM_001190326     DGCR8
12  chr22   20062631       20172903  NM_001243537   CCDC188
13  chr22   20062631       20172903  NM_001278639    RANBP1
16  chr22   20062631       20172903     NM_013373    ZDHHC8
17  chr22   20062631       20172903     NM_022727    TRMT2A
18  chr22   20062631       20172903     NR_031706   MIR1306
19  chr22   20062631       20172903     NR_037412   MIR3618
20  chr22   20062631       20172903     NR_106874   MIR6816
21   chr6  162808012      163403691  NM_001080378     PACRG
23   chr6  162808012      163403691     NM_013988     PARK2
24   chr8    8172668        8304115  NM_001080826     PRAG1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21942529       22819984  NM_001001912     OR4E2
1   chr14   21942529       22819984  NM_001005465    OR10G3
2   chr14   21942529       22819984  NM_001005466    OR10G2
3   chr14   21942529       22819984  NM_001163380     RAB2B
4   chr14   21942529       22819984  NM_001303523      TOX4
5   chr14   21942529       22819984  NM_001317107     OR4E1
6   chr14   21942529       22819984     NM_019852    METTL3
8   chr14   21942529       22819984     NR_111966     SALL2
10  chr19    1137488        1245689     NM_000455     STK11
11  chr19    1137488        1245689  NM_001001975     ATP5D
12  chr19    1137488        1245689     NM_014963     SBNO2
13  chr19    1137488        1245689     NM_152769     CBARP
14   chr4   98854814       98958000     NM_174952     STPG2
15   chr7   88244938       88561114     NM_152706   C7orf62
16   chr7   88244938       88561114     NM_181646   ZNF804B
17   chr7  110682921      110788523  NM_001099658     LRRN3
18   chr7  110682921      110788523  NM_001244606    IMMP2L
20   chr9  116554997      116657966  NM_001318041    ZNF618,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82455076       82668187  NM_001297704        ADGRL2
2    chr1  143138656      143798784  NM_001123068       PPIAL4G
3    chr1  143138656      143798784     NR_104014     LINC01138
4    chr1  143138656      143798784     NR_106967       MIR6077
5    chr1  143138656      143798784     NR_110761  LOC102723769
6    chr1  143138656      143798784     NR_111930  LOC100132057
7   chr14   21882249       22087467  NM_001005465        OR10G3
8   chr14   21882249       22087467  NM_001163380         RAB2B
9   chr14   21882249       22087467  NM_001170629          CHD8
10  chr14   21882249       22087467  NM_001303523          TOX4
11  chr14   21882249       22087467     NM_019852        METTL3
14  chr14   21882249       22087467     NR_111966         SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145279117      145400247  NM_001277444         NBPF9
1    chr1  145279117      145400247  NM_001278267        NBPF20
2    chr1  145279117      145400247  NM_001302371        NBPF10
3    chr1  145279117      145400247     NM_203458      NOTCH2NL
4    chr1  145279117      145400247     NR_104217       NBPF25P
5    chr1  145279117      145400247     NR_125967  LOC101928979
6   chr14   21835778       22173450  NM_001001912         OR4E2
7   chr14   21835778       22173450  NM_001005465        OR10G3
8   chr14   21835778       22173450  NM_001005466        OR10G2
9   chr14   21835778       22173450  NM_001163380         RAB2B
10  chr14   21835778       22173450  NM_001170629          CHD8
11  chr14   21835778       22173450  NM_001303523          TOX4
12  chr14   21835778       22173450  NM_001317107         OR4E1
13  chr14   21835778       22173450     NM_007192       SUPT16H
14  chr14   21835778       22173450     NM_019852        METTL3
17  chr14   21835778       22173450     NR_002916        SNORD8
18  chr14   21835778       22173450     NR_003029        SNORD9
19  chr14   21835778       22173450     NR_111966         SALL2
21  chr16   21695950       21833683  NM_001161683          OTOA
24  chr16   21695950       21833683     NR_003370        RRN3P1
25  chr21   13562632       14634891     NR_026916    ANKRD30BP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16372036       16525241  NM_001004067         NOMO3
1   chr16   16372036       16525241  NM_001282511        NPIPA8
2   chr16   16372036       16525241     NR_036140     MIR3179-1
3   chr16   16372036       16525241     NR_036141     MIR3180-1
4   chr16   16372036       16525241     NR_036142     MIR3180-2
5   chr16   16372036       16525241     NR_036447        PKD1P1
6   chr16   16372036       16525241     NR_103772  LOC100288162
7   chr16   16372036       16525241     NR_106766     MIR6511A1
8   chr16   16372036       16525241     NR_106971     MIR6511A4
9   chr16   16372036       16525241     NR_107060     MIR6770-2
10  chr16   16372036       16525241     NR_128713     MIR3670-4
11  chr17   48014448       48124649     NM_001934          DLX4
12  chr17   48014448       48124649     NM_005220          DLX3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18376762       18522637  NM_001004060         NOMO2
1   chr16   18376762       18522637  NM_001282511        NPIPA8
2   chr16   18376762       18522637     NR_036140     MIR3179-1
3   chr16   18376762       18522637     NR_036142     MIR3180-2
4   chr16   18376762       18522637     NR_036144     MIR3180-3
5   chr16   18376762       18522637     NR_037442     MIR3670-1
6   chr16   18376762       18522637     NR_103772  LOC100288162
7   chr16   18376762       18522637     NR_106971     MIR6511A4
8   chr16   18376762       18522637     NR_107060     MIR6770-2
9   chr16   21464754       21901251  NM_001077180        METTL9
10  chr16   21464754       21901251  NM_001161683          OTOA
12  chr16   21464754       21901251  NM_001310148        NPIPB4
13  chr16   21464754       21901251     NM_005849         IGSF6
16  chr16   21464754       21901251     NR_002594      SLC7A5P2
17  chr16   21464754       21901251     NR_003370        RRN3P1
18  chr16   21464754       21901251     NR_027155        SMG1P3
19  chr16   21464754       21901251     NR_049833     MIR3680-2
20  chr16   21464754       21901251     NR_110930  LOC101927814
21   chr2   97445211       97568715  NM_001122646       FAM178B
23   chr2   97445211       97568715     NM_016466       ANKRD39
25   chr2   97445211       97568715     NM_017623         CNNM3
26   chr2   97445211       97568715     NM_017789        SEMA4C
27   chr2   97445211       97568715     NM_020184         CNNM4
28   chr2   97445211       97568715     NM_144994       ANKRD23
29   chr2   97445211       97568715     NR_036074       MIR3127
30  chr22   19868438       20001688     NM_000754          COMT
33  chr22   19868438       20001688  NM_001282512        TXNRD2
34  chr22   19868438       20001688     NM_001670         ARVCF
37  chr22   19868438       20001688     NR_039918       MIR4761,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21764477       21904977  NM_001170629      CHD8
1   chr14   21764477       21904977     NM_007192   SUPT16H
2   chr14   21764477       21904977     NM_020366   RPGRIP1
4   chr14   21764477       21904977     NR_002916    SNORD8
5   chr14   21764477       21904977     NR_003029    SNORD9
6   chr19     840971         982356  NM_001317335       CFD
7   chr19     840971         982356     NM_001972     ELANE
8   chr19     840971         982356     NM_002777     PRTN3
9   chr19     840971         982356     NM_005224    ARID3A
10  chr19     840971         982356     NM_005481     MED16
11  chr19     840971         982356     NM_032551    KISS1R
12  chr19     840971         982356     NM_138774    R3HDM4
13  chr19     840971         982356     NR_125730    RNU6-2
14   chr6   97419748       97587727  NM_001286251    KLHL32
18   chr6   97419748       97587727     NR_031679  MIR548H3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   97379938       98669601     NM_000110       DPYD
2    chr1   97379938       98669601     NR_029679     MIR137
3    chr1   97379938       98669601     NR_039604    MIR2682
4    chr1   97379938       98669601     NR_046105   MIR137HG
5    chr1   97379938       98669601     NR_046590   DPYD-AS1
6    chr1   97379938       98669601     NR_046591   DPYD-AS2
7   chr12   72525682       72665777     NR_026836  TRHDE-AS1
9   chr14   21753639       21891464  NM_001170629       CHD8
10  chr14   21753639       21891464     NM_007192    SUPT16H
11  chr14   21753639       21891464     NM_020366    RPGRIP1
13  chr14   21753639       21891464     NR_002916     SNORD8
14  chr14   21753639       21891464     NR_003029     SNORD9
15   chr3   25980305       26705636  NM_001317808     LRRC3B
19   chr9     197488         350754  NM_001190458      DOCK8
20   chr9     197488         350754     NM_152569    C9orf66,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   67944856       68053032  NM_001127384       CTNNA3
2   chr13   54849775       55276348     NR_031628      MIR1297
3    chr2   25229540       25515333  NM_001319099        EFR3B
4    chr2   25229540       25515333  NM_001319205         POMC
5    chr2   25229540       25515333  NM_001320892       DNMT3A
12   chr2   25229540       25515333     NR_034113  DNAJC27-AS1
13   chr2   25229540       25515333     NR_132378    LINC01381
14  chr20   14758866       14879433     NM_080676      MACROD2
15  chr20   14758866       14879433     NR_037841  MACROD2-AS1
16   chr3    1810273        3402903  NM_001173482         CRBN
17   chr3    1810273        3402903  NM_001206955        CNTN4
19   chr3    1810273        3402903  NM_001302946        TRNT1
21   chr3    1810273        3402903     NM_175726        IL5RA
24   chr3    1810273        3402903     NR_046554    CNTN4-AS1
25   chr3    1810273        3402903     NR_046555    CNTN4-AS2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   95893652       96031385     NM_032427     MAML2
1  chr14   21681512       21883328  NM_001170629      CHD8
2  chr14   21681512       21883328     NM_007192   SUPT16H
3  chr14   21681512       21883328     NM_020366   RPGRIP1
5  chr14   21681512       21883328     NM_031314    HNRNPC
6  chr14   21681512       21883328     NR_002916    SNORD8
7  chr14   21681512       21883328     NR_003029    SNORD9
8   chr4  169253699      169400711  NM_001012967    DDX60L,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81425531       81534839  NM_001278495      NUTM2B
1   chr10   81425531       81534839     NR_027512     BEND3P3
2   chr10   81425531       81534839     NR_120611  NUTM2B-AS1
4   chr11    4242385        4721584  NM_001004137      OR52M1
5   chr11    4242385        4721584  NM_001004751      OR51D1
6   chr11    4242385        4721584  NM_001005161      OR52B4
7   chr11    4242385        4721584  NM_001005169      OR52I1
8   chr11    4242385        4721584  NM_001005170      OR52I2
9   chr11    4242385        4721584  NM_001005171      OR52K1
10  chr11    4242385        4721584  NM_001005172      OR52K2
11  chr11    4242385        4721584     NM_003141      TRIM21
12  chr11    4242385        4721584     NM_018073      TRIM68
13  chr11    4242385        4721584     NM_030774      OR51E2
14  chr11    4242385        4721584     NM_144663    C11orf40
15  chr11    4242385        4721584     NM_152430      OR51E1
16  chr11   40750400       40863011  NM_001258419      LRRC4C
17  chr14   21843387       22439066  NM_001001912       OR4E2
18  chr14   21843387       22439066  NM_001005465      OR10G3
19  chr14   21843387       22439066  NM_001005466      OR10G2
20  chr14   21843387       22439066  NM_001163380       RAB2B
21  chr14   21843387       22439066  NM_001170629        CHD8
22  chr14   21843387       22439066  NM_001303523        TOX4
23  chr14   21843387       22439066  NM_001317107       OR4E1
24  chr14   21843387       22439066     NM_007192     SUPT16H
25  chr14   21843387       22439066     NM_019852      METTL3
28  chr14   21843387       22439066     NR_002916      SNORD8
29  chr14   21843387       22439066     NR_003029      SNORD9
30  chr14   21843387       22439066     NR_111966       SALL2
32  chr17   63416584       63855696  NM_001037325      CEP112
35  chr17   63416584       63855696     NM_004655       AXIN2
36  chr17   63416584       63855696     NR_131984      CRAT40
37   chr2   35674835       35783491     NR_039629    MIR548AD
38   chr4   69309693       69932150     NM_001075     UGT2B10
40   chr4   69309693       69932150     NM_001076     UGT2B15
41   chr4   69309693       69932150     NM_001077     UGT2B17
42   chr4   69309693       69932150     NM_014058   TMPRSS11E
43   chr4   69309693       69932150     NM_024743      UGT2A3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  120510231      120647914     NM_153810     CACUL1
1   chr11   89137437       90512744  NM_001105522   TRIM49D2
3   chr11   89137437       90512744  NM_001136486     TRIM64
4   chr11   89137437       90512744  NM_001143837       NOX4
5   chr11   89137437       90512744  NM_001143975     UBTFL1
6   chr11   89137437       90512744  NM_001144073    CHORDC1
7   chr11   89137437       90512744  NM_001164397    TRIM64B
8   chr11   89137437       90512744  NM_001195234    TRIM49C
9   chr11   89137437       90512744  NM_001206627   TRIM49D1
11  chr11   89137437       90512744  NM_001271942     TRIM77
16  chr11   89137437       90512744     NM_005467    NAALAD2
17  chr11   89137437       90512744     NM_020358     TRIM49
18  chr11   89137437       90512744     NM_153696     FOLH1B
19  chr11   89137437       90512744     NR_028346   TRIM53AP
21  chr11   89137437       90512744     NR_039711    MIR4490
22  chr11   89137437       90512744     NR_104190   DISC1FP1
24  chr15   79750424       79890458     NM_015206   KIAA1024
25  chr16    8587416        8708950  NM_001146336    TMEM114
29  chr22   18976651       19689956  NM_001035247      UFD1L
30  chr22   18976651       19689956  NM_001166242   C22orf39
31  chr22   18976651       19689956  NM_001178010      CDC45
32  chr22   18976651       19689956  NM_001184781      DGCR2
33  chr22   18976651       19689956  NM_001256534    SLC25A1
34  chr22   18976651       19689956  NM_001318151     MRPL40
36  chr22   18976651       19689956     NM_001835     CLTCL1
37  chr22   18976651       19689956     NM_003277      CLDN5
38  chr22   18976651       19689956     NM_003325       HIRA
40  chr22   18976651       19689956     NM_005315       GSC2
42  chr22   18976651       19689956     NM_022719     DGCR14
43  chr22   18976651       19689956     NM_053006      TSSK2
45  chr22   18976651       19689956     NR_002733      DGCR5
46  chr22   18976651       19689956     NR_024157     DGCR11
47  chr22   18976651       19689956     NR_024159      DGCR9
48  chr22   18976651       19689956     NR_024381  LINC00895
49  chr22   18976651       19689956     NR_026651     DGCR10
50  chr22   18976651       19689956     NR_103767  LINC01311
52   chr4   66771988       67251187     NR_031673   MIR1269A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144789660      145052520  NM_001002810       PDE4DIP
7    chr1  144789660      145052520  NM_001277444         NBPF9
8    chr1  144789660      145052520  NM_001278267        NBPF20
10   chr1  144789660      145052520     NR_102405         NBPF8
11  chr12   85637864       85907079  NM_001079910        LRRIQ1
12  chr12   85637864       85907079     NM_006982          ALX1
13  chr16    6339284        6525224  NM_001308117        RBFOX1
15  chr16   68574497       71490958     NM_000903          NQO1
16  chr16   68574497       71490958  NM_001039690         CHTF8
18  chr16   68574497       71490958  NM_001099642         CMTR2
19  chr16   68574497       71490958  NM_001136214       CLEC18A
20  chr16   68574497       71490958  NM_001172772          IL34
21  chr16   68574497       71490958  NM_001195139          COG4
22  chr16   68574497       71490958  NM_001198542         HYDIN
23  chr16   68574497       71490958  NM_001199280          HAS3
24  chr16   68574497       71490958  NM_001199434          NIP7
25  chr16   68574497       71490958  NM_001257172        DDX19B
28  chr16   68574497       71490958  NM_001270453          WWP2
34  chr16   68574497       71490958  NM_001304492         ZNF23
35  chr16   68574497       71490958  NM_001305204         ZFP90
37  chr16   68574497       71490958  NM_001317184          CDH1
38  chr16   68574497       71490958  NM_001317195          CDH3
39  chr16   68574497       71490958  NM_001320525        DDX19A
44  chr16   68574497       71490958     NM_001605          AARS
45  chr16   68574497       71490958     NM_001740         CALB2
47  chr16   68574497       71490958     NM_005652         TERF2
48  chr16   68574497       71490958     NM_006750         SNTB2
49  chr16   68574497       71490958     NM_006927       ST3GAL2
51  chr16   68574497       71490958     NM_012426         SF3B3
52  chr16   68574497       71490958     NM_013245         VPS4A
..    ...        ...            ...           ...           ...
60  chr16   68574497       71490958     NM_032382          COG8
61  chr16   68574497       71490958     NM_032830          UTP4
62  chr16   68574497       71490958     NM_058219        EXOSC6
63  chr16   68574497       71490958     NM_138383        MTSS1L
65  chr16   68574497       71490958     NM_144676         TMED6
66  chr16   68574497       71490958     NM_145059           FUK
69  chr16   68574497       71490958     NM_173214         NFAT5
71  chr16   68574497       71490958     NM_173619       CLEC18C
74  chr16   68574497       71490958     NR_003079      SNORD111
75  chr16   68574497       71490958     NR_003610       PDXDC2P
76  chr16   68574497       71490958     NR_029681        MIR140
77  chr16   68574497       71490958     NR_031719       MIR1538
78  chr16   68574497       71490958     NR_033959        SMG1P7
79  chr16   68574497       71490958     NR_034083     VAC14-AS1
80  chr16   68574497       71490958     NR_036265     MIR1972-2
81  chr16   68574497       71490958     NR_037420     SNORD111B
82  chr16   68574497       71490958     NR_039997  LOC100506083
83  chr16   68574497       71490958     NR_074074          NOB1
84  chr16   68574497       71490958     NR_106988     MIR7641-2
85  chr16   68574497       71490958     NR_126007     LOC400541
86  chr16   68574497       71490958     NR_135173  LOC105371328
87  chr20   23362246       23634685     NM_000099          CST3
88  chr20   23362246       23634685  NM_001008693          CST9
89  chr20   23362246       23634685  NM_001283018          NAPB
91  chr20   23362246       23634685     NM_005492          CST8
92  chr20   23362246       23634685     NM_080610         CST9L
93  chr20   23362246       23634685     NM_080830         CST11
94  chr20   23362246       23634685     NM_138283         CSTL1
95  chr20   23362246       23634685     NR_001279        CST13P
96   chr3  162910631      163015232     NR_033945     LINC01192

[65 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  142422244      143954377  NM_001123068        PPIAL4G
1    chr1  142422244      143954377  NM_001287385         FAM72C
2    chr1  142422244      143954377  NM_001345942         FAM72D
6    chr1  142422244      143954377     NR_046228    ANKRD20A12P
7    chr1  142422244      143954377     NR_104014      LINC01138
8    chr1  142422244      143954377     NR_106967        MIR6077
9    chr1  142422244      143954377     NR_110761   LOC102723769
10   chr1  142422244      143954377     NR_111930   LOC100132057
12  chr16   15076762       15243871  NM_001270767          NTAN1
13  chr16   15076762       15243871  NM_001285445         PDXDC1
18  chr16   15076762       15243871  NM_001301064           RRN3
20  chr16   15076762       15243871     NR_106775      MIR6511B1
21  chr16   15076762       15243871     NR_106965      MIR6511B2
22  chr16   15076762       15243871     NR_123721  PKD1P6-NPIPP1
24  chr16   15076762       15243871     NR_125434   LOC100505915
25  chr20    3013573        3444465     NM_000490            AVP
26  chr20    3013573        3444465     NM_000915            OXT
27  chr20    3013573        3444465  NM_001009984      C20orf194
28  chr20    3013573        3444465  NM_001174089        SLC4A11
30  chr20    3013573        3444465  NM_001267584          UBOX5
31  chr20    3013573        3444465  NM_001267623           ITPA
32  chr20    3013573        3444465  NM_001282533          LZTS3
34  chr20    3013573        3444465     NM_002836          PTPRA
35  chr20    3013573        3444465     NM_021826        FASTKD5
36  chr20    3013573        3444465     NM_023935         DDRGK1
37  chr20    3013573        3444465     NM_030811         MRPS26
41  chr20    3013573        3444465     NM_178332          GNRH2
42  chr20    3013573        3444465     NR_038395      UBOX5-AS1
45  chr20   14668020       14779293     NM_080676        MACROD2,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   76600186       77166323     NR_039870        MIR4719
1   chr16   76600186       77166323     NR_110934   LOC101928203
2   chr19    9377006        9527044  NM_001172650  ZNF559-ZNF177
3   chr19    9377006        9527044  NM_001172651         ZNF177
4   chr19    9377006        9527044  NM_001202406         ZNF559
7   chr19    9377006        9527044  NM_001271314         ZNF266
9   chr19    9377006        9527044     NM_198535         ZNF699
10  chr22   18987203       19324875  NM_001184781          DGCR2
11  chr22   18987203       19324875  NM_001256534        SLC25A1
12  chr22   18987203       19324875     NM_001835         CLTCL1
13  chr22   18987203       19324875     NM_003325           HIRA
14  chr22   18987203       19324875     NM_005315           GSC2
16  chr22   18987203       19324875     NM_022719         DGCR14
17  chr22   18987203       19324875     NM_053006          TSSK2
18  chr22   18987203       19324875     NR_024157         DGCR11
19  chr22   18987203       19324875     NR_024159          DGCR9
20  chr22   18987203       19324875     NR_026651         DGCR10
21  chr22   18987203       19324875     NR_103767      LINC01311
22  chr22   18987203       19324875     NR_110533          DGCR5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   47850667       48316603  NM_001113498         MDGA2
1   chr14   47850667       48316603     NR_037503       MIR548Y
2   chr14   47850667       48316603     NR_039996     LINC00648
3   chr16   18367124       18921020  NM_001004060         NOMO2
4   chr16   18367124       18921020     NM_001019        RPS15A
5   chr16   18367124       18921020  NM_001282511        NPIPA8
6   chr16   18367124       18921020  NM_001313858       ARL6IP1
7   chr16   18367124       18921020     NM_015092          SMG1
9   chr16   18367124       18921020     NR_003569       ABCC6P1
10  chr16   18367124       18921020     NR_036140     MIR3179-1
11  chr16   18367124       18921020     NR_036142     MIR3180-2
12  chr16   18367124       18921020     NR_036144     MIR3180-3
13  chr16   18367124       18921020     NR_037442     MIR3670-1
14  chr16   18367124       18921020     NR_103772  LOC100288162
15  chr16   18367124       18921020     NR_106971     MIR6511A4
16  chr16   18367124       18921020     NR_107060     MIR6770-2
17  chr19   10323849       10498846     NM_000201         ICAM1
18  chr19   10323849       10498846  NM_001031734         FDX1L
19  chr19   10323849       10498846  NM_001103167         ZGLP1
20  chr19   10323849       10498846  NM_001320608         ICAM3
21  chr19   10323849       10498846     NM_001544         ICAM4
22  chr19   10323849       10498846     NM_003259         ICAM5
23  chr19   10323849       10498846     NM_003331          TYK2
24  chr19   10323849       10498846     NM_004230         S1PR2
25  chr19   10323849       10498846     NM_015956         MRPL4
26  chr19   10323849       10498846     NM_133452        RAVER1
28  chr19   10323849       10498846     NR_036206       MIR4322,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   60272128       61570650  NM_001079807          PGA3
1   chr11   60272128       61570650  NM_001079808          PGA4
2   chr11   60272128       61570650  NM_001127392          MYRF
3   chr11   60272128       61570650  NM_001142565         CPSF7
4   chr11   60272128       61570650  NM_001145077       LRRC10B
5   chr11   60272128       61570650  NM_001161452      CYB561A3
6   chr11   60272128       61570650  NM_001170753       PPP1R32
7   chr11   60272128       61570650  NM_001173990       TMEM216
8   chr11   60272128       61570650  NM_001278320        MS4A13
10  chr11   60272128       61570650  NM_001300773          SYT7
11  chr11   60272128       61570650  NM_001310141        MS4A18
12  chr11   60272128       61570650  NM_001330281       TMEM138
13  chr11   60272128       61570650  NM_001346456           CD5
14  chr11   60272128       61570650     NM_001923          DDB1
15  chr11   60272128       61570650     NM_004111          FEN1
16  chr11   60272128       61570650     NM_004778        PTGDR2
17  chr11   60272128       61570650     NM_006133         DAGLA
18  chr11   60272128       61570650     NM_006725           CD6
20  chr11   60272128       61570650     NM_013402         FADS1
21  chr11   60272128       61570650     NM_014206       TMEM258
23  chr11   60272128       61570650     NM_014224          PGA5
24  chr11   60272128       61570650     NM_014502        PRPF19
25  chr11   60272128       61570650     NM_015533          TKFC
27  chr11   60272128       61570650     NM_017716        MS4A12
28  chr11   60272128       61570650     NM_017841        SDHAF2
29  chr11   60272128       61570650     NM_017870      TMEM132A
30  chr11   60272128       61570650     NM_017966        VPS37C
31  chr11   60272128       61570650     NM_024092       TMEM109
32  chr11   60272128       61570650     NM_024098        CCDC86
34  chr11   60272128       61570650     NM_031457         MS4A8
35  chr11   60272128       61570650     NM_152717        MS4A15
36  chr11   60272128       61570650     NM_152718          VWCE
37  chr11   60272128       61570650     NM_206893        MS4A10
38  chr11   60272128       61570650     NM_207341           ZP1
39  chr11   60272128       61570650     NR_002775       RPLP0P2
40  chr11   60272128       61570650     NR_026882  DKFZP434K028
41  chr11   60272128       61570650     NR_026946     LINC00301
42  chr11   60272128       61570650     NR_027391       SLC15A3
43  chr11   60272128       61570650     NR_030342        MIR611
44  chr11   60272128       61570650     NR_039708       MIR4488
45  chr11   60272128       61570650     NR_110189  LOC101927495
46  chr14   21570173       21872914  NM_001004731        OR5AU1
47  chr14   21570173       21872914  NM_001102454        ZNF219
48  chr14   21570173       21872914  NM_001146683       TMEM253
49  chr14   21570173       21872914  NM_001170629          CHD8
50  chr14   21570173       21872914     NM_007192       SUPT16H
51  chr14   21570173       21872914     NM_020366       RPGRIP1
53  chr14   21570173       21872914     NM_031314        HNRNPC
54  chr14   21570173       21872914     NR_002916        SNORD8
55  chr14   21570173       21872914     NR_003029        SNORD9
56  chr14   21570173       21872914     NR_038970     LINC00641
58  chr17    5534887        6495470  NM_001195228        FAM64A
59  chr17    5534887        6495470  NM_001285402         AIPL1
62  chr17    5534887        6495470     NM_014804      KIAA0753
63  chr17    5534887        6495470     NM_015253         WSCD1
64  chr17    5534887        6495470     NM_031220       PITPNM3
65  chr17    5534887        6495470     NR_040000     LOC339166
66   chr2  181905481      182037623  NM_001278554        UBE2E3
69   chr2  181905481      182037623     NR_130784  LOC101927156
70   chr3  105585244      105734024  NM_001321786          CBLB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  121997118      122118063     NR_024430      MIR100HG
1   chr11  121997118      122118063     NR_029477     MIRLET7A2
2   chr11  121997118      122118063     NR_029515        MIR100
9   chr15   28123396       29516705     NM_000275          OCA2
10  chr15   28123396       29516705  NM_001130414         APBA2
11  chr15   28123396       29516705  NM_001282468       GOLGA8M
13  chr15   28123396       29516705     NM_004667         HERC2
14  chr15   28123396       29516705     NM_015307      FAM189A1
15  chr15   28123396       29516705     NR_026589       WHAMMP2
16  chr15   28123396       29516705     NR_033351       GOLGA8F
18  chr15   28123396       29516705     NR_033353       GOLGA8G
20  chr15   28123396       29516705     NR_036443       HERC2P9
21  chr15   28123396       29516705     NR_036475  LOC100289656
22  chr15   28123396       29516705     NR_037599     PDCD6IPP2
23  chr15   28123396       29516705     NR_039734     MIR4509-3
25  chr15   28123396       29516705     NR_047567     GOLGA6L7P
26   chr2   97217355       97484017  NM_001115016        KANSL3
27   chr2   97217355       97484017  NM_001293083        FER1L5
28   chr2   97217355       97484017  NM_001319085        ARID5A
30   chr2   97217355       97484017  NM_001322354        LMAN2L
31   chr2   97217355       97484017     NM_017623         CNNM3
32   chr2   97217355       97484017     NM_020184         CNNM4
34   chr2   97217355       97484017     NR_036074       MIR3127
36   chr5  151350637      151472317     NR_109876    CTB-12O2.1
37   chr7   64030099       64141761  NM_001282360        ZNF107
38   chr7   64030099       64141761     NR_033245     LOC641746
39   chr7   64030099       64141761     NR_077227  LOC100128885
41   chr7   64030099       64141761     NR_106898       MIR6839
42   chr7  108472360      108688493  NM_001024607       C7orf66
43   chr7  110464193      110685974  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr16   16423631       16615029  NM_001282511       NPIPA8
1  chr16   16423631       16615029     NR_036447       PKD1P1
2  chr16   16423631       16615029     NR_106971    MIR6511A4
3  chr16   71112700       71261098  NM_001198542        HYDIN
6  chr20   14767192       15018745     NM_080676      MACROD2
7  chr20   14767192       15018745     NR_037841  MACROD2-AS1
9   chr7   18361281       18596248  NM_001204144        HDAC9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21833616       22068520  NM_001005465        OR10G3
1   chr14   21833616       22068520  NM_001163380         RAB2B
2   chr14   21833616       22068520  NM_001170629          CHD8
3   chr14   21833616       22068520  NM_001303523          TOX4
4   chr14   21833616       22068520     NM_007192       SUPT16H
5   chr14   21833616       22068520     NM_019852        METTL3
8   chr14   21833616       22068520     NR_002916        SNORD8
9   chr14   21833616       22068520     NR_003029        SNORD9
10  chr14   21833616       22068520     NR_111966         SALL2
12   chr4  169199970      169525629  NM_001012967        DDX60L
13   chr4  169199970      169525629  NM_001166108         PALLD
15   chr4  169199970      169525629     NM_017631         DDX60
16   chr7   64063697       64170450  NM_001282360        ZNF107
17   chr7   64063697       64170450     NR_077227  LOC100128885
19   chr7   64063697       64170450     NR_106898       MIR6839
20   chr7  110629320      110945246  NM_001099658         LRRN3
21   chr7  110629320      110945246  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0    chr1   97448081       97565085     NM_000110               DPYD
1    chr1   97448081       97565085     NR_046590           DPYD-AS1
2   chr11   67289884       67883328     NM_000695            ALDH3B2
3   chr11   67289884       67883328     NM_000852              GSTP1
5   chr11   67289884       67883328  NM_001161473            ALDH3B1
6   chr11   67289884       67883328  NM_001166102             NDUFV1
7   chr11   67289884       67883328  NM_001243750              NUDT8
9   chr11   67289884       67883328  NM_001318496              CABP2
10  chr11   67289884       67883328     NM_002496             NDUFS8
11  chr11   67289884       67883328     NM_005995              TBX10
12  chr11   67289884       67883328     NM_006019             TCIRG1
14  chr11   67289884       67883328     NM_030930            UNC93B1
15  chr11   67289884       67883328     NM_080658               ACY3
17  chr11   67289884       67883328     NM_212469               CHKA
18  chr11   67289884       67883328     NR_024249           FAM86C2P
19  chr11   67289884       67883328     NR_033791             DOC2GP
20  chr11   67289884       67883328     NR_039840            MIR4691
21  chr11   67289884       67883328     NR_106811            MIR6753
22  chr11   67289884       67883328     NR_106963            MIR7113
23  chr11   67289884       67883328     NR_130935           C11orf72
24  chr14   21691839       21804264     NM_020366            RPGRIP1
25  chr14   21691839       21804264     NM_031314             HNRNPC
26  chr22   17043822       19281158  NM_001037814               GAB4
27  chr22   17043822       19281158  NM_001122731             MICAL3
28  chr22   17043822       19281158  NM_001127649              PEX26
30  chr22   17043822       19281158  NM_001163079              CECR6
31  chr22   17043822       19281158  NM_001184781              DGCR2
32  chr22   17043822       19281158  NM_001193414              TUBA8
33  chr22   17043822       19281158  NM_001195226              PRODH
35  chr22   17043822       19281158  NM_001244567                BID
..    ...        ...            ...           ...                ...
61  chr22   17043822       19281158     NM_053006              TSSK2
62  chr22   17043822       19281158     NM_175878               XKR3
64  chr22   17043822       19281158     NR_001591             TPTEP1
65  chr22   17043822       19281158     NR_002733              DGCR5
66  chr22   17043822       19281158     NR_003267              GGT3P
67  chr22   17043822       19281158     NR_003607            HSFY1P1
68  chr22   17043822       19281158     NR_015352              CECR7
69  chr22   17043822       19281158     NR_024157             DGCR11
70  chr22   17043822       19281158     NR_024159              DGCR9
71  chr22   17043822       19281158     NR_024417           FLJ41941
72  chr22   17043822       19281158     NR_024482          CECR5-AS1
73  chr22   17043822       19281158     NR_026651             DGCR10
74  chr22   17043822       19281158     NR_030378             MIR648
75  chr22   17043822       19281158     NR_036168          MIR3198-1
76  chr22   17043822       19281158     NR_038398              CECR3
77  chr22   17043822       19281158     NR_040115  ANKRD62P1-PARP4P3
79  chr22   17043822       19281158     NR_103718          LINC00528
80  chr22   17043822       19281158     NR_103767          LINC01311
81  chr22   17043822       19281158     NR_103793       LOC100996342
83  chr22   17043822       19281158     NR_134584       LOC101929350
84  chr22   17043822       19281158     NR_135922       LOC102725072
85  chr22   17043822       19281158     NR_136561          LOC642643
86  chr22   17043822       19281158     NR_136570       LOC100996415
87  chr22   17043822       19281158     NR_136571       LOC100996432
88  chr22   17043822       19281158     NR_136574       LOC105379550
89  chr22   17187898       17386148     NM_175878               XKR3
90  chr22   17187898       17386148     NR_003607            HSFY1P1
91  chr22   17187898       17386148     NR_134584       LOC101929350
92   chr8   15986718       16091347     NM_002445               MSR1
94   chr9   22393416       22559147     NM_022160             DMRTA1

[75 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   71451350       71698013     NM_004616        TSPAN8
1   chr14   21751155       22036728  NM_001163380         RAB2B
2   chr14   21751155       22036728  NM_001170629          CHD8
3   chr14   21751155       22036728  NM_001303523          TOX4
4   chr14   21751155       22036728     NM_007192       SUPT16H
5   chr14   21751155       22036728     NM_019852        METTL3
6   chr14   21751155       22036728     NM_020366       RPGRIP1
9   chr14   21751155       22036728     NR_002916        SNORD8
10  chr14   21751155       22036728     NR_003029        SNORD9
11  chr14   21751155       22036728     NR_111966         SALL2
13  chr15   43764729       43873309  NM_001141979       TP53BP1
14  chr15   43764729       43873309  NM_001190214       PPIP5K1
15  chr15   43764729       43873309     NM_002373         MAP1A
18  chr16   21755288       21864146  NM_001161683          OTOA
19  chr16   21755288       21864146  NM_001310148        NPIPB4
22  chr16   21755288       21864146     NR_003370        RRN3P1
23   chr2   97491512       98136814  NM_001122646       FAM178B
24   chr2   97491512       98136814  NM_001164315       ANKRD36
26   chr2   97491512       98136814  NM_001320849        FAHD2B
27   chr2   97491512       98136814     NM_016466       ANKRD39
29   chr2   97491512       98136814     NM_017623         CNNM3
30   chr2   97491512       98136814     NM_017789        SEMA4C
31   chr2   97491512       98136814     NM_025190      ANKRD36B
32   chr2   97491512       98136814     NM_144994       ANKRD23
34   chr2   97491512       98136814     NR_103732  LOC100506076
38   chr2   97491512       98136814     NR_110209  LOC101927053
39   chr2   97491512       98136814     NR_130704  LOC100506123
41   chr7   64055344       65015927  NM_001007253        ERV3-1
42   chr7   64055344       65015927  NM_001160183        ZNF138
43   chr7   64055344       65015927  NM_001282360        ZNF107
44   chr7   64055344       65015927  NM_001287532         ZNF92
45   chr7   64055344       65015927     NM_015852        ZNF117
46   chr7   64055344       65015927     NM_021148        ZNF273
47   chr7   64055344       65015927     NR_033416        CCT6P3
49   chr7   64055344       65015927     NR_077227  LOC100128885
51   chr7   64055344       65015927     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142748111      144176610  NM_001123068       PPIAL4G
1    chr1  142748111      144176610  NM_001278267        NBPF20
2    chr1  142748111      144176610  NM_001287385        FAM72C
3    chr1  142748111      144176610  NM_001345942        FAM72D
7    chr1  142748111      144176610     NR_104014     LINC01138
8    chr1  142748111      144176610     NR_106967       MIR6077
9    chr1  142748111      144176610     NR_110761  LOC102723769
10   chr1  142748111      144176610     NR_111930  LOC100132057
12  chr13   54805766       54972921     NR_031628       MIR1297
13   chr7  133270637      133589026     NM_021807         EXOC4
14   chr7  133270637      133589026     NR_120513  LOC101928861,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27615117       28991514  NM_001034842        PTCHD3
1   chr10   27615117       28991514  NM_001242702           MKX
2   chr10   27615117       28991514  NM_001256411         RAB18
3   chr10   27615117       28991514  NM_001290020         ARMC4
6   chr10   27615117       28991514     NM_012342         BAMBI
8   chr10   27615117       28991514     NM_100264           WAC
10  chr10   27615117       28991514     NM_173496          MPP7
11  chr10   27615117       28991514     NR_033805       WAC-AS1
12  chr10   27615117       28991514     NR_107053       MIR8086
13  chr10   27615117       28991514     NR_121652       MKX-AS1
14  chr10   27615117       28991514     NR_132973      SNORD130
15  chr10   27615117       28991514     NR_134496  LOC105376468
17  chr10   27615117       28991514     NR_138082       ARMC4P1
18  chr14   21774910       21888362  NM_001170629          CHD8
19  chr14   21774910       21888362     NM_007192       SUPT16H
20  chr14   21774910       21888362     NM_020366       RPGRIP1
22  chr14   21774910       21888362     NR_002916        SNORD8
23  chr14   21774910       21888362     NR_003029        SNORD9
24  chr15   28711046       28848445     NR_033351       GOLGA8F
25  chr15   28711046       28848445     NR_033353       GOLGA8G
26  chr15   28711046       28848445     NR_039734     MIR4509-3
27   chr2   97224311       97334443  NM_001115016        KANSL3
28   chr2   97224311       97334443  NM_001293083        FER1L5
30   chr3  101101361      101222662  NM_001282803         SENP7
32   chr5   17460834       17572851     NR_134270  LOC102723526
33   chr5   66183374       66517910  NM_001164664         MAST4
37   chr5   66183374       66517910     NM_005582         CD180
39   chr5   66183374       66517910     NR_111908     MAST4-AS1
40   chr7  143007263      143194636     NM_000083         CLCN1
41   chr7  143007263      143194636  NM_001278297       FAM131B
42   chr7  143007263      143194636  NM_001322263  LOC100507507
43   chr7  143007263      143194636     NM_003461           ZYX
44   chr7  143007263      143194636     NM_005232         EPHA1
46   chr7  143007263      143194636     NM_176883       TAS2R41
47   chr7  143007263      143194636     NM_177437       TAS2R60
48   chr7  143007263      143194636     NR_033897     EPHA1-AS1
49   chr7  143007263      143194636     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68045548       69251628  NM_001127384        CTNNA3
3   chr10   68045548       69251628     NM_178011        LRRTM3
4   chr10   68045548       69251628     NR_106973       MIR7151
6   chr10   68045548       69251628     NR_111911  LOC101928961
7   chr10   81463295       81674353  NM_001278495        NUTM2B
8   chr10   81463295       81674353     NR_029407     LOC642361
9   chr10   81463295       81674353     NR_033857       BMS1P21
10  chr10   81463295       81674353     NR_120611    NUTM2B-AS1
13  chr14   21907280       22139698  NM_001001912         OR4E2
14  chr14   21907280       22139698  NM_001005465        OR10G3
15  chr14   21907280       22139698  NM_001005466        OR10G2
16  chr14   21907280       22139698  NM_001163380         RAB2B
17  chr14   21907280       22139698  NM_001303523          TOX4
18  chr14   21907280       22139698  NM_001317107         OR4E1
19  chr14   21907280       22139698     NM_019852        METTL3
21  chr14   21907280       22139698     NR_111966         SALL2
23  chr22   20101835       20655731  NM_001242313      TMEM191B
24  chr22   20101835       20655731  NM_001243537       CCDC188
25  chr22   20101835       20655731  NM_001278639        RANBP1
28  chr22   20101835       20655731     NM_013373        ZDHHC8
29  chr22   20101835       20655731     NM_015672        RIMBP3
30  chr22   20101835       20655731     NM_022727        TRMT2A
31  chr22   20101835       20655731     NM_023004         RTN4R
32  chr22   20101835       20655731     NM_033257        DGCR6L
33  chr22   20101835       20655731     NR_003563       PI4KAP1
34  chr22   20101835       20655731     NR_026919     LINC00896
35  chr22   20101835       20655731     NR_031618       MIR1286
36  chr22   20101835       20655731     NR_038460     LOC284865
37  chr22   20101835       20655731     NR_106874       MIR6816
38  chr22   20101835       20655731     NR_136560       FAM230A
39  chr22   20101835       20655731     NR_136569     LOC729461
40  chr22   20101835       20655731     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  186173538      186624903  NM_001164245        C1orf27
1    chr1  186173538      186624903  NM_001303232           PRG4
2    chr1  186173538      186624903     NM_002597            PDC
3    chr1  186173538      186624903     NM_003292            TPR
4    chr1  186173538      186624903     NM_022375           OCLM
6    chr1  186173538      186624903     NR_126002   LOC102724919
7   chr15   79725107       79826182     NM_015206       KIAA1024
8   chr16   14759609       15498840  NM_001128423         MPV17L
9   chr16   14759609       15498840  NM_001270767          NTAN1
10  chr16   14759609       15498840  NM_001277323         NPIPA3
12  chr16   14759609       15498840  NM_001277324         NPIPA2
14  chr16   14759609       15498840  NM_001277325         NPIPA5
15  chr16   14759609       15498840  NM_001285445         PDXDC1
20  chr16   14759609       15498840  NM_001301064           RRN3
22  chr16   14759609       15498840     NM_006985         NPIPA1
23  chr16   14759609       15498840     NM_014287          NOMO1
24  chr16   14759609       15498840     NM_016561           BFAR
25  chr16   14759609       15498840     NR_023387        ABCC6P2
26  chr16   14759609       15498840     NR_036140      MIR3179-1
27  chr16   14759609       15498840     NR_036141      MIR3180-1
28  chr16   14759609       15498840     NR_036142      MIR3180-2
29  chr16   14759609       15498840     NR_037466      MIR3180-4
30  chr16   14759609       15498840     NR_103772   LOC100288162
31  chr16   14759609       15498840     NR_106775      MIR6511B1
32  chr16   14759609       15498840     NR_106965      MIR6511B2
33  chr16   14759609       15498840     NR_106970      MIR6511A3
34  chr16   14759609       15498840     NR_107060      MIR6770-2
35  chr16   14759609       15498840     NR_123721  PKD1P6-NPIPP1
37  chr16   14759609       15498840     NR_125434   LOC100505915
38  chr16   14759609       15498840     NR_128713      MIR3670-4
39  chr16   14759609       15498840     NR_133651        PLA2G10,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21797601       21944545  NM_001163380      RAB2B
1   chr14   21797601       21944545  NM_001170629       CHD8
2   chr14   21797601       21944545     NM_007192    SUPT16H
3   chr14   21797601       21944545     NM_020366    RPGRIP1
6   chr14   21797601       21944545     NR_002916     SNORD8
7   chr14   21797601       21944545     NR_003029     SNORD9
8    chr2  110181123      110326047  NM_001099289     SH3RF3
9    chr2  110181123      110326047  NM_001321504     SEPT10
11   chr7  153869787      154125960  NM_001039350       DPP6
15   chr9   39043419       39486015  NM_001085452  SPATA31A1
16   chr9   39043419       39486015     NM_033655    CNTNAP3
17   chr9   39043419       39486015     NR_003528    ZNF658B
18   chr9   39043419       39486015     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143713220      143900959  NM_001123068       PPIAL4G
1    chr1  143713220      143900959  NM_001287385        FAM72C
2    chr1  143713220      143900959  NM_001345942        FAM72D
5    chr1  143713220      143900959     NR_104014     LINC01138
6    chr1  143713220      143900959     NR_111930  LOC100132057
8   chr10   81440961       81845179  NM_001270367       TMEM254
11  chr10   81440961       81845179  NM_001278495        NUTM2B
12  chr10   81440961       81845179     NM_003019         SFTPD
13  chr10   81440961       81845179     NR_002724         MBL1P
14  chr10   81440961       81845179     NR_027431   TMEM254-AS1
15  chr10   81440961       81845179     NR_027512       BEND3P3
16  chr10   81440961       81845179     NR_029407     LOC642361
17  chr10   81440961       81845179     NR_033857       BMS1P21
18  chr10   81440961       81845179     NR_120611    NUTM2B-AS1
21  chr16   21467158       21595255     NR_002594      SLC7A5P2
22  chr16   21467158       21595255     NR_027155        SMG1P3
23  chr16   21467158       21595255     NR_049833     MIR3680-2
24   chr4    9099028        9311204  NM_001256852      USP17L10
25   chr4    9099028        9311204  NM_001256853      USP17L12
27   chr4    9099028        9311204  NM_001256854      USP17L11
30   chr4    9099028        9311204  NM_001256855      USP17L13
31   chr4    9099028        9311204  NM_001256857      USP17L17
32   chr4    9099028        9311204  NM_001256860      USP17L19
33   chr4    9099028        9311204  NM_001256861      USP17L20
34   chr4    9099028        9311204  NM_001256894      USP17L15
35   chr4  169268180      169559327  NM_001012967        DDX60L
36   chr4  169268180      169559327  NM_001166108         PALLD
39   chr4  169190136      169335565  NM_001012967        DDX60L
41   chr4  169190136      169335565     NM_017631         DDX60,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  193287838      193478962     NR_125789  LINC01031
1    chr1  241526536      241765222     NM_000143         FH
2    chr1  241526536      241765222     NM_003679        KMO
3    chr1  241526536      241765222     NM_014322       OPN3
4   chr11   67299633       67556074     NM_000695    ALDH3B2
5   chr11   67299633       67556074     NM_000852      GSTP1
7   chr11   67299633       67556074  NM_001166102     NDUFV1
8   chr11   67299633       67556074  NM_001243750      NUDT8
9   chr11   67299633       67556074     NM_005995      TBX10
10  chr11   67299633       67556074     NM_080658       ACY3
12  chr11   67299633       67556074     NR_033791     DOC2GP
13  chr11   67299633       67556074     NR_130935   C11orf72
14  chr14   21892214       21993980  NM_001163380      RAB2B
15  chr14   21892214       21993980  NM_001170629       CHD8
16  chr14   21892214       21993980  NM_001303523       TOX4
17  chr14   21892214       21993980     NM_019852     METTL3
20  chr14   21892214       21993980     NR_111966      SALL2
22  chr18     576899         829813  NM_001012716     TYMSOS
23  chr18     576899         829813     NM_001071       TYMS
24  chr18     576899         829813  NM_001126123     ENOSF1
25  chr18     576899         829813  NM_001289036      CLUL1
29  chr18     576899         829813     NM_004066      CETN1
30  chr18     576899         829813     NM_005433       YES1
33   chr4   69128964       69372242  NM_001031732     YTHDC1
34   chr4   69128964       69372242     NM_014058  TMPRSS11E
35   chr9  116827704      116943389     NM_001633       AMBP
36   chr9  116827704      116943389     NM_032888    COL27A1
37   chr9  116827704      116943389     NM_138424      KIF12,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12770075       12899133  NM_001080830     PRAMEF12
1    chr1   12770075       12899133  NM_001103170      AADACL3
2    chr1   12770075       12899133  NM_001146344     PRAMEF11
3    chr1   12770075       12899133  NM_001294139      PRAMEF1
5    chr1   12770075       12899133     NM_152290     C1orf158
6   chr10   55687534       55887008  NM_001142770       PCDH15
9   chr11   31193029       31618909  NM_001304274       IMMP1L
10  chr11   31193029       31618909     NM_019040         ELP4
11  chr11   31193029       31618909     NM_181706      DNAJC24
12  chr11   31193029       31618909     NM_181807        DCDC1
13  chr11   48263371       48515702  NM_001004702        OR4C3
14  chr11   48263371       48515702  NM_001004725        OR4S1
15  chr11   48263371       48515702  NM_001004726        OR4X1
16  chr11   48263371       48515702  NM_001004727        OR4X2
17  chr11   48263371       48515702  NM_001005512       OR4A47
18  chr11   48263371       48515702  NM_001005513       OR4C45
19  chr12   71468481       71774236     NM_004616       TSPAN8
20  chr14   21934535       22068033  NM_001005465       OR10G3
21  chr14   21934535       22068033  NM_001163380        RAB2B
22  chr14   21934535       22068033  NM_001303523         TOX4
23  chr14   21934535       22068033     NM_019852       METTL3
25  chr14   21934535       22068033     NR_111966        SALL2
27  chr20   14709350       15117227     NM_080676      MACROD2
28  chr20   14709350       15117227     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28655891       29250295  NM_001130414         APBA2
1   chr15   28655891       29250295  NM_001282468       GOLGA8M
2   chr15   28655891       29250295     NR_026589       WHAMMP2
3   chr15   28655891       29250295     NR_033351       GOLGA8F
4   chr15   28655891       29250295     NR_033353       GOLGA8G
5   chr15   28655891       29250295     NR_036443       HERC2P9
6   chr15   28655891       29250295     NR_036475  LOC100289656
7   chr15   28655891       29250295     NR_037599     PDCD6IPP2
8   chr15   28655891       29250295     NR_039734     MIR4509-3
10  chr15   28655891       29250295     NR_047567     GOLGA6L7P
11  chr16   21530033       21647035  NM_001077180        METTL9
13  chr16   21530033       21647035     NR_002594      SLC7A5P2
14  chr16   21530033       21647035     NR_110930  LOC101927814
15   chr6  131050246      131645713  NM_001135554       EPB41L2
16   chr6  131050246      131645713  NM_001195597         SMLR1
18   chr6  131050246      131645713     NM_016377         AKAP7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143652733      143782168  NM_001123068       PPIAL4G
1    chr1  143652733      143782168     NR_104014     LINC01138
2    chr1  143652733      143782168     NR_106967       MIR6077
3    chr1  143652733      143782168     NR_111930  LOC100132057
4   chr15   28469761       29035898  NM_001282468       GOLGA8M
5   chr15   28469761       29035898     NM_004667         HERC2
6   chr15   28469761       29035898     NR_026589       WHAMMP2
7   chr15   28469761       29035898     NR_033351       GOLGA8F
9   chr15   28469761       29035898     NR_033353       GOLGA8G
11  chr15   28469761       29035898     NR_036443       HERC2P9
12  chr15   28469761       29035898     NR_036475  LOC100289656
13  chr15   28469761       29035898     NR_037599     PDCD6IPP2
14  chr15   28469761       29035898     NR_039734     MIR4509-3
16  chr16   21673315       21776632  NM_001161683          OTOA
19  chr17   14067124       14169184  NM_001007530        CDRT15
20  chr17   14067124       14169184     NM_001303         COX10
21  chr20   14568435       14886314     NM_080676       MACROD2
22  chr20   14568435       14886314     NR_037841   MACROD2-AS1
24  chr20   14568435       14886314     NR_104193   MACROD2-IT1
25   chr9   41587772       41749426     NR_003528       ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10    1511318        1634660     NM_018702      ADARB2
1   chr10    1511318        1634660     NR_033387  ADARB2-AS1
2   chr14   21882124       22063880  NM_001005465      OR10G3
3   chr14   21882124       22063880  NM_001163380       RAB2B
4   chr14   21882124       22063880  NM_001170629        CHD8
5   chr14   21882124       22063880  NM_001303523        TOX4
6   chr14   21882124       22063880     NM_019852      METTL3
9   chr14   21882124       22063880     NR_111966       SALL2
11  chr15   28725648       28904996     NR_033351     GOLGA8F
12  chr15   28725648       28904996     NR_033353     GOLGA8G
13  chr15   28725648       28904996     NR_036443     HERC2P9
14  chr15   28725648       28904996     NR_039734   MIR4509-3
15  chr16   85253373       85445751     NR_038859   LINC00311
16  chr16   85253373       85445751     NR_049816     MIR5093
17  chr19   57539534       57742440  NM_001012729        DUXA
18  chr19   57539534       57742440  NM_001015878       AURKC
20  chr19   57539534       57742440     NM_003417      ZNF264
21  chr19   57539534       57742440     NM_020903       USP29
22  chr19   57539534       57742440     NM_052882        ZIM3
23   chr7    3779853        3886076     NM_152744        SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67710088       67996256  NM_001127384        CTNNA3
2   chr11    7794243        7960143  NM_001003745        OR10A3
3   chr11    7794243        7960143  NM_001004461        OR10A6
4   chr11    7794243        7960143     NM_153444         OR5P2
5   chr11    7794243        7960143     NM_153445         OR5P3
6   chr11    7794243        7960143     NR_027711        OR5E1P
7   chr11    7794243        7960143     NR_036678     LOC283299
8   chr14   21812298       22059786  NM_001005465        OR10G3
9   chr14   21812298       22059786  NM_001163380         RAB2B
10  chr14   21812298       22059786  NM_001170629          CHD8
11  chr14   21812298       22059786  NM_001303523          TOX4
12  chr14   21812298       22059786     NM_007192       SUPT16H
13  chr14   21812298       22059786     NM_019852        METTL3
14  chr14   21812298       22059786     NM_020366       RPGRIP1
17  chr14   21812298       22059786     NR_002916        SNORD8
18  chr14   21812298       22059786     NR_003029        SNORD9
19  chr14   21812298       22059786     NR_111966         SALL2
21  chr16   28432630       28976332     NM_000086          CLN3
23  chr16   28432630       28976332  NM_001042483         NUPR1
24  chr16   28432630       28976332     NM_001054       SULT1A2
25  chr16   28432630       28976332  NM_001145795         SH2B1
27  chr16   28432630       28976332  NM_001199142         EIF3C
29  chr16   28432630       28976332  NM_001286075        ATP2A1
34  chr16   28432630       28976332  NM_001287251        NPIPB9
36  chr16   28432630       28976332  NM_001310136        NPIPB8
37  chr16   28432630       28976332  NM_001317856        EIF3CL
38  chr16   28432630       28976332     NM_001770          CD19
39  chr16   28432630       28976332     NM_003321          TUFM
42  chr16   28432630       28976332     NM_018690         APOBR
43  chr16   28432630       28976332     NM_024816        RABEP2
44  chr16   28432630       28976332     NM_032815      NFATC2IP
45  chr16   28432630       28976332     NM_138414         SGF29
46  chr16   28432630       28976332     NM_145659          IL27
47  chr16   28432630       28976332     NM_148416        ATXN2L
49  chr16   28432630       28976332     NM_177529       SULT1A1
52  chr16   28432630       28976332     NR_039742       MIR4517
53  chr16   28432630       28976332     NR_039872       MIR4721
54  chr16   28432630       28976332     NR_046287    ATP2A1-AS1
55  chr16   28432630       28976332     NR_107058     MIR6862-2
56   chr3  193085361      193206785     NM_032279       ATP13A4
57   chr3  193085361      193206785     NM_198505       ATP13A5
58   chr7   64055089       64168719  NM_001282360        ZNF107
59   chr7   64055089       64168719     NR_077227  LOC100128885
61   chr7   64055089       64168719     NR_106898       MIR6839
62   chr7   69073244       69183056  NM_001127231         AUTS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28796530       29509835  NM_001130414         APBA2
1   chr15   28796530       29509835  NM_001282468       GOLGA8M
2   chr15   28796530       29509835     NM_015307      FAM189A1
3   chr15   28796530       29509835     NR_026589       WHAMMP2
4   chr15   28796530       29509835     NR_036443       HERC2P9
5   chr15   28796530       29509835     NR_036475  LOC100289656
6   chr15   28796530       29509835     NR_037599     PDCD6IPP2
7   chr15   28796530       29509835     NR_047567     GOLGA6L7P
8   chr16   22260724       22377756  NM_001258033        POLR3E
9   chr16   22260724       22377756     NM_001802          CDR2
10  chr16   22260724       22377756     NM_013302         EEF2K
11  chr21   23466144       23983406     NR_038400     LINC00308
12  chr21   23466144       23983406     NR_109959  LOC101927843,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr15   85610821       85871113  NM_001243137        PDE8A
1   chr15   85610821       85871113  NM_001310153     GOLGA6L3
3   chr15   85610821       85871113     NR_049748    LOC642423
4   chr16   29476854       29627830     NR_002556    LOC388242
5   chr16   29476854       29627830     NR_049833    MIR3680-2
6   chr16   29476854       29627830     NR_135305       SMG1P2
8   chr18     593932         772375  NM_001012716       TYMSOS
9   chr18     593932         772375     NM_001071         TYMS
10  chr18     593932         772375  NM_001126123       ENOSF1
11  chr18     593932         772375  NM_001289036        CLUL1
15  chr18     593932         772375     NM_005433         YES1
18  chr19   47805455       48344349     NM_000554          CRX
19  chr19   47805455       48344349  NM_001009813        MEIS3
20  chr19   47805455       48344349  NM_001271749        C5AR2
22  chr19   47805455       48344349  NM_001277075       ZNF541
23  chr19   47805455       48344349  NM_001291296         KPTN
26  chr19   47805455       48344349     NM_001736        C5AR1
27  chr19   47805455       48344349     NM_003009      SELENOW
28  chr19   47805455       48344349     NM_014601         EHD2
29  chr19   47805455       48344349     NM_014681        DHX34
30  chr19   47805455       48344349     NM_015063       SLC8A2
31  chr19   47805455       48344349     NM_015710      GLTSCR2
32  chr19   47805455       48344349     NM_015711      GLTSCR1
34  chr19   47805455       48344349     NM_198479        TPRX1
35  chr19   47805455       48344349     NR_003048      SNORD23
36  chr19   47805455       48344349     NR_038452     NAPA-AS1
37  chr19   47805455       48344349     NR_038457         NAPA
38  chr19   47805455       48344349     NR_132382  GLTSCR2-AS1
39  chr20   14706442       14807568     NM_080676      MACROD2
40  chr20   14706430       15219774  NM_001033087      MACROD2
42  chr20   14706430       15219774     NR_037841  MACROD2-AS1
44  chr20   14784669       15038031     NM_080676      MACROD2
45  chr20   14784669       15038031     NR_037841  MACROD2-AS1
47   chr3    4019385        5369743  NM_001164675        SUMF1
48   chr3    4019385        5369743  NM_001168272        ITPR1
49   chr3    4019385        5369743  NM_001243723       SETMAR
51   chr3    4019385        5369743     NM_003670      BHLHE40
52   chr3    4019385        5369743     NM_014674        EDEM1
53   chr3    4019385        5369743     NM_018184        ARL8B
54   chr3    4019385        5369743     NR_004428         EGOT
55   chr3    4019385        5369743     NR_037903  BHLHE40-AS1
56   chr3    4019385        5369743     NR_039953      MIR4790
57   chr3    4019385        5369743     NR_108075    ITPR1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   85646489       85840384     NM_006982          ALX1
1   chr15   28648738       28850603     NR_033351       GOLGA8F
2   chr15   28648738       28850603     NR_033353       GOLGA8G
3   chr15   28648738       28850603     NR_039734     MIR4509-3
5   chr17   47884411       48170579  NM_001077503          TAC4
6   chr17   47884411       48170579  NM_001199158          KAT7
7   chr17   47884411       48170579  NM_001242791      FLJ45513
8   chr17   47884411       48170579     NM_001934          DLX4
9   chr17   47884411       48170579     NM_002204         ITGA3
10  chr17   47884411       48170579     NM_005220          DLX3
12  chr17   47884411       48170579     NR_038230     LOC284080
13  chr22   17193069       17793272  NM_001037814          GAB4
14  chr22   17193069       17793272  NM_001163079         CECR6
15  chr22   17193069       17793272  NM_001282227         CECR1
17  chr22   17193069       17793272  NM_001289905        IL17RA
18  chr22   17193069       17793272     NM_017829         CECR5
21  chr22   17193069       17793272     NM_175878          XKR3
23  chr22   17193069       17793272     NR_003607       HSFY1P1
24  chr22   17193069       17793272     NR_015352         CECR7
25  chr22   17193069       17793272     NR_024482     CECR5-AS1
26  chr22   17193069       17793272     NR_038398         CECR3
27  chr22   17193069       17793272     NR_103793  LOC100996342
28  chr22   17193069       17793272     NR_134584  LOC101929350
29   chr4   91150086       91292810  NM_001145065        CCSER1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21756839       21887562  NM_001170629      CHD8
1  chr14   21756839       21887562     NM_007192   SUPT16H
2  chr14   21756839       21887562     NM_020366   RPGRIP1
4  chr14   21756839       21887562     NR_002916    SNORD8
5  chr14   21756839       21887562     NR_003029    SNORD9
6   chr6   65563100       65800017  NM_001142800       EYS
7   chr7    8681225        8814101     NM_152745     NXPH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   79719800       79874045     NM_015206      KIAA1024
1   chr16   18305290       18591987  NM_001004060         NOMO2
2   chr16   18305290       18591987  NM_001282511        NPIPA8
3   chr16   18305290       18591987     NR_003569       ABCC6P1
4   chr16   18305290       18591987     NR_036140     MIR3179-1
5   chr16   18305290       18591987     NR_036142     MIR3180-2
6   chr16   18305290       18591987     NR_036144     MIR3180-3
7   chr16   18305290       18591987     NR_037442     MIR3670-1
8   chr16   18305290       18591987     NR_103772  LOC100288162
9   chr16   18305290       18591987     NR_106971     MIR6511A4
10  chr16   18305290       18591987     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72715547       72858672     NM_013381         TRHDE
1   chr14   21679765       21891886  NM_001170629          CHD8
2   chr14   21679765       21891886     NM_007192       SUPT16H
3   chr14   21679765       21891886     NM_020366       RPGRIP1
5   chr14   21679765       21891886     NM_031314        HNRNPC
6   chr14   21679765       21891886     NR_002916        SNORD8
7   chr14   21679765       21891886     NR_003029        SNORD9
8   chr20    8063496        8652901     NM_015192         PLCB1
9   chr20    8063496        8652901     NR_046809     PLCB1-IT1
10   chr3   60278755       60400962  NM_001320899          FHIT
11   chr6  119708594      119911981     NR_046100     LOC285762
12   chr6  119708594      119911981     NR_134600  LOC105377975,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   25967888       26081538     NR_108067     LINC00836
2   chr14   21803056       21905283  NM_001170629          CHD8
3   chr14   21803056       21905283     NM_007192       SUPT16H
4   chr14   21803056       21905283     NM_020366       RPGRIP1
6   chr14   21803056       21905283     NR_002916        SNORD8
7   chr14   21803056       21905283     NR_003029        SNORD9
8   chr18     782981        1238986  NM_001099733       ADCYAP1
10  chr18     782981        1238986     NM_005433          YES1
11   chr4  125308940      125424535     NR_110838  LOC101927087,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245004449      245117003  NM_001312871         COX20
2    chr1  245004449      245117003     NM_004501        HNRNPU
4    chr1  245004449      245117003     NR_132782      SNORA100
5   chr12   85447096       85709956  NM_001079910        LRRIQ1
6   chr12   85447096       85709956     NM_006982          ALX1
7   chr17   14203278       14928609     NM_006041      HS3ST3B1
8   chr17   14203278       14928609     NR_026880      MGC12916
9   chr17   14203278       14928609     NR_135638  LOC101928475
10  chr20   14665546       14782253     NM_080676       MACROD2
11  chr22   17265805       17783067  NM_001037814          GAB4
12  chr22   17265805       17783067  NM_001163079         CECR6
13  chr22   17265805       17783067  NM_001282227         CECR1
15  chr22   17265805       17783067  NM_001289905        IL17RA
16  chr22   17265805       17783067     NM_017829         CECR5
19  chr22   17265805       17783067     NM_175878          XKR3
21  chr22   17265805       17783067     NR_003607       HSFY1P1
22  chr22   17265805       17783067     NR_015352         CECR7
23  chr22   17265805       17783067     NR_024482     CECR5-AS1
24  chr22   17265805       17783067     NR_038398         CECR3
25  chr22   17265805       17783067     NR_103793  LOC100996342
26   chr9  108522282      108789305     NM_018112       TMEM38B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143092923      143286630     NR_110761  LOC102723769
1   chr10   27638233       27818375  NM_001034842        PTCHD3
2   chr10   27638233       27818375  NM_001256411         RAB18
3   chr15   28801809       29174283  NM_001282468       GOLGA8M
4   chr15   28801809       29174283     NR_026589       WHAMMP2
5   chr15   28801809       29174283     NR_036443       HERC2P9
6   chr15   28801809       29174283     NR_036475  LOC100289656
7   chr15   28801809       29174283     NR_037599     PDCD6IPP2
8   chr15   28801809       29174283     NR_047567     GOLGA6L7P
9   chr15   97773379       98105402     NR_110756  LOC101927310
10  chr15   97773379       98105402     NR_120324  LOC101927286
11   chr7   75354086       75463818  NM_001243198          HIP1
12   chr7   75354086       75463818     NM_002991         CCL24
13   chr7   75354086       75463818     NM_006072         CCL26,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21869198       22261504  NM_001001912         OR4E2
1   chr14   21869198       22261504  NM_001005465        OR10G3
2   chr14   21869198       22261504  NM_001005466        OR10G2
3   chr14   21869198       22261504  NM_001163380         RAB2B
4   chr14   21869198       22261504  NM_001170629          CHD8
5   chr14   21869198       22261504  NM_001303523          TOX4
6   chr14   21869198       22261504  NM_001317107         OR4E1
7   chr14   21869198       22261504     NM_019852        METTL3
10  chr14   21869198       22261504     NR_111966         SALL2
12  chr20    2970758        3104591     NM_000490           AVP
13  chr20    2970758        3104591     NM_000915           OXT
14  chr20    2970758        3104591  NM_001267584         UBOX5
15  chr20    2970758        3104591     NM_002836         PTPRA
16  chr20    2970758        3104591     NM_030811        MRPS26
19  chr20    2970758        3104591     NM_178332         GNRH2
20  chr20    2970758        3104591     NR_038395     UBOX5-AS1
21   chr6  119734991      119892309     NR_046100     LOC285762
22   chr6  119734991      119892309     NR_134600  LOC105377975,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18103996       18571487  NM_001004060         NOMO2
1   chr16   18103996       18571487  NM_001282511        NPIPA8
2   chr16   18103996       18571487     NR_036140     MIR3179-1
3   chr16   18103996       18571487     NR_036142     MIR3180-2
4   chr16   18103996       18571487     NR_036144     MIR3180-3
5   chr16   18103996       18571487     NR_037442     MIR3670-1
6   chr16   18103996       18571487     NR_103772  LOC100288162
7   chr16   18103996       18571487     NR_106971     MIR6511A4
8   chr16   18103996       18571487     NR_107060     MIR6770-2
9    chr2  126449357      127791137  NM_001322244  LOC101929926
10   chr2  126449357      127791137     NM_002101          GYPC
11   chr5  104177635      104843835     NR_000039       RAB9BP1
12   chr7   68613257       69387334  NM_001127231         AUTS2
14   chr7   68613257       69387334     NR_108105  LOC100507468,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   19575946       20081300  NM_001142308        MALRD1
1   chr10   19575946       20081300     NR_120646  LOC101928834
2   chr10   68552536       68701338  NM_001127384        CTNNA3
4   chr10   68552536       68701338     NM_178011        LRRTM3
5   chr10   68552536       68701338     NR_111911  LOC101928961
6   chr14   21786374       22031270  NM_001163380         RAB2B
7   chr14   21786374       22031270  NM_001170629          CHD8
8   chr14   21786374       22031270  NM_001303523          TOX4
9   chr14   21786374       22031270     NM_007192       SUPT16H
10  chr14   21786374       22031270     NM_019852        METTL3
11  chr14   21786374       22031270     NM_020366       RPGRIP1
14  chr14   21786374       22031270     NR_002916        SNORD8
15  chr14   21786374       22031270     NR_003029        SNORD9
16  chr14   21786374       22031270     NR_111966         SALL2
18   chr2   97432549       97592261  NM_001122646       FAM178B
20   chr2   97432549       97592261     NM_016466       ANKRD39
22   chr2   97432549       97592261     NM_017623         CNNM3
23   chr2   97432549       97592261     NM_017789        SEMA4C
24   chr2   97432549       97592261     NM_020184         CNNM4
25   chr2   97432549       97592261     NM_144994       ANKRD23
26   chr2   97432549       97592261     NR_036074       MIR3127
27   chr2   97432549       97592261     NR_110209  LOC101927053,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245028739      245166472  NM_001143943        EFCAB2
3    chr1  245028739      245166472     NR_111907  LOC101928068
4   chr11   83539163       83793403  NM_001142699          DLG2
8   chr14   21785757       22117091  NM_001005465        OR10G3
9   chr14   21785757       22117091  NM_001005466        OR10G2
10  chr14   21785757       22117091  NM_001163380         RAB2B
11  chr14   21785757       22117091  NM_001170629          CHD8
12  chr14   21785757       22117091  NM_001303523          TOX4
13  chr14   21785757       22117091     NM_007192       SUPT16H
14  chr14   21785757       22117091     NM_019852        METTL3
15  chr14   21785757       22117091     NM_020366       RPGRIP1
18  chr14   21785757       22117091     NR_002916        SNORD8
19  chr14   21785757       22117091     NR_003029        SNORD9
20  chr14   21785757       22117091     NR_111966         SALL2
22  chr15   87202171       88826127  NM_001007156         NTRK3
26  chr15   87202171       88826127     NM_152336         AGBL1
27  chr15   87202171       88826127     NR_026869     LINC00052
28  chr15   87202171       88826127     NR_038229     NTRK3-AS1
29  chr15   87202171       88826127     NR_135682  LOC105370954
30  chr15   87202171       88826127     NR_135683  LOC102724452
31  chr18   24612599       25094769  NM_001256316         CHST9
32  chr18   24612599       25094769     NR_134589  LOC105372038
33   chr2   51169470       51401888  NM_001330079         NRXN1
36   chr2   51169470       51401888     NR_135237     LOC730100
37   chr7  110555301      110721483  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  244958303      245090728  NM_001312871      COX20
2    chr1  244958303      245090728     NM_004501     HNRNPU
4    chr1  244958303      245090728     NR_132782   SNORA100
5   chr14   21695713       21821880     NM_007192    SUPT16H
6   chr14   21695713       21821880     NM_020366    RPGRIP1
7   chr14   21695713       21821880     NM_031314     HNRNPC
8   chr14   21920330       22093251  NM_001005465     OR10G3
9   chr14   21920330       22093251  NM_001163380      RAB2B
10  chr14   21920330       22093251  NM_001303523       TOX4
11  chr14   21920330       22093251     NM_019852     METTL3
13  chr14   21920330       22093251     NR_111966      SALL2
15  chr15   66911648       67085295     NM_005585      SMAD6
16  chr15   66911648       67085295     NR_110372  LINC01169
17   chr2   50799313       50935942  NM_001330082      NRXN1
18   chr2   50799313       50935942     NR_130470    MIR8485
19   chr3    2302364        2440097  NM_001206955      CNTN4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102452890      102613201     NR_110211         OLFM3
1    chr1  108371261      108484144     NM_006113          VAV3
2    chr1  108371261      108484144     NR_107006       MIR7852
3   chr16   18389327       18570442  NM_001004060         NOMO2
4   chr16   18389327       18570442  NM_001282511        NPIPA8
5   chr16   18389327       18570442     NR_036140     MIR3179-1
6   chr16   18389327       18570442     NR_036142     MIR3180-2
7   chr16   18389327       18570442     NR_036144     MIR3180-3
8   chr16   18389327       18570442     NR_037442     MIR3670-1
9   chr16   18389327       18570442     NR_103772  LOC100288162
10  chr16   18389327       18570442     NR_106971     MIR6511A4
11  chr16   18389327       18570442     NR_107060     MIR6770-2
12   chr4   69156327       69337522  NM_001031732        YTHDC1
13   chr4   69156327       69337522     NM_014058     TMPRSS11E
14   chr6   45080452       45227223  NM_001261823        SUPT3H
15   chr6   45080452       45227223     NR_030313        MIR586,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145352167      145572923  NM_001039888      ANKRD34A
1    chr1  145352167      145572923  NM_001184795        PEX11B
2    chr1  145352167      145572923  NM_001277444         NBPF9
3    chr1  145352167      145572923  NM_001278267        NBPF20
4    chr1  145352167      145572923  NM_001280799       ANKRD35
5    chr1  145352167      145572923  NM_001302371        NBPF10
6    chr1  145352167      145572923  NM_001303040        ITGA10
7    chr1  145352167      145572923  NM_001313972         TXNIP
9    chr1  145352167      145572923     NM_005105         RBM8A
11   chr1  145352167      145572923     NM_032305       POLR3GL
12   chr1  145352167      145572923     NM_145277          HFE2
13   chr1  145352167      145572923     NM_153713         LIX1L
14   chr1  145352167      145572923     NR_002328        GNRHR2
18   chr1  145352167      145572923     NR_104217       NBPF25P
19   chr1  145352167      145572923     NR_125967  LOC101928979
20  chr14   21878674       21998619  NM_001163380         RAB2B
21  chr14   21878674       21998619  NM_001170629          CHD8
22  chr14   21878674       21998619  NM_001303523          TOX4
23  chr14   21878674       21998619     NM_019852        METTL3
26  chr14   21878674       21998619     NR_111966         SALL2
28  chr16   21820982       21975098  NM_001310148        NPIPB4
29  chr16   21820982       21975098     NM_003366        UQCRC2
30  chr16   21820982       21975098     NR_003370        RRN3P1
31   chr2  110197472      110417088  NM_001099289        SH3RF3
32   chr2  110197472      110417088  NM_001321504        SEPT10
34   chr2  110197472      110417088     NM_023016        SOWAHC
35   chr7  110526508      110704339  NM_001244606        IMMP2L
37   chr9  102206465      102409857     NR_109802  LOC101928438,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  131393372      131526870  NM_001048209           NTM
1   chr11  131393372      131526870     NR_110140  LOC101929653
2   chr11  131418016      132584214  NM_001012393         OPCML
3   chr11  131418016      132584214  NM_001048209           NTM
8   chr11  131418016      132584214     NR_046820        NTM-IT
9   chr11  131418016      132584214     NR_126159       NTM-AS1
10  chr16   14818443       15193802  NM_001270767         NTAN1
11  chr16   14818443       15193802  NM_001277323        NPIPA3
13  chr16   14818443       15193802  NM_001277324        NPIPA2
15  chr16   14818443       15193802  NM_001285445        PDXDC1
20  chr16   14818443       15193802  NM_001301064          RRN3
22  chr16   14818443       15193802     NM_006985        NPIPA1
23  chr16   14818443       15193802     NM_014287         NOMO1
24  chr16   14818443       15193802     NR_023387       ABCC6P2
25  chr16   14818443       15193802     NR_036140     MIR3179-1
26  chr16   14818443       15193802     NR_036141     MIR3180-1
27  chr16   14818443       15193802     NR_036142     MIR3180-2
28  chr16   14818443       15193802     NR_103772  LOC100288162
29  chr16   14818443       15193802     NR_106970     MIR6511A3
30  chr16   14818443       15193802     NR_107060     MIR6770-2
31  chr16   14818443       15193802     NR_125434  LOC100505915
32  chr16   14818443       15193802     NR_128713     MIR3670-4
33  chr20   14808331       14914338     NM_080676       MACROD2
34  chr20   14808331       14914338     NR_037841   MACROD2-AS1
36  chr22   19886354       20045963     NM_000754          COMT
39  chr22   19886354       20045963  NM_001282512        TXNRD2
40  chr22   19886354       20045963  NM_001283116        TANGO2
43  chr22   19886354       20045963     NM_001670         ARVCF
46  chr22   19886354       20045963     NR_029706        MIR185
47  chr22   19886354       20045963     NR_039918       MIR4761,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   68076746       68343737  NM_001127384      CTNNA3
2   chr17    1170471        1437462  NM_001080779       MYO1C
4   chr17    1170471        1437462  NM_001164405      BHLHA9
5   chr17    1170471        1437462     NM_005206         CRK
6   chr17    1170471        1437462     NM_006224      PITPNA
7   chr17    1170471        1437462     NM_006761       YWHAE
8   chr17    1170471        1437462     NM_016532      INPP5K
10  chr17    1170471        1437462     NM_172367       TUSC5
11  chr17    1170471        1437462     NR_028514  PITPNA-AS1
12   chr9    7978981        8457564     NM_002839       PTPRD
14   chr9   16829105       17164647  NM_001114395       CNTLN
16   chr9   16829105       17164647     NM_017637        BNC2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143593971      143904492  NM_001123068       PPIAL4G
1   chr1  143593971      143904492  NM_001287385        FAM72C
2   chr1  143593971      143904492  NM_001345942        FAM72D
5   chr1  143593971      143904492     NR_104014     LINC01138
6   chr1  143593971      143904492     NR_106967       MIR6077
7   chr1  143593971      143904492     NR_111930  LOC100132057
9   chr6  146445536      146552813  NM_001278064          GRM1
11  chr9  102048300      102204260     NR_102270          NAMA,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48300457       48440842  NM_001004702         OR4C3
1   chr11   48300457       48440842  NM_001004725         OR4S1
2   chr11   48300457       48440842  NM_001005513        OR4C45
3   chr11   95848607       96726062  NM_001261833          JRKL
4   chr11   95848607       96726062  NM_001318737        CCDC82
6   chr11   95848607       96726062     NM_032427         MAML2
7   chr11   95848607       96726062     NR_036125      MIR1260B
8   chr11   95848607       96726062     NR_047481      JRKL-AS1
9   chr11   95848607       96726062     NR_135097  LOC105369443
10  chr16   18472870       18765957  NM_001004060         NOMO2
11  chr16   18472870       18765957     NR_003569       ABCC6P1
12  chr16   18472870       18765957     NR_036140     MIR3179-1
13  chr16   18472870       18765957     NR_036142     MIR3180-2
14  chr16   18472870       18765957     NR_036144     MIR3180-3
15  chr16   18472870       18765957     NR_037442     MIR3670-1
16  chr16   18472870       18765957     NR_107060     MIR6770-2
17  chr22   19942352       21334700     NM_000185      SERPIND1
18  chr22   19942352       21334700     NM_000754          COMT
19  chr22   19942352       21334700  NM_001018060         AIFM3
23  chr22   19942352       21334700  NM_001190326         DGCR8
24  chr22   19942352       21334700  NM_001242313      TMEM191B
25  chr22   19942352       21334700  NM_001243537       CCDC188
26  chr22   19942352       21334700  NM_001256523         ZNF74
27  chr22   19942352       21334700  NM_001278639        RANBP1
30  chr22   19942352       21334700  NM_001283116        TANGO2
31  chr22   19942352       21334700  NM_001293236         MED15
35  chr22   19942352       21334700     NM_001670         ARVCF
36  chr22   19942352       21334700     NM_004782        SNAP29
37  chr22   19942352       21334700     NM_005207          CRKL
39  chr22   19942352       21334700     NM_013373        ZDHHC8
..    ...        ...            ...           ...           ...
44  chr22   19942352       21334700     NM_058004         PI4KA
45  chr22   19942352       21334700     NM_153334        SCARF2
46  chr22   19942352       21334700     NR_003563       PI4KAP1
47  chr22   19942352       21334700     NR_024592     POM121L4P
48  chr22   19942352       21334700     NR_026815      TMEM191A
49  chr22   19942352       21334700     NR_026919     LINC00896
50  chr22   19942352       21334700     NR_029706        MIR185
51  chr22   19942352       21334700     NR_031618       MIR1286
52  chr22   19942352       21334700     NR_031706       MIR1306
53  chr22   19942352       21334700     NR_033825        KLHL22
54  chr22   19942352       21334700     NR_037412       MIR3618
55  chr22   19942352       21334700     NR_038460     LOC284865
56  chr22   19942352       21334700     NR_039918       MIR4761
57  chr22   19942352       21334700     NR_106874       MIR6816
58  chr22   19942352       21334700     NR_110537  LOC101928891
59  chr22   19942352       21334700     NR_136560       FAM230A
60  chr22   19942352       21334700     NR_136569     LOC729461
61  chr22   19942352       21334700     NR_136572  LOC101927859
62   chr4   69240042       69444054     NM_001077       UGT2B17
63   chr4   69240042       69444054     NM_014058     TMPRSS11E
64   chr4  128324621      128737737  NM_001317381        HSPA4L
67   chr4  128324621      128737737  NM_001318467      SLC25A31
68   chr4  128324621      128737737     NM_015693          INTU
69   chr4  169212546      169396896  NM_001012967        DDX60L
71   chr4  169212546      169396896     NM_017631         DDX60
72   chr7   16672412       16984219  NM_001159767          BZW2
73   chr7   16672412       16984219     NM_006408          AGR2
74   chr7   16672412       16984219     NM_014399       TSPAN13
75   chr7   16672412       16984219     NM_020319        ANKMY2
76   chr7   16672412       16984219     NM_176813          AGR3

[64 rows x 5 columns],   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr2  153115660      153257383     NM_052905      FMNL2
1  chr5   17687094       18003020     NR_134286  LOC646241
3  chr7   75035794       75171204  NM_001099415    POM121C
4  chr7   75035794       75171204  NM_001243198       HIP1
5  chr7   75035794       75171204  NM_001306141     SPDYE5
6  chr7   75035794       75171204     NR_028059     PMS2P3
7  chr7   75035794       75171204     NR_033322    NSUN5P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28706906       28880553     NR_033351       GOLGA8F
1   chr15   28706906       28880553     NR_033353       GOLGA8G
2   chr15   28706906       28880553     NR_039734     MIR4509-3
3   chr22   17211951       17639848  NM_001037814          GAB4
4   chr22   17211951       17639848  NM_001163079         CECR6
5   chr22   17211951       17639848  NM_001289905        IL17RA
6   chr22   17211951       17639848     NM_017829         CECR5
9   chr22   17211951       17639848     NM_175878          XKR3
10  chr22   17211951       17639848     NR_003607       HSFY1P1
11  chr22   17211951       17639848     NR_015352         CECR7
12  chr22   17211951       17639848     NR_103793  LOC100996342
13  chr22   17211951       17639848     NR_134584  LOC101929350
14   chr5     102036         588445  NM_001080478       LRRC14B
15   chr5     102036         588445  NM_001242412          AHRR
16   chr5     102036         588445  NM_001284351        SLC9A3
17   chr5     102036         588445     NM_004168          SDHA
18   chr5     102036         588445     NM_007277         EXOC3
19   chr5     102036         588445     NM_013232         PDCD6
20   chr5     102036         588445     NM_052909      PLEKHG4B
21   chr5     102036         588445     NM_145265       CCDC127
22   chr5     102036         588445     NR_024158        PP7080
23   chr5     102036         588445     NR_039661       MIR4456
25   chr5     102036         588445     NR_104613         HRAT5
26   chr5     102036         588445     NR_125375  LOC100288152
27   chr5     102036         588445     NR_126522     EXOC3-AS1
28   chr7   88911438       89260280     NM_181646       ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   20882672       20995847  NM_001145946       SLCO1C1
2   chr12   20882672       20995847     NM_019844       SLCO1B3
3   chr14   21878817       22140920  NM_001001912         OR4E2
4   chr14   21878817       22140920  NM_001005465        OR10G3
5   chr14   21878817       22140920  NM_001005466        OR10G2
6   chr14   21878817       22140920  NM_001163380         RAB2B
7   chr14   21878817       22140920  NM_001170629          CHD8
8   chr14   21878817       22140920  NM_001303523          TOX4
9   chr14   21878817       22140920  NM_001317107         OR4E1
10  chr14   21878817       22140920     NM_019852        METTL3
13  chr14   21878817       22140920     NR_111966         SALL2
15  chr15   82720992       84391638  NM_001007122          FSD2
16  chr15   82720992       84391638  NM_001079533         CPEB1
17  chr15   82720992       84391638  NM_001080435         WHAMM
18  chr15   82720992       84391638  NM_001160113      C15orf40
22  chr15   82720992       84391638  NM_001164465     GOLGA6L10
24  chr15   82720992       84391638  NM_001291420      GOLGA6L9
26  chr15   82720992       84391638  NM_001301206          BNC1
28  chr15   82720992       84391638  NM_001324186        SH3GL3
30  chr15   82720992       84391638  NM_001330385        TM6SF1
32  chr15   82720992       84391638     NM_004644         AP3B2
33  chr15   82720992       84391638     NM_004839        HOMER2
34  chr15   82720992       84391638     NM_016073       HDGFRP3
36  chr15   82720992       84391638     NM_025238         BTBD1
38  chr15   82720992       84391638     NM_031452      FAM103A1
41  chr15   82720992       84391638     NM_207517      ADAMTSL3
42  chr15   82720992       84391638     NR_003011      SCARNA15
43  chr15   82720992       84391638     NR_004847      UBE2Q2P2
44  chr15   82720992       84391638     NR_026811     GOLGA2P10
47  chr15   82720992       84391638     NR_034139     LOC338963
48  chr15   82720992       84391638     NR_036446      ACTG1P17
49  chr15   82720992       84391638     NR_039740       MIR4515
50  chr15   82720992       84391638     NR_045529     ADAMTS7P1
51  chr15   82720992       84391638     NR_046096     CPEB1-AS1
52  chr15   82720992       84391638     NR_102747     LOC727751
54  chr15   82720992       84391638     NR_110098        SNHG21
56  chr15   82720992       84391638     NR_111943         RPS17
60  chr15   82720992       84391638     NR_111962    GOLGA6L17P
61  chr15   82720992       84391638     NR_120378  LOC102724034
62   chr7    3252186        3361872     NM_152744          SDK1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21902278       22012010  NM_001163380     RAB2B
1  chr14   21902278       22012010  NM_001303523      TOX4
2  chr14   21902278       22012010     NM_019852    METTL3
3  chr14   21902278       22012010     NM_020920      CHD8
5  chr14   21902278       22012010     NR_111966     SALL2
7  chr16   21774854       21935385  NM_001310148    NPIPB4
8  chr16   21774854       21935385     NR_003370    RRN3P1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12844576       12983532  NM_001009611      PRAMEF4
1    chr1   12844576       12983532  NM_001012276      PRAMEF8
2    chr1   12844576       12983532  NM_001013631     HNRNPCL1
3    chr1   12844576       12983532  NM_001146181     HNRNPCL3
4    chr1   12844576       12983532  NM_001146344     PRAMEF11
5    chr1   12844576       12983532  NM_001294139      PRAMEF1
6    chr1   12844576       12983532  NM_001302551     HNRNPCL4
8    chr1   12844576       12983532     NM_023014      PRAMEF2
9   chr14   21911255       22040229  NM_001005465       OR10G3
10  chr14   21911255       22040229  NM_001163380        RAB2B
11  chr14   21911255       22040229  NM_001303523         TOX4
12  chr14   21911255       22040229     NM_019852       METTL3
14  chr14   21911255       22040229     NR_111966        SALL2
16  chr15   28488817       28592366     NM_004667        HERC2
17  chr20   14706002       14888086     NM_080676      MACROD2
18  chr20   14706002       14888086     NR_037841  MACROD2-AS1
20   chr4   66506573       66607842  NM_001281766        EPHA5
23   chr4   66506573       66607842     NR_034138    EPHA5-AS1
24   chr4   69294732       69615746     NM_001076      UGT2B15
25   chr4   69294732       69615746     NM_001077      UGT2B17
26   chr4   69294732       69615746     NM_014058    TMPRSS11E
27   chr9   41874937       41995504     NR_003670       FGF7P3
28   chr9   41874937       41995504     NR_015363        GLIDR,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   72679822       72811680     NM_013381     TRHDE
1   chr13  113042644      113165495  NM_001286278   TUBGCP3
3   chr13  113042644      113165495     NM_145248    SPACA7
4   chr14   21866903       22562358  NM_001001912     OR4E2
5   chr14   21866903       22562358  NM_001005465    OR10G3
6   chr14   21866903       22562358  NM_001005466    OR10G2
7   chr14   21866903       22562358  NM_001163380     RAB2B
8   chr14   21866903       22562358  NM_001170629      CHD8
9   chr14   21866903       22562358  NM_001303523      TOX4
10  chr14   21866903       22562358  NM_001317107     OR4E1
11  chr14   21866903       22562358     NM_019852    METTL3
14  chr14   21866903       22562358     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21848990       21959840  NM_001163380         RAB2B
1   chr14   21848990       21959840  NM_001170629          CHD8
2   chr14   21848990       21959840  NM_001303523          TOX4
3   chr14   21848990       21959840     NM_007192       SUPT16H
6   chr14   21848990       21959840     NR_002916        SNORD8
7   chr14   21848990       21959840     NR_003029        SNORD9
8   chr16    9195516        9553779     NM_014117      C16orf72
9   chr16    9195516        9553779     NR_126349     LINC01195
10  chr16    9195516        9553779     NR_126397     LINC01177
11  chr16    9195516        9553779     NR_135195  LOC101927009
12   chr2   63208247       63321437  NM_001142614         EHBP1
14   chr2   63208247       63321437  NM_001199770          OTX1
16   chr2   63208247       63321437     NR_027069  LOC100132215
19   chr7   56969811       57161090     NR_036246     MIR4283-1
20   chr7  109595172      109705035     NR_003024       EIF3IP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16366265       16535279  NM_001004067         NOMO3
1   chr16   16366265       16535279  NM_001282511        NPIPA8
2   chr16   16366265       16535279     NR_036140     MIR3179-1
3   chr16   16366265       16535279     NR_036141     MIR3180-1
4   chr16   16366265       16535279     NR_036142     MIR3180-2
5   chr16   16366265       16535279     NR_036447        PKD1P1
6   chr16   16366265       16535279     NR_103772  LOC100288162
7   chr16   16366265       16535279     NR_106766     MIR6511A1
8   chr16   16366265       16535279     NR_106971     MIR6511A4
9   chr16   16366265       16535279     NR_107060     MIR6770-2
10  chr16   16366265       16535279     NR_128713     MIR3670-4,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21767284       21965534  NM_001163380     RAB2B
1  chr14   21767284       21965534  NM_001170629      CHD8
2  chr14   21767284       21965534  NM_001303523      TOX4
3  chr14   21767284       21965534     NM_007192   SUPT16H
4  chr14   21767284       21965534     NM_020366   RPGRIP1
7  chr14   21767284       21965534     NR_002916    SNORD8
8  chr14   21767284       21965534     NR_003029    SNORD9
9  chr14   27040645       27149728     NM_002515     NOVA1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81472105       81732325  NM_001278495        NUTM2B
1   chr10   81472105       81732325     NM_003019         SFTPD
2   chr10   81472105       81732325     NR_002724         MBL1P
3   chr10   81472105       81732325     NR_029407     LOC642361
4   chr10   81472105       81732325     NR_033857       BMS1P21
5   chr10   81472105       81732325     NR_120611    NUTM2B-AS1
8   chr11    7849031        8018057  NM_001003745        OR10A3
9   chr11    7849031        8018057  NM_001004461        OR10A6
10  chr11    7849031        8018057     NM_003754         EIF3F
11  chr11    7849031        8018057     NM_176821        NLRP10
12  chr11    7849031        8018057     NR_027711        OR5E1P
13  chr11    7849031        8018057     NR_036678     LOC283299
14  chr11   48422613       48600323  NM_001005512        OR4A47
15  chr13   63167591       63408660     NR_047029     LINC00448
18  chr14   26964713       27774994     NM_002515         NOVA1
20  chr14   26964713       27774994     NR_036193       MIR4307
21  chr14   26964713       27774994     NR_110033  LOC101927062
22  chr14   26964713       27774994     NR_110041     MIR4307HG
23  chr14   26964713       27774994     NR_110556  LOC102724890
24  chr14   37949874       38129897  NM_001195296        MIPOL1
25  chr14   37949874       38129897  NM_001310135          TTC6
26  chr14   37949874       38129897     NM_004496         FOXA1
27  chr16   21473563       21600128     NR_002594      SLC7A5P2
28  chr16   21473563       21600128     NR_027155        SMG1P3
29  chr16   21473563       21600128     NR_049833     MIR3680-2
30   chr2   49095630       52529797  NM_001320157         NRXN1
36   chr2   49095630       52529797     NM_181446          FSHR
37   chr2   49095630       52529797     NR_107011      MIR548BA
38   chr2   49095630       52529797     NR_130470       MIR8485
39   chr2   49095630       52529797     NR_135237     LOC730100
40   chr2  186529505      186631614     NM_173651         FSIP2
41   chr2  186529505      186631614     NR_110214  LOC101927196
44   chr9   41518017       41906197     NR_003528       ZNF658B
45   chr9   41518017       41906197     NR_026803       FAM74A1
46   chr9   41505797       41623837  NM_001113541     SPATA31A5
47   chr9   41505797       41623837     NM_015667     SPATA31A7
48   chr9   41505797       41623837     NR_003528       ZNF658B
49   chr9   41505797       41623837     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2  186312208      186695734     NM_173651         FSIP2
1    chr2  186312208      186695734     NR_110214  LOC101927196
4    chr2  186312208      186695734     NR_144453     FSIP2-AS1
6   chr20   14601728       14774897     NM_080676       MACROD2
7   chr20   14601728       14774897     NR_104193   MACROD2-IT1
8    chr4    8979511       10297310     NM_000798          DRD5
9    chr4    8979511       10297310  NM_001001290        SLC2A9
10   chr4    8979511       10297310  NM_001040448       DEFB131
11   chr4    8979511       10297310  NM_001242326      USP17L25
19   chr4    8979511       10297310  NM_001256852      USP17L10
20   chr4    8979511       10297310  NM_001256853      USP17L12
22   chr4    8979511       10297310  NM_001256854      USP17L11
25   chr4    8979511       10297310  NM_001256855      USP17L13
26   chr4    8979511       10297310  NM_001256857      USP17L17
27   chr4    8979511       10297310  NM_001256860      USP17L19
28   chr4    8979511       10297310  NM_001256861      USP17L20
29   chr4    8979511       10297310  NM_001256894      USP17L15
30   chr4    8979511       10297310     NM_005112          WDR1
32   chr4    8979511       10297310     NR_027279      USP17L6P
33   chr4    8979511       10297310     NR_031688      MIR548I2
34   chr4    8979511       10297310     NR_036090       MIR3138
35   chr4    8979511       10297310     NR_046416      USP17L9P
36   chr6    1828581        2019979  NM_001253846          GMDS
38   chr7    4146245        4269096  NM_001079653          SDK1
40   chr7   64039559       64408818  NM_001160183        ZNF138
41   chr7   64039559       64408818  NM_001282360        ZNF107
42   chr7   64039559       64408818     NM_021148        ZNF273
43   chr7   64039559       64408818     NR_033245     LOC641746
45   chr7   64039559       64408818     NR_077227  LOC100128885
47   chr7   64039559       64408818     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   14805487       15080799     NM_080676       MACROD2
1   chr20   14805487       15080799     NR_037841   MACROD2-AS1
3   chr21   23434406       23720199     NR_038400     LINC00308
4   chr21   23434406       23720199     NR_109959  LOC101927843
5   chr22   19043983       19562202  NM_001035247         UFD1L
6   chr22   19043983       19562202  NM_001166242      C22orf39
7   chr22   19043983       19562202  NM_001178010         CDC45
8   chr22   19043983       19562202  NM_001184781         DGCR2
9   chr22   19043983       19562202  NM_001256534       SLC25A1
10  chr22   19043983       19562202  NM_001318151        MRPL40
12  chr22   19043983       19562202     NM_001835        CLTCL1
13  chr22   19043983       19562202     NM_003277         CLDN5
14  chr22   19043983       19562202     NM_003325          HIRA
16  chr22   19043983       19562202     NM_005315          GSC2
18  chr22   19043983       19562202     NM_022719        DGCR14
19  chr22   19043983       19562202     NM_053006         TSSK2
21  chr22   19043983       19562202     NR_024381     LINC00895
22  chr22   19043983       19562202     NR_103767     LINC01311
23   chr3  192361829      192473514     NM_004113         FGF12,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67730275       67909161  NM_001127384        CTNNA3
2   chr14   38206559       38360989  NM_001310135          TTC6
3   chr17   14097725       14207961  NM_001007530        CDRT15
4   chr17   14097725       14207961     NM_001303         COX10
5   chr17   14097725       14207961     NM_006041      HS3ST3B1
6   chr17   14097725       14207961     NR_026880      MGC12916
7   chr18   35113729       35316383     NM_020180         CELF4
8   chr18   35113729       35316383     NR_036202       MIR4318
9    chr2  110136325      110261383  NM_001099289        SH3RF3
10   chr2  186266612      187272809     NM_173651         FSIP2
11   chr2  186266612      187272809     NR_110214  LOC101927196
14   chr2  186266612      187272809     NR_110218     LINC01473
15   chr2  186266612      187272809     NR_144453     FSIP2-AS1
17   chr7   18358754       18474351  NM_001204144         HDAC9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145293919      146712040  NM_001012758        NUDT17
1    chr1  145293919      146712040  NM_001039888      ANKRD34A
2    chr1  145293919      146712040  NM_001097612        GPR89A
3    chr1  145293919      146712040  NM_001101663        NBPF11
4    chr1  145293919      146712040  NM_001144829          FMO5
5    chr1  145293919      146712040  NM_001184795        PEX11B
6    chr1  145293919      146712040  NM_001201325         PDZK1
7    chr1  145293919      146712040  NM_001277444         NBPF9
8    chr1  145293919      146712040  NM_001278141        NBPF12
9    chr1  145293919      146712040  NM_001278267        NBPF20
10   chr1  145293919      146712040  NM_001280799       ANKRD35
11   chr1  145293919      146712040  NM_001302371        NBPF10
12   chr1  145293919      146712040  NM_001303040        ITGA10
13   chr1  145293919      146712040  NM_001303456        POLR3C
14   chr1  145293919      146712040  NM_001313972         TXNIP
17   chr1  145293919      146712040     NM_005105         RBM8A
18   chr1  145293919      146712040     NM_005399        PRKAB2
19   chr1  145293919      146712040     NM_006099         PIAS3
22   chr1  145293919      146712040     NM_007053         CD160
23   chr1  145293919      146712040     NM_014455        RNF115
24   chr1  145293919      146712040     NM_032305       POLR3GL
25   chr1  145293919      146712040     NM_145277          HFE2
26   chr1  145293919      146712040     NM_153713         LIX1L
27   chr1  145293919      146712040     NR_002305       PDIA3P1
28   chr1  145293919      146712040     NR_002328        GNRHR2
29   chr1  145293919      146712040     NR_024442     LOC728989
31   chr1  145293919      146712040     NR_103466       NBPF13P
34   chr1  145293919      146712040     NR_104217       NBPF25P
36   chr1  145293919      146712040     NR_106794       MIR6736
38   chr1  145293919      146712040     NR_111936       PDZK1P1
39   chr1  145293919      146712040     NR_121645       RNVU1-8
40   chr1  145293919      146712040     NR_125967  LOC101928979
41   chr1  145293919      146712040     NR_135559  LOC100505824
42  chr15   28656540       29290694  NM_001130414         APBA2
43  chr15   28656540       29290694  NM_001282468       GOLGA8M
44  chr15   28656540       29290694     NR_026589       WHAMMP2
45  chr15   28656540       29290694     NR_033351       GOLGA8F
46  chr15   28656540       29290694     NR_033353       GOLGA8G
47  chr15   28656540       29290694     NR_036443       HERC2P9
48  chr15   28656540       29290694     NR_036475  LOC100289656
49  chr15   28656540       29290694     NR_037599     PDCD6IPP2
50  chr15   28656540       29290694     NR_039734     MIR4509-3
52  chr15   28656540       29290694     NR_047567     GOLGA6L7P
53  chr15   30270118       30738256  NM_001282472       GOLGA8J
54  chr15   30270118       30738256  NM_001282484       GOLGA8R
55  chr15   30270118       30738256     NM_139320      CHRFAM7A
56  chr15   30270118       30738256     NR_026771  DKFZP434L187
57  chr15   30270118       30738256     NR_026859        ULK4P3
58  chr15   30270118       30738256     NR_033933       GOLGA8T
59  chr22   15702585       17020384  NM_001005239        OR11H1
60  chr22   15702585       17020384  NM_001136213         POTEH
61  chr22   15702585       17020384     NR_046571     POTEH-AS1
62  chr22   15702585       17020384     NR_073459       BMS1P18
63  chr22   15702585       17020384     NR_122113        DUXAP8
64  chr22   15702585       17020384     NR_132385     LINC01297
65  chr22   15702585       17020384     NR_133911       BMS1P22,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  143755658      143926973  NM_001123068   PPIAL4G
1  chr1  143755658      143926973  NM_001287385    FAM72C
2  chr1  143755658      143926973  NM_001345942    FAM72D
7  chr8    8372867        8616145     NM_194284    CLDN23
8  chr9   28609379       28740025  NM_001258282    LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143696309      143903283  NM_001123068       PPIAL4G
1    chr1  143696309      143903283  NM_001287385        FAM72C
2    chr1  143696309      143903283  NM_001345942        FAM72D
5    chr1  143696309      143903283     NR_104014     LINC01138
6    chr1  143696309      143903283     NR_111930  LOC100132057
8   chr10   81479300       81948977  NM_001012973         PLAC9
9   chr10   81479300       81948977  NM_001270367       TMEM254
12  chr10   81479300       81948977  NM_001278407        ANXA11
15  chr10   81479300       81948977     NM_003019         SFTPD
17  chr10   81479300       81948977     NR_002724         MBL1P
18  chr10   81479300       81948977     NR_027431   TMEM254-AS1
19  chr10   81479300       81948977     NR_029407     LOC642361
20  chr10   81479300       81948977     NR_033857       BMS1P21
21  chr10   81479300       81948977     NR_120611    NUTM2B-AS1
25  chr13   54699719       54937168     NR_031628       MIR1297
26  chr13   54699719       54937168     NR_108062     LINC00458
28  chr14   21758978       21876994  NM_001170629          CHD8
29  chr14   21758978       21876994     NM_007192       SUPT16H
30  chr14   21758978       21876994     NM_020366       RPGRIP1
32  chr14   21758978       21876994     NR_002916        SNORD8
33  chr14   21758978       21876994     NR_003029        SNORD9
34  chr16   21538177       21667314  NM_001077180        METTL9
36  chr16   21538177       21667314     NM_005849         IGSF6
37  chr16   21538177       21667314     NR_110930  LOC101927814
38   chr7  110541340      110716337  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21824715       22000531  NM_001163380         RAB2B
1   chr14   21824715       22000531  NM_001170629          CHD8
2   chr14   21824715       22000531  NM_001303523          TOX4
3   chr14   21824715       22000531     NM_007192       SUPT16H
4   chr14   21824715       22000531     NM_019852        METTL3
7   chr14   21824715       22000531     NR_002916        SNORD8
8   chr14   21824715       22000531     NR_003029        SNORD9
9   chr14   21824715       22000531     NR_111966         SALL2
11   chr9   41887023       42031025     NR_003670        FGF7P3
12   chr9   41887023       42031025     NR_015363         GLIDR
15   chr9   41887023       42031025     NR_126048  LOC102724238
16   chr9   41887023       42031025     NR_126049     LOC554249
17   chr9   44313913       44968516     NR_121564  LOC101927827
18   chr9   44313913       44968516     NR_126050  LOC103908605,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21860442       22005635  NM_001163380     RAB2B
1  chr14   21860442       22005635  NM_001170629      CHD8
2  chr14   21860442       22005635  NM_001303523      TOX4
3  chr14   21860442       22005635     NM_019852    METTL3
6  chr14   21860442       22005635     NR_002916    SNORD8
7  chr14   21860442       22005635     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89141704       89424675  NM_001143837          NOX4
5   chr11   89141704       89424675     NM_153696        FOLH1B
7   chr12   27188232       27343934  NM_001080406      C12orf71
8   chr14   21839194       22037957  NM_001005465        OR10G3
9   chr14   21839194       22037957  NM_001163380         RAB2B
10  chr14   21839194       22037957  NM_001170629          CHD8
11  chr14   21839194       22037957  NM_001303523          TOX4
12  chr14   21839194       22037957     NM_007192       SUPT16H
13  chr14   21839194       22037957     NM_019852        METTL3
16  chr14   21839194       22037957     NR_002916        SNORD8
17  chr14   21839194       22037957     NR_003029        SNORD9
18  chr14   21839194       22037957     NR_111966         SALL2
20   chr5   20404184       20540784  NM_001291956         CDH18
21   chr7   21422577       21573993  NM_001326542           SP4
22   chr7   21422577       21573993     NR_031594       MIR1183
24   chr7  133231826      133679797     NM_021807         EXOC4
25   chr7  133231826      133679797     NR_120513  LOC101928861,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   21859009       21973247  NM_001163380       RAB2B
1   chr14   21859009       21973247  NM_001170629        CHD8
2   chr14   21859009       21973247  NM_001303523        TOX4
3   chr14   21859009       21973247     NM_019852      METTL3
6   chr14   21859009       21973247     NR_002916      SNORD8
7   chr14   21859009       21973247     NR_003029      SNORD9
8    chr5      95272         202973  NM_001080478     LRRC14B
9    chr5      95272         202973     NM_052909    PLEKHG4B
10   chr5   63825116       64160658  NM_001029875      RGS7BP
11   chr5   63825116       64160658  NM_001164442     FAM159B
12   chr5   63825116       64160658  NM_001297645       CWC27
15   chr5   63825116       64160658     NM_173829    SREK1IP1
17   chr8     509568        1134129  NM_001303100      ERICH1
18   chr8     509568        1134129  NM_001346810      DLGAP2
20   chr8     509568        1134129     NR_073397  ERICH1-AS1
21   chr8     509568        1134129     NR_134292   LOC401442,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   88968379       89091721  NM_001099338        NUTM2A
1   chr10   88968379       89091721     NR_024397    NUTM2A-AS1
2   chr14   21603424       21705190  NM_001004731        OR5AU1
3   chr14   21603424       21705190     NM_031314        HNRNPC
4   chr14   21603424       21705190     NR_038970     LINC00641
6   chr15   20990996       21348750  NM_001277303        POTEB2
7   chr15   20990996       21348750     NM_207355        POTEB3
8   chr15   20990996       21348750     NR_028506         NF1P2
9   chr15   20990996       21348750     NR_036062     MIR3118-2
10  chr15   20990996       21348750     NR_040094     LINC01193
11  chr15   20990996       21348750     NR_049895     MIR5701-2
13  chr20   14761996       15090163     NM_080676       MACROD2
14  chr20   14761996       15090163     NR_037841   MACROD2-AS1
16  chr22   20098579       20202272  NM_001190326         DGCR8
17  chr22   20098579       20202272  NM_001243537       CCDC188
18  chr22   20098579       20202272  NM_001278639        RANBP1
21  chr22   20098579       20202272     NM_013373        ZDHHC8
22  chr22   20098579       20202272     NM_022727        TRMT2A
23  chr22   20098579       20202272     NR_026919     LINC00896
24  chr22   20098579       20202272     NR_038460     LOC284865
25  chr22   20098579       20202272     NR_106874       MIR6816
26  chr22   20568976       21087195  NM_001256523         ZNF74
27  chr22   20568976       21087195  NM_001293236         MED15
29  chr22   20568976       21087195     NM_058004         PI4KA
30  chr22   20568976       21087195     NM_153334        SCARF2
31  chr22   20568976       21087195     NR_024592     POM121L4P
32  chr22   20568976       21087195     NR_026815      TMEM191A
33  chr22   20568976       21087195     NR_033825        KLHL22
34  chr22   20568976       21087195     NR_136569     LOC729461
35  chr22   20568976       21087195     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21826989       21943696  NM_001163380      RAB2B
1   chr14   21826989       21943696  NM_001170629       CHD8
2   chr14   21826989       21943696     NM_007192    SUPT16H
5   chr14   21826989       21943696     NR_002916     SNORD8
6   chr14   21826989       21943696     NR_003029     SNORD9
7   chr15   30304217       30437467  NM_001282472    GOLGA8J
8   chr15   30304217       30437467     NR_026859     ULK4P3
9   chr15   30304217       30437467     NR_033933    GOLGA8T
10   chr4  169267987      169502378  NM_001012967     DDX60L
11   chr4  169267987      169502378  NM_001166108      PALLD
13   chr8    7003413        7120120     NR_027000  LINC00965,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   88999262       89480509  NM_001178118        MINPP1
1   chr10   88999262       89480509     NM_004670        PAPSS2
3   chr10   88999262       89480509     NR_024397    NUTM2A-AS1
4   chr10   88999262       89480509     NR_029408     LINC00863
5   chr10   88999262       89480509     NR_039825       MIR4678
6   chr10   88999262       89480509     NR_046091     LINC00864
7   chr10   88999262       89480509     NR_075100        NUTM2D
9   chr11   30186008       30304752     NM_000510          FSHB
10  chr16   16308566       17048687  NM_001004067         NOMO3
11  chr16   16308566       17048687  NM_001079528         ABCC6
13  chr16   16308566       17048687  NM_001282511        NPIPA8
14  chr16   16308566       17048687     NR_036140     MIR3179-1
15  chr16   16308566       17048687     NR_036141     MIR3180-1
16  chr16   16308566       17048687     NR_036142     MIR3180-2
17  chr16   16308566       17048687     NR_036447        PKD1P1
18  chr16   16308566       17048687     NR_103772  LOC100288162
19  chr16   16308566       17048687     NR_106766     MIR6511A1
20  chr16   16308566       17048687     NR_106971     MIR6511A4
21  chr16   16308566       17048687     NR_107060     MIR6770-2
22  chr16   16308566       17048687     NR_128713     MIR3670-4
23  chr20    9081219        9242241  NM_001172646         PLCB4
25   chr3  162888646      163012150     NR_033945     LINC01192
26   chr7   75828991       76161343  NM_001102594          DTX2
28   chr7   75828991       76161343  NM_001110199         SRRM3
29   chr7   75828991       76161343  NM_001110354           ZP3
30   chr7   75828991       76161343     NM_001540         HSPB1
32   chr7   75828991       76161343     NM_012479         YWHAG
33   chr7   75828991       76161343     NM_030570         UPK3B
34   chr7   75828991       76161343     NM_080744         SSC4D
35   chr7   75828991       76161343     NR_003262        FDPSP2
36   chr8   97710376       98041644     NM_016134           CPQ
37   chr8   97710376       98041644     NR_125390  LOC101927066,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143097002      143197731     NR_110761  LOC102723769
1   chr11   67335078       67680747     NM_000695       ALDH3B2
2   chr11   67335078       67680747     NM_000852         GSTP1
4   chr11   67335078       67680747  NM_001166102        NDUFV1
5   chr11   67335078       67680747  NM_001243750         NUDT8
6   chr11   67335078       67680747     NM_005995         TBX10
7   chr11   67335078       67680747     NM_080658          ACY3
9   chr11   67335078       67680747     NR_024249      FAM86C2P
10  chr11   67335078       67680747     NR_033791        DOC2GP
11  chr11   67335078       67680747     NR_130935      C11orf72
12  chr18   14684737       15032658  NM_001145029      ANKRD30B
13  chr18   14684737       15032658     NR_036153     MIR3156-2
14  chr18   14684737       15032658     NR_104164     LINC01443
15  chr18   14684737       15032658     NR_110783     LINC01444
16  chr22   19058243       19197421  NM_001184781         DGCR2
17  chr22   19058243       19197421  NM_001256534       SLC25A1
18  chr22   19058243       19197421     NM_001835        CLTCL1
19  chr22   19058243       19197421     NM_005315          GSC2
21  chr22   19058243       19197421     NM_022719        DGCR14
22  chr22   19058243       19197421     NM_053006         TSSK2
23  chr22   19058243       19197421     NR_103767     LINC01311
24   chr4   69230308       69353471     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   76286302       76448908  NM_001322181    CNTNAP4
2    chr2  236677389      236793756  NM_001244888      AGAP1
4   chr22   18980418       19172321  NM_001184781      DGCR2
5   chr22   18980418       19172321  NM_001256534    SLC25A1
6   chr22   18980418       19172321     NM_001835     CLTCL1
7   chr22   18980418       19172321     NM_005315       GSC2
9   chr22   18980418       19172321     NM_022719     DGCR14
10  chr22   18980418       19172321     NM_053006      TSSK2
11  chr22   18980418       19172321     NR_002733      DGCR5
12  chr22   18980418       19172321     NR_024157     DGCR11
13  chr22   18980418       19172321     NR_024159      DGCR9
14  chr22   18980418       19172321     NR_026651     DGCR10
15  chr22   18980418       19172321     NR_103767  LINC01311
17   chr6  162844808      163092558     NM_013988      PARK2
18   chr7  102162189      102401730  NM_001031618     SPDYE2
20   chr7  102162189      102401730  NM_001097615    POLR2J3
21   chr7  102162189      102401730  NM_001114403     UPK3BL
22   chr7  102162189      102401730  NM_001277335     RASA4B
23   chr7  102162189      102401730     NM_006989      RASA4
24   chr7  102162189      102401730     NM_032959    POLR2J2
25   chr7  102162189      102401730     NR_026879    FAM185A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21744396       21930515  NM_001163380         RAB2B
1   chr14   21744396       21930515  NM_001170629          CHD8
2   chr14   21744396       21930515     NM_007192       SUPT16H
3   chr14   21744396       21930515     NM_020366       RPGRIP1
6   chr14   21744396       21930515     NR_002916        SNORD8
7   chr14   21744396       21930515     NR_003029        SNORD9
8    chr2   97133830       97361015  NM_001115016        KANSL3
9    chr2   97133830       97361015  NM_001285485        NEURL3
10   chr2   97133830       97361015  NM_001293083        FER1L5
11   chr2   97133830       97361015  NM_001319085        ARID5A
15   chr2   97133830       97361015     NR_135564  LOC105373496,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21836684       23683078  NM_001001912         OR4E2
1   chr14   21836684       23683078  NM_001005465        OR10G3
2   chr14   21836684       23683078  NM_001005466        OR10G2
3   chr14   21836684       23683078  NM_001039619         PRMT5
4   chr14   21836684       23683078  NM_001099780        PSMB11
5   chr14   21836684       23683078  NM_001126105        SLC7A7
7   chr14   21836684       23683078  NM_001130706      C14orf93
8   chr14   21836684       23683078  NM_001130725         PSMB5
10  chr14   21836684       23683078  NM_001163380         RAB2B
11  chr14   21836684       23683078  NM_001164815         ACIN1
13  chr14   21836684       23683078  NM_001170629          CHD8
14  chr14   21836684       23683078  NM_001267036        SLC7A8
17  chr14   21836684       23683078  NM_001289097         AJUBA
18  chr14   21836684       23683078  NM_001303523          TOX4
19  chr14   21836684       23683078  NM_001317107         OR4E1
20  chr14   21836684       23683078  NM_001318870        MRPL52
21  chr14   21836684       23683078  NM_001329226         LRP10
22  chr14   21836684       23683078     NM_001344          DAD1
23  chr14   21836684       23683078     NM_001805         CEBPE
24  chr14   21836684       23683078     NM_004995         MMP14
25  chr14   21836684       23683078     NM_005015         OXA1L
26  chr14   21836684       23683078     NM_007192       SUPT16H
28  chr14   21836684       23683078     NM_017815         HAUS4
29  chr14   21836684       23683078     NM_017924     C14orf119
30  chr14   21836684       23683078     NM_018107         RBM23
31  chr14   21836684       23683078     NM_019852        METTL3
33  chr14   21836684       23683078     NM_022060         ABHD4
34  chr14   21836684       23683078     NM_022478         CDH24
37  chr14   21836684       23683078     NM_173527          REM2
39  chr14   21836684       23683078     NR_002916        SNORD8
40  chr14   21836684       23683078     NR_003029        SNORD9
41  chr14   21836684       23683078     NR_039856       MIR4707
43  chr14   21836684       23683078     NR_110002  LOC101926933
44  chr14   21836684       23683078     NR_111966         SALL2
46  chr14   21836684       23683078     NR_120599     PRMT5-AS1
47  chr14   21869904       22216078  NM_001001912         OR4E2
48  chr14   21869904       22216078  NM_001005465        OR10G3
49  chr14   21869904       22216078  NM_001005466        OR10G2
50  chr14   21869904       22216078  NM_001163380         RAB2B
51  chr14   21869904       22216078  NM_001170629          CHD8
52  chr14   21869904       22216078  NM_001303523          TOX4
53  chr14   21869904       22216078  NM_001317107         OR4E1
54  chr14   21869904       22216078     NM_019852        METTL3
57  chr14   21869904       22216078     NR_111966         SALL2
59  chr16   21511580       21625230  NM_001077180        METTL9
61  chr16   21511580       21625230     NR_002594      SLC7A5P2
62  chr16   21511580       21625230     NR_027155        SMG1P3
63  chr16   21511580       21625230     NR_049833     MIR3680-2
64  chr16   21511580       21625230     NR_110930  LOC101927814
65   chr7   10841933       10983568     NM_002489        NDUFA4
66   chr7   16724369       17709948  NM_001159767          BZW2
67   chr7   16724369       17709948     NM_001621           AHR
68   chr7   16724369       17709948     NM_006408          AGR2
69   chr7   16724369       17709948     NM_014399       TSPAN13
70   chr7   16724369       17709948     NM_176813          AGR3
71   chr7   16724369       17709948     NR_110013  LOC101927630
72   chr7   16724369       17709948     NR_110014      KCCAT333,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143536162      145021347  NM_001002810       PDE4DIP
3   chr1  143536162      145021347  NM_001123068       PPIAL4G
4   chr1  143536162      145021347  NM_001135789       PPIAL4C
9   chr1  143536162      145021347  NM_001277444         NBPF9
10  chr1  143536162      145021347  NM_001278267        NBPF20
11  chr1  143536162      145021347  NM_001287385        FAM72C
12  chr1  143536162      145021347  NM_001345942        FAM72D
17  chr1  143536162      145021347     NR_003242        PFN1P2
18  chr1  143536162      145021347     NR_024511     LINC00623
20  chr1  143536162      145021347     NR_102405         NBPF8
21  chr1  143536162      145021347     NR_104014     LINC01138
22  chr1  143536162      145021347     NR_106967       MIR6077
23  chr1  143536162      145021347     NR_111930  LOC100132057
24  chr1  143536162      145021347     NR_111953     LINC00869
26  chr2  129523740      129766768     NR_110278  LOC101927881
27  chr5      75726         287902  NM_001080478       LRRC14B
28  chr5      75726         287902     NM_004168          SDHA
29  chr5      75726         287902     NM_013232         PDCD6
30  chr5      75726         287902     NM_052909      PLEKHG4B
31  chr5      75726         287902     NM_145265       CCDC127
33  chr5      75726         287902     NR_104613         HRAT5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49658364       49867720  NM_001323575         AGBL4
1    chr1   49658364       49867720     NR_046839     AGBL4-IT1
2    chr1   49658364       49867720     NR_125988  LOC101929721
3   chr11   64852754       65095304  NM_001004326      SLC22A20
4   chr11   64852754       65095304  NM_001008778         SPDYC
5   chr11   64852754       65095304  NM_001198868         CAPN1
7   chr11   64852754       65095304  NM_001242631       TMEM262
8   chr11   64852754       65095304  NM_001277233        TM7SF2
9   chr11   64852754       65095304     NM_001997           FAU
10  chr11   64852754       65095304     NM_002689         POLA2
11  chr11   64852754       65095304     NM_006779      CDC42EP2
12  chr11   64852754       65095304     NM_006782         ZFPL1
13  chr11   64852754       65095304     NM_013265         VPS51
14  chr11   64852754       65095304     NM_014205        ZNHIT2
15  chr11   64852754       65095304     NM_032431         SYVN1
17  chr11   64852754       65095304     NR_037567        MRPL49
20  chr11   64852754       65095304     NR_106809       MIR6751
21  chr15   20996319       21145514  NM_001277303        POTEB2
22  chr15   20996319       21145514     NM_207355        POTEB3
23  chr15   20996319       21145514     NR_028506         NF1P2
24  chr15   20996319       21145514     NR_036062     MIR3118-2
26  chr15   29773797       30002530  NM_001301025          TJP1
29  chr15   29773797       30002530     NM_015307      FAM189A1
30  chr15   29773797       30002530     NR_135221  LOC100130111
31  chr16   16353682       19880772  NM_001004060         NOMO2
32  chr16   16353682       19880772  NM_001004067         NOMO3
33  chr16   16353682       19880772  NM_001012991         KNOP1
34  chr16   16353682       19880772     NM_001019        RPS15A
35  chr16   16353682       19880772  NM_001105249          TMC5
36  chr16   16353682       19880772  NM_001160364          TMC7
37  chr16   16353682       19880772  NM_001190983          COQ7
38  chr16   16353682       19880772  NM_001199022        CCP110
39  chr16   16353682       19880772  NM_001256720       CLEC19A
41  chr16   16353682       19880772  NM_001282511        NPIPA8
44  chr16   16353682       19880772  NM_001304771        GPRC5B
45  chr16   16353682       19880772  NM_001305121          IQCK
46  chr16   16353682       19880772  NM_001308157         SYT17
48  chr16   16353682       19880772  NM_001313858       ARL6IP1
49  chr16   16353682       19880772  NM_001324066          GDE1
52  chr16   16353682       19880772     NM_015092          SMG1
58  chr16   16353682       19880772     NM_020314      C16orf62
59  chr16   16353682       19880772     NM_022166         XYLT1
61  chr16   16353682       19880772     NR_003569       ABCC6P1
62  chr16   16353682       19880772     NR_028028      ITPRIPL2
63  chr16   16353682       19880772     NR_036140     MIR3179-1
65  chr16   16353682       19880772     NR_036141     MIR3180-1
66  chr16   16353682       19880772     NR_036142     MIR3180-2
68  chr16   16353682       19880772     NR_036144     MIR3180-3
69  chr16   16353682       19880772     NR_036447        PKD1P1
70  chr16   16353682       19880772     NR_037442     MIR3670-1
71  chr16   16353682       19880772     NR_103772  LOC100288162
73  chr16   16353682       19880772     NR_106766     MIR6511A1
74  chr16   16353682       19880772     NR_106971     MIR6511A4
76  chr16   16353682       19880772     NR_107060     MIR6770-2
78  chr16   16353682       19880772     NR_119379  LOC102723385
80  chr16   16353682       19880772     NR_128713     MIR3670-4
81  chr16   16353682       19880772     NR_135179  LOC102723692,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28768851       30299457  NM_001130414         APBA2
1   chr15   28768851       30299457  NM_001282468       GOLGA8M
2   chr15   28768851       30299457  NM_001301025          TJP1
5   chr15   28768851       30299457     NM_015307      FAM189A1
6   chr15   28768851       30299457     NM_138704        NSMCE3
7   chr15   28768851       30299457     NR_026589       WHAMMP2
8   chr15   28768851       30299457     NR_033351       GOLGA8F
9   chr15   28768851       30299457     NR_033353       GOLGA8G
10  chr15   28768851       30299457     NR_036443       HERC2P9
11  chr15   28768851       30299457     NR_036475  LOC100289656
12  chr15   28768851       30299457     NR_037599     PDCD6IPP2
13  chr15   28768851       30299457     NR_047567     GOLGA6L7P
14  chr15   28768851       30299457     NR_135221  LOC100130111
15  chr15   79742211       81330816     NM_000137           FAH
16  chr15   79742211       81330816  NM_001100879          ST20
18  chr15   79742211       81330816  NM_001114735        BCL2A1
19  chr15   79742211       81330816  NM_001199758         MTHFS
20  chr15   79742211       81330816  NM_001199760    ST20-MTHFS
21  chr15   79742211       81330816  NM_001242911        ZFAND6
26  chr15   79742211       81330816  NM_001293298         CEMIP
28  chr15   79742211       81330816     NM_014862         ARNT2
29  chr15   79742211       81330816     NM_015154        MESDC2
30  chr15   79742211       81330816     NM_015206      KIAA1024
31  chr15   79742211       81330816     NM_021214       ABHD17C
32  chr15   79742211       81330816     NM_022566        MESDC1
33  chr15   79742211       81330816     NR_028330      ST20-AS1
34  chr15   79742211       81330816     NR_030393       MIR549A
35  chr15   79742211       81330816     NR_033833     LINC00927
38  chr15   79742211       81330816     NR_039739       MIR4514
39  chr15   79742211       81330816     NR_049837       MIR5572
40  chr15   79742211       81330816     NR_120317     LINC01314
41  chr15   79742211       81330816     NR_120363  LOC101929586
43   chr2  193446009      193854874     NR_002769        PCGEM1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21822579       22287533  NM_001001912     OR4E2
1   chr14   21822579       22287533  NM_001005465    OR10G3
2   chr14   21822579       22287533  NM_001005466    OR10G2
3   chr14   21822579       22287533  NM_001163380     RAB2B
4   chr14   21822579       22287533  NM_001170629      CHD8
5   chr14   21822579       22287533  NM_001303523      TOX4
6   chr14   21822579       22287533  NM_001317107     OR4E1
7   chr14   21822579       22287533     NM_007192   SUPT16H
8   chr14   21822579       22287533     NM_019852    METTL3
11  chr14   21822579       22287533     NR_002916    SNORD8
12  chr14   21822579       22287533     NR_003029    SNORD9
13  chr14   21822579       22287533     NR_111966     SALL2
15   chr7   75762706       75903171  NM_001110199     SRRM3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21832078       22838275  NM_001001912     OR4E2
1   chr14   21832078       22838275  NM_001005465    OR10G3
2   chr14   21832078       22838275  NM_001005466    OR10G2
3   chr14   21832078       22838275  NM_001163380     RAB2B
4   chr14   21832078       22838275  NM_001170629      CHD8
5   chr14   21832078       22838275  NM_001303523      TOX4
6   chr14   21832078       22838275  NM_001317107     OR4E1
7   chr14   21832078       22838275     NM_007192   SUPT16H
8   chr14   21832078       22838275     NM_019852    METTL3
11  chr14   21832078       22838275     NR_002916    SNORD8
12  chr14   21832078       22838275     NR_003029    SNORD9
13  chr14   21832078       22838275     NR_111966     SALL2
15   chr4   98901794       99053857     NM_174952     STPG2
16   chr9     207850         373750  NM_001190458     DOCK8
17   chr9     207850         373750     NM_152569   C9orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143672394      143829712  NM_001123068       PPIAL4G
1    chr1  143672394      143829712     NR_104014     LINC01138
2    chr1  143672394      143829712     NR_106967       MIR6077
3    chr1  143672394      143829712     NR_111930  LOC100132057
4    chr1  145126434      145229594  NM_001277444         NBPF9
5    chr1  145126434      145229594  NM_001278267        NBPF20
6    chr1  145126434      145229594     NM_203458      NOTCH2NL
7   chr13   19707623       19864151     NM_006001        TUBA3C
8   chr13   19707623       19864151     NR_027248     ANKRD26P3
9   chr13   19707623       19864151     NR_126054  LOC101928697
10  chr16   16383905       16582690  NM_001004067         NOMO3
11  chr16   16383905       16582690  NM_001282511        NPIPA8
12  chr16   16383905       16582690     NR_036140     MIR3179-1
13  chr16   16383905       16582690     NR_036141     MIR3180-1
14  chr16   16383905       16582690     NR_036142     MIR3180-2
15  chr16   16383905       16582690     NR_036447        PKD1P1
16  chr16   16383905       16582690     NR_103772  LOC100288162
17  chr16   16383905       16582690     NR_106766     MIR6511A1
18  chr16   16383905       16582690     NR_106971     MIR6511A4
19  chr16   16383905       16582690     NR_107060     MIR6770-2
20  chr16   16383905       16582690     NR_128713     MIR3670-4
21  chr18   61746029       61899882     NR_027245     LINC00305
22  chr18   61746029       61899882     NR_033881     LOC284294
23  chr18   61746029       61899882     NR_033983     LINC01538
24  chr20   14794239       15030188     NM_080676       MACROD2
25  chr20   14794239       15030188     NR_037841   MACROD2-AS1
27   chr3  192424096      193719374     NM_004113         FGF12
28   chr3  192424096      193719374     NM_015560          OPA1
29   chr3  192424096      193719374     NM_020386        HRASLS
30   chr3  192424096      193719374     NM_032279       ATP13A4
31   chr3  192424096      193719374     NM_178496        MB21D2
32   chr3  192424096      193719374     NM_198505       ATP13A5
33   chr3  192424096      193719374     NR_026877       MGC2889
34   chr3  192424096      193719374     NR_027764       DPPA2P3
35   chr3  192424096      193719374     NR_033944     LOC647323
36   chr3  192424096      193719374     NR_046634      OPA1-AS1
37   chr3  192424096      193719374     NR_046726   ATP13A4-AS1
38   chr3  192424096      193719374     NR_046758   ATP13A5-AS1
40   chr9    4521140        4658904  NM_001039395       SPATA6L
41   chr9    4521140        4658904     NM_004170        SLC1A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28423361       28572108     NM_004667         HERC2
1   chr16   16368462       16545435  NM_001004067         NOMO3
2   chr16   16368462       16545435  NM_001282511        NPIPA8
3   chr16   16368462       16545435     NR_036140     MIR3179-1
4   chr16   16368462       16545435     NR_036141     MIR3180-1
5   chr16   16368462       16545435     NR_036142     MIR3180-2
6   chr16   16368462       16545435     NR_036447        PKD1P1
7   chr16   16368462       16545435     NR_103772  LOC100288162
8   chr16   16368462       16545435     NR_106766     MIR6511A1
9   chr16   16368462       16545435     NR_106971     MIR6511A4
10  chr16   16368462       16545435     NR_107060     MIR6770-2
11  chr16   16368462       16545435     NR_128713     MIR3670-4
12  chr17   63575670       63724192  NM_001037325        CEP112
15  chr20   25303619       25619559  NM_001042472        ABHD12
16  chr20   25303619       25619559  NM_001318226          NINL
18  chr20   25303619       25619559     NM_021067         GINS1
19  chr20   25303619       25619559     NM_152667          NANP
20  chr20   25303619       25619559     NR_126465    ZNF337-AS1
23  chr21   13463027       14871551     NR_026916    ANKRD30BP2
24  chr21   13463027       14871551     NR_036164     MIR3156-3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81433008       81589497  NM_001278495        NUTM2B
1   chr10   81433008       81589497     NR_027512       BEND3P3
2   chr10   81433008       81589497     NR_029407     LOC642361
3   chr10   81433008       81589497     NR_120611    NUTM2B-AS1
6   chr11    5436449        6193126  NM_001001913        OR52N1
7   chr11    5436449        6193126  NM_001001917        OR56A1
8   chr11    5436449        6193126  NM_001001922        OR52N5
9   chr11    5436449        6193126  NM_001003443        OR56A3
10  chr11    5436449        6193126  NM_001003819  TRIM6-TRIM34
11  chr11    5436449        6193126  NM_001003827        TRIM34
12  chr11    5436449        6193126  NM_001004052        OR52B2
13  chr11    5436449        6193126  NM_001004754        OR51I2
14  chr11    5436449        6193126  NM_001004757        OR51Q1
15  chr11    5436449        6193126  NM_001005162        OR52B6
16  chr11    5436449        6193126  NM_001005163        OR52D1
17  chr11    5436449        6193126  NM_001005165        OR52E4
18  chr11    5436449        6193126  NM_001005167        OR52E6
19  chr11    5436449        6193126  NM_001005168        OR52E8
20  chr11    5436449        6193126  NM_001005173        OR52L1
21  chr11    5436449        6193126  NM_001005174        OR52N2
22  chr11    5436449        6193126  NM_001005175        OR52N4
23  chr11    5436449        6193126  NM_001005179        OR56A4
24  chr11    5436449        6193126  NM_001005180        OR56B1
25  chr11    5436449        6193126  NM_001005181        OR56B4
26  chr11    5436449        6193126  NM_001005288        OR51I1
27  chr11    5436449        6193126  NM_001005289        OR52H1
28  chr11    5436449        6193126  NM_001005567        OR51B5
29  chr11    5436449        6193126  NM_001146033        OR56A5
30  chr11    5436449        6193126  NM_001198644         TRIM6
31  chr11    5436449        6193126     NM_006074        TRIM22
32  chr11    5436449        6193126     NM_017481        UBQLN3
34  chr11    5436449        6193126     NM_033034         TRIM5
37  chr11    5436449        6193126     NM_145053        UBQLNL
39  chr11    5436449        6193126     NR_133006        OLFM5P
40  chr14   21751122       21907777  NM_001170629          CHD8
41  chr14   21751122       21907777     NM_007192       SUPT16H
42  chr14   21751122       21907777     NM_020366       RPGRIP1
44  chr14   21751122       21907777     NR_002916        SNORD8
45  chr14   21751122       21907777     NR_003029        SNORD9
46  chr14   41749825       42077767  NM_001346175         LRFN5
47  chr20   14813408       15331818  NM_001033087       MACROD2
49  chr20   14813408       15331818     NR_037841   MACROD2-AS1
51   chr3  165334995      165756236     NM_000055          BCHE
52   chr6  120272623      120438805     NR_036098       MIR3144,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   21485911       21598659     NR_002594   SLC7A5P2
1   chr16   21485911       21598659     NR_027155     SMG1P3
2   chr16   21485911       21598659     NR_049833  MIR3680-2
3   chr22   19021244       19204302  NM_001184781      DGCR2
4   chr22   19021244       19204302  NM_001256534    SLC25A1
5   chr22   19021244       19204302     NM_001835     CLTCL1
6   chr22   19021244       19204302     NM_005315       GSC2
8   chr22   19021244       19204302     NM_022719     DGCR14
9   chr22   19021244       19204302     NM_053006      TSSK2
10  chr22   19021244       19204302     NR_024157     DGCR11
11  chr22   19021244       19204302     NR_103767  LINC01311
12   chr7   18400161       18512621  NM_001204144      HDAC9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143582218      143970973  NM_001123068       PPIAL4G
1    chr1  143582218      143970973  NM_001287385        FAM72C
2    chr1  143582218      143970973  NM_001345942        FAM72D
6    chr1  143582218      143970973     NR_104014     LINC01138
7    chr1  143582218      143970973     NR_106967       MIR6077
8    chr1  143582218      143970973     NR_111930  LOC100132057
10   chr1  145269617      145443506  NM_001277444         NBPF9
11   chr1  145269617      145443506  NM_001278267        NBPF20
12   chr1  145269617      145443506  NM_001302371        NBPF10
13   chr1  145269617      145443506  NM_001313972         TXNIP
15   chr1  145269617      145443506     NM_145277          HFE2
16   chr1  145269617      145443506     NM_203458      NOTCH2NL
17   chr1  145269617      145443506     NR_104217       NBPF25P
18   chr1  145269617      145443506     NR_125967  LOC101928979
19  chr19   21692382       21824676  NM_001001415        ZNF429,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11     667031         925215     NM_001004         RPLP2
1   chr11     667031         925215  NM_001025234        TSPAN4
4   chr11     667031         925215  NM_001039490         CD151
5   chr11     667031         925215  NM_001042463        TMEM80
6   chr11     667031         925215  NM_001142675         CHID1
7   chr11     667031         925215  NM_001191060      SLC25A22
10  chr11     667031         925215  NM_001286606       CRACR2B
11  chr11     667031         925215  NM_001293167         PANO1
12  chr11     667031         925215  NM_001318824         PDDC1
14  chr11     667031         925215     NM_006755        TALDO1
15  chr11     667031         925215     NM_016564         CEND1
16  chr11     667031         925215     NM_020376        PNPLA2
17  chr11     667031         925215     NM_021008         DEAF1
18  chr11     667031         925215     NM_021128        POLR2L
19  chr11     667031         925215     NM_022772        EPS8L2
22  chr11     667031         925215     NM_145886         PIDD1
23  chr11     667031         925215     NR_002585       SNORA52
24  chr11     667031         925215     NR_126342     LOC171391
25  chr12   72694436       73135866     NM_013381         TRHDE
26  chr15   20627170       21085477  NM_001145004      GOLGA6L6
27  chr15   20627170       21085477  NM_001277303        POTEB2
28  chr15   20627170       21085477     NM_207355        POTEB3
29  chr15   20627170       21085477     NR_027411      GOLGA8CP
30  chr15   20627170       21085477     NR_027992        NBEAP1
31  chr15   20627170       21085477     NR_036062     MIR3118-2
32  chr15   20627170       21085477     NR_036432       HERC2P3
34  chr15   28268069       29847068     NM_000275          OCA2
35  chr15   28268069       29847068  NM_001130414         APBA2
36  chr15   28268069       29847068  NM_001282468       GOLGA8M
38  chr15   28268069       29847068     NM_004667         HERC2
39  chr15   28268069       29847068     NM_015307      FAM189A1
40  chr15   28268069       29847068     NM_138704        NSMCE3
41  chr15   28268069       29847068     NR_026589       WHAMMP2
42  chr15   28268069       29847068     NR_033351       GOLGA8F
44  chr15   28268069       29847068     NR_033353       GOLGA8G
46  chr15   28268069       29847068     NR_036443       HERC2P9
47  chr15   28268069       29847068     NR_036475  LOC100289656
48  chr15   28268069       29847068     NR_037599     PDCD6IPP2
49  chr15   28268069       29847068     NR_039734     MIR4509-3
51  chr15   28268069       29847068     NR_047567     GOLGA6L7P
52  chr17    3821384        3952831     NM_015113         ZZEF1
53  chr17    3821384        3952831     NM_174955        ATP2A3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr21   28170781       28302727     NM_006988    ADAMTS1
1   chr21   28170781       28302727     NM_007038    ADAMTS5
2    chr7   17727962       18979794  NM_001204144      HDAC9
8    chr7   17727962       18979794     NM_015132      SNX13
10   chr7   17727962       18979794     NM_175886    PRPS1L1
12   chr7   17727962       18979794     NR_031635  MIR1302-6
14   chr8     519672         622832  NM_001303100     ERICH1
16   chr9   39053611       40088562  NM_001085452  SPATA31A1
18   chr9   39053611       40088562     NM_033655    CNTNAP3
19   chr9   39053611       40088562     NR_003528    ZNF658B
20   chr9   39053611       40088562     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   21692246       21845199     NM_007192        SUPT16H
1   chr14   21692246       21845199     NM_020366        RPGRIP1
2   chr14   21692246       21845199     NM_031314         HNRNPC
3   chr15   29815576       29917636     NM_015307       FAM189A1
4   chr16   29459098       29884978  NM_001014999          SLX1A
5   chr16   29459098       29884978  NM_001017390        SULT1A4
6   chr16   29459098       29884978  NM_001030288            SPN
7   chr16   29459098       29884978  NM_001031827          BOLA2
8   chr16   29459098       29884978  NM_001114099         SEZ6L2
9   chr16   29459098       29884978  NM_001256269          KIF22
11  chr16   29459098       29884978  NM_001256443          PRRT2
12  chr16   29459098       29884978  NM_001276275            MAZ
13  chr16   29459098       29884978  NM_001286585          CDIPT
14  chr16   29459098       29884978  NM_001293204            MVP
15  chr16   29459098       29884978  NM_001318249           QPRT
16  chr16   29459098       29884978  NM_001320622   BOLA2-SMG1P6
21  chr16   29459098       29884978     NM_024516          PAGR1
22  chr16   29459098       29884978     NM_152338           ZG16
23  chr16   29459098       29884978     NM_175900       C16orf54
24  chr16   29459098       29884978     NR_002454      LOC606724
25  chr16   29459098       29884978     NR_002556      LOC388242
26  chr16   29459098       29884978     NR_015396      CDIPT-AS1
28  chr16   29459098       29884978     NR_037608  SLX1A-SULT1A3
29  chr16   29459098       29884978     NR_049833      MIR3680-2
31  chr16   29459098       29884978     NR_135305         SMG1P2
33  chr20   14711371       15051261     NM_080676        MACROD2
34  chr20   14711371       15051261     NR_037841    MACROD2-AS1
36   chr5   63842005       64064661  NM_001029875         RGS7BP
37   chr5   63842005       64064661  NM_001164442        FAM159B
38   chr5   63842005       64064661     NM_173829       SREK1IP1
40   chr6  162195788      162556603     NM_013988          PARK2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   48368804       49117704  NM_001005512       OR4A47
1   chr11   48368804       49117704  NM_001005513       OR4C45
2   chr11   48368804       49117704  NM_001206626      TRIM49B
3   chr11   48368804       49117704  NM_001206631      TRIM64C
4   chr11   55766763       56505994  NM_001001921       OR5AS1
5   chr11   55766763       56505994  NM_001002907        OR8K1
6   chr11   55766763       56505994  NM_001002925       OR5AP2
7   chr11   55766763       56505994  NM_001003750        OR8I2
8   chr11   55766763       56505994  NM_001004058        OR8K5
9   chr11   55766763       56505994  NM_001004064        OR8J3
10  chr11   55766763       56505994  NM_001004730       OR5AR1
11  chr11   55766763       56505994  NM_001004740        OR5M1
12  chr11   55766763       56505994  NM_001004741       OR5M10
13  chr11   55766763       56505994  NM_001004742        OR5M3
14  chr11   55766763       56505994  NM_001004743        OR5M9
15  chr11   55766763       56505994  NM_001004744        OR5R1
16  chr11   55766763       56505994  NM_001004745        OR5T1
17  chr11   55766763       56505994  NM_001004746        OR5T2
18  chr11   55766763       56505994  NM_001004747        OR5T3
19  chr11   55766763       56505994  NM_001005199        OR8H1
20  chr11   55766763       56505994  NM_001005200        OR8H2
21  chr11   55766763       56505994  NM_001005201        OR8H3
22  chr11   55766763       56505994  NM_001005202        OR8K3
23  chr11   55766763       56505994  NM_001005204        OR8U1
24  chr11   55766763       56505994  NM_001005205        OR8J1
25  chr11   55766763       56505994  NM_001005245       OR5M11
26  chr11   55766763       56505994  NM_001005282        OR5M8
27  chr11   55766763       56505994  NM_001005492        OR5J2
28  chr11   55766763       56505994  NM_001013356        OR8U8
29  chr11   55766763       56505994  NM_001013358        OR9G9
30  chr11   67204370       67368419     NM_000852        GSTP1
31  chr11   67204370       67368419  NM_001018070       CORO1B
32  chr11   67204370       67368419  NM_001078650      TMEM134
33  chr11   67204370       67368419  NM_001300895        CABP4
35  chr11   67204370       67368419  NM_001302959          AIP
36  chr11   67204370       67368419  NM_001318496        CABP2
38  chr11   67204370       67368419     NM_004910      PITPNM1
39  chr11   67204370       67368419     NM_005608      PTPRCAP
40  chr11   67204370       67368419     NM_005851      CDK2AP2
43  chr11   67204370       67368419     NM_206997       GPR152
45  chr11   67204370       67368419     NR_106810      MIR6752
46  chr16   29544358       29925164  NM_001030288          SPN
47  chr16   29544358       29925164  NM_001114099       SEZ6L2
48  chr16   29544358       29925164  NM_001256269        KIF22
50  chr16   29544358       29925164  NM_001256443        PRRT2
51  chr16   29544358       29925164  NM_001276275          MAZ
52  chr16   29544358       29925164  NM_001286585        CDIPT
53  chr16   29544358       29925164  NM_001293204          MVP
54  chr16   29544358       29925164  NM_001318249         QPRT
58  chr16   29544358       29925164     NM_024516        PAGR1
59  chr16   29544358       29925164     NM_152338         ZG16
60  chr16   29544358       29925164     NM_175900     C16orf54
61  chr16   29544358       29925164     NM_178863       KCTD13
62  chr16   29544358       29925164     NM_181718       ASPHD1
63  chr16   29544358       29925164     NR_015396    CDIPT-AS1
65  chr16   29544358       29925164     NR_049833    MIR3680-2
66  chr16   29544358       29925164     NR_135305       SMG1P2
68  chr20   14809170       15024794     NM_080676      MACROD2
69  chr20   14809170       15024794     NR_037841  MACROD2-AS1
71   chr3    2227357        2696926  NM_001206955        CNTN4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   84041365       84698061     NM_052910    SLITRK1
1   chr14   21865348       22024048  NM_001163380      RAB2B
2   chr14   21865348       22024048  NM_001170629       CHD8
3   chr14   21865348       22024048  NM_001303523       TOX4
4   chr14   21865348       22024048     NM_019852     METTL3
7   chr14   21865348       22024048     NR_002916     SNORD8
8   chr14   21865348       22024048     NR_111966      SALL2
10  chr15   85765756       85873957  NM_001310153   GOLGA6L3
11   chr4   69206036       69324052  NM_001031732     YTHDC1
12   chr4   69206036       69324052     NM_014058  TMPRSS11E
13   chr5  104176263      104456138     NR_000039    RAB9BP1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21770170       21878401  NM_001170629      CHD8
1  chr14   21770170       21878401     NM_007192   SUPT16H
2  chr14   21770170       21878401     NM_020366   RPGRIP1
4  chr14   21770170       21878401     NR_002916    SNORD8
5  chr14   21770170       21878401     NR_003029    SNORD9
6   chr7    3286718        3391319     NM_152744      SDK1
7   chr7   69078370       69689481  NM_001127231     AUTS2,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr15   28714546       28818926     NR_033351            GOLGA8F
1   chr15   28714546       28818926     NR_033353            GOLGA8G
2   chr15   28714546       28818926     NR_039734          MIR4509-3
3   chr20   14883331       15231194  NM_001033087            MACROD2
5   chr20   14883331       15231194     NR_037841        MACROD2-AS1
7   chr22   17013102       17359276     NM_014406             CCT8L2
8   chr22   17013102       17359276     NM_175878               XKR3
9   chr22   17013102       17359276     NR_001591             TPTEP1
10  chr22   17013102       17359276     NR_003607            HSFY1P1
11  chr22   17013102       17359276     NR_040115  ANKRD62P1-PARP4P3
12  chr22   17013102       17359276     NR_134584       LOC101929350
13   chr9   72251795       79982956     NM_000689            ALDH1A1
14   chr9   72251795       79982956     NM_000700              ANXA1
15   chr9   72251795       79982956  NM_001007471              TRPM3
16   chr9   72251795       79982956  NM_001010940           C9orf135
17   chr9   72251795       79982956  NM_001013735              FOXB2
18   chr9   72251795       79982956  NM_001018038             VPS13A
19   chr9   72251795       79982956  NM_001025780            ABHD17B
20   chr9   72251795       79982956  NM_001097634              GCNT1
23   chr9   72251795       79982956  NM_001099666              PTAR1
24   chr9   72251795       79982956  NM_001102420             ZFAND5
25   chr9   72251795       79982956  NM_001128618            C9orf57
26   chr9   72251795       79982956  NM_001135820              TMEM2
27   chr9   72251795       79982956     NM_001163              APBA1
28   chr9   72251795       79982956  NM_001177310              TRPM6
30   chr9   72251795       79982956  NM_001190482              PCSK5
31   chr9   72251795       79982956     NM_001206               KLF9
32   chr9   72251795       79982956  NM_001242505                GDA
35   chr9   72251795       79982956  NM_001308051             PRUNE2
36   chr9   72251795       79982956  NM_001320497            CARNMT1
37   chr9   72251795       79982956  NM_001330679              NMRK1
39   chr9   72251795       79982956     NM_006914               RORB
40   chr9   72251795       79982956     NM_012383              OSTF1
41   chr9   72251795       79982956     NM_015110               SMC5
46   chr9   72251795       79982956     NM_017998            C9orf40
47   chr9   72251795       79982956     NM_018339                RFK
50   chr9   72251795       79982956     NM_138691               TMC1
52   chr9   72251795       79982956     NM_153267             MAMDC2
53   chr9   72251795       79982956     NM_182505            C9orf85
55   chr9   72251795       79982956     NR_015342               PCA3
56   chr9   72251795       79982956     NR_026668         VPS13A-AS1
57   chr9   72251795       79982956     NR_026890             RPSAP9
58   chr9   72251795       79982956     NR_029621             MIR204
59   chr9   72251795       79982956     NR_031679           MIR548H3
60   chr9   72251795       79982956     NR_038833       C9orf135-AS1
61   chr9   72251795       79982956     NR_039990           SMC5-AS1
62   chr9   72251795       79982956     NR_040076         MAMDC2-AS1
63   chr9   72251795       79982956     NR_110952          LINC01504
66   chr9   72251795       79982956     NR_121120          LINC01474
67   chr9   72251795       79982956     NR_121182       LOC101927358
68   chr9   72251795       79982956     NR_121183        C9orf41-AS1
69   chr9   72251795       79982956     NR_125791           RORB-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  219965105      220242012  NM_001286151      BPNT1
1    chr1  219965105      220242012     NM_004446       EPRS
2    chr1  219965105      220242012     NR_002753    RNU5F-1
3    chr1  219965105      220242012     NR_046437   SLC30A10
4   chr14   21828003       21976738  NM_001163380      RAB2B
5   chr14   21828003       21976738  NM_001170629       CHD8
6   chr14   21828003       21976738  NM_001303523       TOX4
7   chr14   21828003       21976738     NM_007192    SUPT16H
8   chr14   21828003       21976738     NM_019852     METTL3
11  chr14   21828003       21976738     NR_002916     SNORD8
12  chr14   21828003       21976738     NR_003029     SNORD9
13  chr16   68597972       68772610  NM_001305204      ZFP90
15  chr16   68597972       68772610  NM_001317184       CDH1
16  chr16   68597972       68772610  NM_001317195       CDH3
17  chr18   35061888       35235953     NM_020180      CELF4
18   chr7   75737044       75850219  NM_001110199      SRRM3
19   chr7   75737044       75850219     NR_135079    GTF2IP7
20   chr8  103919998      104507836  NM_001164615       FZD6
21   chr8  103919998      104507836  NM_001256099     CTHRC1
22   chr8  103919998      104507836     NM_001695   ATP6V1C1
24   chr8  103919998      104507836     NM_015420     DCAF13
25   chr8  103919998      104507836     NM_024812      BAALC
26   chr8  103919998      104507836     NM_030780   SLC25A32
28   chr8  103919998      104507836     NR_027071  BAALC-AS2
29   chr8  103919998      104507836     NR_036106    MIR3151
30   chr8  103919998      104507836     NR_109954  BAALC-AS1
31   chr8  103919998      104507836     NR_126339  AZIN1-AS1
32   chr9   20766036       20914816     NM_017794      FOCAD,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11    4800036        5274676     NM_000184           HBG2
1   chr11    4800036        5274676     NM_000518            HBB
2   chr11    4800036        5274676     NM_000519            HBD
3   chr11    4800036        5274676     NM_000559           HBG1
4   chr11    4800036        5274676  NM_001001916         OR52J3
5   chr11    4800036        5274676  NM_001004748         OR51A2
6   chr11    4800036        5274676  NM_001004749         OR51A7
7   chr11    4800036        5274676  NM_001004753         OR51F2
8   chr11    4800036        5274676  NM_001004755         OR51L1
9   chr11    4800036        5274676  NM_001004758         OR51S1
10  chr11    4800036        5274676  NM_001004759         OR51T1
11  chr11    4800036        5274676  NM_001004760         OR51V1
12  chr11    4800036        5274676  NM_001005160         OR52A5
13  chr11    4800036        5274676  NM_001005164         OR52E2
14  chr11    4800036        5274676  NM_001005177         OR52R1
15  chr11    4800036        5274676  NM_001005237         OR51G1
16  chr11    4800036        5274676  NM_001005238         OR51G2
17  chr11    4800036        5274676  NM_001005329         OR51A4
18  chr11    4800036        5274676     NM_012375         OR52A1
19  chr11    4800036        5274676     NM_021801          MMP26
20  chr11    4800036        5274676     NR_001589          HBBP1
21  chr11    4800036        5274676     NR_121648          BGLT3
22  chr14   47810692       47967327  NM_001113498          MDGA2
25  chr15   20258479       20587286     NR_038836        CHEK2P2
26  chr16   14680265       16084037  NM_001040113          MYH11
27  chr16   14680265       16084037  NM_001128423         MPV17L
28  chr16   14680265       16084037  NM_001134477           PARN
29  chr16   14680265       16084037  NM_001142469       C16orf45
30  chr16   14680265       16084037  NM_001143979           NDE1
31  chr16   14680265       16084037  NM_001184998       KIAA0430
32  chr16   14680265       16084037  NM_001270767          NTAN1
33  chr16   14680265       16084037  NM_001277323         NPIPA3
35  chr16   14680265       16084037  NM_001277324         NPIPA2
37  chr16   14680265       16084037  NM_001277325         NPIPA5
38  chr16   14680265       16084037  NM_001285445         PDXDC1
43  chr16   14680265       16084037  NM_001301064           RRN3
45  chr16   14680265       16084037     NM_004996          ABCC1
46  chr16   14680265       16084037     NM_006985         NPIPA1
47  chr16   14680265       16084037     NM_014287          NOMO1
48  chr16   14680265       16084037     NM_016561           BFAR
51  chr16   14680265       16084037     NR_023387        ABCC6P2
52  chr16   14680265       16084037     NR_030159         MIR484
53  chr16   14680265       16084037     NR_036140      MIR3179-1
54  chr16   14680265       16084037     NR_036141      MIR3180-1
55  chr16   14680265       16084037     NR_036142      MIR3180-2
56  chr16   14680265       16084037     NR_037466      MIR3180-4
57  chr16   14680265       16084037     NR_103772   LOC100288162
58  chr16   14680265       16084037     NR_106761        MIR6506
59  chr16   14680265       16084037     NR_106775      MIR6511B1
60  chr16   14680265       16084037     NR_106965      MIR6511B2
61  chr16   14680265       16084037     NR_106970      MIR6511A3
62  chr16   14680265       16084037     NR_107060      MIR6770-2
63  chr16   14680265       16084037     NR_123721  PKD1P6-NPIPP1
65  chr16   14680265       16084037     NR_125434   LOC100505915
66  chr16   14680265       16084037     NR_128713      MIR3670-4
67  chr16   14680265       16084037     NR_130755          FOPNL
68  chr16   14680265       16084037     NR_133651        PLA2G10
69   chr2  210279875      210465994  NM_001039538           MAP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    6752796        6924406     NR_038291     LINC00707
1   chr10    6752796        6924406     NR_108074     LINC00706
2   chr10    6752796        6924406     NR_138480         LINP1
3   chr14   21779082       21932035  NM_001163380         RAB2B
4   chr14   21779082       21932035  NM_001170629          CHD8
5   chr14   21779082       21932035     NM_007192       SUPT16H
6   chr14   21779082       21932035     NM_020366       RPGRIP1
9   chr14   21779082       21932035     NR_002916        SNORD8
10  chr14   21779082       21932035     NR_003029        SNORD9
11   chr2  186608998      187231455     NM_173651         FSIP2
12   chr2  186608998      187231455     NR_110218     LINC01473
13   chr2  186608998      187231455     NR_144453     FSIP2-AS1
15   chr7   64220932       64442510  NM_001160183        ZNF138
16   chr7   64220932       64442510     NM_015852        ZNF117
17   chr7   64220932       64442510     NM_021148        ZNF273
19   chr7  157366232      157871816  NM_001308267        PTPRN2
21   chr7  157366232      157871816     NR_029689      MIR153-2
22   chr7  157366232      157871816     NR_038966  LOC100506585,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   95766838       96302662  NM_001160100        CLDN10
1   chr13   95766838       96302662  NM_001301829         ABCC4
4   chr13   95766838       96302662     NM_014934         DZIP1
5   chr13   95766838       96302662     NR_046533    CLDN10-AS1
6   chr14   21804454       21922494  NM_001170629          CHD8
7   chr14   21804454       21922494     NM_007192       SUPT16H
8   chr14   21804454       21922494     NM_020366       RPGRIP1
10  chr14   21804454       21922494     NR_002916        SNORD8
11  chr14   21804454       21922494     NR_003029        SNORD9
12  chr16   68540102       68861116  NM_001305204         ZFP90
14  chr16   68540102       68861116  NM_001317184          CDH1
15  chr16   68540102       68861116  NM_001317195          CDH3
16  chr16   68540102       68861116     NR_106988     MIR7641-2
17  chr18   24813208       25797595  NM_001308176          CDH2
19  chr18   24813208       25797595     NR_134589  LOC105372038
20   chr3  163664963      163967255     NR_031665       MIR1263,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   14991834       15152204  NM_001270767         NTAN1
1   chr16   14991834       15152204  NM_001285445        PDXDC1
7   chr16   14991834       15152204     NM_006985        NPIPA1
8   chr16   14991834       15152204     NR_036140     MIR3179-1
9   chr16   14991834       15152204     NR_036141     MIR3180-1
10  chr16   14991834       15152204     NR_036142     MIR3180-2
11  chr16   14991834       15152204     NR_103772  LOC100288162
12  chr16   14991834       15152204     NR_106970     MIR6511A3
13  chr16   14991834       15152204     NR_107060     MIR6770-2
14  chr16   14991834       15152204     NR_128713     MIR3670-4
15   chr2  242403806      243157159  NM_001164356         THAP4
16   chr2  242403806      243157159  NM_001165031         DTYMK
17   chr2  242403806      243157159  NM_001167601          NEU4
19   chr2  242403806      243157159  NM_001271978         STK25
22   chr2  242403806      243157159  NM_001282983         FARP2
23   chr2  242403806      243157159  NM_001287249        D2HGDH
24   chr2  242403806      243157159  NM_001330161          ING5
26   chr2  242403806      243157159     NM_005018         PDCD1
29   chr2  242403806      243157159     NM_022134       GAL3ST2
31   chr2  242403806      243157159     NM_032515           BOK
32   chr2  242403806      243157159     NM_173821          RTP5
33   chr2  242403806      243157159     NM_178326         ATG4B
34   chr2  242403806      243157159     NR_033346       BOK-AS1
35   chr2  242403806      243157159     NR_036083       MIR3133
36   chr2  242403806      243157159     NR_110220     LINC01237
37   chr2  242403806      243157159     NR_110592  LOC102723927
38   chr2  242403806      243157159     NR_130699     LOC728323
39   chr2  242403806      243157159     NR_135766     LOC285095,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21862194       22006226  NM_001163380      RAB2B
1   chr14   21862194       22006226  NM_001170629       CHD8
2   chr14   21862194       22006226  NM_001303523       TOX4
3   chr14   21862194       22006226     NM_019852     METTL3
6   chr14   21862194       22006226     NR_002916     SNORD8
7   chr14   21862194       22006226     NR_111966      SALL2
9   chr15   30284196       30392595  NM_001282472    GOLGA8J
10  chr15  100127308      100324283  NM_001130928      MEF2A
11  chr15  100127308      100324283  NM_001284417     LYSMD4
14   chr3  162866134      163059587     NR_033945  LINC01192
15   chr9   11961201       12694041     NM_000550      TYRP1
16   chr9   20800411       20954122     NM_017794      FOCAD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56507677       56741540  NM_001142770        PCDH15
3   chr16   10515012       10615475  NM_001256160       ATF7IP2
5   chr16   12195335       12301085     NM_032167         SNX29
6   chr16   16374215       17165857  NM_001004067         NOMO3
7   chr16   16374215       17165857  NM_001282511        NPIPA8
8   chr16   16374215       17165857     NR_036140     MIR3179-1
9   chr16   16374215       17165857     NR_036141     MIR3180-1
10  chr16   16374215       17165857     NR_036142     MIR3180-2
11  chr16   16374215       17165857     NR_036447        PKD1P1
12  chr16   16374215       17165857     NR_103772  LOC100288162
13  chr16   16374215       17165857     NR_106766     MIR6511A1
14  chr16   16374215       17165857     NR_106971     MIR6511A4
15  chr16   16374215       17165857     NR_107060     MIR6770-2
16  chr16   16374215       17165857     NR_128713     MIR3670-4
17  chr17   47852201       48168868  NM_001077503          TAC4
18  chr17   47852201       48168868  NM_001199158          KAT7
19  chr17   47852201       48168868  NM_001242791      FLJ45513
20  chr17   47852201       48168868     NM_001934          DLX4
21  chr17   47852201       48168868     NM_002204         ITGA3
22  chr17   47852201       48168868     NM_005220          DLX3
24  chr17   47852201       48168868     NR_038230     LOC284080
25   chr6  144705488      145021664     NM_007124          UTRN
26   chr6  144705488      145021664     NR_132778       SNORA98
27   chr7  110454432      110593360  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67287592       67476723     NM_000695       ALDH3B2
1   chr11   67287592       67476723     NM_000852         GSTP1
3   chr11   67287592       67476723  NM_001166102        NDUFV1
4   chr11   67287592       67476723  NM_001243750         NUDT8
5   chr11   67287592       67476723  NM_001318496         CABP2
6   chr11   67287592       67476723     NM_005995         TBX10
7   chr11   67287592       67476723     NM_080658          ACY3
9   chr11   67287592       67476723     NR_033791        DOC2GP
10  chr11   67287592       67476723     NR_130935      C11orf72
11  chr16   16371957       16484312  NM_001004067         NOMO3
12  chr16   16371957       16484312  NM_001282511        NPIPA8
13  chr16   16371957       16484312     NR_036140     MIR3179-1
14  chr16   16371957       16484312     NR_036141     MIR3180-1
15  chr16   16371957       16484312     NR_036142     MIR3180-2
16  chr16   16371957       16484312     NR_036447        PKD1P1
17  chr16   16371957       16484312     NR_103772  LOC100288162
18  chr16   16371957       16484312     NR_106766     MIR6511A1
19  chr16   16371957       16484312     NR_106971     MIR6511A4
20  chr16   16371957       16484312     NR_107060     MIR6770-2
21  chr16   16371957       16484312     NR_128713     MIR3670-4
22   chr3   76813907       77480348  NM_001128929         ROBO2
24   chr6   94371557       94512670     NR_015362          TSG1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   72353735       72557026     NM_173808       NEGR1
1   chr10   81517922       81725278     NM_003019       SFTPD
2   chr10   81517922       81725278     NR_002724       MBL1P
3   chr10   81517922       81725278     NR_029407   LOC642361
4   chr10   81517922       81725278     NR_033857     BMS1P21
5   chr10   81517922       81725278     NR_120611  NUTM2B-AS1
8   chr14   21709149       21991368  NM_001163380       RAB2B
9   chr14   21709149       21991368  NM_001170629        CHD8
10  chr14   21709149       21991368  NM_001303523        TOX4
11  chr14   21709149       21991368     NM_007192     SUPT16H
12  chr14   21709149       21991368     NM_019852      METTL3
13  chr14   21709149       21991368     NM_020366     RPGRIP1
15  chr14   21709149       21991368     NM_031314      HNRNPC
17  chr14   21709149       21991368     NR_002916      SNORD8
18  chr14   21709149       21991368     NR_003029      SNORD9
19  chr14   21709149       21991368     NR_111966       SALL2
21   chr2   47042773       47241536  NM_001171506       MCFD2
24   chr2   47042773       47241536  NM_001288951       TTC7A
26   chr2   47042773       47241536     NR_024452   LINC01119
27   chr2   47042773       47241536     NR_034099   LINC01118
28  chr21   17827223       17939759     NR_027790    MIR99AHG
30  chr21   17827223       17939759     NR_029480    MIRLET7C
31  chr21   17827223       17939759     NR_029514      MIR99A
39   chr4   71390669       71595675  NM_001037442       RUFY3
41   chr4   71390669       71595675  NM_001286731        AMTN
43   chr4   71390669       71595675     NM_016519        AMBN
44   chr4   71390669       71595675     NM_020368        UTP3
45   chr4   71390669       71595675     NM_031889        ENAM
46   chr4   71390669       71595675     NM_144646      JCHAIN
47   chr4  129594223      129796738  NM_001287437       JADE1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21799427       21914381  NM_001170629          CHD8
1   chr14   21799427       21914381     NM_007192       SUPT16H
2   chr14   21799427       21914381     NM_020366       RPGRIP1
4   chr14   21799427       21914381     NR_002916        SNORD8
5   chr14   21799427       21914381     NR_003029        SNORD9
6   chr15   28758430       29064039  NM_001282468       GOLGA8M
7   chr15   28758430       29064039     NR_026589       WHAMMP2
8   chr15   28758430       29064039     NR_033351       GOLGA8F
9   chr15   28758430       29064039     NR_033353       GOLGA8G
10  chr15   28758430       29064039     NR_036443       HERC2P9
11  chr15   28758430       29064039     NR_036475  LOC100289656
12  chr15   28758430       29064039     NR_037599     PDCD6IPP2
13  chr19     915553        1793008     NM_000156          GAMT
14  chr19     915553        1793008     NM_000455         STK11
15  chr19     915553        1793008  NM_001001975         ATP5D
16  chr19     915553        1793008     NM_001018         RPS15
17  chr19     915553        1793008  NM_001039848          GPX4
18  chr19     915553        1793008  NM_001080488       ONECUT3
19  chr19     915553        1793008  NM_001100122         SBNO2
20  chr19     915553        1793008  NM_001136139          TCF3
21  chr19     915553        1793008  NM_001174118         MEX3D
22  chr19     915553        1793008  NM_001178002        ATP8B3
23  chr19     915553        1793008  NM_001243079          PLK5
24  chr19     915553        1793008  NM_001258328      ARHGAP45
25  chr19     915553        1793008     NM_001280         CIRBP
26  chr19     915553        1793008  NM_001281454          MBD3
32  chr19     915553        1793008  NM_001316323        POLR2E
34  chr19     915553        1793008     NM_001405         EFNA2
37  chr19     915553        1793008     NM_005224        ARID3A
38  chr19     915553        1793008     NM_005883          APC2
39  chr19     915553        1793008     NM_006830        UQCR11
42  chr19     915553        1793008     NM_017573         PCSK4
43  chr19     915553        1793008     NM_017914      C19orf24
44  chr19     915553        1793008     NM_019112         ABCA7
45  chr19     915553        1793008     NM_024100         WDR18
46  chr19     915553        1793008     NM_024407        NDUFS7
47  chr19     915553        1793008     NM_032551        KISS1R
48  chr19     915553        1793008     NM_032853          MUM1
49  chr19     915553        1793008     NM_033420       TMEM259
50  chr19     915553        1793008     NM_138393         REEP6
51  chr19     915553        1793008     NM_138690        GRIN3B
54  chr19     915553        1793008     NM_152482      C19orf25
55  chr19     915553        1793008     NM_152769         CBARP
56  chr19     915553        1793008     NM_170711        DAZAP1
57  chr19     915553        1793008     NM_177401          MIDN
58  chr19     915553        1793008     NM_201277          CNN2
59  chr19     915553        1793008     NM_213604      ADAMTSL5
62  chr19     915553        1793008     NR_027271     CIRBP-AS1
63  chr19     915553        1793008     NR_125730        RNU6-2
64   chr2  133543891      133732108     NM_207363        NCKAP5
65   chr2  133543891      133732108     NR_135572  LOC101928185
66   chr3  155555526      155666667  NM_001190992       SLC33A1
67   chr3  155555526      155666667     NM_003875          GMPS
68   chr9   41873322       42197858     NR_003670        FGF7P3
69   chr9   41873322       42197858     NR_015363         GLIDR
72   chr9   41873322       42197858     NR_126048  LOC102724238
73   chr9   41873322       42197858     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144962542      145386461  NM_001002810       PDE4DIP
6    chr1  144962542      145386461  NM_001277444         NBPF9
7    chr1  144962542      145386461  NM_001278267        NBPF20
8    chr1  144962542      145386461  NM_001302371        NBPF10
9    chr1  144962542      145386461     NM_004892        SEC22B
11   chr1  144962542      145386461     NM_203458      NOTCH2NL
12   chr1  144962542      145386461     NR_104217       NBPF25P
13   chr1  144962542      145386461     NR_125967  LOC101928979
14  chr14   21772140       22066145  NM_001005465        OR10G3
15  chr14   21772140       22066145  NM_001163380         RAB2B
16  chr14   21772140       22066145  NM_001170629          CHD8
17  chr14   21772140       22066145  NM_001303523          TOX4
18  chr14   21772140       22066145     NM_007192       SUPT16H
19  chr14   21772140       22066145     NM_019852        METTL3
20  chr14   21772140       22066145     NM_020366       RPGRIP1
23  chr14   21772140       22066145     NR_002916        SNORD8
24  chr14   21772140       22066145     NR_003029        SNORD9
25  chr14   21772140       22066145     NR_111966         SALL2
27  chr17   14087899       14238242  NM_001007530        CDRT15
28  chr17   14087899       14238242     NM_001303         COX10
29  chr17   14087899       14238242     NM_006041      HS3ST3B1
30  chr17   14087899       14238242     NR_026880      MGC12916
31   chr5  175373139      175604768  NM_001265615       FAM153B
32   chr5  175373139      175604768     NM_032361         THOC3
33   chr5  175373139      175604768     NR_036494     LOC643201
34   chr5  175373139      175604768     NR_038402  LOC100507387
35   chr5  175373139      175604768     NR_103794  LOC100996385
36   chr7   68611654       69207333  NM_001127231         AUTS2
38   chr7   68611654       69207333     NR_108105  LOC100507468
39   chr7  143039152      143361008     NM_000083         CLCN1
40   chr7  143039152      143361008  NM_001008747       CTAGE15
41   chr7  143039152      143361008  NM_001130025         TCAF2
42   chr7  143039152      143361008  NM_001278297       FAM131B
43   chr7  143039152      143361008  NM_001322263  LOC100507507
44   chr7  143039152      143361008     NM_003461           ZYX
45   chr7  143039152      143361008     NM_005232         EPHA1
48   chr7  143039152      143361008     NM_176883       TAS2R41
49   chr7  143039152      143361008     NM_177437       TAS2R60
50   chr7  143039152      143361008     NR_033897     EPHA1-AS1
51   chr7  143039152      143361008     NR_106952       MIR6892
52   chr7  143039152      143361008     NR_110549       TCAF2P1
53   chr8  110215079      110328531  NM_001128211        NUDCD1
55   chr9   28581729       28717674  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21782347       22183846  NM_001001912         OR4E2
1   chr14   21782347       22183846  NM_001005465        OR10G3
2   chr14   21782347       22183846  NM_001005466        OR10G2
3   chr14   21782347       22183846  NM_001163380         RAB2B
4   chr14   21782347       22183846  NM_001170629          CHD8
5   chr14   21782347       22183846  NM_001303523          TOX4
6   chr14   21782347       22183846  NM_001317107         OR4E1
7   chr14   21782347       22183846     NM_007192       SUPT16H
8   chr14   21782347       22183846     NM_019852        METTL3
9   chr14   21782347       22183846     NM_020366       RPGRIP1
12  chr14   21782347       22183846     NR_002916        SNORD8
13  chr14   21782347       22183846     NR_003029        SNORD9
14  chr14   21782347       22183846     NR_111966         SALL2
16  chr15   78376148       78519616  NM_001101404         SH2D7
17  chr15   78376148       78519616  NM_001199377        ACSBG1
18  chr15   78376148       78519616  NM_001301224          CIB2
19  chr15   78376148       78519616     NM_005530         IDH3A
20  chr20    2975085        4515876     NM_000490           AVP
21  chr20    2975085        4515876     NM_000678        ADRA1D
22  chr20    2975085        4515876     NM_000915           OXT
23  chr20    2975085        4515876  NM_001009984     C20orf194
24  chr20    2975085        4515876  NM_001039140      C20orf27
25  chr20    2975085        4515876  NM_001174089       SLC4A11
27  chr20    2975085        4515876  NM_001197327       HSPA12B
28  chr20    2975085        4515876  NM_001206491          MAVS
29  chr20    2975085        4515876  NM_001207047          ATRN
30  chr20    2975085        4515876  NM_001267584         UBOX5
31  chr20    2975085        4515876  NM_001267623          ITPA
32  chr20    2975085        4515876  NM_001270691          SMOX
33  chr20    2975085        4515876  NM_001282447        ADAM33
34  chr20    2975085        4515876  NM_001282533         LZTS3
35  chr20    2975085        4515876  NM_001287516        CDC25B
39  chr20    2975085        4515876  NM_001321749         RNF24
41  chr20    2975085        4515876  NM_001324191         PANK2
45  chr20    2975085        4515876     NM_001810         CENPB
46  chr20    2975085        4515876     NM_002836         PTPRA
47  chr20    2975085        4515876     NM_015417         SPEF1
48  chr20    2975085        4515876     NM_018347         AP5S1
49  chr20    2975085        4515876     NM_021826       FASTKD5
50  chr20    2975085        4515876     NM_022139         GFRA4
51  chr20    2975085        4515876     NM_023068       SIGLEC1
52  chr20    2975085        4515876     NM_023935        DDRGK1
54  chr20    2975085        4515876     NM_030811        MRPS26
59  chr20    2975085        4515876     NM_178332         GNRH2
60  chr20    2975085        4515876     NR_029519      MIR103A2
61  chr20    2975085        4515876     NR_031722      MIR103B2
62  chr20    2975085        4515876     NR_033917     LINC01433
63  chr20    2975085        4515876     NR_038395     UBOX5-AS1
66  chr20    2975085        4515876     NR_109859  LOC101929125
68   chr6  155391705      155517044     NM_012454         TIAM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   55646527       55777711  NM_001142770        PCDH15
3   chr11  104630830      104788148     NR_034064        CASP12
4   chr11  104630830      104788148     NR_034078     LOC643733
5   chr12   71441999       71704955     NM_004616        TSPAN8
6   chr14   21857218       22012920  NM_001163380         RAB2B
7   chr14   21857218       22012920  NM_001170629          CHD8
8   chr14   21857218       22012920  NM_001303523          TOX4
9   chr14   21857218       22012920     NM_019852        METTL3
12  chr14   21857218       22012920     NR_002916        SNORD8
13  chr14   21857218       22012920     NR_003029        SNORD9
14  chr14   21857218       22012920     NR_111966         SALL2
16   chr2  186608679      186863745     NM_173651         FSIP2
17   chr2  186608679      186863745     NR_144453     FSIP2-AS1
19   chr3  155570157      157338326  NM_001004316         LEKR1
20   chr3  155570157      157338326  NM_001099777        PQLC2L
22   chr3  155570157      157338326  NM_001167911         VEPH1
25   chr3  155570157      157338326  NM_001184717        TIPARP
27   chr3  155570157      157338326  NM_001190992       SLC33A1
29   chr3  155570157      157338326  NM_001308185         CCNL1
30   chr3  155570157      157338326  NM_001308197          SSR3
33   chr3  155570157      157338326  NM_001308217        KCNAB1
35   chr3  155570157      157338326     NM_002852          PTX3
37   chr3  155570157      157338326     NM_003875          GMPS
43   chr3  155570157      157338326     NR_003284       PA2G4P4
45   chr3  155570157      157338326     NR_027954    TIPARP-AS1
46   chr3  155570157      157338326     NR_034007     LINC00880
47   chr3  155570157      157338326     NR_034008     LINC00881
48   chr3  155570157      157338326     NR_038387     LINC00886
49   chr3  155570157      157338326     NR_046617    KCNAB1-AS2
50   chr3  155570157      157338326     NR_046618    KCNAB1-AS1
51   chr3  155570157      157338326     NR_135546  LOC105374177,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21910608       22061991  NM_001005465        OR10G3
1   chr14   21910608       22061991  NM_001163380         RAB2B
2   chr14   21910608       22061991  NM_001303523          TOX4
3   chr14   21910608       22061991     NM_019852        METTL3
5   chr14   21910608       22061991     NR_111966         SALL2
7   chr16   82974685       83099760  NM_001220488         CDH13
9   chr16   82974685       83099760     NR_110937  LOC101928417
10   chr2   97324319       97486308  NM_001293083        FER1L5
11   chr2   97324319       97486308  NM_001322354        LMAN2L
12   chr2   97324319       97486308     NM_017623         CNNM3
13   chr2   97324319       97486308     NM_020184         CNNM4
15   chr2   97324319       97486308     NR_036074       MIR3127
16   chr2  133766704      133927726     NM_207363        NCKAP5
17   chr7      72792         206625     NM_020223        FAM20C
18   chr7      72792         206625     NR_108065  LOC100507642
19   chr7      72792         206625     NR_134324  LOC105375115
20   chr7      72792         206625     NR_134325  LOC102723672,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21866268       22826851  NM_001001912         OR4E2
1   chr14   21866268       22826851  NM_001005465        OR10G3
2   chr14   21866268       22826851  NM_001005466        OR10G2
3   chr14   21866268       22826851  NM_001163380         RAB2B
4   chr14   21866268       22826851  NM_001170629          CHD8
5   chr14   21866268       22826851  NM_001303523          TOX4
6   chr14   21866268       22826851  NM_001317107         OR4E1
7   chr14   21866268       22826851     NM_019852        METTL3
10  chr14   21866268       22826851     NR_111966         SALL2
12  chr14   21856374       22027028  NM_001163380         RAB2B
13  chr14   21856374       22027028  NM_001170629          CHD8
14  chr14   21856374       22027028  NM_001303523          TOX4
15  chr14   21856374       22027028     NM_019852        METTL3
18  chr14   21856374       22027028     NR_002916        SNORD8
19  chr14   21856374       22027028     NR_003029        SNORD9
20  chr14   21856374       22027028     NR_111966         SALL2
22  chr15   53004546       53185741     NM_004498       ONECUT1
24   chr2   97191711       97727703  NM_001115016        KANSL3
25   chr2   97191711       97727703  NM_001122646       FAM178B
27   chr2   97191711       97727703  NM_001293083        FER1L5
28   chr2   97191711       97727703  NM_001319085        ARID5A
30   chr2   97191711       97727703  NM_001322354        LMAN2L
31   chr2   97191711       97727703     NM_016466       ANKRD39
33   chr2   97191711       97727703     NM_017623         CNNM3
34   chr2   97191711       97727703     NM_017789        SEMA4C
35   chr2   97191711       97727703     NM_020184         CNNM4
37   chr2   97191711       97727703     NM_144994       ANKRD23
38   chr2   97191711       97727703     NR_036074       MIR3127
40   chr2   97191711       97727703     NR_110209  LOC101927053
41   chr2   97191711       97727703     NR_135564  LOC105373496
42  chr22   17190726       17328151     NM_175878          XKR3
43  chr22   17190726       17328151     NR_003607       HSFY1P1
44  chr22   17190726       17328151     NR_134584  LOC101929350
45   chr9   30387505       31009024     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  143748875      144230619  NM_001123068   PPIAL4G
1    chr1  143748875      144230619  NM_001278267    NBPF20
2    chr1  143748875      144230619  NM_001287385    FAM72C
3    chr1  143748875      144230619  NM_001345942    FAM72D
8   chr10   67596036       67862465  NM_001127384    CTNNA3
10  chr16   68559053       68747051  NM_001305204     ZFP90
12  chr16   68559053       68747051  NM_001317195      CDH3
13   chr5      91678         250307  NM_001080478   LRRC14B
14   chr5      91678         250307     NM_004168      SDHA
15   chr5      91678         250307     NM_052909  PLEKHG4B
16   chr5      91678         250307     NM_145265   CCDC127,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  220025843      220152408     NM_004446       EPRS
1    chr1  220025843      220152408     NR_002753    RNU5F-1
2    chr1  220025843      220152408     NR_046437   SLC30A10
3   chr13   46926685       47130072  NM_001164213      LRCH1
4   chr13   46926685       47130072  NM_001286761     RUBCNL
7   chr13   46926685       47130072     NR_120426  LINC01198
8   chr14   21874954       21989963  NM_001163380      RAB2B
9   chr14   21874954       21989963  NM_001170629       CHD8
10  chr14   21874954       21989963  NM_001303523       TOX4
11  chr14   21874954       21989963     NM_019852     METTL3
14  chr14   21874954       21989963     NR_111966      SALL2
16  chr15   20933786       21058574  NM_001277303     POTEB2
17  chr15   20933786       21058574     NM_207355     POTEB3
18  chr15   20933786       21058574     NR_027992     NBEAP1
19  chr15   20933786       21058574     NR_036062  MIR3118-2
21   chr2   82844333       83347955     NR_033423     DHFRP3
22   chr2  110176078      110296564  NM_001099289     SH3RF3
23  chr20   14696577       14802821     NM_080676    MACROD2
24   chr4   69252623       69396091     NM_014058  TMPRSS11E
25   chr6  162598136      162723151     NM_013988      PARK2
26   chr7   75323099       75487148  NM_001243198       HIP1
27   chr7   75323099       75487148     NM_002991      CCL24
28   chr7   75323099       75487148     NM_006072      CCL26,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143754078      145097187  NM_001002810       PDE4DIP
3    chr1  143754078      145097187  NM_001123068       PPIAL4G
4    chr1  143754078      145097187  NM_001135789       PPIAL4C
9    chr1  143754078      145097187  NM_001277444         NBPF9
10   chr1  143754078      145097187  NM_001278267        NBPF20
11   chr1  143754078      145097187  NM_001287385        FAM72C
12   chr1  143754078      145097187  NM_001345942        FAM72D
15   chr1  143754078      145097187     NM_004892        SEC22B
18   chr1  143754078      145097187     NR_003242        PFN1P2
19   chr1  143754078      145097187     NR_024511     LINC00623
21   chr1  143754078      145097187     NR_102405         NBPF8
22   chr1  143754078      145097187     NR_111953     LINC00869
24  chr14   37619780       37839727  NM_001171170      SLC25A21
25  chr14   37619780       37839727  NM_001195296        MIPOL1
26  chr14   37619780       37839727     NR_033240  SLC25A21-AS1
27  chr16   78967583       79081036     NM_016373          WWOX
28   chr5   82377783       82478547  NM_001318012         XRCC4
30   chr6  129263866      130857928  NM_001007102       L3MBTL3
31   chr6  129263866      130857928  NM_001010876       TMEM244
32   chr6  129263866      130857928  NM_001017373         SAMD3
33   chr6  129263866      130857928  NM_001079823         LAMA2
35   chr6  129263866      130857928  NM_001258276      TMEM200A
40   chr6  129263866      130857928     NM_033515      ARHGAP18
42   chr9    5992648        6096084  NM_001017969      KIAA2026
43   chr9    5992648        6096084  NM_001243202        RANBP6
44   chr9    5992648        6096084     NR_039811       MIR4665
45   chr9   28602120       28741472  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   25622637       26245094  NM_001313726      ANO3
1   chr14   21773183       21884039  NM_001170629      CHD8
2   chr14   21773183       21884039     NM_007192   SUPT16H
3   chr14   21773183       21884039     NM_020366   RPGRIP1
5   chr14   21773183       21884039     NR_002916    SNORD8
6   chr14   21773183       21884039     NR_003029    SNORD9
7   chr16   21735738       22449043  NM_001161683      OTOA
8   chr16   21735738       22449043  NM_001164579  C16orf52
9   chr16   21735738       22449043  NM_001258033    POLR3E
10  chr16   21735738       22449043  NM_001310148    NPIPB4
11  chr16   21735738       22449043     NM_001802      CDR2
12  chr16   21735738       22449043     NM_003366    UQCRC2
13  chr16   21735738       22449043     NM_013302     EEF2K
16  chr16   21735738       22449043     NM_173615     VWA3A
17  chr16   21735738       22449043     NM_173806     PDZD9
18  chr16   21735738       22449043     NR_003370    RRN3P1
19  chr16   21735738       22449043     NR_027154    SMG1P1
20  chr16   21735738       22449043     NR_027460    RRN3P3
21  chr16   21735738       22449043     NR_136333   MFSD13B
22   chr9   28571003       28706767  NM_001258282    LINGO2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21849467       22017756  NM_001163380      RAB2B
1   chr14   21849467       22017756  NM_001170629       CHD8
2   chr14   21849467       22017756  NM_001303523       TOX4
3   chr14   21849467       22017756     NM_007192    SUPT16H
4   chr14   21849467       22017756     NM_019852     METTL3
7   chr14   21849467       22017756     NR_002916     SNORD8
8   chr14   21849467       22017756     NR_003029     SNORD9
9   chr14   21849467       22017756     NR_111966      SALL2
11   chr4   69093623       69255046  NM_001031732     YTHDC1
12   chr4   69093623       69255046     NM_182502  TMPRSS11B
13   chr5   99759357       99884696     NM_198507    FAM174A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    5089410        5221737  NM_001253908        AKR1C3
3   chr10    5089410        5221737     NR_027916       AKR1C8P
4   chr12   85439157       85646623  NM_001079910        LRRIQ1
5   chr14   21874125       22377178  NM_001001912         OR4E2
6   chr14   21874125       22377178  NM_001005465        OR10G3
7   chr14   21874125       22377178  NM_001005466        OR10G2
8   chr14   21874125       22377178  NM_001163380         RAB2B
9   chr14   21874125       22377178  NM_001170629          CHD8
10  chr14   21874125       22377178  NM_001303523          TOX4
11  chr14   21874125       22377178  NM_001317107         OR4E1
12  chr14   21874125       22377178     NM_019852        METTL3
15  chr14   21874125       22377178     NR_111966         SALL2
17  chr15   28642348       28749794     NR_039734     MIR4509-3
19   chr2   83326841       85600981  NM_001080824       TRABD2A
20   chr2   83326841       85600981  NM_001135022        ELMOD3
21   chr2   83326841       85600981  NM_001206841        TGOLN2
23   chr2   83326841       85600981     NM_001370         DNAH6
24   chr2   83326841       85600981     NM_003849        SUCLG1
25   chr2   83326841       85600981     NM_017750        RETSAT
26   chr2   83326841       85600981     NM_020122         KCMF1
27   chr2   83326841       85600981     NM_021103        TMSB10
28   chr2   83326841       85600981     NM_031283        TCF7L1
29   chr2   83326841       85600981     NR_003663      FUNDC2P2
30   chr2   83326841       85600981     NR_136323  LOC102724579
31   chr9  116747576      116886462  NM_001318041        ZNF618
32   chr9  116747576      116886462     NM_001633          AMBP
33   chr9  116747576      116886462     NM_138424         KIF12,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143543488      143676364     NR_106967       MIR6077
1    chr1  224690261      225202482  NM_001145154        DNAH14
2    chr1  224690261      225202482  NM_001322302         CNIH3
8   chr14   21816391       21933251  NM_001163380         RAB2B
9   chr14   21816391       21933251  NM_001170629          CHD8
10  chr14   21816391       21933251     NM_007192       SUPT16H
11  chr14   21816391       21933251     NM_020366       RPGRIP1
14  chr14   21816391       21933251     NR_002916        SNORD8
15  chr14   21816391       21933251     NR_003029        SNORD9
16  chr16   15422328       15650861  NM_001128423        MPV17L
17  chr16   15422328       15650861  NM_001142469      C16orf45
18  chr16   15422328       15650861  NM_001277325        NPIPA5
20  chr16   16448709       18722849  NM_001004060         NOMO2
21  chr16   16448709       18722849  NM_001282511        NPIPA8
23  chr16   16448709       18722849     NM_022166         XYLT1
24  chr16   16448709       18722849     NR_003569       ABCC6P1
25  chr16   16448709       18722849     NR_036140     MIR3179-1
26  chr16   16448709       18722849     NR_036142     MIR3180-2
27  chr16   16448709       18722849     NR_036144     MIR3180-3
28  chr16   16448709       18722849     NR_037442     MIR3670-1
29  chr16   16448709       18722849     NR_103772  LOC100288162
30  chr16   16448709       18722849     NR_106971     MIR6511A4
32  chr16   16448709       18722849     NR_107060     MIR6770-2
33  chr16   16448709       18722849     NR_135179  LOC102723692
34  chr16   21784338       22097025  NM_001164579      C16orf52
35  chr16   21784338       22097025  NM_001310148        NPIPB4
36  chr16   21784338       22097025     NM_003366        UQCRC2
37  chr16   21784338       22097025     NM_173806         PDZD9
38  chr16   21784338       22097025     NR_003370        RRN3P1
39   chr7   64173748       64619435  NM_001007253        ERV3-1
40   chr7   64173748       64619435  NM_001160183        ZNF138
41   chr7   64173748       64619435     NM_015852        ZNF117
42   chr7   64173748       64619435     NM_021148        ZNF273
43   chr7   64173748       64619435     NR_033416        CCT6P3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21747055       21997382  NM_001163380      RAB2B
1   chr14   21747055       21997382  NM_001170629       CHD8
2   chr14   21747055       21997382  NM_001303523       TOX4
3   chr14   21747055       21997382     NM_007192    SUPT16H
4   chr14   21747055       21997382     NM_019852     METTL3
5   chr14   21747055       21997382     NM_020366    RPGRIP1
8   chr14   21747055       21997382     NR_002916     SNORD8
9   chr14   21747055       21997382     NR_003029     SNORD9
10  chr14   21747055       21997382     NR_111966      SALL2
12  chr15   28157433       28298449     NM_000275       OCA2
14  chr22   20155541       20263390     NM_023004      RTN4R
15  chr22   20155541       20263390     NR_026919  LINC00896
16  chr22   20155541       20263390     NR_031618    MIR1286
17  chr22   20155541       20263390     NR_038460  LOC284865
18   chr3   60176894       60411861  NM_001320899       FHIT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143065623      144512407  NM_001123068       PPIAL4G
1    chr1  143065623      144512407  NM_001135789       PPIAL4C
2    chr1  143065623      144512407  NM_001278267        NBPF20
3    chr1  143065623      144512407  NM_001287385        FAM72C
4    chr1  143065623      144512407  NM_001345942        FAM72D
8    chr1  143065623      144512407     NR_024511     LINC00623
10   chr1  143065623      144512407     NR_104014     LINC01138
11   chr1  143065623      144512407     NR_106967       MIR6077
12   chr1  143065623      144512407     NR_110761  LOC102723769
13   chr1  143065623      144512407     NR_111930  LOC100132057
14   chr1  143065623      144512407     NR_111953     LINC00869
16  chr15   51469032       52123635  NM_001142885         TMOD2
17  chr15   51469032       52123635  NM_001143917        LYSMD2
18  chr15   51469032       52123635  NM_001174117         DMXL2
19  chr15   51469032       52123635  NM_001330297          GLDN
20  chr15   51469032       52123635     NM_013243          SCG3
21  chr15   51469032       52123635     NM_014547         TMOD3
22  chr15   51469032       52123635     NM_031226       CYP19A1
25  chr15   51469032       52123635     NR_039863       MIR4713
26  chr15   51469032       52123635     NR_107012     MIR7973-1
27  chr15   51469032       52123635     NR_107013     MIR7973-2
28  chr16   83950632       84256780  NM_001080442       SLC38A8
29  chr16   83950632       84256780  NM_001145400         ADAD2
30  chr16   83950632       84256780  NM_001146051         HSDL1
31  chr16   83950632       84256780  NM_001243156         TAF1C
32  chr16   83950632       84256780  NM_001318756        DNAAF1
33  chr16   83950632       84256780     NM_003791        MBTPS1
34  chr16   83950632       84256780     NM_019065        NECAB2
35  chr16   83950632       84256780     NM_172347         KCNG4
37  chr16   83950632       84256780     NM_182981        OSGIN1
38   chr4  169220645      170239526  NM_001012967        DDX60L
39   chr4  169220645      170239526  NM_001166108         PALLD
43   chr4  169220645      170239526     NM_017631         DDX60
44   chr4  169220645      170239526     NM_020870        SH3RF1
45   chr4  169220645      170239526     NM_032783          CBR4
46   chr5  127851470      128026158     NM_001999          FBN2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18437522       18581139  NM_001004060         NOMO2
1  chr16   18437522       18581139     NR_036140     MIR3179-1
2  chr16   18437522       18581139     NR_036142     MIR3180-2
3  chr16   18437522       18581139     NR_036144     MIR3180-3
4  chr16   18437522       18581139     NR_037442     MIR3670-1
5  chr16   18437522       18581139     NR_103772  LOC100288162
6  chr16   18437522       18581139     NR_106971     MIR6511A4
7  chr16   18437522       18581139     NR_107060     MIR6770-2
8  chr16   76613262       76747289     NR_110934  LOC101928203
9   chr6  162832540      163129773     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate    tx_name     gene_name
0   chr12   72602837       72918777  NM_013381         TRHDE
1   chr12   72602837       72918777  NR_026836     TRHDE-AS1
3   chr20   14457970       14993794  NM_080676       MACROD2
4   chr20   14457970       14993794  NR_037841   MACROD2-AS1
6   chr20   14457970       14993794  NR_104193   MACROD2-IT1
7   chr22   17211919       17352872  NM_175878          XKR3
8   chr22   17211919       17352872  NR_003607       HSFY1P1
9   chr22   17211919       17352872  NR_134584  LOC101929350
10   chr4    3900134        4013784  NR_130741       FAM86EP,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21775652       22179683  NM_001001912      OR4E2
1   chr14   21775652       22179683  NM_001005465     OR10G3
2   chr14   21775652       22179683  NM_001005466     OR10G2
3   chr14   21775652       22179683  NM_001163380      RAB2B
4   chr14   21775652       22179683  NM_001170629       CHD8
5   chr14   21775652       22179683  NM_001303523       TOX4
6   chr14   21775652       22179683  NM_001317107      OR4E1
7   chr14   21775652       22179683     NM_007192    SUPT16H
8   chr14   21775652       22179683     NM_019852     METTL3
9   chr14   21775652       22179683     NM_020366    RPGRIP1
12  chr14   21775652       22179683     NR_002916     SNORD8
13  chr14   21775652       22179683     NR_003029     SNORD9
14  chr14   21775652       22179683     NR_111966      SALL2
16   chr3   41324879       41470309  NM_001322500       ULK4
18   chr7  110501517      110644905  NM_001244606     IMMP2L
20   chr9   14845719       14998555     NM_144966      FREM1
21   chr9   14845719       14998555     NR_003920  LOC389705,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   72686918       72844189     NM_013381     TRHDE
1   chr14   21811244       22150890  NM_001001912     OR4E2
2   chr14   21811244       22150890  NM_001005465    OR10G3
3   chr14   21811244       22150890  NM_001005466    OR10G2
4   chr14   21811244       22150890  NM_001163380     RAB2B
5   chr14   21811244       22150890  NM_001170629      CHD8
6   chr14   21811244       22150890  NM_001303523      TOX4
7   chr14   21811244       22150890  NM_001317107     OR4E1
8   chr14   21811244       22150890     NM_007192   SUPT16H
9   chr14   21811244       22150890     NM_019852    METTL3
10  chr14   21811244       22150890     NM_020366   RPGRIP1
13  chr14   21811244       22150890     NR_002916    SNORD8
14  chr14   21811244       22150890     NR_003029    SNORD9
15  chr14   21811244       22150890     NR_111966     SALL2
17   chr5   63804329       64491442  NM_001029875    RGS7BP
18   chr5   63804329       64491442  NM_001164442   FAM159B
19   chr5   63804329       64491442  NM_001297645     CWC27
22   chr5   63804329       64491442     NM_173829  SREK1IP1
24   chr5   63804329       64491442     NR_135689   ADAMTS6
25   chr8   48491848       48621418  NM_001080394     SPIDR
26   chr9   17201603       17347028  NM_001114395     CNTLN,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11    6715279        6860601  NM_001004489    OR2AG1
1   chr11    6715279        6860601  NM_001004490    OR2AG2
2   chr11    6715279        6860601     NM_003696     OR6A2
3   chr11    6715279        6860601     NR_003945    GVINP1
4   chr14   21901138       22033280  NM_001163380     RAB2B
5   chr14   21901138       22033280  NM_001303523      TOX4
6   chr14   21901138       22033280     NM_019852    METTL3
7   chr14   21901138       22033280     NM_020920      CHD8
9   chr14   21901138       22033280     NR_111966     SALL2
11  chr16    6743887        8033550  NM_001142334    RBFOX1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  145118102      145327026  NM_001277444       NBPF9
1    chr1  145118102      145327026  NM_001278267      NBPF20
2    chr1  145118102      145327026  NM_001302371      NBPF10
3    chr1  145118102      145327026     NM_203458    NOTCH2NL
4    chr1  145118102      145327026     NR_104217     NBPF25P
5   chr14   21720124       21866688  NM_001170629        CHD8
6   chr14   21720124       21866688     NM_007192     SUPT16H
7   chr14   21720124       21866688     NM_020366     RPGRIP1
9   chr14   21720124       21866688     NM_031314      HNRNPC
10  chr14   21720124       21866688     NR_002916      SNORD8
11  chr14   21720124       21866688     NR_003029      SNORD9
12  chr19   21883101       21995984  NM_001256650       ZNF43
14  chr19   21883101       21995984     NM_173531      ZNF100
15  chr19   21883101       21995984     NR_024523   LOC641367
16  chr21   13519786       14818308     NR_026916  ANKRD30BP2
17  chr21   13519786       14818308     NR_036164   MIR3156-3
18   chr5   17749562       17875607     NR_134286   LOC646241
20   chr8    4214417        4378382     NM_033225       CSMD1
21   chr9   28469128       28714420  NM_001258282      LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28271491       29287828     NM_000275          OCA2
1   chr15   28271491       29287828  NM_001130414         APBA2
2   chr15   28271491       29287828  NM_001282468       GOLGA8M
4   chr15   28271491       29287828     NM_004667         HERC2
5   chr15   28271491       29287828     NR_026589       WHAMMP2
6   chr15   28271491       29287828     NR_033351       GOLGA8F
8   chr15   28271491       29287828     NR_033353       GOLGA8G
10  chr15   28271491       29287828     NR_036443       HERC2P9
11  chr15   28271491       29287828     NR_036475  LOC100289656
12  chr15   28271491       29287828     NR_037599     PDCD6IPP2
13  chr15   28271491       29287828     NR_039734     MIR4509-3
15  chr15   28271491       29287828     NR_047567     GOLGA6L7P
16   chr4    8996285        9327553  NM_001242326      USP17L25
17   chr4    8996285        9327553  NM_001256852      USP17L10
18   chr4    8996285        9327553  NM_001256853      USP17L12
20   chr4    8996285        9327553  NM_001256854      USP17L11
23   chr4    8996285        9327553  NM_001256855      USP17L13
24   chr4    8996285        9327553  NM_001256857      USP17L17
25   chr4    8996285        9327553  NM_001256860      USP17L19
26   chr4    8996285        9327553  NM_001256861      USP17L20
27   chr4    8996285        9327553  NM_001256894      USP17L15,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21779168       22043923  NM_001005465        OR10G3
1   chr14   21779168       22043923  NM_001163380         RAB2B
2   chr14   21779168       22043923  NM_001170629          CHD8
3   chr14   21779168       22043923  NM_001303523          TOX4
4   chr14   21779168       22043923     NM_007192       SUPT16H
5   chr14   21779168       22043923     NM_019852        METTL3
6   chr14   21779168       22043923     NM_020366       RPGRIP1
9   chr14   21779168       22043923     NR_002916        SNORD8
10  chr14   21779168       22043923     NR_003029        SNORD9
11  chr14   21779168       22043923     NR_111966         SALL2
13   chr4     517337         691582     NM_000283         PDE6B
15   chr4     517337         691582  NM_001294341         MFSD7
16   chr4     517337         691582     NM_002477          MYL5
17   chr4     517337         691582     NM_007100         ATP5I
18   chr4     517337         691582     NR_110293          PIGG
20   chr5   18988748       19722710  NM_001291956         CDH18
23   chr5  109843109      110000380  NM_001039763       TMEM232
24   chr5  109843109      110000380     NR_031644      MIR548F3
25   chr5  121033116      121449105  NM_001178102           LOX
28   chr5  121033116      121449105     NM_152546        SRFBP1
29   chr5  121033116      121449105     NM_177478          FTMT
30   chr7   64080242       64215652  NM_001282360        ZNF107
32   chr7   64080242       64215652     NR_106898       MIR6839
33   chr7   64061048       64261526  NM_001160183        ZNF138
34   chr7   64061048       64261526  NM_001282360        ZNF107
36   chr7   64061048       64261526     NR_077227  LOC100128885
38   chr7   64061048       64261526     NR_106898       MIR6839
39   chr8  111920425      112389736     NR_125416     LINC01608
41   chr8  111920425      112389736     NR_125418     LINC01609
42   chr9   38929411       39257954     NM_033655       CNTNAP3
43   chr9  108498705      108957012     NM_018112       TMEM38B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   29809836       30277471  NM_001301025          TJP1
3   chr15   29809836       30277471     NM_015307      FAM189A1
4   chr15   29809836       30277471     NR_135221  LOC100130111
5   chr22   17262304       17391295     NM_175878          XKR3
6   chr22   17262304       17391295     NR_003607       HSFY1P1
7    chr5   19617146       19770457  NM_001291956         CDH18
10   chr9   39101375       39295082     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  134163028      134322419  NM_001080407        GLB1L3
1   chr11  134163028      134322419     NM_054025        B3GAT1
2   chr11  134163028      134322419     NM_138342        GLB1L2
3   chr11  134163028      134322419     NR_033852     LOC283177
4   chr16   18404041       18907094  NM_001004060         NOMO2
5   chr16   18404041       18907094     NM_001019        RPS15A
6   chr16   18404041       18907094  NM_001282511        NPIPA8
7   chr16   18404041       18907094  NM_001313858       ARL6IP1
8   chr16   18404041       18907094     NM_015092          SMG1
10  chr16   18404041       18907094     NR_003569       ABCC6P1
11  chr16   18404041       18907094     NR_036140     MIR3179-1
12  chr16   18404041       18907094     NR_036142     MIR3180-2
13  chr16   18404041       18907094     NR_036144     MIR3180-3
14  chr16   18404041       18907094     NR_037442     MIR3670-1
15  chr16   18404041       18907094     NR_103772  LOC100288162
16  chr16   18404041       18907094     NR_106971     MIR6511A4
17  chr16   18404041       18907094     NR_107060     MIR6770-2
18   chr3  162900959      163478860     NR_033945     LINC01192
19   chr7   64051653       64181660  NM_001282360        ZNF107
20   chr7   64051653       64181660     NR_077227  LOC100128885
22   chr7   64051653       64181660     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1  185963171      186066607     NM_031935        HMCN1
1  chr20   14895884       15054513     NM_080676      MACROD2
2  chr20   14895884       15054513     NR_037841  MACROD2-AS1
4   chr5  104368881      104614494     NR_000039      RAB9BP1
5   chr7   83105353       83312508  NM_001178129       SEMA3E
7   chr9   41582560       41840869     NR_003528      ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21817690       22047352  NM_001005465    OR10G3
1   chr14   21817690       22047352  NM_001163380     RAB2B
2   chr14   21817690       22047352  NM_001170629      CHD8
3   chr14   21817690       22047352  NM_001303523      TOX4
4   chr14   21817690       22047352     NM_007192   SUPT16H
5   chr14   21817690       22047352     NM_019852    METTL3
6   chr14   21817690       22047352     NM_020366   RPGRIP1
9   chr14   21817690       22047352     NR_002916    SNORD8
10  chr14   21817690       22047352     NR_003029    SNORD9
11  chr14   21817690       22047352     NR_111966     SALL2
13  chr16   10531936       10858398  NM_001256160   ATF7IP2
14  chr16   10531936       10858398  NM_001323594     NUBP1
18  chr16   10531936       10858398     NM_001424      EMP2
20  chr16   10531936       10858398     NM_144674     TEKT5
22  chr16   10531936       10858398     NR_134901    TVP23A
23   chr9    9857795       10286220     NM_002839     PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   59975390       60303021  NM_001320674         BNIP2
2   chr15   59975390       60303021     NM_012182         FOXB1
3   chr16   16344600       16453683  NM_001004067         NOMO3
4   chr16   16344600       16453683     NR_036140     MIR3179-1
5   chr16   16344600       16453683     NR_036141     MIR3180-1
6   chr16   16344600       16453683     NR_036142     MIR3180-2
7   chr16   16344600       16453683     NR_036447        PKD1P1
8   chr16   16344600       16453683     NR_103772  LOC100288162
9   chr16   16344600       16453683     NR_106766     MIR6511A1
10  chr16   16344600       16453683     NR_107060     MIR6770-2
11  chr16   16344600       16453683     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68127516       68495906  NM_001127384        CTNNA3
2   chr11   59419618       59630228  NM_001005324        OR10V1
3   chr11   59419618       59630228     NM_001062          TCN1
4   chr11   59419618       59630228  NM_001178040          STX3
5   chr11   59419618       59630228     NM_005142           GIF
6   chr11   59419618       59630228     NM_017840        MRPL16
7   chr11   59419618       59630228     NM_152716         PATL1
8   chr11   59419618       59630228     NR_045005       OR10V2P
9   chr14   21861756       22433050  NM_001001912         OR4E2
10  chr14   21861756       22433050  NM_001005465        OR10G3
11  chr14   21861756       22433050  NM_001005466        OR10G2
12  chr14   21861756       22433050  NM_001163380         RAB2B
13  chr14   21861756       22433050  NM_001170629          CHD8
14  chr14   21861756       22433050  NM_001303523          TOX4
15  chr14   21861756       22433050  NM_001317107         OR4E1
16  chr14   21861756       22433050     NM_019852        METTL3
19  chr14   21861756       22433050     NR_002916        SNORD8
20  chr14   21861756       22433050     NR_111966         SALL2
22  chr15   20679158       20818044  NM_001145004      GOLGA6L6
23  chr15   20679158       20818044     NR_027411      GOLGA8CP
24  chr15   20679158       20818044     NR_036432       HERC2P3
25   chr2    1103894        1311360     NM_018968         SNTG2
26   chr7   63869124       64037019  NM_001130022        ZNF680
28   chr7   63869124       64037019     NR_029404       YWHAEP1
29   chr7   63869124       64037019     NR_077227  LOC100128885,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16365402       16604315  NM_001004067         NOMO3
1   chr16   16365402       16604315  NM_001282511        NPIPA8
2   chr16   16365402       16604315     NR_036140     MIR3179-1
3   chr16   16365402       16604315     NR_036141     MIR3180-1
4   chr16   16365402       16604315     NR_036142     MIR3180-2
5   chr16   16365402       16604315     NR_036447        PKD1P1
6   chr16   16365402       16604315     NR_103772  LOC100288162
7   chr16   16365402       16604315     NR_106766     MIR6511A1
8   chr16   16365402       16604315     NR_106971     MIR6511A4
9   chr16   16365402       16604315     NR_107060     MIR6770-2
10  chr16   16365402       16604315     NR_128713     MIR3670-4
11   chr2   56542081       56644913  NM_001080433       CCDC85A
12  chr21   28123034       28369991     NM_006988       ADAMTS1
13  chr21   28123034       28369991     NM_007038       ADAMTS5
14  chr21   28123034       28369991     NR_039916       MIR4759
15   chr3     771129         902921     NR_110118     LINC01266
16   chr4  167592380      167705832  NM_001204353        SPOCK3
19   chr8   48417565       48928115  NM_001080394         SPIDR
20   chr8   48417565       48928115     NM_003350        UBE2V2
21   chr8   48417565       48928115     NM_005195         CEBPD
22   chr8   48417565       48928115     NM_006904         PRKDC
23   chr8   48417565       48928115     NM_182746          MCM4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89078934       89198422  NM_001143837          NOX4
5   chr15   28137167       29512474     NM_000275          OCA2
6   chr15   28137167       29512474  NM_001130414         APBA2
7   chr15   28137167       29512474  NM_001282468       GOLGA8M
9   chr15   28137167       29512474     NM_004667         HERC2
10  chr15   28137167       29512474     NM_015307      FAM189A1
11  chr15   28137167       29512474     NR_026589       WHAMMP2
12  chr15   28137167       29512474     NR_033351       GOLGA8F
14  chr15   28137167       29512474     NR_033353       GOLGA8G
16  chr15   28137167       29512474     NR_036443       HERC2P9
17  chr15   28137167       29512474     NR_036475  LOC100289656
18  chr15   28137167       29512474     NR_037599     PDCD6IPP2
19  chr15   28137167       29512474     NR_039734     MIR4509-3
21  chr15   28137167       29512474     NR_047567     GOLGA6L7P
22   chr4   69250955       69383097     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102432201      102590830     NR_110211         OLFM3
1    chr1  143691570      143827905  NM_001123068       PPIAL4G
2    chr1  143691570      143827905     NR_104014     LINC01138
3    chr1  143691570      143827905     NR_111930  LOC100132057
4   chr16   21545403       21684289  NM_001077180        METTL9
6   chr16   21545403       21684289     NM_005849         IGSF6
7   chr16   21545403       21684289     NR_110930  LOC101927814
8   chr20   14881543       15196866  NM_001033087       MACROD2
10  chr20   14881543       15196866     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   78990556       79137035     NM_016373          WWOX
1   chr22   17239362       18687138  NM_001037814          GAB4
2   chr22   17239362       18687138  NM_001122731        MICAL3
3   chr22   17239362       18687138  NM_001127649         PEX26
5   chr22   17239362       18687138  NM_001163079         CECR6
6   chr22   17239362       18687138  NM_001193414         TUBA8
8   chr22   17239362       18687138  NM_001244567           BID
11  chr22   17239362       18687138  NM_001270733       BCL2L13
12  chr22   17239362       18687138  NM_001282227         CECR1
14  chr22   17239362       18687138  NM_001288707  LOC101929372
15  chr22   17239362       18687138  NM_001289905        IL17RA
16  chr22   17239362       18687138  NM_001290046         CECR2
18  chr22   17239362       18687138  NM_001303484      SLC25A18
19  chr22   17239362       18687138     NM_001696      ATP6V1E1
22  chr22   17239362       18687138     NM_017414         USP18
23  chr22   17239362       18687138     NM_017829         CECR5
26  chr22   17239362       18687138     NM_175878          XKR3
28  chr22   17239362       18687138     NR_003607       HSFY1P1
29  chr22   17239362       18687138     NR_015352         CECR7
30  chr22   17239362       18687138     NR_024417      FLJ41941
31  chr22   17239362       18687138     NR_024482     CECR5-AS1
32  chr22   17239362       18687138     NR_030378        MIR648
33  chr22   17239362       18687138     NR_036168     MIR3198-1
34  chr22   17239362       18687138     NR_038398         CECR3
36  chr22   17239362       18687138     NR_103718     LINC00528
37  chr22   17239362       18687138     NR_103793  LOC100996342
38  chr22   17239362       18687138     NR_136570  LOC100996415
39  chr22   17239362       18687138     NR_136574  LOC105379550,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2  186525627      186674025  NM_173651         FSIP2
1  chr2  186525627      186674025  NR_110214  LOC101927196
4  chr2  186525627      186674025  NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143062006      146496173  NM_001002810       PDE4DIP
3    chr1  143062006      146496173  NM_001012758        NUDT17
4    chr1  143062006      146496173  NM_001039888      ANKRD34A
5    chr1  143062006      146496173  NM_001097612        GPR89A
6    chr1  143062006      146496173  NM_001101663        NBPF11
7    chr1  143062006      146496173  NM_001123068       PPIAL4G
8    chr1  143062006      146496173  NM_001135789       PPIAL4C
9    chr1  143062006      146496173  NM_001184795        PEX11B
14   chr1  143062006      146496173  NM_001201325         PDZK1
15   chr1  143062006      146496173  NM_001277444         NBPF9
16   chr1  143062006      146496173  NM_001278141        NBPF12
17   chr1  143062006      146496173  NM_001278267        NBPF20
18   chr1  143062006      146496173  NM_001280799       ANKRD35
19   chr1  143062006      146496173  NM_001287385        FAM72C
20   chr1  143062006      146496173  NM_001302371        NBPF10
21   chr1  143062006      146496173  NM_001303040        ITGA10
22   chr1  143062006      146496173  NM_001303456        POLR3C
23   chr1  143062006      146496173  NM_001313972         TXNIP
24   chr1  143062006      146496173  NM_001345942        FAM72D
28   chr1  143062006      146496173     NM_004892        SEC22B
29   chr1  143062006      146496173     NM_005105         RBM8A
30   chr1  143062006      146496173     NM_006099         PIAS3
33   chr1  143062006      146496173     NM_007053         CD160
34   chr1  143062006      146496173     NM_014455        RNF115
36   chr1  143062006      146496173     NM_032305       POLR3GL
37   chr1  143062006      146496173     NM_145277          HFE2
38   chr1  143062006      146496173     NM_153713         LIX1L
39   chr1  143062006      146496173     NM_203458      NOTCH2NL
41   chr1  143062006      146496173     NR_002328        GNRHR2
42   chr1  143062006      146496173     NR_003242        PFN1P2
43   chr1  143062006      146496173     NR_024442     LOC728989
44   chr1  143062006      146496173     NR_024511     LINC00623
47   chr1  143062006      146496173     NR_102405         NBPF8
48   chr1  143062006      146496173     NR_104014     LINC01138
51   chr1  143062006      146496173     NR_104217       NBPF25P
53   chr1  143062006      146496173     NR_106794       MIR6736
54   chr1  143062006      146496173     NR_106967       MIR6077
55   chr1  143062006      146496173     NR_110761  LOC102723769
57   chr1  143062006      146496173     NR_111930  LOC100132057
58   chr1  143062006      146496173     NR_111936       PDZK1P1
59   chr1  143062006      146496173     NR_111953     LINC00869
60   chr1  143062006      146496173     NR_125967  LOC101928979
61   chr1  143062006      146496173     NR_135559  LOC100505824
63  chr15   20645696       20797798  NM_001145004      GOLGA6L6
64  chr15   20645696       20797798     NR_027411      GOLGA8CP
65  chr15   20645696       20797798     NR_036432       HERC2P3
66  chr15   28624413       28732812     NR_033351       GOLGA8F
67  chr15   28624413       28732812     NR_033353       GOLGA8G
68  chr15   28624413       28732812     NR_039734     MIR4509-3
69   chr3   60380016       60528538  NM_001320899          FHIT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21765898       21935936  NM_001163380         RAB2B
1   chr14   21765898       21935936  NM_001170629          CHD8
2   chr14   21765898       21935936     NM_007192       SUPT16H
3   chr14   21765898       21935936     NM_020366       RPGRIP1
6   chr14   21765898       21935936     NR_002916        SNORD8
7   chr14   21765898       21935936     NR_003029        SNORD9
8   chr16   82932389       83040565  NM_001220488         CDH13
10  chr16   82932389       83040565     NR_110937  LOC101928417,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   79098115       79267661  NM_001098816         TENM4
1   chr11   79098115       79267661     NR_030598        MIR708
2   chr11   79098115       79267661     NR_049841       MIR5579
3   chr15   28779096       29057735  NM_001282468       GOLGA8M
4   chr15   28779096       29057735     NR_026589       WHAMMP2
5   chr15   28779096       29057735     NR_036443       HERC2P9
6   chr15   28779096       29057735     NR_036475  LOC100289656
7   chr15   28779096       29057735     NR_037599     PDCD6IPP2
8   chr16   68546980       68665289  NM_001305204         ZFP90
10   chr7  110646896      110991532  NM_001099658         LRRN3
11   chr7  110646896      110991532  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152420327      152703166  NM_001024679       C1orf68
1    chr1  152420327      152703166     NM_014357         LCE2B
2    chr1  152420327      152703166     NM_019060         CRCT1
3    chr1  152420327      152703166     NM_032563         LCE3D
4    chr1  152420327      152703166     NM_178356         LCE4A
5    chr1  152420327      152703166     NM_178428         LCE2A
6    chr1  152420327      152703166     NM_178429         LCE2C
7    chr1  152420327      152703166     NM_178430         LCE2D
8    chr1  152420327      152703166     NM_178431         LCE3A
9    chr1  152420327      152703166     NM_178433         LCE3B
10   chr1  152420327      152703166     NM_178434         LCE3C
11   chr1  152420327      152703166     NM_178435         LCE3E
12   chr1  152420327      152703166     NM_178438         LCE5A
13  chr10   96462117       96629623     NM_000769       CYP2C19
14  chr10   96462117       96629623     NM_000772       CYP2C18
15  chr12   72612978       72903836     NM_013381         TRHDE
16  chr12   72612978       72903836     NR_026836     TRHDE-AS1
18  chr13   63349541       63503394     NR_047029     LINC00448
21  chr16   16393408       16519144  NM_001282511        NPIPA8
22  chr16   16393408       16519144     NR_036140     MIR3179-1
23  chr16   16393408       16519144     NR_036141     MIR3180-1
24  chr16   16393408       16519144     NR_036142     MIR3180-2
25  chr16   16393408       16519144     NR_036447        PKD1P1
26  chr16   16393408       16519144     NR_103772  LOC100288162
27  chr16   16393408       16519144     NR_106766     MIR6511A1
28  chr16   16393408       16519144     NR_106971     MIR6511A4
29  chr16   16393408       16519144     NR_107060     MIR6770-2
30  chr16   16393408       16519144     NR_128713     MIR3670-4
31   chr2   97183084       97433411  NM_001115016        KANSL3
32   chr2   97183084       97433411  NM_001293083        FER1L5
33   chr2   97183084       97433411  NM_001319085        ARID5A
35   chr2   97183084       97433411  NM_001322354        LMAN2L
36   chr2   97183084       97433411     NM_020184         CNNM4
39   chr2   97183084       97433411     NR_135564  LOC105373496
40   chr7  110726206      110846656  NM_001099658         LRRN3
41   chr7  110726206      110846656  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   79055907       80596698     NM_006417         IFI44
1    chr1   79055907       80596698     NM_006820        IFI44L
2    chr1   79055907       80596698     NM_022159        ADGRL4
4   chr12  128526361      128649587     NR_104647  LOC100996679
5   chr12  128526361      128649587     NR_104648  LOC101927694
6   chr14   21790104       21921592  NM_001170629          CHD8
7   chr14   21790104       21921592     NM_007192       SUPT16H
8   chr14   21790104       21921592     NM_020366       RPGRIP1
10  chr14   21790104       21921592     NR_002916        SNORD8
11  chr14   21790104       21921592     NR_003029        SNORD9
12  chr19   33778718       33983936     NM_000285          PEPD
13  chr19   33778718       33983936  NM_001252296         CEBPG
14  chr19   33778718       33983936  NM_001285829         CEBPA
16  chr19   33778718       33983936     NR_026887     CEBPA-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21947506       22199739  NM_001001912         OR4E2
1   chr14   21947506       22199739  NM_001005465        OR10G3
2   chr14   21947506       22199739  NM_001005466        OR10G2
3   chr14   21947506       22199739  NM_001303523          TOX4
4   chr14   21947506       22199739  NM_001317107         OR4E1
5   chr14   21947506       22199739     NM_019852        METTL3
6   chr14   21947506       22199739     NR_111966         SALL2
8   chr22   19934208       21277317     NM_000185      SERPIND1
9   chr22   19934208       21277317     NM_000754          COMT
12  chr22   19934208       21277317  NM_001190326         DGCR8
13  chr22   19934208       21277317  NM_001242313      TMEM191B
14  chr22   19934208       21277317  NM_001243537       CCDC188
15  chr22   19934208       21277317  NM_001256523         ZNF74
16  chr22   19934208       21277317  NM_001278639        RANBP1
19  chr22   19934208       21277317  NM_001283116        TANGO2
20  chr22   19934208       21277317  NM_001293236         MED15
24  chr22   19934208       21277317     NM_001670         ARVCF
25  chr22   19934208       21277317     NM_004782        SNAP29
26  chr22   19934208       21277317     NM_005207          CRKL
28  chr22   19934208       21277317     NM_013373        ZDHHC8
29  chr22   19934208       21277317     NM_015672        RIMBP3
30  chr22   19934208       21277317     NM_022727        TRMT2A
31  chr22   19934208       21277317     NM_023004         RTN4R
32  chr22   19934208       21277317     NM_033257        DGCR6L
33  chr22   19934208       21277317     NM_058004         PI4KA
34  chr22   19934208       21277317     NM_153334        SCARF2
35  chr22   19934208       21277317     NR_003563       PI4KAP1
36  chr22   19934208       21277317     NR_024592     POM121L4P
37  chr22   19934208       21277317     NR_026815      TMEM191A
38  chr22   19934208       21277317     NR_026919     LINC00896
39  chr22   19934208       21277317     NR_029706        MIR185
40  chr22   19934208       21277317     NR_031618       MIR1286
41  chr22   19934208       21277317     NR_031706       MIR1306
42  chr22   19934208       21277317     NR_033825        KLHL22
43  chr22   19934208       21277317     NR_037412       MIR3618
44  chr22   19934208       21277317     NR_038460     LOC284865
45  chr22   19934208       21277317     NR_039918       MIR4761
46  chr22   19934208       21277317     NR_106874       MIR6816
47  chr22   19934208       21277317     NR_136560       FAM230A
48  chr22   19934208       21277317     NR_136569     LOC729461
49  chr22   19934208       21277317     NR_136572  LOC101927859
50   chr4  169226767      169872069  NM_001012967        DDX60L
51   chr4  169226767      169872069  NM_001166108         PALLD
55   chr4  169226767      169872069     NM_017631         DDX60
56   chr7   64043811       64158186  NM_001282360        ZNF107
57   chr7   64043811       64158186     NR_033245     LOC641746
58   chr7   64043811       64158186     NR_077227  LOC100128885
60   chr7   64043811       64158186     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   84024348       84169869  NM_001142699          DLG2
3   chr15   20250726       20838564  NM_001145004      GOLGA6L6
4   chr15   20250726       20838564     NR_027411      GOLGA8CP
5   chr15   20250726       20838564     NR_036432       HERC2P3
6   chr15   20250726       20838564     NR_038836       CHEK2P2
7   chr15   28782435       30338676  NM_001130414         APBA2
8   chr15   28782435       30338676  NM_001282468       GOLGA8M
9   chr15   28782435       30338676  NM_001301025          TJP1
12  chr15   28782435       30338676     NM_015307      FAM189A1
13  chr15   28782435       30338676     NM_138704        NSMCE3
14  chr15   28782435       30338676     NR_026589       WHAMMP2
15  chr15   28782435       30338676     NR_036443       HERC2P9
16  chr15   28782435       30338676     NR_036475  LOC100289656
17  chr15   28782435       30338676     NR_037599     PDCD6IPP2
18  chr15   28782435       30338676     NR_047567     GOLGA6L7P
19  chr15   28782435       30338676     NR_135221  LOC100130111,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143612210      144223321  NM_001123068       PPIAL4G
1    chr1  143612210      144223321  NM_001278267        NBPF20
2    chr1  143612210      144223321  NM_001287385        FAM72C
3    chr1  143612210      144223321  NM_001345942        FAM72D
7    chr1  143612210      144223321     NR_104014     LINC01138
8    chr1  143612210      144223321     NR_106967       MIR6077
9    chr1  143612210      144223321     NR_111930  LOC100132057
11   chr1  144681592      145012232  NM_001002810       PDE4DIP
18   chr1  144681592      145012232  NM_001277444         NBPF9
19   chr1  144681592      145012232  NM_001278267        NBPF20
21   chr1  144681592      145012232     NR_102405         NBPF8
22  chr12   85417255       85533418  NM_001079910        LRRIQ1
23  chr12   85417255       85533418  NM_001100917       TSPAN19
24  chr21   36024397       36273392  NM_001001890         RUNX1
26  chr21   36024397       36273392  NM_001317009         CLIC6
28  chr21   36024397       36273392     NR_024351     LINC00160
29  chr21   36024397       36273392     NR_038885     LINC01426
31  chr22   20557174       20657333     NR_136569     LOC729461
32  chr22   20557174       20657333     NR_136572  LOC101927859
33   chr3   72737287       72878400     NM_018130          SHQ1
34   chr7    4083080        4338147  NM_001079653          SDK1
36   chr7   82878855       84553282  NM_001178129        SEMA3E
37   chr7   82878855       84553282     NM_006080        SEMA3A
39   chr7   82878855       84553282     NR_110079  LOC101927378,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21900204       22018513  NM_001163380         RAB2B
1   chr14   21900204       22018513  NM_001303523          TOX4
2   chr14   21900204       22018513     NM_019852        METTL3
3   chr14   21900204       22018513     NM_020920          CHD8
5   chr14   21900204       22018513     NR_111966         SALL2
7    chr4   93297083       93428053     NM_001510         GRID2
8    chr5  175372120      175766066  NM_001265615       FAM153B
9    chr5  175372120      175766066  NM_001308196         SIMC1
11   chr5  175372120      175766066     NM_032361         THOC3
12   chr5  175372120      175766066     NR_036494     LOC643201
13   chr5  175372120      175766066     NR_038402  LOC100507387
14   chr5  175372120      175766066     NR_103794  LOC100996385
15   chr7   93278507       93452518     NR_039796       MIR4652,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2   76574940       77328293  NM_001330370        LRRTM4
1    chr2   76574940       77328293     NR_110284  LOC101927907
2   chr22   17190329       17345373     NM_175878          XKR3
3   chr22   17190329       17345373     NR_003607       HSFY1P1
4   chr22   17190329       17345373     NR_134584  LOC101929350
5    chr5  120006176      120112307  NM_001300783         PRR16
8    chr6   92074279       92553478     NR_039786       MIR4643
9    chr6   92074279       92553478     NR_104154         CASC6
10   chr7   64046409       64389354  NM_001160183        ZNF138
11   chr7   64046409       64389354  NM_001282360        ZNF107
12   chr7   64046409       64389354     NM_021148        ZNF273
14   chr7   64046409       64389354     NR_077227  LOC100128885
16   chr7   64046409       64389354     NR_106898       MIR6839
17   chr9   30164853       30821549     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   76275434       76493909  NM_001322181       CNTNAP4
2   chr17   78268559       78377417  NM_001256071        RNF213
4   chr17   78268559       78377417     NR_029376  LOC100294362
5    chr2  186139421      186665150     NM_173651         FSIP2
6    chr2  186139421      186665150     NR_110214  LOC101927196
9    chr2  186139421      186665150     NR_144453     FSIP2-AS1
11   chr3   60364942       60495588  NM_001320899          FHIT
12   chr4  161758022      162345774  NM_001128428         FSTL5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21905932       22043319  NM_001005465        OR10G3
1   chr14   21905932       22043319  NM_001163380         RAB2B
2   chr14   21905932       22043319  NM_001303523          TOX4
3   chr14   21905932       22043319     NM_019852        METTL3
5   chr14   21905932       22043319     NR_111966         SALL2
7   chr14   55668310       55814417     NM_017943        FBXO34
9    chr3   76831634       77148301  NM_001128929         ROBO2
11   chr5  114085987      114459690     NR_130785  LOC101927078,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   22352748       22519654     NR_047040  LINC00424
1   chr14   21795211       21987114  NM_001163380      RAB2B
2   chr14   21795211       21987114  NM_001170629       CHD8
3   chr14   21795211       21987114  NM_001303523       TOX4
4   chr14   21795211       21987114     NM_007192    SUPT16H
5   chr14   21795211       21987114     NM_019852     METTL3
6   chr14   21795211       21987114     NM_020366    RPGRIP1
9   chr14   21795211       21987114     NR_002916     SNORD8
10  chr14   21795211       21987114     NR_003029     SNORD9,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12  130222138      130345480     NM_133448   TMEM132D
1   chr14   21725341       22126475  NM_001005465     OR10G3
2   chr14   21725341       22126475  NM_001005466     OR10G2
3   chr14   21725341       22126475  NM_001163380      RAB2B
4   chr14   21725341       22126475  NM_001170629       CHD8
5   chr14   21725341       22126475  NM_001303523       TOX4
6   chr14   21725341       22126475     NM_007192    SUPT16H
7   chr14   21725341       22126475     NM_019852     METTL3
8   chr14   21725341       22126475     NM_020366    RPGRIP1
10  chr14   21725341       22126475     NM_031314     HNRNPC
12  chr14   21725341       22126475     NR_002916     SNORD8
13  chr14   21725341       22126475     NR_003029     SNORD9
14  chr14   21725341       22126475     NR_111966      SALL2
16  chr16   68562106       68967202  NM_001305204      ZFP90
18  chr16   68562106       68967202  NM_001317184       CDH1
19  chr16   68562106       68967202  NM_001317195       CDH3
20  chr16   68562106       68967202     NM_024562     TANGO6
21  chr16   68562106       68967202     NR_106988  MIR7641-2
22  chr20    8074038        8217749     NM_015192      PLCB1
23  chr20   14711251       14829291     NM_080676    MACROD2
24   chr4   69304783       69769737     NM_001075    UGT2B10
25   chr4   69304783       69769737     NM_001076    UGT2B15
26   chr4   69304783       69769737     NM_001077    UGT2B17
27   chr4   69304783       69769737     NM_014058  TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   89179015       89973203     NR_047021     LINC00433
1   chr13   89179015       89973203     NR_047025     LINC00440
2   chr13   89179015       89973203     NR_047490     LINC00560
3   chr13   89179015       89973203     NR_131229     LINC01047
4   chr15   28738649       29773600  NM_001130414         APBA2
5   chr15   28738649       29773600  NM_001282468       GOLGA8M
6   chr15   28738649       29773600     NM_015307      FAM189A1
7   chr15   28738649       29773600     NM_138704        NSMCE3
8   chr15   28738649       29773600     NR_026589       WHAMMP2
9   chr15   28738649       29773600     NR_033351       GOLGA8F
10  chr15   28738649       29773600     NR_033353       GOLGA8G
11  chr15   28738649       29773600     NR_036443       HERC2P9
12  chr15   28738649       29773600     NR_036475  LOC100289656
13  chr15   28738649       29773600     NR_037599     PDCD6IPP2
14  chr15   28738649       29773600     NR_047567     GOLGA6L7P
15  chr20   23333381       23483197  NM_001283018          NAPB
16  chr20   23333381       23483197  NM_001317019          GZF1
17  chr20   23333381       23483197     NM_005492          CST8
18  chr20   23333381       23483197     NM_013248          NXT1
20  chr20   23333381       23483197     NM_080830         CST11
21  chr20   23333381       23483197     NM_138283         CSTL1
22  chr20   23333381       23483197     NR_109884     LINC01431
23   chr4  121660903      121839346     NM_018699         PRDM5
24   chr5   23821615       24076681     NR_131245       C5orf17,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244977520      245087183  NM_001312871         COX20
2    chr1  244977520      245087183     NM_004501        HNRNPU
4    chr1  244977520      245087183     NR_132782      SNORA100
5   chr11   99243162       99410525  NM_001243270         CNTN5
7   chr15   28307936       29656249     NM_000275          OCA2
8   chr15   28307936       29656249  NM_001130414         APBA2
9   chr15   28307936       29656249  NM_001282468       GOLGA8M
11  chr15   28307936       29656249     NM_004667         HERC2
12  chr15   28307936       29656249     NM_015307      FAM189A1
13  chr15   28307936       29656249     NM_138704        NSMCE3
14  chr15   28307936       29656249     NR_026589       WHAMMP2
15  chr15   28307936       29656249     NR_033351       GOLGA8F
17  chr15   28307936       29656249     NR_033353       GOLGA8G
19  chr15   28307936       29656249     NR_036443       HERC2P9
20  chr15   28307936       29656249     NR_036475  LOC100289656
21  chr15   28307936       29656249     NR_037599     PDCD6IPP2
22  chr15   28307936       29656249     NR_039734     MIR4509-3
24  chr15   28307936       29656249     NR_047567     GOLGA6L7P
25  chr18   19249269       19469818  NM_001308256         ABHD3
26  chr18   19249269       19469818     NM_020774          MIB1
27  chr18   19249269       19469818     NR_029662        MIR1-2
28  chr18   19249269       19469818     NR_029675      MIR133A1
29  chr18   19249269       19469818     NR_031565      MIR320C1
30  chr18   19249269       19469818     NR_110369    MIR133A1HG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21789151       21951872  NM_001163380         RAB2B
1   chr14   21789151       21951872  NM_001170629          CHD8
2   chr14   21789151       21951872  NM_001303523          TOX4
3   chr14   21789151       21951872     NM_007192       SUPT16H
4   chr14   21789151       21951872     NM_020366       RPGRIP1
7   chr14   21789151       21951872     NR_002916        SNORD8
8   chr14   21789151       21951872     NR_003029        SNORD9
9   chr20   14760417       14864797     NM_080676       MACROD2
10   chr5  120506009      120694226     NR_104999  LOC102467226,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21883948       22103172  NM_001005465     OR10G3
1   chr14   21883948       22103172  NM_001005466     OR10G2
2   chr14   21883948       22103172  NM_001163380      RAB2B
3   chr14   21883948       22103172  NM_001170629       CHD8
4   chr14   21883948       22103172  NM_001303523       TOX4
5   chr14   21883948       22103172     NM_019852     METTL3
8   chr14   21883948       22103172     NR_111966      SALL2
10  chr15   98198455       98500548     NR_024172  LINC00923
11   chr3   85392139       85656894  NM_001167675      CADM2
13   chr3   85392139       85656894     NR_049870    MIR5688,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  135279469      135410439     NM_000773        CYP2E1
1   chr10  135279469      135410439  NM_001143763         SYCE1
4   chr10  135279469      135410439     NR_002934        SCART1
5   chr10  135279469      135410439     NR_033789        SPRNP1
6   chr15   28433815       28564785     NM_004667         HERC2
7   chr15   82862669       83152004  NM_001164465     GOLGA6L10
8   chr15   82862669       83152004  NM_001291420      GOLGA6L9
11  chr15   82862669       83152004     NR_004847      UBE2Q2P2
12  chr15   82862669       83152004     NR_026811     GOLGA2P10
14  chr15   82862669       83152004     NR_045529     ADAMTS7P1
15  chr15   82862669       83152004     NR_102747     LOC727751
17  chr15   82862669       83152004     NR_111962    GOLGA6L17P
18  chr15   82862669       83152004     NR_120378  LOC102724034
19  chr20   14448656       14735353     NM_080676       MACROD2
20  chr20   14448656       14735353     NR_104193   MACROD2-IT1
21  chr20   14778038       14889488     NM_080676       MACROD2
22  chr20   14778038       14889488     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56496229       56614601  NM_001142770        PCDH15
3    chr2  186557540      186730644     NM_173651         FSIP2
4    chr2  186557540      186730644     NR_110214  LOC101927196
7    chr2  186557540      186730644     NR_144453     FSIP2-AS1
9   chr20   14770162       15035569     NM_080676       MACROD2
10  chr20   14770162       15035569     NR_037841   MACROD2-AS1
12   chr6   92087228       92300880     NR_039786       MIR4643
13   chr9   44299053       44477008     NR_121564  LOC101927827
14   chr9   44299053       44477008     NR_126050  LOC103908605,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1  144996491      145108641  NM_001195260      PDE4DIP
2   chr1  144996491      145108641  NM_001277444        NBPF9
3   chr1  144996491      145108641  NM_001278267       NBPF20
4   chr1  144996491      145108641     NM_004892       SEC22B
6   chr5   19638041       19792051  NM_001291956        CDH18
9   chr9    4479566        4712940  NM_001039395      SPATA6L
10  chr9    4479566        4712940  NM_001199853          AK3
13  chr9    4479566        4712940     NM_004170       SLC1A1
15  chr9    4479566        4712940     NM_017913      CDC37L1
16  chr9    4479566        4712940     NM_203453        PLPP6
17  chr9    4479566        4712940     NR_121597  CDC37L1-AS1
18  chr9   38965624       40559686  NM_001085452    SPATA31A1
20  chr9   38965624       40559686     NM_033655      CNTNAP3
21  chr9   38965624       40559686     NR_003528      ZNF658B
22  chr9   38965624       40559686     NR_026803      FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143146366      144467721  NM_001123068       PPIAL4G
1    chr1  143146366      144467721  NM_001135789       PPIAL4C
2    chr1  143146366      144467721  NM_001278267        NBPF20
3    chr1  143146366      144467721  NM_001287385        FAM72C
4    chr1  143146366      144467721  NM_001345942        FAM72D
8    chr1  143146366      144467721     NR_024511     LINC00623
10   chr1  143146366      144467721     NR_104014     LINC01138
11   chr1  143146366      144467721     NR_106967       MIR6077
12   chr1  143146366      144467721     NR_110761  LOC102723769
13   chr1  143146366      144467721     NR_111930  LOC100132057
14   chr1  143146366      144467721     NR_111953     LINC00869
16  chr16   31913357       33331478  NM_001205259      TP53TG3C
19  chr16   31913357       33331478  NM_001243722      TP53TG3D
20  chr16   31913357       33331478  NM_001265588        ZNF267
21  chr16   31913357       33331478  NM_001330061      TP53TG3E
24  chr16   31913357       33331478  NM_001330066      TP53TG3F
27  chr16   31913357       33331478     NR_003083      SLC6A10P
28  chr16   31913357       33331478     NR_033866     LOC390705
30  chr16   31913357       33331478     NR_109773       HERC2P4
31  chr16   31913357       33331478     NR_110886       TP53TG3
34  chr16   31913357       33331478     NR_135178  LOC102723753
35  chr17   63580772       63965996  NM_001037325        CEP112
38   chr2  110166037      110421104  NM_001099289        SH3RF3
39   chr2  110166037      110421104  NM_001321504        SEPT10
41   chr2  110166037      110421104     NM_023016        SOWAHC
42   chr3   24638308       24931413  NM_001290216          RARB,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21876364       21984944  NM_001163380     RAB2B
1  chr14   21876364       21984944  NM_001170629      CHD8
2  chr14   21876364       21984944  NM_001303523      TOX4
3  chr14   21876364       21984944     NM_019852    METTL3
6  chr16    6423665        6563017  NM_001308117    RBFOX1
8   chr5   93409261       93553394  NM_001145678  KIAA0825
9   chr5   93409261       93553394  NM_001163418   FAM172A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12771778       12937141  NM_001013631      HNRNPCL1
1    chr1   12771778       12937141  NM_001080830      PRAMEF12
2    chr1   12771778       12937141  NM_001103170       AADACL3
3    chr1   12771778       12937141  NM_001146181      HNRNPCL3
4    chr1   12771778       12937141  NM_001146344      PRAMEF11
5    chr1   12771778       12937141  NM_001294139       PRAMEF1
6    chr1   12771778       12937141  NM_001302551      HNRNPCL4
8    chr1   12771778       12937141     NM_023014       PRAMEF2
9    chr1   12771778       12937141     NM_152290      C1orf158
10  chr13   54823493       55012290     NR_031628       MIR1297
11  chr15   28527612       29106286  NM_001282468       GOLGA8M
12  chr15   28527612       29106286     NM_004667         HERC2
13  chr15   28527612       29106286     NR_026589       WHAMMP2
14  chr15   28527612       29106286     NR_033351       GOLGA8F
16  chr15   28527612       29106286     NR_033353       GOLGA8G
18  chr15   28527612       29106286     NR_036443       HERC2P9
19  chr15   28527612       29106286     NR_036475  LOC100289656
20  chr15   28527612       29106286     NR_037599     PDCD6IPP2
21  chr15   28527612       29106286     NR_039734     MIR4509-3
23  chr15   28527612       29106286     NR_047567     GOLGA6L7P
24   chr2  107677901      108973179  NM_001008743       SULT1C3
25   chr2  107677901      108973179     NM_001056       SULT1C2
26   chr2  107677901      108973179  NM_001305006        SLC5A7
28   chr2  107677901      108973179     NM_182588         RGPD4
29   chr2  107677901      108973179     NR_024439     RGPD4-AS1
30   chr2  107677901      108973179     NR_037191     SULT1C2P1
31   chr2  107677901      108973179     NR_049853      MIR548AU
32   chr2  107677901      108973179     NR_126369        GACAT1
34   chr2  107677901      108973179     NR_131251     LINC01594
35   chr2  107677901      108973179     NR_135071     LINC01593,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143718502      144033564  NM_001123068       PPIAL4G
1    chr1  143718502      144033564  NM_001287385        FAM72C
2    chr1  143718502      144033564  NM_001345942        FAM72D
6    chr1  143718502      144033564     NR_104014     LINC01138
8   chr10   68095362       68273255  NM_001127384        CTNNA3
10  chr11   95867753       95969483     NM_032427         MAML2
11  chr11  132037033      132156521  NM_001048209           NTM
14  chr11  132037033      132156521     NR_046820        NTM-IT
15  chr14   81666786       81780819  NM_001256430         STON2
16  chr14   81666786       81780819  NM_001278940        GTF2A1
19  chr14   81666786       81780819     NR_003021       SNORA79
20  chr14   81666786       81780819     NR_135252  LOC101928504
21  chr18   61787215       61907609     NR_027245     LINC00305
22  chr18   61787215       61907609     NR_033881     LOC284294
23  chr18   61787215       61907609     NR_033983     LINC01538
24  chr20   14544169       14675970     NM_080676       MACROD2
25  chr20   14544169       14675970     NR_104193   MACROD2-IT1
26   chr7   16655371       16877584  NM_001159767          BZW2
27   chr7   16655371       16877584     NM_006408          AGR2
28   chr7   16655371       16877584     NM_014399       TSPAN13
29   chr7   16655371       16877584     NM_020319        ANKMY2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12782087       12979062  NM_001009611       PRAMEF4
1    chr1   12782087       12979062  NM_001012276       PRAMEF8
2    chr1   12782087       12979062  NM_001013631      HNRNPCL1
3    chr1   12782087       12979062  NM_001080830      PRAMEF12
4    chr1   12782087       12979062  NM_001103170       AADACL3
5    chr1   12782087       12979062  NM_001146181      HNRNPCL3
6    chr1   12782087       12979062  NM_001146344      PRAMEF11
7    chr1   12782087       12979062  NM_001294139       PRAMEF1
8    chr1   12782087       12979062  NM_001302551      HNRNPCL4
10   chr1   12782087       12979062     NM_023014       PRAMEF2
11   chr1   12782087       12979062     NM_152290      C1orf158
12  chr10   67726565       67828295  NM_001127384        CTNNA3
14  chr13   53979023       54448334     NR_047488     LINC00558
15  chr14   47749523       47854952  NM_001113498         MDGA2
18  chr16   21559719       21942387  NM_001077180        METTL9
19  chr16   21559719       21942387  NM_001161683          OTOA
21  chr16   21559719       21942387  NM_001310148        NPIPB4
22  chr16   21559719       21942387     NM_005849         IGSF6
25  chr16   21559719       21942387     NR_003370        RRN3P1
26  chr16   21559719       21942387     NR_110930  LOC101927814
27   chr2  110124525      110237978  NM_001099289        SH3RF3
28  chr20   14637791       15328404  NM_001033087       MACROD2
30  chr20   14637791       15328404     NR_037841   MACROD2-AS1
32   chr3   65795348       65984336  NM_001033057         MAGI1
34   chr3   65795348       65984336     NR_046575     MAGI1-AS1
35   chr7   64038387       64140256  NM_001282360        ZNF107
36   chr7   64038387       64140256     NR_033245     LOC641746
37   chr7   64038387       64140256     NR_077227  LOC100128885
39   chr7   64038387       64140256     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  237554864      237811325     NM_001035          RYR2
1    chr1  237554864      237811325     NR_039626       MIR4428
2   chr14   21775576       22409730  NM_001001912         OR4E2
3   chr14   21775576       22409730  NM_001005465        OR10G3
4   chr14   21775576       22409730  NM_001005466        OR10G2
5   chr14   21775576       22409730  NM_001163380         RAB2B
6   chr14   21775576       22409730  NM_001170629          CHD8
7   chr14   21775576       22409730  NM_001303523          TOX4
8   chr14   21775576       22409730  NM_001317107         OR4E1
9   chr14   21775576       22409730     NM_007192       SUPT16H
10  chr14   21775576       22409730     NM_019852        METTL3
11  chr14   21775576       22409730     NM_020366       RPGRIP1
14  chr14   21775576       22409730     NR_002916        SNORD8
15  chr14   21775576       22409730     NR_003029        SNORD9
16  chr14   21775576       22409730     NR_111966         SALL2
18  chr17   78106199       78600014     NM_000199          SGSH
19  chr17   78106199       78600014  NM_001164637         ENDOV
21  chr17   78106199       78600014  NM_001166349      SLC26A11
22  chr17   78106199       78600014  NM_001256071        RNF213
23  chr17   78106199       78600014  NM_001257970        CARD14
24  chr17   78106199       78600014     NM_002522         NPTX1
25  chr17   78106199       78600014     NM_014740        EIF4A3
26  chr17   78106199       78600014     NM_020761         RPTOR
30  chr17   78106199       78600014     NR_029376  LOC100294362
31  chr17   78106199       78600014     NR_039883       MIR4730
33   chr8    6986175        7153561     NR_027000     LINC00965
36   chr9   38960483       39099381     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21849627       22267951  NM_001001912     OR4E2
1   chr14   21849627       22267951  NM_001005465    OR10G3
2   chr14   21849627       22267951  NM_001005466    OR10G2
3   chr14   21849627       22267951  NM_001163380     RAB2B
4   chr14   21849627       22267951  NM_001170629      CHD8
5   chr14   21849627       22267951  NM_001303523      TOX4
6   chr14   21849627       22267951  NM_001317107     OR4E1
7   chr14   21849627       22267951     NM_007192   SUPT16H
8   chr14   21849627       22267951     NM_019852    METTL3
11  chr14   21849627       22267951     NR_002916    SNORD8
12  chr14   21849627       22267951     NR_003029    SNORD9
13  chr14   21849627       22267951     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245006055      245135737  NM_001143943        EFCAB2
2    chr1  245006055      245135737  NM_001312871         COX20
4    chr1  245006055      245135737     NM_004501        HNRNPU
7    chr1  245006055      245135737     NR_111907  LOC101928068
8    chr1  245006055      245135737     NR_132782      SNORA100
9   chr14   21930430       22060760  NM_001005465        OR10G3
10  chr14   21930430       22060760  NM_001163380         RAB2B
11  chr14   21930430       22060760  NM_001303523          TOX4
12  chr14   21930430       22060760     NM_019852        METTL3
14  chr14   21930430       22060760     NR_111966         SALL2
16  chr14   41897851       42302643  NM_001346175         LRFN5
17   chr3   60338653       60835690  NM_001320899          FHIT
18   chr3   60338653       60835690     NR_128708      MIR548BB
19   chr4   94128028       94515715     NM_001510         GRID2
20   chr7  110620921      110889037  NM_001099658         LRRN3
21   chr7  110620921      110889037  NM_001244606        IMMP2L
23   chr7  132742278      132847897  NM_001317178        CHCHD3
25   chr7  132742278      132847897     NR_133931  LOC105375512,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21834918       21965844  NM_001163380        RAB2B
1   chr14   21834918       21965844  NM_001170629         CHD8
2   chr14   21834918       21965844  NM_001303523         TOX4
3   chr14   21834918       21965844     NM_007192      SUPT16H
6   chr14   21834918       21965844     NR_002916       SNORD8
7   chr14   21834918       21965844     NR_003029       SNORD9
8   chr15   36191719       36546696     NR_039735      MIR4510
9   chr20   14727074       16252773  NM_001033087      MACROD2
10  chr20   14727074       16252773     NM_024704       KIF16B
12  chr20   14727074       16252773     NR_037841  MACROD2-AS1
14  chr20   14727074       16252773     NR_130924    LOC613266
16   chr5   18838026       21387946  NM_001291956        CDH18,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143550797      143919187  NM_001123068       PPIAL4G
1    chr1  143550797      143919187  NM_001287385        FAM72C
2    chr1  143550797      143919187  NM_001345942        FAM72D
6    chr1  143550797      143919187     NR_104014     LINC01138
7    chr1  143550797      143919187     NR_106967       MIR6077
8    chr1  143550797      143919187     NR_111930  LOC100132057
10  chr14   21948902       22560975  NM_001001912         OR4E2
11  chr14   21948902       22560975  NM_001005465        OR10G3
12  chr14   21948902       22560975  NM_001005466        OR10G2
13  chr14   21948902       22560975  NM_001303523          TOX4
14  chr14   21948902       22560975  NM_001317107         OR4E1
15  chr14   21948902       22560975     NM_019852        METTL3
16  chr14   21948902       22560975     NR_111966         SALL2
18   chr2  110226529      110354367  NM_001099289        SH3RF3
19   chr2  110226529      110354367  NM_001321504        SEPT10
21   chr3  145839140      145987741     NM_000935         PLOD2
22   chr3  145839140      145987741  NM_001128304        PLSCR4
24   chr5    6111913        6776834  NM_001145161       UBE2QL1
25   chr5    6111913        6776834  NM_001171805         PAPD7
27   chr5    6111913        6776834  NM_001324322        SRD5A1
28   chr5    6111913        6776834     NM_032286         MED10
29   chr5    6111913        6776834     NR_024423     LINC01018
31   chr5    6111913        6776834     NR_028351      FLJ33360
32   chr5    6111913        6776834     NR_037947         NSUN2
33   chr5    6111913        6776834     NR_103771  LOC100505625
34   chr7   18426652       18570363  NM_001204144         HDAC9
43   chr8   87970801       88446216     NM_173538         CNBD1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12759313       12906124  NM_001080830     PRAMEF12
1    chr1   12759313       12906124  NM_001103170      AADACL3
2    chr1   12759313       12906124  NM_001146344     PRAMEF11
3    chr1   12759313       12906124  NM_001294139      PRAMEF1
5    chr1   12759313       12906124     NM_152290     C1orf158
6   chr14   21898730       22135095  NM_001001912        OR4E2
7   chr14   21898730       22135095  NM_001005465       OR10G3
8   chr14   21898730       22135095  NM_001005466       OR10G2
9   chr14   21898730       22135095  NM_001163380        RAB2B
10  chr14   21898730       22135095  NM_001170629         CHD8
11  chr14   21898730       22135095  NM_001303523         TOX4
12  chr14   21898730       22135095     NM_019852       METTL3
15  chr14   21898730       22135095     NR_111966        SALL2
17  chr17   78165841       78276469     NM_000199         SGSH
18  chr17   78165841       78276469  NM_001166349     SLC26A11
19  chr17   78165841       78276469  NM_001256071       RNF213
20  chr17   78165841       78276469  NM_001257970       CARD14
25  chr20   14890297       14999461     NM_080676      MACROD2
26  chr20   14890297       14999461     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   54511467       54744195  NM_001080534        UNC13C
2   chr16   16330628       16453997  NM_001004067         NOMO3
3   chr16   16330628       16453997     NR_036140     MIR3179-1
4   chr16   16330628       16453997     NR_036141     MIR3180-1
5   chr16   16330628       16453997     NR_036142     MIR3180-2
6   chr16   16330628       16453997     NR_036447        PKD1P1
7   chr16   16330628       16453997     NR_103772  LOC100288162
8   chr16   16330628       16453997     NR_106766     MIR6511A1
9   chr16   16330628       16453997     NR_107060     MIR6770-2
10  chr16   16330628       16453997     NR_128713     MIR3670-4
11  chr16   71064471       71345340  NM_001099642         CMTR2
12  chr16   71064471       71345340  NM_001198542         HYDIN
20  chr18   24684548       25115937  NM_001256316         CHST9
21  chr18   24684548       25115937     NR_134589  LOC105372038
22   chr2  234329971      234545595     NM_003648          DGKD
23   chr2  234329971      234545595     NM_018218         USP40
24   chr2  234329971      234545595     NM_019075       UGT1A10
25   chr2  234329971      234545595     NM_019076        UGT1A8
27   chr9   29883993       30462667     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18194657       18481060  NM_001282511        NPIPA8
1   chr16   18194657       18481060     NR_103772  LOC100288162
2   chr16   18194657       18481060     NR_106971     MIR6511A4
3   chr16   18194657       18481060     NR_107060     MIR6770-2
4   chr16   83930002       84060928  NM_001080442       SLC38A8
5   chr16   83930002       84060928     NM_012213         MLYCD
6   chr16   83930002       84060928     NM_019065        NECAB2
7   chr16   83930002       84060928     NM_182981        OSGIN1
8   chr20    8105901        8217417     NM_015192         PLCB1
9   chr22   19925072       21151187     NM_000185      SERPIND1
10  chr22   19925072       21151187     NM_000754          COMT
13  chr22   19925072       21151187  NM_001190326         DGCR8
14  chr22   19925072       21151187  NM_001242313      TMEM191B
15  chr22   19925072       21151187  NM_001243537       CCDC188
16  chr22   19925072       21151187  NM_001256523         ZNF74
17  chr22   19925072       21151187  NM_001278639        RANBP1
20  chr22   19925072       21151187  NM_001282512        TXNRD2
21  chr22   19925072       21151187  NM_001283116        TANGO2
22  chr22   19925072       21151187  NM_001293236         MED15
26  chr22   19925072       21151187     NM_001670         ARVCF
29  chr22   19925072       21151187     NM_013373        ZDHHC8
30  chr22   19925072       21151187     NM_015672        RIMBP3
31  chr22   19925072       21151187     NM_022727        TRMT2A
32  chr22   19925072       21151187     NM_023004         RTN4R
33  chr22   19925072       21151187     NM_033257        DGCR6L
34  chr22   19925072       21151187     NM_058004         PI4KA
35  chr22   19925072       21151187     NM_153334        SCARF2
36  chr22   19925072       21151187     NR_003563       PI4KAP1
37  chr22   19925072       21151187     NR_024592     POM121L4P
38  chr22   19925072       21151187     NR_026815      TMEM191A
39  chr22   19925072       21151187     NR_026919     LINC00896
40  chr22   19925072       21151187     NR_029706        MIR185
41  chr22   19925072       21151187     NR_031618       MIR1286
42  chr22   19925072       21151187     NR_031706       MIR1306
43  chr22   19925072       21151187     NR_033825        KLHL22
44  chr22   19925072       21151187     NR_037412       MIR3618
45  chr22   19925072       21151187     NR_038460     LOC284865
46  chr22   19925072       21151187     NR_039918       MIR4761
47  chr22   19925072       21151187     NR_106874       MIR6816
48  chr22   19925072       21151187     NR_136560       FAM230A
49  chr22   19925072       21151187     NR_136569     LOC729461
50  chr22   19925072       21151187     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21801491       21937436  NM_001163380      RAB2B
1   chr14   21801491       21937436  NM_001170629       CHD8
2   chr14   21801491       21937436     NM_007192    SUPT16H
3   chr14   21801491       21937436     NM_020366    RPGRIP1
6   chr14   21801491       21937436     NR_002916     SNORD8
7   chr14   21801491       21937436     NR_003029     SNORD9
8    chr2   34169065       34349088     NR_126403  LINC01317
9    chr2   34169065       34349088     NR_132381  LINC01318
10   chr8    2081423        2207794     NM_003970      MYOM2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21798874       21936595  NM_001163380     RAB2B
1  chr14   21798874       21936595  NM_001170629      CHD8
2  chr14   21798874       21936595     NM_007192   SUPT16H
3  chr14   21798874       21936595     NM_020366   RPGRIP1
6  chr14   21798874       21936595     NR_002916    SNORD8
7  chr14   21798874       21936595     NR_003029    SNORD9
8   chr7  110611787      111165683  NM_001099658     LRRN3
9   chr7  110611787      111165683  NM_001244606    IMMP2L, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1   75981314       76390610     NM_000016          ACADM
1    chr1   75981314       76390610  NM_001130058        SLC44A5
4    chr1   75981314       76390610     NM_002440           MSH4
5    chr1   75981314       76390610     NM_004582        RABGGTB
6    chr1   75981314       76390610     NM_080868          ASB17
8    chr1   75981314       76390610     NR_002748       SNORD45B
9    chr1   75981314       76390610     NR_002749       SNORD45A
10   chr1   75981314       76390610     NR_003042       SNORD45C
11   chr1   75981314       76390610     NR_130749         DLSTP1
12   chr1  143110838      143253569     NR_110761   LOC102723769
13  chr11    4202462        4304165     NR_047550   LOC100506082
14  chr15   28609920       29861752  NM_001130414          APBA2
15  chr15   28609920       29861752  NM_001282468        GOLGA8M
16  chr15   28609920       29861752     NM_015307       FAM189A1
17  chr15   28609920       29861752     NM_138704         NSMCE3
18  chr15   28609920       29861752     NR_026589        WHAMMP2
19  chr15   28609920       29861752     NR_033351        GOLGA8F
21  chr15   28609920       29861752     NR_033353        GOLGA8G
23  chr15   28609920       29861752     NR_036443        HERC2P9
24  chr15   28609920       29861752     NR_036475   LOC100289656
25  chr15   28609920       29861752     NR_037599      PDCD6IPP2
26  chr15   28609920       29861752     NR_039734      MIR4509-3
28  chr15   28609920       29861752     NR_047567      GOLGA6L7P
29  chr16   15145217       15627387  NM_001128423         MPV17L
30  chr16   15145217       15627387  NM_001142469       C16orf45
31  chr16   15145217       15627387  NM_001270767          NTAN1
32  chr16   15145217       15627387  NM_001277325         NPIPA5
33  chr16   15145217       15627387  NM_001285449         PDXDC1
34  chr16   15145217       15627387  NM_001301064           RRN3
37  chr16   15145217       15627387     NR_037466      MIR3180-4
38  chr16   15145217       15627387     NR_106775      MIR6511B1
39  chr16   15145217       15627387     NR_106965      MIR6511B2
40  chr16   15145217       15627387     NR_123721  PKD1P6-NPIPP1
42  chr16   15145217       15627387     NR_125434   LOC100505915
43   chr2   24963515       25551353  NM_001013663         PTRHD1
44   chr2   24963515       25551353  NM_001198559        DNAJC27
45   chr2   24963515       25551353  NM_001319099          EFR3B
46   chr2   24963515       25551353  NM_001319205           POMC
47   chr2   24963515       25551353  NM_001320613          ADCY3
48   chr2   24963515       25551353  NM_001320892         DNMT3A
50   chr2   24963515       25551353  NM_001322101          CENPO
51   chr2   24963515       25551353     NM_003743          NCOA1
57   chr2   24963515       25551353     NR_034113    DNAJC27-AS1
58   chr2   24963515       25551353     NR_132378      LINC01381
59  chr21   28142437       28454773     NM_006988        ADAMTS1
60  chr21   28142437       28454773     NM_007038        ADAMTS5
61  chr21   28142437       28454773     NR_039916        MIR4759,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81465620       81586761  NM_001278495      NUTM2B
1   chr10   81465620       81586761     NR_029407   LOC642361
2   chr10   81465620       81586761     NR_120611  NUTM2B-AS1
5   chr14   21861857       22144076  NM_001001912       OR4E2
6   chr14   21861857       22144076  NM_001005465      OR10G3
7   chr14   21861857       22144076  NM_001005466      OR10G2
8   chr14   21861857       22144076  NM_001163380       RAB2B
9   chr14   21861857       22144076  NM_001170629        CHD8
10  chr14   21861857       22144076  NM_001303523        TOX4
11  chr14   21861857       22144076  NM_001317107       OR4E1
12  chr14   21861857       22144076     NM_019852      METTL3
15  chr14   21861857       22144076     NR_002916      SNORD8
16  chr14   21861857       22144076     NR_111966       SALL2
18   chr3   60357772       60550259  NM_001320899        FHIT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   23365582       23635817     NR_107021       MIR8054
1   chr11   48265358       48373802  NM_001004702         OR4C3
2   chr11   48265358       48373802  NM_001004725         OR4S1
3   chr11   48265358       48373802  NM_001004726         OR4X1
4   chr11   48265358       48373802  NM_001004727         OR4X2
5   chr11   48265358       48373802  NM_001005513        OR4C45
6    chr2   75891517       76031164  NM_001201334         GCFC2
9   chr22   17206484       17760380  NM_001037814          GAB4
10  chr22   17206484       17760380  NM_001163079         CECR6
11  chr22   17206484       17760380  NM_001282227         CECR1
13  chr22   17206484       17760380  NM_001289905        IL17RA
14  chr22   17206484       17760380     NM_017829         CECR5
17  chr22   17206484       17760380     NM_175878          XKR3
19  chr22   17206484       17760380     NR_003607       HSFY1P1
20  chr22   17206484       17760380     NR_015352         CECR7
21  chr22   17206484       17760380     NR_024482     CECR5-AS1
22  chr22   17206484       17760380     NR_038398         CECR3
23  chr22   17206484       17760380     NR_103793  LOC100996342
24  chr22   17206484       17760380     NR_134584  LOC101929350
25   chr7  110517770      110660895  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21831538       22125614  NM_001005465     OR10G3
1   chr14   21831538       22125614  NM_001005466     OR10G2
2   chr14   21831538       22125614  NM_001163380      RAB2B
3   chr14   21831538       22125614  NM_001170629       CHD8
4   chr14   21831538       22125614  NM_001303523       TOX4
5   chr14   21831538       22125614     NM_007192    SUPT16H
6   chr14   21831538       22125614     NM_019852     METTL3
9   chr14   21831538       22125614     NR_002916     SNORD8
10  chr14   21831538       22125614     NR_003029     SNORD9
11  chr14   21831538       22125614     NR_111966      SALL2
13  chr16   21729437       21860160  NM_001161683       OTOA
14  chr16   21729437       21860160  NM_001310148     NPIPB4
17  chr16   21729437       21860160     NR_003370     RRN3P1
18   chr5   66199412       66380505  NM_001164664      MAST4
23   chr5   66199412       66380505     NR_111908  MAST4-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21849580       22134123  NM_001001912     OR4E2
1   chr14   21849580       22134123  NM_001005465    OR10G3
2   chr14   21849580       22134123  NM_001005466    OR10G2
3   chr14   21849580       22134123  NM_001163380     RAB2B
4   chr14   21849580       22134123  NM_001170629      CHD8
5   chr14   21849580       22134123  NM_001303523      TOX4
6   chr14   21849580       22134123     NM_007192   SUPT16H
7   chr14   21849580       22134123     NM_019852    METTL3
10  chr14   21849580       22134123     NR_002916    SNORD8
11  chr14   21849580       22134123     NR_003029    SNORD9
12  chr14   21849580       22134123     NR_111966     SALL2
14  chr20   14704970       14864579     NM_080676   MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27635523       27768363  NM_001034842        PTCHD3
1   chr11   67258612       67379703     NM_000852         GSTP1
2   chr11   67258612       67379703  NM_001166102        NDUFV1
3   chr11   67258612       67379703  NM_001318496         CABP2
4   chr11   67258612       67379703     NM_004910       PITPNM1
5   chr11   67258612       67379703     NM_005851       CDK2AP2
7   chr11   67258612       67379703     NR_130935      C11orf72
8   chr15   28818561       29824758  NM_001130414         APBA2
9   chr15   28818561       29824758  NM_001282468       GOLGA8M
10  chr15   28818561       29824758     NM_015307      FAM189A1
11  chr15   28818561       29824758     NM_138704        NSMCE3
12  chr15   28818561       29824758     NR_026589       WHAMMP2
13  chr15   28818561       29824758     NR_036443       HERC2P9
14  chr15   28818561       29824758     NR_036475  LOC100289656
15  chr15   28818561       29824758     NR_037599     PDCD6IPP2
16  chr15   28818561       29824758     NR_047567     GOLGA6L7P
17  chr15   41712485       41977892  NM_001080541           MGA
18  chr15   41712485       41977892  NM_001330264         TYRO3
19  chr15   41712485       41977892     NM_002220         ITPKA
21  chr15   41712485       41977892     NM_015138          RTF1
22  chr15   41712485       41977892     NM_015540         RPAP1
23  chr15   41712485       41977892     NM_206961           LTK
24  chr16    6324329        6639391  NM_001308117        RBFOX1
26  chr17   63428772       64779130     NM_000042          APOH
27  chr17   63428772       64779130  NM_001037325        CEP112
30  chr17   63428772       64779130     NM_002737         PRKCA
31  chr17   63428772       64779130     NM_004655         AXIN2
32  chr17   63428772       64779130     NR_110822     PRKCA-AS1
33  chr17   63428772       64779130     NR_131984        CRAT40
34   chr6  155463794      155588615  NM_001001346        CLDN20
35   chr6  155463794      155588615  NM_001010927         TIAM2
37   chr6  155463794      155588615     NM_016020         TFB1M,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12842433       13133338  NM_001009611       PRAMEF4
1    chr1   12842433       13133338  NM_001010889       PRAMEF6
2    chr1   12842433       13133338  NM_001010890       PRAMEF9
3    chr1   12842433       13133338  NM_001012276       PRAMEF8
4    chr1   12842433       13133338  NM_001013407       PRAMEF5
5    chr1   12842433       13133338  NM_001013631      HNRNPCL1
6    chr1   12842433       13133338  NM_001099850      PRAMEF18
7    chr1   12842433       13133338  NM_001100631      PRAMEF22
8    chr1   12842433       13133338  NM_001146181      HNRNPCL3
9    chr1   12842433       13133338  NM_001146344      PRAMEF11
10   chr1   12842433       13133338  NM_001294139       PRAMEF1
11   chr1   12842433       13133338  NM_001302551      HNRNPCL4
12   chr1   12842433       13133338  NM_001306072      PRAMEF26
13   chr1   12842433       13133338  NM_001310134      PRAMEF25
15   chr1   12842433       13133338     NM_023014       PRAMEF2
16  chr14   21782439       21907497  NM_001170629          CHD8
17  chr14   21782439       21907497     NM_007192       SUPT16H
18  chr14   21782439       21907497     NM_020366       RPGRIP1
20  chr14   21782439       21907497     NR_002916        SNORD8
21  chr14   21782439       21907497     NR_003029        SNORD9
22  chr18    8059000        8182135     NM_002845         PTPRM
23  chr20    2987919        3250022     NM_000490           AVP
24  chr20    2987919        3250022     NM_000915           OXT
25  chr20    2987919        3250022  NM_001009984     C20orf194
26  chr20    2987919        3250022  NM_001174089       SLC4A11
28  chr20    2987919        3250022  NM_001267584         UBOX5
29  chr20    2987919        3250022  NM_001267623          ITPA
30  chr20    2987919        3250022  NM_001282533         LZTS3
32  chr20    2987919        3250022     NM_002836         PTPRA
33  chr20    2987919        3250022     NM_021826       FASTKD5
34  chr20    2987919        3250022     NM_023935        DDRGK1
35  chr20    2987919        3250022     NM_030811        MRPS26
39  chr20    2987919        3250022     NM_178332         GNRH2
40  chr20    2987919        3250022     NR_038395     UBOX5-AS1
43  chr20   25334220       25767082  NM_001042472        ABHD12
44  chr20   25334220       25767082  NM_001290261        ZNF337
45  chr20   25334220       25767082  NM_001318226          NINL
48  chr20   25334220       25767082     NM_021067         GINS1
49  chr20   25334220       25767082     NM_152667          NANP
50  chr20   25334220       25767082     NR_026714       FAM182B
52  chr20   25334220       25767082     NR_126465    ZNF337-AS1
55  chr20   25334220       25767082     NR_135006  LOC105372582
56  chr20   25334220       25767082     NR_135512  LOC105379511
57   chr5    3595633        3737069     NM_024337          IRX1
58   chr7   21355341       23018484  NM_001164460       STEAP1B
59   chr7   21355341       23018484  NM_001277115        DNAH11
60   chr7   21355341       23018484  NM_001318095           IL6
61   chr7   21355341       23018484  NM_001326542           SP4
62   chr7   21355341       23018484     NM_012294       RAPGEF5
63   chr7   21355341       23018484     NM_018719        CDCA7L
64   chr7   21355341       23018484     NM_019059         TOMM7
65   chr7   21355341       23018484     NM_032581       FAM126A
67   chr7   21355341       23018484     NR_003075       SNORD93
68   chr7   21355341       23018484     NR_031594       MIR1183
69   chr7   21355341       23018484     NR_038393  LOC100506178
70   chr7   21355341       23018484     NR_122075     LOC401312
71   chr7   21355341       23018484     NR_131935     LOC541472,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12   72698042       72850448     NM_013381         TRHDE
1  chr16   16419768       16631944  NM_001282511        NPIPA8
2  chr16   16419768       16631944     NR_036447        PKD1P1
3  chr16   16419768       16631944     NR_103772  LOC100288162
4  chr16   16419768       16631944     NR_106971     MIR6511A4
5  chr16   16419768       16631944     NR_107060     MIR6770-2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   18502156       18658864  NM_001004060      NOMO2
1  chr16   18502156       18658864     NR_003569    ABCC6P1
2  chr16   18502156       18658864     NR_036140  MIR3179-1
3   chr3   60331525       60445105  NM_001320899       FHIT
4   chr5      90005         192065  NM_001080478    LRRC14B
5   chr5      90005         192065     NM_052909   PLEKHG4B
6   chr7  110536839      110664550  NM_001244606     IMMP2L
8   chr9   38967255       39144764     NM_033655    CNTNAP3
9   chr9   39029766       39307160     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10    7169295        7282875  NM_001018039    SFMBT2
2   chr10    7169295        7282875     NR_132972  SNORD129
3   chr14   21760062       22031541  NM_001163380     RAB2B
4   chr14   21760062       22031541  NM_001170629      CHD8
5   chr14   21760062       22031541  NM_001303523      TOX4
6   chr14   21760062       22031541     NM_007192   SUPT16H
7   chr14   21760062       22031541     NM_019852    METTL3
8   chr14   21760062       22031541     NM_020366   RPGRIP1
11  chr14   21760062       22031541     NR_002916    SNORD8
12  chr14   21760062       22031541     NR_003029    SNORD9
13  chr14   21760062       22031541     NR_111966     SALL2
15   chr5   99821569      100161005     NM_005668   ST8SIA4
16   chr5   99821569      100161005     NM_198507   FAM174A
17   chr5   99821569      100161005     NR_031686   MIR548P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   14643764       14750223     NM_080676       MACROD2
1    chr4  169219169      169323634  NM_001012967        DDX60L
3    chr4  169219169      169323634     NM_017631         DDX60
4    chr6  162449564      162603275     NM_013988         PARK2
5    chr7   93300477       93894881  NM_001317739          BET1
6    chr7   93300477       93894881     NM_004126         GNG11
7    chr7   93300477       93894881     NM_006528         TFPI2
8    chr7   93300477       93894881     NM_021955         GNGT1
9    chr7   93300477       93894881     NR_039796       MIR4652
11   chr7   93300477       93894881     NR_134235  LOC105375401
12   chr8   97772591       98230898     NM_016134           CPQ
13   chr8   97772591       98230898     NR_125390  LOC101927066,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21828775       22007081  NM_001163380     RAB2B
1   chr14   21828775       22007081  NM_001170629      CHD8
2   chr14   21828775       22007081  NM_001303523      TOX4
3   chr14   21828775       22007081     NM_007192   SUPT16H
4   chr14   21828775       22007081     NM_019852    METTL3
7   chr14   21828775       22007081     NR_002916    SNORD8
8   chr14   21828775       22007081     NR_003029    SNORD9
9   chr14   21828775       22007081     NR_111966     SALL2
11  chr16   76234814       76358699  NM_001322181   CNTNAP4
13   chr4  165904238      166073784  NM_001100389   TMEM192
14   chr4  165904238      166073784     NM_152620    TRIM60
15   chr9  116784086      116906198  NM_001318041    ZNF618
16   chr9  116784086      116906198     NM_001633      AMBP
17   chr9  116784086      116906198     NM_138424     KIF12,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21650981       22273438  NM_001001912      OR4E2
1   chr14   21650981       22273438  NM_001005465     OR10G3
2   chr14   21650981       22273438  NM_001005466     OR10G2
3   chr14   21650981       22273438  NM_001163380      RAB2B
4   chr14   21650981       22273438  NM_001170629       CHD8
5   chr14   21650981       22273438  NM_001303523       TOX4
6   chr14   21650981       22273438  NM_001317107      OR4E1
7   chr14   21650981       22273438     NM_007192    SUPT16H
8   chr14   21650981       22273438     NM_019852     METTL3
9   chr14   21650981       22273438     NM_020366    RPGRIP1
11  chr14   21650981       22273438     NM_031314     HNRNPC
13  chr14   21650981       22273438     NR_002916     SNORD8
14  chr14   21650981       22273438     NR_003029     SNORD9
15  chr14   21650981       22273438     NR_038970  LINC00641
17  chr14   21650981       22273438     NR_111966      SALL2
19  chr15   85752231       86001842  NM_001310153   GOLGA6L3
20  chr15   85752231       86001842     NM_006738     AKAP13
21  chr15   85752231       86001842     NR_106993    MIR7706
22  chr19   23690615       23852393     NM_138330     ZNF675
23   chr6   65539944       65640061  NM_001142800        EYS
24   chr7  121666290      121822779  NM_001206838     PTPRZ1
25   chr7  121666290      121822779     NM_005763       AASS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4821898        4932767  NM_001004749        OR51A7
1   chr11    4821898        4932767  NM_001004753        OR51F2
2   chr11    4821898        4932767  NM_001004758        OR51S1
3   chr11    4821898        4932767  NM_001004759        OR51T1
4   chr11    4821898        4932767  NM_001005177        OR52R1
5   chr15   85607748       85708655  NM_001243137         PDE8A
7   chr16   18337840       18631078  NM_001004060         NOMO2
8   chr16   18337840       18631078  NM_001282511        NPIPA8
9   chr16   18337840       18631078     NR_003569       ABCC6P1
10  chr16   18337840       18631078     NR_036140     MIR3179-1
11  chr16   18337840       18631078     NR_036142     MIR3180-2
12  chr16   18337840       18631078     NR_036144     MIR3180-3
13  chr16   18337840       18631078     NR_037442     MIR3670-1
14  chr16   18337840       18631078     NR_103772  LOC100288162
15  chr16   18337840       18631078     NR_106971     MIR6511A4
16  chr16   18337840       18631078     NR_107060     MIR6770-2
17  chr16   61076622       61180694     NR_039624       MIR4426
18   chr9   39107079       39329846     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4185786        4366344     NR_047550  LOC100506082
1   chr14   21746910       21954376  NM_001163380         RAB2B
2   chr14   21746910       21954376  NM_001170629          CHD8
3   chr14   21746910       21954376  NM_001303523          TOX4
4   chr14   21746910       21954376     NM_007192       SUPT16H
5   chr14   21746910       21954376     NM_020366       RPGRIP1
8   chr14   21746910       21954376     NR_002916        SNORD8
9   chr14   21746910       21954376     NR_003029        SNORD9
10  chr21   23436497       23690737     NR_038400     LINC00308
11  chr21   23436497       23690737     NR_109959  LOC101927843
12   chr9    9859337       10066693     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  244992294      245133929  NM_001143943         EFCAB2
2    chr1  244992294      245133929  NM_001312871          COX20
4    chr1  244992294      245133929     NM_004501         HNRNPU
7    chr1  244992294      245133929     NR_111907   LOC101928068
8    chr1  244992294      245133929     NR_132782       SNORA100
9    chr1  244959345      245390300  NM_001143943         EFCAB2
11   chr1  244959345      245390300  NM_001312871          COX20
13   chr1  244959345      245390300     NM_004501         HNRNPU
14   chr1  244959345      245390300     NM_018012         KIF26B
17   chr1  244959345      245390300     NR_111907   LOC101928068
18   chr1  244959345      245390300     NR_132782       SNORA100
19  chr10   67638878       68001031  NM_001127384         CTNNA3
21  chr13   93146363       93361485     NM_004466           GPC5
22  chr13   93146363       93361485     NR_046520       GPC5-AS1
25  chr16   14784210       15220707  NM_001270767          NTAN1
26  chr16   14784210       15220707  NM_001277323         NPIPA3
28  chr16   14784210       15220707  NM_001277324         NPIPA2
30  chr16   14784210       15220707  NM_001285445         PDXDC1
35  chr16   14784210       15220707  NM_001301064           RRN3
37  chr16   14784210       15220707     NM_006985         NPIPA1
38  chr16   14784210       15220707     NM_014287          NOMO1
39  chr16   14784210       15220707     NR_023387        ABCC6P2
40  chr16   14784210       15220707     NR_036140      MIR3179-1
41  chr16   14784210       15220707     NR_036141      MIR3180-1
42  chr16   14784210       15220707     NR_036142      MIR3180-2
43  chr16   14784210       15220707     NR_103772   LOC100288162
44  chr16   14784210       15220707     NR_106970      MIR6511A3
45  chr16   14784210       15220707     NR_107060      MIR6770-2
46  chr16   14784210       15220707     NR_123721  PKD1P6-NPIPP1
48  chr16   14784210       15220707     NR_125434   LOC100505915
49  chr16   14784210       15220707     NR_128713      MIR3670-4
50  chr16   14784210       15220707     NR_133651        PLA2G10
51  chr20   14818818       14951616     NM_080676        MACROD2
52  chr20   14818818       14951616     NR_037841    MACROD2-AS1
54   chr9   31347727       31489163     NR_135134      LINC01243,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   21303989       21564281  NM_001288713     NELL1
1  chr14   21782799       21887918  NM_001170629      CHD8
2  chr14   21782799       21887918     NM_007192   SUPT16H
3  chr14   21782799       21887918     NM_020366   RPGRIP1
5  chr14   21782799       21887918     NR_002916    SNORD8
6  chr14   21782799       21887918     NR_003029    SNORD9
7  chr14   47799628       48029290  NM_001113498     MDGA2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48262869       48858548  NM_001004702         OR4C3
1   chr11   48262869       48858548  NM_001004725         OR4S1
2   chr11   48262869       48858548  NM_001004726         OR4X1
3   chr11   48262869       48858548  NM_001004727         OR4X2
4   chr11   48262869       48858548  NM_001005512        OR4A47
5   chr11   48262869       48858548  NM_001005513        OR4C45
6   chr17   48038815       48263733     NM_000088        COL1A1
7   chr17   48038815       48263733  NM_001199898          PDK2
10  chr17   48038815       48263733  NM_001257359        SAMD14
11  chr17   48038815       48263733     NM_001934          DLX4
12  chr17   48038815       48263733     NM_002204         ITGA3
14  chr17   48038815       48263733     NM_005220          DLX3
15  chr17   48038815       48263733     NM_032595       PPP1R9B
17  chr17   48038815       48263733     NR_024193         HILS1
18  chr17   48038815       48263733     NR_038230     LOC284080
19  chr17   48038815       48263733     NR_135553          SGCA
20  chr18   35113810       35293086     NM_020180         CELF4
21  chr18   35113810       35293086     NR_036202       MIR4318
22   chr2   97200562       99695491  NM_001008215          COA5
23   chr2   97200562       99695491     NM_001079         ZAP70
24   chr2   97200562       99695491  NM_001115016        KANSL3
25   chr2   97200562       99695491  NM_001122646       FAM178B
26   chr2   97200562       99695491  NM_001134224        INPP4A
27   chr2   97200562       99695491  NM_001160154        MGAT4A
28   chr2   97200562       99695491  NM_001164315       ANKRD36
30   chr2   97200562       99695491  NM_001293083        FER1L5
31   chr2   97200562       99695491     NM_001298         CNGA3
32   chr2   97200562       99695491  NM_001319085        ARID5A
34   chr2   97200562       99695491  NM_001320849        FAHD2B
35   chr2   97200562       99695491  NM_001322354        LMAN2L
..    ...        ...            ...           ...           ...
48   chr2   97200562       99695491     NM_025190      ANKRD36B
49   chr2   97200562       99695491     NM_025244        TSGA10
52   chr2   97200562       99695491     NM_144994       ANKRD23
55   chr2   97200562       99695491     NM_207362     KIAA1211L
57   chr2   97200562       99695491     NR_036074       MIR3127
58   chr2   97200562       99695491     NR_038386     LINC01125
60   chr2   97200562       99695491     NR_103732  LOC100506076
64   chr2   97200562       99695491     NR_110209  LOC101927053
65   chr2   97200562       99695491     NR_126337  LOC101927070
66   chr2   97200562       99695491     NR_130704  LOC100506123
69   chr2  242478696      242651357  NM_001164356         THAP4
70   chr2  242478696      242651357  NM_001165031         DTYMK
71   chr2  242478696      242651357  NM_001330161          ING5
75   chr2  242478696      242651357     NM_032515           BOK
76   chr2  242478696      242651357     NM_178326         ATG4B
77   chr2  242478696      242651357     NR_033346       BOK-AS1
78   chr3  155626105      155727231     NM_003875          GMPS
79   chr9   41786550       42747133  NM_001012419     ANKRD20A3
80   chr9   41786550       42747133  NM_001012421     ANKRD20A2
81   chr9   41786550       42747133     NM_199244       FOXD4L4
82   chr9   41786550       42747133     NR_003670        FGF7P3
83   chr9   41786550       42747133     NR_015363         GLIDR
84   chr9   41786550       42747133     NR_121572      GXYLT1P3
87   chr9   41786550       42747133     NR_126048  LOC102724238
88   chr9   41786550       42747133     NR_126049     LOC554249
89   chr9   41786550       42747133     NR_136310  LOC105379252
90   chr9   41858246       42284126     NR_003670        FGF7P3
91   chr9   41858246       42284126     NR_015363         GLIDR
94   chr9   41858246       42284126     NR_126048  LOC102724238
95   chr9   41858246       42284126     NR_126049     LOC554249

[69 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143712450      143951147  NM_001123068       PPIAL4G
1    chr1  143712450      143951147  NM_001287385        FAM72C
2    chr1  143712450      143951147  NM_001345942        FAM72D
6    chr1  143712450      143951147     NR_104014     LINC01138
7    chr1  143712450      143951147     NR_111930  LOC100132057
9   chr11   89096869       89228815  NM_001143837          NOX4
15   chr4  169242173      169426015  NM_001012967        DDX60L
16   chr4  169242173      169426015  NM_001166108         PALLD
18   chr5  175363866      175481946     NM_032361         THOC3
19   chr5  175363866      175481946     NR_103794  LOC100996385
20   chr6    1863333        2316044  NM_001253846          GMDS
22   chr6    1863333        2316044     NR_046229      GMDS-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241715073      241965400     NM_001821          CHML
1    chr1  241715073      241965400     NM_003679           KMO
2    chr1  241715073      241965400     NM_014322          OPN3
3    chr1  241715073      241965400     NM_144625         WDR64
4   chr13   19693490       20604366  NM_001039649         ZMYM5
5   chr13   19693490       20604366  NM_001042414         PSPC1
7   chr13   19693490       20604366  NM_001190964         ZMYM2
9   chr13   19693490       20604366  NM_001271850         TPTE2
10  chr13   19693490       20604366     NM_006001        TUBA3C
11  chr13   19693490       20604366     NM_017520      MPHOSPH8
15  chr13   19693490       20604366     NR_027248     ANKRD26P3
16  chr13   19693490       20604366     NR_034026     LINC00421
17  chr13   19693490       20604366     NR_046988     LINC00350
20  chr13   19693490       20604366     NR_126054  LOC101928697
21  chr14   21832481       22241584  NM_001001912         OR4E2
22  chr14   21832481       22241584  NM_001005465        OR10G3
23  chr14   21832481       22241584  NM_001005466        OR10G2
24  chr14   21832481       22241584  NM_001163380         RAB2B
25  chr14   21832481       22241584  NM_001170629          CHD8
26  chr14   21832481       22241584  NM_001303523          TOX4
27  chr14   21832481       22241584  NM_001317107         OR4E1
28  chr14   21832481       22241584     NM_007192       SUPT16H
29  chr14   21832481       22241584     NM_019852        METTL3
32  chr14   21832481       22241584     NR_002916        SNORD8
33  chr14   21832481       22241584     NR_003029        SNORD9
34  chr14   21832481       22241584     NR_111966         SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   60319208       60424181     NR_026946     LINC00301
1   chr16   14985120       15132402  NM_001270767         NTAN1
2   chr16   14985120       15132402  NM_001285445        PDXDC1
8   chr16   14985120       15132402     NM_006985        NPIPA1
9   chr16   14985120       15132402     NM_014287         NOMO1
10  chr16   14985120       15132402     NR_036140     MIR3179-1
11  chr16   14985120       15132402     NR_036141     MIR3180-1
12  chr16   14985120       15132402     NR_036142     MIR3180-2
13  chr16   14985120       15132402     NR_103772  LOC100288162
14  chr16   14985120       15132402     NR_106970     MIR6511A3
15  chr16   14985120       15132402     NR_107060     MIR6770-2
16  chr16   14985120       15132402     NR_128713     MIR3670-4
17  chr16   18363104       18470966  NM_001282511        NPIPA8
18  chr16   18363104       18470966     NR_103772  LOC100288162
19  chr16   18363104       18470966     NR_106971     MIR6511A4
20  chr20   14628732       14730975     NM_080676       MACROD2
21   chr4   69062825       69301522  NM_001031732        YTHDC1
22   chr4   69062825       69301522     NM_182502     TMPRSS11B
23   chr4   69062825       69301522     NR_015446        FTLP10
24   chr4   69062825       69301522     NR_104048   TMPRSS11BNL
25   chr8    8165717        8267944  NM_001080826         PRAG1
26   chr9   95662834       95842976  NM_001083536          FGD3
28   chr9   95662834       95842976  NM_001287005         SUSD3
30   chr9   95662834       95842976     NR_121565  LOC101927954,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr15   20936522       21548595  NM_001277303       POTEB2
1  chr15   20936522       21548595     NM_207355       POTEB3
2  chr15   20936522       21548595     NR_027992       NBEAP1
3  chr15   20936522       21548595     NR_028506        NF1P2
4  chr15   20936522       21548595     NR_036062    MIR3118-2
5  chr15   20936522       21548595     NR_040094    LINC01193
6  chr15   20936522       21548595     NR_049895    MIR5701-2
8  chr20   14823545       15066334     NM_080676      MACROD2
9  chr20   14823545       15066334     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21893930       22560371  NM_001001912         OR4E2
1   chr14   21893930       22560371  NM_001005465        OR10G3
2   chr14   21893930       22560371  NM_001005466        OR10G2
3   chr14   21893930       22560371  NM_001163380         RAB2B
4   chr14   21893930       22560371  NM_001170629          CHD8
5   chr14   21893930       22560371  NM_001303523          TOX4
6   chr14   21893930       22560371  NM_001317107         OR4E1
7   chr14   21893930       22560371     NM_019852        METTL3
10  chr14   21893930       22560371     NR_111966         SALL2
12  chr15   28644086       28818097     NR_033351       GOLGA8F
13  chr15   28644086       28818097     NR_033353       GOLGA8G
14  chr15   28644086       28818097     NR_039734     MIR4509-3
16  chr16   31867472       33357550  NM_001205259      TP53TG3C
19  chr16   31867472       33357550  NM_001243722      TP53TG3D
20  chr16   31867472       33357550  NM_001265588        ZNF267
21  chr16   31867472       33357550  NM_001330061      TP53TG3E
24  chr16   31867472       33357550  NM_001330066      TP53TG3F
27  chr16   31867472       33357550     NR_003083      SLC6A10P
28  chr16   31867472       33357550     NR_033866     LOC390705
30  chr16   31867472       33357550     NR_109773       HERC2P4
31  chr16   31867472       33357550     NR_110886       TP53TG3
34  chr16   31867472       33357550     NR_135178  LOC102723753
35  chr17    1108298        1237087  NM_001164405        BHLHA9
36  chr17    1108298        1237087  NM_001322841           ABR
38  chr17    1108298        1237087     NM_172367         TUSC5
39   chr7   18416821       18630386  NM_001204144         HDAC9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   15072333       15182718  NM_001270767         NTAN1
1   chr16   15072333       15182718  NM_001285445        PDXDC1
6   chr16   15072333       15182718  NM_001301064          RRN3
8   chr22   17230008       18522661  NM_001037814          GAB4
9   chr22   17230008       18522661  NM_001122731        MICAL3
11  chr22   17230008       18522661  NM_001163079         CECR6
12  chr22   17230008       18522661  NM_001244567           BID
15  chr22   17230008       18522661  NM_001270733       BCL2L13
16  chr22   17230008       18522661  NM_001282227         CECR1
18  chr22   17230008       18522661  NM_001288707  LOC101929372
19  chr22   17230008       18522661  NM_001289905        IL17RA
20  chr22   17230008       18522661  NM_001290046         CECR2
22  chr22   17230008       18522661  NM_001303484      SLC25A18
23  chr22   17230008       18522661     NM_001696      ATP6V1E1
26  chr22   17230008       18522661     NM_017829         CECR5
29  chr22   17230008       18522661     NM_175878          XKR3
31  chr22   17230008       18522661     NR_003607       HSFY1P1
32  chr22   17230008       18522661     NR_015352         CECR7
33  chr22   17230008       18522661     NR_024417      FLJ41941
34  chr22   17230008       18522661     NR_024482     CECR5-AS1
35  chr22   17230008       18522661     NR_030378        MIR648
36  chr22   17230008       18522661     NR_036168     MIR3198-1
37  chr22   17230008       18522661     NR_038398         CECR3
39  chr22   17230008       18522661     NR_103718     LINC00528
40  chr22   17230008       18522661     NR_103793  LOC100996342
41   chr6    4272380        4589047     NR_106988     MIR7641-2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21879926       21981541  NM_001163380     RAB2B
1  chr14   21879926       21981541  NM_001170629      CHD8
2  chr14   21879926       21981541  NM_001303523      TOX4
3  chr14   21879926       21981541     NM_019852    METTL3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21900978       23431584  NM_001001912         OR4E2
1   chr14   21900978       23431584  NM_001005465        OR10G3
2   chr14   21900978       23431584  NM_001005466        OR10G2
3   chr14   21900978       23431584  NM_001039619         PRMT5
4   chr14   21900978       23431584  NM_001126105        SLC7A7
6   chr14   21900978       23431584  NM_001163380         RAB2B
7   chr14   21900978       23431584  NM_001303523          TOX4
8   chr14   21900978       23431584  NM_001317107         OR4E1
9   chr14   21900978       23431584  NM_001318870        MRPL52
10  chr14   21900978       23431584  NM_001329226         LRP10
11  chr14   21900978       23431584     NM_001344          DAD1
12  chr14   21900978       23431584     NM_004995         MMP14
13  chr14   21900978       23431584     NM_005015         OXA1L
14  chr14   21900978       23431584     NM_017815         HAUS4
15  chr14   21900978       23431584     NM_018107         RBM23
16  chr14   21900978       23431584     NM_019852        METTL3
17  chr14   21900978       23431584     NM_020920          CHD8
18  chr14   21900978       23431584     NM_022060         ABHD4
20  chr14   21900978       23431584     NM_173527          REM2
21  chr14   21900978       23431584     NR_039856       MIR4707
23  chr14   21900978       23431584     NR_110002  LOC101926933
24  chr14   21900978       23431584     NR_111966         SALL2
26  chr14   21900978       23431584     NR_120599     PRMT5-AS1
27   chr2  110171455      110359635  NM_001099289        SH3RF3
28   chr2  110171455      110359635  NM_001321504        SEPT10
30   chr7  110636164      110760887  NM_001099658         LRRN3
31   chr7  110636164      110760887  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187235496      187352528     NR_126347     LINC01036
1   chr14   21766610       22220583  NM_001001912         OR4E2
2   chr14   21766610       22220583  NM_001005465        OR10G3
3   chr14   21766610       22220583  NM_001005466        OR10G2
4   chr14   21766610       22220583  NM_001163380         RAB2B
5   chr14   21766610       22220583  NM_001170629          CHD8
6   chr14   21766610       22220583  NM_001303523          TOX4
7   chr14   21766610       22220583  NM_001317107         OR4E1
8   chr14   21766610       22220583     NM_007192       SUPT16H
9   chr14   21766610       22220583     NM_019852        METTL3
10  chr14   21766610       22220583     NM_020366       RPGRIP1
13  chr14   21766610       22220583     NR_002916        SNORD8
14  chr14   21766610       22220583     NR_003029        SNORD9
15  chr14   21766610       22220583     NR_111966         SALL2
17  chr17    5517995        5685150     NR_040000     LOC339166
18   chr4     103083         319216  NM_001039127        ZNF718
19   chr4     103083         319216  NM_001137608        ZNF732
22   chr4     103083         319216     NR_027481       ZNF876P
25   chr4   69182616       69293817  NM_001031732        YTHDC1
26   chr7   64032089       64274139  NM_001160183        ZNF138
27   chr7   64032089       64274139  NM_001282360        ZNF107
28   chr7   64032089       64274139     NR_033245     LOC641746
30   chr7   64032089       64274139     NR_077227  LOC100128885
32   chr7   64032089       64274139     NR_106898       MIR6839
33   chr9   39096774       42530941  NM_001012419     ANKRD20A3
34   chr9   39096774       42530941  NM_001012421     ANKRD20A2
35   chr9   39096774       42530941  NM_001083124     SPATA31A3
36   chr9   39096774       42530941  NM_001085452     SPATA31A1
38   chr9   39096774       42530941  NM_001113541     SPATA31A5
40   chr9   39096774       42530941     NM_015667     SPATA31A7
42   chr9   39096774       42530941     NM_033160        ZNF658
43   chr9   39096774       42530941     NM_033655       CNTNAP3
44   chr9   39096774       42530941     NR_003528       ZNF658B
46   chr9   39096774       42530941     NR_003670        FGF7P3
47   chr9   39096774       42530941     NR_015363         GLIDR
48   chr9   39096774       42530941     NR_026801       FAM74A3
49   chr9   39096774       42530941     NR_026803       FAM74A1
53   chr9   39096774       42530941     NR_121572      GXYLT1P3
56   chr9   39096774       42530941     NR_126048  LOC102724238
57   chr9   39096774       42530941     NR_126049     LOC554249
59   chr9   39096774       42530941     NR_135122  LOC105379450
60   chr9   39096774       42530941     NR_136310  LOC105379252
61   chr9   41901104       42089766     NR_003670        FGF7P3
62   chr9   41901104       42089766     NR_015363         GLIDR
65   chr9   41901104       42089766     NR_126048  LOC102724238
66   chr9   41901104       42089766     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142704319      143932661  NM_001123068       PPIAL4G
1    chr1  142704319      143932661  NM_001287385        FAM72C
2    chr1  142704319      143932661  NM_001345942        FAM72D
6    chr1  142704319      143932661     NR_046228   ANKRD20A12P
7    chr1  142704319      143932661     NR_104014     LINC01138
8    chr1  142704319      143932661     NR_106967       MIR6077
9    chr1  142704319      143932661     NR_110761  LOC102723769
10   chr1  142704319      143932661     NR_111930  LOC100132057
12  chr16   16442228       16571286  NM_001282511        NPIPA8
13  chr16   16442228       16571286     NR_036447        PKD1P1
14  chr16   16442228       16571286     NR_106971     MIR6511A4
15  chr21   17904650       19203172  NM_001100420      C21orf91
16  chr21   17904650       19203172  NM_001130914          BTG3
17  chr21   17904650       19203172  NM_001207064         CXADR
19  chr21   17904650       19203172     NR_027790      MIR99AHG
21  chr21   17904650       19203172     NR_029480      MIRLET7C
22  chr21   17904650       19203172     NR_029514        MIR99A
23  chr21   17904650       19203172     NR_029694      MIR125B2
24  chr21   17904650       19203172     NR_037585     LINC01549
25  chr21   17904650       19203172     NR_038870  C21orf91-OT1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   88026013       88210363     NR_033829     MIR4500HG
1   chr15  100122960      100268183  NM_001130928         MEF2A
2   chr15  100122960      100268183  NM_001284417        LYSMD4
5    chr2  184136974      186681249     NM_173651         FSIP2
6    chr2  184136974      186681249     NM_194250       ZNF804A
7    chr2  184136974      186681249     NR_039638     MIR548AE1
8    chr2  184136974      186681249     NR_110214  LOC101927196
11   chr2  184136974      186681249     NR_136319  LOC105373782
12   chr2  184136974      186681249     NR_144453     FSIP2-AS1
14   chr3     716270         847196     NR_110118     LINC01266
15   chr5  142374925      142575447  NM_001135608      ARHGAP26
16   chr5  142374925      142575447     NR_046816  ARHGAP26-IT1
17   chr9   28152567       28257251  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  165216439      165337863  NM_001174069         LMX1A
2   chr13   80815482       81064479  NM_001318536         SPRY2
5   chr14   21817044       22673679  NM_001001912         OR4E2
6   chr14   21817044       22673679  NM_001005465        OR10G3
7   chr14   21817044       22673679  NM_001005466        OR10G2
8   chr14   21817044       22673679  NM_001163380         RAB2B
9   chr14   21817044       22673679  NM_001170629          CHD8
10  chr14   21817044       22673679  NM_001303523          TOX4
11  chr14   21817044       22673679  NM_001317107         OR4E1
12  chr14   21817044       22673679     NM_007192       SUPT16H
13  chr14   21817044       22673679     NM_019852        METTL3
14  chr14   21817044       22673679     NM_020366       RPGRIP1
17  chr14   21817044       22673679     NR_002916        SNORD8
18  chr14   21817044       22673679     NR_003029        SNORD9
19  chr14   21817044       22673679     NR_111966         SALL2
21  chr19   33724173       33839390  NM_001285829         CEBPA
22  chr19   33724173       33839390     NR_026887     CEBPA-AS1
23   chr2  215423302      215928933     NM_000465         BARD1
24   chr2  215423302      215928933  NM_001080500         VWC2L
25   chr2  215423302      215928933     NM_015657        ABCA12
27   chr2  215423302      215928933     NR_110292  LOC101928103
28   chr7  110654777      113132913  NM_001099658         LRRN3
29   chr7  110654777      113132913  NM_001134468        LSMEM1
30   chr7  110654777      113132913  NM_001146266         GPR85
32   chr7  110654777      113132913  NM_001197079         IFRD1
34   chr7  110654777      113132913  NM_001244606        IMMP2L
35   chr7  110654777      113132913  NM_001287497       TMEM168
37   chr7  110654777      113132913     NM_014705         DOCK4
39   chr7  110654777      113132913     NM_021994        ZNF277
41   chr7  110654777      113132913     NM_152556          BMT2
43   chr7  110654777      113132913     NR_024412     LINC00998
44   chr7  110654777      113132913     NR_103806     DOCK4-AS1
45   chr7  110654777      113132913     NR_110158  LOC101928012
46   chr7  110654777      113132913     NR_110160  LOC100996249
47   chr7  110654777      113132913     NR_110162        HRAT17,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21765189       21942162  NM_001163380     RAB2B
1   chr14   21765189       21942162  NM_001170629      CHD8
2   chr14   21765189       21942162     NM_007192   SUPT16H
3   chr14   21765189       21942162     NM_020366   RPGRIP1
6   chr14   21765189       21942162     NR_002916    SNORD8
7   chr14   21765189       21942162     NR_003029    SNORD9
8   chr15   28304985       28482995     NM_000275      OCA2
10  chr15   28304985       28482995     NM_004667     HERC2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   79032419       79181154     NM_006417         IFI44
1    chr1   79032419       79181154     NM_006820        IFI44L
3   chr14   21759231       21890547  NM_001170629          CHD8
4   chr14   21759231       21890547     NM_007192       SUPT16H
5   chr14   21759231       21890547     NM_020366       RPGRIP1
7   chr14   21759231       21890547     NR_002916        SNORD8
8   chr14   21759231       21890547     NR_003029        SNORD9
9    chr2   34223409       34348748     NR_126403     LINC01317
10   chr2   34223409       34348748     NR_132381     LINC01318
11   chr7  124978248      125102634     NR_110188  LOC101928283
12   chr9   17191794       17452123  NM_001114395         CNTLN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21830724       21962516  NM_001163380         RAB2B
1   chr14   21830724       21962516  NM_001170629          CHD8
2   chr14   21830724       21962516  NM_001303523          TOX4
3   chr14   21830724       21962516     NM_007192       SUPT16H
6   chr14   21830724       21962516     NR_002916        SNORD8
7   chr14   21830724       21962516     NR_003029        SNORD9
8   chr17   63524529       63726345  NM_001037325        CEP112
11  chr17   63524529       63726345     NM_004655         AXIN2
12  chr19   23497463       23746080  NM_001300951         ZNF91
13  chr19   23497463       23746080     NR_126448     LINC01224
14   chr7   18567347       18782971  NM_001204144         HDAC9
23   chr9   41837821       49568982  NM_001012419     ANKRD20A3
25   chr9   41837821       49568982  NM_001012421     ANKRD20A2
27   chr9   41837821       49568982  NM_001145196     SPATA31A6
28   chr9   41837821       49568982  NM_001201380      CNTNAP3B
29   chr9   41837821       49568982     NM_199244       FOXD4L4
30   chr9   41837821       49568982     NR_003670        FGF7P3
31   chr9   41837821       49568982     NR_003674        FGF7P6
32   chr9   41837821       49568982     NR_015363         GLIDR
33   chr9   41837821       49568982     NR_026558        AQP7P3
34   chr9   41837821       49568982     NR_027421        FAM27C
35   chr9   41837821       49568982     NR_027472     LOC642929
36   chr9   41837821       49568982     NR_046175     LOC286297
37   chr9   41837821       49568982     NR_046203     LINC01189
38   chr9   41837821       49568982     NR_103714       FAM27E2
40   chr9   41837821       49568982     NR_111893     CNTNAP3P2
41   chr9   41837821       49568982     NR_121564  LOC101927827
42   chr9   41837821       49568982     NR_121570  LOC101928381
43   chr9   41837821       49568982     NR_121572      GXYLT1P3
45   chr9   41837821       49568982     NR_121606  LOC102723709
48   chr9   41837821       49568982     NR_126048  LOC102724238
50   chr9   41837821       49568982     NR_126049     LOC554249
52   chr9   41837821       49568982     NR_126050  LOC103908605
54   chr9   41837821       49568982     NR_126166       FAM74A7
55   chr9   41837821       49568982     NR_131213   XLOC_007697
56   chr9   41837821       49568982     NR_135136  LOC105376064
57   chr9   41837821       49568982     NR_135597  LOC101928195
58   chr9   41837821       49568982     NR_136299  LOC101929583
59   chr9   41837821       49568982     NR_136310  LOC105379252
61   chr9   41837821       49568982     NR_144466  LOC105379807,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21746751       21929570  NM_001163380         RAB2B
1   chr14   21746751       21929570  NM_001170629          CHD8
2   chr14   21746751       21929570     NM_007192       SUPT16H
3   chr14   21746751       21929570     NM_020366       RPGRIP1
6   chr14   21746751       21929570     NR_002916        SNORD8
7   chr14   21746751       21929570     NR_003029        SNORD9
8   chr17   21233651       21494118  NM_001113434      C17orf51
9   chr17   21233651       21494118  NM_001194958        KCNJ18
10  chr17   21233651       21494118     NM_021012        KCNJ12
11  chr19   47807509       47913732  NM_001009813         MEIS3
12  chr19   47807509       47913732  NM_001271749         C5AR2
16  chr19   47807509       47913732     NM_001736         C5AR1
17  chr19   47807509       47913732     NM_014681         DHX34
19   chr2   36249640       36637327     NM_016441         CRIM1
20   chr2   36249640       36637327     NR_037631  LOC100288911
21   chr4  130523816      130677826     NR_110753  LOC101927282,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1    2837825        3016268     NM_080431       ACTRT2
1    chr1    2837825        3016268     NM_199454       PRDM16
2    chr1    2837825        3016268     NR_015440    LINC00982
4    chr1  102391750      102620173     NR_110211        OLFM3
5   chr12   17195696       17929658     NR_039770      MIR3974
6   chr12   80996756       81130783  NM_001145026        PTPRQ
7   chr12   80996756       81130783     NM_002469         MYF6
8   chr12   80996756       81130783     NM_005593         MYF5
9    chr2   75914076       76040172  NM_001201334        GCFC2
12  chr20   14837522       14957184     NM_080676      MACROD2
13  chr20   14837522       14957184     NR_037841  MACROD2-AS1,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr12   57707983       59045772     NM_000075          CDK4
1    chr12   57707983       59045772     NM_000785       CYP27B1
2    chr12   57707983       59045772  NM_001080156       ARHGAP9
4    chr12   57707983       59045772  NM_001111270      ARHGEF25
5    chr12   57707983       59045772  NM_001122772         AGAP2
6    chr12   57707983       59045772  NM_001146258       PIP4K2C
7    chr12   57707983       59045772  NM_001160045          GLI1
9    chr12   57707983       59045772  NM_001172695          TSFM
11   chr12   57707983       59045772  NM_001261412         DCTN2
12   chr12   57707983       59045772  NM_001261422           OS9
13   chr12   57707983       59045772  NM_001276468      B4GALNT1
15   chr12   57707983       59045772  NM_001286245          DTX3
17   chr12   57707983       59045772  NM_001320408         ATP23
18   chr12   57707983       59045772  NM_001330122        R3HDM2
20   chr12   57707983       59045772     NM_004083         DDIT3
21   chr12   57707983       59045772     NM_004984         KIF5A
22   chr12   57707983       59045772     NM_004990          MARS
23   chr12   57707983       59045772     NM_005371        METTL1
24   chr12   57707983       59045772     NM_005538         INHBC
25   chr12   57707983       59045772     NM_005730        CTDSP2
26   chr12   57707983       59045772     NM_005981       TSPAN31
27   chr12   57707983       59045772     NM_006576          AVIL
30   chr12   57707983       59045772     NM_015433      METTL21B
31   chr12   57707983       59045772     NM_031479         INHBE
33   chr12   57707983       59045772     NM_052897          MBD6
34   chr12   57707983       59045772     NM_133489      SLC26A10
35   chr12   57707983       59045772     NM_138396        MARCH9
37   chr12   57707983       59045772     NR_027032     AGAP2-AS1
38   chr12   57707983       59045772     NR_029847       MIR26A2
39   chr12   57707983       59045772     NR_030346        MIR616
..     ...        ...            ...           ...           ...
81   chr14   21732791       24006931     NM_004643        PABPN1
82   chr14   21732791       24006931     NM_004995         MMP14
83   chr14   21732791       24006931     NM_005015         OXA1L
84   chr14   21732791       24006931     NM_007192       SUPT16H
86   chr14   21732791       24006931     NM_017815         HAUS4
87   chr14   21732791       24006931     NM_017924     C14orf119
88   chr14   21732791       24006931     NM_018107         RBM23
89   chr14   21732791       24006931     NM_019852        METTL3
90   chr14   21732791       24006931     NM_020366       RPGRIP1
91   chr14   21732791       24006931     NM_020834         HOMEZ
93   chr14   21732791       24006931     NM_022060         ABHD4
94   chr14   21732791       24006931     NM_022478         CDH24
95   chr14   21732791       24006931     NM_022789          IL25
96   chr14   21732791       24006931     NM_031314        HNRNPC
99   chr14   21732791       24006931     NM_033400         ZFHX2
100  chr14   21732791       24006931     NM_138460         CMTM5
102  chr14   21732791       24006931     NM_173527          REM2
104  chr14   21732791       24006931     NR_002916        SNORD8
105  chr14   21732791       24006931     NR_003029        SNORD9
106  chr14   21732791       24006931     NR_029595       MIR208A
107  chr14   21732791       24006931     NR_030624       MIR208B
108  chr14   21732791       24006931     NR_039856       MIR4707
110  chr14   21732791       24006931     NR_046051         THTPA
112  chr14   21732791       24006931     NR_110002  LOC101926933
114  chr14   21732791       24006931     NR_111966         SALL2
116  chr14   21732791       24006931     NR_120599     PRMT5-AS1
117  chr14   21732791       24006931     NR_126491          MHRT
118   chr7  110512935      110737034  NM_001099658         LRRN3
119   chr7  110512935      110737034  NM_001244606        IMMP2L
121   chr9   20792914       20918883     NM_017794         FOCAD

[95 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28707342       29884763  NM_001130414         APBA2
1   chr15   28707342       29884763  NM_001282468       GOLGA8M
2   chr15   28707342       29884763     NM_015307      FAM189A1
3   chr15   28707342       29884763     NM_138704        NSMCE3
4   chr15   28707342       29884763     NR_026589       WHAMMP2
5   chr15   28707342       29884763     NR_033351       GOLGA8F
6   chr15   28707342       29884763     NR_033353       GOLGA8G
7   chr15   28707342       29884763     NR_036443       HERC2P9
8   chr15   28707342       29884763     NR_036475  LOC100289656
9   chr15   28707342       29884763     NR_037599     PDCD6IPP2
10  chr15   28707342       29884763     NR_039734     MIR4509-3
11  chr15   28707342       29884763     NR_047567     GOLGA6L7P
12  chr21   44838499       44978564  NM_001320643  LOC102724428
13  chr21   44838499       44978564     NM_007031        HSF2BP
14  chr21   44838499       44978564     NM_173354          SIK1
15  chr21   44838499       44978564     NR_026863     LINC00313
16  chr21   44838499       44978564     NR_026960     LINC00319
17  chr21   44838499       44978564     NR_136540  LOC102724354
18   chr5   23828464       24025583     NR_131245       C5orf17
19   chr5  125639897      126938419  NM_001146319        GRAMD3
22   chr5  125639897      126938419  NM_001164478       C5orf63
24   chr5  125639897      126938419  NM_001198557         LMNB1
25   chr5  125639897      126938419  NM_001201377       ALDH7A1
26   chr5  125639897      126938419  NM_001256545        MEGF10
29   chr5  125639897      126938419     NM_032177          PHAX
30   chr5  125639897      126938419     NM_130809         PRRC1
31   chr5  125639897      126938419     NM_178450        MARCH3
32   chr5  125639897      126938419     NM_207408         TEX43
33   chr5  125639897      126938419     NR_134485  LOC102723557
34   chr7   63873715       66347163     NM_000048           ASL
35   chr7   63873715       66347163     NM_000181          GUSB
36   chr7   63873715       66347163  NM_001007253        ERV3-1
38   chr7   63873715       66347163  NM_001130022        ZNF680
39   chr7   63873715       66347163  NM_001160183        ZNF138
40   chr7   63873715       66347163  NM_001167961         KCTD7
41   chr7   63873715       66347163  NM_001282360        ZNF107
42   chr7   63873715       66347163  NM_001287060       RABGEF1
45   chr7   63873715       66347163  NM_001287532         ZNF92
47   chr7   63873715       66347163     NM_003596         TPST1
48   chr7   63873715       66347163     NM_015852        ZNF117
49   chr7   63873715       66347163     NM_021148        ZNF273
50   chr7   63873715       66347163     NM_173517      VKORC1L1
52   chr7   63873715       66347163     NR_002961       SNORA22
53   chr7   63873715       66347163     NR_003110        CCT6P1
54   chr7   63873715       66347163     NR_003934    GTF2IRD1P1
55   chr7   63873715       66347163     NR_024548          CRCP
56   chr7   63873715       66347163     NR_026873     LINC00174
57   chr7   63873715       66347163     NR_027392       INTS4P2
58   chr7   63873715       66347163     NR_029404       YWHAEP1
59   chr7   63873715       66347163     NR_033245     LOC641746
60   chr7   63873715       66347163     NR_033416        CCT6P3
61   chr7   63873715       66347163     NR_038378     LOC441242
63   chr7   63873715       66347163     NR_077227  LOC100128885
67   chr7   63873715       66347163     NR_106898       MIR6839
68   chr7   63873715       66347163     NR_110037  LOC100996437
69   chr7   63873715       66347163     NR_111972  GS1-124K5.11
71   chr7   63873715       66347163     NR_134570   GS1-124K5.4
73   chr7   63873715       66347163     NR_135738      GTF2IP23,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145091384      145420191  NM_001277444         NBPF9
1    chr1  145091384      145420191  NM_001278267        NBPF20
2    chr1  145091384      145420191  NM_001302371        NBPF10
3    chr1  145091384      145420191     NM_004892        SEC22B
4    chr1  145091384      145420191     NM_145277          HFE2
5    chr1  145091384      145420191     NM_203458      NOTCH2NL
6    chr1  145091384      145420191     NR_104217       NBPF25P
7    chr1  145091384      145420191     NR_125967  LOC101928979
8   chr15   28621475       29971833  NM_001130414         APBA2
9   chr15   28621475       29971833  NM_001282468       GOLGA8M
10  chr15   28621475       29971833     NM_015307      FAM189A1
11  chr15   28621475       29971833     NM_138704        NSMCE3
12  chr15   28621475       29971833     NR_026589       WHAMMP2
13  chr15   28621475       29971833     NR_033351       GOLGA8F
15  chr15   28621475       29971833     NR_033353       GOLGA8G
17  chr15   28621475       29971833     NR_036443       HERC2P9
18  chr15   28621475       29971833     NR_036475  LOC100289656
19  chr15   28621475       29971833     NR_037599     PDCD6IPP2
20  chr15   28621475       29971833     NR_039734     MIR4509-3
22  chr15   28621475       29971833     NR_047567     GOLGA6L7P
23  chr15   28621475       29971833     NR_135221  LOC100130111
24  chr16   80801177       81081052  NM_001100625         CENPN
26  chr16   80801177       81081052  NM_001300728         ATMIN
29  chr16   80801177       81081052     NM_020188          CMC2
30  chr16   80801177       81081052     NM_152342         CDYL2
31  chr16   80801177       81081052     NR_131948       PRCAT47
32  chr18   24795921       24989586     NR_134589  LOC105372038
33   chr2   75855666       76219295  NM_001201334         GCFC2
36   chr2   75855666       76219295     NM_014763        MRPL19
37   chr2  193635895      193737429     NR_002769        PCGEM1
38  chr20   14666541       14770015     NM_080676       MACROD2
39   chr5   82392672       82559480  NM_001318012         XRCC4,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21783045       22018994  NM_001163380     RAB2B
1   chr14   21783045       22018994  NM_001170629      CHD8
2   chr14   21783045       22018994  NM_001303523      TOX4
3   chr14   21783045       22018994     NM_007192   SUPT16H
4   chr14   21783045       22018994     NM_019852    METTL3
5   chr14   21783045       22018994     NM_020366   RPGRIP1
8   chr14   21783045       22018994     NR_002916    SNORD8
9   chr14   21783045       22018994     NR_003029    SNORD9
10  chr14   21783045       22018994     NR_111966     SALL2
12  chr14   21804280       22141176  NM_001001912     OR4E2
13  chr14   21804280       22141176  NM_001005465    OR10G3
14  chr14   21804280       22141176  NM_001005466    OR10G2
15  chr14   21804280       22141176  NM_001163380     RAB2B
16  chr14   21804280       22141176  NM_001170629      CHD8
17  chr14   21804280       22141176  NM_001303523      TOX4
18  chr14   21804280       22141176  NM_001317107     OR4E1
19  chr14   21804280       22141176     NM_007192   SUPT16H
20  chr14   21804280       22141176     NM_019852    METTL3
21  chr14   21804280       22141176     NM_020366   RPGRIP1
24  chr14   21804280       22141176     NR_002916    SNORD8
25  chr14   21804280       22141176     NR_003029    SNORD9
26  chr14   21804280       22141176     NR_111966     SALL2
28   chr7  110669492      110799062  NM_001099658     LRRN3
29   chr7  110669492      110799062  NM_001244606    IMMP2L
31   chr9   38967649       39269941     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28630166       29093335  NM_001282468       GOLGA8M
1   chr15   28630166       29093335     NR_026589       WHAMMP2
2   chr15   28630166       29093335     NR_033351       GOLGA8F
4   chr15   28630166       29093335     NR_033353       GOLGA8G
6   chr15   28630166       29093335     NR_036443       HERC2P9
7   chr15   28630166       29093335     NR_036475  LOC100289656
8   chr15   28630166       29093335     NR_037599     PDCD6IPP2
9   chr15   28630166       29093335     NR_039734     MIR4509-3
11  chr15   28630166       29093335     NR_047567     GOLGA6L7P
12  chr18   61799308       62033699     NR_027245     LINC00305
13  chr18   61799308       62033699     NR_033881     LOC284294
14  chr18   61799308       62033699     NR_033983     LINC01538
15   chr7    6886327        7116326     NR_034022  LOC100131257
16   chr7    6886327        7116326     NR_037454       MIR3683
17   chr9  102069374      102338677     NR_102270          NAMA,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67977879       68263672  NM_001127384        CTNNA3
2   chr10  120500563      123417024  NM_001005339         RGS10
3   chr10  120500563      123417024  NM_001030059         PLPP4
4   chr10  120500563      123417024  NM_001144913         FGFR2
8   chr10  120500563      123417024  NM_001243194        INPP5F
10  chr10  120500563      123417024  NM_001256378         MCMBP
12  chr10  120500563      123417024  NM_001303113        FAM45A
14  chr10  120500563      123417024  NM_001323969         TIAL1
16  chr10  120500563      123417024     NM_003750         EIF3A
17  chr10  120500563      123417024     NM_004281          BAG3
18  chr10  120500563      123417024     NM_005308          GRK5
19  chr10  120500563      123417024     NM_007190       SEC23IP
21  chr10  120500563      123417024     NM_018117         WDR11
23  chr10  120500563      123417024     NM_153810        CACUL1
24  chr10  120500563      123417024     NM_199461        NANOS1
25  chr10  120500563      123417024     NR_002917       SNORA19
26  chr10  120500563      123417024     NR_027141       FAM45BP
27  chr10  120500563      123417024     NR_033850     WDR11-AS1
28  chr10  120500563      123417024     NR_039829       MIR4681
29  chr10  120500563      123417024     NR_039830       MIR4682
31  chr10  120500563      123417024     NR_103717     LINC01561
32  chr10  120500563      123417024     NR_110305         SFXN4
33  chr10  120500563      123417024     NR_126103         PRDX3
34  chr11    7556717        7845426  NM_001256568       PPFIBP2
36  chr11    7556717        7845426  NM_001302826        CYB5R2
40  chr11    7556717        7845426     NM_153444         OR5P2
41  chr11    7556717        7845426     NM_198185         OVCH2
42  chr12   16424219       16542922  NM_001170798       SLC15A5
43  chr12   16424219       16542922  NM_001267598         MGST1
48  chr17     165671         600294  NM_001013672      C17orf97
49  chr17     165671         600294  NM_001128159         VPS53
50  chr17     165671         600294  NM_001190411        RPH3AL
52  chr17     165671         600294     NM_182705         RFLNB
53  chr17     165671         600294     NR_040011  LOC100506388
54  chr17     165671         600294     NR_136407  LOC105371430
55  chr22   17253763       17599432  NM_001037814          GAB4
56  chr22   17253763       17599432  NM_001163079         CECR6
57  chr22   17253763       17599432  NM_001289905        IL17RA
59  chr22   17253763       17599432     NM_175878          XKR3
60  chr22   17253763       17599432     NR_003607       HSFY1P1
61  chr22   17253763       17599432     NR_015352         CECR7
62   chr4     509080         931922     NM_000283         PDE6B
64   chr4     509080         931922  NM_001289053          PIGG
65   chr4     509080         931922  NM_001294341         MFSD7
66   chr4     509080         931922  NM_001297423       TMEM175
67   chr4     509080         931922  NM_001317836         PCGF3
68   chr4     509080         931922  NM_001318134           GAK
69   chr4     509080         931922     NM_002477          MYL5
70   chr4     509080         931922     NM_006651         CPLX1
71   chr4     509080         931922     NM_007100         ATP5I
72   chr4     509080         931922     NR_036511  LOC100129917
75   chr4   81903127       82008969     NM_001201          BMP3
76   chr4   81903127       82008969  NM_001282483         PRKG2
78   chr5  154205633      154316489  NM_001301074         CNOT8
81   chr5  154205633      154316489     NM_015465        GEMIN5
82   chr5  154205633      154316489     NM_032385        FAXDC2
83   chr5  154205633      154316489     NR_039667       MIR378H,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245006941      245176454  NM_001143943        EFCAB2
2    chr1  245006941      245176454  NM_001312871         COX20
4    chr1  245006941      245176454     NM_004501        HNRNPU
7    chr1  245006941      245176454     NR_111907  LOC101928068
8    chr1  245006941      245176454     NR_132782      SNORA100
9   chr15   28478358       29270000  NM_001130414         APBA2
10  chr15   28478358       29270000  NM_001282468       GOLGA8M
11  chr15   28478358       29270000     NM_004667         HERC2
12  chr15   28478358       29270000     NR_026589       WHAMMP2
13  chr15   28478358       29270000     NR_033351       GOLGA8F
15  chr15   28478358       29270000     NR_033353       GOLGA8G
17  chr15   28478358       29270000     NR_036443       HERC2P9
18  chr15   28478358       29270000     NR_036475  LOC100289656
19  chr15   28478358       29270000     NR_037599     PDCD6IPP2
20  chr15   28478358       29270000     NR_039734     MIR4509-3
22  chr15   28478358       29270000     NR_047567     GOLGA6L7P
23   chr4   68964994       69158394     NM_182502     TMPRSS11B
24   chr4   68964994       69158394     NM_207407     TMPRSS11F
25   chr4   68964994       69158394     NR_015446        FTLP10
26   chr4   68964994       69158394     NR_104048   TMPRSS11BNL
27   chr9   28587612       28893760  NM_001258282        LINGO2
29   chr9   28587612       28893760     NR_030597        MIR876
30   chr9   28587612       28893760     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145306627      145498242  NM_001039888      ANKRD34A
1    chr1  145306627      145498242  NM_001277444         NBPF9
2    chr1  145306627      145498242  NM_001278267        NBPF20
3    chr1  145306627      145498242  NM_001302371        NBPF10
4    chr1  145306627      145498242  NM_001313972         TXNIP
6    chr1  145306627      145498242     NM_032305       POLR3GL
7    chr1  145306627      145498242     NM_145277          HFE2
8    chr1  145306627      145498242     NM_153713         LIX1L
9    chr1  145306627      145498242     NR_104217       NBPF25P
10   chr1  145306627      145498242     NR_125967  LOC101928979
11  chr16   29531334       29842483  NM_001030288           SPN
12  chr16   29531334       29842483  NM_001256269         KIF22
14  chr16   29531334       29842483  NM_001256443         PRRT2
15  chr16   29531334       29842483  NM_001276275           MAZ
16  chr16   29531334       29842483  NM_001293204           MVP
17  chr16   29531334       29842483  NM_001318249          QPRT
21  chr16   29531334       29842483     NM_024516         PAGR1
22  chr16   29531334       29842483     NM_152338          ZG16
23  chr16   29531334       29842483     NM_175900      C16orf54
24  chr16   29531334       29842483     NR_049833     MIR3680-2
25  chr16   29531334       29842483     NR_135305        SMG1P2
27   chr9   41873064       42315927     NR_003670        FGF7P3
28   chr9   41873064       42315927     NR_015363         GLIDR
31   chr9   41873064       42315927     NR_126048  LOC102724238
32   chr9   41873064       42315927     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   81521866       81844141  NM_001270367      TMEM254
3   chr10   81521866       81844141     NM_003019        SFTPD
4   chr10   81521866       81844141     NR_002724        MBL1P
5   chr10   81521866       81844141     NR_027431  TMEM254-AS1
6   chr10   81521866       81844141     NR_029407    LOC642361
7   chr10   81521866       81844141     NR_033857      BMS1P21
8   chr10   81521866       81844141     NR_120611   NUTM2B-AS1
11  chr11   67167569       67423764     NM_000852        GSTP1
12  chr11   67167569       67423764  NM_001018070       CORO1B
13  chr11   67167569       67423764  NM_001078650      TMEM134
14  chr11   67167569       67423764  NM_001166102       NDUFV1
15  chr11   67167569       67423764  NM_001166222       CARNS1
16  chr11   67167569       67423764  NM_001243750        NUDT8
17  chr11   67167569       67423764  NM_001256508     TBC1D10C
18  chr11   67167569       67423764  NM_001300895        CABP4
20  chr11   67167569       67423764  NM_001302959          AIP
21  chr11   67167569       67423764  NM_001318496        CABP2
22  chr11   67167569       67423764     NM_002708       PPP1CA
23  chr11   67167569       67423764     NM_003952      RPS6KB2
25  chr11   67167569       67423764     NM_004910      PITPNM1
26  chr11   67167569       67423764     NM_005608      PTPRCAP
27  chr11   67167569       67423764     NM_005851      CDK2AP2
28  chr11   67167569       67423764     NM_005995        TBX10
30  chr11   67167569       67423764     NM_080658         ACY3
33  chr11   67167569       67423764     NM_206997       GPR152
34  chr11   67167569       67423764     NR_033791       DOC2GP
37  chr11   67167569       67423764     NR_106810      MIR6752
38  chr11   67167569       67423764     NR_130935     C11orf72
39  chr14   21793147       21941545  NM_001163380        RAB2B
40  chr14   21793147       21941545  NM_001170629         CHD8
41  chr14   21793147       21941545     NM_007192      SUPT16H
42  chr14   21793147       21941545     NM_020366      RPGRIP1
45  chr14   21793147       21941545     NR_002916       SNORD8
46  chr14   21793147       21941545     NR_003029       SNORD9
47  chr20    9046891        9155157  NM_001172646        PLCB4
48  chr20   14739251       15093828     NM_080676      MACROD2
49  chr20   14739251       15093828     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   72525036       72698649     NM_013381      TRHDE
1   chr12   72525036       72698649     NR_026836  TRHDE-AS1
3   chr14   21801363       21946792  NM_001163380      RAB2B
4   chr14   21801363       21946792  NM_001170629       CHD8
5   chr14   21801363       21946792  NM_001303523       TOX4
6   chr14   21801363       21946792     NM_007192    SUPT16H
7   chr14   21801363       21946792     NM_020366    RPGRIP1
10  chr14   21801363       21946792     NR_002916     SNORD8
11  chr14   21801363       21946792     NR_003029     SNORD9,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21772644       21980558  NM_001163380      RAB2B
1   chr14   21772644       21980558  NM_001170629       CHD8
2   chr14   21772644       21980558  NM_001303523       TOX4
3   chr14   21772644       21980558     NM_007192    SUPT16H
4   chr14   21772644       21980558     NM_019852     METTL3
5   chr14   21772644       21980558     NM_020366    RPGRIP1
8   chr14   21772644       21980558     NR_002916     SNORD8
9   chr14   21772644       21980558     NR_003029     SNORD9
10  chr16   68608207       68843345  NM_001305204      ZFP90
11  chr16   68608207       68843345  NM_001317184       CDH1
12  chr16   68608207       68843345  NM_001317195       CDH3
13  chr16   68608207       68843345     NR_106988  MIR7641-2
14   chr9  132329064      132653600     NM_000113      TOR1A
15   chr9  132329064      132653600  NM_001286796      NTMT1
19   chr9  132329064      132653600     NM_004878      PTGES
20   chr9  132329064      132653600     NM_006676      USP20
21   chr9  132329064      132653600     NM_014506      TOR1B
22   chr9  132329064      132653600     NM_015033      FNBP1
23   chr9  132329064      132653600     NM_016307      PRRX2
24   chr9  132329064      132653600     NM_016520    C9orf78
25   chr9  132329064      132653600     NM_177999       ASB6
26   chr9  132329064      132653600     NM_199350    C9orf50
27   chr9  132329064      132653600     NR_106914    MIR6855
28   chr9  132329064      132653600     NR_132102  PRRX2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18414488       18968384  NM_001004060         NOMO2
1   chr16   18414488       18968384     NM_001019        RPS15A
2   chr16   18414488       18968384  NM_001282511        NPIPA8
3   chr16   18414488       18968384  NM_001313858       ARL6IP1
4   chr16   18414488       18968384     NM_015092          SMG1
6   chr16   18414488       18968384     NR_003569       ABCC6P1
7   chr16   18414488       18968384     NR_036140     MIR3179-1
8   chr16   18414488       18968384     NR_036142     MIR3180-2
9   chr16   18414488       18968384     NR_036144     MIR3180-3
10  chr16   18414488       18968384     NR_037442     MIR3670-1
11  chr16   18414488       18968384     NR_103772  LOC100288162
12  chr16   18414488       18968384     NR_106971     MIR6511A4
13  chr16   18414488       18968384     NR_107060     MIR6770-2
14   chr2   95953730       96074180  NM_001034914        KCNIP3
15   chr2   95953730       96074180  NM_001321070         PROM2
17   chr2   95953730       96074180     NM_016044        FAHD2A
18  chr20   14818110       14921270     NM_080676       MACROD2
19  chr20   14818110       14921270     NR_037841   MACROD2-AS1
21   chr4  189192127      189387037     NR_033869     LINC01060
22   chr9    9812942        9927180     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr13   93067324       93345047     NM_004466      GPC5
1   chr13   93067324       93345047     NR_049840  MIR548AS
2   chr14   21925702       22027236  NM_001163380     RAB2B
3   chr14   21925702       22027236  NM_001303523      TOX4
4   chr14   21925702       22027236     NM_019852    METTL3
6   chr14   21925702       22027236     NR_111966     SALL2
8   chr14   21918704       22399951  NM_001001912     OR4E2
9   chr14   21918704       22399951  NM_001005465    OR10G3
10  chr14   21918704       22399951  NM_001005466    OR10G2
11  chr14   21918704       22399951  NM_001163380     RAB2B
12  chr14   21918704       22399951  NM_001303523      TOX4
13  chr14   21918704       22399951  NM_001317107     OR4E1
14  chr14   21918704       22399951     NM_019852    METTL3
16  chr14   21918704       22399951     NR_111966     SALL2
18   chr4     143998         257188  NM_001039127    ZNF718
21   chr4     143998         257188     NR_027481   ZNF876P,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18325224       18453115  NM_001282511        NPIPA8
1  chr16   18325224       18453115     NR_103772  LOC100288162
2  chr16   18325224       18453115     NR_106971     MIR6511A4
3   chr7  117564607      117838329     NM_016200          LSM8,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   57646453       58484546     NM_000075          CDK4
1   chr12   57646453       58484546     NM_000785       CYP27B1
2   chr12   57646453       58484546  NM_001080156       ARHGAP9
4   chr12   57646453       58484546  NM_001111270      ARHGEF25
5   chr12   57646453       58484546  NM_001122772         AGAP2
6   chr12   57646453       58484546  NM_001146258       PIP4K2C
7   chr12   57646453       58484546  NM_001160045          GLI1
9   chr12   57646453       58484546  NM_001172695          TSFM
11  chr12   57646453       58484546  NM_001261412         DCTN2
12  chr12   57646453       58484546  NM_001261422           OS9
13  chr12   57646453       58484546  NM_001276468      B4GALNT1
15  chr12   57646453       58484546  NM_001286245          DTX3
17  chr12   57646453       58484546  NM_001320408         ATP23
18  chr12   57646453       58484546  NM_001330122        R3HDM2
20  chr12   57646453       58484546     NM_004083         DDIT3
21  chr12   57646453       58484546     NM_004984         KIF5A
22  chr12   57646453       58484546     NM_004990          MARS
23  chr12   57646453       58484546     NM_005371        METTL1
24  chr12   57646453       58484546     NM_005538         INHBC
25  chr12   57646453       58484546     NM_005730        CTDSP2
26  chr12   57646453       58484546     NM_005981       TSPAN31
27  chr12   57646453       58484546     NM_006576          AVIL
30  chr12   57646453       58484546     NM_015433      METTL21B
31  chr12   57646453       58484546     NM_031479         INHBE
33  chr12   57646453       58484546     NM_052897          MBD6
34  chr12   57646453       58484546     NM_133489      SLC26A10
35  chr12   57646453       58484546     NM_138396        MARCH9
37  chr12   57646453       58484546     NR_027032     AGAP2-AS1
38  chr12   57646453       58484546     NR_029847       MIR26A2
39  chr12   57646453       58484546     NR_030346        MIR616
40  chr12   57646453       58484546     NR_038269  LOC100506844
41  chr12   57646453       58484546     NR_106816       MIR6758
42  chr12   57646453       58484546     NR_106817       MIR6759
43  chr12   57646453       58484546     NR_120450  LOC101927583
44  chr12   57646453       58484546     NR_135022  LOC105369785
45  chr14   47921053       48032563  NM_001113498         MDGA2
46  chr22   17220426       17652657  NM_001037814          GAB4
47  chr22   17220426       17652657  NM_001163079         CECR6
48  chr22   17220426       17652657  NM_001289905        IL17RA
49  chr22   17220426       17652657     NM_017829         CECR5
52  chr22   17220426       17652657     NM_175878          XKR3
53  chr22   17220426       17652657     NR_003607       HSFY1P1
54  chr22   17220426       17652657     NR_015352         CECR7
55  chr22   17220426       17652657     NR_024482     CECR5-AS1
56  chr22   17220426       17652657     NR_103793  LOC100996342
57  chr22   17220426       17652657     NR_134584  LOC101929350
58   chr9   14952409       15836617  NM_001039697        SNAPC3
59   chr9   14952409       15836617  NM_001128217         PSIP1
60   chr9   14952409       15836617  NM_001168339        TTC39B
64   chr9   14952409       15836617     NM_173550       CCDC171
65   chr9   14952409       15836617     NR_003920     LOC389705,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21831502       22012595  NM_001163380      RAB2B
1   chr14   21831502       22012595  NM_001170629       CHD8
2   chr14   21831502       22012595  NM_001303523       TOX4
3   chr14   21831502       22012595     NM_007192    SUPT16H
4   chr14   21831502       22012595     NM_019852     METTL3
7   chr14   21831502       22012595     NR_002916     SNORD8
8   chr14   21831502       22012595     NR_003029     SNORD9
9   chr14   21831502       22012595     NR_111966      SALL2
11   chr4     523002         624077     NM_000283      PDE6B
12   chr4     523002         624077     NR_110293       PIGG
14   chr9   41466177       41625669  NM_001113541  SPATA31A5
15   chr9   41466177       41625669     NM_015667  SPATA31A7
16   chr9   41466177       41625669     NR_003528    ZNF658B
17   chr9   41466177       41625669     NR_026803    FAM74A1
18   chr9  108526877      108692777     NM_018112    TMEM38B,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67244353       67439030     NM_000695   ALDH3B2
1   chr11   67244353       67439030     NM_000852     GSTP1
3   chr11   67244353       67439030  NM_001166102    NDUFV1
4   chr11   67244353       67439030  NM_001243750     NUDT8
5   chr11   67244353       67439030  NM_001302959       AIP
6   chr11   67244353       67439030  NM_001318496     CABP2
8   chr11   67244353       67439030     NM_004910   PITPNM1
9   chr11   67244353       67439030     NM_005851   CDK2AP2
10  chr11   67244353       67439030     NM_005995     TBX10
11  chr11   67244353       67439030     NM_080658      ACY3
13  chr11   67244353       67439030     NR_033791    DOC2GP
15  chr11   67244353       67439030     NR_106810   MIR6752
16  chr11   67244353       67439030     NR_130935  C11orf72
17  chr20   14684301       14828960     NM_080676   MACROD2
18   chr7   93255794       93360478     NR_039796   MIR4652
19   chr9   28189126       28358224  NM_001258282    LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143740746      145091104  NM_001002810       PDE4DIP
3    chr1  143740746      145091104  NM_001123068       PPIAL4G
4    chr1  143740746      145091104  NM_001135789       PPIAL4C
9    chr1  143740746      145091104  NM_001277444         NBPF9
10   chr1  143740746      145091104  NM_001278267        NBPF20
11   chr1  143740746      145091104  NM_001287385        FAM72C
12   chr1  143740746      145091104  NM_001345942        FAM72D
17   chr1  143740746      145091104     NR_003242        PFN1P2
18   chr1  143740746      145091104     NR_024511     LINC00623
20   chr1  143740746      145091104     NR_102405         NBPF8
21   chr1  143740746      145091104     NR_104014     LINC01138
22   chr1  143740746      145091104     NR_111953     LINC00869
24  chr10  100628177      100839589  NM_001166244         HPSE2
25  chr10  100628177      100839589     NR_106762       MIR6507
26  chr11   63500617       63640201  NM_001039469         MARK2
27  chr11   63500617       63640201  NM_001144936      C11orf95
28  chr11   63500617       63640201  NM_001265591          RTN3
29  chr11   63500617       63640201     NM_138471      C11orf84
30   chr7   63860518       64206187  NM_001130022        ZNF680
31   chr7   63860518       64206187  NM_001282360        ZNF107
33   chr7   63860518       64206187     NR_029404       YWHAEP1
34   chr7   63860518       64206187     NR_033245     LOC641746
35   chr7   63860518       64206187     NR_077227  LOC100128885
37   chr7   63860518       64206187     NR_106898       MIR6839
38   chr7   75847171       75948963  NM_001110199         SRRM3
39   chr7   75847171       75948963     NM_001540         HSPB1
40   chr7  110686900      110880300  NM_001099658         LRRN3
41   chr7  110686900      110880300  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   21904858       22017159  NM_001163380         RAB2B
1  chr14   21904858       22017159  NM_001303523          TOX4
2  chr14   21904858       22017159     NM_019852        METTL3
3  chr14   21904858       22017159     NM_020920          CHD8
5  chr14   21904858       22017159     NR_111966         SALL2
7   chr3   41326940       41475687  NM_001322500          ULK4
9   chr4  125302240      125578119     NR_110838  LOC101927087,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21850080       21995273  NM_001163380     RAB2B
1   chr14   21850080       21995273  NM_001170629      CHD8
2   chr14   21850080       21995273  NM_001303523      TOX4
3   chr14   21850080       21995273     NM_007192   SUPT16H
4   chr14   21850080       21995273     NM_019852    METTL3
7   chr14   21850080       21995273     NR_002916    SNORD8
8   chr14   21850080       21995273     NR_003029    SNORD9
9   chr14   21850080       21995273     NR_111966     SALL2
11  chr18   63319874       63584458  NM_001317214      CDH7
14   chr3   60254283       60356049  NM_001320899      FHIT,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0     chr1   12817114       13238355  NM_001009611       PRAMEF4
1     chr1   12817114       13238355  NM_001010889       PRAMEF6
2     chr1   12817114       13238355  NM_001010890       PRAMEF9
3     chr1   12817114       13238355  NM_001012276       PRAMEF8
4     chr1   12817114       13238355  NM_001013407       PRAMEF5
5     chr1   12817114       13238355  NM_001013631      HNRNPCL1
6     chr1   12817114       13238355  NM_001080830      PRAMEF12
7     chr1   12817114       13238355  NM_001099850      PRAMEF18
8     chr1   12817114       13238355  NM_001100631      PRAMEF22
9     chr1   12817114       13238355  NM_001136561      HNRNPCL2
10    chr1   12817114       13238355  NM_001146181      HNRNPCL3
11    chr1   12817114       13238355  NM_001146344      PRAMEF11
12    chr1   12817114       13238355  NM_001294139       PRAMEF1
13    chr1   12817114       13238355  NM_001302551      HNRNPCL4
14    chr1   12817114       13238355  NM_001306072      PRAMEF26
15    chr1   12817114       13238355  NM_001310134      PRAMEF25
17    chr1   12817114       13238355     NM_023014       PRAMEF2
18    chr1   12817114       13238355     NM_152290      C1orf158
19    chr1   12817114       13238355     NR_111945     PRAMEF36P
21   chr13   40320973       40486336  NM_001145079          COG6
23   chr14   21712805       24190941     NM_000257          MYH7
24   chr14   21712805       24190941  NM_001001912         OR4E2
25   chr14   21712805       24190941  NM_001005465        OR10G3
26   chr14   21712805       24190941  NM_001005466        OR10G2
27   chr14   21712805       24190941  NM_001039619         PRMT5
28   chr14   21712805       24190941  NM_001042635          NGDN
29   chr14   21712805       24190941  NM_001099780        PSMB11
30   chr14   21712805       24190941  NM_001126105        SLC7A7
32   chr14   21712805       24190941  NM_001130706      C14orf93
33   chr14   21712805       24190941  NM_001130725         PSMB5
..     ...        ...            ...           ...           ...
69   chr14   21712805       24190941     NM_018107         RBM23
70   chr14   21712805       24190941     NM_019852        METTL3
71   chr14   21712805       24190941     NM_020366       RPGRIP1
72   chr14   21712805       24190941     NM_020834         HOMEZ
74   chr14   21712805       24190941     NM_022060         ABHD4
75   chr14   21712805       24190941     NM_022478         CDH24
76   chr14   21712805       24190941     NM_022789          IL25
77   chr14   21712805       24190941     NM_031314        HNRNPC
80   chr14   21712805       24190941     NM_033400         ZFHX2
81   chr14   21712805       24190941     NM_138460         CMTM5
83   chr14   21712805       24190941     NM_173527          REM2
86   chr14   21712805       24190941     NR_002916        SNORD8
87   chr14   21712805       24190941     NR_003029        SNORD9
88   chr14   21712805       24190941     NR_029595       MIR208A
89   chr14   21712805       24190941     NR_030624       MIR208B
90   chr14   21712805       24190941     NR_039856       MIR4707
94   chr14   21712805       24190941     NR_110002  LOC101926933
96   chr14   21712805       24190941     NR_110555  LOC102724814
97   chr14   21712805       24190941     NR_111966         SALL2
99   chr14   21712805       24190941     NR_120599     PRMT5-AS1
100  chr14   21712805       24190941     NR_126491          MHRT
101  chr14   21932721       22040987  NM_001005465        OR10G3
102  chr14   21932721       22040987  NM_001163380         RAB2B
103  chr14   21932721       22040987  NM_001303523          TOX4
104  chr14   21932721       22040987     NM_019852        METTL3
106  chr14   21932721       22040987     NR_111966         SALL2
108   chr2  181823703      182364748     NM_000885         ITGA4
109   chr2  181823703      182364748  NM_001278554        UBE2E3
113   chr2  181823703      182364748     NR_039637       MIR4437
114   chr2  181823703      182364748     NR_130784  LOC101927156

[88 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  186255390      186711599     NM_000963         PTGS2
1    chr1  186255390      186711599  NM_001164245       C1orf27
2    chr1  186255390      186711599  NM_001303232          PRG4
3    chr1  186255390      186711599     NM_002597           PDC
4    chr1  186255390      186711599     NM_003292           TPR
5    chr1  186255390      186711599     NM_022375          OCLM
7    chr1  186255390      186711599     NR_125801        PACERR
8    chr1  186255390      186711599     NR_126002  LOC102724919
9   chr10   27581126       27939389  NM_001034842        PTCHD3
10  chr10   27581126       27939389  NM_001256411         RAB18
11  chr10   27581126       27939389     NR_138082       ARMC4P1
12  chr14   21907481       22142204  NM_001001912         OR4E2
13  chr14   21907481       22142204  NM_001005465        OR10G3
14  chr14   21907481       22142204  NM_001005466        OR10G2
15  chr14   21907481       22142204  NM_001163380         RAB2B
16  chr14   21907481       22142204  NM_001303523          TOX4
17  chr14   21907481       22142204  NM_001317107         OR4E1
18  chr14   21907481       22142204     NM_019852        METTL3
20  chr14   21907481       22142204     NR_111966         SALL2
22  chr15   85636553       86104188  NM_001243137         PDE8A
23  chr15   85636553       86104188  NM_001310153      GOLGA6L3
24  chr15   85636553       86104188     NM_006738        AKAP13
26  chr15   85636553       86104188     NR_049748     LOC642423
27  chr15   85636553       86104188     NR_106993       MIR7706
28   chr4  128707576      128838058  NM_001190801          PLK4
29   chr4  128707576      128838058  NM_001317381        HSPA4L
33   chr6   91997435       93590065     NR_039786       MIR4643
34   chr6   91997435       93590065     NR_104154         CASC6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   45670379       45786473     NM_018353      MIS18BP1
1   chr22   18988101       19331601  NM_001184781         DGCR2
2   chr22   18988101       19331601  NM_001256534       SLC25A1
3   chr22   18988101       19331601     NM_001835        CLTCL1
4   chr22   18988101       19331601     NM_003325          HIRA
5   chr22   18988101       19331601     NM_005315          GSC2
7   chr22   18988101       19331601     NM_022719        DGCR14
8   chr22   18988101       19331601     NM_053006         TSSK2
9   chr22   18988101       19331601     NR_024157        DGCR11
10  chr22   18988101       19331601     NR_024159         DGCR9
11  chr22   18988101       19331601     NR_026651        DGCR10
12  chr22   18988101       19331601     NR_103767     LINC01311
13  chr22   18988101       19331601     NR_110533         DGCR5
14   chr5  151325053      151589808     NR_109876    CTB-12O2.1
15   chr9   28210023       28429247  NM_001258282        LINGO2
17   chr9   39060884       39196648     NM_033655       CNTNAP3
18   chr9   41920797       42085594     NR_003670        FGF7P3
19   chr9   41920797       42085594     NR_015363         GLIDR
22   chr9   41920797       42085594     NR_126048  LOC102724238
23   chr9   41920797       42085594     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21903281       22154201  NM_001001912      OR4E2
1   chr14   21903281       22154201  NM_001005465     OR10G3
2   chr14   21903281       22154201  NM_001005466     OR10G2
3   chr14   21903281       22154201  NM_001163380      RAB2B
4   chr14   21903281       22154201  NM_001303523       TOX4
5   chr14   21903281       22154201  NM_001317107      OR4E1
6   chr14   21903281       22154201     NM_019852     METTL3
7   chr14   21903281       22154201     NM_020920       CHD8
9   chr14   21903281       22154201     NR_111966      SALL2
11  chr21   22367125       22475569     NM_004540      NCAM2
12   chr4  189436463      189581136     NR_033869  LINC01060,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   38939709       39713786     NR_045000   ACTR3BP5
1   chr12   80995915       81209315  NM_001145026      PTPRQ
2   chr12   80995915       81209315  NM_001324423      LIN7A
3   chr12   80995915       81209315     NM_002469       MYF6
4   chr12   80995915       81209315     NM_005593       MYF5
5   chr12   80995915       81209315     NR_120468  LINC01490
6   chr14   21934651       22079021  NM_001005465     OR10G3
7   chr14   21934651       22079021  NM_001163380      RAB2B
8   chr14   21934651       22079021  NM_001303523       TOX4
9   chr14   21934651       22079021     NM_019852     METTL3
11  chr14   21934651       22079021     NR_111966      SALL2
13  chr14   45516649       45669485  NM_001308120    FAM179B
14  chr14   45516649       45669485  NM_001308133      FANCM
16  chr14   45516649       45669485     NM_002013      FKBP3
17  chr14   45516649       45669485     NM_017922     PRPF39
18  chr14   45516649       45669485     NR_003691   SNORD127
19  chr16   15367339       15470171  NM_001277325     NPIPA5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  130258890      130557500     NM_133448      TMEM132D
1   chr12  130258890      130557500     NR_024457  LOC100190940
2   chr14   21755234       22171223  NM_001001912         OR4E2
3   chr14   21755234       22171223  NM_001005465        OR10G3
4   chr14   21755234       22171223  NM_001005466        OR10G2
5   chr14   21755234       22171223  NM_001163380         RAB2B
6   chr14   21755234       22171223  NM_001170629          CHD8
7   chr14   21755234       22171223  NM_001303523          TOX4
8   chr14   21755234       22171223  NM_001317107         OR4E1
9   chr14   21755234       22171223     NM_007192       SUPT16H
10  chr14   21755234       22171223     NM_019852        METTL3
11  chr14   21755234       22171223     NM_020366       RPGRIP1
14  chr14   21755234       22171223     NR_002916        SNORD8
15  chr14   21755234       22171223     NR_003029        SNORD9
16  chr14   21755234       22171223     NR_111966         SALL2
18   chr7   17716327       17910034     NM_015132         SNX13
19   chr7  110561202      110769869  NM_001099658         LRRN3
20   chr7  110561202      110769869  NM_001244606        IMMP2L
22   chr7  117525323      117887476     NM_016200          LSM8
23   chr7  117525323      117887476     NM_019644        ANKRD7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48261283       48525756  NM_001004702         OR4C3
1   chr11   48261283       48525756  NM_001004725         OR4S1
2   chr11   48261283       48525756  NM_001004726         OR4X1
3   chr11   48261283       48525756  NM_001004727         OR4X2
4   chr11   48261283       48525756  NM_001005512        OR4A47
5   chr11   48261283       48525756  NM_001005513        OR4C45
6   chr15   28718064       29020157  NM_001282468       GOLGA8M
7   chr15   28718064       29020157     NR_026589       WHAMMP2
8   chr15   28718064       29020157     NR_033351       GOLGA8F
9   chr15   28718064       29020157     NR_033353       GOLGA8G
10  chr15   28718064       29020157     NR_036443       HERC2P9
11  chr15   28718064       29020157     NR_039734     MIR4509-3
12  chr15   98252277       98357250     NR_024172     LINC00923
13  chr20   14709455       14877434     NM_080676       MACROD2
14  chr20   14709455       14877434     NR_037841   MACROD2-AS1
15   chr7  110632622      110777546  NM_001099658         LRRN3
16   chr7  110632622      110777546  NM_001244606        IMMP2L
18   chr7  157329640      158115908  NM_001308267        PTPRN2
20   chr7  157329640      158115908     NR_029689      MIR153-2
21   chr7  157329640      158115908     NR_038966  LOC100506585,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr14   21786999       21958010  NM_001163380              RAB2B
1   chr14   21786999       21958010  NM_001170629               CHD8
2   chr14   21786999       21958010  NM_001303523               TOX4
3   chr14   21786999       21958010     NM_007192            SUPT16H
4   chr14   21786999       21958010     NM_020366            RPGRIP1
7   chr14   21786999       21958010     NR_002916             SNORD8
8   chr14   21786999       21958010     NR_003029             SNORD9
9   chr22   17017037       17173672     NM_014406             CCT8L2
10  chr22   17017037       17173672     NR_001591             TPTEP1
11  chr22   17017037       17173672     NR_040115  ANKRD62P1-PARP4P3
12   chr9   39100056       39322712     NM_033655            CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87659782       87795486  NM_001290053  LOC101927844
1    chr1   87659782       87795486     NM_006769          LMO4
2   chr14   21896525       22187595  NM_001001912         OR4E2
3   chr14   21896525       22187595  NM_001005465        OR10G3
4   chr14   21896525       22187595  NM_001005466        OR10G2
5   chr14   21896525       22187595  NM_001163380         RAB2B
6   chr14   21896525       22187595  NM_001170629          CHD8
7   chr14   21896525       22187595  NM_001303523          TOX4
8   chr14   21896525       22187595  NM_001317107         OR4E1
9   chr14   21896525       22187595     NM_019852        METTL3
12  chr14   21896525       22187595     NR_111966         SALL2
14  chr14   47833976       47968461  NM_001113498         MDGA2
15   chr2   69585596       70281051     NM_001153         ANXA4
16   chr2   69585596       70281051  NM_001202514          MXD1
17   chr2   69585596       70281051  NM_001244710         GFPT1
19   chr2   69585596       70281051     NM_006857       SNRNP27
20   chr2   69585596       70281051     NM_014911          AAK1
21   chr2   69585596       70281051     NM_015700          NFU1
22   chr2   69585596       70281051     NM_152792        ASPRV1
23   chr2   69585596       70281051     NM_178439         GMCL1
24   chr2   69585596       70281051     NR_003705      SNORA36C
25   chr2   69585596       70281051     NR_033872     PCBP1-AS1
26   chr2   78178718       78417404     NR_024342        SNAR-H
27   chr2   78178718       78417404     NR_110287  LOC101927948
28   chr2   78178718       78417404     NR_110288  LOC101927967
29  chr21   13698519       15115877     NM_174981         POTED
30  chr21   13698519       15115877     NR_026916    ANKRD30BP2
31  chr21   13698519       15115877     NR_036061     MIR3118-1
32  chr21   13698519       15115877     NR_036164     MIR3156-3
33  chr21   13698519       15115877     NR_110544  LOC102724188
34  chr21   13698519       15115877     NR_128718     MIR8069-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49103486       49238579  NM_001302082         BEND5
1    chr1   49103486       49238579  NM_001323575         AGBL4
2    chr1  143731704      144470935  NM_001123068       PPIAL4G
3    chr1  143731704      144470935  NM_001135789       PPIAL4C
4    chr1  143731704      144470935  NM_001278267        NBPF20
5    chr1  143731704      144470935  NM_001287385        FAM72C
6    chr1  143731704      144470935  NM_001345942        FAM72D
10   chr1  143731704      144470935     NR_024511     LINC00623
12   chr1  143731704      144470935     NR_104014     LINC01138
13   chr1  143731704      144470935     NR_111953     LINC00869
15   chr2  110216016      110507163  NM_001099289        SH3RF3
16   chr2  110216016      110507163  NM_001321504        SEPT10
18   chr2  110216016      110507163     NM_023016        SOWAHC
19  chr20   14737522       14943674     NM_080676       MACROD2
20  chr20   14737522       14943674     NR_037841   MACROD2-AS1
22   chr7   64030657       64153918  NM_001282360        ZNF107
23   chr7   64030657       64153918     NR_033245     LOC641746
24   chr7   64030657       64153918     NR_077227  LOC100128885
26   chr7   64030657       64153918     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21848179       22280410  NM_001001912      OR4E2
1   chr14   21848179       22280410  NM_001005465     OR10G3
2   chr14   21848179       22280410  NM_001005466     OR10G2
3   chr14   21848179       22280410  NM_001163380      RAB2B
4   chr14   21848179       22280410  NM_001170629       CHD8
5   chr14   21848179       22280410  NM_001303523       TOX4
6   chr14   21848179       22280410  NM_001317107      OR4E1
7   chr14   21848179       22280410     NM_007192    SUPT16H
8   chr14   21848179       22280410     NM_019852     METTL3
11  chr14   21848179       22280410     NR_002916     SNORD8
12  chr14   21848179       22280410     NR_003029     SNORD9
13  chr14   21848179       22280410     NR_111966      SALL2
15  chr15   28583359       28714327     NR_033351    GOLGA8F
16  chr15   28583359       28714327     NR_033353    GOLGA8G
17  chr15   28583359       28714327     NR_039734  MIR4509-3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr19      91182         303303  NM_001005240        OR4F17
1   chr19      91182         303303     NM_177526         PLPP2
3   chr19      91182         303303     NR_028324     LINC01002
4   chr22   19034196       20628258     NM_000407         GP1BB
5   chr22   19034196       20628258     NM_000754          COMT
6   chr22   19034196       20628258  NM_001009939         SEPT5
7   chr22   19034196       20628258  NM_001035247         UFD1L
10  chr22   19034196       20628258  NM_001166242      C22orf39
11  chr22   19034196       20628258  NM_001178010         CDC45
12  chr22   19034196       20628258  NM_001184781         DGCR2
13  chr22   19034196       20628258  NM_001190326         DGCR8
14  chr22   19034196       20628258  NM_001242313      TMEM191B
15  chr22   19034196       20628258  NM_001243537       CCDC188
16  chr22   19034196       20628258  NM_001256534       SLC25A1
17  chr22   19034196       20628258  NM_001278639        RANBP1
20  chr22   19034196       20628258  NM_001282512        TXNRD2
21  chr22   19034196       20628258  NM_001283116        TANGO2
22  chr22   19034196       20628258  NM_001318151        MRPL40
26  chr22   19034196       20628258     NM_001670         ARVCF
27  chr22   19034196       20628258     NM_001835        CLTCL1
29  chr22   19034196       20628258     NM_003277         CLDN5
30  chr22   19034196       20628258     NM_003325          HIRA
32  chr22   19034196       20628258     NM_005315          GSC2
34  chr22   19034196       20628258     NM_005992          TBX1
37  chr22   19034196       20628258     NM_013373        ZDHHC8
38  chr22   19034196       20628258     NM_015672        RIMBP3
39  chr22   19034196       20628258     NM_022719        DGCR14
40  chr22   19034196       20628258     NM_022727        TRMT2A
41  chr22   19034196       20628258     NM_023004         RTN4R
42  chr22   19034196       20628258     NM_024627      C22orf29
43  chr22   19034196       20628258     NM_033257        DGCR6L
44  chr22   19034196       20628258     NM_053004         GNB1L
45  chr22   19034196       20628258     NM_053006         TSSK2
49  chr22   19034196       20628258     NR_003563       PI4KAP1
50  chr22   19034196       20628258     NR_024157        DGCR11
51  chr22   19034196       20628258     NR_024381     LINC00895
52  chr22   19034196       20628258     NR_026919     LINC00896
53  chr22   19034196       20628258     NR_029706        MIR185
54  chr22   19034196       20628258     NR_031618       MIR1286
55  chr22   19034196       20628258     NR_031706       MIR1306
56  chr22   19034196       20628258     NR_037412       MIR3618
57  chr22   19034196       20628258     NR_037611   SEPT5-GP1BB
59  chr22   19034196       20628258     NR_038460     LOC284865
60  chr22   19034196       20628258     NR_039918       MIR4761
61  chr22   19034196       20628258     NR_103767     LINC01311
62  chr22   19034196       20628258     NR_106874       MIR6816
63  chr22   19034196       20628258     NR_136560       FAM230A
64  chr22   19034196       20628258     NR_136572  LOC101927859
65   chr4   94123982       94260772     NM_001510         GRID2
66   chr7  110619575      110743560  NM_001099658         LRRN3
67   chr7  110619575      110743560  NM_001244606        IMMP2L
69   chr7  117519635      117916855     NM_016200          LSM8
70   chr7  117519635      117916855     NM_019644        ANKRD7,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr10   81439081       82457962     NM_000429          MAT1A
1   chr10   81439081       82457962  NM_001012973          PLAC9
2   chr10   81439081       82457962  NM_001128309        TSPAN14
3   chr10   81439081       82457962  NM_001145719         SH2D4B
4   chr10   81439081       82457962  NM_001243778        FAM213A
7   chr10   81439081       82457962  NM_001269053          DYDC1
8   chr10   81439081       82457962  NM_001270041          DYDC2
10  chr10   81439081       82457962  NM_001270367        TMEM254
13  chr10   81439081       82457962  NM_001278407         ANXA11
15  chr10   81439081       82457962  NM_001278495         NUTM2B
17  chr10   81439081       82457962     NM_003019          SFTPD
20  chr10   81439081       82457962     NR_002724          MBL1P
21  chr10   81439081       82457962     NR_027431    TMEM254-AS1
22  chr10   81439081       82457962     NR_027512        BEND3P3
23  chr10   81439081       82457962     NR_029407      LOC642361
24  chr10   81439081       82457962     NR_033857        BMS1P21
25  chr10   81439081       82457962     NR_038464      LINC00857
26  chr10   81439081       82457962     NR_120611     NUTM2B-AS1
29  chr10   81439081       82457962     NR_120661   LOC101929574
30  chr10   81439081       82457962     NR_120662   LOC102723703
31  chr10   81439081       82457962     NR_136612   LOC100130698
33  chr14   21771921       22057887  NM_001005465         OR10G3
34  chr14   21771921       22057887  NM_001163380          RAB2B
35  chr14   21771921       22057887  NM_001170629           CHD8
36  chr14   21771921       22057887  NM_001303523           TOX4
37  chr14   21771921       22057887     NM_007192        SUPT16H
38  chr14   21771921       22057887     NM_019852         METTL3
39  chr14   21771921       22057887     NM_020366        RPGRIP1
42  chr14   21771921       22057887     NR_002916         SNORD8
43  chr14   21771921       22057887     NR_003029         SNORD9
..    ...        ...            ...           ...            ...
52  chr16    6338710        6477575  NM_001308117         RBFOX1
54  chr16   14776747       15296016  NM_001270767          NTAN1
55  chr16   14776747       15296016  NM_001277323         NPIPA3
57  chr16   14776747       15296016  NM_001277324         NPIPA2
59  chr16   14776747       15296016  NM_001285445         PDXDC1
64  chr16   14776747       15296016  NM_001301064           RRN3
66  chr16   14776747       15296016     NM_006985         NPIPA1
67  chr16   14776747       15296016     NM_014287          NOMO1
68  chr16   14776747       15296016     NR_023387        ABCC6P2
69  chr16   14776747       15296016     NR_036140      MIR3179-1
70  chr16   14776747       15296016     NR_036141      MIR3180-1
71  chr16   14776747       15296016     NR_036142      MIR3180-2
72  chr16   14776747       15296016     NR_037466      MIR3180-4
73  chr16   14776747       15296016     NR_103772   LOC100288162
74  chr16   14776747       15296016     NR_106775      MIR6511B1
75  chr16   14776747       15296016     NR_106965      MIR6511B2
76  chr16   14776747       15296016     NR_106970      MIR6511A3
77  chr16   14776747       15296016     NR_107060      MIR6770-2
78  chr16   14776747       15296016     NR_123721  PKD1P6-NPIPP1
80  chr16   14776747       15296016     NR_125434   LOC100505915
81  chr16   14776747       15296016     NR_128713      MIR3670-4
82  chr16   14776747       15296016     NR_133651        PLA2G10
83   chr4    9019349        9254034  NM_001256852       USP17L10
84   chr4    9019349        9254034  NM_001256853       USP17L12
85   chr4    9019349        9254034  NM_001256854       USP17L11
87   chr4    9019349        9254034  NM_001256855       USP17L13
88   chr4    9019349        9254034  NM_001256857       USP17L17
89   chr4    9019349        9254034  NM_001256894       USP17L15
90   chr7  110681000      110828313  NM_001099658          LRRN3
91   chr7  110681000      110828313  NM_001244606         IMMP2L

[65 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12798194       13041198  NM_001009611      PRAMEF4
1    chr1   12798194       13041198  NM_001010889      PRAMEF6
2    chr1   12798194       13041198  NM_001010890      PRAMEF9
3    chr1   12798194       13041198  NM_001012276      PRAMEF8
4    chr1   12798194       13041198  NM_001013631     HNRNPCL1
5    chr1   12798194       13041198  NM_001080830     PRAMEF12
6    chr1   12798194       13041198  NM_001099850     PRAMEF18
7    chr1   12798194       13041198  NM_001100631     PRAMEF22
8    chr1   12798194       13041198  NM_001146181     HNRNPCL3
9    chr1   12798194       13041198  NM_001146344     PRAMEF11
10   chr1   12798194       13041198  NM_001294139      PRAMEF1
11   chr1   12798194       13041198  NM_001302551     HNRNPCL4
13   chr1   12798194       13041198     NM_023014      PRAMEF2
14   chr1   12798194       13041198     NM_152290     C1orf158
15  chr20   14673032       15048262     NM_080676      MACROD2
16  chr20   14673032       15048262     NR_037841  MACROD2-AS1
18   chr4   93274507       93393066     NM_001510        GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   99177014       99349316  NM_001243270         CNTN5
2   chr14   21760639       21942723  NM_001163380         RAB2B
3   chr14   21760639       21942723  NM_001170629          CHD8
4   chr14   21760639       21942723     NM_007192       SUPT16H
5   chr14   21760639       21942723     NM_020366       RPGRIP1
8   chr14   21760639       21942723     NR_002916        SNORD8
9   chr14   21760639       21942723     NR_003029        SNORD9
10  chr16    9243355        9647573     NR_126349     LINC01195
11  chr16    9243355        9647573     NR_126397     LINC01177
12  chr16    9243355        9647573     NR_135195  LOC101927009
13  chr16   80793559       80999711     NM_152342         CDYL2
14  chr16   80793559       80999711     NR_131948       PRCAT47
15   chr2   25199732       25534268  NM_001319099         EFR3B
16   chr2   25199732       25534268  NM_001319205          POMC
17   chr2   25199732       25534268  NM_001320892        DNMT3A
24   chr2   25199732       25534268     NR_034113   DNAJC27-AS1
25   chr2   25199732       25534268     NR_132378     LINC01381
26   chr4   11760281       12348119     NR_125910  LOC101929019
27   chr4   69321277       69447246     NM_001077       UGT2B17
28   chr4   69321277       69447246     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108412573      108584183     NM_006113          VAV3
1    chr1  108412573      108584183     NR_046653      VAV3-AS1
2    chr1  108412573      108584183     NR_107006       MIR7852
3   chr14   21815497       23134009  NM_001001912         OR4E2
4   chr14   21815497       23134009  NM_001005465        OR10G3
5   chr14   21815497       23134009  NM_001005466        OR10G2
6   chr14   21815497       23134009  NM_001163380         RAB2B
7   chr14   21815497       23134009  NM_001170629          CHD8
8   chr14   21815497       23134009  NM_001303523          TOX4
9   chr14   21815497       23134009  NM_001317107         OR4E1
10  chr14   21815497       23134009     NM_001344          DAD1
11  chr14   21815497       23134009     NM_007192       SUPT16H
12  chr14   21815497       23134009     NM_019852        METTL3
13  chr14   21815497       23134009     NM_020366       RPGRIP1
15  chr14   21815497       23134009     NM_022060         ABHD4
17  chr14   21815497       23134009     NR_002916        SNORD8
18  chr14   21815497       23134009     NR_003029        SNORD9
19  chr14   21815497       23134009     NR_111966         SALL2
21   chr2   51274011       51536967     NR_135237     LOC730100
22  chr21   23107982       23538874     NR_038400     LINC00308
23  chr21   23107982       23538874     NR_038872     LINC00317
24  chr21   23107982       23538874     NR_109958     LINC01425
25  chr21   23107982       23538874     NR_109959  LOC101927843,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  117314459      117473088     NM_207303        ATRNL1
1   chr16   18304019       18588441  NM_001004060         NOMO2
2   chr16   18304019       18588441  NM_001282511        NPIPA8
3   chr16   18304019       18588441     NR_003569       ABCC6P1
4   chr16   18304019       18588441     NR_036140     MIR3179-1
5   chr16   18304019       18588441     NR_036142     MIR3180-2
6   chr16   18304019       18588441     NR_036144     MIR3180-3
7   chr16   18304019       18588441     NR_037442     MIR3670-1
8   chr16   18304019       18588441     NR_103772  LOC100288162
9   chr16   18304019       18588441     NR_106971     MIR6511A4
10  chr16   18304019       18588441     NR_107060     MIR6770-2
11   chr2   97219443       97356528  NM_001115016        KANSL3
12   chr2   97219443       97356528  NM_001293083        FER1L5
14  chr20   14666708       15141348     NM_080676       MACROD2
15  chr20   14666708       15141348     NR_037841   MACROD2-AS1,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr14   21922173       22033758  NM_001163380       RAB2B
1  chr14   21922173       22033758  NM_001303523        TOX4
2  chr14   21922173       22033758     NM_019852      METTL3
4  chr14   21922173       22033758     NR_111966       SALL2
6   chr9  137533801      137672699     NM_000093      COL5A1
7   chr9  137533801      137672699     NR_138049  COL5A1-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21891626       22047565  NM_001005465     OR10G3
1   chr14   21891626       22047565  NM_001163380      RAB2B
2   chr14   21891626       22047565  NM_001170629       CHD8
3   chr14   21891626       22047565  NM_001303523       TOX4
4   chr14   21891626       22047565     NM_019852     METTL3
7   chr14   21891626       22047565     NR_111966      SALL2
9    chr3  163738039      163909722     NR_031665    MIR1263
10   chr4  188273532      188387267     NR_038931  LOC339975,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11    4830230        5043693  NM_001004748    OR51A2
1   chr11    4830230        5043693  NM_001004749    OR51A7
2   chr11    4830230        5043693  NM_001004753    OR51F2
3   chr11    4830230        5043693  NM_001004755    OR51L1
4   chr11    4830230        5043693  NM_001004758    OR51S1
5   chr11    4830230        5043693  NM_001004759    OR51T1
6   chr11    4830230        5043693  NM_001005237    OR51G1
7   chr11    4830230        5043693  NM_001005238    OR51G2
8   chr11    4830230        5043693  NM_001005329    OR51A4
9   chr11    4830230        5043693     NM_021801     MMP26
10  chr13  113036389      113163184  NM_001286278   TUBGCP3
12  chr13  113036389      113163184     NM_145248    SPACA7
13  chr14   21940329       22205878  NM_001001912     OR4E2
14  chr14   21940329       22205878  NM_001005465    OR10G3
15  chr14   21940329       22205878  NM_001005466    OR10G2
16  chr14   21940329       22205878  NM_001163380     RAB2B
17  chr14   21940329       22205878  NM_001303523      TOX4
18  chr14   21940329       22205878  NM_001317107     OR4E1
19  chr14   21940329       22205878     NM_019852    METTL3
21  chr14   21940329       22205878     NR_111966     SALL2
23   chr4  169244197      169414553  NM_001012967    DDX60L
25   chr7  110680088      110922638  NM_001099658     LRRN3
26   chr7  110680088      110922638  NM_001244606    IMMP2L
28   chr9   28628566       28892255  NM_001258282    LINGO2
30   chr9   28628566       28892255     NR_030597    MIR876
31   chr9   28628566       28892255     NR_030618    MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20688448       20895914  NM_001145004      GOLGA6L6
1   chr15   20688448       20895914     NR_027411      GOLGA8CP
2   chr15   20688448       20895914     NR_027992        NBEAP1
3   chr15   20688448       20895914     NR_036432       HERC2P3
4   chr16   16396137       16716990  NM_001282511        NPIPA8
5   chr16   16396137       16716990     NR_036141     MIR3180-1
6   chr16   16396137       16716990     NR_036142     MIR3180-2
7   chr16   16396137       16716990     NR_036447        PKD1P1
8   chr16   16396137       16716990     NR_103772  LOC100288162
9   chr16   16396137       16716990     NR_106766     MIR6511A1
10  chr16   16396137       16716990     NR_106971     MIR6511A4
11  chr16   16396137       16716990     NR_107060     MIR6770-2
12  chr16   16396137       16716990     NR_128713     MIR3670-4
13   chr7   12147852       12434549  NM_001134232      TMEM106B
14   chr7   12147852       12434549  NM_001135924          VWDE
15   chr7   57013994       57415493     NM_033273        ZNF479
16   chr7   57013994       57415493     NR_030766       GUSBP10
17   chr7   57013994       57415493     NR_036246     MIR4283-1
18   chr7   57013994       57415493     NR_136269  LOC105375297,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21677645       21797590     NM_020366       RPGRIP1
1   chr14   21677645       21797590     NM_031314        HNRNPC
2   chr16   21469037       21979120  NM_001077180        METTL9
3   chr16   21469037       21979120  NM_001161683          OTOA
5   chr16   21469037       21979120  NM_001310148        NPIPB4
6   chr16   21469037       21979120     NM_003366        UQCRC2
7   chr16   21469037       21979120     NM_005849         IGSF6
10  chr16   21469037       21979120     NR_002594      SLC7A5P2
11  chr16   21469037       21979120     NR_003370        RRN3P1
12  chr16   21469037       21979120     NR_027155        SMG1P3
13  chr16   21469037       21979120     NR_049833     MIR3680-2
14  chr16   21469037       21979120     NR_110930  LOC101927814,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   83377962       84825738     NM_052910       SLITRK1
1   chr13   83377962       84825738     NR_046871     LINC00333
2   chr15   52777360       52898490  NM_001142495         MYO5A
3   chr15   52777360       52898490  NM_001286495       FAM214A
4   chr15   52777360       52898490  NM_001306191        ARPP19
9    chr9   67109491       67300889     NR_002817        AQP7P1
10   chr9   67109491       67300889     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67990628       68122597  NM_001127384        CTNNA3
2   chr11   48369147       49816923  NM_001005512        OR4A47
3   chr11   48369147       49816923  NM_001005513        OR4C45
4   chr11   48369147       49816923  NM_001193472         FOLH1
5   chr11   48369147       49816923  NM_001206626       TRIM49B
6   chr11   48369147       49816923  NM_001206631       TRIM64C
7   chr11   48369147       49816923     NR_027044     LOC440040
8   chr15   98198488       98309357     NR_024172     LINC00923
9    chr2  131935917      132075418  NM_001083538         POTEE
10   chr2  131935917      132075418     NR_030728     LOC440910
11   chr9   67154586       67347986     NR_002817        AQP7P1
12   chr9   67154586       67347986     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   51486115       52652313  NM_001142495         MYO5A
1   chr15   51486115       52652313  NM_001142885         TMOD2
2   chr15   51486115       52652313  NM_001143917        LYSMD2
3   chr15   51486115       52652313  NM_001174117         DMXL2
4   chr15   51486115       52652313  NM_001286430          LEO1
5   chr15   51486115       52652313  NM_001330297          GLDN
6   chr15   51486115       52652313     NM_002748         MAPK6
7   chr15   51486115       52652313     NM_006578          GNB5
8   chr15   51486115       52652313     NM_013243          SCG3
9   chr15   51486115       52652313     NM_014547         TMOD3
11  chr15   51486115       52652313     NM_018728         MYO5C
12  chr15   51486115       52652313     NM_020396       BCL2L10
13  chr15   51486115       52652313     NM_031226       CYP19A1
16  chr15   51486115       52652313     NR_031670       MIR1266
17  chr15   51486115       52652313     NR_039863       MIR4713
18  chr15   51486115       52652313     NR_102751  LOC100129973
19  chr15   51486115       52652313     NR_107012     MIR7973-1
20  chr15   51486115       52652313     NR_107013     MIR7973-2
21  chr15   51486115       52652313     NR_109775  LOC100422556
22  chr16   29529315       29641435     NR_049833     MIR3680-2
23  chr16   29529315       29641435     NR_135305        SMG1P2
25  chr20   14640290       15085977     NM_080676       MACROD2
26  chr20   14640290       15085977     NR_037841   MACROD2-AS1
28   chr6  140441545      140572176     NR_037441       MIR3668
29   chr8  111869777      112015372     NR_125416     LINC01608,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12816324       12961528  NM_001009611       PRAMEF4
1    chr1   12816324       12961528  NM_001013631      HNRNPCL1
2    chr1   12816324       12961528  NM_001080830      PRAMEF12
3    chr1   12816324       12961528  NM_001146181      HNRNPCL3
4    chr1   12816324       12961528  NM_001146344      PRAMEF11
5    chr1   12816324       12961528  NM_001294139       PRAMEF1
6    chr1   12816324       12961528  NM_001302551      HNRNPCL4
8    chr1   12816324       12961528     NM_023014       PRAMEF2
9    chr1   12816324       12961528     NM_152290      C1orf158
10  chr12     754950        1176191  NM_001297419         RAD52
14  chr12     754950        1176191  NM_001301248          ERC1
15  chr12     754950        1176191     NM_016533         NINJ2
16  chr12     754950        1176191     NM_018979          WNK1
18  chr12     754950        1176191     NR_122124  LOC100049716
19  chr16   18311214       18499825  NM_001282511        NPIPA8
20  chr16   18311214       18499825     NR_036142     MIR3180-2
21  chr16   18311214       18499825     NR_036144     MIR3180-3
22  chr16   18311214       18499825     NR_037442     MIR3670-1
23  chr16   18311214       18499825     NR_103772  LOC100288162
24  chr16   18311214       18499825     NR_106971     MIR6511A4
25  chr16   18311214       18499825     NR_107060     MIR6770-2
26   chr4    8982347        9237316  NM_001256852      USP17L10
27   chr4    8982347        9237316  NM_001256853      USP17L12
28   chr4    8982347        9237316  NM_001256854      USP17L11
29   chr4    8982347        9237316  NM_001256855      USP17L13
30   chr4    8982347        9237316  NM_001256894      USP17L15
31   chr7    6836815        6938518  NM_001099697      RSPH10B2
32   chr7    6836815        6938518     NM_198097         CCZ1B,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr2  131985949      132092706  NM_001083538      POTEE
1   chr2  131985949      132092706     NR_030728  LOC440910
2  chr22   17243951       17462357  NM_001037814       GAB4
3  chr22   17243951       17462357     NM_175878       XKR3
4  chr22   17243951       17462357     NR_003607    HSFY1P1
5   chr7    3349381        3501160     NM_152744       SDK1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr12   89338116       89689108     NR_038385    LOC728084
1   chr16   29554315       29658999     NR_049833    MIR3680-2
2   chr16   29554315       29658999     NR_135305       SMG1P2
4   chr20   14697809       16073116  NM_001033087      MACROD2
6   chr20   14697809       16073116     NR_037841  MACROD2-AS1
8   chr20   14697809       16073116     NR_130924    LOC613266
10   chr9   39090767       39195383     NM_033655      CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21886681       22172849  NM_001001912         OR4E2
1   chr14   21886681       22172849  NM_001005465        OR10G3
2   chr14   21886681       22172849  NM_001005466        OR10G2
3   chr14   21886681       22172849  NM_001163380         RAB2B
4   chr14   21886681       22172849  NM_001170629          CHD8
5   chr14   21886681       22172849  NM_001303523          TOX4
6   chr14   21886681       22172849  NM_001317107         OR4E1
7   chr14   21886681       22172849     NM_019852        METTL3
10  chr14   21886681       22172849     NR_111966         SALL2
12   chr4  128777941      128902664  NM_001190801          PLK4
13   chr4  128777941      128902664  NM_001319305        ABHD18
15   chr4  128777941      128902664     NM_152778         MFSD8
16   chr6  162706696      170437857  NM_001029863      C6orf120
17   chr6  162706696      170437857  NM_001040000          AFDN
18   chr6  162706696      170437857  NM_001080378         PACRG
20   chr6  162706696      170437857  NM_001122841         FRMD1
21   chr6  162706696      170437857  NM_001129895        HGC6.3
22   chr6  162706696      170437857  NM_001130690        PDE10A
23   chr6  162706696      170437857  NM_001143947        UNC93A
24   chr6  162706696      170437857  NM_001145121       TCP10L2
25   chr6  162706696      170437857  NM_001202550         WDR27
27   chr6  162706696      170437857  NM_001270484             T
28   chr6  162706696      170437857  NM_001270879          MPC1
29   chr6  162706696      170437857  NM_001278531        ERMARD
30   chr6  162706696      170437857  NM_001286351         DACT2
32   chr6  162706696      170437857  NM_001318936       RPS6KA2
34   chr6  162706696      170437857     NM_003247         THBS2
35   chr6  162706696      170437857     NM_003730       RNASET2
36   chr6  162706696      170437857     NM_004367          CCR6
37   chr6  162706696      170437857     NM_004610         TCP10
..    ...        ...            ...           ...           ...
57   chr6  162706696      170437857     NR_026860     LINC00473
59   chr6  162706696      170437857     NR_027284     LINC00602
60   chr6  162706696      170437857     NR_027906      AFDN-AS1
61   chr6  162706696      170437857     NR_028390     PACRG-AS1
62   chr6  162706696      170437857     NR_031734       MIR1913
63   chr6  162706696      170437857     NR_033862  DKFZp451B082
64   chr6  162706696      170437857     NR_037504       MIR3939
65   chr6  162706696      170437857     NR_037593          CAHM
66   chr6  162706696      170437857     NR_040022  LOC100289495
67   chr6  162706696      170437857     NR_046644   RPS6KA2-AS1
68   chr6  162706696      170437857     NR_046793   RPS6KA2-IT1
69   chr6  162706696      170437857     NR_103750     KIF25-AS1
70   chr6  162706696      170437857     NR_106988     MIR7641-2
72   chr6  162706696      170437857     NR_110870  LOC101929420
73   chr6  162706696      170437857     NR_110871     PACRG-AS2
75   chr6  162706696      170437857     NR_117091     LOC401286
76   chr6  162706696      170437857     NR_117092     LOC441178
77   chr6  162706696      170437857     NR_122120     PACRG-AS3
78   chr6  162706696      170437857     NR_125862  LOC101929297
79   chr6  162706696      170437857     NR_125863  LOC101929504
80   chr6  162706696      170437857     NR_131926         MEAT6
81   chr6  162706696      170437857     NR_132622     LINC01615
83   chr6  162706696      170437857     NR_134590  LOC105378137
84   chr6  162706696      170437857     NR_134591  LOC105378127
85   chr6  162706696      170437857     NR_134592  LOC105378123
86   chr6  162706696      170437857     NR_134619  LOC102724357
87   chr6  162706696      170437857     NR_134620  LOC102724152
88   chr6  162706696      170437857     NR_134621  LOC101929523
89   chr6  162706696      170437857     NR_134622  LOC101929460
90   chr6  162706696      170437857     NR_136248  LOC105378146

[75 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   86698065       87095581  NM_001168724       TMEM135
1   chr11   86698065       87095581     NR_038905  LOC100506368
2   chr14   21811075       21959676  NM_001163380         RAB2B
3   chr14   21811075       21959676  NM_001170629          CHD8
4   chr14   21811075       21959676  NM_001303523          TOX4
5   chr14   21811075       21959676     NM_007192       SUPT16H
6   chr14   21811075       21959676     NM_020366       RPGRIP1
9   chr14   21811075       21959676     NR_002916        SNORD8
10  chr14   21811075       21959676     NR_003029        SNORD9
11  chr18   40239999       40359710     NM_002930          RIT2
12  chr18   40239999       40359710     NR_046174     LINC00907
13  chr22   19044375       19249113  NM_001184781         DGCR2
14  chr22   19044375       19249113  NM_001256534       SLC25A1
15  chr22   19044375       19249113     NM_001835        CLTCL1
16  chr22   19044375       19249113     NM_005315          GSC2
18  chr22   19044375       19249113     NM_022719        DGCR14
19  chr22   19044375       19249113     NM_053006         TSSK2
20  chr22   19044375       19249113     NR_103767     LINC01311,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245015592      245357167  NM_001143943        EFCAB2
2    chr1  245015592      245357167     NM_004501        HNRNPU
3    chr1  245015592      245357167     NM_018012        KIF26B
5    chr1  245015592      245357167     NR_111907  LOC101928068
6    chr1  245015592      245357167     NR_132782      SNORA100
7   chr10   67707715       67880884  NM_001127384        CTNNA3
9   chr11  132241178      132371352  NM_001012393         OPCML
12  chr14   21791427       21983805  NM_001163380         RAB2B
13  chr14   21791427       21983805  NM_001170629          CHD8
14  chr14   21791427       21983805  NM_001303523          TOX4
15  chr14   21791427       21983805     NM_007192       SUPT16H
16  chr14   21791427       21983805     NM_019852        METTL3
17  chr14   21791427       21983805     NM_020366       RPGRIP1
20  chr14   21791427       21983805     NR_002916        SNORD8
21  chr14   21791427       21983805     NR_003029        SNORD9
22   chr6  140834980      141626136     NR_039675       MIR4465
23   chr9  103342039      103535934  NM_001018116          MURC,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142549426      142772193     NR_046228   ANKRD20A12P
1   chr11   60253753       60414362  NM_001278320        MS4A13
2   chr11   60253753       60414362     NM_017716        MS4A12
3   chr11   60253753       60414362     NR_026946     LINC00301
4   chr20   10823114       10939277     NR_109866  LOC101929413
5   chr22   17234024       17575599  NM_001037814          GAB4
6   chr22   17234024       17575599  NM_001289905        IL17RA
7   chr22   17234024       17575599     NM_175878          XKR3
8   chr22   17234024       17575599     NR_003607       HSFY1P1
9   chr22   17234024       17575599     NR_015352         CECR7
10   chr7  110788893      110905943  NM_001244606        IMMP2L
12   chr7  153855968      154048346  NM_001039350          DPP6,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   87963173       88146326     NR_033829  MIR4500HG
1  chr14   21927931       22029634  NM_001163380      RAB2B
2  chr14   21927931       22029634  NM_001303523       TOX4
3  chr14   21927931       22029634     NM_019852     METTL3
5  chr14   21927931       22029634     NR_111966      SALL2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21845893       22033632  NM_001163380     RAB2B
1   chr14   21845893       22033632  NM_001170629      CHD8
2   chr14   21845893       22033632  NM_001303523      TOX4
3   chr14   21845893       22033632     NM_007192   SUPT16H
4   chr14   21845893       22033632     NM_019852    METTL3
7   chr14   21845893       22033632     NR_002916    SNORD8
8   chr14   21845893       22033632     NR_003029    SNORD9
9   chr14   21845893       22033632     NR_111966     SALL2
11  chr15   30290876       30421358  NM_001282472   GOLGA8J
12  chr15   30290876       30421358     NR_026859    ULK4P3
13   chr7    6773147        7095038  NM_001099697  RSPH10B2
14   chr7    6773147        7095038     NM_198097     CCZ1B
15   chr7    6773147        7095038     NR_002217    PMS2CL
16   chr7  110784954      111213379  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr17   21873712       21984136     NR_027084  FLJ36000
1  chr22   19002025       19153410  NM_001184781     DGCR2
2  chr22   19002025       19153410     NM_005315      GSC2
3  chr22   19002025       19153410     NM_022719    DGCR14
4  chr22   19002025       19153410     NM_053006     TSSK2
5  chr22   19002025       19153410     NR_024157    DGCR11
6  chr22   19002025       19153410     NR_024159     DGCR9
7  chr22   19002025       19153410     NR_026651    DGCR10
8  chr22   19002025       19153410     NR_110533     DGCR5
9   chr9  119679013      119877020     NM_014010     ASTN2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12792522       12936629  NM_001013631     HNRNPCL1
1    chr1   12792522       12936629  NM_001080830     PRAMEF12
2    chr1   12792522       12936629  NM_001146181     HNRNPCL3
3    chr1   12792522       12936629  NM_001146344     PRAMEF11
4    chr1   12792522       12936629  NM_001294139      PRAMEF1
5    chr1   12792522       12936629  NM_001302551     HNRNPCL4
7    chr1   12792522       12936629     NM_023014      PRAMEF2
8    chr1   12792522       12936629     NM_152290     C1orf158
9   chr14   21924927       22025708  NM_001163380        RAB2B
10  chr14   21924927       22025708  NM_001303523         TOX4
11  chr14   21924927       22025708     NM_019852       METTL3
13  chr14   21924927       22025708     NR_111966        SALL2
15  chr16   15452974       15932173  NM_001040113        MYH11
16  chr16   15452974       15932173  NM_001128423       MPV17L
17  chr16   15452974       15932173  NM_001142469     C16orf45
18  chr16   15452974       15932173  NM_001143979         NDE1
19  chr16   15452974       15932173  NM_001184998     KIAA0430
20  chr16   15452974       15932173  NM_001277325       NPIPA5
23  chr16   15452974       15932173     NR_030159       MIR484
24  chr16   15452974       15932173     NR_106761      MIR6506
25  chr16   21752956       22234203  NM_001161683         OTOA
26  chr16   21752956       22234203  NM_001164579     C16orf52
27  chr16   21752956       22234203  NM_001310148       NPIPB4
28  chr16   21752956       22234203     NM_003366       UQCRC2
29  chr16   21752956       22234203     NM_013302        EEF2K
32  chr16   21752956       22234203     NM_173615        VWA3A
33  chr16   21752956       22234203     NM_173806        PDZD9
34  chr16   21752956       22234203     NR_003370       RRN3P1
35  chr16   61053876       61228121     NR_039624      MIR4426
36  chr19   21407485       22255429  NM_001001415       ZNF429
37  chr19   21407485       22255429  NM_001256650        ZNF43
38  chr19   21407485       22255429  NM_001297560       ZNF708
40  chr19   21407485       22255429  NM_001329971       ZNF208
45  chr19   21407485       22255429     NM_033468       ZNF257
46  chr19   21407485       22255429     NM_145326       ZNF493
47  chr19   21407485       22255429     NM_173531       ZNF100
49  chr19   21407485       22255429     NR_024523    LOC641367
50  chr19   21407485       22255429     NR_027130       ZNF738
51  chr19   21407485       22255429     NR_037194    LINC00664
53  chr20   14885515       15043469     NM_080676      MACROD2
54  chr20   14885515       15043469     NR_037841  MACROD2-AS1
56   chr7    8578201        8894141     NM_152745        NXPH1, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   68625681       69115387  NM_001317184       CDH1
1  chr16   68625681       69115387  NM_001317195       CDH3
2  chr16   68625681       69115387     NM_024562     TANGO6
3  chr16   68625681       69115387     NR_106988  MIR7641-2
4   chr2   51182360       51412022  NM_001330079      NRXN1
7   chr2   51182360       51412022     NR_135237  LOC730100
8  chr21   22378765       22484607     NM_004540      NCAM2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67943308       68159762  NM_001127384    CTNNA3
2   chr14   21787412       21936214  NM_001163380     RAB2B
3   chr14   21787412       21936214  NM_001170629      CHD8
4   chr14   21787412       21936214     NM_007192   SUPT16H
5   chr14   21787412       21936214     NM_020366   RPGRIP1
8   chr14   21787412       21936214     NR_002916    SNORD8
9   chr14   21787412       21936214     NR_003029    SNORD9
10  chr14   75188202       75410858  NM_001080408     PROX2
11  chr14   75188202       75410858  NM_001207012       PGF
12  chr14   75188202       75410858  NM_001244883      DLST
13  chr14   75188202       75410858  NM_001318508      FCF1
16  chr14   75188202       75410858     NM_019589     YLPM1
17  chr14   75188202       75410858     NM_031464   RPS6KL1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12824028       12937916  NM_001013631      HNRNPCL1
1    chr1   12824028       12937916  NM_001080830      PRAMEF12
2    chr1   12824028       12937916  NM_001146181      HNRNPCL3
3    chr1   12824028       12937916  NM_001146344      PRAMEF11
4    chr1   12824028       12937916  NM_001294139       PRAMEF1
5    chr1   12824028       12937916  NM_001302551      HNRNPCL4
7    chr1   12824028       12937916     NM_023014       PRAMEF2
8    chr1   72276047       72396506     NM_173808         NEGR1
9    chr1   72276047       72396506     NR_046218     NEGR1-IT1
10   chr1   97393841       97554152     NM_000110          DPYD
11  chr10   67874491       68607331  NM_001127384        CTNNA3
13  chr11   37860863       38018876     NR_135110  LOC105376633
14   chr3  111612836      111735033  NM_001008273        TAGLN3
15   chr3  111612836      111735033  NM_001134437        PHLDB2
17   chr3  111612836      111735033  NM_001272069        ABHD10
20   chr4   69323197       69519855     NM_001076       UGT2B15
21   chr4   69323197       69519855     NM_001077       UGT2B17
22   chr4   69323197       69519855     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21894207       22188283  NM_001001912         OR4E2
1   chr14   21894207       22188283  NM_001005465        OR10G3
2   chr14   21894207       22188283  NM_001005466        OR10G2
3   chr14   21894207       22188283  NM_001163380         RAB2B
4   chr14   21894207       22188283  NM_001170629          CHD8
5   chr14   21894207       22188283  NM_001303523          TOX4
6   chr14   21894207       22188283  NM_001317107         OR4E1
7   chr14   21894207       22188283     NM_019852        METTL3
10  chr14   21894207       22188283     NR_111966         SALL2
12  chr14   39118254       39228282     NR_039982     LINC00639
13  chr15   30272026       30530556  NM_001282472       GOLGA8J
14  chr15   30272026       30530556     NR_026771  DKFZP434L187
15  chr15   30272026       30530556     NR_026859        ULK4P3
16  chr15   30272026       30530556     NR_033933       GOLGA8T
17  chr17   78181469       78292216     NM_000199          SGSH
18  chr17   78181469       78292216  NM_001166349      SLC26A11
19  chr17   78181469       78292216  NM_001256071        RNF213
21  chr17   78181469       78292216     NM_024110        CARD14
23   chr2   50811820       50971123  NM_001330082         NRXN1
24   chr2   50811820       50971123     NR_130470       MIR8485
25   chr5  119519847      120297768  NM_001300783         PRR16,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67270511       67442010     NM_000695       ALDH3B2
1   chr11   67270511       67442010     NM_000852         GSTP1
3   chr11   67270511       67442010  NM_001166102        NDUFV1
4   chr11   67270511       67442010  NM_001243750         NUDT8
5   chr11   67270511       67442010  NM_001318496         CABP2
6   chr11   67270511       67442010     NM_004910       PITPNM1
7   chr11   67270511       67442010     NM_005851       CDK2AP2
8   chr11   67270511       67442010     NM_005995         TBX10
9   chr11   67270511       67442010     NM_080658          ACY3
11  chr11   67270511       67442010     NR_033791        DOC2GP
13  chr11   67270511       67442010     NR_130935      C11orf72
14  chr12    5096892        5505757     NM_002234         KCNA5
15  chr12    5096892        5505757     NR_120476  LOC101929584
17  chr14   21751505       22977620  NM_001001912         OR4E2
18  chr14   21751505       22977620  NM_001005465        OR10G3
19  chr14   21751505       22977620  NM_001005466        OR10G2
20  chr14   21751505       22977620  NM_001163380         RAB2B
21  chr14   21751505       22977620  NM_001170629          CHD8
22  chr14   21751505       22977620  NM_001303523          TOX4
23  chr14   21751505       22977620  NM_001317107         OR4E1
24  chr14   21751505       22977620     NM_007192       SUPT16H
25  chr14   21751505       22977620     NM_019852        METTL3
26  chr14   21751505       22977620     NM_020366       RPGRIP1
29  chr14   21751505       22977620     NR_002916        SNORD8
30  chr14   21751505       22977620     NR_003029        SNORD9
31  chr14   21751505       22977620     NR_111966         SALL2
33   chr9   39061119       39202754     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81523788       81797201     NM_003019       SFTPD
1   chr10   81523788       81797201     NR_002724       MBL1P
2   chr10   81523788       81797201     NR_029407   LOC642361
3   chr10   81523788       81797201     NR_033857     BMS1P21
4   chr10   81523788       81797201     NR_120611  NUTM2B-AS1
7   chr11   40344785       40562897  NM_001258419      LRRC4C
8   chr14   21552968       21922227  NM_001004731      OR5AU1
9   chr14   21552968       21922227  NM_001101672      ZNF219
11  chr14   21552968       21922227  NM_001146683     TMEM253
12  chr14   21552968       21922227  NM_001170629        CHD8
13  chr14   21552968       21922227  NM_001278529    ARHGEF40
14  chr14   21552968       21922227     NM_007192     SUPT16H
16  chr14   21552968       21922227     NM_020366     RPGRIP1
18  chr14   21552968       21922227     NM_031314      HNRNPC
19  chr14   21552968       21922227     NR_002916      SNORD8
20  chr14   21552968       21922227     NR_003029      SNORD9
21  chr14   21552968       21922227     NR_038970   LINC00641
23  chr19   21427252       21580125  NM_001297560      ZNF708
26  chr19   21427252       21580125     NM_145326      ZNF493
28  chr19   21427252       21580125     NR_027130      ZNF738
29  chr20   41081141       41237776     NM_133170       PTPRT
30   chr5  161081247      161181545     NM_000811      GABRA6
31   chr7   64154678       65505036     NM_000181        GUSB
32   chr7   64154678       65505036  NM_001007253      ERV3-1
33   chr7   64154678       65505036  NM_001160183      ZNF138
34   chr7   64154678       65505036  NM_001282360      ZNF107
35   chr7   64154678       65505036  NM_001287532       ZNF92
37   chr7   64154678       65505036     NM_015852      ZNF117
38   chr7   64154678       65505036     NM_021148      ZNF273
39   chr7   64154678       65505036     NM_173517    VKORC1L1
40   chr7   64154678       65505036     NR_002961     SNORA22
41   chr7   64154678       65505036     NR_003110      CCT6P1
42   chr7   64154678       65505036     NR_027392     INTS4P2
43   chr7   64154678       65505036     NR_033416      CCT6P3
44   chr7   64154678       65505036     NR_038378   LOC441242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28628743       29880575  NM_001130414         APBA2
1   chr15   28628743       29880575  NM_001282468       GOLGA8M
2   chr15   28628743       29880575     NM_015307      FAM189A1
3   chr15   28628743       29880575     NM_138704        NSMCE3
4   chr15   28628743       29880575     NR_026589       WHAMMP2
5   chr15   28628743       29880575     NR_033351       GOLGA8F
7   chr15   28628743       29880575     NR_033353       GOLGA8G
9   chr15   28628743       29880575     NR_036443       HERC2P9
10  chr15   28628743       29880575     NR_036475  LOC100289656
11  chr15   28628743       29880575     NR_037599     PDCD6IPP2
12  chr15   28628743       29880575     NR_039734     MIR4509-3
14  chr15   28628743       29880575     NR_047567     GOLGA6L7P
15  chr16   31922006       32032753  NM_001265588        ZNF267
16   chr7   18618802       18821708  NM_001204144         HDAC9
24   chr7   68574779       69323679  NM_001127231         AUTS2
26   chr7   68574779       69323679     NR_108105  LOC100507468
27   chr8    3715508        3892882     NM_033225         CSMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28811607       29073205  NM_001282468       GOLGA8M
1   chr15   28811607       29073205     NR_026589       WHAMMP2
2   chr15   28811607       29073205     NR_036443       HERC2P9
3   chr15   28811607       29073205     NR_036475  LOC100289656
4   chr15   28811607       29073205     NR_037599     PDCD6IPP2
5    chr3   80779059       81109699     NR_132411     LOC728290
6    chr7  110658412      110760265  NM_001099658         LRRN3
7    chr7  110658412      110760265  NM_001244606        IMMP2L
9    chr9  132353122      132525745  NM_001286796         NTMT1
13   chr9  132353122      132525745     NM_004878         PTGES
14   chr9  132353122      132525745     NM_016307         PRRX2
15   chr9  132353122      132525745     NM_177999          ASB6
16   chr9  132353122      132525745     NM_199350       C9orf50
17   chr9  132353122      132525745     NR_132102     PRRX2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   64862780       65540521  NM_001004326      SLC22A20
1   chr11   64862780       65540521  NM_001008778         SPDYC
2   chr11   64862780       65540521  NM_001099409       EHBP1L1
3   chr11   64862780       65540521  NM_001130144         LTBP3
4   chr11   64862780       65540521  NM_001198868         CAPN1
6   chr11   64862780       65540521  NM_001243984          RELA
7   chr11   64862780       65540521  NM_001277233        TM7SF2
8   chr11   64862780       65540521  NM_001278250      SLC25A45
10  chr11   64862780       65540521  NM_001303024        SSSCA1
11  chr11   64862780       65540521  NM_001330308          DPF2
12  chr11   64862780       65540521     NM_001997           FAU
13  chr11   64862780       65540521     NM_002419       MAP3K11
14  chr11   64862780       65540521     NM_002689         POLA2
16  chr11   64862780       65540521     NM_006388          KAT5
17  chr11   64862780       65540521     NM_006747         SIPA1
18  chr11   64862780       65540521     NM_006779      CDC42EP2
19  chr11   64862780       65540521     NM_013265         VPS51
20  chr11   64862780       65540521     NM_014205        ZNHIT2
21  chr11   64862780       65540521     NM_020680         SCYL1
22  chr11   64862780       65540521     NM_031904         FRMD8
23  chr11   64862780       65540521     NM_032193      RNASEH2C
24  chr11   64862780       65540521     NM_032223         PCNX3
25  chr11   64862780       65540521     NM_032431         SYVN1
26  chr11   64862780       65540521     NM_033348         KCNK7
27  chr11   64862780       65540521     NM_145719         TIGD3
28  chr11   64862780       65540521     NM_152832        FAM89B
31  chr11   64862780       65540521     NR_002819        MALAT1
32  chr11   64862780       65540521     NR_028272         NEAT1
33  chr11   64862780       65540521     NR_030343        MIR612
35  chr11   64862780       65540521     NR_037567        MRPL49
37  chr11   64862780       65540521     NR_038923    SSSCA1-AS1
38  chr11   64862780       65540521     NR_039709       MIR4489
39  chr11   64862780       65540521     NR_039839       MIR4690
41  chr11   64862780       65540521     NR_106809       MIR6751
43  chr16   16399008       16960310  NM_001282511        NPIPA8
44  chr16   16399008       16960310     NR_036141     MIR3180-1
45  chr16   16399008       16960310     NR_036142     MIR3180-2
46  chr16   16399008       16960310     NR_036447        PKD1P1
47  chr16   16399008       16960310     NR_103772  LOC100288162
48  chr16   16399008       16960310     NR_106766     MIR6511A1
49  chr16   16399008       16960310     NR_106971     MIR6511A4
50  chr16   16399008       16960310     NR_107060     MIR6770-2
51  chr16   16399008       16960310     NR_128713     MIR3670-4
52  chr16   31873863       32007696  NM_001265588        ZNF267
53  chr18   55820785       55952866  NM_001144964        NEDD4L
58   chr5  125560591      125672946     NR_105039  LOC101927488
59   chr7   29512199       29679105  NM_001293069          CHN2
63   chr7   29512199       29679105  NM_001329997         PRR15
66   chr7   64074123       64384900  NM_001160183        ZNF138
67   chr7   64074123       64384900  NM_001282360        ZNF107
68   chr7   64074123       64384900     NM_021148        ZNF273
70   chr7   64074123       64384900     NR_077227  LOC100128885
72   chr7   64074123       64384900     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16    6738103        6856806  NM_001142334     RBFOX1
3   chr16   18461891       18898388  NM_001004060      NOMO2
4   chr16   18461891       18898388     NM_001019     RPS15A
5   chr16   18461891       18898388  NM_001313858    ARL6IP1
6   chr16   18461891       18898388     NM_015092       SMG1
8   chr16   18461891       18898388     NR_003569    ABCC6P1
9   chr16   18461891       18898388     NR_036140  MIR3179-1
10  chr16   18461891       18898388     NR_036142  MIR3180-2
11  chr16   18461891       18898388     NR_036144  MIR3180-3
12  chr16   18461891       18898388     NR_037442  MIR3670-1
13  chr16   18461891       18898388     NR_107060  MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152970157      153073824  NM_001017418        SPRR2B
1    chr1  152970157      153073824  NM_001024209        SPRR2E
2    chr1  152970157      153073824     NM_003125        SPRR1B
3    chr1  152970157      153073824     NM_005416         SPRR3
4    chr1  152970157      153073824     NM_005988        SPRR2A
5    chr1  152970157      153073824     NM_006945        SPRR2D
6   chr19   34509226       34945723  NM_001289789           GPI
9   chr19   34509226       34945723     NM_005499          UBA2
10  chr19   34509226       34945723     NM_014686      KIAA0355
11  chr19   34509226       34945723     NM_015578        LSM14A
12  chr19   34509226       34945723     NM_032346        PDCD2L
13  chr20   14714928       14947740     NM_080676       MACROD2
14  chr20   14714928       14947740     NR_037841   MACROD2-AS1
16   chr4  169200847      169992003  NM_001012967        DDX60L
17   chr4  169200847      169992003  NM_001166108         PALLD
21   chr4  169200847      169992003     NM_017631         DDX60
22   chr4  169200847      169992003     NM_032783          CBR4
23   chr7   64044010       64145468  NM_001282360        ZNF107
24   chr7   64044010       64145468     NR_033245     LOC641746
25   chr7   64044010       64145468     NR_077227  LOC100128885
27   chr7   64044010       64145468     NR_106898       MIR6839
28   chr7  143034485      143134683     NM_000083         CLCN1
29   chr7  143034485      143134683  NM_001278297       FAM131B
30   chr7  143034485      143134683  NM_001322263  LOC100507507
31   chr7  143034485      143134683     NM_003461           ZYX
32   chr7  143034485      143134683     NM_005232         EPHA1
34   chr7  143034485      143134683     NR_033897     EPHA1-AS1
35   chr7  143034485      143134683     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   20769553       20899418  NM_001288713         NELL1
1   chr15   28754752       29252592  NM_001130414         APBA2
2   chr15   28754752       29252592  NM_001282468       GOLGA8M
3   chr15   28754752       29252592     NR_026589       WHAMMP2
4   chr15   28754752       29252592     NR_033351       GOLGA8F
5   chr15   28754752       29252592     NR_033353       GOLGA8G
6   chr15   28754752       29252592     NR_036443       HERC2P9
7   chr15   28754752       29252592     NR_036475  LOC100289656
8   chr15   28754752       29252592     NR_037599     PDCD6IPP2
9   chr15   28754752       29252592     NR_047567     GOLGA6L7P
10  chr15   87233770       87346195     NM_152336         AGBL1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17263086       17651266  NM_001037814          GAB4
1   chr22   17263086       17651266  NM_001163079         CECR6
2   chr22   17263086       17651266  NM_001289905        IL17RA
3   chr22   17263086       17651266     NM_017829         CECR5
6   chr22   17263086       17651266     NM_175878          XKR3
7   chr22   17263086       17651266     NR_003607       HSFY1P1
8   chr22   17263086       17651266     NR_015352         CECR7
9   chr22   17263086       17651266     NR_024482     CECR5-AS1
10  chr22   17263086       17651266     NR_103793  LOC100996342,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10   67996274       68116668  NM_001127384        CTNNA3
2  chr10   67950168       68378593  NM_001127384        CTNNA3
4  chr16   21541522       21689583  NM_001077180        METTL9
6  chr16   21541522       21689583     NM_005849         IGSF6
7  chr16   21541522       21689583     NR_110930  LOC101927814
8  chr20   14799810       15090715     NM_080676       MACROD2
9  chr20   14799810       15090715     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11    4154366        4668907  NM_001004137         OR52M1
1   chr11    4154366        4668907  NM_001004751         OR51D1
2   chr11    4154366        4668907  NM_001005161         OR52B4
3   chr11    4154366        4668907  NM_001005169         OR52I1
4   chr11    4154366        4668907  NM_001005170         OR52I2
5   chr11    4154366        4668907  NM_001005171         OR52K1
6   chr11    4154366        4668907  NM_001005172         OR52K2
7   chr11    4154366        4668907     NM_001033           RRM1
9   chr11    4154366        4668907     NM_003141         TRIM21
10  chr11    4154366        4668907     NM_018073         TRIM68
11  chr11    4154366        4668907     NM_144663       C11orf40
12  chr11    4154366        4668907     NM_152430         OR51E1
13  chr11    4154366        4668907     NR_047550   LOC100506082
14  chr11   67308498       67459883     NM_000695        ALDH3B2
15  chr11   67308498       67459883     NM_000852          GSTP1
17  chr11   67308498       67459883  NM_001166102         NDUFV1
18  chr11   67308498       67459883  NM_001243750          NUDT8
19  chr11   67308498       67459883     NM_005995          TBX10
20  chr11   67308498       67459883     NM_080658           ACY3
22  chr11   67308498       67459883     NR_033791         DOC2GP
23  chr11   67308498       67459883     NR_130935       C11orf72
24  chr14   37975994       38361467  NM_001195296         MIPOL1
25  chr14   37975994       38361467  NM_001310135           TTC6
26  chr14   37975994       38361467     NM_004496          FOXA1
27  chr16   15142930       15272113  NM_001270767          NTAN1
28  chr16   15142930       15272113  NM_001285449         PDXDC1
29  chr16   15142930       15272113  NM_001301064           RRN3
31  chr16   15142930       15272113     NR_037466      MIR3180-4
32  chr16   15142930       15272113     NR_106775      MIR6511B1
33  chr16   15142930       15272113     NR_106965      MIR6511B2
34  chr16   15142930       15272113     NR_123721  PKD1P6-NPIPP1
36  chr16   15142930       15272113     NR_125434   LOC100505915
37  chr16   18455292       18636487  NM_001004060          NOMO2
38  chr16   18455292       18636487     NR_003569        ABCC6P1
39  chr16   18455292       18636487     NR_036140      MIR3179-1
40  chr16   18455292       18636487     NR_036142      MIR3180-2
41  chr16   18455292       18636487     NR_036144      MIR3180-3
42  chr16   18455292       18636487     NR_037442      MIR3670-1
43  chr16   18455292       18636487     NR_107060      MIR6770-2
44  chr22   20134352       20588325  NM_001242313       TMEM191B
45  chr22   20134352       20588325  NM_001243537        CCDC188
46  chr22   20134352       20588325     NM_013373         ZDHHC8
47  chr22   20134352       20588325     NM_015672         RIMBP3
48  chr22   20134352       20588325     NM_023004          RTN4R
49  chr22   20134352       20588325     NM_033257         DGCR6L
50  chr22   20134352       20588325     NR_003563        PI4KAP1
51  chr22   20134352       20588325     NR_026919      LINC00896
52  chr22   20134352       20588325     NR_031618        MIR1286
53  chr22   20134352       20588325     NR_038460      LOC284865
54  chr22   20134352       20588325     NR_136560        FAM230A
55  chr22   20134352       20588325     NR_136572   LOC101927859
56   chr7   12214378       12409055  NM_001134232       TMEM106B
57   chr7   12214378       12409055  NM_001135924           VWDE,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143469325      144336210  NM_001123068       PPIAL4G
1    chr1  143469325      144336210  NM_001278267        NBPF20
2    chr1  143469325      144336210  NM_001287385        FAM72C
3    chr1  143469325      144336210  NM_001345942        FAM72D
7    chr1  143469325      144336210     NR_024511     LINC00623
9    chr1  143469325      144336210     NR_104014     LINC01138
10   chr1  143469325      144336210     NR_106967       MIR6077
11   chr1  143469325      144336210     NR_111930  LOC100132057
12   chr1  143469325      144336210     NR_111953     LINC00869
14  chr16   21739250       21857994  NM_001161683          OTOA
15  chr16   21739250       21857994  NM_001310148        NPIPB4
18  chr16   21739250       21857994     NR_003370        RRN3P1
19   chr2  133794189      133945778     NM_207363        NCKAP5
20   chr4   71331052       71510328  NM_001145006          MUC7
22   chr4   71331052       71510328  NM_001286731          AMTN
23   chr4   71331052       71510328     NM_016519          AMBN
24   chr4   71331052       71510328     NM_031889          ENAM,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   77797747       78017694  NM_001301186        LINGO1
10  chr15   77797747       78017694     NR_045123    LINGO1-AS1
11  chr15   77797747       78017694     NR_120361    LINGO1-AS2
12  chr15   77797747       78017694     NR_135692  LOC101929457
13  chr16   16445956       16949578  NM_001282511        NPIPA8
14  chr16   16445956       16949578     NR_106971     MIR6511A4
15   chr3  131223323      131385459  NM_001289112         CPNE4
18   chr7  110574248      110679196  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  131974457      132383560  NM_001012393         OPCML
1   chr11  131974457      132383560  NM_001048209           NTM
6   chr11  131974457      132383560     NR_046820        NTM-IT
7   chr13   22373543       22490250     NR_047040     LINC00424
8   chr16   14988855       15092453  NM_001285445        PDXDC1
14  chr16   14988855       15092453     NM_006985        NPIPA1
15  chr16   14988855       15092453     NM_014287         NOMO1
16  chr16   14988855       15092453     NR_036140     MIR3179-1
17  chr16   14988855       15092453     NR_036141     MIR3180-1
18  chr16   14988855       15092453     NR_036142     MIR3180-2
19  chr16   14988855       15092453     NR_103772  LOC100288162
20  chr16   14988855       15092453     NR_106970     MIR6511A3
21  chr16   14988855       15092453     NR_107060     MIR6770-2
22  chr16   14988855       15092453     NR_128713     MIR3670-4
23  chr16   29544349       29644371     NR_049833     MIR3680-2
24  chr16   29544349       29644371     NR_135305        SMG1P2
26  chr19   47849417       48088114  NM_001009813         MEIS3
27  chr19   47849417       48088114  NM_001277075        ZNF541
28  chr19   47849417       48088114  NM_001291296          KPTN
31  chr19   47849417       48088114     NM_014681         DHX34
32  chr19   47849417       48088114     NM_015063        SLC8A2
33  chr19   47849417       48088114     NR_038452      NAPA-AS1
34  chr19   47849417       48088114     NR_038457          NAPA
35   chr2   52183803       52284710     NR_135237     LOC730100
36  chr20   14791909       14953201     NM_080676       MACROD2
37  chr20   14791909       14953201     NR_037841   MACROD2-AS1
39  chr22   17220173       17361752     NM_175878          XKR3
40  chr22   17220173       17361752     NR_003607       HSFY1P1
41  chr22   17220173       17361752     NR_134584  LOC101929350
42   chr7  110698204      110816576  NM_001099658         LRRN3
43   chr7  110698204      110816576  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145357092      145607680  NM_001012758        NUDT17
1    chr1  145357092      145607680  NM_001039888      ANKRD34A
2    chr1  145357092      145607680  NM_001184795        PEX11B
3    chr1  145357092      145607680  NM_001277444         NBPF9
4    chr1  145357092      145607680  NM_001278267        NBPF20
5    chr1  145357092      145607680  NM_001280799       ANKRD35
6    chr1  145357092      145607680  NM_001302371        NBPF10
7    chr1  145357092      145607680  NM_001303040        ITGA10
8    chr1  145357092      145607680  NM_001303456        POLR3C
9    chr1  145357092      145607680  NM_001313972         TXNIP
11   chr1  145357092      145607680     NM_005105         RBM8A
12   chr1  145357092      145607680     NM_006099         PIAS3
15   chr1  145357092      145607680     NM_032305       POLR3GL
16   chr1  145357092      145607680     NM_145277          HFE2
17   chr1  145357092      145607680     NM_153713         LIX1L
18   chr1  145357092      145607680     NR_002328        GNRHR2
22   chr1  145357092      145607680     NR_104217       NBPF25P
23   chr1  145357092      145607680     NR_106794       MIR6736
24   chr1  145357092      145607680     NR_125967  LOC101928979
25  chr11   48438680       48937150  NM_001005512        OR4A47
26  chr14   27020205       27301074     NM_002515         NOVA1
28  chr14   27020205       27301074     NR_110033  LOC101927062
29  chr14   27020205       27301074     NR_110556  LOC102724890,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72564605       72710126     NM_013381         TRHDE
1   chr12   72564605       72710126     NR_026836     TRHDE-AS1
3   chr12   72637777       72745447     NM_013381         TRHDE
4   chr12   72637777       72745447     NR_026836     TRHDE-AS1
6   chr14   47856841       48298271  NM_001113498         MDGA2
7   chr14   47856841       48298271     NR_037503       MIR548Y
8   chr14   47856841       48298271     NR_039996     LINC00648
9   chr14   67476955       67733416  NM_001256550          MPP5
10  chr14   67476955       67733416     NM_020806          GPHN
11  chr14   67476955       67733416     NM_173526        FAM71D
12   chr2  133579119      133692450     NM_207363        NCKAP5
13   chr2  133579119      133692450     NR_135572  LOC101928185
14   chr2  186501419      186781724     NM_173651         FSIP2
15   chr2  186501419      186781724     NR_110214  LOC101927196
18   chr2  186501419      186781724     NR_144453     FSIP2-AS1
20   chr4    9027588        9244352  NM_001256852      USP17L10
21   chr4    9027588        9244352  NM_001256853      USP17L12
22   chr4    9027588        9244352  NM_001256854      USP17L11
23   chr4    9027588        9244352  NM_001256855      USP17L13
24   chr4    9027588        9244352  NM_001256894      USP17L15,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   81488126       81676788     NR_029407    LOC642361
1   chr10   81488126       81676788     NR_033857      BMS1P21
2   chr10   81488126       81676788     NR_120611   NUTM2B-AS1
5   chr14   21828549       21936725  NM_001163380        RAB2B
6   chr14   21828549       21936725  NM_001170629         CHD8
7   chr14   21828549       21936725     NM_007192      SUPT16H
10  chr14   21828549       21936725     NR_002916       SNORD8
11  chr14   21828549       21936725     NR_003029       SNORD9
12  chr20   14878900       14982060     NM_080676      MACROD2
13  chr20   14878900       14982060     NR_037841  MACROD2-AS1
15   chr5  146433911      146579104  NM_001271899      PPP2R2B,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr19   33708135       33817862  NM_001285829      CEBPA
1  chr19   33708135       33817862     NM_019849    SLC7A10
2  chr19   33708135       33817862     NR_026887  CEBPA-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12795065       12897267  NM_001080830      PRAMEF12
1    chr1   12795065       12897267  NM_001146344      PRAMEF11
2    chr1   12795065       12897267  NM_001294139       PRAMEF1
4    chr1   12795065       12897267     NM_152290      C1orf158
5   chr16   68590380       68754429  NM_001305204         ZFP90
7   chr16   68590380       68754429  NM_001317195          CDH3
8   chr22   17208678       17435863     NM_175878          XKR3
9   chr22   17208678       17435863     NR_003607       HSFY1P1
10  chr22   17208678       17435863     NR_134584  LOC101929350
11   chr4      64965         419942  NM_001039127        ZNF718
12   chr4      64965         419942  NM_001137608        ZNF732
13   chr4      64965         419942  NM_001286052        ZNF595
16   chr4      64965         419942     NM_003441        ZNF141
17   chr4      64965         419942     NR_002451       ABCA11P
18   chr4      64965         419942     NR_027481       ZNF876P
19   chr4      64965         419942     NR_030297        MIR571
22   chr6    9972909       10958488  NM_001032280        TFAP2A
23   chr6    9972909       10958488  NM_001040274        SYCP2L
25   chr6    9972909       10958488  NM_001127711       TMEM14B
26   chr6    9972909       10958488  NM_001165258       TMEM14C
28   chr6    9972909       10958488     NM_001491         GCNT2
30   chr6    9972909       10958488     NM_004752          GCM2
31   chr6    9972909       10958488     NM_005906           MAK
32   chr6    9972909       10958488     NM_017906       PAK1IP1
35   chr6    9972909       10958488     NR_026736       C6orf52
37   chr6    9972909       10958488     NR_027793     LINC00518
38   chr6    9972909       10958488     NR_033910    TFAP2A-AS1
39   chr6    9972909       10958488     NR_049872       MIR5689
40   chr6    9972909       10958488     NR_125851  LOC101928191
41   chr6    9972909       10958488     NR_132993     MIR5689HG
44   chr6   65561376       65664122  NM_001142800           EYS
45   chr9   28653686       28822713  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143149537      143774284  NM_001123068       PPIAL4G
1    chr1  143149537      143774284     NR_104014     LINC01138
2    chr1  143149537      143774284     NR_106967       MIR6077
3    chr1  143149537      143774284     NR_110761  LOC102723769
4    chr1  143149537      143774284     NR_111930  LOC100132057
5   chr10   55822654       55948619  NM_001142770        PCDH15
8   chr14   21821787       21934199  NM_001163380         RAB2B
9   chr14   21821787       21934199  NM_001170629          CHD8
10  chr14   21821787       21934199     NM_007192       SUPT16H
13  chr14   21821787       21934199     NR_002916        SNORD8
14  chr14   21821787       21934199     NR_003029        SNORD9
15   chr9    5966192        6634167     NM_000170          GLDC
16   chr9    5966192        6634167  NM_001001874       TPD52L3
17   chr9    5966192        6634167  NM_001017969      KIAA2026
18   chr9    5966192        6634167  NM_001199641          IL33
19   chr9    5966192        6634167  NM_001243202        RANBP6
23   chr9    5966192        6634167     NM_152896         UHRF2
24   chr9    5966192        6634167     NR_039811       MIR4665,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21790905       21941626  NM_001163380         RAB2B
1   chr14   21790905       21941626  NM_001170629          CHD8
2   chr14   21790905       21941626     NM_007192       SUPT16H
3   chr14   21790905       21941626     NM_020366       RPGRIP1
6   chr14   21790905       21941626     NR_002916        SNORD8
7   chr14   21790905       21941626     NR_003029        SNORD9
8    chr2  131941659      132296636  NM_001077637        WTH3DI
9    chr2  131941659      132296636  NM_001083538         POTEE
10   chr2  131941659      132296636  NM_001085365         MZT2A
11   chr2  131941659      132296636  NM_001258304       CCDC74A
12   chr2  131941659      132296636     NM_080386        TUBA3D
13   chr2  131941659      132296636     NR_002826       NOC2LP2
14   chr2  131941659      132296636     NR_026922     LOC150776
15   chr2  131941659      132296636     NR_030728     LOC440910
16   chr2  131941659      132296636     NR_036499     LINC01120
17   chr2  131941659      132296636     NR_039945       MIR4784
18   chr2  150900478      152077899  NM_001254738          RND3
20   chr2  150900478      152077899     NR_110241  LOC101929260
21   chr2  150900478      152077899     NR_110244  LOC101929282
23  chr22   20060914       20717610  NM_001190326         DGCR8
24  chr22   20060914       20717610  NM_001242313      TMEM191B
25  chr22   20060914       20717610  NM_001243537       CCDC188
26  chr22   20060914       20717610  NM_001278639        RANBP1
29  chr22   20060914       20717610     NM_013373        ZDHHC8
30  chr22   20060914       20717610     NM_015672        RIMBP3
31  chr22   20060914       20717610     NM_022727        TRMT2A
32  chr22   20060914       20717610     NM_023004         RTN4R
33  chr22   20060914       20717610     NM_033257        DGCR6L
34  chr22   20060914       20717610     NR_003563       PI4KAP1
35  chr22   20060914       20717610     NR_026919     LINC00896
36  chr22   20060914       20717610     NR_031618       MIR1286
37  chr22   20060914       20717610     NR_031706       MIR1306
38  chr22   20060914       20717610     NR_037412       MIR3618
39  chr22   20060914       20717610     NR_038460     LOC284865
40  chr22   20060914       20717610     NR_106874       MIR6816
41  chr22   20060914       20717610     NR_136560       FAM230A
42  chr22   20060914       20717610     NR_136569     LOC729461
43  chr22   20060914       20717610     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   21798897       22001702  NM_001163380       RAB2B
1   chr14   21798897       22001702  NM_001170629        CHD8
2   chr14   21798897       22001702  NM_001303523        TOX4
3   chr14   21798897       22001702     NM_007192     SUPT16H
4   chr14   21798897       22001702     NM_019852      METTL3
5   chr14   21798897       22001702     NM_020366     RPGRIP1
8   chr14   21798897       22001702     NR_002916      SNORD8
9   chr14   21798897       22001702     NR_003029      SNORD9
10  chr14   21798897       22001702     NR_111966       SALL2
12   chr2   69579516       69762335  NM_001244710       GFPT1
13   chr2   69579516       69762335     NM_014911        AAK1
14   chr2   69579516       69762335     NM_015700        NFU1
15   chr2   69579516       69762335     NR_003705    SNORA36C
16   chr7  110749142      110879865  NM_001099658       LRRN3
17   chr7  110749142      110879865  NM_001244606      IMMP2L
19   chr8    2045780        2178680     NM_003970       MYOM2
20   chr8    6991280        7171422     NR_003668  DEFB109P1B
21   chr8    6991280        7171422     NR_027000   LINC00965
24   chr8    6991280        7171422     NR_027423      FAM66B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   77883350       77994287  NM_001301186        LINGO1
10  chr15   77883350       77994287     NR_045123    LINGO1-AS1
11  chr15   77883350       77994287     NR_120361    LINGO1-AS2
12  chr22   17186474       17424578     NM_175878          XKR3
13  chr22   17186474       17424578     NR_003607       HSFY1P1
14  chr22   17186474       17424578     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21823690       21951787  NM_001163380      RAB2B
1   chr14   21823690       21951787  NM_001170629       CHD8
2   chr14   21823690       21951787  NM_001303523       TOX4
3   chr14   21823690       21951787     NM_007192    SUPT16H
6   chr14   21823690       21951787     NR_002916     SNORD8
7   chr14   21823690       21951787     NR_003029     SNORD9
8   chr15   28585009       28735985     NR_033351    GOLGA8F
9   chr15   28585009       28735985     NR_033353    GOLGA8G
10  chr15   28585009       28735985     NR_039734  MIR4509-3
12  chr21   22311640       22424176     NM_004540      NCAM2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   78253643       78370647     NR_110287  LOC101927948
1   chr2   78253643       78370647     NR_110288  LOC101927967
2  chr22   17254666       17525617  NM_001037814          GAB4
3  chr22   17254666       17525617     NM_175878          XKR3
4  chr22   17254666       17525617     NR_003607       HSFY1P1
5  chr22   17254666       17525617     NR_015352         CECR7
6   chr4   94137191       94316919     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  242675726      242886615     NM_152666          PLD5
1   chr15   28665360       28819476     NR_033351       GOLGA8F
2   chr15   28665360       28819476     NR_033353       GOLGA8G
3   chr15   28665360       28819476     NR_039734     MIR4509-3
5   chr16   16325303       16509653  NM_001004067         NOMO3
6   chr16   16325303       16509653  NM_001282511        NPIPA8
7   chr16   16325303       16509653     NR_036140     MIR3179-1
8   chr16   16325303       16509653     NR_036141     MIR3180-1
9   chr16   16325303       16509653     NR_036142     MIR3180-2
10  chr16   16325303       16509653     NR_036447        PKD1P1
11  chr16   16325303       16509653     NR_103772  LOC100288162
12  chr16   16325303       16509653     NR_106766     MIR6511A1
13  chr16   16325303       16509653     NR_106971     MIR6511A4
14  chr16   16325303       16509653     NR_107060     MIR6770-2
15  chr16   16325303       16509653     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102396442      102508592     NR_110211         OLFM3
1   chr10  135205150      135796305     NM_000773        CYP2E1
2   chr10  135205150      135796305  NM_001012508          SPRN
3   chr10  135205150      135796305  NM_001080998         FRG2B
4   chr10  135205150      135796305  NM_001143763         SYCE1
7   chr10  135205150      135796305     NM_138384          MTG1
8   chr10  135205150      135796305     NR_002934        SCART1
9   chr10  135205150      135796305     NR_033789        SPRNP1
10  chr10  135205150      135796305     NR_109766          PAOX
11  chr12   72687872       72813917     NM_013381         TRHDE
12  chr13   19680802       19880252     NM_006001        TUBA3C
13  chr13   19680802       19880252     NR_027248     ANKRD26P3
14  chr13   19680802       19880252     NR_126054  LOC101928697
15  chr15   28621957       29127541  NM_001282468       GOLGA8M
16  chr15   28621957       29127541     NR_026589       WHAMMP2
17  chr15   28621957       29127541     NR_033351       GOLGA8F
19  chr15   28621957       29127541     NR_033353       GOLGA8G
21  chr15   28621957       29127541     NR_036443       HERC2P9
22  chr15   28621957       29127541     NR_036475  LOC100289656
23  chr15   28621957       29127541     NR_037599     PDCD6IPP2
24  chr15   28621957       29127541     NR_039734     MIR4509-3
26  chr15   28621957       29127541     NR_047567     GOLGA6L7P
27  chr16   76536038       77054448  NM_001322181       CNTNAP4
29  chr16   76536038       77054448     NR_039870       MIR4719
30  chr16   76536038       77054448     NR_110934  LOC101928203,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21758019       22549661  NM_001001912      OR4E2
1   chr14   21758019       22549661  NM_001005465     OR10G3
2   chr14   21758019       22549661  NM_001005466     OR10G2
3   chr14   21758019       22549661  NM_001163380      RAB2B
4   chr14   21758019       22549661  NM_001170629       CHD8
5   chr14   21758019       22549661  NM_001303523       TOX4
6   chr14   21758019       22549661  NM_001317107      OR4E1
7   chr14   21758019       22549661     NM_007192    SUPT16H
8   chr14   21758019       22549661     NM_019852     METTL3
9   chr14   21758019       22549661     NM_020366    RPGRIP1
12  chr14   21758019       22549661     NR_002916     SNORD8
13  chr14   21758019       22549661     NR_003029     SNORD9
14  chr14   21758019       22549661     NR_111966      SALL2
16  chr19   21659525       21903166  NM_001001415     ZNF429
17  chr19   21659525       21903166     NR_037194  LINC00664
18   chr9   22387079       22670572     NM_022160     DMRTA1
19   chr9   22387079       22670572     NR_038977  LINC01239,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21757871       21862186  NM_001170629       CHD8
1   chr14   21757871       21862186     NM_007192    SUPT16H
2   chr14   21757871       21862186     NM_020366    RPGRIP1
4   chr14   21757871       21862186     NR_003029     SNORD9
5   chr14   42125596       42300057  NM_001346175      LRFN5
6    chr2  110129184      110261609  NM_001099289     SH3RF3
7    chr9   39113277       39866630  NM_001085452  SPATA31A1
8    chr9   39113277       39866630     NM_033655    CNTNAP3
9    chr9   39113277       39866630     NR_003528    ZNF658B
10   chr9   39113277       39866630     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21718077       21975522  NM_001163380     RAB2B
1   chr14   21718077       21975522  NM_001170629      CHD8
2   chr14   21718077       21975522  NM_001303523      TOX4
3   chr14   21718077       21975522     NM_007192   SUPT16H
4   chr14   21718077       21975522     NM_019852    METTL3
5   chr14   21718077       21975522     NM_020366   RPGRIP1
7   chr14   21718077       21975522     NM_031314    HNRNPC
9   chr14   21718077       21975522     NR_002916    SNORD8
10  chr14   21718077       21975522     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   86698055       87015934  NM_001168724       TMEM135
1   chr11   86698055       87015934     NR_038905  LOC100506368
2   chr14   21889605       22005768  NM_001163380         RAB2B
3   chr14   21889605       22005768  NM_001170629          CHD8
4   chr14   21889605       22005768  NM_001303523          TOX4
5   chr14   21889605       22005768     NM_019852        METTL3
8   chr14   21889605       22005768     NR_111966         SALL2
10  chr16    6734605        6887542  NM_001142334        RBFOX1
13  chr20   14725560       14837239     NM_080676       MACROD2
14   chr4   71344512       71477388  NM_001145006          MUC7
16   chr4   71344512       71477388  NM_001286731          AMTN
17   chr4   71344512       71477388     NM_016519          AMBN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   10581884       10932354  NM_001300739        MAGOHB
1   chr12   10581884       10932354  NM_001304448         KLRC1
3   chr12   10581884       10932354     NM_002260         KLRC2
4   chr12   10581884       10932354     NM_003651          YBX3
6   chr12   10581884       10932354     NM_018423         STYK1
8   chr12   10581884       10932354     NR_028045        KLRA1P
9   chr12   10581884       10932354     NR_120463  LOC101928162
10  chr15   82865224       83081678  NM_001164465     GOLGA6L10
11  chr15   82865224       83081678  NM_001291420      GOLGA6L9
13  chr15   82865224       83081678     NR_004847      UBE2Q2P2
14  chr15   82865224       83081678     NR_026811     GOLGA2P10
15  chr15   82865224       83081678     NR_045529     ADAMTS7P1
16  chr15   82865224       83081678     NR_102747     LOC727751
17  chr15   82865224       83081678     NR_111962    GOLGA6L17P
18  chr15   82865224       83081678     NR_120378  LOC102724034
19  chr20   14539456       15279577  NM_001033087       MACROD2
21  chr20   14539456       15279577     NR_037841   MACROD2-AS1
23  chr20   14539456       15279577     NR_104193   MACROD2-IT1
24  chr22   19041394       19150385  NM_001184781         DGCR2
25  chr22   19041394       19150385     NM_005315          GSC2
26  chr22   19041394       19150385     NM_022719        DGCR14
27  chr22   19041394       19150385     NM_053006         TSSK2
28   chr7   71462498       71595657  NM_001017440         CALN1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr17   48319672       48554395  NM_001166131        EME1
1   chr17   48319672       48554395  NM_001168215      TMEM92
2   chr17   48319672       48554395     NM_001267        CHAD
3   chr17   48319672       48554395  NM_001288968       ACSF2
4   chr17   48319672       48554395     NM_016504      MRPL27
5   chr17   48319672       48554395     NM_018509      LRRC59
6   chr17   48319672       48554395     NM_022167       XYLT2
9   chr17   48319672       48554395     NR_125805  TMEM92-AS1
10   chr7  110521896      111702803  NM_001099658       LRRN3
11   chr7  110521896      111702803  NM_001244606      IMMP2L
12   chr7  110521896      111702803     NM_014705       DOCK4
14   chr7  110521896      111702803     NR_103806   DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145287367      145602690  NM_001012758        NUDT17
1    chr1  145287367      145602690  NM_001039888      ANKRD34A
2    chr1  145287367      145602690  NM_001184795        PEX11B
3    chr1  145287367      145602690  NM_001277444         NBPF9
4    chr1  145287367      145602690  NM_001278267        NBPF20
5    chr1  145287367      145602690  NM_001280799       ANKRD35
6    chr1  145287367      145602690  NM_001302371        NBPF10
7    chr1  145287367      145602690  NM_001303040        ITGA10
8    chr1  145287367      145602690  NM_001303456        POLR3C
9    chr1  145287367      145602690  NM_001313972         TXNIP
11   chr1  145287367      145602690     NM_005105         RBM8A
12   chr1  145287367      145602690     NM_006099         PIAS3
15   chr1  145287367      145602690     NM_032305       POLR3GL
16   chr1  145287367      145602690     NM_145277          HFE2
17   chr1  145287367      145602690     NM_153713         LIX1L
18   chr1  145287367      145602690     NR_002328        GNRHR2
22   chr1  145287367      145602690     NR_104217       NBPF25P
23   chr1  145287367      145602690     NR_106794       MIR6736
24   chr1  145287367      145602690     NR_125967  LOC101928979
25  chr14   21834686       21940976  NM_001163380         RAB2B
26  chr14   21834686       21940976  NM_001170629          CHD8
27  chr14   21834686       21940976     NM_007192       SUPT16H
30  chr14   21834686       21940976     NR_002916        SNORD8
31  chr14   21834686       21940976     NR_003029        SNORD9
32   chr3   41371030       42861108     NM_000729           CCK
33   chr3   41371030       42861108  NM_001042646         TRAK1
34   chr3   41371030       42861108  NM_001099668        HIGD1A
37   chr3   41371030       42861108  NM_001201572        SEC22C
39   chr3   41371030       42861108  NM_001251882         VIPR1
44   chr3   41371030       42861108     NM_001296         ACKR2
45   chr3   41371030       42861108  NM_001304386         LYZL4
46   chr3   41371030       42861108  NM_001322500          ULK4
47   chr3   41371030       42861108     NM_005385          NKTR
49   chr3   41371030       42861108     NM_016305        SS18L2
51   chr3   41371030       42861108     NM_020707         HHATL
52   chr3   41371030       42861108     NM_144719        CCDC13
53   chr3   41371030       42861108     NM_145166        ZBTB47
54   chr3   41371030       42861108     NM_152393        KLHL40
56   chr3   41371030       42861108     NR_046654     VIPR1-AS1
57   chr3   41371030       42861108     NR_046732    CCDC13-AS1
58   chr3   41371030       42861108     NR_122070     LOC729083
59   chr3   41371030       42861108     NR_125400  LOC101928323,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144824115      145556955  NM_001002810       PDE4DIP
3    chr1  144824115      145556955  NM_001039888      ANKRD34A
4    chr1  144824115      145556955  NM_001184795        PEX11B
9    chr1  144824115      145556955  NM_001277444         NBPF9
10   chr1  144824115      145556955  NM_001278267        NBPF20
11   chr1  144824115      145556955  NM_001280799       ANKRD35
12   chr1  144824115      145556955  NM_001302371        NBPF10
13   chr1  144824115      145556955  NM_001303040        ITGA10
14   chr1  144824115      145556955  NM_001313972         TXNIP
16   chr1  144824115      145556955     NM_004892        SEC22B
17   chr1  144824115      145556955     NM_005105         RBM8A
20   chr1  144824115      145556955     NM_032305       POLR3GL
21   chr1  144824115      145556955     NM_145277          HFE2
22   chr1  144824115      145556955     NM_153713         LIX1L
23   chr1  144824115      145556955     NM_203458      NOTCH2NL
24   chr1  144824115      145556955     NR_002328        GNRHR2
26   chr1  144824115      145556955     NR_102405         NBPF8
29   chr1  144824115      145556955     NR_104217       NBPF25P
30   chr1  144824115      145556955     NR_125967  LOC101928979
31  chr11    4160778        4286117     NR_047550  LOC100506082
32  chr14   38218783       38637902  NM_001310135          TTC6
33  chr14   38218783       38637902     NR_135286     LINC00517
34  chr16    6759995        6962901  NM_001142334        RBFOX1
37  chr16   18302556       18513203  NM_001004060         NOMO2
38  chr16   18302556       18513203  NM_001282511        NPIPA8
39  chr16   18302556       18513203     NR_036140     MIR3179-1
40  chr16   18302556       18513203     NR_036142     MIR3180-2
41  chr16   18302556       18513203     NR_036144     MIR3180-3
42  chr16   18302556       18513203     NR_037442     MIR3670-1
43  chr16   18302556       18513203     NR_103772  LOC100288162
44  chr16   18302556       18513203     NR_106971     MIR6511A4
45  chr16   18302556       18513203     NR_107060     MIR6770-2
46   chr2  107684418      107794550     NR_049853      MIR548AU
47  chr22   17209961       17315331     NM_175878          XKR3
48  chr22   17209961       17315331     NR_003607       HSFY1P1
49  chr22   17209961       17315331     NR_134584  LOC101929350
50   chr4   48017146       48138752     NM_003215           TEC
51   chr4   48017146       48138752     NM_003328           TXK
52   chr4   48017146       48138752     NM_207330        NIPAL1
53   chr9  108518492      108705363     NM_018112       TMEM38B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   31396701       31628752  NM_001304274        IMMP1L
1   chr11   31396701       31628752     NM_019040          ELP4
2   chr11   31396701       31628752     NM_181706       DNAJC24
3   chr14   21663713       21773399     NM_020366       RPGRIP1
4   chr14   21663713       21773399     NM_031314        HNRNPC
5   chr14   21663713       21773399     NR_038970     LINC00641
7   chr20   14822935       14958699     NM_080676       MACROD2
8   chr20   14822935       14958699     NR_037841   MACROD2-AS1
10  chr22   20058152       20462947  NM_001190326         DGCR8
11  chr22   20058152       20462947  NM_001242313      TMEM191B
12  chr22   20058152       20462947  NM_001243537       CCDC188
13  chr22   20058152       20462947  NM_001278639        RANBP1
16  chr22   20058152       20462947     NM_013373        ZDHHC8
17  chr22   20058152       20462947     NM_015672        RIMBP3
18  chr22   20058152       20462947     NM_022727        TRMT2A
19  chr22   20058152       20462947     NM_023004         RTN4R
20  chr22   20058152       20462947     NM_033257        DGCR6L
21  chr22   20058152       20462947     NR_003563       PI4KAP1
22  chr22   20058152       20462947     NR_026919     LINC00896
23  chr22   20058152       20462947     NR_031618       MIR1286
24  chr22   20058152       20462947     NR_031706       MIR1306
25  chr22   20058152       20462947     NR_037412       MIR3618
26  chr22   20058152       20462947     NR_038460     LOC284865
27  chr22   20058152       20462947     NR_106874       MIR6816
28  chr22   20058152       20462947     NR_136560       FAM230A
29  chr22   20058152       20462947     NR_136572  LOC101927859
30   chr7   75087140       75374117  NM_001099415       POM121C
31   chr7   75087140       75374117  NM_001243198          HIP1
32   chr7   75087140       75374117  NM_001306141        SPDYE5
33   chr7   75087140       75374117     NR_028059        PMS2P3
34   chr7  110586426      110756496  NM_001099658         LRRN3
35   chr7  110586426      110756496  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   79111451       79794222  NM_001098816         TENM4
1   chr11   79111451       79794222     NR_030598        MIR708
2   chr11   79111451       79794222     NR_049841       MIR5579
3   chr15   28709462       29306869  NM_001130414         APBA2
4   chr15   28709462       29306869  NM_001282468       GOLGA8M
5   chr15   28709462       29306869     NR_026589       WHAMMP2
6   chr15   28709462       29306869     NR_033351       GOLGA8F
7   chr15   28709462       29306869     NR_033353       GOLGA8G
8   chr15   28709462       29306869     NR_036443       HERC2P9
9   chr15   28709462       29306869     NR_036475  LOC100289656
10  chr15   28709462       29306869     NR_037599     PDCD6IPP2
11  chr15   28709462       29306869     NR_039734     MIR4509-3
12  chr15   28709462       29306869     NR_047567     GOLGA6L7P
13  chr16   14728635       15024957  NM_001277323        NPIPA3
15  chr16   14728635       15024957  NM_001277324        NPIPA2
17  chr16   14728635       15024957     NM_014287         NOMO1
18  chr16   14728635       15024957     NM_016561          BFAR
19  chr16   14728635       15024957     NR_023387       ABCC6P2
20  chr16   14728635       15024957     NR_036140     MIR3179-1
21  chr16   14728635       15024957     NR_036141     MIR3180-1
22  chr16   14728635       15024957     NR_036142     MIR3180-2
23  chr16   14728635       15024957     NR_103772  LOC100288162
24  chr16   14728635       15024957     NR_106970     MIR6511A3
25  chr16   14728635       15024957     NR_107060     MIR6770-2
26  chr16   14728635       15024957     NR_128713     MIR3670-4
27  chr16   14728635       15024957     NR_133651       PLA2G10
28  chr17   48022541       48165574     NM_001934          DLX4
29  chr17   48022541       48165574     NM_002204         ITGA3
30  chr17   48022541       48165574     NM_005220          DLX3
32  chr17   48022541       48165574     NR_038230     LOC284080
33   chr2   62195222       62312272  NM_001321781        COMMD1
35   chr8   13693001       13964132     NM_139167          SGCZ,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   95902987       96006193     NM_032427     MAML2
1   chr14   21859118       23110950  NM_001001912     OR4E2
2   chr14   21859118       23110950  NM_001005465    OR10G3
3   chr14   21859118       23110950  NM_001005466    OR10G2
4   chr14   21859118       23110950  NM_001163380     RAB2B
5   chr14   21859118       23110950  NM_001170629      CHD8
6   chr14   21859118       23110950  NM_001303523      TOX4
7   chr14   21859118       23110950  NM_001317107     OR4E1
8   chr14   21859118       23110950     NM_001344      DAD1
9   chr14   21859118       23110950     NM_019852    METTL3
11  chr14   21859118       23110950     NM_022060     ABHD4
13  chr14   21859118       23110950     NR_002916    SNORD8
14  chr14   21859118       23110950     NR_003029    SNORD9
15  chr14   21859118       23110950     NR_111966     SALL2
17   chr5     151912         367745  NM_001080478   LRRC14B
18   chr5     151912         367745  NM_001242412      AHRR
19   chr5     151912         367745     NM_004168      SDHA
20   chr5     151912         367745     NM_013232     PDCD6
21   chr5     151912         367745     NM_052909  PLEKHG4B
22   chr5     151912         367745     NM_145265   CCDC127
24   chr5     151912         367745     NR_104613     HRAT5
25   chr7   64091941       64216047  NM_001282360    ZNF107
27   chr7   64091941       64216047     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16412389       16838396  NM_001282511        NPIPA8
1   chr16   16412389       16838396     NR_036447        PKD1P1
2   chr16   16412389       16838396     NR_103772  LOC100288162
3   chr16   16412389       16838396     NR_106766     MIR6511A1
4   chr16   16412389       16838396     NR_106971     MIR6511A4
5   chr16   16412389       16838396     NR_107060     MIR6770-2
6   chr20    8578969        8767186     NM_015192         PLCB1
7    chr4  145162897      146931066  NM_001003688         SMAD1
8    chr4  145162897      146931066  NM_001080531       C4orf51
9    chr4  145162897      146931066  NM_001102653         OTUD4
10   chr4  145162897      146931066  NM_001256706       ANAPC10
13   chr4  145162897      146931066     NM_002940         ABCE1
16   chr4  145162897      146931066     NM_022475          HHIP
17   chr4  145162897      146931066     NM_172250          MMAA
18   chr4  145162897      146931066     NM_178835        ZNF827
19   chr4  145162897      146931066     NR_037595      HHIP-AS1
20   chr4  145162897      146931066     NR_108077     SMAD1-AS2
21   chr4  145162897      146931066     NR_126371     SMAD1-AS1
22   chr7  110549034      110672981  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21767381       21972334  NM_001163380      RAB2B
1   chr14   21767381       21972334  NM_001170629       CHD8
2   chr14   21767381       21972334  NM_001303523       TOX4
3   chr14   21767381       21972334     NM_007192    SUPT16H
4   chr14   21767381       21972334     NM_019852     METTL3
5   chr14   21767381       21972334     NM_020366    RPGRIP1
8   chr14   21767381       21972334     NR_002916     SNORD8
9   chr14   21767381       21972334     NR_003029     SNORD9
10  chr15   66932197       67156106     NM_005585      SMAD6
11  chr15   66932197       67156106     NR_110372  LINC01169
12   chr2   56564145       57233675  NM_001080433    CCDC85A
13   chr5   20375308       20709767  NM_001291956      CDH18,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68015123       68188227  NM_001127384        CTNNA3
2   chr14   21773574       21880118  NM_001170629          CHD8
3   chr14   21773574       21880118     NM_007192       SUPT16H
4   chr14   21773574       21880118     NM_020366       RPGRIP1
6   chr14   21773574       21880118     NR_002916        SNORD8
7   chr14   21773574       21880118     NR_003029        SNORD9
8   chr16   78955904       79421840     NM_016373          WWOX
9    chr3    2243457        2389216  NM_001206955         CNTN4
11   chr3  131303622      132429054     NM_001099          ACPP
13   chr3  131303622      132429054  NM_001289112         CPNE4
14   chr3  131303622      132429054  NM_001320210          UBA5
16   chr3  131303622      132429054  NM_001329126       DNAJC13
18   chr3  131303622      132429054     NM_016557         ACKR4
20   chr3  131303622      132429054     NM_153240         NPHP3
24   chr3  131303622      132429054     NR_037804  NPHP3-ACAD11
25   chr3  131303622      132429054     NR_049890       MIR5704
26   chr3  131303622      132429054     NR_132428        ACAD11,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21891630       22384838  NM_001001912         OR4E2
1   chr14   21891630       22384838  NM_001005465        OR10G3
2   chr14   21891630       22384838  NM_001005466        OR10G2
3   chr14   21891630       22384838  NM_001163380         RAB2B
4   chr14   21891630       22384838  NM_001170629          CHD8
5   chr14   21891630       22384838  NM_001303523          TOX4
6   chr14   21891630       22384838  NM_001317107         OR4E1
7   chr14   21891630       22384838     NM_019852        METTL3
10  chr14   21891630       22384838     NR_111966         SALL2
12  chr16   21549939       21695841  NM_001077180        METTL9
13  chr16   21549939       21695841  NM_001161683          OTOA
15  chr16   21549939       21695841     NM_005849         IGSF6
17  chr16   21549939       21695841     NR_110930  LOC101927814
18   chr3    1182215        1306112  NM_001289081         CNTN6
19   chr7   53260311       53757002     NR_038371     LINC01446
20   chr9    5977811        6399268  NM_001001874       TPD52L3
21   chr9    5977811        6399268  NM_001017969      KIAA2026
22   chr9    5977811        6399268  NM_001199641          IL33
23   chr9    5977811        6399268  NM_001243202        RANBP6
27   chr9    5977811        6399268     NR_039811       MIR4665
28   chr9  137529604      139055303     NM_000093        COL5A1
29   chr9  137529604      139055303  NM_001001676          LCN9
30   chr9  137529604      139055303  NM_001012415        SOHLH1
31   chr9  137529604      139055303  NM_001048265      C9orf116
32   chr9  137529604      139055303  NM_001252619          LCN1
33   chr9  137529604      139055303  NM_001256526       C9orf69
34   chr9  137529604      139055303  NM_001272003         KCNT1
35   chr9  137529604      139055303  NM_001282611         OLFM1
37   chr9  137529604      139055303     NM_002003          FCN1
38   chr9  137529604      139055303     NM_002571          PAEP
39   chr9  137529604      139055303     NM_004108          FCN2
42   chr9  137529604      139055303     NM_014811       PPP1R26
43   chr9  137529604      139055303     NM_015447       CAMSAP1
44   chr9  137529604      139055303     NM_016172         UBAC1
45   chr9  137529604      139055303     NM_144653         NACC2
47   chr9  137529604      139055303     NM_173520       C9orf62
48   chr9  137529604      139055303     NM_182974        GLT6D1
49   chr9  137529604      139055303     NR_034016     LINC01502
50   chr9  137529604      139055303     NR_037460      MIR3689A
51   chr9  137529604      139055303     NR_037469      MIR3689B
52   chr9  137529604      139055303     NR_038969   PPP1R26-AS1
53   chr9  137529604      139055303     NR_039691      MIR3689C
54   chr9  137529604      139055303     NR_039693     MIR3689D1
55   chr9  137529604      139055303     NR_039694     MIR3689D2
56   chr9  137529604      139055303     NR_039695      MIR3689E
57   chr9  137529604      139055303     NR_039696      MIR3689F
58   chr9  137529604      139055303     NR_046107     LOC401557
59   chr9  137529604      139055303     NR_051967         MRPS2
60   chr9  137529604      139055303     NR_103451  LOC101448202
61   chr9  137529604      139055303     NR_120603         OBP2A
62   chr9  137529604      139055303     NR_121579  LOC101928525
64   chr9  137529604      139055303     NR_138049    COL5A1-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12831687       12935970  NM_001013631   HNRNPCL1
1    chr1   12831687       12935970  NM_001080830   PRAMEF12
2    chr1   12831687       12935970  NM_001146181   HNRNPCL3
3    chr1   12831687       12935970  NM_001146344   PRAMEF11
4    chr1   12831687       12935970  NM_001294139    PRAMEF1
5    chr1   12831687       12935970  NM_001302551   HNRNPCL4
7    chr1   12831687       12935970     NM_023014    PRAMEF2
8   chr12   62514996       62847019  NM_001252079      USP15
10  chr12   62514996       62847019     NM_178539    FAM19A2
11  chr12   62514996       62847019     NR_106740    MIR6125
12  chr13   63359563       63537144     NR_047029  LINC00448
15  chr14   21813560       22483090  NM_001001912      OR4E2
16  chr14   21813560       22483090  NM_001005465     OR10G3
17  chr14   21813560       22483090  NM_001005466     OR10G2
18  chr14   21813560       22483090  NM_001163380      RAB2B
19  chr14   21813560       22483090  NM_001170629       CHD8
20  chr14   21813560       22483090  NM_001303523       TOX4
21  chr14   21813560       22483090  NM_001317107      OR4E1
22  chr14   21813560       22483090     NM_007192    SUPT16H
23  chr14   21813560       22483090     NM_019852     METTL3
24  chr14   21813560       22483090     NM_020366    RPGRIP1
27  chr14   21813560       22483090     NR_002916     SNORD8
28  chr14   21813560       22483090     NR_003029     SNORD9
29  chr14   21813560       22483090     NR_111966      SALL2
31   chr2   35672411       35777084     NR_039629   MIR548AD
32   chr2   84661208       84844397     NM_001370      DNAH6
33   chr2   84661208       84844397     NM_003849     SUCLG1
34   chr5   63816409       63922949  NM_001029875     RGS7BP
36   chr8  111881859      111995049     NR_125417  LINC01608,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   18443113       18598546  NM_001004060      NOMO2
1  chr16   18443113       18598546     NR_003569    ABCC6P1
2  chr16   18443113       18598546     NR_036140  MIR3179-1
3  chr16   18443113       18598546     NR_036142  MIR3180-2
4  chr16   18443113       18598546     NR_036144  MIR3180-3
5  chr16   18443113       18598546     NR_037442  MIR3670-1
6  chr16   18443113       18598546     NR_107060  MIR6770-2
7   chr2  110140793      110251809  NM_001099289     SH3RF3
8  chr21   22336037       22775618     NM_004540      NCAM2
9   chr3   60334554       60573251  NM_001320899       FHIT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145262180      146605289  NM_001012758        NUDT17
1    chr1  145262180      146605289  NM_001039888      ANKRD34A
2    chr1  145262180      146605289  NM_001097612        GPR89A
3    chr1  145262180      146605289  NM_001101663        NBPF11
4    chr1  145262180      146605289  NM_001184795        PEX11B
5    chr1  145262180      146605289  NM_001201325         PDZK1
6    chr1  145262180      146605289  NM_001277444         NBPF9
7    chr1  145262180      146605289  NM_001278141        NBPF12
8    chr1  145262180      146605289  NM_001278267        NBPF20
9    chr1  145262180      146605289  NM_001280799       ANKRD35
10   chr1  145262180      146605289  NM_001302371        NBPF10
11   chr1  145262180      146605289  NM_001303040        ITGA10
12   chr1  145262180      146605289  NM_001303456        POLR3C
13   chr1  145262180      146605289  NM_001313972         TXNIP
15   chr1  145262180      146605289     NM_005105         RBM8A
16   chr1  145262180      146605289     NM_006099         PIAS3
19   chr1  145262180      146605289     NM_007053         CD160
20   chr1  145262180      146605289     NM_014455        RNF115
21   chr1  145262180      146605289     NM_032305       POLR3GL
22   chr1  145262180      146605289     NM_145277          HFE2
23   chr1  145262180      146605289     NM_153713         LIX1L
24   chr1  145262180      146605289     NM_203458      NOTCH2NL
25   chr1  145262180      146605289     NR_002328        GNRHR2
26   chr1  145262180      146605289     NR_024442     LOC728989
28   chr1  145262180      146605289     NR_103466       NBPF13P
31   chr1  145262180      146605289     NR_104217       NBPF25P
33   chr1  145262180      146605289     NR_106794       MIR6736
35   chr1  145262180      146605289     NR_111936       PDZK1P1
36   chr1  145262180      146605289     NR_121645       RNVU1-8
37   chr1  145262180      146605289     NR_125967  LOC101928979
38   chr1  145262180      146605289     NR_135559  LOC100505824
39  chr10  100675076      100972423  NM_001166244         HPSE2
40  chr10  100675076      100972423     NR_106762       MIR6507
41   chr4   94125014       94650743     NM_001510         GRID2
42   chr6  162639309      162924576     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48304980       48538001  NM_001004702      OR4C3
1   chr11   48304980       48538001  NM_001004725      OR4S1
2   chr11   48304980       48538001  NM_001005512     OR4A47
3   chr11   48304980       48538001  NM_001005513     OR4C45
4   chr14   21763427       21889625  NM_001170629       CHD8
5   chr14   21763427       21889625     NM_007192    SUPT16H
6   chr14   21763427       21889625     NM_020366    RPGRIP1
8   chr14   21763427       21889625     NR_002916     SNORD8
9   chr14   21763427       21889625     NR_003029     SNORD9
10  chr15   85746518       86021807  NM_001310153   GOLGA6L3
11  chr15   85746518       86021807     NM_006738     AKAP13
12  chr15   85746518       86021807     NR_049748  LOC642423
13  chr15   85746518       86021807     NR_106993    MIR7706
14   chr9    9939230       10048962     NM_002839      PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63284757       63430186     NR_047029     LINC00448
3   chr14   21678152       22278355  NM_001001912         OR4E2
4   chr14   21678152       22278355  NM_001005465        OR10G3
5   chr14   21678152       22278355  NM_001005466        OR10G2
6   chr14   21678152       22278355  NM_001163380         RAB2B
7   chr14   21678152       22278355  NM_001170629          CHD8
8   chr14   21678152       22278355  NM_001303523          TOX4
9   chr14   21678152       22278355  NM_001317107         OR4E1
10  chr14   21678152       22278355     NM_007192       SUPT16H
11  chr14   21678152       22278355     NM_019852        METTL3
12  chr14   21678152       22278355     NM_020366       RPGRIP1
14  chr14   21678152       22278355     NM_031314        HNRNPC
16  chr14   21678152       22278355     NR_002916        SNORD8
17  chr14   21678152       22278355     NR_003029        SNORD9
18  chr14   21678152       22278355     NR_111966         SALL2
20  chr14   42139433       42562275  NM_001346175         LRFN5
21  chr22   19884246       20279070     NM_000754          COMT
24  chr22   19884246       20279070  NM_001190326         DGCR8
25  chr22   19884246       20279070  NM_001243537       CCDC188
26  chr22   19884246       20279070  NM_001278639        RANBP1
29  chr22   19884246       20279070  NM_001282512        TXNRD2
30  chr22   19884246       20279070  NM_001283116        TANGO2
33  chr22   19884246       20279070     NM_001670         ARVCF
36  chr22   19884246       20279070     NM_013373        ZDHHC8
37  chr22   19884246       20279070     NM_022727        TRMT2A
38  chr22   19884246       20279070     NM_023004         RTN4R
39  chr22   19884246       20279070     NR_026919     LINC00896
40  chr22   19884246       20279070     NR_029706        MIR185
41  chr22   19884246       20279070     NR_031618       MIR1286
42  chr22   19884246       20279070     NR_031706       MIR1306
43  chr22   19884246       20279070     NR_037412       MIR3618
44  chr22   19884246       20279070     NR_038460     LOC284865
45  chr22   19884246       20279070     NR_039918       MIR4761
46  chr22   19884246       20279070     NR_106874       MIR6816
47   chr9   41505603       42343696  NM_001113541     SPATA31A5
48   chr9   41505603       42343696     NM_015667     SPATA31A7
49   chr9   41505603       42343696     NR_003528       ZNF658B
50   chr9   41505603       42343696     NR_003670        FGF7P3
51   chr9   41505603       42343696     NR_015363         GLIDR
52   chr9   41505603       42343696     NR_026803       FAM74A1
55   chr9   41505603       42343696     NR_126048  LOC102724238
56   chr9   41505603       42343696     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72564705       72666408     NR_026836     TRHDE-AS1
2   chr14   21755286       22344364  NM_001001912         OR4E2
3   chr14   21755286       22344364  NM_001005465        OR10G3
4   chr14   21755286       22344364  NM_001005466        OR10G2
5   chr14   21755286       22344364  NM_001163380         RAB2B
6   chr14   21755286       22344364  NM_001170629          CHD8
7   chr14   21755286       22344364  NM_001303523          TOX4
8   chr14   21755286       22344364  NM_001317107         OR4E1
9   chr14   21755286       22344364     NM_007192       SUPT16H
10  chr14   21755286       22344364     NM_019852        METTL3
11  chr14   21755286       22344364     NM_020366       RPGRIP1
14  chr14   21755286       22344364     NR_002916        SNORD8
15  chr14   21755286       22344364     NR_003029        SNORD9
16  chr14   21755286       22344364     NR_111966         SALL2
18  chr16   68622486       68793497  NM_001317184          CDH1
19  chr16   68622486       68793497  NM_001317195          CDH3
20  chr16   68622486       68793497     NR_106988     MIR7641-2
21   chr2   95964953       96223137  NM_001034914        KCNIP3
22   chr2   95964953       96223137  NM_001164464       TRIM43B
24   chr2   95964953       96223137     NM_016044        FAHD2A
25   chr3  165271171      165526571     NM_000055          BCHE
26   chr4  188346375      188538862     NR_038931     LOC339975
27   chr4  188346375      188538862     NR_110436  LOC100506272
28   chr5   98713528       99079552     NR_110562  CTD-2151A2.1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   77655870       77775581  NM_001304505        HMG20A
1  chr15   77655870       77775581     NM_024776         PEAK1
2  chr20   14882509       15019744     NM_080676       MACROD2
3  chr20   14882509       15019744     NR_037841   MACROD2-AS1
5  chr22   17266402       17408406     NM_175878          XKR3
6  chr22   17266402       17408406     NR_003607       HSFY1P1
7   chr7  125017358      125662660     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr2  233024394      233141065  NM_001257281     DIS3L2
2   chr20   21985804       22148121     NR_038394  LINC01432
3   chr22   19036103       19650596  NM_001035247      UFD1L
4   chr22   19036103       19650596  NM_001166242   C22orf39
5   chr22   19036103       19650596  NM_001178010      CDC45
6   chr22   19036103       19650596  NM_001184781      DGCR2
7   chr22   19036103       19650596  NM_001256534    SLC25A1
8   chr22   19036103       19650596  NM_001318151     MRPL40
10  chr22   19036103       19650596     NM_001835     CLTCL1
11  chr22   19036103       19650596     NM_003277      CLDN5
12  chr22   19036103       19650596     NM_003325       HIRA
14  chr22   19036103       19650596     NM_005315       GSC2
16  chr22   19036103       19650596     NM_022719     DGCR14
17  chr22   19036103       19650596     NM_053006      TSSK2
19  chr22   19036103       19650596     NR_024381  LINC00895
20  chr22   19036103       19650596     NR_103767  LINC01311
21   chr6  131069177      131224879  NM_001135554    EPB41L2
22   chr6  131069177      131224879  NM_001195597      SMLR1
24   chr9   39052686       39247363     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21889244       22084542  NM_001005465    OR10G3
1   chr14   21889244       22084542  NM_001163380     RAB2B
2   chr14   21889244       22084542  NM_001170629      CHD8
3   chr14   21889244       22084542  NM_001303523      TOX4
4   chr14   21889244       22084542     NM_019852    METTL3
7   chr14   21889244       22084542     NR_111966     SALL2
9    chr2  235263729      235520190  NM_001282431     ARL4C
11   chr4   94094131       94205581     NM_001510     GRID2,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0    chr1   79042711       79189629     NM_006417              IFI44
1    chr1   79042711       79189629     NM_006820             IFI44L
3   chr11   21283758       21534746  NM_001288713              NELL1
4   chr22   17081150       17615711  NM_001037814               GAB4
5   chr22   17081150       17615711  NM_001163079              CECR6
6   chr22   17081150       17615711  NM_001289905             IL17RA
8   chr22   17081150       17615711     NM_175878               XKR3
9   chr22   17081150       17615711     NR_001591             TPTEP1
10  chr22   17081150       17615711     NR_003607            HSFY1P1
11  chr22   17081150       17615711     NR_015352              CECR7
12  chr22   17081150       17615711     NR_040115  ANKRD62P1-PARP4P3
13  chr22   17081150       17615711     NR_103793       LOC100996342
14  chr22   17081150       17615711     NR_134584       LOC101929350
15   chr3   60031564       60140631  NM_001320899               FHIT
17   chr7   64099080       64251597  NM_001282360             ZNF107
19   chr7   64099080       64251597     NR_106898            MIR6839
20   chr9  132346224      132560134  NM_001286796              NTMT1
24   chr9  132346224      132560134     NM_004878              PTGES
25   chr9  132346224      132560134     NM_016307              PRRX2
26   chr9  132346224      132560134     NM_177999               ASB6
27   chr9  132346224      132560134     NM_199350            C9orf50
28   chr9  132346224      132560134     NR_132102          PRRX2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28705349       29886256  NM_001130414         APBA2
1   chr15   28705349       29886256  NM_001282468       GOLGA8M
2   chr15   28705349       29886256     NM_015307      FAM189A1
3   chr15   28705349       29886256     NM_138704        NSMCE3
4   chr15   28705349       29886256     NR_026589       WHAMMP2
5   chr15   28705349       29886256     NR_033351       GOLGA8F
6   chr15   28705349       29886256     NR_033353       GOLGA8G
7   chr15   28705349       29886256     NR_036443       HERC2P9
8   chr15   28705349       29886256     NR_036475  LOC100289656
9   chr15   28705349       29886256     NR_037599     PDCD6IPP2
10  chr15   28705349       29886256     NR_039734     MIR4509-3
11  chr15   28705349       29886256     NR_047567     GOLGA6L7P
12   chr2  110213559      110382585  NM_001099289        SH3RF3
13   chr2  110213559      110382585  NM_001321504        SEPT10
15   chr2  110213559      110382585     NM_023016        SOWAHC
16   chr2  129512278      129706955     NR_110278  LOC101927881
17   chr7   56999560       57137204     NR_036246     MIR4283-1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  215787763      216046917  NM_001319294         KCTD3
1    chr1  215787763      216046917     NM_206933         USH2A
2   chr15   28649778       30228777  NM_001130414         APBA2
3   chr15   28649778       30228777  NM_001282468       GOLGA8M
4   chr15   28649778       30228777  NM_001301025          TJP1
7   chr15   28649778       30228777     NM_015307      FAM189A1
8   chr15   28649778       30228777     NM_138704        NSMCE3
9   chr15   28649778       30228777     NR_026589       WHAMMP2
10  chr15   28649778       30228777     NR_033351       GOLGA8F
11  chr15   28649778       30228777     NR_033353       GOLGA8G
12  chr15   28649778       30228777     NR_036443       HERC2P9
13  chr15   28649778       30228777     NR_036475  LOC100289656
14  chr15   28649778       30228777     NR_037599     PDCD6IPP2
15  chr15   28649778       30228777     NR_039734     MIR4509-3
17  chr15   28649778       30228777     NR_047567     GOLGA6L7P
18  chr15   28649778       30228777     NR_135221  LOC100130111
19  chr19   23863840       24453879  NM_001244038        ZNF726
20  chr19   23863840       24453879  NM_001278661        ZNF254
23  chr19   23863840       24453879     NM_138286        ZNF681
24  chr19   23863840       24453879     NM_138330        ZNF675
25  chr19   23863840       24453879     NR_003603      HAVCR1P1
26  chr19   23863840       24453879     NR_003662       RPSAP58
27   chr2   50799011       50915106  NM_001330082         NRXN1
28  chr21   13630168       14928690     NR_026916    ANKRD30BP2
29  chr21   13630168       14928690     NR_036164     MIR3156-3
30  chr21   13630168       14928690     NR_110544  LOC102724188
31   chr3   25986459       26785353  NM_001317808        LRRC3B
36   chr9  137622051      137842608     NM_000093        COL5A1
37   chr9  137622051      137842608     NM_002003          FCN1
38   chr9  137622051      137842608     NM_004108          FCN2
39   chr9  137622051      137842608     NR_037460      MIR3689A
40   chr9  137622051      137842608     NR_037469      MIR3689B
41   chr9  137622051      137842608     NR_039691      MIR3689C
42   chr9  137622051      137842608     NR_039693     MIR3689D1
43   chr9  137622051      137842608     NR_039694     MIR3689D2
44   chr9  137622051      137842608     NR_039695      MIR3689E
45   chr9  137622051      137842608     NR_039696      MIR3689F
46   chr9  137622051      137842608     NR_103451  LOC101448202,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  144730143      144833466  NM_001277444          NBPF9
1    chr1  144730143      144833466  NM_001278267         NBPF20
2    chr1  144730143      144833466     NR_102405          NBPF8
3   chr15   20666411       21061859  NM_001145004       GOLGA6L6
4   chr15   20666411       21061859  NM_001277303         POTEB2
5   chr15   20666411       21061859     NM_207355         POTEB3
6   chr15   20666411       21061859     NR_027411       GOLGA8CP
7   chr15   20666411       21061859     NR_027992         NBEAP1
8   chr15   20666411       21061859     NR_036062      MIR3118-2
9   chr15   20666411       21061859     NR_036432        HERC2P3
11  chr16   14738076       15256486  NM_001270767          NTAN1
12  chr16   14738076       15256486  NM_001277323         NPIPA3
14  chr16   14738076       15256486  NM_001277324         NPIPA2
16  chr16   14738076       15256486  NM_001285445         PDXDC1
21  chr16   14738076       15256486  NM_001301064           RRN3
23  chr16   14738076       15256486     NM_006985         NPIPA1
24  chr16   14738076       15256486     NM_014287          NOMO1
25  chr16   14738076       15256486     NM_016561           BFAR
26  chr16   14738076       15256486     NR_023387        ABCC6P2
27  chr16   14738076       15256486     NR_036140      MIR3179-1
28  chr16   14738076       15256486     NR_036141      MIR3180-1
29  chr16   14738076       15256486     NR_036142      MIR3180-2
30  chr16   14738076       15256486     NR_037466      MIR3180-4
31  chr16   14738076       15256486     NR_103772   LOC100288162
32  chr16   14738076       15256486     NR_106775      MIR6511B1
33  chr16   14738076       15256486     NR_106965      MIR6511B2
34  chr16   14738076       15256486     NR_106970      MIR6511A3
35  chr16   14738076       15256486     NR_107060      MIR6770-2
36  chr16   14738076       15256486     NR_123721  PKD1P6-NPIPP1
38  chr16   14738076       15256486     NR_125434   LOC100505915
39  chr16   14738076       15256486     NR_128713      MIR3670-4
40  chr16   14738076       15256486     NR_133651        PLA2G10
41   chr7  102161578      102277175  NM_001031618         SPDYE2
42   chr7  102161578      102277175  NM_001097615        POLR2J3
43   chr7  102161578      102277175  NM_001277335         RASA4B
44   chr7  102161578      102277175     NM_006989          RASA4
45   chr7  110721226      110862528  NM_001099658          LRRN3
46   chr7  110721226      110862528  NM_001244606         IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143123182      143480936     NR_110761  LOC102723769
1   chr13   31496711       31599214     NM_032849         MEDAG
2   chr13   31496711       31599214     NM_152325         TEX26
3   chr13   31496711       31599214     NR_038287     TEX26-AS1
5   chr14   21700121       21832961     NM_007192       SUPT16H
6   chr14   21700121       21832961     NM_020366       RPGRIP1
7   chr14   21700121       21832961     NM_031314        HNRNPC
8   chr15   28590105       29381747  NM_001130414         APBA2
9   chr15   28590105       29381747  NM_001282468       GOLGA8M
10  chr15   28590105       29381747     NR_026589       WHAMMP2
11  chr15   28590105       29381747     NR_033351       GOLGA8F
13  chr15   28590105       29381747     NR_033353       GOLGA8G
15  chr15   28590105       29381747     NR_036443       HERC2P9
16  chr15   28590105       29381747     NR_036475  LOC100289656
17  chr15   28590105       29381747     NR_037599     PDCD6IPP2
18  chr15   28590105       29381747     NR_039734     MIR4509-3
20  chr15   28590105       29381747     NR_047567     GOLGA6L7P
21  chr20   14784842       15005598     NM_080676       MACROD2
22  chr20   14784842       15005598     NR_037841   MACROD2-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143666932      144312234  NM_001123068       PPIAL4G
1   chr1  143666932      144312234  NM_001278267        NBPF20
2   chr1  143666932      144312234  NM_001287385        FAM72C
3   chr1  143666932      144312234  NM_001345942        FAM72D
7   chr1  143666932      144312234     NR_024511     LINC00623
9   chr1  143666932      144312234     NR_104014     LINC01138
10  chr1  143666932      144312234     NR_106967       MIR6077
11  chr1  143666932      144312234     NR_111930  LOC100132057
12  chr1  143666932      144312234     NR_111953     LINC00869
14  chr8    6942945        7407899  NM_001040705      DEFB107B
15  chr8    6942945        7407899  NM_001081551      DEFB103A
16  chr8    6942945        7407899  NM_001164457       ZNF705G
17  chr8    6942945        7407899  NM_001205266        DEFB4B
18  chr8    6942945        7407899  NM_001256873       USP17L1
19  chr8    6942945        7407899  NM_001256874       USP17L4
20  chr8    6942945        7407899  NM_001282478       PRR23D2
21  chr8    6942945        7407899  NM_001282479       PRR23D1
22  chr8    6942945        7407899     NM_058200       SPAG11B
26  chr8    6942945        7407899     NM_080389      DEFB104A
27  chr8    6942945        7407899     NM_152250      DEFB105A
28  chr8    6942945        7407899     NM_152251      DEFB106A
29  chr8    6942945        7407899     NR_003668    DEFB109P1B
30  chr8    6942945        7407899     NR_027000     LINC00965
33  chr8    6942945        7407899     NR_027423        FAM66B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   97451533       98085687     NM_000110          DPYD
1    chr1   97451533       98085687     NR_046590      DPYD-AS1
2    chr1  143709393      144052893  NM_001123068       PPIAL4G
3    chr1  143709393      144052893  NM_001287385        FAM72C
4    chr1  143709393      144052893  NM_001345942        FAM72D
8    chr1  143709393      144052893     NR_104014     LINC01138
9    chr1  143709393      144052893     NR_111930  LOC100132057
11  chr11  131969192      132091399  NM_001048209           NTM,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18360207       18461114  NM_001282511        NPIPA8
1   chr16   18360207       18461114     NR_103772  LOC100288162
2   chr16   18360207       18461114     NR_106971     MIR6511A4
3    chr6  129243992      129354861  NM_001079823         LAMA2
4    chr7  110552656      110655979  NM_001244606        IMMP2L
6    chr7  110644643      110892821  NM_001099658         LRRN3
7    chr7  110644643      110892821  NM_001244606        IMMP2L
9    chr7  124797551      125017167     NR_110183  LOC101928254
10   chr7  124797551      125017167     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21834622       21936080  NM_001163380         RAB2B
1   chr14   21834622       21936080  NM_001170629          CHD8
2   chr14   21834622       21936080     NM_007192       SUPT16H
5   chr14   21834622       21936080     NR_002916        SNORD8
6   chr14   21834622       21936080     NR_003029        SNORD9
7   chr15   28643587       28782543     NR_033351       GOLGA8F
8   chr15   28643587       28782543     NR_033353       GOLGA8G
9   chr15   28643587       28782543     NR_039734     MIR4509-3
11  chr16   21529388       21733586  NM_001077180        METTL9
12  chr16   21529388       21733586  NM_001161683          OTOA
14  chr16   21529388       21733586     NM_005849         IGSF6
17  chr16   21529388       21733586     NR_002594      SLC7A5P2
18  chr16   21529388       21733586     NR_110930  LOC101927814
19   chr2  133088470      133237205     NM_001508         GPR39
20   chr2  133088470      133237205     NR_135203       FAM201B
21   chr6  145827276      145989593     NM_005670         EPM2A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12763482       12864749  NM_001080830      PRAMEF12
1    chr1   12763482       12864749  NM_001103170       AADACL3
2    chr1   12763482       12864749  NM_001294139       PRAMEF1
4    chr1   12763482       12864749     NM_152290      C1orf158
5   chr13   63319551       63505666     NR_047029     LINC00448
8   chr14   21846309       22185046  NM_001001912         OR4E2
9   chr14   21846309       22185046  NM_001005465        OR10G3
10  chr14   21846309       22185046  NM_001005466        OR10G2
11  chr14   21846309       22185046  NM_001163380         RAB2B
12  chr14   21846309       22185046  NM_001170629          CHD8
13  chr14   21846309       22185046  NM_001303523          TOX4
14  chr14   21846309       22185046  NM_001317107         OR4E1
15  chr14   21846309       22185046     NM_007192       SUPT16H
16  chr14   21846309       22185046     NM_019852        METTL3
19  chr14   21846309       22185046     NR_002916        SNORD8
20  chr14   21846309       22185046     NR_003029        SNORD9
21  chr14   21846309       22185046     NR_111966         SALL2
23  chr15   28779849       29289932  NM_001130414         APBA2
24  chr15   28779849       29289932  NM_001282468       GOLGA8M
25  chr15   28779849       29289932     NR_026589       WHAMMP2
26  chr15   28779849       29289932     NR_036443       HERC2P9
27  chr15   28779849       29289932     NR_036475  LOC100289656
28  chr15   28779849       29289932     NR_037599     PDCD6IPP2
29  chr15   28779849       29289932     NR_047567     GOLGA6L7P
30  chr16   68534072       68661276  NM_001305204         ZFP90
32  chr18   67058582       67166479     NM_152721          DOK6
33  chr18   67058582       67166479     NR_134579  LOC105372179
34   chr2  202165296      202537870  NM_001044385       TMEM237
35   chr2  202165296      202537870  NM_001168216      ALS2CR11
37   chr2  202165296      202537870  NM_001206864        STRADB
38   chr2  202165296      202537870     NM_015049         TRAK2
39   chr2  202165296      202537870     NM_033066          MPP4
41   chr2  202165296      202537870     NR_110620      ALS2CR12
42  chr22   17184560       17871673  NM_001037814          GAB4
43  chr22   17184560       17871673  NM_001163079         CECR6
44  chr22   17184560       17871673  NM_001282227         CECR1
46  chr22   17184560       17871673  NM_001289905        IL17RA
47  chr22   17184560       17871673  NM_001290046         CECR2
48  chr22   17184560       17871673     NM_017829         CECR5
51  chr22   17184560       17871673     NM_175878          XKR3
53  chr22   17184560       17871673     NR_003607       HSFY1P1
54  chr22   17184560       17871673     NR_015352         CECR7
55  chr22   17184560       17871673     NR_024482     CECR5-AS1
56  chr22   17184560       17871673     NR_038398         CECR3
57  chr22   17184560       17871673     NR_103793  LOC100996342
58  chr22   17184560       17871673     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28758021       29033310  NM_001282468       GOLGA8M
1   chr15   28758021       29033310     NR_026589       WHAMMP2
2   chr15   28758021       29033310     NR_033351       GOLGA8F
3   chr15   28758021       29033310     NR_033353       GOLGA8G
4   chr15   28758021       29033310     NR_036443       HERC2P9
5   chr16   15002624       15149444  NM_001270767         NTAN1
6   chr16   15002624       15149444  NM_001285445        PDXDC1
12  chr16   15002624       15149444     NM_006985        NPIPA1
13  chr16   15002624       15149444     NR_036141     MIR3180-1
14  chr16   15002624       15149444     NR_036142     MIR3180-2
15  chr16   15002624       15149444     NR_103772  LOC100288162
16  chr16   15002624       15149444     NR_106970     MIR6511A3
17  chr16   15002624       15149444     NR_107060     MIR6770-2
18  chr16   21723352       21891638  NM_001161683          OTOA
19  chr16   21723352       21891638  NM_001310148        NPIPB4
22  chr16   21723352       21891638     NR_003370        RRN3P1
23   chr7   64028998       64129754  NM_001282360        ZNF107
24   chr7   64028998       64129754     NR_033245     LOC641746
25   chr7   64028998       64129754     NR_077227  LOC100128885
27   chr7   71475467       71605149  NM_001017440         CALN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  132173637      132571153  NM_001012393         OPCML
1   chr11  132173637      132571153  NM_001048209           NTM
6   chr15   28656480       29324455  NM_001130414         APBA2
7   chr15   28656480       29324455  NM_001282468       GOLGA8M
8   chr15   28656480       29324455     NR_026589       WHAMMP2
9   chr15   28656480       29324455     NR_033351       GOLGA8F
10  chr15   28656480       29324455     NR_033353       GOLGA8G
11  chr15   28656480       29324455     NR_036443       HERC2P9
12  chr15   28656480       29324455     NR_036475  LOC100289656
13  chr15   28656480       29324455     NR_037599     PDCD6IPP2
14  chr15   28656480       29324455     NR_039734     MIR4509-3
16  chr15   28656480       29324455     NR_047567     GOLGA6L7P
17   chr6  146421646      146660866  NM_001278064          GRM1
19   chr7  152283787      152582388     NM_005431         XRCC2
20   chr7  152283787      152582388     NM_020445        ACTR3B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12982490       13409063  NM_001010889       PRAMEF6
2    chr1   12982490       13409063  NM_001010890       PRAMEF9
3    chr1   12982490       13409063  NM_001012276       PRAMEF8
4    chr1   12982490       13409063  NM_001013407       PRAMEF5
6    chr1   12982490       13409063  NM_001099850      PRAMEF18
8    chr1   12982490       13409063  NM_001100631      PRAMEF22
10   chr1   12982490       13409063  NM_001136561      HNRNPCL2
11   chr1   12982490       13409063  NM_001300891      PRAMEF27
12   chr1   12982490       13409063  NM_001306072      PRAMEF26
13   chr1   12982490       13409063  NM_001310134      PRAMEF25
14   chr1   12982490       13409063     NR_111945     PRAMEF36P
16  chr14   21755913       22881345  NM_001001912         OR4E2
17  chr14   21755913       22881345  NM_001005465        OR10G3
18  chr14   21755913       22881345  NM_001005466        OR10G2
19  chr14   21755913       22881345  NM_001163380         RAB2B
20  chr14   21755913       22881345  NM_001170629          CHD8
21  chr14   21755913       22881345  NM_001303523          TOX4
22  chr14   21755913       22881345  NM_001317107         OR4E1
23  chr14   21755913       22881345     NM_007192       SUPT16H
24  chr14   21755913       22881345     NM_019852        METTL3
25  chr14   21755913       22881345     NM_020366       RPGRIP1
28  chr14   21755913       22881345     NR_002916        SNORD8
29  chr14   21755913       22881345     NR_003029        SNORD9
30  chr14   21755913       22881345     NR_111966         SALL2
32  chr19   47813079       48072119  NM_001009813         MEIS3
33  chr19   47813079       48072119  NM_001271749         C5AR2
35  chr19   47813079       48072119  NM_001277075        ZNF541
36  chr19   47813079       48072119  NM_001291296          KPTN
39  chr19   47813079       48072119     NM_001736         C5AR1
40  chr19   47813079       48072119     NM_014681         DHX34
..    ...        ...            ...           ...           ...
43  chr19   47813079       48072119     NR_038452      NAPA-AS1
44  chr19   47813079       48072119     NR_038457          NAPA
45  chr19   47817501       48248393  NM_001009813         MEIS3
46  chr19   47817501       48248393  NM_001271749         C5AR2
48  chr19   47817501       48248393  NM_001277075        ZNF541
49  chr19   47817501       48248393  NM_001291296          KPTN
52  chr19   47817501       48248393     NM_001736         C5AR1
53  chr19   47817501       48248393     NM_014601          EHD2
54  chr19   47817501       48248393     NM_014681         DHX34
55  chr19   47817501       48248393     NM_015063        SLC8A2
56  chr19   47817501       48248393     NM_015711       GLTSCR1
58  chr19   47817501       48248393     NR_038452      NAPA-AS1
59  chr19   47817501       48248393     NR_038457          NAPA
60   chr3  155990967      156149002  NM_001308217        KCNAB1
65   chr4     116052         620037     NM_000283         PDE6B
66   chr4     116052         620037  NM_001039127        ZNF718
67   chr4     116052         620037  NM_001137608        ZNF732
68   chr4     116052         620037  NM_001289053          PIGG
71   chr4     116052         620037     NM_003441        ZNF141
72   chr4     116052         620037     NM_133474        ZNF721
73   chr4     116052         620037     NR_002451       ABCA11P
74   chr4     116052         620037     NR_027481       ZNF876P
75   chr4     116052         620037     NR_030297        MIR571
80   chr5  104078871      104622161     NR_000039       RAB9BP1
81   chr7   93209935       93644219  NM_001317739          BET1
82   chr7   93209935       93644219     NM_004126         GNG11
83   chr7   93209935       93644219     NM_006528         TFPI2
84   chr7   93209935       93644219     NM_021955         GNGT1
85   chr7   93209935       93644219     NR_039796       MIR4652
87   chr7   93209935       93644219     NR_134235  LOC105375401

[61 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67629503       67766890  NM_001127384     CTNNA3
2   chr10  117332984      117604463     NM_207303     ATRNL1
3   chr16   16448131       16704326  NM_001282511     NPIPA8
4   chr16   16448131       16704326     NR_106971  MIR6511A4
5   chr16   21737084       22125839  NM_001161683       OTOA
6   chr16   21737084       22125839  NM_001164579   C16orf52
7   chr16   21737084       22125839  NM_001310148     NPIPB4
8   chr16   21737084       22125839     NM_003366     UQCRC2
11  chr16   21737084       22125839     NM_173615      VWA3A
12  chr16   21737084       22125839     NM_173806      PDZD9
13  chr16   21737084       22125839     NR_003370     RRN3P1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21805535       21932525  NM_001163380     RAB2B
1   chr14   21805535       21932525  NM_001170629      CHD8
2   chr14   21805535       21932525     NM_007192   SUPT16H
3   chr14   21805535       21932525     NM_020366   RPGRIP1
6   chr14   21805535       21932525     NR_002916    SNORD8
7   chr14   21805535       21932525     NR_003029    SNORD9
8    chr5  150136599      150242772  NM_001135643     DCTN4
10   chr5  150136599      150242772  NM_001145805      IRGM
12   chr5  150136599      150242772     NM_032947     SMIM3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143677707      143886611  NM_001123068       PPIAL4G
1    chr1  143677707      143886611     NR_104014     LINC01138
2    chr1  143677707      143886611     NR_111930  LOC100132057
3   chr14   21776265       21909141  NM_001170629          CHD8
4   chr14   21776265       21909141     NM_007192       SUPT16H
5   chr14   21776265       21909141     NM_020366       RPGRIP1
7   chr14   21776265       21909141     NR_002916        SNORD8
8   chr14   21776265       21909141     NR_003029        SNORD9
9   chr16   14746542       14872740  NM_001277323        NPIPA3
11  chr16   14746542       14872740  NM_001277324        NPIPA2
13  chr16   14746542       14872740     NM_016561          BFAR
14  chr16   14746542       14872740     NR_133651       PLA2G10
15   chr4   69246210       69350675     NM_014058     TMPRSS11E
16   chr4  121674533      121823608     NM_018699         PRDM5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145272857      145460596  NM_001277444         NBPF9
1    chr1  145272857      145460596  NM_001278267        NBPF20
2    chr1  145272857      145460596  NM_001302371        NBPF10
3    chr1  145272857      145460596  NM_001313972         TXNIP
5    chr1  145272857      145460596     NM_032305       POLR3GL
6    chr1  145272857      145460596     NM_145277          HFE2
7    chr1  145272857      145460596     NM_203458      NOTCH2NL
8    chr1  145272857      145460596     NR_104217       NBPF25P
9    chr1  145272857      145460596     NR_125967  LOC101928979
10   chr2   75917334       76483207  NM_001201334         GCFC2
13  chr22   18978357       19259345  NM_001184781         DGCR2
14  chr22   18978357       19259345  NM_001256534       SLC25A1
15  chr22   18978357       19259345     NM_001835        CLTCL1
16  chr22   18978357       19259345     NM_005315          GSC2
18  chr22   18978357       19259345     NM_022719        DGCR14
19  chr22   18978357       19259345     NM_053006         TSSK2
20  chr22   18978357       19259345     NR_002733         DGCR5
21  chr22   18978357       19259345     NR_024157        DGCR11
22  chr22   18978357       19259345     NR_024159         DGCR9
23  chr22   18978357       19259345     NR_026651        DGCR10
24  chr22   18978357       19259345     NR_103767     LINC01311
26   chr7  110579180      110705207  NM_001244606        IMMP2L
28   chr8   19764098       19873422     NM_000237           LPL
29   chr9   14936192       15041140     NR_003920     LOC389705,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   54812517       55011326     NR_031628       MIR1297
1   chr14   21663137       21820278     NM_007192       SUPT16H
2   chr14   21663137       21820278     NM_020366       RPGRIP1
3   chr14   21663137       21820278     NM_031314        HNRNPC
4   chr14   21663137       21820278     NR_038970     LINC00641
6   chr14   21814804       22497575  NM_001001912         OR4E2
7   chr14   21814804       22497575  NM_001005465        OR10G3
8   chr14   21814804       22497575  NM_001005466        OR10G2
9   chr14   21814804       22497575  NM_001163380         RAB2B
10  chr14   21814804       22497575  NM_001170629          CHD8
11  chr14   21814804       22497575  NM_001303523          TOX4
12  chr14   21814804       22497575  NM_001317107         OR4E1
13  chr14   21814804       22497575     NM_007192       SUPT16H
14  chr14   21814804       22497575     NM_019852        METTL3
15  chr14   21814804       22497575     NM_020366       RPGRIP1
18  chr14   21814804       22497575     NR_002916        SNORD8
19  chr14   21814804       22497575     NR_003029        SNORD9
20  chr14   21814804       22497575     NR_111966         SALL2
22  chr15   28552097       28733596     NM_004667         HERC2
23  chr15   28552097       28733596     NR_033351       GOLGA8F
24  chr15   28552097       28733596     NR_033353       GOLGA8G
25  chr15   28552097       28733596     NR_039734     MIR4509-3
26  chr17      59957         299420  NM_001013672      C17orf97
27  chr17      59957         299420  NM_001190411        RPH3AL
28  chr17      59957         299420     NM_182705         RFLNB
29  chr17      59957         299420     NR_040011  LOC100506388
30  chr17      59957         299420     NR_136407  LOC105371430
31   chr7    4288139        4466704  NM_001079653          SDK1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3    4275556        4457017  NM_001164675     SUMF1
1  chr3    4275556        4457017  NM_001243723    SETMAR,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   60332050       60469074     NM_031457      MS4A8
1   chr11   60332050       60469074     NR_026946  LINC00301
2   chr14   21899191       22303222  NM_001001912      OR4E2
3   chr14   21899191       22303222  NM_001005465     OR10G3
4   chr14   21899191       22303222  NM_001005466     OR10G2
5   chr14   21899191       22303222  NM_001163380      RAB2B
6   chr14   21899191       22303222  NM_001170629       CHD8
7   chr14   21899191       22303222  NM_001303523       TOX4
8   chr14   21899191       22303222  NM_001317107      OR4E1
9   chr14   21899191       22303222     NM_019852     METTL3
12  chr14   21899191       22303222     NR_111966      SALL2
14  chr15   52971198       53696529     NM_004498    ONECUT1
16   chr3   37866733       38076573     NM_005808     CTDSPL
17   chr3   37866733       38076573     NM_006225      PLCD1
18   chr3   37866733       38076573     NM_015873       VILL
20   chr3   37866733       38076573     NR_029499    MIR26A1
21   chr3   37866733       38076573     NR_110531  ITGA9-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   16297666       16519244  NM_001170798       SLC15A5
1   chr12   16297666       16519244  NM_001267598         MGST1
6   chr12  120527973      120770994     NM_000928       PLA2G1B
7   chr12  120527973      120770994  NM_001167606         RAB35
8   chr12  120527973      120770994     NM_002859           PXN
9   chr12  120527973      120770994     NM_006836          GCN1
10  chr12  120527973      120770994     NM_012240         SIRT4
12  chr12  120527973      120770994     NM_053275         RPLP0
13  chr12  120527973      120770994     NM_207311        BICDL1
14  chr12  120527973      120770994     NR_038924       PXN-AS1
15  chr12  120527973      120770994     NR_039719       MIR4498
16  chr13   40338427       40465970  NM_001145079          COG6
17  chr15   29774528       31372536  NM_001039841     ARHGAP11B
18  chr15   29774528       31372536  NM_001146094          FAN1
20  chr15   29774528       31372536  NM_001252020         TRPM1
23  chr15   29774528       31372536  NM_001282472       GOLGA8J
24  chr15   29774528       31372536  NM_001282484       GOLGA8R
25  chr15   29774528       31372536  NM_001282490       GOLGA8H
26  chr15   29774528       31372536  NM_001301025          TJP1
30  chr15   29774528       31372536     NM_015307      FAM189A1
31  chr15   29774528       31372536     NM_017762        MTMR10
32  chr15   29774528       31372536     NM_139320      CHRFAM7A
33  chr15   29774528       31372536     NR_026771  DKFZP434L187
34  chr15   29774528       31372536     NR_026858        ULK4P1
35  chr15   29774528       31372536     NR_026859        ULK4P3
36  chr15   29774528       31372536     NR_029624        MIR211
37  chr15   29774528       31372536     NR_033933       GOLGA8T
38  chr15   29774528       31372536     NR_038253  LOC100288637
40  chr15   29774528       31372536     NR_072991      HERC2P10
41  chr15   29774528       31372536     NR_135221  LOC100130111
42  chr19   57860581       58041498  NM_001023561        ZNF749
43  chr19   57860581       58041498  NM_001098491        ZNF419
44  chr19   57860581       58041498  NM_001144068        ZNF772
45  chr19   57860581       58041498  NM_001172773        ZNF548
46  chr19   57860581       58041498  NM_001199295        ZNF549
47  chr19   57860581       58041498  NM_001304334        ZNF773
49  chr19   57860581       58041498  NM_001330617         ZNF17
51  chr19   57860581       58041498     NM_020633         VN1R1
52  chr19   57860581       58041498     NM_020657        ZNF304
53  chr19   57860581       58041498     NM_173631        ZNF547
54  chr19   57860581       58041498     NR_002166      TRAPPC2B
56  chr20   14635426       14756672     NM_080676       MACROD2
57   chr4   69130061       69255119  NM_001031732        YTHDC1
58   chr6   20953356       21145310     NM_017774        CDKAL1
59   chr7   64060001       64201050  NM_001282360        ZNF107
60   chr7   64060001       64201050     NR_077227  LOC100128885
62   chr7   64060001       64201050     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12818903       13058444  NM_001009611    PRAMEF4
1    chr1   12818903       13058444  NM_001010889    PRAMEF6
2    chr1   12818903       13058444  NM_001010890    PRAMEF9
3    chr1   12818903       13058444  NM_001012276    PRAMEF8
4    chr1   12818903       13058444  NM_001013631   HNRNPCL1
5    chr1   12818903       13058444  NM_001080830   PRAMEF12
6    chr1   12818903       13058444  NM_001099850   PRAMEF18
7    chr1   12818903       13058444  NM_001100631   PRAMEF22
8    chr1   12818903       13058444  NM_001146181   HNRNPCL3
9    chr1   12818903       13058444  NM_001146344   PRAMEF11
10   chr1   12818903       13058444  NM_001294139    PRAMEF1
11   chr1   12818903       13058444  NM_001302551   HNRNPCL4
12   chr1   12818903       13058444  NM_001306072   PRAMEF26
13   chr1   12818903       13058444  NM_001310134   PRAMEF25
15   chr1   12818903       13058444     NM_023014    PRAMEF2
16   chr1   12818903       13058444     NM_152290   C1orf158
17   chr1  108050758      108175144  NM_001079874       VAV3
19  chr13   63171214       63336577     NR_047029  LINC00448
20  chr18    8123785        8258312     NM_002845      PTPRM
21   chr4   30735426       30938717  NM_001173523      PCDH7
22   chr9   39122864       39245650     NM_033655    CNTNAP3
23   chr9   67093788       67271930     NR_002817     AQP7P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    1055423        1156499  NM_001304359        MUC5AC
1   chr11    1055423        1156499  NM_001323425  LOC101927503
2   chr11    1055423        1156499     NM_002457          MUC2
3   chr13   63092588       63891482     NR_047029     LINC00448
6   chr13   63092588       63891482     NR_126409     LINC00376
7   chr15   98222063       98935368     NM_183376        ARRDC4
8   chr15   98222063       98935368     NR_024172     LINC00923
9   chr15   98222063       98935368     NR_120325     LINC01582
10  chr20   14834456       15021341     NM_080676       MACROD2
11  chr20   14834456       15021341     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   12787660       13008217  NM_001009611   PRAMEF4
1    chr1   12787660       13008217  NM_001010889   PRAMEF6
2    chr1   12787660       13008217  NM_001010890   PRAMEF9
3    chr1   12787660       13008217  NM_001012276   PRAMEF8
4    chr1   12787660       13008217  NM_001013631  HNRNPCL1
5    chr1   12787660       13008217  NM_001080830  PRAMEF12
6    chr1   12787660       13008217  NM_001103170   AADACL3
7    chr1   12787660       13008217  NM_001146181  HNRNPCL3
8    chr1   12787660       13008217  NM_001146344  PRAMEF11
9    chr1   12787660       13008217  NM_001294139   PRAMEF1
10   chr1   12787660       13008217  NM_001302551  HNRNPCL4
12   chr1   12787660       13008217     NM_023014   PRAMEF2
13   chr1   12787660       13008217     NM_152290  C1orf158
14  chr14   21884197       22265298  NM_001001912     OR4E2
15  chr14   21884197       22265298  NM_001005465    OR10G3
16  chr14   21884197       22265298  NM_001005466    OR10G2
17  chr14   21884197       22265298  NM_001163380     RAB2B
18  chr14   21884197       22265298  NM_001170629      CHD8
19  chr14   21884197       22265298  NM_001303523      TOX4
20  chr14   21884197       22265298  NM_001317107     OR4E1
21  chr14   21884197       22265298     NM_019852    METTL3
24  chr14   21884197       22265298     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21801466       21997733  NM_001163380     RAB2B
1   chr14   21801466       21997733  NM_001170629      CHD8
2   chr14   21801466       21997733  NM_001303523      TOX4
3   chr14   21801466       21997733     NM_007192   SUPT16H
4   chr14   21801466       21997733     NM_019852    METTL3
5   chr14   21801466       21997733     NM_020366   RPGRIP1
8   chr14   21801466       21997733     NR_002916    SNORD8
9   chr14   21801466       21997733     NR_003029    SNORD9
10  chr14   21801466       21997733     NR_111966     SALL2
12   chr9   39101665       39204871     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2   97163324       97478647  NM_001115016        KANSL3
1    chr2   97163324       97478647  NM_001285485        NEURL3
2    chr2   97163324       97478647  NM_001293083        FER1L5
3    chr2   97163324       97478647  NM_001319085        ARID5A
5    chr2   97163324       97478647  NM_001322354        LMAN2L
6    chr2   97163324       97478647     NM_020184         CNNM4
8    chr2   97163324       97478647     NR_036074       MIR3127
11   chr2   97163324       97478647     NR_135564  LOC105373496
12  chr22   17234044       17370039     NM_175878          XKR3
13  chr22   17234044       17370039     NR_003607       HSFY1P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4191328        4366052     NR_047550  LOC100506082
1   chr14   21817335       22155452  NM_001001912         OR4E2
2   chr14   21817335       22155452  NM_001005465        OR10G3
3   chr14   21817335       22155452  NM_001005466        OR10G2
4   chr14   21817335       22155452  NM_001163380         RAB2B
5   chr14   21817335       22155452  NM_001170629          CHD8
6   chr14   21817335       22155452  NM_001303523          TOX4
7   chr14   21817335       22155452  NM_001317107         OR4E1
8   chr14   21817335       22155452     NM_007192       SUPT16H
9   chr14   21817335       22155452     NM_019852        METTL3
10  chr14   21817335       22155452     NM_020366       RPGRIP1
13  chr14   21817335       22155452     NR_002916        SNORD8
14  chr14   21817335       22155452     NR_003029        SNORD9
15  chr14   21817335       22155452     NR_111966         SALL2
17   chr4  169270651      169387683  NM_001012967        DDX60L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48310036       48438353  NM_001004702     OR4C3
1  chr11   48310036       48438353  NM_001004725     OR4S1
2  chr11   48310036       48438353  NM_001005513    OR4C45
3  chr14   21853503       21964873  NM_001163380     RAB2B
4  chr14   21853503       21964873  NM_001170629      CHD8
5  chr14   21853503       21964873  NM_001303523      TOX4
8  chr14   21853503       21964873     NR_002916    SNORD8
9  chr14   21853503       21964873     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   14760796       14874898     NM_080676       MACROD2
1   chr20   14760796       14874898     NR_037841   MACROD2-AS1
2   chr22   17221710       17605106  NM_001037814          GAB4
3   chr22   17221710       17605106  NM_001163079         CECR6
4   chr22   17221710       17605106  NM_001289905        IL17RA
6   chr22   17221710       17605106     NM_175878          XKR3
7   chr22   17221710       17605106     NR_003607       HSFY1P1
8   chr22   17221710       17605106     NR_015352         CECR7
9   chr22   17221710       17605106     NR_103793  LOC100996342
10  chr22   17221710       17605106     NR_134584  LOC101929350
11   chr4   69129847       69665839  NM_001031732        YTHDC1
12   chr4   69129847       69665839     NM_001076       UGT2B15
13   chr4   69129847       69665839     NM_001077       UGT2B17
14   chr4   69129847       69665839     NM_014058     TMPRSS11E
15   chr6   62053680       62290597  NM_001190706      MTRNR2L9
16   chr9     247875         408245  NM_001190458         DOCK8,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  131954009      132173233  NM_001048209        NTM
3   chr11  131954009      132173233     NR_046820     NTM-IT
4   chr16   18467727       18604236  NM_001004060      NOMO2
5   chr16   18467727       18604236     NR_003569    ABCC6P1
6   chr16   18467727       18604236     NR_036140  MIR3179-1
7   chr16   18467727       18604236     NR_036142  MIR3180-2
8   chr16   18467727       18604236     NR_036144  MIR3180-3
9   chr16   18467727       18604236     NR_037442  MIR3670-1
10  chr16   18467727       18604236     NR_107060  MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27223768       27325560  NM_001080406      C12orf71
1   chr13   22339472       22650785     NR_047040     LINC00424
2   chr16   16265877       16590427  NM_001004067         NOMO3
3   chr16   16265877       16590427  NM_001079528         ABCC6
5   chr16   16265877       16590427  NM_001282511        NPIPA8
6   chr16   16265877       16590427     NR_036140     MIR3179-1
7   chr16   16265877       16590427     NR_036141     MIR3180-1
8   chr16   16265877       16590427     NR_036142     MIR3180-2
9   chr16   16265877       16590427     NR_036447        PKD1P1
10  chr16   16265877       16590427     NR_103772  LOC100288162
11  chr16   16265877       16590427     NR_106766     MIR6511A1
12  chr16   16265877       16590427     NR_106971     MIR6511A4
13  chr16   16265877       16590427     NR_107060     MIR6770-2
14  chr16   16265877       16590427     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21763001       21904437  NM_001170629          CHD8
1   chr14   21763001       21904437     NM_007192       SUPT16H
2   chr14   21763001       21904437     NM_020366       RPGRIP1
4   chr14   21763001       21904437     NR_002916        SNORD8
5   chr14   21763001       21904437     NR_003029        SNORD9
6    chr2   97165574       97297999  NM_001115016        KANSL3
7    chr2   97165574       97297999  NM_001285485        NEURL3
8    chr2   97165574       97297999  NM_001319085        ARID5A
12   chr2   97165574       97297999     NR_135564  LOC105373496
13   chr7   71439926       71601496  NM_001017440         CALN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   19623520       19867907     NM_006001        TUBA3C
1   chr13   19623520       19867907     NR_027248     ANKRD26P3
2   chr13   19623520       19867907     NR_126054  LOC101928697
3   chr14   21792853       21974294  NM_001163380         RAB2B
4   chr14   21792853       21974294  NM_001170629          CHD8
5   chr14   21792853       21974294  NM_001303523          TOX4
6   chr14   21792853       21974294     NM_007192       SUPT16H
7   chr14   21792853       21974294     NM_019852        METTL3
8   chr14   21792853       21974294     NM_020366       RPGRIP1
11  chr14   21792853       21974294     NR_002916        SNORD8
12  chr14   21792853       21974294     NR_003029        SNORD9
13  chr14   21888347       21989616  NM_001163380         RAB2B
14  chr14   21888347       21989616  NM_001170629          CHD8
15  chr14   21888347       21989616  NM_001303523          TOX4
16  chr14   21888347       21989616     NM_019852        METTL3
19  chr14   21888347       21989616     NR_111966         SALL2
21  chr15   30242054       30443471  NM_001282472       GOLGA8J
22  chr15   30242054       30443471  NM_001301025          TJP1
23  chr15   30242054       30443471     NR_026859        ULK4P3
24  chr15   30242054       30443471     NR_033933       GOLGA8T
25   chr3  196811228      197084082  NM_001204386          DLG1
28   chr3  196811228      197084082     NR_038289      DLG1-AS1
29   chr3  196811228      197084082     NR_039960       MIR4797
30   chr6  162776037      162999606     NM_013988         PARK2
31   chr9   41869070       41981776     NR_003670        FGF7P3
32   chr9   41869070       41981776     NR_015363         GLIDR,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21867278       21990207  NM_001163380     RAB2B
1  chr14   21867278       21990207  NM_001170629      CHD8
2  chr14   21867278       21990207  NM_001303523      TOX4
3  chr14   21867278       21990207     NM_019852    METTL3
6  chr14   21867278       21990207     NR_111966     SALL2
8   chr9   39052019       39229729     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr14   21621031       21750123  NM_001004731             OR5AU1
1   chr14   21621031       21750123     NM_031314             HNRNPC
2   chr14   21621031       21750123     NR_038970          LINC00641
4   chr15   28702098       29289850  NM_001130414              APBA2
5   chr15   28702098       29289850  NM_001282468            GOLGA8M
6   chr15   28702098       29289850     NR_026589            WHAMMP2
7   chr15   28702098       29289850     NR_033351            GOLGA8F
8   chr15   28702098       29289850     NR_033353            GOLGA8G
9   chr15   28702098       29289850     NR_036443            HERC2P9
10  chr15   28702098       29289850     NR_036475       LOC100289656
11  chr15   28702098       29289850     NR_037599          PDCD6IPP2
12  chr15   28702098       29289850     NR_039734          MIR4509-3
13  chr15   28702098       29289850     NR_047567          GOLGA6L7P
14  chr22   17129947       17407681     NM_175878               XKR3
15  chr22   17129947       17407681     NR_003607            HSFY1P1
16  chr22   17129947       17407681     NR_040115  ANKRD62P1-PARP4P3
17  chr22   17129947       17407681     NR_134584       LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143131574      143910622  NM_001123068       PPIAL4G
1    chr1  143131574      143910622  NM_001287385        FAM72C
2    chr1  143131574      143910622  NM_001345942        FAM72D
6    chr1  143131574      143910622     NR_104014     LINC01138
7    chr1  143131574      143910622     NR_106967       MIR6077
8    chr1  143131574      143910622     NR_110761  LOC102723769
9    chr1  143131574      143910622     NR_111930  LOC100132057
11  chr17     390772         510812  NM_001128159         VPS53,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  120499303      120696838  NM_001167606         RAB35
1   chr12  120499303      120696838     NM_002859           PXN
2   chr12  120499303      120696838     NM_006836          GCN1
4   chr12  120499303      120696838     NM_053275         RPLP0
5   chr12  120499303      120696838     NM_207311        BICDL1
6   chr12  120499303      120696838     NR_038924       PXN-AS1
7   chr12  120499303      120696838     NR_039719       MIR4498
8   chr15   28644579       29142139  NM_001282468       GOLGA8M
9   chr15   28644579       29142139     NR_026589       WHAMMP2
10  chr15   28644579       29142139     NR_033351       GOLGA8F
11  chr15   28644579       29142139     NR_033353       GOLGA8G
12  chr15   28644579       29142139     NR_036443       HERC2P9
13  chr15   28644579       29142139     NR_036475  LOC100289656
14  chr15   28644579       29142139     NR_037599     PDCD6IPP2
15  chr15   28644579       29142139     NR_039734     MIR4509-3
17  chr15   28644579       29142139     NR_047567     GOLGA6L7P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27628130       27844126  NM_001034842        PTCHD3
1   chr10   27628130       27844126  NM_001256411         RAB18
2   chr10   67897127       68188197  NM_001127384        CTNNA3
4   chr11   48338767       48463596  NM_001004702         OR4C3
5   chr11   48338767       48463596  NM_001005513        OR4C45
6   chr22   17171059       17446938  NM_001037814          GAB4
7   chr22   17171059       17446938     NM_175878          XKR3
8   chr22   17171059       17446938     NR_003607       HSFY1P1
9   chr22   17171059       17446938     NR_134584  LOC101929350
10   chr7  117568530      117899798     NM_016200          LSM8
11   chr7  117568530      117899798     NM_019644        ANKRD7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21752235       21976127  NM_001163380         RAB2B
1   chr14   21752235       21976127  NM_001170629          CHD8
2   chr14   21752235       21976127  NM_001303523          TOX4
3   chr14   21752235       21976127     NM_007192       SUPT16H
4   chr14   21752235       21976127     NM_019852        METTL3
5   chr14   21752235       21976127     NM_020366       RPGRIP1
8   chr14   21752235       21976127     NR_002916        SNORD8
9   chr14   21752235       21976127     NR_003029        SNORD9
10  chr14   26605403       27271603     NM_002515         NOVA1
12  chr14   26605403       27271603     NR_110033  LOC101927062
13  chr19   21893494       21999625  NM_001256650         ZNF43
15  chr19   21893494       21999625     NM_173531        ZNF100
16  chr19   21893494       21999625     NR_024523     LOC641367
17   chr4  169215591      169641471  NM_001012967        DDX60L
18   chr4  169215591      169641471  NM_001166108         PALLD
21   chr4  169215591      169641471     NM_017631         DDX60
22   chr6  155425537      155673200  NM_001001346        CLDN20
23   chr6  155425537      155673200  NM_001010927         TIAM2
25   chr6  155425537      155673200     NM_016020         TFB1M
26   chr9   39110516       39213164     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   29754914       29967865     NM_015307      FAM189A1
1   chr15   29754914       29967865     NR_135221  LOC100130111
2   chr16   21485815       21825251  NM_001077180        METTL9
3   chr16   21485815       21825251  NM_001161683          OTOA
5   chr16   21485815       21825251     NM_005849         IGSF6
8   chr16   21485815       21825251     NR_002594      SLC7A5P2
9   chr16   21485815       21825251     NR_003370        RRN3P1
10  chr16   21485815       21825251     NR_027155        SMG1P3
11  chr16   21485815       21825251     NR_049833     MIR3680-2
12  chr16   21485815       21825251     NR_110930  LOC101927814
13  chr16   29541108       29838455  NM_001030288           SPN
14  chr16   29541108       29838455  NM_001256269         KIF22
16  chr16   29541108       29838455  NM_001256443         PRRT2
17  chr16   29541108       29838455  NM_001276275           MAZ
18  chr16   29541108       29838455  NM_001318249          QPRT
21  chr16   29541108       29838455     NM_005115           MVP
22  chr16   29541108       29838455     NM_024516         PAGR1
23  chr16   29541108       29838455     NM_152338          ZG16
24  chr16   29541108       29838455     NM_175900      C16orf54
25  chr16   29541108       29838455     NR_049833     MIR3680-2
26  chr16   29541108       29838455     NR_135305        SMG1P2
28   chr9   41923790       42090696     NR_003670        FGF7P3
29   chr9   41923790       42090696     NR_015363         GLIDR
32   chr9   41923790       42090696     NR_126048  LOC102724238
33   chr9   41923790       42090696     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21868778       22459933  NM_001001912     OR4E2
1   chr14   21868778       22459933  NM_001005465    OR10G3
2   chr14   21868778       22459933  NM_001005466    OR10G2
3   chr14   21868778       22459933  NM_001163380     RAB2B
4   chr14   21868778       22459933  NM_001170629      CHD8
5   chr14   21868778       22459933  NM_001303523      TOX4
6   chr14   21868778       22459933  NM_001317107     OR4E1
7   chr14   21868778       22459933     NM_019852    METTL3
10  chr14   21868778       22459933     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67966069       68105115  NM_001127384    CTNNA3
2   chr14   21818329       22036061  NM_001163380     RAB2B
3   chr14   21818329       22036061  NM_001170629      CHD8
4   chr14   21818329       22036061  NM_001303523      TOX4
5   chr14   21818329       22036061     NM_007192   SUPT16H
6   chr14   21818329       22036061     NM_019852    METTL3
7   chr14   21818329       22036061     NM_020366   RPGRIP1
10  chr14   21818329       22036061     NR_002916    SNORD8
11  chr14   21818329       22036061     NR_003029    SNORD9
12  chr14   21818329       22036061     NR_111966     SALL2
14   chr2  153070321      153409757     NM_052905     FMNL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   19633808       19879694  NM_001142308        MALRD1
1   chr11   31160159       31358166     NM_181807         DCDC1
2   chr14   21753447       21981553  NM_001163380         RAB2B
3   chr14   21753447       21981553  NM_001170629          CHD8
4   chr14   21753447       21981553  NM_001303523          TOX4
5   chr14   21753447       21981553     NM_007192       SUPT16H
6   chr14   21753447       21981553     NM_019852        METTL3
7   chr14   21753447       21981553     NM_020366       RPGRIP1
10  chr14   21753447       21981553     NR_002916        SNORD8
11  chr14   21753447       21981553     NR_003029        SNORD9
12   chr4   69004489       70187796  NM_001031732        YTHDC1
13   chr4   69004489       70187796     NM_001073       UGT2B11
14   chr4   69004489       70187796     NM_001075       UGT2B10
16   chr4   69004489       70187796     NM_001076       UGT2B15
17   chr4   69004489       70187796     NM_001077       UGT2B17
18   chr4   69004489       70187796  NM_001207004       UGT2B28
19   chr4   69004489       70187796  NM_001330719        UGT2B7
20   chr4   69004489       70187796     NM_014058     TMPRSS11E
21   chr4   69004489       70187796     NM_024743        UGT2A3
22   chr4   69004489       70187796     NM_182502     TMPRSS11B
23   chr4   69004489       70187796     NR_015446        FTLP10
24   chr4   69004489       70187796     NR_104048   TMPRSS11BNL
25   chr4   69004489       70187796     NR_136191  LOC105377267
26   chr5   26944731       27071332     NM_016279          CDH9
27   chr7   75740104       75988282  NM_001110199         SRRM3
28   chr7   75740104       75988282     NM_001540         HSPB1
29   chr7   75740104       75988282     NM_012479         YWHAG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17220383       17678690  NM_001037814          GAB4
1   chr22   17220383       17678690  NM_001163079         CECR6
2   chr22   17220383       17678690  NM_001282227         CECR1
4   chr22   17220383       17678690  NM_001289905        IL17RA
5   chr22   17220383       17678690     NM_017829         CECR5
8   chr22   17220383       17678690     NM_175878          XKR3
10  chr22   17220383       17678690     NR_003607       HSFY1P1
11  chr22   17220383       17678690     NR_015352         CECR7
12  chr22   17220383       17678690     NR_024482     CECR5-AS1
13  chr22   17220383       17678690     NR_103793  LOC100996342
14  chr22   17220383       17678690     NR_134584  LOC101929350
15   chr7   80165550       80340547     NM_000072          CD36,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4190446        4352247     NR_047550  LOC100506082
1   chr22   17195639       17398930     NM_175878          XKR3
2   chr22   17195639       17398930     NR_003607       HSFY1P1
3   chr22   17195639       17398930     NR_134584  LOC101929350
4    chr7    2741468        2889185  NM_001282440         GNA12
6    chr7    2741468        2889185  NM_001284355          AMZ1
10   chr7  110621592      110978886  NM_001099658         LRRN3
11   chr7  110621592      110978886  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28724795       29398639  NM_001130414         APBA2
1   chr15   28724795       29398639  NM_001282468       GOLGA8M
2   chr15   28724795       29398639     NR_026589       WHAMMP2
3   chr15   28724795       29398639     NR_033351       GOLGA8F
4   chr15   28724795       29398639     NR_033353       GOLGA8G
5   chr15   28724795       29398639     NR_036443       HERC2P9
6   chr15   28724795       29398639     NR_036475  LOC100289656
7   chr15   28724795       29398639     NR_037599     PDCD6IPP2
8   chr15   28724795       29398639     NR_039734     MIR4509-3
9   chr15   28724795       29398639     NR_047567     GOLGA6L7P
10   chr3  160058520      160166964  NM_001190241         IFT80
12   chr3  160058520      160166964  NM_001288753          SMC4
14   chr3  160058520      160166964     NM_173084        TRIM59
15   chr3  160058520      160166964     NR_029525       MIR16-2
16   chr3  160058520      160166964     NR_029663        MIR15B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17256055       17753911  NM_001037814          GAB4
1   chr22   17256055       17753911  NM_001163079         CECR6
2   chr22   17256055       17753911  NM_001282227         CECR1
4   chr22   17256055       17753911  NM_001289905        IL17RA
5   chr22   17256055       17753911     NM_017829         CECR5
8   chr22   17256055       17753911     NM_175878          XKR3
10  chr22   17256055       17753911     NR_003607       HSFY1P1
11  chr22   17256055       17753911     NR_015352         CECR7
12  chr22   17256055       17753911     NR_024482     CECR5-AS1
13  chr22   17256055       17753911     NR_038398         CECR3
14  chr22   17256055       17753911     NR_103793  LOC100996342
15   chr6  162793770      162907294     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   84092502       84291976  NM_001142699          DLG2
2   chr12  130288563      130397798     NM_133448      TMEM132D
3   chr14   21720483       22082636  NM_001005465        OR10G3
4   chr14   21720483       22082636  NM_001163380         RAB2B
5   chr14   21720483       22082636  NM_001170629          CHD8
6   chr14   21720483       22082636  NM_001303523          TOX4
7   chr14   21720483       22082636     NM_007192       SUPT16H
8   chr14   21720483       22082636     NM_019852        METTL3
9   chr14   21720483       22082636     NM_020366       RPGRIP1
11  chr14   21720483       22082636     NM_031314        HNRNPC
13  chr14   21720483       22082636     NR_002916        SNORD8
14  chr14   21720483       22082636     NR_003029        SNORD9
15  chr14   21720483       22082636     NR_111966         SALL2
17  chr22   17194883       17479305  NM_001037814          GAB4
18  chr22   17194883       17479305     NM_175878          XKR3
19  chr22   17194883       17479305     NR_003607       HSFY1P1
20  chr22   17194883       17479305     NR_134584  LOC101929350
21   chr4   98351519       98484769     NM_174952         STPG2
22   chr4   98351519       98484769     NR_102713     STPG2-AS1
23   chr4  121624816      121821791     NM_018699         PRDM5
24   chr6    4287375        4718764     NR_026590          CDYL
25   chr6    4287375        4718764     NR_106988     MIR7641-2
26   chr6    4287375        4718764     NR_122107      KU-MEL-3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   55776350       55915215  NM_001142770     PCDH15
3   chr13   54441812       54637110     NR_047488  LINC00558
4   chr14   21759486       22187911  NM_001001912      OR4E2
5   chr14   21759486       22187911  NM_001005465     OR10G3
6   chr14   21759486       22187911  NM_001005466     OR10G2
7   chr14   21759486       22187911  NM_001163380      RAB2B
8   chr14   21759486       22187911  NM_001170629       CHD8
9   chr14   21759486       22187911  NM_001303523       TOX4
10  chr14   21759486       22187911  NM_001317107      OR4E1
11  chr14   21759486       22187911     NM_007192    SUPT16H
12  chr14   21759486       22187911     NM_019852     METTL3
13  chr14   21759486       22187911     NM_020366    RPGRIP1
16  chr14   21759486       22187911     NR_002916     SNORD8
17  chr14   21759486       22187911     NR_003029     SNORD9
18  chr14   21759486       22187911     NR_111966      SALL2
20  chr15   28260492       28520023     NM_000275       OCA2
22  chr15   28260492       28520023     NM_004667      HERC2
23   chr2  110214488      110326004  NM_001099289     SH3RF3
24   chr2  110214488      110326004  NM_001321504     SEPT10,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   47831831       48094691  NM_001113498         MDGA2
1   chr22   17207153       17319437     NM_175878          XKR3
2   chr22   17207153       17319437     NR_003607       HSFY1P1
3   chr22   17207153       17319437     NR_134584  LOC101929350
4   chr22   19931646       20067591     NM_000754          COMT
7   chr22   19931646       20067591  NM_001283116        TANGO2
10  chr22   19931646       20067591     NM_001670         ARVCF
12  chr22   19931646       20067591     NR_029706        MIR185
13  chr22   19931646       20067591     NR_039918       MIR4761
14   chr3     372465        1765774  NM_001253387          CHL1
16   chr3     372465        1765774  NM_001289081         CNTN6
17   chr3     372465        1765774     NR_110118     LINC01266
18   chr3     372465        1765774     NR_110739      CHL1-AS1
19   chr3  193107147      193280725     NM_032279       ATP13A4
20   chr3  193107147      193280725     NR_046726   ATP13A4-AS1
22   chr5  127838744      127957116     NM_001999          FBN2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21856797       22092746  NM_001005465    OR10G3
1   chr14   21856797       22092746  NM_001163380     RAB2B
2   chr14   21856797       22092746  NM_001170629      CHD8
3   chr14   21856797       22092746  NM_001303523      TOX4
4   chr14   21856797       22092746     NM_019852    METTL3
7   chr14   21856797       22092746     NR_002916    SNORD8
8   chr14   21856797       22092746     NR_003029    SNORD9
9   chr14   21856797       22092746     NR_111966     SALL2
11  chr15   54571776       54736664  NM_001080534    UNC13C
13   chr3  165249055      165768324     NM_000055      BCHE,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0     chr1  108433181      109954610  NM_001005290         PSRC1
1     chr1  108433181      109954610  NM_001010883       FAM102B
2     chr1  108433181      109954610  NM_001102592        HENMT1
3     chr1  108433181      109954610  NM_001122961      C1orf194
4     chr1  108433181      109954610  NM_001142550         WDR47
5     chr1  108433181      109954610  NM_001143988         NBPF6
6     chr1  108433181      109954610  NM_001143989         NBPF4
7     chr1  108433181      109954610  NM_001144937         FNDC7
8     chr1  108433181      109954610  NM_001199772         PSMA5
11    chr1  108433181      109954610  NM_001205228         SORT1
12    chr1  108433181      109954610  NM_001265613        MYBPHL
13    chr1  108433181      109954610  NM_001267048      KIAA1324
14    chr1  108433181      109954610  NM_001278202         CLCC1
16    chr1  108433181      109954610  NM_001321039         GPSM2
17    chr1  108433181      109954610  NM_001322248      TMEM167B
18    chr1  108433181      109954610     NM_001408        CELSR2
20    chr1  108433181      109954610     NM_005645         TAF13
21    chr1  108433181      109954610     NM_006113          VAV3
22    chr1  108433181      109954610     NM_006513          SARS
23    chr1  108433181      109954610     NM_007269        STXBP3
25    chr1  108433181      109954610     NM_013386      SLC25A24
27    chr1  108433181      109954610     NM_018061       PRPF38B
30    chr1  108433181      109954610     NM_152763        AKNAD1
32    chr1  108433181      109954610     NR_003023       SCARNA2
34    chr1  108433181      109954610     NR_034168       SPATA42
36    chr1  108433181      109954610     NR_046653      VAV3-AS1
39    chr1  108433181      109954610     NR_107006       MIR7852
40    chr1  145007376      146678022  NM_001012758        NUDT17
41    chr1  145007376      146678022  NM_001039888      ANKRD34A
42    chr1  145007376      146678022  NM_001097612        GPR89A
..     ...        ...            ...           ...           ...
78    chr1  145007376      146678022     NR_104217       NBPF25P
80    chr1  145007376      146678022     NR_106794       MIR6736
82    chr1  145007376      146678022     NR_111936       PDZK1P1
83    chr1  145007376      146678022     NR_121645       RNVU1-8
84    chr1  145007376      146678022     NR_125967  LOC101928979
85    chr1  145007376      146678022     NR_135559  LOC100505824
86   chr13   22327211       23915816     NM_000231          SGCG
87   chr13   22327211       23915816  NM_001278055          SACS
89   chr13   22327211       23915816     NR_033774       BASP1P1
90   chr13   22327211       23915816     NR_047040     LINC00424
91   chr13   22327211       23915816     NR_103810     LINC00540
92   chr13   22327211       23915816     NR_138043     LINC00621
93   chr14   21780172       21932689  NM_001163380         RAB2B
94   chr14   21780172       21932689  NM_001170629          CHD8
95   chr14   21780172       21932689     NM_007192       SUPT16H
96   chr14   21780172       21932689     NM_020366       RPGRIP1
99   chr14   21780172       21932689     NR_002916        SNORD8
100  chr14   21780172       21932689     NR_003029        SNORD9
101  chr15   82887356       83023989  NM_001164465     GOLGA6L10
102  chr15   82887356       83023989  NM_001291420      GOLGA6L9
104  chr15   82887356       83023989     NR_004847      UBE2Q2P2
105  chr15   82887356       83023989     NR_026811     GOLGA2P10
106  chr15   82887356       83023989     NR_045529     ADAMTS7P1
107  chr15   82887356       83023989     NR_102747     LOC727751
108  chr15   82887356       83023989     NR_111962    GOLGA6L17P
109  chr15   82887356       83023989     NR_120378  LOC102724034
110   chr3    4120285        4745032  NM_001164675         SUMF1
111   chr3    4120285        4745032  NM_001168272         ITPR1
112   chr3    4120285        4745032  NM_001243723        SETMAR
114   chr3    4120285        4745032     NR_108075     ITPR1-AS1

[87 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  243530815      243645769     NM_006642       SDCCAG8
1   chr10    6735072        6865831     NR_038291     LINC00707
2   chr10    6735072        6865831     NR_108074     LINC00706
3   chr10    6735072        6865831     NR_138480         LINP1
4   chr12   89374859       89631320     NR_038385     LOC728084
5   chr14   21821411       21925914  NM_001170629          CHD8
6   chr14   21821411       21925914     NM_007192       SUPT16H
8   chr14   21821411       21925914     NR_002916        SNORD8
9   chr14   21821411       21925914     NR_003029        SNORD9
10   chr2   77953695       78136884     NR_110288  LOC101927967
11  chr21   23432288       23686386     NR_038400     LINC00308
12  chr21   23432288       23686386     NR_109959  LOC101927843,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12735260       12862178  NM_001080830      PRAMEF12
1    chr1   12735260       12862178  NM_001103170       AADACL3
2    chr1   12735260       12862178  NM_001294139       PRAMEF1
4    chr1   12735260       12862178     NM_152290      C1orf158
5   chr16   18359632       20633772  NM_001004060         NOMO2
6   chr16   18359632       20633772  NM_001008389          UMOD
7   chr16   18359632       20633772  NM_001012991         KNOP1
8   chr16   18359632       20633772     NM_001019        RPS15A
9   chr16   18359632       20633772  NM_001105069        ACSM2B
10  chr16   18359632       20633772  NM_001105249          TMC5
11  chr16   18359632       20633772  NM_001160364          TMC7
12  chr16   18359632       20633772  NM_001190983          COQ7
13  chr16   18359632       20633772  NM_001199022        CCP110
14  chr16   18359632       20633772  NM_001256720       CLEC19A
16  chr16   18359632       20633772  NM_001282511        NPIPA8
18  chr16   18359632       20633772  NM_001304771        GPRC5B
19  chr16   18359632       20633772  NM_001305121          IQCK
20  chr16   18359632       20633772  NM_001308157         SYT17
22  chr16   18359632       20633772  NM_001308169        ACSM2A
23  chr16   18359632       20633772  NM_001313858       ARL6IP1
24  chr16   18359632       20633772  NM_001318483        GPR139
25  chr16   18359632       20633772  NM_001324066          GDE1
27  chr16   18359632       20633772  NM_001324372         ACSM5
30  chr16   18359632       20633772     NM_001502           GP2
31  chr16   18359632       20633772     NM_015092          SMG1
38  chr16   18359632       20633772     NM_020314      C16orf62
40  chr16   18359632       20633772     NM_174924         PDILT
41  chr16   18359632       20633772     NR_003569       ABCC6P1
42  chr16   18359632       20633772     NR_028028      ITPRIPL2
43  chr16   18359632       20633772     NR_036140     MIR3179-1
44  chr16   18359632       20633772     NR_036142     MIR3180-2
45  chr16   18359632       20633772     NR_036144     MIR3180-3
46  chr16   18359632       20633772     NR_037442     MIR3670-1
47  chr16   18359632       20633772     NR_103772  LOC100288162
48  chr16   18359632       20633772     NR_106971     MIR6511A4
49  chr16   18359632       20633772     NR_107060     MIR6770-2
50  chr16   18359632       20633772     NR_119379  LOC102723385,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   14777162       17051302  NM_001033087       MACROD2
1   chr20   14777162       17051302  NM_001199866        KIF16B
2   chr20   14777162       17051302     NM_003092        SNRPB2
3   chr20   14777162       17051302     NM_020157          OTOR
6   chr20   14777162       17051302     NR_037841   MACROD2-AS1
8   chr20   14777162       17051302     NR_130924     LOC613266
10   chr5      89986         526483  NM_001080478       LRRC14B
11   chr5      89986         526483  NM_001242412          AHRR
12   chr5      89986         526483  NM_001284351        SLC9A3
13   chr5      89986         526483     NM_004168          SDHA
14   chr5      89986         526483     NM_007277         EXOC3
15   chr5      89986         526483     NM_013232         PDCD6
16   chr5      89986         526483     NM_052909      PLEKHG4B
17   chr5      89986         526483     NM_145265       CCDC127
18   chr5      89986         526483     NR_024158        PP7080
20   chr5      89986         526483     NR_104613         HRAT5
21   chr5      89986         526483     NR_125375  LOC100288152
22   chr5      89986         526483     NR_126522     EXOC3-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21783860       22277675  NM_001001912         OR4E2
1   chr14   21783860       22277675  NM_001005465        OR10G3
2   chr14   21783860       22277675  NM_001005466        OR10G2
3   chr14   21783860       22277675  NM_001163380         RAB2B
4   chr14   21783860       22277675  NM_001170629          CHD8
5   chr14   21783860       22277675  NM_001303523          TOX4
6   chr14   21783860       22277675  NM_001317107         OR4E1
7   chr14   21783860       22277675     NM_007192       SUPT16H
8   chr14   21783860       22277675     NM_019852        METTL3
9   chr14   21783860       22277675     NM_020366       RPGRIP1
12  chr14   21783860       22277675     NR_002916        SNORD8
13  chr14   21783860       22277675     NR_003029        SNORD9
14  chr14   21783860       22277675     NR_111966         SALL2
16  chr16   82987371       83146780  NM_001220488         CDH13
18  chr16   82987371       83146780     NR_110937  LOC101928417
19   chr7   64024491       64169164  NM_001282360        ZNF107
20   chr7   64024491       64169164     NR_033245     LOC641746
21   chr7   64024491       64169164     NR_077227  LOC100128885
23   chr7   64024491       64169164     NR_106898       MIR6839
24   chr7  110626781      110757102  NM_001099658         LRRN3
25   chr7  110626781      110757102  NM_001244606        IMMP2L
27   chr7  142996598      143122625     NM_000083         CLCN1
28   chr7  142996598      143122625     NM_001224         CASP2
29   chr7  142996598      143122625  NM_001278297       FAM131B
30   chr7  142996598      143122625  NM_001322263  LOC100507507
31   chr7  142996598      143122625     NM_003461           ZYX
32   chr7  142996598      143122625     NM_005232         EPHA1
35   chr7  142996598      143122625     NR_033897     EPHA1-AS1
36   chr7  142996598      143122625     NR_106952       MIR6892
37   chr9   39133503       39581844  NM_001085452     SPATA31A1
38   chr9   39133503       39581844     NM_033655       CNTNAP3
39   chr9   39133503       39581844     NR_003528       ZNF658B
40   chr9   39133503       39581844     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   22336067       23009911     NR_047040  LINC00424
1  chr13   22336067       23009911     NR_103810  LINC00540
2  chr16   18549209       18653092  NM_001004060      NOMO2
3  chr16   18549209       18653092     NR_003569    ABCC6P1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21671411       21920408  NM_001170629       CHD8
1   chr14   21671411       21920408     NM_007192    SUPT16H
2   chr14   21671411       21920408     NM_020366    RPGRIP1
4   chr14   21671411       21920408     NM_031314     HNRNPC
5   chr14   21671411       21920408     NR_002916     SNORD8
6   chr14   21671411       21920408     NR_003029     SNORD9
7   chr14   21671411       21920408     NR_038970  LINC00641
9    chr3  105268974      105395561  NM_001243281      ALCAM
10   chr3  105268974      105395561  NM_001321786       CBLB
17   chr4  190437528      190580916     NR_121679  LINC01262
18   chr9  132338860      132501231  NM_001286796      NTMT1
22   chr9  132338860      132501231     NM_004878      PTGES
23   chr9  132338860      132501231     NM_016307      PRRX2
24   chr9  132338860      132501231     NM_177999       ASB6
25   chr9  132338860      132501231     NM_199350    C9orf50
26   chr9  132338860      132501231     NR_132102  PRRX2-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  144726499      144843503  NM_001277444     NBPF9
1    chr1  144726499      144843503  NM_001278267    NBPF20
2    chr1  144726499      144843503     NR_102405     NBPF8
3   chr14   21831309       21979129  NM_001163380     RAB2B
4   chr14   21831309       21979129  NM_001170629      CHD8
5   chr14   21831309       21979129  NM_001303523      TOX4
6   chr14   21831309       21979129     NM_007192   SUPT16H
7   chr14   21831309       21979129     NM_019852    METTL3
10  chr14   21831309       21979129     NR_002916    SNORD8
11  chr14   21831309       21979129     NR_003029    SNORD9
12   chr8    6810169        6971970  NM_001302265    DEFA1B
13   chr8    6810169        6971970     NM_004084     DEFA1
15   chr8    6810169        6971970     NM_005217     DEFA3
16   chr8    6810169        6971970     NM_021010     DEFA5
17   chr8    6810169        6971970     NR_029386   DEFA10P
18   chr8    6810169        6971970     NR_036686    DEFT1P
20   chr8    6810169        6971970     NR_073408    DEFA9P
21   chr8    6810169        6971970     NR_073421   DEFA11P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145316675      145443240  NM_001277444         NBPF9
1    chr1  145316675      145443240  NM_001278267        NBPF20
2    chr1  145316675      145443240  NM_001302371        NBPF10
3    chr1  145316675      145443240  NM_001313972         TXNIP
5    chr1  145316675      145443240     NM_145277          HFE2
6    chr1  145316675      145443240     NR_104217       NBPF25P
7    chr1  145316675      145443240     NR_125967  LOC101928979
8   chr14   21898498       21998796  NM_001163380         RAB2B
9   chr14   21898498       21998796  NM_001170629          CHD8
10  chr14   21898498       21998796  NM_001303523          TOX4
11  chr14   21898498       21998796     NM_019852        METTL3
14  chr14   21898498       21998796     NR_111966         SALL2
16   chr3  118746565      118932505  NM_001015887        IGSF11
17   chr3  118746565      118932505     NM_006952         UPK1B
19   chr3  118746565      118932505     NM_152539       C3orf30
20   chr3  118746565      118932505     NM_212543       B4GALT4,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr15   99940338      100145344     NM_005587        MEF2A
1    chr2   46972746       47138646  NM_001171506        MCFD2
4    chr2   46972746       47138646     NM_014011        SOCS5
6    chr2   46972746       47138646     NR_024452    LINC01119
7    chr2   46972746       47138646     NR_034099    LINC01118
8   chr20   14684951       14927078     NM_080676      MACROD2
9   chr20   14684951       14927078     NR_037841  MACROD2-AS1
11  chr22   19047751       19152435  NM_001184781        DGCR2
12  chr22   19047751       19152435     NM_005315         GSC2
13  chr22   19047751       19152435     NM_022719       DGCR14
14  chr22   19047751       19152435     NM_053006        TSSK2
15   chr7  111200714      111353070  NM_001244606       IMMP2L
17   chr7  123457195      123611808  NM_001174044        SPAM1
20   chr7  123457195      123611808     NM_012269        HYAL4
21   chr7  123457195      123611808     NR_002731       HYALP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12719832       12855596  NM_001013630       AADACL4
1    chr1   12719832       12855596  NM_001080830      PRAMEF12
2    chr1   12719832       12855596  NM_001103170       AADACL3
3    chr1   12719832       12855596  NM_001294139       PRAMEF1
5    chr1   12719832       12855596     NM_152290      C1orf158
6    chr1   12766517       14152979  NM_001006624          PDPN
7    chr1   12766517       14152979  NM_001007257         PRDM2
8    chr1   12766517       14152979  NM_001009611       PRAMEF4
9    chr1   12766517       14152979  NM_001010847        LRRC38
10   chr1   12766517       14152979  NM_001010889       PRAMEF6
12   chr1   12766517       14152979  NM_001010890       PRAMEF9
13   chr1   12766517       14152979  NM_001012276       PRAMEF8
16   chr1   12766517       14152979  NM_001013407       PRAMEF5
18   chr1   12766517       14152979  NM_001013631      HNRNPCL1
19   chr1   12766517       14152979  NM_001024661      PRAMEF14
21   chr1   12766517       14152979  NM_001039361      PRAMEF10
23   chr1   12766517       14152979  NM_001080830      PRAMEF12
24   chr1   12766517       14152979  NM_001098376      PRAMEF15
26   chr1   12766517       14152979  NM_001099790      PRAMEF19
28   chr1   12766517       14152979  NM_001099850      PRAMEF18
30   chr1   12766517       14152979  NM_001099851      PRAMEF17
32   chr1   12766517       14152979  NM_001099852      PRAMEF20
34   chr1   12766517       14152979  NM_001100631      PRAMEF22
36   chr1   12766517       14152979  NM_001103170       AADACL3
38   chr1   12766517       14152979  NM_001136561      HNRNPCL2
39   chr1   12766517       14152979  NM_001146181      HNRNPCL3
40   chr1   12766517       14152979  NM_001146344      PRAMEF11
41   chr1   12766517       14152979  NM_001291381     PRAMEF33P
43   chr1   12766517       14152979  NM_001294139       PRAMEF1
44   chr1   12766517       14152979  NM_001300891      PRAMEF27
47   chr1   12766517       14152979  NM_001302551      HNRNPCL4
48   chr1   12766517       14152979  NM_001306072      PRAMEF26
49   chr1   12766517       14152979  NM_001310134      PRAMEF25
53   chr1   12766517       14152979     NM_023014       PRAMEF2
54   chr1   12766517       14152979     NM_152290      C1orf158
56   chr1   12766517       14152979     NR_111945     PRAMEF36P
58  chr15   28662895       30201256  NM_001130414         APBA2
59  chr15   28662895       30201256  NM_001282468       GOLGA8M
60  chr15   28662895       30201256  NM_001301025          TJP1
63  chr15   28662895       30201256     NM_015307      FAM189A1
64  chr15   28662895       30201256     NM_138704        NSMCE3
65  chr15   28662895       30201256     NR_026589       WHAMMP2
66  chr15   28662895       30201256     NR_033351       GOLGA8F
67  chr15   28662895       30201256     NR_033353       GOLGA8G
68  chr15   28662895       30201256     NR_036443       HERC2P9
69  chr15   28662895       30201256     NR_036475  LOC100289656
70  chr15   28662895       30201256     NR_037599     PDCD6IPP2
71  chr15   28662895       30201256     NR_039734     MIR4509-3
73  chr15   28662895       30201256     NR_047567     GOLGA6L7P
74  chr15   28662895       30201256     NR_135221  LOC100130111
75  chr17   63460485       63567900     NM_004655         AXIN2
76   chr7  110501926      110715578  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr22   17257150       17366962  NM_175878      XKR3
1  chr22   17257150       17366962  NR_003607   HSFY1P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16410145       16596264  NM_001282511        NPIPA8
1   chr16   16410145       16596264     NR_036447        PKD1P1
2   chr16   16410145       16596264     NR_103772  LOC100288162
3   chr16   16410145       16596264     NR_106766     MIR6511A1
4   chr16   16410145       16596264     NR_106971     MIR6511A4
5   chr16   16410145       16596264     NR_107060     MIR6770-2
6   chr18   35129346       35753907     NM_020180         CELF4
7   chr18   35129346       35753907     NR_036202       MIR4318
8   chr21   28101853       28315418     NM_006988       ADAMTS1
9   chr21   28101853       28315418     NM_007038       ADAMTS5
10   chr6  162503307      162648582     NM_013988         PARK2
11   chr7   85116269       85322589     NR_134240     LINC00972
12   chr7  110615889      110728717  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr22   19014147       19222814  NM_001184781      DGCR2
1  chr22   19014147       19222814  NM_001256534    SLC25A1
2  chr22   19014147       19222814     NM_001835     CLTCL1
3  chr22   19014147       19222814     NM_005315       GSC2
5  chr22   19014147       19222814     NM_022719     DGCR14
6  chr22   19014147       19222814     NM_053006      TSSK2
7  chr22   19014147       19222814     NR_024157     DGCR11
8  chr22   19014147       19222814     NR_103767  LINC01311
9  chr22   19014147       19222814     NR_110533      DGCR5,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63141441       63266164     NR_047029  LINC00448
1   chr15   28524750       28990686  NM_001282468    GOLGA8M
2   chr15   28524750       28990686     NM_004667      HERC2
3   chr15   28524750       28990686     NR_026589    WHAMMP2
4   chr15   28524750       28990686     NR_033351    GOLGA8F
6   chr15   28524750       28990686     NR_033353    GOLGA8G
8   chr15   28524750       28990686     NR_036443    HERC2P9
9   chr15   28524750       28990686     NR_039734  MIR4509-3
11   chr7   75109552       75258299  NM_001099415    POM121C
12   chr7   75109552       75258299  NM_001243198       HIP1
13   chr7   75109552       75258299  NM_001306141     SPDYE5
14   chr7   75109552       75258299     NR_028059     PMS2P3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12    9440013       10037420  NM_001190765         KLRF2
1   chr12    9440013       10037420  NM_001197319        CLEC2D
2   chr12    9440013       10037420  NM_001267701        CLECL1
3   chr12    9440013       10037420  NM_001291823         KLRF1
4   chr12    9440013       10037420     NM_001781          CD69
5   chr12    9440013       10037420     NM_002258         KLRB1
6   chr12    9440013       10037420     NM_005127        CLEC2B
8   chr12    9440013       10037420     NR_002814     LOC374443
9   chr12    9440013       10037420     NR_024374     LOC642846
10  chr12    9440013       10037420     NR_033399        DDX12P
15  chr12    9440013       10037420     NR_120479  LOC101930452
16  chr12    9440013       10037420     NR_120481  LOC101928030
17  chr15   28548696       28959121  NM_001282468       GOLGA8M
18  chr15   28548696       28959121     NM_004667         HERC2
19  chr15   28548696       28959121     NR_033351       GOLGA8F
21  chr15   28548696       28959121     NR_033353       GOLGA8G
23  chr15   28548696       28959121     NR_036443       HERC2P9
24  chr15   28548696       28959121     NR_039734     MIR4509-3
26   chr2  186427891      186886198     NM_173651         FSIP2
27   chr2  186427891      186886198     NR_110214  LOC101927196
30   chr2  186427891      186886198     NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12809408       13035156  NM_001009611       PRAMEF4
1    chr1   12809408       13035156  NM_001010889       PRAMEF6
2    chr1   12809408       13035156  NM_001010890       PRAMEF9
3    chr1   12809408       13035156  NM_001012276       PRAMEF8
4    chr1   12809408       13035156  NM_001013631      HNRNPCL1
5    chr1   12809408       13035156  NM_001080830      PRAMEF12
6    chr1   12809408       13035156  NM_001146181      HNRNPCL3
7    chr1   12809408       13035156  NM_001146344      PRAMEF11
8    chr1   12809408       13035156  NM_001294139       PRAMEF1
9    chr1   12809408       13035156  NM_001302551      HNRNPCL4
11   chr1   12809408       13035156     NM_023014       PRAMEF2
12   chr1   12809408       13035156     NM_152290      C1orf158
13   chr1  244984202      245148288  NM_001143943        EFCAB2
15   chr1  244984202      245148288  NM_001312871         COX20
17   chr1  244984202      245148288     NM_004501        HNRNPU
20   chr1  244984202      245148288     NR_111907  LOC101928068
21   chr1  244984202      245148288     NR_132782      SNORA100
22  chr14   21580325       22116317  NM_001004731        OR5AU1
23  chr14   21580325       22116317  NM_001005465        OR10G3
24  chr14   21580325       22116317  NM_001005466        OR10G2
25  chr14   21580325       22116317  NM_001163380         RAB2B
26  chr14   21580325       22116317  NM_001170629          CHD8
27  chr14   21580325       22116317  NM_001303523          TOX4
28  chr14   21580325       22116317     NM_007192       SUPT16H
29  chr14   21580325       22116317     NM_019852        METTL3
30  chr14   21580325       22116317     NM_020366       RPGRIP1
32  chr14   21580325       22116317     NM_031314        HNRNPC
34  chr14   21580325       22116317     NR_002916        SNORD8
35  chr14   21580325       22116317     NR_003029        SNORD9
36  chr14   21580325       22116317     NR_038970     LINC00641
38  chr14   21580325       22116317     NR_111966         SALL2
40  chr15   28624365       29025563  NM_001282468       GOLGA8M
41  chr15   28624365       29025563     NR_026589       WHAMMP2
42  chr15   28624365       29025563     NR_033351       GOLGA8F
44  chr15   28624365       29025563     NR_033353       GOLGA8G
46  chr15   28624365       29025563     NR_036443       HERC2P9
47  chr15   28624365       29025563     NR_039734     MIR4509-3
49  chr21   22341980       22629697     NM_004540         NCAM2
50   chr7  110606682      110729908  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18342192       18443895  NM_001282511        NPIPA8
1  chr16   18342192       18443895     NR_103772  LOC100288162
2  chr16   18342192       18443895     NR_106971     MIR6511A4
3   chr3  197225706      197349812     NM_203314          BDH1
5   chr3  197225706      197349812     NR_003266     LOC220729
6   chr7  110547708      110823902  NM_001099658         LRRN3
7   chr7  110547708      110823902  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21651264       22171825  NM_001001912         OR4E2
1   chr14   21651264       22171825  NM_001005465        OR10G3
2   chr14   21651264       22171825  NM_001005466        OR10G2
3   chr14   21651264       22171825  NM_001163380         RAB2B
4   chr14   21651264       22171825  NM_001170629          CHD8
5   chr14   21651264       22171825  NM_001303523          TOX4
6   chr14   21651264       22171825  NM_001317107         OR4E1
7   chr14   21651264       22171825     NM_007192       SUPT16H
8   chr14   21651264       22171825     NM_019852        METTL3
9   chr14   21651264       22171825     NM_020366       RPGRIP1
11  chr14   21651264       22171825     NM_031314        HNRNPC
13  chr14   21651264       22171825     NR_002916        SNORD8
14  chr14   21651264       22171825     NR_003029        SNORD9
15  chr14   21651264       22171825     NR_038970     LINC00641
17  chr14   21651264       22171825     NR_111966         SALL2
19  chr15   28809762       28914057     NR_036443       HERC2P9
20   chr2  186026040      186256275     NR_136319  LOC105373782
21   chr6  128614400      128737871  NM_001291982         PTPRK
23   chr7   64051807       64154517  NM_001282360        ZNF107
24   chr7   64051807       64154517     NR_077227  LOC100128885
26   chr7   64051807       64154517     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21771384       21876820  NM_001170629          CHD8
1   chr14   21771384       21876820     NM_007192       SUPT16H
2   chr14   21771384       21876820     NM_020366       RPGRIP1
4   chr14   21771384       21876820     NR_002916        SNORD8
5   chr14   21771384       21876820     NR_003029        SNORD9
6   chr20   14689007       14816673     NM_080676       MACROD2
7   chr21   23037862       23168508     NR_038872     LINC00317
8   chr21   23037862       23168508     NR_109958     LINC01425
9    chr5    6148026        6818652  NM_001145161       UBE2QL1
10   chr5    6148026        6818652  NM_001171805         PAPD7
12   chr5    6148026        6818652  NM_001324322        SRD5A1
13   chr5    6148026        6818652     NM_032286         MED10
14   chr5    6148026        6818652     NR_024423     LINC01018
16   chr5    6148026        6818652     NR_028351      FLJ33360
17   chr5    6148026        6818652     NR_037947         NSUN2
18   chr5    6148026        6818652     NR_103771  LOC100505625
19   chr7   29453041       29576938  NM_001293069          CHN2,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr12   98000212       98221927     NR_077240     LOC643711
2    chr12  130209377      130384101     NM_133448      TMEM132D
3    chr16   18526071       18920017  NM_001004060         NOMO2
4    chr16   18526071       18920017     NM_001019        RPS15A
5    chr16   18526071       18920017  NM_001313858       ARL6IP1
6    chr16   18526071       18920017     NM_015092          SMG1
8    chr16   18526071       18920017     NR_003569       ABCC6P1
9    chr16   21779421       22119078  NM_001164579      C16orf52
10   chr16   21779421       22119078  NM_001310148        NPIPB4
11   chr16   21779421       22119078     NM_003366        UQCRC2
12   chr16   21779421       22119078     NM_173615         VWA3A
13   chr16   21779421       22119078     NM_173806         PDZD9
14   chr16   21779421       22119078     NR_003370        RRN3P1
15   chr16   88451012       89862208     NM_000101          CYBA
16   chr16   88451012       89862208     NM_000485          APRT
17   chr16   88451012       89862208     NM_000512         GALNS
18   chr16   88451012       89862208  NM_001012762          CTU2
19   chr16   88451012       89862208  NM_001083314        CHMP1A
20   chr16   88451012       89862208  NM_001113525        ZNF276
21   chr16   88451012       89862208  NM_001127214         ACSF3
22   chr16   88451012       89862208  NM_001127464        ZNF469
23   chr16   88451012       89862208  NM_001128141         DPEP1
24   chr16   88451012       89862208  NM_001142864        PIEZO1
25   chr16   88451012       89862208  NM_001171815        RNF166
27   chr16   88451012       89862208  NM_001201407        ZNF778
28   chr16   88451012       89862208  NM_001242757      SLC22A31
29   chr16   88451012       89862208  NM_001242885  LOC100287036
30   chr16   88451012       89862208  NM_001243130         RPL13
31   chr16   88451012       89862208  NM_001256182       ANKRD11
32   chr16   88451012       89862208  NM_001271907       SPATA33
..     ...        ...            ...           ...           ...
59   chr16   88451012       89862208     NR_024347     LINC00304
60   chr16   88451012       89862208     NR_024399     SNAI3-AS1
62   chr16   88451012       89862208     NR_027703         CDK10
63   chr16   88451012       89862208     NR_036480    VPS9D1-AS1
64   chr16   88451012       89862208     NR_039873       MIR4722
67   chr16   88451012       89862208     NR_046200     LOC400558
68   chr16   88451012       89862208     NR_049821       MIR5189
70   chr16   88451012       89862208     NR_103774  LOC100289580
74   chr16   88451012       89862208     NR_110931  LOC101927817
75   chr16   88451012       89862208     NR_120387     LOC339059
77   chr16   88451012       89862208     NR_135194  LOC101927793
78   chr16   88451012       89862208     NR_136339  LOC105371414
79    chr9   41833933       43251291  NM_001012419     ANKRD20A3
81    chr9   41833933       43251291  NM_001012421     ANKRD20A2
83    chr9   41833933       43251291     NM_199244       FOXD4L4
84    chr9   41833933       43251291     NR_003670        FGF7P3
85    chr9   41833933       43251291     NR_015363         GLIDR
86    chr9   41833933       43251291     NR_026558        AQP7P3
87    chr9   41833933       43251291     NR_027472     LOC642929
88    chr9   41833933       43251291     NR_046175     LOC286297
89    chr9   41833933       43251291     NR_121570  LOC101928381
90    chr9   41833933       43251291     NR_121572      GXYLT1P3
94    chr9   41833933       43251291     NR_126048  LOC102724238
95    chr9   41833933       43251291     NR_126049     LOC554249
96    chr9   41833933       43251291     NR_135597  LOC101928195
97    chr9   41833933       43251291     NR_136299  LOC101929583
98    chr9   41833933       43251291     NR_136310  LOC105379252
100   chr9   72329414       72600609  NM_001010940      C9orf135
101   chr9   72329414       72600609  NM_001099666         PTAR1
102   chr9   72329414       72600609     NR_038833  C9orf135-AS1

[77 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245041473      245153627  NM_001143943        EFCAB2
3    chr1  245041473      245153627     NR_111907  LOC101928068
4   chr15   28591967       31508428  NM_001039841     ARHGAP11B
5   chr15   28591967       31508428  NM_001130414         APBA2
6   chr15   28591967       31508428  NM_001146094          FAN1
8   chr15   28591967       31508428  NM_001252020         TRPM1
11  chr15   28591967       31508428  NM_001282468       GOLGA8M
12  chr15   28591967       31508428  NM_001282472       GOLGA8J
13  chr15   28591967       31508428  NM_001282484       GOLGA8R
14  chr15   28591967       31508428  NM_001282490       GOLGA8H
15  chr15   28591967       31508428  NM_001301025          TJP1
19  chr15   28591967       31508428     NM_015307      FAM189A1
20  chr15   28591967       31508428     NM_017762        MTMR10
21  chr15   28591967       31508428     NM_138704        NSMCE3
22  chr15   28591967       31508428     NM_139320      CHRFAM7A
23  chr15   28591967       31508428     NR_026589       WHAMMP2
24  chr15   28591967       31508428     NR_026771  DKFZP434L187
25  chr15   28591967       31508428     NR_026858        ULK4P1
26  chr15   28591967       31508428     NR_026859        ULK4P3
27  chr15   28591967       31508428     NR_029624        MIR211
28  chr15   28591967       31508428     NR_033351       GOLGA8F
30  chr15   28591967       31508428     NR_033353       GOLGA8G
32  chr15   28591967       31508428     NR_033933       GOLGA8T
33  chr15   28591967       31508428     NR_036443       HERC2P9
34  chr15   28591967       31508428     NR_036475  LOC100289656
35  chr15   28591967       31508428     NR_037599     PDCD6IPP2
36  chr15   28591967       31508428     NR_038253  LOC100288637
38  chr15   28591967       31508428     NR_039734     MIR4509-3
40  chr15   28591967       31508428     NR_047567     GOLGA6L7P
41  chr15   28591967       31508428     NR_072991      HERC2P10
42  chr15   28591967       31508428     NR_135221  LOC100130111
43  chr15   28591967       31508428     NR_135834  LOC102725022
44  chr15   85750775       85851032  NM_001310153      GOLGA6L3
45  chr17   21803319       22146553  NM_001190452      MTRNR2L1
46  chr17   21803319       22146553     NR_027084      FLJ36000
47  chr17   21803319       22146553     NR_028336       FAM27E5
48   chr2  108807733      108989232  NM_001008743       SULT1C3
49   chr2  108807733      108989232     NM_001056       SULT1C2
51   chr2  108807733      108989232     NR_037191     SULT1C2P1
52   chr2  108807733      108989232     NR_131251     LINC01594
53   chr2  242464578      242809032  NM_001164356         THAP4
54   chr2  242464578      242809032  NM_001165031         DTYMK
55   chr2  242464578      242809032  NM_001167601          NEU4
57   chr2  242464578      242809032  NM_001287249        D2HGDH
58   chr2  242464578      242809032  NM_001330161          ING5
60   chr2  242464578      242809032     NM_005018         PDCD1
62   chr2  242464578      242809032     NM_022134       GAL3ST2
64   chr2  242464578      242809032     NM_032515           BOK
65   chr2  242464578      242809032     NM_178326         ATG4B
66   chr2  242464578      242809032     NR_033346       BOK-AS1
67   chr6   20854984       20962732     NM_017774        CDKAL1
68   chr7  145975206      146170504     NM_014141       CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108008532      108110874  NM_001113228         NTNG1
3   chr14   21859811       22003944  NM_001163380         RAB2B
4   chr14   21859811       22003944  NM_001170629          CHD8
5   chr14   21859811       22003944  NM_001303523          TOX4
6   chr14   21859811       22003944     NM_019852        METTL3
9   chr14   21859811       22003944     NR_002916        SNORD8
10  chr14   21859811       22003944     NR_003029        SNORD9
11  chr14   21859811       22003944     NR_111966         SALL2
13  chr15   82778220       83024883  NM_001164465     GOLGA6L10
14  chr15   82778220       83024883  NM_001291420      GOLGA6L9
16  chr15   82778220       83024883     NR_004847      UBE2Q2P2
17  chr15   82778220       83024883     NR_026811     GOLGA2P10
19  chr15   82778220       83024883     NR_045529     ADAMTS7P1
20  chr15   82778220       83024883     NR_102747     LOC727751
21  chr15   82778220       83024883     NR_111943         RPS17
23  chr15   82778220       83024883     NR_111962    GOLGA6L17P
24  chr15   82778220       83024883     NR_120378  LOC102724034
25  chr17   47883988       49507944     NM_000088        COL1A1
26  chr17   47883988       49507944  NM_001018137          NME2
29  chr17   47883988       49507944  NM_001077503          TAC4
30  chr17   47883988       49507944  NM_001144070         ABCC3
31  chr17   47883988       49507944  NM_001166131          EME1
32  chr17   47883988       49507944  NM_001168215        TMEM92
33  chr17   47883988       49507944  NM_001199158          KAT7
34  chr17   47883988       49507944  NM_001199898          PDK2
37  chr17   47883988       49507944  NM_001242791      FLJ45513
38  chr17   47883988       49507944  NM_001243877          TOB1
40  chr17   47883988       49507944  NM_001251971         SPAG9
41  chr17   47883988       49507944  NM_001257359        SAMD14
42  chr17   47883988       49507944  NM_001258372       SPATA20
..    ...        ...            ...           ...           ...
46  chr17   47883988       49507944  NM_001330341       WFIKKN2
47  chr17   47883988       49507944     NM_001934          DLX4
48  chr17   47883988       49507944     NM_002204         ITGA3
53  chr17   47883988       49507944     NM_005220          DLX3
55  chr17   47883988       49507944     NM_016001         UTP18
56  chr17   47883988       49507944     NM_016504        MRPL27
57  chr17   47883988       49507944     NM_017643         MBTD1
58  chr17   47883988       49507944     NM_017957          EPN3
59  chr17   47883988       49507944     NM_018346         RSAD1
60  chr17   47883988       49507944     NM_018509        LRRC59
61  chr17   47883988       49507944     NM_018896       CACNA1G
62  chr17   47883988       49507944     NM_022167         XYLT2
63  chr17   47883988       49507944     NM_032133       MYCBPAP
64  chr17   47883988       49507944     NM_032595       PPP1R9B
65  chr17   47883988       49507944     NM_052855       ANKRD40
69  chr17   47883988       49507944     NM_198175          NME1
70  chr17   47883988       49507944     NR_024193         HILS1
71  chr17   47883988       49507944     NR_037149     NME1-NME2
72  chr17   47883988       49507944     NR_038230     LOC284080
73  chr17   47883988       49507944     NR_038439   CACNA1G-AS1
74  chr17   47883988       49507944     NR_038458      TOB1-AS1
75  chr17   47883988       49507944     NR_073199     LINC00483
76  chr17   47883988       49507944     NR_107026       MIR8059
78  chr17   47883988       49507944     NR_110751  LOC101927274
79  chr17   47883988       49507944     NR_110806  LOC101927230
80  chr17   47883988       49507944     NR_122104     LOC440446
81  chr17   47883988       49507944     NR_125805    TMEM92-AS1
82  chr17   47883988       49507944     NR_135553          SGCA
83  chr17   47883988       49507944     NR_135675  LOC105371824
84   chr5   24051800       24166754     NR_131245       C5orf17

[63 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  237516473      237646731     NM_001035          RYR2
1    chr1  237516473      237646731     NR_039626       MIR4428
2   chr14   21827350       21929931  NM_001163380         RAB2B
3   chr14   21827350       21929931  NM_001170629          CHD8
4   chr14   21827350       21929931     NM_007192       SUPT16H
7   chr14   21827350       21929931     NR_002916        SNORD8
8   chr14   21827350       21929931     NR_003029        SNORD9
9   chr16   71118153       71285604  NM_001198542         HYDIN
12   chr4  190130455      190870576     NM_004477          FRG1
13   chr4  190130455      190870576     NR_121679     LINC01262
14   chr4  190130455      190870576     NR_132380     LINC01596
15   chr4  190130455      190870576     NR_135513  LOC105379514
16   chr5  161100370      161207647     NM_000811        GABRA6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   14919987       15092908     NM_015209          KAZN
2    chr1  245012699      246859093  NM_001139459          CNST
3    chr1  245012699      246859093  NM_001143943        EFCAB2
4    chr1  245012699      246859093  NM_001167740         SMYD3
6    chr1  245012699      246859093     NM_004501        HNRNPU
7    chr1  245012699      246859093     NM_018012        KIF26B
8    chr1  245012699      246859093     NM_022366         TFB2M
12   chr1  245012699      246859093     NR_040002     LOC255654
13   chr1  245012699      246859093     NR_111907  LOC101928068
14   chr1  245012699      246859093     NR_132782      SNORA100
15  chr14   21684665       21943810  NM_001163380         RAB2B
16  chr14   21684665       21943810  NM_001170629          CHD8
17  chr14   21684665       21943810     NM_007192       SUPT16H
18  chr14   21684665       21943810     NM_020366       RPGRIP1
20  chr14   21684665       21943810     NM_031314        HNRNPC
22  chr14   21684665       21943810     NR_002916        SNORD8
23  chr14   21684665       21943810     NR_003029        SNORD9
24  chr14   47918271       48074865  NM_001113498         MDGA2
25  chr14   55627518       55779978     NM_014750        DLGAP5
26  chr14   55627518       55779978     NM_017943        FBXO34
28   chr9   39062750       39200149     NM_033655       CNTNAP3
29   chr9   41921485       42279748     NR_003670        FGF7P3
30   chr9   41921485       42279748     NR_015363         GLIDR
33   chr9   41921485       42279748     NR_126048  LOC102724238
34   chr9   41921485       42279748     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr17    5511644        5757257  NR_040000    LOC339166
1  chr20   14756777       15047847  NM_080676      MACROD2
2  chr20   14756777       15047847  NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48411958       48907513  NM_001005512        OR4A47
1   chr12   27165961       27311034  NM_001080406      C12orf71
2   chr12   27165961       27311034  NM_001271811         MED21
3   chr12   27165961       27311034     NM_016551        TM7SF3
4   chr14   81614225       81997621  NM_001244984         SEL1L
5   chr14   81614225       81997621  NM_001256430         STON2
6   chr14   81614225       81997621  NM_001278940        GTF2A1
10  chr14   81614225       81997621     NR_003021       SNORA79
11  chr14   81614225       81997621     NR_109999  LOC100506700
12  chr14   81614225       81997621     NR_135252  LOC101928504
13  chr15   30257371       30390271  NM_001282472       GOLGA8J
14  chr15   30257371       30390271  NM_001301025          TJP1
15  chr16   16392140       16534033  NM_001282511        NPIPA8
16  chr16   16392140       16534033     NR_036140     MIR3179-1
17  chr16   16392140       16534033     NR_036141     MIR3180-1
18  chr16   16392140       16534033     NR_036142     MIR3180-2
19  chr16   16392140       16534033     NR_036447        PKD1P1
20  chr16   16392140       16534033     NR_103772  LOC100288162
21  chr16   16392140       16534033     NR_106766     MIR6511A1
22  chr16   16392140       16534033     NR_106971     MIR6511A4
23  chr16   16392140       16534033     NR_107060     MIR6770-2
24  chr16   16392140       16534033     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   81838364       81977742     NR_120571  MIR4300HG
1   chr14   21816822       21964113  NM_001163380      RAB2B
2   chr14   21816822       21964113  NM_001170629       CHD8
3   chr14   21816822       21964113  NM_001303523       TOX4
4   chr14   21816822       21964113     NM_007192    SUPT16H
5   chr14   21816822       21964113     NM_020366    RPGRIP1
8   chr14   21816822       21964113     NR_002916     SNORD8
9   chr14   21816822       21964113     NR_003029     SNORD9
10   chr7    3259922        3363144     NM_152744       SDK1
11   chr7  110644758      110826219  NM_001099658      LRRN3
12   chr7  110644758      110826219  NM_001244606     IMMP2L
14   chr9   39087214       39371636  NM_001085452  SPATA31A1
15   chr9   39087214       39371636     NM_033655    CNTNAP3
16   chr9   39087214       39371636     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr15   28631508       29016497  NM_001282468      GOLGA8M
1   chr15   28631508       29016497     NR_026589      WHAMMP2
2   chr15   28631508       29016497     NR_033351      GOLGA8F
4   chr15   28631508       29016497     NR_033353      GOLGA8G
6   chr15   28631508       29016497     NR_036443      HERC2P9
7   chr15   28631508       29016497     NR_039734    MIR4509-3
9    chr2   97434047       97564054  NM_001122646      FAM178B
11   chr2   97434047       97564054     NM_016466      ANKRD39
13   chr2   97434047       97564054     NM_017623        CNNM3
14   chr2   97434047       97564054     NM_017789       SEMA4C
15   chr2   97434047       97564054     NM_020184        CNNM4
16   chr2   97434047       97564054     NM_144994      ANKRD23
17   chr2   97434047       97564054     NR_036074      MIR3127
18  chr20   14834772       14948174     NM_080676      MACROD2
19  chr20   14834772       14948174     NR_037841  MACROD2-AS1
21   chr5      72602         201739  NM_001080478      LRRC14B
22   chr5      72602         201739     NM_052909     PLEKHG4B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87744402       87996733     NM_006769          LMO4
1    chr1   87744402       87996733     NR_038324     LINC01364
2   chr14   21854151       22121092  NM_001005465        OR10G3
3   chr14   21854151       22121092  NM_001005466        OR10G2
4   chr14   21854151       22121092  NM_001163380         RAB2B
5   chr14   21854151       22121092  NM_001170629          CHD8
6   chr14   21854151       22121092  NM_001303523          TOX4
7   chr14   21854151       22121092     NM_019852        METTL3
10  chr14   21854151       22121092     NR_002916        SNORD8
11  chr14   21854151       22121092     NR_003029        SNORD9
12  chr14   21854151       22121092     NR_111966         SALL2
14  chr14   39107949       39254201     NR_039982     LINC00639
15   chr2    1090539        1222340     NM_018968         SNTG2
16   chr7  124879421      125218905     NR_110183  LOC101928254
17   chr7  124879421      125218905     NR_110188  LOC101928283
18   chr9   31272243       31381567     NR_135134     LINC01243,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17246521       17787566  NM_001037814          GAB4
1   chr22   17246521       17787566  NM_001163079         CECR6
2   chr22   17246521       17787566  NM_001282227         CECR1
4   chr22   17246521       17787566  NM_001289905        IL17RA
5   chr22   17246521       17787566     NM_017829         CECR5
8   chr22   17246521       17787566     NM_175878          XKR3
10  chr22   17246521       17787566     NR_003607       HSFY1P1
11  chr22   17246521       17787566     NR_015352         CECR7
12  chr22   17246521       17787566     NR_024482     CECR5-AS1
13  chr22   17246521       17787566     NR_038398         CECR3
14  chr22   17246521       17787566     NR_103793  LOC100996342,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   39688922       39918871  NM_001167959      TMEM178A
2   chr2   39688922       39918871     NR_037875     LOC728730
3   chr2  110212598      110395417  NM_001099289        SH3RF3
4   chr2  110212598      110395417  NM_001321504        SEPT10
6   chr2  110212598      110395417     NM_023016        SOWAHC
7   chr2  186414122      187708653  NM_001144999         ITGAV
9   chr2  186414122      187708653     NM_018471        ZC3H15
10  chr2  186414122      187708653     NM_173651         FSIP2
11  chr2  186414122      187708653     NM_177454       FAM171B
12  chr2  186414122      187708653     NM_182521        ZSWIM2
13  chr2  186414122      187708653     NR_110214  LOC101927196
16  chr2  186414122      187708653     NR_110218     LINC01473
17  chr2  186414122      187708653     NR_144453     FSIP2-AS1
19  chr7  110500971      110637404  NM_001244606        IMMP2L
21  chr9   38984233       39116560     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   14899405       15005095     NM_015209         KAZN
2   chr14   21756782       22018885  NM_001163380        RAB2B
3   chr14   21756782       22018885  NM_001170629         CHD8
4   chr14   21756782       22018885  NM_001303523         TOX4
5   chr14   21756782       22018885     NM_007192      SUPT16H
6   chr14   21756782       22018885     NM_019852       METTL3
7   chr14   21756782       22018885     NM_020366      RPGRIP1
10  chr14   21756782       22018885     NR_002916       SNORD8
11  chr14   21756782       22018885     NR_003029       SNORD9
12  chr14   21756782       22018885     NR_111966        SALL2
14  chr20   14778904       14884963     NM_080676      MACROD2
15  chr20   14778904       14884963     NR_037841  MACROD2-AS1
16   chr3  148099847      149068295     NM_000096           CP
17   chr3  148099847      149068295  NM_001184721         GYG1
18   chr3  148099847      149068295  NM_001184723      TM4SF18
19   chr3  148099847      149068295  NM_001308258         HPS3
20   chr3  148099847      149068295  NM_001318934         HLTF
22   chr3  148099847      149068295     NM_001870         CPA3
23   chr3  148099847      149068295     NM_001871         CPB1
24   chr3  148099847      149068295     NM_009585        AGTR1
29   chr3  148099847      149068295     NR_046648     HLTF-AS1
30   chr9   15004840       15128725     NR_003920    LOC389705
31   chr9   39032077       39140428     NM_033655      CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   40304998       40618362  NM_001258419        LRRC4C
2   chr14   21856713       21980659  NM_001163380         RAB2B
3   chr14   21856713       21980659  NM_001170629          CHD8
4   chr14   21856713       21980659  NM_001303523          TOX4
5   chr14   21856713       21980659     NM_019852        METTL3
8   chr14   21856713       21980659     NR_002916        SNORD8
9   chr14   21856713       21980659     NR_003029        SNORD9
10  chr16    7036696        7577957  NM_001142334        RBFOX1
14   chr2  133057831      133282734  NM_001304449        ZNF806
15   chr2  133057831      133282734     NM_001508         GPR39
16   chr2  133057831      133282734     NR_135203       FAM201B
17   chr5  106146277      106504031     NR_104671  LOC102467213
18   chr5  152192442      152698026     NR_109877     LINC01470
19   chr9    9871998       10002703     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr15   20935160       21402795  NM_001277303          POTEB2
1   chr15   20935160       21402795     NM_207355          POTEB3
2   chr15   20935160       21402795     NR_027992          NBEAP1
3   chr15   20935160       21402795     NR_028506           NF1P2
4   chr15   20935160       21402795     NR_036062       MIR3118-2
5   chr15   20935160       21402795     NR_040094       LINC01193
6   chr15   20935160       21402795     NR_049895       MIR5701-2
8   chr16   16365131       16466463  NM_001004067           NOMO3
9   chr16   16365131       16466463     NR_036140       MIR3179-1
10  chr16   16365131       16466463     NR_036141       MIR3180-1
11  chr16   16365131       16466463     NR_036142       MIR3180-2
12  chr16   16365131       16466463     NR_036447          PKD1P1
13  chr16   16365131       16466463     NR_103772    LOC100288162
14  chr16   16365131       16466463     NR_106766       MIR6511A1
15  chr16   16365131       16466463     NR_106971       MIR6511A4
16  chr16   16365131       16466463     NR_107060       MIR6770-2
17  chr16   16365131       16466463     NR_128713       MIR3670-4
18  chr16   21430691       21567093     NM_130464          NPIPB3
19  chr16   21430691       21567093     NR_002594        SLC7A5P2
20  chr16   21430691       21567093     NR_024456    LOC100190986
21  chr16   21430691       21567093     NR_027155          SMG1P3
22  chr16   21430691       21567093     NR_049833       MIR3680-2
23  chr17     125861         225925  NM_001190411          RPH3AL
24  chr17     125861         225925     NR_040011    LOC100506388
25   chr3     835257         964440     NR_110118       LINC01266
26   chr6    5173990        8701080     NM_000129           F13A1
27   chr6    5173990        8701080  NM_001003699           RREB1
28   chr6    5173990        8701080  NM_001135650          EEF1E1
29   chr6    5173990        8701080  NM_001142541         SLC35B3
30   chr6    5173990        8701080  NM_001145549          TXNDC5
31   chr6    5173990        8701080  NM_001164840           LYRM4
33   chr6    5173990        8701080  NM_001170692           CAGE1
35   chr6    5173990        8701080  NM_001199322         BLOC1S5
36   chr6    5173990        8701080  NM_001278710            NRN1
39   chr6    5173990        8701080  NM_001318872           FARS2
40   chr6    5173990        8701080  NM_001319034             DSP
41   chr6    5173990        8701080     NM_001718            BMP6
42   chr6    5173990        8701080     NM_004271            LY86
48   chr6    5173990        8701080     NM_031480           RIOK1
49   chr6    5173990        8701080     NM_152551         SNRNP48
51   chr6    5173990        8701080     NR_003703        SCARNA27
52   chr6    5173990        8701080     NR_004855            HULC
53   chr6    5173990        8701080     NR_026970        LY86-AS1
54   chr6    5173990        8701080     NR_027712        PIP5K1P1
55   chr6    5173990        8701080     NR_037616  BLOC1S5-TXNDC5
56   chr6    5173990        8701080     NR_037618  EEF1E1-BLOC1S5
57   chr6    5173990        8701080     NR_038979    LOC100506207
59   chr6    5173990        8701080     NR_049863         MIR5683
60   chr6    5173990        8701080     NR_107007         MIR7853
61   chr6    5173990        8701080     NR_110842    LOC101927950
62   chr6    5173990        8701080     NR_120448            SSR1
63   chr6    5173990        8701080     NR_125846    LOC101927972
64   chr6    5173990        8701080     NR_126015       LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11    4213680        4416509  NM_001005161         OR52B4
1   chr11    4213680        4416509     NM_003141         TRIM21
2   chr11    4213680        4416509     NR_047550   LOC100506082
3   chr15   28702123       28881533     NR_033351        GOLGA8F
4   chr15   28702123       28881533     NR_033353        GOLGA8G
5   chr15   28702123       28881533     NR_039734      MIR4509-3
6   chr16   15006378       15512009  NM_001128423         MPV17L
7   chr16   15006378       15512009  NM_001270767          NTAN1
8   chr16   15006378       15512009  NM_001277325         NPIPA5
9   chr16   15006378       15512009  NM_001285445         PDXDC1
14  chr16   15006378       15512009  NM_001301064           RRN3
16  chr16   15006378       15512009     NM_006985         NPIPA1
17  chr16   15006378       15512009     NR_037466      MIR3180-4
18  chr16   15006378       15512009     NR_103772   LOC100288162
19  chr16   15006378       15512009     NR_106775      MIR6511B1
20  chr16   15006378       15512009     NR_106965      MIR6511B2
21  chr16   15006378       15512009     NR_106970      MIR6511A3
22  chr16   15006378       15512009     NR_107060      MIR6770-2
23  chr16   15006378       15512009     NR_123721  PKD1P6-NPIPP1
25  chr16   15006378       15512009     NR_125434   LOC100505915
26   chr4   98369243       98569765     NM_174952          STPG2
27   chr4   98369243       98569765     NR_102713      STPG2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28731214       29116687  NM_001282468       GOLGA8M
1   chr15   28731214       29116687     NR_026589       WHAMMP2
2   chr15   28731214       29116687     NR_033351       GOLGA8F
3   chr15   28731214       29116687     NR_033353       GOLGA8G
4   chr15   28731214       29116687     NR_036443       HERC2P9
5   chr15   28731214       29116687     NR_036475  LOC100289656
6   chr15   28731214       29116687     NR_037599     PDCD6IPP2
7   chr15   28731214       29116687     NR_039734     MIR4509-3
8   chr15   28731214       29116687     NR_047567     GOLGA6L7P
9    chr4   72965612       73114339     NM_004885        NPFFR2
11   chr7  110632079      110813488  NM_001099658         LRRN3
12   chr7  110632079      110813488  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    5163392        5469286  NM_001047160          NET1
1   chr10    5163392        5469286     NM_001818        AKR1C4
2   chr10    5163392        5469286     NM_024803        TUBAL3
3   chr10    5163392        5469286     NM_053049          UCN3
4   chr10    5163392        5469286     NR_027916       AKR1C8P
5   chr11   89131226       89263043  NM_001143837          NOX4
11  chr12   20919587       21071519     NM_019844       SLCO1B3
12  chr14   21804871       22773319  NM_001001912         OR4E2
13  chr14   21804871       22773319  NM_001005465        OR10G3
14  chr14   21804871       22773319  NM_001005466        OR10G2
15  chr14   21804871       22773319  NM_001163380         RAB2B
16  chr14   21804871       22773319  NM_001170629          CHD8
17  chr14   21804871       22773319  NM_001303523          TOX4
18  chr14   21804871       22773319  NM_001317107         OR4E1
19  chr14   21804871       22773319     NM_007192       SUPT16H
20  chr14   21804871       22773319     NM_019852        METTL3
21  chr14   21804871       22773319     NM_020366       RPGRIP1
24  chr14   21804871       22773319     NR_002916        SNORD8
25  chr14   21804871       22773319     NR_003029        SNORD9
26  chr14   21804871       22773319     NR_111966         SALL2
28   chr2  242454790      242889413  NM_001164356         THAP4
29   chr2  242454790      242889413  NM_001165031         DTYMK
30   chr2  242454790      242889413  NM_001167601          NEU4
32   chr2  242454790      242889413  NM_001287249        D2HGDH
33   chr2  242454790      242889413  NM_001330161          ING5
35   chr2  242454790      242889413     NM_005018         PDCD1
37   chr2  242454790      242889413     NM_022134       GAL3ST2
39   chr2  242454790      242889413     NM_032515           BOK
40   chr2  242454790      242889413     NM_173821          RTP5
41   chr2  242454790      242889413     NM_178326         ATG4B
42   chr2  242454790      242889413     NR_033346       BOK-AS1
43   chr2  242454790      242889413     NR_110220     LINC01237
44   chr2  242454790      242889413     NR_135766     LOC285095
47  chr21   29455168       29840004     NR_126010     LOC284825
49  chr21   29455168       29840004     NR_126012  LOC101927973
50   chr5   66259031       66491449  NM_001164664         MAST4
54   chr5   66259031       66491449     NM_005582         CD180
56   chr5   66259031       66491449     NR_111908     MAST4-AS1
57   chr7   64027681       64145697  NM_001282360        ZNF107
58   chr7   64027681       64145697     NR_033245     LOC641746
59   chr7   64027681       64145697     NR_077227  LOC100128885
61   chr7   64027681       64145697     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    6723654        6862523     NR_038291     LINC00707
1   chr10    6723654        6862523     NR_108074     LINC00706
2   chr10    6723654        6862523     NR_138480         LINP1
3   chr11   67347583       67542260     NM_000695       ALDH3B2
4   chr11   67347583       67542260     NM_000852         GSTP1
6   chr11   67347583       67542260  NM_001166102        NDUFV1
7   chr11   67347583       67542260  NM_001243750         NUDT8
8   chr11   67347583       67542260     NM_005995         TBX10
9   chr11   67347583       67542260     NM_080658          ACY3
11  chr11   67347583       67542260     NR_033791        DOC2GP
12  chr11   67347583       67542260     NR_130935      C11orf72
13  chr14   21784156       21974260  NM_001163380         RAB2B
14  chr14   21784156       21974260  NM_001170629          CHD8
15  chr14   21784156       21974260  NM_001303523          TOX4
16  chr14   21784156       21974260     NM_007192       SUPT16H
17  chr14   21784156       21974260     NM_019852        METTL3
18  chr14   21784156       21974260     NM_020366       RPGRIP1
21  chr14   21784156       21974260     NR_002916        SNORD8
22  chr14   21784156       21974260     NR_003029        SNORD9
23  chr14   21770899       21888915  NM_001170629          CHD8
24  chr14   21770899       21888915     NM_007192       SUPT16H
25  chr14   21770899       21888915     NM_020366       RPGRIP1
27  chr14   21770899       21888915     NR_002916        SNORD8
28  chr14   21770899       21888915     NR_003029        SNORD9
29  chr14   81625928       82118714  NM_001244984         SEL1L
30  chr14   81625928       82118714  NM_001256430         STON2
31  chr14   81625928       82118714  NM_001278940        GTF2A1
35  chr14   81625928       82118714     NR_003021       SNORA79
36  chr14   81625928       82118714     NR_109999  LOC100506700
37  chr14   81625928       82118714     NR_110074     LINC01467
38  chr14   81625928       82118714     NR_135252  LOC101928504
39  chr21   13530771       15279292     NM_174981         POTED
40  chr21   13530771       15279292     NR_026755      CYP4F29P
41  chr21   13530771       15279292     NR_026916    ANKRD30BP2
42  chr21   13530771       15279292     NR_036061     MIR3118-1
43  chr21   13530771       15279292     NR_036164     MIR3156-3
44  chr21   13530771       15279292     NR_110544  LOC102724188
45  chr21   13530771       15279292     NR_128718     MIR8069-2
46   chr4    9073357        9293914  NM_001256852      USP17L10
47   chr4    9073357        9293914  NM_001256853      USP17L12
49   chr4    9073357        9293914  NM_001256854      USP17L11
52   chr4    9073357        9293914  NM_001256855      USP17L13
53   chr4    9073357        9293914  NM_001256857      USP17L17
54   chr4    9073357        9293914  NM_001256860      USP17L19
55   chr4    9073357        9293914  NM_001256861      USP17L20
56   chr4    9073357        9293914  NM_001256894      USP17L15
57   chr6  162858462      163386485  NM_001080378         PACRG
59   chr6  162858462      163386485     NM_013988         PARK2
60   chr7   12152744       12545050  NM_001134232      TMEM106B
61   chr7   12152744       12545050  NM_001135924          VWDE
62   chr7   12152744       12545050     NR_136261  LOC102725191,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143724144      144104081  NM_001123068       PPIAL4G
1    chr1  143724144      144104081  NM_001287385        FAM72C
2    chr1  143724144      144104081  NM_001345942        FAM72D
6    chr1  143724144      144104081     NR_104014     LINC01138
8   chr11   95923060       96260732  NM_001261833          JRKL
9   chr11   95923060       96260732  NM_001318737        CCDC82
11  chr11   95923060       96260732     NM_032427         MAML2
12  chr11   95923060       96260732     NR_036125      MIR1260B
13  chr11   95923060       96260732     NR_047481      JRKL-AS1
14  chr11   95923060       96260732     NR_135097  LOC105369443
15  chr16   21494608       21675166  NM_001077180        METTL9
17  chr16   21494608       21675166     NM_005849         IGSF6
18  chr16   21494608       21675166     NR_002594      SLC7A5P2
19  chr16   21494608       21675166     NR_027155        SMG1P3
20  chr16   21494608       21675166     NR_049833     MIR3680-2
21  chr16   21494608       21675166     NR_110930  LOC101927814
22  chr17   21209920       21345865  NM_001194958        KCNJ18
23  chr17   21209920       21345865  NM_001316332        MAP2K3
25  chr17   21209920       21345865     NM_021012        KCNJ12
26   chr2  242405231      242562842  NM_001164356         THAP4
27   chr2  242405231      242562842  NM_001271978         STK25
30   chr2  242405231      242562842  NM_001282983         FARP2
33   chr2  242405231      242562842     NM_032515           BOK
34   chr2  242405231      242562842     NR_033346       BOK-AS1
35   chr2  242405231      242562842     NR_036083       MIR3133
36   chr4  190501595      190695260     NR_121679     LINC01262
37   chr4  190501595      190695260     NR_135513  LOC105379514
38   chr5   95276182       95429493     NM_012081          ELL2
39   chr5   95276182       95429493     NR_030309        MIR583
40   chr5   95276182       95429493     NR_130776  LOC101929710,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21844356       21968341  NM_001163380      RAB2B
1   chr14   21844356       21968341  NM_001170629       CHD8
2   chr14   21844356       21968341  NM_001303523       TOX4
3   chr14   21844356       21968341     NM_007192    SUPT16H
4   chr14   21844356       21968341     NM_019852     METTL3
7   chr14   21844356       21968341     NR_002916     SNORD8
8   chr14   21844356       21968341     NR_003029     SNORD9
9   chr16    7050060        7173223  NM_001142334     RBFOX1
12   chr3  162932090      163032811     NR_033945  LINC01192
13   chr4    9086905        9294261  NM_001256852   USP17L10
14   chr4    9086905        9294261  NM_001256853   USP17L12
16   chr4    9086905        9294261  NM_001256854   USP17L11
19   chr4    9086905        9294261  NM_001256855   USP17L13
20   chr4    9086905        9294261  NM_001256857   USP17L17
21   chr4    9086905        9294261  NM_001256860   USP17L19
22   chr4    9086905        9294261  NM_001256861   USP17L20
23   chr4    9086905        9294261  NM_001256894   USP17L15
24   chr8   48439823       48681201  NM_001080394      SPIDR
25   chr8   48439823       48681201     NM_005195      CEBPD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   86107064       86412819     NM_017953        ZNHIT6
1    chr1   86107064       86412819     NM_152890       COL24A1
2   chr10  100642939      100800210  NM_001166244         HPSE2
3   chr10  100642939      100800210     NR_106762       MIR6507
4   chr16   18108897       19314977  NM_001004060         NOMO2
5   chr16   18108897       19314977     NM_001019        RPS15A
6   chr16   18108897       19314977  NM_001160364          TMC7
7   chr16   18108897       19314977  NM_001190983          COQ7
8   chr16   18108897       19314977  NM_001256720       CLEC19A
9   chr16   18108897       19314977  NM_001282511        NPIPA8
11  chr16   18108897       19314977  NM_001308157         SYT17
12  chr16   18108897       19314977  NM_001313858       ARL6IP1
15  chr16   18108897       19314977     NM_015092          SMG1
19  chr16   18108897       19314977     NR_003569       ABCC6P1
20  chr16   18108897       19314977     NR_028028      ITPRIPL2
21  chr16   18108897       19314977     NR_036140     MIR3179-1
22  chr16   18108897       19314977     NR_036142     MIR3180-2
23  chr16   18108897       19314977     NR_036144     MIR3180-3
24  chr16   18108897       19314977     NR_037442     MIR3670-1
25  chr16   18108897       19314977     NR_103772  LOC100288162
26  chr16   18108897       19314977     NR_106971     MIR6511A4
27  chr16   18108897       19314977     NR_107060     MIR6770-2
28  chr16   18108897       19314977     NR_119379  LOC102723385
30   chr5   59790258       59893922  NM_001145208       DEPDC1B
31   chr5   59790258       59893922     NR_024617         PART1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  237526677      237646679     NM_001035          RYR2
1    chr1  237526677      237646679     NR_039626       MIR4428
2   chr11  102689093      102958396  NM_001318739       DCUN1D5
3   chr11  102689093      102958396     NM_002422          MMP3
4   chr11  102689093      102958396     NM_002426         MMP12
5   chr11  102689093      102958396     NM_002427         MMP13
6   chr11  102689093      102958396     NR_038390        WTAPP1
7   chr16   18364559       18503487  NM_001282511        NPIPA8
8   chr16   18364559       18503487     NR_036142     MIR3180-2
9   chr16   18364559       18503487     NR_036144     MIR3180-3
10  chr16   18364559       18503487     NR_037442     MIR3670-1
11  chr16   18364559       18503487     NR_103772  LOC100288162
12  chr16   18364559       18503487     NR_106971     MIR6511A4
13  chr16   18364559       18503487     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145351262      145772719  NM_001012758        NUDT17
1    chr1  145351262      145772719  NM_001039888      ANKRD34A
2    chr1  145351262      145772719  NM_001097612        GPR89A
3    chr1  145351262      145772719  NM_001184795        PEX11B
4    chr1  145351262      145772719  NM_001201325         PDZK1
5    chr1  145351262      145772719  NM_001277444         NBPF9
6    chr1  145351262      145772719  NM_001278267        NBPF20
7    chr1  145351262      145772719  NM_001280799       ANKRD35
8    chr1  145351262      145772719  NM_001302371        NBPF10
9    chr1  145351262      145772719  NM_001303040        ITGA10
10   chr1  145351262      145772719  NM_001303456        POLR3C
11   chr1  145351262      145772719  NM_001313972         TXNIP
13   chr1  145351262      145772719     NM_005105         RBM8A
14   chr1  145351262      145772719     NM_006099         PIAS3
17   chr1  145351262      145772719     NM_007053         CD160
18   chr1  145351262      145772719     NM_014455        RNF115
19   chr1  145351262      145772719     NM_032305       POLR3GL
20   chr1  145351262      145772719     NM_145277          HFE2
21   chr1  145351262      145772719     NM_153713         LIX1L
22   chr1  145351262      145772719     NR_002328        GNRHR2
26   chr1  145351262      145772719     NR_104217       NBPF25P
27   chr1  145351262      145772719     NR_106794       MIR6736
28   chr1  145351262      145772719     NR_125967  LOC101928979
29  chr11   25073203       25248849  NM_001009909         LUZP2
30  chr14   21781908       21913909  NM_001170629          CHD8
31  chr14   21781908       21913909     NM_007192       SUPT16H
32  chr14   21781908       21913909     NM_020366       RPGRIP1
34  chr14   21781908       21913909     NR_002916        SNORD8
35  chr14   21781908       21913909     NR_003029        SNORD9
36   chr3  189538938      189649807  NM_001114979          TP63
41   chr3  189538938      189649807     NR_030642        MIR944
42   chr4   98355025       98830440     NM_174952         STPG2
43   chr4   98355025       98830440     NR_102713     STPG2-AS1
44   chr9   30194176       30505380     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72635301       75185221  NM_001136262      ATXN7L3B
1   chr12   72635301       75185221     NM_013381         TRHDE
2   chr12   72635301       75185221     NR_026836     TRHDE-AS1
4   chr12   72635301       75185221     NR_038300  LOC100507377
5   chr12   72635301       75185221     NR_110130  LOC101928137
6   chr14   21851392       22036760  NM_001163380         RAB2B
7   chr14   21851392       22036760  NM_001170629          CHD8
8   chr14   21851392       22036760  NM_001303523          TOX4
9   chr14   21851392       22036760     NM_007192       SUPT16H
10  chr14   21851392       22036760     NM_019852        METTL3
13  chr14   21851392       22036760     NR_002916        SNORD8
14  chr14   21851392       22036760     NR_003029        SNORD9
15  chr14   21851392       22036760     NR_111966         SALL2
17  chr15   28695143       28943321     NR_033351       GOLGA8F
18  chr15   28695143       28943321     NR_033353       GOLGA8G
19  chr15   28695143       28943321     NR_036443       HERC2P9
20  chr15   28695143       28943321     NR_039734     MIR4509-3
21  chr16   15232324       15349805  NM_001285449        PDXDC1
23  chr16   15232324       15349805     NR_037466     MIR3180-4
24  chr17   14040920       14504089  NM_001007530        CDRT15
25  chr17   14040920       14504089     NM_001303         COX10
26  chr17   14040920       14504089     NM_006041      HS3ST3B1
27  chr17   14040920       14504089     NR_026880      MGC12916
28   chr2   34150344       34298061     NR_126403     LINC01317
29   chr2   34150344       34298061     NR_132381     LINC01318
30   chr4    8605507        9141331  NM_001014447           CPZ
31   chr4    8605507        9141331  NM_001040071     LOC650293
32   chr4    8605507        9141331  NM_001306142          HMX1
34   chr5  106823454      107008822     NM_001962         EFNA5
35   chr9   38972802       39164417     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21851997       21966372  NM_001163380     RAB2B
1   chr14   21851997       21966372  NM_001170629      CHD8
2   chr14   21851997       21966372  NM_001303523      TOX4
3   chr14   21851997       21966372     NM_007192   SUPT16H
4   chr14   21851997       21966372     NM_019852    METTL3
7   chr14   21851997       21966372     NR_002916    SNORD8
8   chr14   21851997       21966372     NR_003029    SNORD9
9   chr19   10323158       10458478     NM_000201     ICAM1
10  chr19   10323158       10458478  NM_001031734     FDX1L
11  chr19   10323158       10458478  NM_001103167     ZGLP1
12  chr19   10323158       10458478  NM_001320608     ICAM3
13  chr19   10323158       10458478     NM_001544     ICAM4
14  chr19   10323158       10458478     NM_003259     ICAM5
15  chr19   10323158       10458478     NM_004230     S1PR2
16  chr19   10323158       10458478     NM_015956     MRPL4
17  chr19   10323158       10458478     NM_133452    RAVER1
19  chr19   10323158       10458478     NR_036206   MIR4322,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   79123012       79299985  NM_001098816         TENM4
1   chr11   79123012       79299985     NR_049841       MIR5579
2   chr14   21914489       23166321  NM_001001912         OR4E2
3   chr14   21914489       23166321  NM_001005465        OR10G3
4   chr14   21914489       23166321  NM_001005466        OR10G2
5   chr14   21914489       23166321  NM_001163380         RAB2B
6   chr14   21914489       23166321  NM_001303523          TOX4
7   chr14   21914489       23166321  NM_001317107         OR4E1
8   chr14   21914489       23166321     NM_001344          DAD1
9   chr14   21914489       23166321     NM_019852        METTL3
10  chr14   21914489       23166321     NM_022060         ABHD4
12  chr14   21914489       23166321     NR_111966         SALL2
14  chr17   48027245       48144556     NM_001934          DLX4
15  chr17   48027245       48144556     NM_002204         ITGA3
16  chr17   48027245       48144556     NM_005220          DLX3
18  chr17   48027245       48144556     NR_038230     LOC284080
19   chr4  188305821      188515661     NR_038931     LOC339975
20   chr4  188305821      188515661     NR_110436  LOC100506272,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21823640       21971460  NM_001163380         RAB2B
1   chr14   21823640       21971460  NM_001170629          CHD8
2   chr14   21823640       21971460  NM_001303523          TOX4
3   chr14   21823640       21971460     NM_007192       SUPT16H
4   chr14   21823640       21971460     NM_019852        METTL3
7   chr14   21823640       21971460     NR_002916        SNORD8
8   chr14   21823640       21971460     NR_003029        SNORD9
9   chr14   45485437       45828382  NM_001308120       FAM179B
10  chr14   45485437       45828382  NM_001308133         FANCM
12  chr14   45485437       45828382     NM_002013         FKBP3
13  chr14   45485437       45828382     NM_017922        PRPF39
14  chr14   45485437       45828382     NM_018353      MIS18BP1
15  chr14   45485437       45828382     NR_003691      SNORD127
16   chr4  169219744      169348463  NM_001012967        DDX60L
18   chr4  169219744      169348463     NM_017631         DDX60
19   chr5   17441564       17570999     NR_134270  LOC102723526
21   chr5   17441564       17570999     NR_134273  LOC101929544
24   chr7  109564861      110140540     NR_003024       EIF3IP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   29776046       30004152  NM_001301025          TJP1
3   chr15   29776046       30004152     NM_015307      FAM189A1
4   chr15   29776046       30004152     NR_135221  LOC100130111
5    chr2   75866488       76215330  NM_001201334         GCFC2
8    chr2   75866488       76215330     NM_014763        MRPL19
9    chr4   94179643       94334256     NM_001510         GRID2
10   chr7    5595129        5903000     NM_003088         FSCN1
11   chr7    5595129        5903000     NM_207116        RNF216
12   chr7    5595129        5903000     NR_023382       ZNF815P
13   chr7    5595129        5903000     NR_046834    RNF216-IT1
14   chr7    5595129        5903000     NR_106934       MIR6874,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   27067966       27202493  NM_001171887  FGFR1OP2
2   chr12   27067966       27202493  NM_001271811     MED21
3   chr12   27067966       27202493     NM_016551    TM7SF3
4   chr12   27067966       27202493     NM_018164      ASUN
5   chr16   21796798       21936150  NM_001310148    NPIPB4
6   chr16   21796798       21936150     NR_003370    RRN3P1
7   chr17    1108643        1223597  NM_001164405    BHLHA9
8   chr17    1108643        1223597  NM_001322841       ABR
10  chr17    1108643        1223597     NM_172367     TUSC5
11   chr3  116096140      116222935  NM_001318915     LSAMP
12   chr9   20771064       20935861     NM_017794     FOCAD,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   21921591       23394269  NM_001001912       OR4E2
1   chr14   21921591       23394269  NM_001005465      OR10G3
2   chr14   21921591       23394269  NM_001005466      OR10G2
3   chr14   21921591       23394269  NM_001039619       PRMT5
4   chr14   21921591       23394269  NM_001126105      SLC7A7
6   chr14   21921591       23394269  NM_001163380       RAB2B
7   chr14   21921591       23394269  NM_001303523        TOX4
8   chr14   21921591       23394269  NM_001317107       OR4E1
9   chr14   21921591       23394269  NM_001318870      MRPL52
10  chr14   21921591       23394269  NM_001329226       LRP10
11  chr14   21921591       23394269     NM_001344        DAD1
12  chr14   21921591       23394269     NM_004995       MMP14
13  chr14   21921591       23394269     NM_005015       OXA1L
14  chr14   21921591       23394269     NM_018107       RBM23
15  chr14   21921591       23394269     NM_019852      METTL3
16  chr14   21921591       23394269     NM_022060       ABHD4
18  chr14   21921591       23394269     NM_173527        REM2
20  chr14   21921591       23394269     NR_111966       SALL2
22  chr14   21921591       23394269     NR_120599   PRMT5-AS1
23   chr3   60098228       60339246  NM_001320899        FHIT
24   chr8    7041125        7392906  NM_001040705    DEFB107B
25   chr8    7041125        7392906  NM_001081551    DEFB103A
26   chr8    7041125        7392906  NM_001164457     ZNF705G
27   chr8    7041125        7392906  NM_001205266      DEFB4B
28   chr8    7041125        7392906  NM_001256873     USP17L1
29   chr8    7041125        7392906  NM_001256874     USP17L4
30   chr8    7041125        7392906     NM_058200     SPAG11B
34   chr8    7041125        7392906     NM_080389    DEFB104A
35   chr8    7041125        7392906     NM_152250    DEFB105A
36   chr8    7041125        7392906     NM_152251    DEFB106A
37   chr8    7041125        7392906     NR_003668  DEFB109P1B
38   chr8    7041125        7392906     NR_027000   LINC00965
41   chr8    7041125        7392906     NR_027423      FAM66B,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21784515       22049270  NM_001005465     OR10G3
1   chr14   21784515       22049270  NM_001163380      RAB2B
2   chr14   21784515       22049270  NM_001170629       CHD8
3   chr14   21784515       22049270  NM_001303523       TOX4
4   chr14   21784515       22049270     NM_007192    SUPT16H
5   chr14   21784515       22049270     NM_019852     METTL3
6   chr14   21784515       22049270     NM_020366    RPGRIP1
9   chr14   21784515       22049270     NR_002916     SNORD8
10  chr14   21784515       22049270     NR_003029     SNORD9
11  chr14   21784515       22049270     NR_111966      SALL2
13  chr15   28582634       28743683     NR_033351    GOLGA8F
14  chr15   28582634       28743683     NR_033353    GOLGA8G
15  chr15   28582634       28743683     NR_039734  MIR4509-3
17   chr2   52198949       52302109     NR_135237  LOC730100
18   chr7   18437824       19002346  NM_001204144      HDAC9
27   chr9   64403357       66074003  NM_001113541  SPATA31A5
28   chr9   64403357       66074003     NM_015667  SPATA31A7
29   chr9   64403357       66074003     NR_026802    FAM74A4
30   chr9   64403357       66074003     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12777258       12972818  NM_001009611       PRAMEF4
1    chr1   12777258       12972818  NM_001013631      HNRNPCL1
2    chr1   12777258       12972818  NM_001080830      PRAMEF12
3    chr1   12777258       12972818  NM_001103170       AADACL3
4    chr1   12777258       12972818  NM_001146181      HNRNPCL3
5    chr1   12777258       12972818  NM_001146344      PRAMEF11
6    chr1   12777258       12972818  NM_001294139       PRAMEF1
7    chr1   12777258       12972818  NM_001302551      HNRNPCL4
9    chr1   12777258       12972818     NM_023014       PRAMEF2
10   chr1   12777258       12972818     NM_152290      C1orf158
11  chr13   88042310       88795663     NM_015567       SLITRK5
12  chr13   88042310       88795663     NR_033829     MIR4500HG
13  chr13   88042310       88795663     NR_039722       MIR4500
14  chr13   88042310       88795663     NR_104059     LINC00397
15  chr13   88042310       88795663     NR_131919  LOC105370306
16  chr14   21856800       22078940  NM_001005465        OR10G3
17  chr14   21856800       22078940  NM_001163380         RAB2B
18  chr14   21856800       22078940  NM_001170629          CHD8
19  chr14   21856800       22078940  NM_001303523          TOX4
20  chr14   21856800       22078940     NM_019852        METTL3
23  chr14   21856800       22078940     NR_002916        SNORD8
24  chr14   21856800       22078940     NR_003029        SNORD9
25  chr14   21856800       22078940     NR_111966         SALL2
27  chr15   29733874       30119347  NM_001301025          TJP1
30  chr15   29733874       30119347     NM_015307      FAM189A1
31  chr15   29733874       30119347     NR_135221  LOC100130111,      chrom  cnv_start  cnv_terminate       tx_name          gene_name
0    chr22   17042782       20569872     NM_000407              GP1BB
1    chr22   17042782       20569872     NM_000754               COMT
2    chr22   17042782       20569872  NM_001009939              SEPT5
3    chr22   17042782       20569872  NM_001035247              UFD1L
4    chr22   17042782       20569872  NM_001037814               GAB4
5    chr22   17042782       20569872  NM_001122731             MICAL3
6    chr22   17042782       20569872  NM_001127649              PEX26
10   chr22   17042782       20569872  NM_001163079              CECR6
11   chr22   17042782       20569872  NM_001166242           C22orf39
12   chr22   17042782       20569872  NM_001178010              CDC45
13   chr22   17042782       20569872  NM_001184781              DGCR2
14   chr22   17042782       20569872  NM_001190326              DGCR8
15   chr22   17042782       20569872  NM_001193414              TUBA8
16   chr22   17042782       20569872  NM_001195226              PRODH
18   chr22   17042782       20569872  NM_001242313           TMEM191B
19   chr22   17042782       20569872  NM_001243537            CCDC188
20   chr22   17042782       20569872  NM_001244567                BID
23   chr22   17042782       20569872  NM_001256534            SLC25A1
24   chr22   17042782       20569872  NM_001270733            BCL2L13
25   chr22   17042782       20569872  NM_001278639             RANBP1
28   chr22   17042782       20569872  NM_001282227              CECR1
30   chr22   17042782       20569872  NM_001282512             TXNRD2
31   chr22   17042782       20569872  NM_001283116             TANGO2
32   chr22   17042782       20569872  NM_001288707       LOC101929372
33   chr22   17042782       20569872  NM_001289905             IL17RA
34   chr22   17042782       20569872  NM_001290046              CECR2
36   chr22   17042782       20569872  NM_001303484           SLC25A18
37   chr22   17042782       20569872  NM_001318151             MRPL40
41   chr22   17042782       20569872     NM_001670              ARVCF
42   chr22   17042782       20569872     NM_001696           ATP6V1E1
..     ...        ...            ...           ...                ...
91   chr22   17042782       20569872     NR_031618            MIR1286
92   chr22   17042782       20569872     NR_031706            MIR1306
93   chr22   17042782       20569872     NR_036168          MIR3198-1
94   chr22   17042782       20569872     NR_037412            MIR3618
95   chr22   17042782       20569872     NR_037611        SEPT5-GP1BB
97   chr22   17042782       20569872     NR_038398              CECR3
98   chr22   17042782       20569872     NR_038460          LOC284865
99   chr22   17042782       20569872     NR_039918            MIR4761
100  chr22   17042782       20569872     NR_040115  ANKRD62P1-PARP4P3
102  chr22   17042782       20569872     NR_103718          LINC00528
103  chr22   17042782       20569872     NR_103767          LINC01311
104  chr22   17042782       20569872     NR_103793       LOC100996342
105  chr22   17042782       20569872     NR_106874            MIR6816
107  chr22   17042782       20569872     NR_134584       LOC101929350
108  chr22   17042782       20569872     NR_135922       LOC102725072
109  chr22   17042782       20569872     NR_136560            FAM230A
110  chr22   17042782       20569872     NR_136561          LOC642643
111  chr22   17042782       20569872     NR_136570       LOC100996415
112  chr22   17042782       20569872     NR_136571       LOC100996432
113  chr22   17042782       20569872     NR_136572       LOC101927859
114  chr22   17042782       20569872     NR_136574       LOC105379550
115   chr4   71415079       71536024     NM_016519               AMBN
116   chr4   71415079       71536024     NM_031889               ENAM
117   chr4   71415079       71536024     NM_144646             JCHAIN
118   chr4   94080296       94251222     NM_001510              GRID2
119   chr7  132707793      133174053  NM_001037126              EXOC4
120   chr7  132707793      133174053  NM_001317178             CHCHD3
123   chr7  132707793      133174053     NR_037427            MIR3654
124   chr7  132707793      133174053     NR_106749            MIR6133
125   chr7  132707793      133174053     NR_133931       LOC105375512

[94 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21839970       21943822  NM_001163380     RAB2B
1   chr14   21839970       21943822  NM_001170629      CHD8
2   chr14   21839970       21943822     NM_007192   SUPT16H
5   chr14   21839970       21943822     NR_002916    SNORD8
6   chr14   21839970       21943822     NR_003029    SNORD9
7    chr2   56577490       56760679  NM_001080433   CCDC85A
8    chr2   75904407       76066396  NM_001201334     GCFC2
11   chr7  117597188      118078435     NM_016200      LSM8
12   chr7  117597188      118078435     NM_019644    ANKRD7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12838228       13813594  NM_001009611       PRAMEF4
1    chr1   12838228       13813594  NM_001010847        LRRC38
2    chr1   12838228       13813594  NM_001010889       PRAMEF6
4    chr1   12838228       13813594  NM_001010890       PRAMEF9
5    chr1   12838228       13813594  NM_001012276       PRAMEF8
8    chr1   12838228       13813594  NM_001013407       PRAMEF5
10   chr1   12838228       13813594  NM_001013631      HNRNPCL1
11   chr1   12838228       13813594  NM_001024661      PRAMEF14
13   chr1   12838228       13813594  NM_001039361      PRAMEF10
15   chr1   12838228       13813594  NM_001098376      PRAMEF15
17   chr1   12838228       13813594  NM_001099790      PRAMEF19
19   chr1   12838228       13813594  NM_001099850      PRAMEF18
21   chr1   12838228       13813594  NM_001099851      PRAMEF17
23   chr1   12838228       13813594  NM_001099852      PRAMEF20
25   chr1   12838228       13813594  NM_001100631      PRAMEF22
27   chr1   12838228       13813594  NM_001136561      HNRNPCL2
28   chr1   12838228       13813594  NM_001146181      HNRNPCL3
29   chr1   12838228       13813594  NM_001146344      PRAMEF11
30   chr1   12838228       13813594  NM_001291381     PRAMEF33P
32   chr1   12838228       13813594  NM_001294139       PRAMEF1
33   chr1   12838228       13813594  NM_001300891      PRAMEF27
36   chr1   12838228       13813594  NM_001302551      HNRNPCL4
37   chr1   12838228       13813594  NM_001306072      PRAMEF26
38   chr1   12838228       13813594  NM_001310134      PRAMEF25
40   chr1   12838228       13813594     NM_023014       PRAMEF2
41   chr1   12838228       13813594     NR_111945     PRAMEF36P
43  chr16   15369206       16967214  NM_001004067         NOMO3
44  chr16   15369206       16967214  NM_001040113         MYH11
45  chr16   15369206       16967214  NM_001079528         ABCC6
46  chr16   15369206       16967214  NM_001128423        MPV17L
47  chr16   15369206       16967214  NM_001142469      C16orf45
48  chr16   15369206       16967214  NM_001143979          NDE1
50  chr16   15369206       16967214  NM_001184998      KIAA0430
51  chr16   15369206       16967214  NM_001277325        NPIPA5
52  chr16   15369206       16967214  NM_001282511        NPIPA8
53  chr16   15369206       16967214     NM_004996         ABCC1
56  chr16   15369206       16967214     NR_030159        MIR484
57  chr16   15369206       16967214     NR_036140     MIR3179-1
58  chr16   15369206       16967214     NR_036141     MIR3180-1
59  chr16   15369206       16967214     NR_036142     MIR3180-2
60  chr16   15369206       16967214     NR_036447        PKD1P1
61  chr16   15369206       16967214     NR_103772  LOC100288162
62  chr16   15369206       16967214     NR_106761       MIR6506
63  chr16   15369206       16967214     NR_106766     MIR6511A1
64  chr16   15369206       16967214     NR_106971     MIR6511A4
65  chr16   15369206       16967214     NR_107060     MIR6770-2
66  chr16   15369206       16967214     NR_128713     MIR3670-4
67  chr16   15369206       16967214     NR_130755         FOPNL
68   chr4  190457205      190760640     NR_121679     LINC01262
69   chr4  190457205      190760640     NR_135513  LOC105379514,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr1  143756147      143995688  NM_001123068   PPIAL4G
1  chr1  143756147      143995688  NM_001287385    FAM72C
2  chr1  143756147      143995688  NM_001345942    FAM72D
7  chr9    9465737        9596219     NM_002839     PTPRD,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2   34182507       34421727  NR_126403     LINC01317
1  chr2   34182507       34421727  NR_132381     LINC01318
2  chr7     152835         306146  NM_020223        FAM20C
3  chr7     152835         306146  NR_108065  LOC100507642
4  chr7     152835         306146  NR_134324  LOC105375115
5  chr8   16470382       16893391  NM_019851         FGF20
6  chr8   16470382       16893391  NM_181723         MICU3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   73416022       73813538     NR_110676     LINC01360
2    chr1   91873544       92343113  NM_001134419          CDC7
4    chr1   91873544       92343113  NM_001195683        TGFBR3
6   chr12   71485087       71705391     NM_004616        TSPAN8
7   chr15   28699739       28870212     NR_033351       GOLGA8F
8   chr15   28699739       28870212     NR_033353       GOLGA8G
9   chr15   28699739       28870212     NR_039734     MIR4509-3
10  chr16   16398467       16575331  NM_001282511        NPIPA8
11  chr16   16398467       16575331     NR_036141     MIR3180-1
12  chr16   16398467       16575331     NR_036142     MIR3180-2
13  chr16   16398467       16575331     NR_036447        PKD1P1
14  chr16   16398467       16575331     NR_103772  LOC100288162
15  chr16   16398467       16575331     NR_106766     MIR6511A1
16  chr16   16398467       16575331     NR_106971     MIR6511A4
17  chr16   16398467       16575331     NR_107060     MIR6770-2
18  chr16   16398467       16575331     NR_128713     MIR3670-4
19   chr2  134096317      134271963     NM_207363        NCKAP5
20   chr7  110620717      111076722  NM_001099658         LRRN3
21   chr7  110620717      111076722  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143514589      144068485  NM_001123068       PPIAL4G
1   chr1  143514589      144068485  NM_001287385        FAM72C
2   chr1  143514589      144068485  NM_001345942        FAM72D
6   chr1  143514589      144068485     NR_104014     LINC01138
7   chr1  143514589      144068485     NR_106967       MIR6077
8   chr1  143514589      144068485     NR_111930  LOC100132057
10  chr7   16480897       16802753  NM_001159767          BZW2
11  chr7   16480897       16802753  NM_001195280        LRRC72
12  chr7   16480897       16802753     NM_014399       TSPAN13
13  chr7   16480897       16802753     NM_015464       SOSTDC1
14  chr7   16480897       16802753     NM_020319        ANKMY2
15  chr7   64147538       64298179  NM_001160183        ZNF138
16  chr7   64147538       64298179  NM_001282360        ZNF107,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21838041       21974670  NM_001163380      RAB2B
1   chr14   21838041       21974670  NM_001170629       CHD8
2   chr14   21838041       21974670  NM_001303523       TOX4
3   chr14   21838041       21974670     NM_007192    SUPT16H
4   chr14   21838041       21974670     NM_019852     METTL3
7   chr14   21838041       21974670     NR_002916     SNORD8
8   chr14   21838041       21974670     NR_003029     SNORD9
9   chr15   28545395       28876729     NM_004667      HERC2
10  chr15   28545395       28876729     NR_033351    GOLGA8F
12  chr15   28545395       28876729     NR_033353    GOLGA8G
14  chr15   28545395       28876729     NR_039734  MIR4509-3
16   chr3  197226984      197345357     NM_203314       BDH1
18   chr3  197226984      197345357     NR_003266  LOC220729
19   chr6  119756228      119870116     NR_046100  LOC285762,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245008137      245135848  NM_001143943        EFCAB2
2    chr1  245008137      245135848  NM_001312871         COX20
4    chr1  245008137      245135848     NM_004501        HNRNPU
7    chr1  245008137      245135848     NR_111907  LOC101928068
8    chr1  245008137      245135848     NR_132782      SNORA100
9   chr13   25299841       25657195  NM_001184993         RNF17
10  chr13   25299841       25657195     NR_026730       TPTE2P1
11  chr13   25299841       25657195     NR_047594         CENPJ
12  chr14   21845547       21955645  NM_001163380         RAB2B
13  chr14   21845547       21955645  NM_001170629          CHD8
14  chr14   21845547       21955645  NM_001303523          TOX4
15  chr14   21845547       21955645     NM_007192       SUPT16H
18  chr14   21845547       21955645     NR_002916        SNORD8
19  chr14   21845547       21955645     NR_003029        SNORD9
20   chr3  118675281      118831875  NM_001015887        IGSF11
22   chr9   41447157       41732730  NM_001113541     SPATA31A5
23   chr9   41447157       41732730     NM_015667     SPATA31A7
24   chr9   41447157       41732730     NR_003528       ZNF658B
25   chr9   41447157       41732730     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28138691       28554680     NM_000275          OCA2
2   chr15   28138691       28554680     NM_004667         HERC2
3   chr16   16406039       16647108  NM_001282511        NPIPA8
4   chr16   16406039       16647108     NR_036447        PKD1P1
5   chr16   16406039       16647108     NR_103772  LOC100288162
6   chr16   16406039       16647108     NR_106766     MIR6511A1
7   chr16   16406039       16647108     NR_106971     MIR6511A4
8   chr16   16406039       16647108     NR_107060     MIR6770-2
9   chr19   34512870       34716277     NM_015578        LSM14A
10  chr20   14805318       15094037     NM_080676       MACROD2
11  chr20   14805318       15094037     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10    6742456        7356949  NM_001018039     SFMBT2
2   chr10    6742456        7356949     NR_038291  LINC00707
3   chr10    6742456        7356949     NR_108074  LINC00706
4   chr10    6742456        7356949     NR_132972   SNORD129
5   chr10    6742456        7356949     NR_138480      LINP1
6   chr13   46972498       47102523     NR_120426  LINC01198
7   chr14   21874368       22005091  NM_001163380      RAB2B
8   chr14   21874368       22005091  NM_001170629       CHD8
9   chr14   21874368       22005091  NM_001303523       TOX4
10  chr14   21874368       22005091     NM_019852     METTL3
13  chr14   21874368       22005091     NR_111966      SALL2
15  chr15   52782300       52913313  NM_001142495      MYO5A
16  chr15   52782300       52913313  NM_001286495    FAM214A
17  chr15   52782300       52913313  NM_001306191     ARPP19
22   chr7  110565595      110731463  NM_001099658      LRRN3
23   chr7  110565595      110731463  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21847081       22595981  NM_001001912         OR4E2
1   chr14   21847081       22595981  NM_001005465        OR10G3
2   chr14   21847081       22595981  NM_001005466        OR10G2
3   chr14   21847081       22595981  NM_001163380         RAB2B
4   chr14   21847081       22595981  NM_001170629          CHD8
5   chr14   21847081       22595981  NM_001303523          TOX4
6   chr14   21847081       22595981  NM_001317107         OR4E1
7   chr14   21847081       22595981     NM_007192       SUPT16H
8   chr14   21847081       22595981     NM_019852        METTL3
11  chr14   21847081       22595981     NR_002916        SNORD8
12  chr14   21847081       22595981     NR_003029        SNORD9
13  chr14   21847081       22595981     NR_111966         SALL2
15  chr17   47940671       48215983  NM_001199898          PDK2
18  chr17   47940671       48215983  NM_001257359        SAMD14
19  chr17   47940671       48215983     NM_001934          DLX4
20  chr17   47940671       48215983     NM_002204         ITGA3
22  chr17   47940671       48215983     NM_005220          DLX3
23  chr17   47940671       48215983     NM_032595       PPP1R9B
25  chr17   47940671       48215983     NR_038230     LOC284080
26  chr20   14845423       16143945  NM_001033087       MACROD2
28  chr20   14845423       16143945     NR_037841   MACROD2-AS1
30  chr20   14845423       16143945     NR_130924     LOC613266
32   chr7  124926960      125032726     NR_110188  LOC101928283
33   chr8      69366         194424  NM_001005504        OR4F21
34   chr8      69366         194424  NM_001042415        ZNF596
39   chr8      69366         194424     NR_003572     RPL23AP53,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr20   14639476       14916870  NM_080676      MACROD2
1  chr20   14639476       14916870  NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   54770295       55011673     NR_031628       MIR1297
1   chr14   21775544       22012288  NM_001163380         RAB2B
2   chr14   21775544       22012288  NM_001170629          CHD8
3   chr14   21775544       22012288  NM_001303523          TOX4
4   chr14   21775544       22012288     NM_007192       SUPT16H
5   chr14   21775544       22012288     NM_019852        METTL3
6   chr14   21775544       22012288     NM_020366       RPGRIP1
9   chr14   21775544       22012288     NR_002916        SNORD8
10  chr14   21775544       22012288     NR_003029        SNORD9
11  chr14   21775544       22012288     NR_111966         SALL2
13   chr2   77946139       78139111     NR_110288  LOC101927967
14   chr4   69225254       69475990     NM_001077       UGT2B17
15   chr4   69225254       69475990     NM_014058     TMPRSS11E
16   chr5  125627678      125766547  NM_001146319        GRAMD3
18   chr7  110567291      111082502  NM_001099658         LRRN3
19   chr7  110567291      111082502  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63377308       63626303     NR_120403     LINC00448
1   chr14   47741442       47950798  NM_001113498         MDGA2
4   chr16   16376062       16581137  NM_001004067         NOMO3
5   chr16   16376062       16581137  NM_001282511        NPIPA8
6   chr16   16376062       16581137     NR_036140     MIR3179-1
7   chr16   16376062       16581137     NR_036141     MIR3180-1
8   chr16   16376062       16581137     NR_036142     MIR3180-2
9   chr16   16376062       16581137     NR_036447        PKD1P1
10  chr16   16376062       16581137     NR_103772  LOC100288162
11  chr16   16376062       16581137     NR_106766     MIR6511A1
12  chr16   16376062       16581137     NR_106971     MIR6511A4
13  chr16   16376062       16581137     NR_107060     MIR6770-2
14  chr16   16376062       16581137     NR_128713     MIR3670-4
15   chr7   64042313       64164425  NM_001282360        ZNF107
16   chr7   64042313       64164425     NR_033245     LOC641746
17   chr7   64042313       64164425     NR_077227  LOC100128885
19   chr7   64042313       64164425     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67217985       67354269     NM_000852         GSTP1
1   chr11   67217985       67354269  NM_001078650       TMEM134
2   chr11   67217985       67354269  NM_001300895         CABP4
4   chr11   67217985       67354269  NM_001302959           AIP
5   chr11   67217985       67354269  NM_001318496         CABP2
7   chr11   67217985       67354269     NM_004910       PITPNM1
8   chr11   67217985       67354269     NM_005851       CDK2AP2
10  chr11   67217985       67354269     NM_206997        GPR152
12  chr11   67217985       67354269     NR_106810       MIR6752
13  chr20   40512181       40795674     NM_133170         PTPRT
14  chr22   17235657       17659576  NM_001037814          GAB4
15  chr22   17235657       17659576  NM_001163079         CECR6
16  chr22   17235657       17659576  NM_001289905        IL17RA
17  chr22   17235657       17659576     NM_017829         CECR5
20  chr22   17235657       17659576     NM_175878          XKR3
21  chr22   17235657       17659576     NR_003607       HSFY1P1
22  chr22   17235657       17659576     NR_015352         CECR7
23  chr22   17235657       17659576     NR_024482     CECR5-AS1
24  chr22   17235657       17659576     NR_103793  LOC100996342
25   chr5  117457833      117584546     NR_104997  LOC102467224,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18111063       18608919  NM_001004060         NOMO2
1   chr16   18111063       18608919  NM_001282511        NPIPA8
2   chr16   18111063       18608919     NR_003569       ABCC6P1
3   chr16   18111063       18608919     NR_036140     MIR3179-1
4   chr16   18111063       18608919     NR_036142     MIR3180-2
5   chr16   18111063       18608919     NR_036144     MIR3180-3
6   chr16   18111063       18608919     NR_037442     MIR3670-1
7   chr16   18111063       18608919     NR_103772  LOC100288162
8   chr16   18111063       18608919     NR_106971     MIR6511A4
9   chr16   18111063       18608919     NR_107060     MIR6770-2
10   chr2   97415044       97542419  NM_001122646       FAM178B
12   chr2   97415044       97542419     NM_016466       ANKRD39
14   chr2   97415044       97542419     NM_017623         CNNM3
15   chr2   97415044       97542419     NM_017789        SEMA4C
16   chr2   97415044       97542419     NM_020184         CNNM4
17   chr2   97415044       97542419     NM_144994       ANKRD23
18   chr2   97415044       97542419     NR_036074       MIR3127
19   chr6  136809826      136995941  NM_001198608          MAP7
23   chr6  136809826      136995941     NM_005923        MAP3K5
24   chr6  136809826      136995941     NR_125858  LOC101928461
25   chr7  110751002      110877944  NM_001099658         LRRN3
26   chr7  110751002      110877944  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   67214106       67316816  NM_001078650    TMEM134
1   chr11   67214106       67316816  NM_001300895      CABP4
3   chr11   67214106       67316816  NM_001302959        AIP
4   chr11   67214106       67316816  NM_001318496      CABP2
6   chr11   67214106       67316816     NM_004910    PITPNM1
7   chr11   67214106       67316816     NM_005851    CDK2AP2
9   chr11   67214106       67316816     NM_206997     GPR152
11  chr11   67214106       67316816     NR_106810    MIR6752
12  chr14   21795413       21928211  NM_001163380      RAB2B
13  chr14   21795413       21928211  NM_001170629       CHD8
14  chr14   21795413       21928211     NM_007192    SUPT16H
15  chr14   21795413       21928211     NM_020366    RPGRIP1
18  chr14   21795413       21928211     NR_002916     SNORD8
19  chr14   21795413       21928211     NR_003029     SNORD9
20  chr17   47990043       48173196  NM_001199898       PDK2
23  chr17   47990043       48173196     NM_001934       DLX4
24  chr17   47990043       48173196     NM_002204      ITGA3
26  chr17   47990043       48173196     NM_005220       DLX3
28  chr17   47990043       48173196     NR_038230  LOC284080
29   chr3    1885089        2270313     NM_175607      CNTN4
30   chr3    1885089        2270313     NR_046555  CNTN4-AS2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21815518       21967241  NM_001163380     RAB2B
1  chr14   21815518       21967241  NM_001170629      CHD8
2  chr14   21815518       21967241  NM_001303523      TOX4
3  chr14   21815518       21967241     NM_007192   SUPT16H
4  chr14   21815518       21967241     NM_019852    METTL3
5  chr14   21815518       21967241     NM_020366   RPGRIP1
8  chr14   21815518       21967241     NR_002916    SNORD8
9  chr14   21815518       21967241     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67346634       67488705     NM_000695       ALDH3B2
1   chr11   67346634       67488705     NM_000852         GSTP1
3   chr11   67346634       67488705  NM_001166102        NDUFV1
4   chr11   67346634       67488705  NM_001243750         NUDT8
5   chr11   67346634       67488705     NM_005995         TBX10
6   chr11   67346634       67488705     NM_080658          ACY3
8   chr11   67346634       67488705     NR_033791        DOC2GP
9   chr11   67346634       67488705     NR_130935      C11orf72
10  chr22   17199677       17306954     NM_175878          XKR3
11  chr22   17199677       17306954     NR_134584  LOC101929350
12   chr3  156022389      156169296  NM_001308217        KCNAB1
17   chr3  156022389      156169296     NR_046618    KCNAB1-AS1
18   chr7   75356821       75591564     NM_000941           POR
19   chr7   75356821       75591564  NM_001040457        RHBDD2
20   chr7   75356821       75591564  NM_001243198          HIP1
21   chr7   75356821       75591564     NM_002991         CCL24
22   chr7   75356821       75591564     NM_006072         CCL26
23   chr7   75356821       75591564     NR_002955      SNORA14A
24   chr7   75356821       75591564     NR_039795       MIR4651,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  224733047      224870071  NM_001322302         CNIH3
4   chr13   71711508       71832325     NR_047699     LINC00348
5   chr14   21923829       22049437  NM_001005465        OR10G3
6   chr14   21923829       22049437  NM_001163380         RAB2B
7   chr14   21923829       22049437  NM_001303523          TOX4
8   chr14   21923829       22049437     NM_019852        METTL3
10  chr14   21923829       22049437     NR_111966         SALL2
12  chr15   22130169       22291191     NR_015416     LOC727924
13  chr15   22130169       22291191     NR_028506         NF1P2
14  chr15   22130169       22291191     NR_110480  LOC101927079
15  chr15   22130169       22291191     NR_128721     MIR5701-3
16   chr5   17563302       17840209     NR_134286     LOC646241
18   chr5   82426984       82536067  NM_001318012         XRCC4
20   chr7  117505402      117776353     NM_033427       CTTNBP2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81466069       81609780  NM_001278495      NUTM2B
1   chr10   81466069       81609780     NR_029407   LOC642361
2   chr10   81466069       81609780     NR_120611  NUTM2B-AS1
5   chr13   63320323       63432783     NR_047029   LINC00448
8   chr14   21755279       21870874  NM_001170629        CHD8
9   chr14   21755279       21870874     NM_007192     SUPT16H
10  chr14   21755279       21870874     NM_020366     RPGRIP1
12  chr14   21755279       21870874     NR_002916      SNORD8
13  chr14   21755279       21870874     NR_003029      SNORD9
14   chr4   66474808       66862988  NM_001281766       EPHA5
17   chr4   66474808       66862988     NR_034138   EPHA5-AS1
18   chr9     520416         636908  NM_001256876       KANK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   16302695       16535507  NM_001170798       SLC15A5
1   chr12   16302695       16535507  NM_001267598         MGST1
6   chr16   18452822       20726962  NM_001004060         NOMO2
7   chr16   18452822       20726962  NM_001008389          UMOD
8   chr16   18452822       20726962  NM_001012991         KNOP1
9   chr16   18452822       20726962     NM_001019        RPS15A
10  chr16   18452822       20726962  NM_001105069        ACSM2B
11  chr16   18452822       20726962  NM_001105249          TMC5
12  chr16   18452822       20726962  NM_001160364          TMC7
13  chr16   18452822       20726962  NM_001190983          COQ7
14  chr16   18452822       20726962  NM_001199022        CCP110
15  chr16   18452822       20726962  NM_001256720       CLEC19A
18  chr16   18452822       20726962  NM_001304771        GPRC5B
19  chr16   18452822       20726962  NM_001305121          IQCK
20  chr16   18452822       20726962  NM_001308157         SYT17
22  chr16   18452822       20726962  NM_001308169        ACSM2A
23  chr16   18452822       20726962  NM_001313858       ARL6IP1
24  chr16   18452822       20726962  NM_001318483        GPR139
25  chr16   18452822       20726962  NM_001318890         ACSM1
26  chr16   18452822       20726962  NM_001324066          GDE1
28  chr16   18452822       20726962  NM_001324372         ACSM5
31  chr16   18452822       20726962     NM_001502           GP2
32  chr16   18452822       20726962     NM_015092          SMG1
39  chr16   18452822       20726962     NM_020314      C16orf62
42  chr16   18452822       20726962     NM_174924         PDILT
43  chr16   18452822       20726962     NR_003569       ABCC6P1
44  chr16   18452822       20726962     NR_028028      ITPRIPL2
45  chr16   18452822       20726962     NR_036140     MIR3179-1
46  chr16   18452822       20726962     NR_036142     MIR3180-2
47  chr16   18452822       20726962     NR_036144     MIR3180-3
48  chr16   18452822       20726962     NR_037442     MIR3670-1
49  chr16   18452822       20726962     NR_107060     MIR6770-2
50  chr16   18452822       20726962     NR_119379  LOC102723385
52   chr3   41352400       41465690  NM_001322500          ULK4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  104642107      104858103     NM_001225         CASP4
2   chr11  104642107      104858103     NR_034064        CASP12
3   chr11  104642107      104858103     NR_034078     LOC643733
4   chr14   21899508       22256990  NM_001001912         OR4E2
5   chr14   21899508       22256990  NM_001005465        OR10G3
6   chr14   21899508       22256990  NM_001005466        OR10G2
7   chr14   21899508       22256990  NM_001163380         RAB2B
8   chr14   21899508       22256990  NM_001170629          CHD8
9   chr14   21899508       22256990  NM_001303523          TOX4
10  chr14   21899508       22256990  NM_001317107         OR4E1
11  chr14   21899508       22256990     NM_019852        METTL3
14  chr14   21899508       22256990     NR_111966         SALL2
16   chr2   50782669       50911388  NM_001330082         NRXN1
17   chr2  181896422      182024277  NM_001278554        UBE2E3
20   chr2  181896422      182024277     NR_130784  LOC101927156
21   chr5   66165632       66644831  NM_001164664         MAST4
25   chr5   66165632       66644831     NM_005582         CD180
27   chr5   66165632       66644831     NR_111908     MAST4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143532184      143912121  NM_001123068       PPIAL4G
1    chr1  143532184      143912121  NM_001287385        FAM72C
2    chr1  143532184      143912121  NM_001345942        FAM72D
6    chr1  143532184      143912121     NR_104014     LINC01138
7    chr1  143532184      143912121     NR_106967       MIR6077
8    chr1  143532184      143912121     NR_111930  LOC100132057
10  chr11    4178248        4317749     NR_047550  LOC100506082
11  chr22   19891156       20273824     NM_000754          COMT
14  chr22   19891156       20273824  NM_001190326         DGCR8
15  chr22   19891156       20273824  NM_001243537       CCDC188
16  chr22   19891156       20273824  NM_001278639        RANBP1
19  chr22   19891156       20273824  NM_001282512        TXNRD2
20  chr22   19891156       20273824  NM_001283116        TANGO2
23  chr22   19891156       20273824     NM_001670         ARVCF
26  chr22   19891156       20273824     NM_013373        ZDHHC8
27  chr22   19891156       20273824     NM_022727        TRMT2A
28  chr22   19891156       20273824     NM_023004         RTN4R
29  chr22   19891156       20273824     NR_026919     LINC00896
30  chr22   19891156       20273824     NR_029706        MIR185
31  chr22   19891156       20273824     NR_031618       MIR1286
32  chr22   19891156       20273824     NR_031706       MIR1306
33  chr22   19891156       20273824     NR_037412       MIR3618
34  chr22   19891156       20273824     NR_038460     LOC284865
35  chr22   19891156       20273824     NR_039918       MIR4761
36  chr22   19891156       20273824     NR_106874       MIR6816
37   chr3  193042977      193220694     NM_032279       ATP13A4
38   chr3  193042977      193220694     NM_198505       ATP13A5
39   chr7  123431308      123560344     NM_012269         HYAL4
40   chr7  123431308      123560344     NR_002731        HYALP1
41   chr9   39023232       39146395     NM_033655       CNTNAP3
42   chr9   41874207       42017674     NR_003670        FGF7P3
43   chr9   41874207       42017674     NR_015363         GLIDR,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143693501      143836686  NM_001123068       PPIAL4G
1   chr1  143693501      143836686     NR_104014     LINC01138
2   chr1  143693501      143836686     NR_111930  LOC100132057
3  chr22   17231145       17435343     NM_175878          XKR3
4  chr22   17231145       17435343     NR_003607       HSFY1P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143108664      143383953     NR_110761  LOC102723769
1   chr14   21828322       23034402  NM_001001912         OR4E2
2   chr14   21828322       23034402  NM_001005465        OR10G3
3   chr14   21828322       23034402  NM_001005466        OR10G2
4   chr14   21828322       23034402  NM_001163380         RAB2B
5   chr14   21828322       23034402  NM_001170629          CHD8
6   chr14   21828322       23034402  NM_001303523          TOX4
7   chr14   21828322       23034402  NM_001317107         OR4E1
8   chr14   21828322       23034402     NM_001344          DAD1
9   chr14   21828322       23034402     NM_007192       SUPT16H
10  chr14   21828322       23034402     NM_019852        METTL3
13  chr14   21828322       23034402     NR_002916        SNORD8
14  chr14   21828322       23034402     NR_003029        SNORD9
15  chr14   21828322       23034402     NR_111966         SALL2
17  chr14   21930389       22196818  NM_001001912         OR4E2
18  chr14   21930389       22196818  NM_001005465        OR10G3
19  chr14   21930389       22196818  NM_001005466        OR10G2
20  chr14   21930389       22196818  NM_001163380         RAB2B
21  chr14   21930389       22196818  NM_001303523          TOX4
22  chr14   21930389       22196818  NM_001317107         OR4E1
23  chr14   21930389       22196818     NM_019852        METTL3
25  chr14   21930389       22196818     NR_111966         SALL2
27   chr2   35681246       35843563     NR_039629      MIR548AD
28   chr2   51254339       51408952  NM_001330079         NRXN1
31   chr2   51254339       51408952     NR_135237     LOC730100
32   chr4   69239191       69448115     NM_001077       UGT2B17
33   chr4   69239191       69448115     NM_014058     TMPRSS11E
34   chr9   64574187       65915967  NM_001113541     SPATA31A5
35   chr9   64574187       65915967     NM_015667     SPATA31A7
36   chr9   64574187       65915967     NR_026802       FAM74A4
37   chr9   64574187       65915967     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11    7770609        7874273     NM_153444         OR5P2
1  chr11    7770609        7874273     NM_153445         OR5P3
2  chr11    7770609        7874273     NR_027711        OR5E1P
3  chr11    7770609        7874273     NR_036678     LOC283299
4  chr11   48342750       48667286  NM_001004702         OR4C3
5  chr11   48342750       48667286  NM_001005512        OR4A47
6  chr11   48342750       48667286  NM_001005513        OR4C45
7  chr12  128532926      128721143     NR_104647  LOC100996679
8  chr12  128532926      128721143     NR_104648  LOC101927694,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21606296       21912360  NM_001004731     OR5AU1
1   chr14   21606296       21912360  NM_001170629       CHD8
2   chr14   21606296       21912360     NM_007192    SUPT16H
3   chr14   21606296       21912360     NM_020366    RPGRIP1
5   chr14   21606296       21912360     NM_031314     HNRNPC
6   chr14   21606296       21912360     NR_002916     SNORD8
7   chr14   21606296       21912360     NR_003029     SNORD9
8   chr14   21606296       21912360     NR_038970  LINC00641
10  chr15   20638300       20757788  NM_001145004   GOLGA6L6
11  chr15   20638300       20757788     NR_036432    HERC2P3
12  chr17    1137372        1238128  NM_001164405     BHLHA9
13  chr17    1137372        1238128     NM_172367      TUSC5
14   chr2  133796048      133902805     NM_207363     NCKAP5
15   chr4  169242022      169360793  NM_001012967     DDX60L
17   chr6  116547852      117546226  NM_001010892     RSPH4A
18   chr6  116547852      117546226  NM_001085480    FAM162B
19   chr6  116547852      117546226  NM_001139444   TRAPPC3L
20   chr6  116547852      117546226  NM_001276460     FAM26F
21   chr6  116547852      117546226  NM_001286355     GPRC6A
22   chr6  116547852      117546226  NM_001322939        DSE
25   chr6  116547852      117546226     NM_002269      KPNA5
26   chr6  116547852      117546226     NM_003309     TSPYL1
27   chr6  116547852      117546226     NM_015952      RWDD1
28   chr6  116547852      117546226     NM_021648     TSPYL4
29   chr6  116547852      117546226     NM_145062      ZUFSP
30   chr6  116547852      117546226     NM_152729     NT5DC1
31   chr6  116547852      117546226     NM_153036     FAM26D
32   chr6  116547852      117546226     NM_153711     FAM26E
33   chr6  116547852      117546226     NM_173560       RFX6,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   31190048       31386706     NM_181807         DCDC1
1  chr16   18201071       18457532  NM_001282511        NPIPA8
2  chr16   18201071       18457532     NR_103772  LOC100288162
3  chr16   18201071       18457532     NR_106971     MIR6511A4
4   chr9   30233969       30390310     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   14988281       15161965  NM_001270767         NTAN1
1   chr16   14988281       15161965  NM_001285445        PDXDC1
6   chr16   14988281       15161965  NM_001301064          RRN3
8   chr16   14988281       15161965     NM_006985        NPIPA1
9   chr16   14988281       15161965     NM_014287         NOMO1
10  chr16   14988281       15161965     NR_036140     MIR3179-1
11  chr16   14988281       15161965     NR_036141     MIR3180-1
12  chr16   14988281       15161965     NR_036142     MIR3180-2
13  chr16   14988281       15161965     NR_103772  LOC100288162
14  chr16   14988281       15161965     NR_106970     MIR6511A3
15  chr16   14988281       15161965     NR_107060     MIR6770-2
16  chr16   14988281       15161965     NR_128713     MIR3670-4
17   chr7   69081647       69185530  NM_001127231         AUTS2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12714368       12838314  NM_001013630      AADACL4
1    chr1   12714368       12838314  NM_001080830     PRAMEF12
2    chr1   12714368       12838314  NM_001103170      AADACL3
3    chr1   12714368       12838314     NM_152290     C1orf158
4   chr10   81428577       81825549  NM_001278495       NUTM2B
5   chr10   81428577       81825549     NM_003019        SFTPD
6   chr10   81428577       81825549     NR_002724        MBL1P
7   chr10   81428577       81825549     NR_027431  TMEM254-AS1
8   chr10   81428577       81825549     NR_027512      BEND3P3
9   chr10   81428577       81825549     NR_029407    LOC642361
10  chr10   81428577       81825549     NR_033857      BMS1P21
11  chr10   81428577       81825549     NR_120611   NUTM2B-AS1
14  chr20   14794852       15005265     NM_080676      MACROD2
15  chr20   14794852       15005265     NR_037841  MACROD2-AS1
17   chr3  145833866      146199890     NM_000935        PLOD2
18   chr3  145833866      146199890  NM_001128304       PLSCR4
20   chr3  145833866      146199890  NM_001199978       PLSCR2
22   chr6  162731640      162983971     NM_013988        PARK2
23   chr9   39041472       40016838  NM_001085452    SPATA31A1
25   chr9   39041472       40016838     NM_033655      CNTNAP3
26   chr9   39041472       40016838     NR_003528      ZNF658B
27   chr9   39041472       40016838     NR_026803      FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  104215515      104346831  NM_001008218         AMY1B
2    chr1  104215515      104346831  NM_001008219         AMY1C
4    chr1  104215515      104346831  NM_001008221         AMY1A
8    chr1  189961215      191558005  NM_001317188        BRINP3
10   chr1  189961215      191558005     NR_033922     LOC440704
11   chr1  189961215      191558005     NR_110716     LINC01351
13  chr14   21747330       21863822  NM_001170629          CHD8
14  chr14   21747330       21863822     NM_007192       SUPT16H
15  chr14   21747330       21863822     NM_020366       RPGRIP1
17  chr14   21747330       21863822     NR_003029        SNORD9
18   chr7   85976853       87534539     NM_000840          GRM3
19   chr7   85976853       87534539     NM_000927         ABCB1
20   chr7   85976853       87534539  NM_001134405       RUNDC3B
21   chr7   85976853       87534539  NM_001142326         DMTF1
22   chr7   85976853       87534539  NM_001142749     KIAA1324L
23   chr7   85976853       87534539  NM_001243745          CROT
25   chr7   85976853       87534539  NM_001318062          DBF4
26   chr7   85976853       87534539  NM_001329475       TMEM243
27   chr7   85976853       87534539     NM_018843      SLC25A40
28   chr7   85976853       87534539     NM_018850         ABCB4
33   chr7   85976853       87534539     NR_015381       TP53TG1
34   chr7   85976853       87534539     NR_136252  LOC101927420,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   61076137       61879369     NM_001796      CDH8
1  chr16   61076137       61879369     NR_039624   MIR4426
2  chr22   17250184       17546356  NM_001037814      GAB4
3  chr22   17250184       17546356     NM_175878      XKR3
4  chr22   17250184       17546356     NR_003607   HSFY1P1
5  chr22   17250184       17546356     NR_015352     CECR7,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   75994144       76131827  NM_001130058    SLC44A5
4   chr22   19050542       19202022  NM_001184781      DGCR2
5   chr22   19050542       19202022  NM_001256534    SLC25A1
6   chr22   19050542       19202022     NM_001835     CLTCL1
7   chr22   19050542       19202022     NM_005315       GSC2
9   chr22   19050542       19202022     NM_022719     DGCR14
10  chr22   19050542       19202022     NM_053006      TSSK2
11  chr22   19050542       19202022     NR_103767  LINC01311,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21818017       21999773  NM_001163380     RAB2B
1   chr14   21818017       21999773  NM_001170629      CHD8
2   chr14   21818017       21999773  NM_001303523      TOX4
3   chr14   21818017       21999773     NM_007192   SUPT16H
4   chr14   21818017       21999773     NM_019852    METTL3
5   chr14   21818017       21999773     NM_020366   RPGRIP1
8   chr14   21818017       21999773     NR_002916    SNORD8
9   chr14   21818017       21999773     NR_003029    SNORD9
10  chr14   21818017       21999773     NR_111966     SALL2
12   chr6   65530349       65915185  NM_001142800       EYS,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   21777846       21888270  NM_001170629           CHD8
1   chr14   21777846       21888270     NM_007192        SUPT16H
2   chr14   21777846       21888270     NM_020366        RPGRIP1
4   chr14   21777846       21888270     NR_002916         SNORD8
5   chr14   21777846       21888270     NR_003029         SNORD9
6   chr19    9391049        9530005  NM_001172650  ZNF559-ZNF177
7   chr19    9391049        9530005  NM_001172651         ZNF177
8   chr19    9391049        9530005  NM_001202406         ZNF559
11  chr19    9391049        9530005  NM_001271314         ZNF266
13  chr19    9391049        9530005     NM_198535         ZNF699
14  chr21   23066131       23337610     NR_038872      LINC00317
15  chr21   23066131       23337610     NR_109958      LINC01425
16   chr7  125769855      126500051  NM_001127323           GRM8,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143627987      144060218  NM_001123068       PPIAL4G
1    chr1  143627987      144060218  NM_001287385        FAM72C
2    chr1  143627987      144060218  NM_001345942        FAM72D
6    chr1  143627987      144060218     NR_104014     LINC01138
7    chr1  143627987      144060218     NR_106967       MIR6077
8    chr1  143627987      144060218     NR_111930  LOC100132057
10  chr16   16439561       16587278  NM_001282511        NPIPA8
11  chr16   16439561       16587278     NR_036447        PKD1P1
12  chr16   16439561       16587278     NR_106971     MIR6511A4
13  chr22   32464804       32693227     NM_000343        SLC5A1
14  chr22   32464804       32693227  NM_001010859      C22orf42
15  chr22   32464804       32693227  NM_001098527         RFPL2
20  chr22   32464804       32693227     NM_014227        SLC5A4
21  chr22   32464804       32693227     NR_040114       AP1B1P1
22   chr3  193046260      193354131     NM_015560          OPA1
23   chr3  193046260      193354131     NM_032279       ATP13A4
24   chr3  193046260      193354131     NM_198505       ATP13A5
25   chr3  193046260      193354131     NR_046634      OPA1-AS1
26   chr3  193046260      193354131     NR_046726   ATP13A4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12780592       12996480  NM_001009611       PRAMEF4
1    chr1   12780592       12996480  NM_001012276       PRAMEF8
2    chr1   12780592       12996480  NM_001013631      HNRNPCL1
3    chr1   12780592       12996480  NM_001080830      PRAMEF12
4    chr1   12780592       12996480  NM_001103170       AADACL3
5    chr1   12780592       12996480  NM_001146181      HNRNPCL3
6    chr1   12780592       12996480  NM_001146344      PRAMEF11
7    chr1   12780592       12996480  NM_001294139       PRAMEF1
8    chr1   12780592       12996480  NM_001302551      HNRNPCL4
10   chr1   12780592       12996480     NM_023014       PRAMEF2
11   chr1   12780592       12996480     NM_152290      C1orf158
12   chr1  143612537      143878086  NM_001123068       PPIAL4G
13   chr1  143612537      143878086     NR_104014     LINC01138
14   chr1  143612537      143878086     NR_106967       MIR6077
15   chr1  143612537      143878086     NR_111930  LOC100132057
16   chr1  244321840      245643195  NM_001012970      C1orf100
17   chr1  244321840      245643195     NM_001126          ADSS
18   chr1  244321840      245643195  NM_001143943        EFCAB2
19   chr1  244321840      245643195  NM_001242340      C1orf101
21   chr1  244321840      245643195  NM_001297746         DESI2
22   chr1  244321840      245643195  NM_001312871         COX20
24   chr1  244321840      245643195     NM_004501        HNRNPU
25   chr1  244321840      245643195     NM_018012        KIF26B
28   chr1  244321840      245643195     NR_111907  LOC101928068
29   chr1  244321840      245643195     NR_132782      SNORA100
30  chr15  100144116      100613793  NM_001130928         MEF2A
31  chr15  100144116      100613793  NM_001284417        LYSMD4
34  chr15  100144116      100613793     NM_139057      ADAMTS17
35  chr15  100144116      100613793     NR_003260       DNM1P46
36  chr15  100144116      100613793     NR_135737     LOC400464
37  chr16   28702591       28969582  NM_001145795         SH2B1
39  chr16   28702591       28969582  NM_001199142         EIF3C
40  chr16   28702591       28969582  NM_001286075        ATP2A1
42  chr16   28702591       28969582  NM_001287251        NPIPB9
44  chr16   28702591       28969582  NM_001317856        EIF3CL
45  chr16   28702591       28969582     NM_001770          CD19
46  chr16   28702591       28969582     NM_003321          TUFM
49  chr16   28702591       28969582     NM_024816        RABEP2
50  chr16   28702591       28969582     NM_032815      NFATC2IP
51  chr16   28702591       28969582     NM_148416        ATXN2L
52  chr16   28702591       28969582     NR_039872       MIR4721
53  chr16   28702591       28969582     NR_046287    ATP2A1-AS1
54  chr16   28702591       28969582     NR_107058     MIR6862-2
55   chr2   51970657       52196405     NR_135237     LOC730100,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48283790       48396618  NM_001004702      OR4C3
1   chr11   48283790       48396618  NM_001004725      OR4S1
2   chr11   48283790       48396618  NM_001004726      OR4X1
3   chr11   48283790       48396618  NM_001005513     OR4C45
4   chr11   60280031       60390059  NM_001278320     MS4A13
5   chr11   60280031       60390059     NR_026946  LINC00301
6   chr14   21922184       22097608  NM_001005465     OR10G3
7   chr14   21922184       22097608  NM_001163380      RAB2B
8   chr14   21922184       22097608  NM_001303523       TOX4
9   chr14   21922184       22097608     NM_019852     METTL3
11  chr14   21922184       22097608     NR_111966      SALL2
13  chr18   40186416       40292792     NR_046174  LINC00907
14   chr5  119998554      120157032  NM_001300783      PRR16,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21810766       22156435  NM_001001912      OR4E2
1   chr14   21810766       22156435  NM_001005465     OR10G3
2   chr14   21810766       22156435  NM_001005466     OR10G2
3   chr14   21810766       22156435  NM_001163380      RAB2B
4   chr14   21810766       22156435  NM_001170629       CHD8
5   chr14   21810766       22156435  NM_001303523       TOX4
6   chr14   21810766       22156435  NM_001317107      OR4E1
7   chr14   21810766       22156435     NM_007192    SUPT16H
8   chr14   21810766       22156435     NM_019852     METTL3
9   chr14   21810766       22156435     NM_020366    RPGRIP1
12  chr14   21810766       22156435     NR_002916     SNORD8
13  chr14   21810766       22156435     NR_003029     SNORD9
14  chr14   21810766       22156435     NR_111966      SALL2
16  chr19   21630028       21899331  NM_001001415     ZNF429
17  chr19   21630028       21899331     NR_037194  LINC00664
18   chr4    9045255        9353126  NM_001242326   USP17L25
24   chr4    9045255        9353126  NM_001256852   USP17L10
25   chr4    9045255        9353126  NM_001256853   USP17L12
27   chr4    9045255        9353126  NM_001256854   USP17L11
30   chr4    9045255        9353126  NM_001256855   USP17L13
31   chr4    9045255        9353126  NM_001256857   USP17L17
32   chr4    9045255        9353126  NM_001256860   USP17L19
33   chr4    9045255        9353126  NM_001256861   USP17L20
34   chr4    9045255        9353126  NM_001256894   USP17L15,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   53125516       53239040  NM_001098512      PRKG1
2   chr11   60341027       61036482  NM_001079807       PGA3
3   chr11   60341027       61036482  NM_001079808       PGA4
4   chr11   60341027       61036482  NM_001310141     MS4A18
5   chr11   60341027       61036482  NM_001346456        CD5
6   chr11   60341027       61036482     NM_004778     PTGDR2
7   chr11   60341027       61036482     NM_006725        CD6
9   chr11   60341027       61036482     NM_014224       PGA5
10  chr11   60341027       61036482     NM_014502     PRPF19
11  chr11   60341027       61036482     NM_017870   TMEM132A
12  chr11   60341027       61036482     NM_017966     VPS37C
13  chr11   60341027       61036482     NM_024092    TMEM109
14  chr11   60341027       61036482     NM_024098     CCDC86
15  chr11   60341027       61036482     NM_031457      MS4A8
16  chr11   60341027       61036482     NM_152717     MS4A15
17  chr11   60341027       61036482     NM_152718       VWCE
18  chr11   60341027       61036482     NM_206893     MS4A10
19  chr11   60341027       61036482     NM_207341        ZP1
20  chr11   60341027       61036482     NR_026946  LINC00301
21  chr11   60341027       61036482     NR_027391    SLC15A3
22  chr14   21782744       21937996  NM_001163380      RAB2B
23  chr14   21782744       21937996  NM_001170629       CHD8
24  chr14   21782744       21937996     NM_007192    SUPT16H
25  chr14   21782744       21937996     NM_020366    RPGRIP1
28  chr14   21782744       21937996     NR_002916     SNORD8
29  chr14   21782744       21937996     NR_003029     SNORD9
30  chr14   21886463       22023253  NM_001163380      RAB2B
31  chr14   21886463       22023253  NM_001170629       CHD8
32  chr14   21886463       22023253  NM_001303523       TOX4
33  chr14   21886463       22023253     NM_019852     METTL3
36  chr14   21886463       22023253     NR_111966      SALL2
38   chr9   39094081       39591641  NM_001085452  SPATA31A1
39   chr9   39094081       39591641     NM_033655    CNTNAP3
40   chr9   39094081       39591641     NR_003528    ZNF658B
41   chr9   39094081       39591641     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  122019922      122211089     NR_024430   MIR100HG
1   chr11  122019922      122211089     NR_029515     MIR100
8   chr13   85988643       86782831     NM_032229    SLITRK6
9   chr13   85988643       86782831     NR_046989  LINC00351
10  chr14   42147016       42254717  NM_001346175      LRFN5
11  chr22   19021667       19170394  NM_001184781      DGCR2
12  chr22   19021667       19170394  NM_001256534    SLC25A1
13  chr22   19021667       19170394     NM_001835     CLTCL1
14  chr22   19021667       19170394     NM_005315       GSC2
16  chr22   19021667       19170394     NM_022719     DGCR14
17  chr22   19021667       19170394     NM_053006      TSSK2
18  chr22   19021667       19170394     NR_024157     DGCR11
19  chr22   19021667       19170394     NR_103767  LINC01311
20   chr3     309321         445349  NM_001253387       CHL1
22   chr3     309321         445349     NR_110739   CHL1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21877896       23646065  NM_001001912         OR4E2
1   chr14   21877896       23646065  NM_001005465        OR10G3
2   chr14   21877896       23646065  NM_001005466        OR10G2
3   chr14   21877896       23646065  NM_001039619         PRMT5
4   chr14   21877896       23646065  NM_001099780        PSMB11
5   chr14   21877896       23646065  NM_001126105        SLC7A7
7   chr14   21877896       23646065  NM_001130706      C14orf93
8   chr14   21877896       23646065  NM_001130725         PSMB5
10  chr14   21877896       23646065  NM_001163380         RAB2B
11  chr14   21877896       23646065  NM_001164815         ACIN1
13  chr14   21877896       23646065  NM_001170629          CHD8
14  chr14   21877896       23646065  NM_001267036        SLC7A8
17  chr14   21877896       23646065  NM_001289097         AJUBA
18  chr14   21877896       23646065  NM_001303523          TOX4
19  chr14   21877896       23646065  NM_001317107         OR4E1
20  chr14   21877896       23646065  NM_001318870        MRPL52
21  chr14   21877896       23646065  NM_001329226         LRP10
22  chr14   21877896       23646065     NM_001344          DAD1
23  chr14   21877896       23646065     NM_001805         CEBPE
24  chr14   21877896       23646065     NM_004995         MMP14
25  chr14   21877896       23646065     NM_005015         OXA1L
27  chr14   21877896       23646065     NM_017815         HAUS4
28  chr14   21877896       23646065     NM_017924     C14orf119
29  chr14   21877896       23646065     NM_018107         RBM23
30  chr14   21877896       23646065     NM_019852        METTL3
32  chr14   21877896       23646065     NM_022060         ABHD4
33  chr14   21877896       23646065     NM_022478         CDH24
36  chr14   21877896       23646065     NM_173527          REM2
38  chr14   21877896       23646065     NR_039856       MIR4707
40  chr14   21877896       23646065     NR_110002  LOC101926933
41  chr14   21877896       23646065     NR_111966         SALL2
43  chr14   21877896       23646065     NR_120599     PRMT5-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   12788692       13037044  NM_001009611   PRAMEF4
1    chr1   12788692       13037044  NM_001010889   PRAMEF6
2    chr1   12788692       13037044  NM_001010890   PRAMEF9
3    chr1   12788692       13037044  NM_001012276   PRAMEF8
4    chr1   12788692       13037044  NM_001013631  HNRNPCL1
5    chr1   12788692       13037044  NM_001080830  PRAMEF12
6    chr1   12788692       13037044  NM_001099850  PRAMEF18
7    chr1   12788692       13037044  NM_001100631  PRAMEF22
8    chr1   12788692       13037044  NM_001103170   AADACL3
9    chr1   12788692       13037044  NM_001146181  HNRNPCL3
10   chr1   12788692       13037044  NM_001146344  PRAMEF11
11   chr1   12788692       13037044  NM_001294139   PRAMEF1
12   chr1   12788692       13037044  NM_001302551  HNRNPCL4
14   chr1   12788692       13037044     NM_023014   PRAMEF2
15   chr1   12788692       13037044     NM_152290  C1orf158
16  chr10   68110273       68270541  NM_001127384    CTNNA3
18  chr14   21693512       22442412  NM_001001912     OR4E2
19  chr14   21693512       22442412  NM_001005465    OR10G3
20  chr14   21693512       22442412  NM_001005466    OR10G2
21  chr14   21693512       22442412  NM_001163380     RAB2B
22  chr14   21693512       22442412  NM_001170629      CHD8
23  chr14   21693512       22442412  NM_001303523      TOX4
24  chr14   21693512       22442412  NM_001317107     OR4E1
25  chr14   21693512       22442412     NM_007192   SUPT16H
26  chr14   21693512       22442412     NM_019852    METTL3
27  chr14   21693512       22442412     NM_020366   RPGRIP1
29  chr14   21693512       22442412     NM_031314    HNRNPC
31  chr14   21693512       22442412     NR_002916    SNORD8
32  chr14   21693512       22442412     NR_003029    SNORD9
33  chr14   21693512       22442412     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28222036       29845992     NM_000275          OCA2
1   chr15   28222036       29845992  NM_001130414         APBA2
2   chr15   28222036       29845992  NM_001282468       GOLGA8M
4   chr15   28222036       29845992     NM_004667         HERC2
5   chr15   28222036       29845992     NM_015307      FAM189A1
6   chr15   28222036       29845992     NM_138704        NSMCE3
7   chr15   28222036       29845992     NR_026589       WHAMMP2
8   chr15   28222036       29845992     NR_033351       GOLGA8F
10  chr15   28222036       29845992     NR_033353       GOLGA8G
12  chr15   28222036       29845992     NR_036443       HERC2P9
13  chr15   28222036       29845992     NR_036475  LOC100289656
14  chr15   28222036       29845992     NR_037599     PDCD6IPP2
15  chr15   28222036       29845992     NR_039734     MIR4509-3
17  chr15   28222036       29845992     NR_047567     GOLGA6L7P
18  chr19   21505524       21849974  NM_001001415        ZNF429
19  chr19   21505524       21849974  NM_001297560        ZNF708
22  chr19   21505524       21849974     NM_145326        ZNF493
24  chr19   21505524       21849974     NR_027130        ZNF738
25  chr19   21505524       21849974     NR_037194     LINC00664
26   chr8   22947494       25066623  NM_001105541          NEFM
27   chr8   22947494       25066623  NM_001128930        ENTPD4
28   chr8   22947494       25066623  NM_001136108        R3HCC1
29   chr8   22947494       25066623  NM_001136271        NKX2-6
30   chr8   22947494       25066623  NM_001256339        NKX3-1
31   chr8   22947494       25066623  NM_001304351        ADAM28
32   chr8   22947494       25066623  NM_001317899         CHMP7
33   chr8   22947494       25066623  NM_001322810         DOCK5
34   chr8   22947494       25066623     NM_002318         LOXL2
35   chr8   22947494       25066623     NM_003155          STC1
36   chr8   22947494       25066623     NM_003817         ADAM7
37   chr8   22947494       25066623     NM_003840     TNFRSF10D
38   chr8   22947494       25066623     NM_003841     TNFRSF10C
39   chr8   22947494       25066623     NM_003844     TNFRSF10A
41   chr8   22947494       25066623     NM_006158          NEFL
43   chr8   22947494       25066623     NM_014479      ADAMDEC1
44   chr8   22947494       25066623     NM_016612      SLC25A37
48   chr8   22947494       25066623     NR_033928     LOC389641
49   chr8   22947494       25066623     NR_038323  LOC100507156
51   chr8   22947494       25066623     NR_046173     LOC254896
52   chr8   22947494       25066623     NR_106900       MIR6841
53   chr8   22947494       25066623     NR_125808  LOC101929294
54   chr8   22947494       25066623     NR_125809  LOC101929315,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28715652       29128250  NM_001282468       GOLGA8M
1   chr15   28715652       29128250     NR_026589       WHAMMP2
2   chr15   28715652       29128250     NR_033351       GOLGA8F
3   chr15   28715652       29128250     NR_033353       GOLGA8G
4   chr15   28715652       29128250     NR_036443       HERC2P9
5   chr15   28715652       29128250     NR_036475  LOC100289656
6   chr15   28715652       29128250     NR_037599     PDCD6IPP2
7   chr15   28715652       29128250     NR_039734     MIR4509-3
8   chr15   28715652       29128250     NR_047567     GOLGA6L7P
9    chr6  162866120      163036774     NM_013988         PARK2
10   chr8   48494953       48765904  NM_001080394         SPIDR
11   chr8   48494953       48765904     NM_005195         CEBPD
12   chr8   48494953       48765904     NM_006904         PRKDC,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21898962       22025473  NM_001163380     RAB2B
1  chr14   21898962       22025473  NM_001170629      CHD8
2  chr14   21898962       22025473  NM_001303523      TOX4
3  chr14   21898962       22025473     NM_019852    METTL3
6  chr14   21898962       22025473     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12    5072806        5307549     NM_002234      KCNA5
1   chr15   20721646       20823873  NM_001145004   GOLGA6L6
2   chr15   20721646       20823873     NR_027411   GOLGA8CP
3   chr22   19037047       19292113  NM_001184781      DGCR2
4   chr22   19037047       19292113  NM_001256534    SLC25A1
5   chr22   19037047       19292113     NM_001835     CLTCL1
6   chr22   19037047       19292113     NM_005315       GSC2
8   chr22   19037047       19292113     NM_022719     DGCR14
9   chr22   19037047       19292113     NM_053006      TSSK2
10  chr22   19037047       19292113     NR_103767  LINC01311
11   chr8   15309246       15420088     NM_006765      TUSC3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67935350       68136715  NM_001127384     CTNNA3
2   chr16   29527477       29680976  NM_001030288        SPN
4   chr16   29527477       29680976     NR_049833  MIR3680-2
5   chr16   29527477       29680976     NR_135305     SMG1P2
7   chr16   68633508       68814949  NM_001317184       CDH1
8   chr16   68633508       68814949  NM_001317195       CDH3
9   chr16   68633508       68814949     NR_106988  MIR7641-2
10  chr20   14669189       14855040     NM_080676    MACROD2
11   chr7  110614228      110873759  NM_001099658      LRRN3
12   chr7  110614228      110873759  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1   12812826       13101545  NM_001009611        PRAMEF4
1    chr1   12812826       13101545  NM_001010889        PRAMEF6
2    chr1   12812826       13101545  NM_001010890        PRAMEF9
3    chr1   12812826       13101545  NM_001012276        PRAMEF8
4    chr1   12812826       13101545  NM_001013631       HNRNPCL1
5    chr1   12812826       13101545  NM_001080830       PRAMEF12
6    chr1   12812826       13101545  NM_001099850       PRAMEF18
7    chr1   12812826       13101545  NM_001100631       PRAMEF22
8    chr1   12812826       13101545  NM_001146181       HNRNPCL3
9    chr1   12812826       13101545  NM_001146344       PRAMEF11
10   chr1   12812826       13101545  NM_001294139        PRAMEF1
11   chr1   12812826       13101545  NM_001302551       HNRNPCL4
12   chr1   12812826       13101545  NM_001306072       PRAMEF26
13   chr1   12812826       13101545  NM_001310134       PRAMEF25
15   chr1   12812826       13101545     NM_023014        PRAMEF2
16   chr1   12812826       13101545     NM_152290       C1orf158
17  chr16   29467744       29683740  NM_001014999          SLX1A
18  chr16   29467744       29683740  NM_001017390        SULT1A4
19  chr16   29467744       29683740  NM_001030288            SPN
21  chr16   29467744       29683740     NR_002556      LOC388242
22  chr16   29467744       29683740     NR_037608  SLX1A-SULT1A3
23  chr16   29467744       29683740     NR_049833      MIR3680-2
24  chr16   29467744       29683740     NR_135305         SMG1P2
26   chr7  102124637      102299361  NM_001031618         SPDYE2
28   chr7  102124637      102299361  NM_001097615        POLR2J3
29   chr7  102124637      102299361  NM_001114403         UPK3BL
30   chr7  102124637      102299361  NM_001277335         RASA4B
32   chr7  102124637      102299361     NM_006989          RASA4
33   chr7  102124637      102299361     NM_032959        POLR2J2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143660394      143880168  NM_001123068       PPIAL4G
1  chr1  143660394      143880168     NR_104014     LINC01138
2  chr1  143660394      143880168     NR_106967       MIR6077
3  chr1  143660394      143880168     NR_111930  LOC100132057
4  chr1  241714849      241833475     NM_001821          CHML
5  chr1  241714849      241833475     NM_003679           KMO
6  chr1  241714849      241833475     NM_014322          OPN3
7  chr1  241714849      241833475     NM_144625         WDR64
8  chr4   93238935       93351219     NM_001510         GRID2
9  chr7   14862142       15148839     NM_004080          DGKB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67992934       68212550  NM_001127384        CTNNA3
2   chr22   19051448       19390884  NM_001184781         DGCR2
3   chr22   19051448       19390884  NM_001256534       SLC25A1
4   chr22   19051448       19390884     NM_001835        CLTCL1
5   chr22   19051448       19390884     NM_003325          HIRA
6   chr22   19051448       19390884     NM_005315          GSC2
8   chr22   19051448       19390884     NM_022719        DGCR14
9   chr22   19051448       19390884     NM_053006         TSSK2
10  chr22   19051448       19390884     NR_103767     LINC01311
11   chr3   60356325       60524614  NM_001320899          FHIT
12   chr4  169182183      169421714  NM_001012967        DDX60L
13   chr4  169182183      169421714  NM_001166108         PALLD
15   chr4  169182183      169421714     NM_017631         DDX60
16   chr6  161746133      163231318  NM_001080378         PACRG
18   chr6  161746133      163231318     NM_013988         PARK2
19   chr6  161746133      163231318     NR_134594  LOC105378098
20   chr6  162577113      163296270  NM_001080378         PACRG
22   chr6  162577113      163296270     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17261742       19109632  NM_001037814          GAB4
1   chr22   17261742       19109632  NM_001122731        MICAL3
2   chr22   17261742       19109632  NM_001127649         PEX26
4   chr22   17261742       19109632  NM_001163079         CECR6
5   chr22   17261742       19109632  NM_001184781         DGCR2
6   chr22   17261742       19109632  NM_001193414         TUBA8
7   chr22   17261742       19109632  NM_001195226         PRODH
9   chr22   17261742       19109632  NM_001244567           BID
12  chr22   17261742       19109632  NM_001270733       BCL2L13
13  chr22   17261742       19109632  NM_001282227         CECR1
15  chr22   17261742       19109632  NM_001288707  LOC101929372
16  chr22   17261742       19109632  NM_001289905        IL17RA
17  chr22   17261742       19109632  NM_001290046         CECR2
19  chr22   17261742       19109632  NM_001303484      SLC25A18
20  chr22   17261742       19109632     NM_001696      ATP6V1E1
21  chr22   17261742       19109632     NM_005675         DGCR6
25  chr22   17261742       19109632     NM_017414         USP18
26  chr22   17261742       19109632     NM_017829         CECR5
29  chr22   17261742       19109632     NM_175878          XKR3
31  chr22   17261742       19109632     NR_002733         DGCR5
32  chr22   17261742       19109632     NR_003267         GGT3P
33  chr22   17261742       19109632     NR_003607       HSFY1P1
34  chr22   17261742       19109632     NR_015352         CECR7
35  chr22   17261742       19109632     NR_024157        DGCR11
36  chr22   17261742       19109632     NR_024159         DGCR9
37  chr22   17261742       19109632     NR_024417      FLJ41941
38  chr22   17261742       19109632     NR_024482     CECR5-AS1
39  chr22   17261742       19109632     NR_026651        DGCR10
40  chr22   17261742       19109632     NR_030378        MIR648
41  chr22   17261742       19109632     NR_036168     MIR3198-1
42  chr22   17261742       19109632     NR_038398         CECR3
44  chr22   17261742       19109632     NR_103718     LINC00528
45  chr22   17261742       19109632     NR_103793  LOC100996342
47  chr22   17261742       19109632     NR_135922  LOC102725072
48  chr22   17261742       19109632     NR_136561     LOC642643
49  chr22   17261742       19109632     NR_136570  LOC100996415
50  chr22   17261742       19109632     NR_136571  LOC100996432
51  chr22   17261742       19109632     NR_136574  LOC105379550
52   chr3  172098836      172265991  NM_001135095        FNDC3B
53   chr3  172098836      172265991  NM_001190942       TNFSF10
55   chr3  172098836      172265991     NM_004122          GHSR
58   chr9   16748757       16862159     NM_017637          BNC2
59   chr9   31380464       31714923     NR_135134     LINC01243,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr10   68095039       68692446  NM_001127384        CTNNA3
2    chr10   68095039       68692446     NM_178011        LRRTM3
3    chr10   68095039       68692446     NR_111911  LOC101928961
4    chr16   16383013       16486611  NM_001004067         NOMO3
5    chr16   16383013       16486611  NM_001282511        NPIPA8
6    chr16   16383013       16486611     NR_036140     MIR3179-1
7    chr16   16383013       16486611     NR_036141     MIR3180-1
8    chr16   16383013       16486611     NR_036142     MIR3180-2
9    chr16   16383013       16486611     NR_036447        PKD1P1
10   chr16   16383013       16486611     NR_103772  LOC100288162
11   chr16   16383013       16486611     NR_106766     MIR6511A1
12   chr16   16383013       16486611     NR_106971     MIR6511A4
13   chr16   16383013       16486611     NR_107060     MIR6770-2
14   chr16   16383013       16486611     NR_128713     MIR3670-4
15    chr2   78241284       78383328     NR_110287  LOC101927948
16    chr2   78241284       78383328     NR_110288  LOC101927967
17    chr2  234323653      234836997     NM_000463        UGT1A1
18    chr2  234323653      234836997  NM_001001394        DNAJB3
19    chr2  234323653      234836997     NM_001072        UGT1A6
20    chr2  234323653      234836997  NM_001282962         HJURP
21    chr2  234323653      234836997  NM_001287395        MROH2A
22    chr2  234323653      234836997     NM_003648          DGKD
23    chr2  234323653      234836997     NM_007120        UGT1A4
24    chr2  234323653      234836997     NM_018218         USP40
25    chr2  234323653      234836997     NM_019075       UGT1A10
26    chr2  234323653      234836997     NM_019076        UGT1A8
27    chr2  234323653      234836997     NM_019077        UGT1A7
28    chr2  234323653      234836997     NM_019078        UGT1A5
29    chr2  234323653      234836997     NM_019093        UGT1A3
30    chr2  234323653      234836997     NM_021027        UGT1A9
..     ...        ...            ...           ...           ...
61    chr4    9012484       10636440     NM_053042       ZNF518B
62    chr4    9012484       10636440     NR_027279      USP17L6P
63    chr4    9012484       10636440     NR_031688      MIR548I2
64    chr4    9012484       10636440     NR_036090       MIR3138
65    chr4    9012484       10636440     NR_046416      USP17L9P
66    chr5   63798474       65339265  NM_001029875        RGS7BP
67    chr5   63798474       65339265  NM_001093755      TRAPPC13
68    chr5   63798474       65339265  NM_001164442       FAM159B
69    chr5   63798474       65339265  NM_001267038         CENPK
70    chr5   63798474       65339265  NM_001278926         PPWD1
71    chr5   63798474       65339265  NM_001297645         CWC27
75    chr5   63798474       65339265     NM_018695         ERBIN
76    chr5   63798474       65339265     NM_019072          SGTB
77    chr5   63798474       65339265     NM_020726           NLN
78    chr5   63798474       65339265     NM_033228        TRIM23
79    chr5   63798474       65339265     NM_173829      SREK1IP1
81    chr5   63798474       65339265     NR_028474  LOC100303749
83    chr5   63798474       65339265     NR_135689       ADAMTS6
84    chr9   26448187       28004428     NM_000459           TEK
85    chr9   26448187       28004428  NM_001031689          PLAA
86    chr9   26448187       28004428  NM_001099222         IFT74
89    chr9   26448187       28004428  NM_001161585          EQTN
90    chr9   26448187       28004428  NM_001167575         CAAP1
91    chr9   26448187       28004428  NM_001256054       C9orf72
92    chr9   26448187       28004428  NM_001258282        LINGO2
95    chr9   26448187       28004428     NM_020124          IFNK
96    chr9   26448187       28004428     NM_022901        LRRC19
97    chr9   26448187       28004428     NM_024761         MOB3B
101   chr9   26448187       28004428     NR_026679     LINC00032
102   chr9   26448187       28004428     NR_121605     IFT74-AS1

[77 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21770574       22034066  NM_001163380     RAB2B
1   chr14   21770574       22034066  NM_001170629      CHD8
2   chr14   21770574       22034066  NM_001303523      TOX4
3   chr14   21770574       22034066     NM_007192   SUPT16H
4   chr14   21770574       22034066     NM_019852    METTL3
5   chr14   21770574       22034066     NM_020366   RPGRIP1
8   chr14   21770574       22034066     NR_002916    SNORD8
9   chr14   21770574       22034066     NR_003029    SNORD9
10  chr14   21770574       22034066     NR_111966     SALL2
12   chr2   56594239       56812645  NM_001080433   CCDC85A,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  186239189      186387916  NM_001164245    C1orf27
1    chr1  186239189      186387916  NM_001303232       PRG4
2    chr1  186239189      186387916     NM_003292        TPR
3    chr1  186239189      186387916     NM_022375       OCLM
4   chr13   22555333       22981906     NR_103810  LINC00540
5   chr16   29495297       29712516  NM_001030288        SPN
6   chr16   29495297       29712516  NM_001318249       QPRT
8   chr16   29495297       29712516     NR_049833  MIR3680-2
9   chr16   29495297       29712516     NR_135305     SMG1P2
11   chr3   60073325       60262313  NM_001320899       FHIT
12   chr3   72751159       72888546     NM_018130       SHQ1
13   chr8   48489644       48713743  NM_001080394      SPIDR
14   chr8   48489644       48713743     NM_005195      CEBPD
15   chr8   48489644       48713743     NM_006904      PRKDC,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12782257       12997347  NM_001009611       PRAMEF4
1    chr1   12782257       12997347  NM_001012276       PRAMEF8
2    chr1   12782257       12997347  NM_001013631      HNRNPCL1
3    chr1   12782257       12997347  NM_001080830      PRAMEF12
4    chr1   12782257       12997347  NM_001103170       AADACL3
5    chr1   12782257       12997347  NM_001146181      HNRNPCL3
6    chr1   12782257       12997347  NM_001146344      PRAMEF11
7    chr1   12782257       12997347  NM_001294139       PRAMEF1
8    chr1   12782257       12997347  NM_001302551      HNRNPCL4
10   chr1   12782257       12997347     NM_023014       PRAMEF2
11   chr1   12782257       12997347     NM_152290      C1orf158
12   chr1  245030406      245139641  NM_001143943        EFCAB2
15   chr1  245030406      245139641     NR_111907  LOC101928068
16  chr10   67627210       67975073  NM_001127384        CTNNA3
18  chr11    4309527        4512919  NM_001005161        OR52B4
19  chr11    4309527        4512919  NM_001005171        OR52K1
20  chr11    4309527        4512919  NM_001005172        OR52K2
21  chr11    4309527        4512919     NM_003141        TRIM21
22  chr15   99955025      100215366  NM_001130928         MEF2A
24  chr16   18223604       19001525  NM_001004060         NOMO2
25  chr16   18223604       19001525     NM_001019        RPS15A
26  chr16   18223604       19001525  NM_001160364          TMC7
27  chr16   18223604       19001525  NM_001282511        NPIPA8
29  chr16   18223604       19001525  NM_001313858       ARL6IP1
31  chr16   18223604       19001525     NM_015092          SMG1
33  chr16   18223604       19001525     NR_003569       ABCC6P1
34  chr16   18223604       19001525     NR_036140     MIR3179-1
35  chr16   18223604       19001525     NR_036142     MIR3180-2
36  chr16   18223604       19001525     NR_036144     MIR3180-3
37  chr16   18223604       19001525     NR_037442     MIR3670-1
38  chr16   18223604       19001525     NR_103772  LOC100288162
39  chr16   18223604       19001525     NR_106971     MIR6511A4
40  chr16   18223604       19001525     NR_107060     MIR6770-2
41  chr20    5124487        5879562  NM_001303477     C20orf196
43  chr20    5124487        5879562     NM_003818          CDS2
44  chr20    5124487        5879562     NM_019593        GPCPD1
45  chr20    5124487        5879562     NM_144773        PROKR2
46  chr20    5124487        5879562     NR_015406     LINC00654
47  chr20    5124487        5879562     NR_029405     LOC643406
48  chr20    5124487        5879562     NR_038240     LINC00658
49  chr20    5124487        5879562     NR_109860  LOC101929207,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21792728       21922445  NM_001170629         CHD8
1   chr14   21792728       21922445     NM_007192      SUPT16H
2   chr14   21792728       21922445     NM_020366      RPGRIP1
4   chr14   21792728       21922445     NR_002916       SNORD8
5   chr14   21792728       21922445     NR_003029       SNORD9
6   chr20   14876831       15137160     NM_080676      MACROD2
7   chr20   14876831       15137160     NR_037841  MACROD2-AS1
9    chr3    1152807        1403727  NM_001289081        CNTN6
10   chr3  192422587      192585308     NM_004113        FGF12
11   chr3  192422587      192585308     NM_178496       MB21D2
12   chr9   28170441       28276448  NM_001258282       LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143538862      143986833  NM_001123068       PPIAL4G
1    chr1  143538862      143986833  NM_001287385        FAM72C
2    chr1  143538862      143986833  NM_001345942        FAM72D
6    chr1  143538862      143986833     NR_104014     LINC01138
7    chr1  143538862      143986833     NR_106967       MIR6077
8    chr1  143538862      143986833     NR_111930  LOC100132057
10  chr13   80792847       81024930  NM_001318536         SPRY2
13  chr17    3858900        4637948  NM_001001683         MED11
14  chr17    3858900        4637948  NM_001100812        CXCL16
15  chr17    3858900        4637948  NM_001114974        SMTNL2
16  chr17    3858900        4637948  NM_001122890          GGT6
17  chr17    3858900        4637948  NM_001124758         SPNS2
18  chr17    3858900        4637948     NM_001140        ALOX15
19  chr17    3858900        4637948  NM_001254755        CYB5D2
21  chr17    3858900        4637948  NM_001257329         ARRB2
22  chr17    3858900        4637948  NM_001257999        ANKFY1
23  chr17    3858900        4637948  NM_001278241         PELP1
24  chr17    3858900        4637948  NM_001320449         SPNS3
25  chr17    3858900        4637948     NM_003342        UBE2G1
26  chr17    3858900        4637948     NM_014520       MYBBP1A
27  chr17    3858900        4637948     NM_015113         ZZEF1
31  chr17    3858900        4637948     NM_174955        ATP2A3
33  chr17    3858900        4637948     NR_103482  LOC101559451
34  chr17    3858900        4637948     NR_110982  LOC103021295
35  chr18     597673         785046  NM_001012716        TYMSOS
36  chr18     597673         785046     NM_001071          TYMS
37  chr18     597673         785046  NM_001126123        ENOSF1
38  chr18     597673         785046  NM_001289036         CLUL1
42  chr18     597673         785046     NM_005433          YES1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21921363       23368147  NM_001001912         OR4E2
1   chr14   21921363       23368147  NM_001005465        OR10G3
2   chr14   21921363       23368147  NM_001005466        OR10G2
3   chr14   21921363       23368147  NM_001126105        SLC7A7
5   chr14   21921363       23368147  NM_001163380         RAB2B
6   chr14   21921363       23368147  NM_001303523          TOX4
7   chr14   21921363       23368147  NM_001317107         OR4E1
8   chr14   21921363       23368147  NM_001318870        MRPL52
9   chr14   21921363       23368147  NM_001329226         LRP10
10  chr14   21921363       23368147     NM_001344          DAD1
11  chr14   21921363       23368147     NM_004995         MMP14
12  chr14   21921363       23368147     NM_005015         OXA1L
13  chr14   21921363       23368147     NM_019852        METTL3
14  chr14   21921363       23368147     NM_022060         ABHD4
16  chr14   21921363       23368147     NM_173527          REM2
18  chr14   21921363       23368147     NR_111966         SALL2
20  chr15   28503080       30060766  NM_001130414         APBA2
21  chr15   28503080       30060766  NM_001282468       GOLGA8M
22  chr15   28503080       30060766  NM_001301025          TJP1
25  chr15   28503080       30060766     NM_004667         HERC2
26  chr15   28503080       30060766     NM_015307      FAM189A1
27  chr15   28503080       30060766     NM_138704        NSMCE3
28  chr15   28503080       30060766     NR_026589       WHAMMP2
29  chr15   28503080       30060766     NR_033351       GOLGA8F
31  chr15   28503080       30060766     NR_033353       GOLGA8G
33  chr15   28503080       30060766     NR_036443       HERC2P9
34  chr15   28503080       30060766     NR_036475  LOC100289656
35  chr15   28503080       30060766     NR_037599     PDCD6IPP2
36  chr15   28503080       30060766     NR_039734     MIR4509-3
38  chr15   28503080       30060766     NR_047567     GOLGA6L7P
39  chr15   28503080       30060766     NR_135221  LOC100130111
40  chr21   35989429       36149960  NM_001317009         CLIC6
41  chr21   35989429       36149960     NR_024351     LINC00160
42  chr21   35989429       36149960     NR_038885     LINC01426,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28254042       30491378     NM_000275          OCA2
1   chr15   28254042       30491378  NM_001130414         APBA2
2   chr15   28254042       30491378  NM_001282468       GOLGA8M
3   chr15   28254042       30491378  NM_001282472       GOLGA8J
5   chr15   28254042       30491378  NM_001301025          TJP1
8   chr15   28254042       30491378     NM_004667         HERC2
9   chr15   28254042       30491378     NM_015307      FAM189A1
10  chr15   28254042       30491378     NM_138704        NSMCE3
11  chr15   28254042       30491378     NR_026589       WHAMMP2
12  chr15   28254042       30491378     NR_026771  DKFZP434L187
13  chr15   28254042       30491378     NR_026859        ULK4P3
14  chr15   28254042       30491378     NR_033351       GOLGA8F
16  chr15   28254042       30491378     NR_033353       GOLGA8G
18  chr15   28254042       30491378     NR_033933       GOLGA8T
19  chr15   28254042       30491378     NR_036443       HERC2P9
20  chr15   28254042       30491378     NR_036475  LOC100289656
21  chr15   28254042       30491378     NR_037599     PDCD6IPP2
22  chr15   28254042       30491378     NR_039734     MIR4509-3
24  chr15   28254042       30491378     NR_047567     GOLGA6L7P
25  chr15   28254042       30491378     NR_135221  LOC100130111
26  chr15   30260927       30372437  NM_001301025          TJP1
27  chr21   28162274       28308526     NM_006988       ADAMTS1
28  chr21   28162274       28308526     NM_007038       ADAMTS5
29  chr22   20569031       20684248     NR_136569     LOC729461
30  chr22   20569031       20684248     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21845487       21961979  NM_001163380     RAB2B
1   chr14   21845487       21961979  NM_001170629      CHD8
2   chr14   21845487       21961979  NM_001303523      TOX4
3   chr14   21845487       21961979     NM_007192   SUPT16H
6   chr14   21845487       21961979     NR_002916    SNORD8
7   chr14   21845487       21961979     NR_003029    SNORD9
8   chr21   17910919       18065035     NR_027790  MIR99AHG
10  chr21   17910919       18065035     NR_029480  MIRLET7C
11  chr21   17910919       18065035     NR_029514    MIR99A
12  chr21   17910919       18065035     NR_029694  MIR125B2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   63530930       64153387  NM_001039469         MARK2
1   chr11   63530930       64153387  NM_001039496         TEX40
2   chr11   63530930       64153387  NM_001128612        NUDT22
4   chr11   63530930       64153387  NM_001135208         FKBP2
5   chr11   63530930       64153387  NM_001144936      C11orf95
6   chr11   63530930       64153387  NM_001160393         TRPT1
7   chr11   63530930       64153387  NM_001170726        GPR137
10  chr11   63530930       64153387  NM_001243733         VEGFB
11  chr11   63530930       64153387  NM_001282450         ESRRA
12  chr11   63530930       64153387  NM_001282652         STIP1
13  chr11   63530930       64153387  NM_001286082       TRMT112
14  chr11   63530930       64153387  NM_001300800         NAA40
15  chr11   63530930       64153387  NM_001307981        DNAJC4
16  chr11   63530930       64153387  NM_001316314         PLCB3
17  chr11   63530930       64153387  NM_001317090         KCNK4
18  chr11   63530930       64153387  NM_001318361       RPS6KA4
19  chr11   63530930       64153387     NM_004074         COX8A
24  chr11   63530930       64153387     NM_013280         FLRT1
25  chr11   63530930       64153387     NM_014067       MACROD1
29  chr11   63530930       64153387     NM_031471        FERMT3
31  chr11   63530930       64153387     NM_032251       CCDC88B
32  chr11   63530930       64153387     NM_032989           BAD
35  chr11   63530930       64153387     NM_138471      C11orf84
36  chr11   63530930       64153387     NM_138689      PPP1R14B
37  chr11   63530930       64153387     NM_173587         RCOR2
38  chr11   63530930       64153387     NM_181651         PRDX5
39  chr11   63530930       64153387     NR_003089         OTUB1
40  chr11   63530930       64153387     NR_031602       MIR1237
41  chr11   63530930       64153387     NR_106977       MIR7155
44  chr11   63530930       64153387     NR_133662   KCNK4-TEX40
45  chr11   63530930       64153387     NR_135086  LOC105369340
47  chr12  130240488      130374973     NM_133448      TMEM132D
48  chr13   54852340       55356325     NR_031628       MIR1297
49  chr15   77629396       77935584  NM_001301186        LINGO1
58  chr15   77629396       77935584  NM_001304505        HMG20A
59  chr15   77629396       77935584     NM_024776         PEAK1
61  chr15   77629396       77935584     NR_045123    LINGO1-AS1
62  chr15   77629396       77935584     NR_135692  LOC101929457
63   chr2  212991196      213224008  NM_001042599         ERBB4
64   chr7   14849432       15102681     NM_004080          DGKB
66   chr7   29499459       29620600  NM_001293069          CHN2
70   chr7   29499459       29620600  NM_001329997         PRR15
73   chr7   82884521       83072597  NM_001178129        SEMA3E
75   chr7  110693449      110900915  NM_001099658         LRRN3
76   chr7  110693449      110900915  NM_001244606        IMMP2L
78   chr7  110606481      110924360  NM_001099658         LRRN3
79   chr7  110606481      110924360  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   95914616       96026633     NM_032427        MAML2
1   chr14   21912671       22086560  NM_001005465       OR10G3
2   chr14   21912671       22086560  NM_001163380        RAB2B
3   chr14   21912671       22086560  NM_001303523         TOX4
4   chr14   21912671       22086560     NM_019852       METTL3
6   chr14   21912671       22086560     NR_111966        SALL2
8    chr4   69052017       69645461  NM_001031732       YTHDC1
9    chr4   69052017       69645461     NM_001076      UGT2B15
10   chr4   69052017       69645461     NM_001077      UGT2B17
11   chr4   69052017       69645461     NM_014058    TMPRSS11E
12   chr4   69052017       69645461     NM_182502    TMPRSS11B
13   chr4   69052017       69645461     NR_015446       FTLP10
14   chr4   69052017       69645461     NR_104048  TMPRSS11BNL
15   chr8    7860312        7979800     NR_027424       FAM66E
16   chr8    7860312        7979800     NR_031689     MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   37865933       38376483     NR_135110  LOC105376633
1   chr16   18238602       18697556  NM_001004060         NOMO2
2   chr16   18238602       18697556  NM_001282511        NPIPA8
3   chr16   18238602       18697556     NR_003569       ABCC6P1
4   chr16   18238602       18697556     NR_036140     MIR3179-1
5   chr16   18238602       18697556     NR_036142     MIR3180-2
6   chr16   18238602       18697556     NR_036144     MIR3180-3
7   chr16   18238602       18697556     NR_037442     MIR3670-1
8   chr16   18238602       18697556     NR_103772  LOC100288162
9   chr16   18238602       18697556     NR_106971     MIR6511A4
10  chr16   18238602       18697556     NR_107060     MIR6770-2
11  chr19   23471690       26015965  NM_001244038        ZNF726
12  chr19   23471690       26015965  NM_001278661        ZNF254
15  chr19   23471690       26015965  NM_001300951         ZNF91
16  chr19   23471690       26015965     NM_138286        ZNF681
17  chr19   23471690       26015965     NM_138330        ZNF675
18  chr19   23471690       26015965     NR_003603      HAVCR1P1
19  chr19   23471690       26015965     NR_003662       RPSAP58
20  chr19   23471690       26015965     NR_126448     LINC01224
21   chr6  161774136      161930991     NM_013988         PARK2
22   chr6  161774136      161930991     NR_134594  LOC105378098
23   chr8  124999578      125175002  NM_001039112        FER1L6
24   chr8  124999578      125175002     NR_040044    FER1L6-AS1
25   chr8  124999578      125175002     NR_103547    FER1L6-AS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143077059      143290010     NR_110761  LOC102723769
1   chr14   21917315       22180271  NM_001001912         OR4E2
2   chr14   21917315       22180271  NM_001005465        OR10G3
3   chr14   21917315       22180271  NM_001005466        OR10G2
4   chr14   21917315       22180271  NM_001163380         RAB2B
5   chr14   21917315       22180271  NM_001303523          TOX4
6   chr14   21917315       22180271  NM_001317107         OR4E1
7   chr14   21917315       22180271     NM_019852        METTL3
9   chr14   21917315       22180271     NR_111966         SALL2
11  chr19   21896882       23273279  NM_001001411        ZNF676
12  chr19   21896882       23273279  NM_001080409         ZNF99
13  chr19   21896882       23273279  NM_001098626         ZNF98
14  chr19   21896882       23273279  NM_001242680        ZNF729
15  chr19   21896882       23273279  NM_001256650         ZNF43
16  chr19   21896882       23273279  NM_001267716        ZNF728
17  chr19   21896882       23273279  NM_001329971        ZNF208
21  chr19   21896882       23273279     NM_020855        ZNF492
22  chr19   21896882       23273279     NM_033468        ZNF257
23  chr19   21896882       23273279     NM_173531        ZNF100
24  chr19   21896882       23273279     NR_024523     LOC641367
25  chr19   21896882       23273279     NR_033899      GOLGA2P9
26  chr19   21896882       23273279     NR_103470  LOC100996349
27  chr19   21896882       23273279     NR_110427  LOC101929124
28  chr19   21896882       23273279     NR_110663     LINC01233
29  chr19   21896882       23273279     NR_110745  LOC101929144
30  chr19   21896882       23273279     NR_110746  LOC101929164
31  chr19   21896882       23273279     NR_135233     LOC374890
33  chr22   32319392       32515659     NM_000343        SLC5A1
35  chr22   32319392       32515659  NM_001302819      C22orf24
36  chr22   32319392       32515659     NM_003405         YWHAH
38  chr22   32330768       33706075     NM_000343        SLC5A1
39  chr22   32330768       33706075     NM_000362         TIMP3
40  chr22   32330768       33706075  NM_001010859      C22orf42
41  chr22   32330768       33706075  NM_001033024         FBXO7
42  chr22   32330768       33706075  NM_001098527         RFPL2
43  chr22   32330768       33706075  NM_001098535         RFPL3
44  chr22   32330768       33706075  NM_001135774          SYN3
48  chr22   32330768       33706075  NM_001302819      C22orf24
49  chr22   32330768       33706075     NM_003405         YWHAH
51  chr22   32330768       33706075     NM_004737        LARGE1
55  chr22   32330768       33706075     NM_014227        SLC5A4
56  chr22   32330768       33706075     NM_014306          RTCB
59  chr22   32330768       33706075     NM_174932         BPIFC
60  chr22   32330768       33706075     NR_001450        RFPL3S
61  chr22   32330768       33706075     NR_038918     LOC339666
62  chr22   32330768       33706075     NR_040114       AP1B1P1
64  chr22   32330768       33706075     NR_134617  LOC105373006
65   chr9   38955353       39373677  NM_001085452     SPATA31A1
66   chr9   38955353       39373677     NM_033655       CNTNAP3
67   chr9   38955353       39373677     NR_026803       FAM74A1
68   chr9   39042614       39292941     NM_033655       CNTNAP3
69   chr9   44296354       44448871     NR_121564  LOC101927827
70   chr9   44296354       44448871     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   82786936       82916565  NM_001164465     GOLGA6L10
1   chr15   82786936       82916565  NM_001291420      GOLGA6L9
2   chr15   82786936       82916565     NR_026811     GOLGA2P10
3   chr15   82786936       82916565     NR_045529     ADAMTS7P1
4   chr15   82786936       82916565     NR_111943         RPS17
6   chr15   82786936       82916565     NR_111962    GOLGA6L17P
7   chr16   18358799       18604412  NM_001004060         NOMO2
8   chr16   18358799       18604412  NM_001282511        NPIPA8
9   chr16   18358799       18604412     NR_003569       ABCC6P1
10  chr16   18358799       18604412     NR_036140     MIR3179-1
11  chr16   18358799       18604412     NR_036142     MIR3180-2
12  chr16   18358799       18604412     NR_036144     MIR3180-3
13  chr16   18358799       18604412     NR_037442     MIR3670-1
14  chr16   18358799       18604412     NR_103772  LOC100288162
15  chr16   18358799       18604412     NR_106971     MIR6511A4
16  chr16   18358799       18604412     NR_107060     MIR6770-2
17  chr16   70027871       70132374     NR_003610       PDXDC2P
18  chr16   70027871       70132374     NR_036265     MIR1972-2
19   chr3   80454875       81145488     NR_132411     LOC728290
20   chr4    9049320        9332942  NM_001242326      USP17L25
22   chr4    9049320        9332942  NM_001256852      USP17L10
23   chr4    9049320        9332942  NM_001256853      USP17L12
25   chr4    9049320        9332942  NM_001256854      USP17L11
28   chr4    9049320        9332942  NM_001256855      USP17L13
29   chr4    9049320        9332942  NM_001256857      USP17L17
30   chr4    9049320        9332942  NM_001256860      USP17L19
31   chr4    9049320        9332942  NM_001256861      USP17L20
32   chr4    9049320        9332942  NM_001256894      USP17L15
33   chr5  109627189      109881664  NM_001039763       TMEM232
34   chr5  109627189      109881664     NR_031644      MIR548F3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   82241785       82393170  NM_001297704       ADGRL2
2   chr10   88994757       89293367  NM_001178118       MINPP1
4   chr10   88994757       89293367     NR_024397   NUTM2A-AS1
5   chr10   88994757       89293367     NR_029408    LINC00863
6   chr10   88994757       89293367     NR_039825      MIR4678
7   chr10   88994757       89293367     NR_046091    LINC00864
8   chr10   88994757       89293367     NR_075100       NUTM2D
10  chr11   81780782       82250459     NR_120571    MIR4300HG
11  chr15   20924656       21050288  NM_001277303       POTEB2
12  chr15   20924656       21050288     NM_207355       POTEB3
13  chr15   20924656       21050288     NR_027992       NBEAP1
14  chr15   20924656       21050288     NR_036062    MIR3118-2
15  chr20   14780172       15172478     NM_080676      MACROD2
16  chr20   14780172       15172478     NR_037841  MACROD2-AS1
18   chr6  162876047      162994490     NM_013988        PARK2
19   chr9   12033164       19764325     NM_000550        TYRP1
20   chr9   12033164       19764325     NM_001010         RPS6
21   chr9   12033164       19764325  NM_001010887        ACER2
22   chr9   12033164       19764325  NM_001039697       SNAPC3
23   chr9   12033164       19764325  NM_001040272     ADAMTSL1
24   chr9   12033164       19764325  NM_001114395        CNTLN
25   chr9   12033164       19764325  NM_001128217        PSIP1
26   chr9   12033164       19764325  NM_001168339       TTC39B
28   chr9   12033164       19764325  NM_001177704        FREM1
29   chr9   12033164       19764325  NM_001190738         NFIB
30   chr9   12033164       19764325  NM_001261407         MPDZ
31   chr9   12033164       19764325  NM_001270890        HAUS6
32   chr9   12033164       19764325  NM_001271829      C9orf92
35   chr9   12033164       19764325  NM_001287049        SAXO1
39   chr9   12033164       19764325  NM_001330640      DENND4C
40   chr9   12033164       19764325     NM_003026       SH3GL2
41   chr9   12033164       19764325     NM_005454         CER1
43   chr9   12033164       19764325     NM_006570        RRAGA
44   chr9   12033164       19764325     NM_017637         BNC2
47   chr9   12033164       19764325     NM_020344      SLC24A2
51   chr9   12033164       19764325     NM_173550      CCDC171
52   chr9   12033164       19764325     NM_178566      ZDHHC21
53   chr9   12033164       19764325     NM_203403      LURAP1L
54   chr9   12033164       19764325     NR_003009      SCARNA8
55   chr9   12033164       19764325     NR_003920    LOC389705
56   chr9   12033164       19764325     NR_033863     FLJ41200
57   chr9   12033164       19764325     NR_036107      MIR3152
58   chr9   12033164       19764325     NR_038064        PLIN2
59   chr9   12033164       19764325     NR_038194    LINC00583
61   chr9   12033164       19764325     NR_125775  LURAP1L-AS1
62   chr9   12033164       19764325     NR_132976     SNORD137,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81508237       81631361     NR_029407   LOC642361
1   chr10   81508237       81631361     NR_120611  NUTM2B-AS1
4    chr3  101126850      101404244     NM_000986       RPL24
5    chr3  101126850      101404244  NM_001282803       SENP7
7    chr3  101126850      101404244  NM_001320399        PCNP
8    chr3  101126850      101404244     NM_014415      ZBTB11
9    chr3  101126850      101404244     NM_017819     TRMT10C
10   chr3  101126850      101404244     NR_024407  ZBTB11-AS1
11   chr3  101126850      101404244     NR_036433    FAM172BP
12   chr4   69321297       69453248     NM_001077     UGT2B17
13   chr4   69321297       69453248     NM_014058   TMPRSS11E,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr11   48402176       48548691  NM_001005512     OR4A47
1  chr13   54464157       54766898     NR_108062  LINC00458
3  chr13   63145105       63368410     NR_047029  LINC00448
6  chr20    8096074        8432970     NM_015192      PLCB1
7  chr20    8096074        8432970     NR_046809  PLCB1-IT1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145107367      145222962  NM_001277444         NBPF9
1    chr1  145107367      145222962  NM_001278267        NBPF20
2    chr1  145107367      145222962     NM_004892        SEC22B
3    chr1  145107367      145222962     NM_203458      NOTCH2NL
4   chr13   54415019       54575389     NR_047488     LINC00558
5   chr14   21727347       22955689  NM_001001912         OR4E2
6   chr14   21727347       22955689  NM_001005465        OR10G3
7   chr14   21727347       22955689  NM_001005466        OR10G2
8   chr14   21727347       22955689  NM_001163380         RAB2B
9   chr14   21727347       22955689  NM_001170629          CHD8
10  chr14   21727347       22955689  NM_001303523          TOX4
11  chr14   21727347       22955689  NM_001317107         OR4E1
12  chr14   21727347       22955689     NM_007192       SUPT16H
13  chr14   21727347       22955689     NM_019852        METTL3
14  chr14   21727347       22955689     NM_020366       RPGRIP1
16  chr14   21727347       22955689     NM_031314        HNRNPC
18  chr14   21727347       22955689     NR_002916        SNORD8
19  chr14   21727347       22955689     NR_003029        SNORD9
20  chr14   21727347       22955689     NR_111966         SALL2
22   chr2   97483896       97596197  NM_001122646       FAM178B
24   chr2   97483896       97596197     NM_016466       ANKRD39
26   chr2   97483896       97596197     NM_017623         CNNM3
27   chr2   97483896       97596197     NM_017789        SEMA4C
28   chr2   97483896       97596197     NM_144994       ANKRD23
29   chr2   97483896       97596197     NR_110209  LOC101927053
30   chr7   88240366       88538967     NM_152706       C7orf62
31   chr7   88240366       88538967     NM_181646       ZNF804B
32   chr9     212479         328318  NM_001190458         DOCK8
33   chr9     212479         328318     NM_152569       C9orf66
35   chr9   67224646       67478008     NR_002817        AQP7P1
36   chr9   67224646       67478008     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21845052       22088056  NM_001005465        OR10G3
1   chr14   21845052       22088056  NM_001163380         RAB2B
2   chr14   21845052       22088056  NM_001170629          CHD8
3   chr14   21845052       22088056  NM_001303523          TOX4
4   chr14   21845052       22088056     NM_007192       SUPT16H
5   chr14   21845052       22088056     NM_019852        METTL3
8   chr14   21845052       22088056     NR_002916        SNORD8
9   chr14   21845052       22088056     NR_003029        SNORD9
10  chr14   21845052       22088056     NR_111966         SALL2
12  chr14   37972534       38122108  NM_001195296        MIPOL1
13  chr14   37972534       38122108  NM_001310135          TTC6
14  chr14   37972534       38122108     NM_004496         FOXA1
15   chr2   95988082       96102892  NM_001034914        KCNIP3
17   chr2   95988082       96102892     NM_016044        FAHD2A
18   chr5  161127262      161417138     NM_000806        GABRA1
19   chr5  161127262      161417138     NM_000811        GABRA6
24   chr5  161127262      161417138     NR_126372     LINC01202
25   chr6  140795152      141346274     NR_039675       MIR4465
26   chr7     118043         319460     NM_020223        FAM20C
27   chr7     118043         319460     NR_108065  LOC100507642
28   chr7     118043         319460     NR_134324  LOC105375115
29   chr7     118043         319460     NR_134325  LOC102723672,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12820947       12972474  NM_001009611       PRAMEF4
1    chr1   12820947       12972474  NM_001013631      HNRNPCL1
2    chr1   12820947       12972474  NM_001080830      PRAMEF12
3    chr1   12820947       12972474  NM_001146181      HNRNPCL3
4    chr1   12820947       12972474  NM_001146344      PRAMEF11
5    chr1   12820947       12972474  NM_001294139       PRAMEF1
6    chr1   12820947       12972474  NM_001302551      HNRNPCL4
8    chr1   12820947       12972474     NM_023014       PRAMEF2
9    chr1   12820947       12972474     NM_152290      C1orf158
10  chr15   28637882       29636256  NM_001130414         APBA2
11  chr15   28637882       29636256  NM_001282468       GOLGA8M
12  chr15   28637882       29636256     NM_015307      FAM189A1
13  chr15   28637882       29636256     NM_138704        NSMCE3
14  chr15   28637882       29636256     NR_026589       WHAMMP2
15  chr15   28637882       29636256     NR_033351       GOLGA8F
16  chr15   28637882       29636256     NR_033353       GOLGA8G
17  chr15   28637882       29636256     NR_036443       HERC2P9
18  chr15   28637882       29636256     NR_036475  LOC100289656
19  chr15   28637882       29636256     NR_037599     PDCD6IPP2
20  chr15   28637882       29636256     NR_039734     MIR4509-3
22  chr15   28637882       29636256     NR_047567     GOLGA6L7P
23   chr2   26573923       26690017     NM_004802          OTOF
24   chr2   26573923       26690017     NM_033505       SELENOI
25   chr2   26573923       26690017     NM_145038          DRC1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   60276407       60381304  NM_001278320        MS4A13
1   chr15   28703711       28806421     NR_033351       GOLGA8F
2   chr15   28703711       28806421     NR_033353       GOLGA8G
3   chr15   28703711       28806421     NR_039734     MIR4509-3
4   chr16   14966230       15076563  NM_001285445        PDXDC1
10  chr16   14966230       15076563     NM_006985        NPIPA1
11  chr16   14966230       15076563     NM_014287         NOMO1
12  chr16   14966230       15076563     NR_036140     MIR3179-1
13  chr16   14966230       15076563     NR_036141     MIR3180-1
14  chr16   14966230       15076563     NR_036142     MIR3180-2
15  chr16   14966230       15076563     NR_103772  LOC100288162
16  chr16   14966230       15076563     NR_106970     MIR6511A3
17  chr16   14966230       15076563     NR_107060     MIR6770-2
18  chr16   14966230       15076563     NR_128713     MIR3670-4
19  chr22   17187246       18371061  NM_001037814          GAB4
20  chr22   17187246       18371061  NM_001122731        MICAL3
22  chr22   17187246       18371061  NM_001163079         CECR6
23  chr22   17187246       18371061  NM_001244567           BID
26  chr22   17187246       18371061  NM_001270733       BCL2L13
27  chr22   17187246       18371061  NM_001282227         CECR1
29  chr22   17187246       18371061  NM_001288707  LOC101929372
30  chr22   17187246       18371061  NM_001289905        IL17RA
31  chr22   17187246       18371061  NM_001290046         CECR2
33  chr22   17187246       18371061  NM_001303484      SLC25A18
34  chr22   17187246       18371061     NM_001696      ATP6V1E1
37  chr22   17187246       18371061     NM_017829         CECR5
40  chr22   17187246       18371061     NM_175878          XKR3
42  chr22   17187246       18371061     NR_003607       HSFY1P1
43  chr22   17187246       18371061     NR_015352         CECR7
44  chr22   17187246       18371061     NR_024482     CECR5-AS1
45  chr22   17187246       18371061     NR_036168     MIR3198-1
46  chr22   17187246       18371061     NR_038398         CECR3
48  chr22   17187246       18371061     NR_103718     LINC00528
49  chr22   17187246       18371061     NR_103793  LOC100996342
50  chr22   17187246       18371061     NR_134584  LOC101929350
51  chr22   20083571       20224362  NM_001190326         DGCR8
52  chr22   20083571       20224362  NM_001243537       CCDC188
53  chr22   20083571       20224362  NM_001278639        RANBP1
56  chr22   20083571       20224362     NM_013373        ZDHHC8
57  chr22   20083571       20224362     NM_022727        TRMT2A
58  chr22   20083571       20224362     NR_026919     LINC00896
59  chr22   20083571       20224362     NR_038460     LOC284865
60  chr22   20083571       20224362     NR_106874       MIR6816
61   chr9   11772302       12756689     NM_000550         TYRP1
62   chr9   11772302       12756689     NR_125775   LURAP1L-AS1
63   chr9   39034035       39378489  NM_001085452     SPATA31A1
64   chr9   39034035       39378489     NM_033655       CNTNAP3
65   chr9   39034035       39378489     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67639651       67976547  NM_001127384     CTNNA3
2   chr14   21763651       21928539  NM_001163380      RAB2B
3   chr14   21763651       21928539  NM_001170629       CHD8
4   chr14   21763651       21928539     NM_007192    SUPT16H
5   chr14   21763651       21928539     NM_020366    RPGRIP1
8   chr14   21763651       21928539     NR_002916     SNORD8
9   chr14   21763651       21928539     NR_003029     SNORD9
10   chr2  110132677      110290288  NM_001099289     SH3RF3
11   chr4   56356530       57674329  NM_001024924      EXOC1
12   chr4   56356530       57674329  NM_001079524      PAICS
13   chr4   56356530       57674329  NM_001145459       HOPX
15   chr4   56356530       57674329  NM_001256475      THEGL
16   chr4   56356530       57674329  NM_001267843      CLOCK
17   chr4   56356530       57674329  NM_001286668      AASDH
19   chr4   56356530       57674329     NM_002703       PPAT
22   chr4   56356530       57674329     NM_006681        NMU
23   chr4   56356530       57674329     NM_006947      SRP72
24   chr4   56356530       57674329     NM_020722   KIAA1211
25   chr4   56356530       57674329     NM_025009     CEP135
26   chr4   56356530       57674329     NM_152401      PDCL2
27   chr4   56356530       57674329     NM_206919       ARL9
28   chr4   56356530       57674329     NR_003935  LOC644145
29   chr4   56356530       57674329     NR_106988  MIR7641-2
31   chr7    4273863        4494167  NM_001079653       SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67971327       68264432  NM_001127384        CTNNA3
2   chr13   95299942       95455951     NM_007084         SOX21
3   chr13   95299942       95455951     NR_046514     SOX21-AS1
4   chr13   95299942       95455951     NR_110754  LOC101927284
5   chr13   95299942       95455951     NR_120417  LOC101927248
6   chr14   21776305       21902041  NM_001170629          CHD8
7   chr14   21776305       21902041     NM_007192       SUPT16H
8   chr14   21776305       21902041     NM_020366       RPGRIP1
10  chr14   21776305       21902041     NR_002916        SNORD8
11  chr14   21776305       21902041     NR_003029        SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143739997      147267087  NM_001002810       PDE4DIP
3    chr1  143739997      147267087  NM_001012758        NUDT17
4    chr1  143739997      147267087  NM_001039888      ANKRD34A
5    chr1  143739997      147267087  NM_001097612        GPR89A
6    chr1  143739997      147267087  NM_001101663        NBPF11
7    chr1  143739997      147267087  NM_001123068       PPIAL4G
8    chr1  143739997      147267087  NM_001135789       PPIAL4C
9    chr1  143739997      147267087  NM_001144829          FMO5
10   chr1  143739997      147267087  NM_001184795        PEX11B
15   chr1  143739997      147267087  NM_001201325         PDZK1
16   chr1  143739997      147267087  NM_001256336         CHD1L
17   chr1  143739997      147267087  NM_001277444         NBPF9
18   chr1  143739997      147267087  NM_001278141        NBPF12
19   chr1  143739997      147267087  NM_001278267        NBPF20
20   chr1  143739997      147267087  NM_001280799       ANKRD35
21   chr1  143739997      147267087  NM_001287385        FAM72C
22   chr1  143739997      147267087  NM_001302371        NBPF10
23   chr1  143739997      147267087  NM_001303040        ITGA10
24   chr1  143739997      147267087  NM_001303456        POLR3C
25   chr1  143739997      147267087  NM_001313972         TXNIP
26   chr1  143739997      147267087  NM_001345942        FAM72D
31   chr1  143739997      147267087     NM_004326          BCL9
32   chr1  143739997      147267087     NM_004892        SEC22B
33   chr1  143739997      147267087     NM_005105         RBM8A
34   chr1  143739997      147267087     NM_005266          GJA5
35   chr1  143739997      147267087     NM_005399        PRKAB2
36   chr1  143739997      147267087     NM_006099         PIAS3
39   chr1  143739997      147267087     NM_007053         CD160
40   chr1  143739997      147267087     NM_014455        RNF115
41   chr1  143739997      147267087     NM_016361          ACP6
..    ...        ...            ...           ...           ...
45   chr1  143739997      147267087     NM_153713         LIX1L
47   chr1  143739997      147267087     NM_203458      NOTCH2NL
49   chr1  143739997      147267087     NR_002305       PDIA3P1
50   chr1  143739997      147267087     NR_002328        GNRHR2
51   chr1  143739997      147267087     NR_003242        PFN1P2
52   chr1  143739997      147267087     NR_024442     LOC728989
53   chr1  143739997      147267087     NR_024511     LINC00623
55   chr1  143739997      147267087     NR_038423     LINC00624
57   chr1  143739997      147267087     NR_102405         NBPF8
58   chr1  143739997      147267087     NR_103466       NBPF13P
59   chr1  143739997      147267087     NR_104014     LINC01138
62   chr1  143739997      147267087     NR_104217       NBPF25P
64   chr1  143739997      147267087     NR_106794       MIR6736
66   chr1  143739997      147267087     NR_111936       PDZK1P1
67   chr1  143739997      147267087     NR_111953     LINC00869
68   chr1  143739997      147267087     NR_121645       RNVU1-8
69   chr1  143739997      147267087     NR_125967  LOC101928979
70   chr1  143739997      147267087     NR_135559  LOC100505824
73  chr13   63141723       63420362     NR_047029     LINC00448
76   chr2  133722766      133897763     NM_207363        NCKAP5
77   chr7   64036465       64467420  NM_001007253        ERV3-1
78   chr7   64036465       64467420  NM_001160183        ZNF138
79   chr7   64036465       64467420  NM_001282360        ZNF107
80   chr7   64036465       64467420     NM_015852        ZNF117
81   chr7   64036465       64467420     NM_021148        ZNF273
82   chr7   64036465       64467420     NR_033245     LOC641746
84   chr7   64036465       64467420     NR_077227  LOC100128885
86   chr7   64036465       64467420     NR_106898       MIR6839
87   chr9   80052283       80163299     NM_004297         GNA14
88   chr9   80052283       80163299     NR_121184     GNA14-AS1

[62 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37422631       37529908     NM_052997      ANKRD30A
1   chr14   21671203       22094045  NM_001005465        OR10G3
2   chr14   21671203       22094045  NM_001163380         RAB2B
3   chr14   21671203       22094045  NM_001170629          CHD8
4   chr14   21671203       22094045  NM_001303523          TOX4
5   chr14   21671203       22094045     NM_007192       SUPT16H
6   chr14   21671203       22094045     NM_019852        METTL3
7   chr14   21671203       22094045     NM_020366       RPGRIP1
9   chr14   21671203       22094045     NM_031314        HNRNPC
11  chr14   21671203       22094045     NR_002916        SNORD8
12  chr14   21671203       22094045     NR_003029        SNORD9
13  chr14   21671203       22094045     NR_038970     LINC00641
15  chr14   21671203       22094045     NR_111966         SALL2
17  chr14   21875663       21976930  NM_001163380         RAB2B
18  chr14   21875663       21976930  NM_001170629          CHD8
19  chr14   21875663       21976930  NM_001303523          TOX4
20  chr14   21875663       21976930     NM_019852        METTL3
23  chr14   42221134       42527322  NM_001346175         LRFN5
24   chr3  192408525      192914226     NM_004113         FGF12
25   chr3  192408525      192914226     NM_178496        MB21D2
26   chr6  162592716      162832247     NM_013988         PARK2
27   chr7  124909897      125034620     NR_110188  LOC101928283,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   28641397       29076020  NM_001282468       GOLGA8M
1  chr15   28641397       29076020     NR_026589       WHAMMP2
2  chr15   28641397       29076020     NR_033351       GOLGA8F
3  chr15   28641397       29076020     NR_033353       GOLGA8G
4  chr15   28641397       29076020     NR_036443       HERC2P9
5  chr15   28641397       29076020     NR_036475  LOC100289656
6  chr15   28641397       29076020     NR_037599     PDCD6IPP2
7  chr15   28641397       29076020     NR_039734     MIR4509-3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4174676        4376541     NR_047550  LOC100506082
1   chr16   18266635       18563982  NM_001004060         NOMO2
2   chr16   18266635       18563982  NM_001282511        NPIPA8
3   chr16   18266635       18563982     NR_036140     MIR3179-1
4   chr16   18266635       18563982     NR_036142     MIR3180-2
5   chr16   18266635       18563982     NR_036144     MIR3180-3
6   chr16   18266635       18563982     NR_037442     MIR3670-1
7   chr16   18266635       18563982     NR_103772  LOC100288162
8   chr16   18266635       18563982     NR_106971     MIR6511A4
9   chr16   18266635       18563982     NR_107060     MIR6770-2
10   chr7   64047062       64173260  NM_001282360        ZNF107
11   chr7   64047062       64173260     NR_077227  LOC100128885
13   chr7   64047062       64173260     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21830210       21941722  NM_001163380         RAB2B
1   chr14   21830210       21941722  NM_001170629          CHD8
2   chr14   21830210       21941722     NM_007192       SUPT16H
5   chr14   21830210       21941722     NR_002916        SNORD8
6   chr14   21830210       21941722     NR_003029        SNORD9
7   chr16    9188358        9444799     NM_014117      C16orf72
8    chr2   52039912       52171400     NR_135237     LOC730100
9    chr7      69185         186666     NR_108065  LOC100507642
10   chr7      69185         186666     NR_134324  LOC105375115
11   chr7      69185         186666     NR_134325  LOC102723672
12   chr7  102121730      102580684  NM_001031618        SPDYE2
14   chr7  102121730      102580684  NM_001031692        LRRC17
15   chr7  102121730      102580684  NM_001097615       POLR2J3
16   chr7  102121730      102580684  NM_001114403        UPK3BL
17   chr7  102121730      102580684  NM_001277335        RASA4B
19   chr7  102121730      102580684  NM_001287150        FBXL13
20   chr7  102121730      102580684     NM_006989         RASA4
21   chr7  102121730      102580684     NM_032959       POLR2J2
23   chr7  102121730      102580684     NR_026879       FAM185A
24   chr9   38857929       39436603  NM_001085452     SPATA31A1
25   chr9   38857929       39436603     NM_033655       CNTNAP3
26   chr9   38857929       39436603     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   14748325       15145297  NM_001270767         NTAN1
1   chr16   14748325       15145297  NM_001277323        NPIPA3
3   chr16   14748325       15145297  NM_001277324        NPIPA2
5   chr16   14748325       15145297  NM_001285445        PDXDC1
11  chr16   14748325       15145297     NM_006985        NPIPA1
12  chr16   14748325       15145297     NM_014287         NOMO1
13  chr16   14748325       15145297     NM_016561          BFAR
14  chr16   14748325       15145297     NR_023387       ABCC6P2
15  chr16   14748325       15145297     NR_036140     MIR3179-1
16  chr16   14748325       15145297     NR_036141     MIR3180-1
17  chr16   14748325       15145297     NR_036142     MIR3180-2
18  chr16   14748325       15145297     NR_103772  LOC100288162
19  chr16   14748325       15145297     NR_106970     MIR6511A3
20  chr16   14748325       15145297     NR_107060     MIR6770-2
21  chr16   14748325       15145297     NR_128713     MIR3670-4
22  chr16   14748325       15145297     NR_133651       PLA2G10
23  chr16   76784589       77537942  NM_001129979        SYCE1L
24  chr16   76784589       77537942  NM_001286639         MON1B
25  chr16   76784589       77537942  NM_001326358      ADAMTS18
26  chr16   76784589       77537942     NR_039870       MIR4719,    chrom  cnv_start  cnv_terminate       tx_name          gene_name
0  chr22   17069720       17485709  NM_001037814               GAB4
1  chr22   17069720       17485709     NM_014406             CCT8L2
2  chr22   17069720       17485709     NM_175878               XKR3
3  chr22   17069720       17485709     NR_001591             TPTEP1
4  chr22   17069720       17485709     NR_003607            HSFY1P1
5  chr22   17069720       17485709     NR_040115  ANKRD62P1-PARP4P3
6  chr22   17069720       17485709     NR_134584       LOC101929350
7   chr6  144704715      145010470     NM_007124               UTRN
8   chr6  144704715      145010470     NR_132778            SNORA98,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14821903       15002045     NM_080676      MACROD2
1  chr20   14821903       15002045     NR_037841  MACROD2-AS1
3   chr3    1178279        1284985  NM_001289081        CNTN6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21656266       21823421     NM_007192       SUPT16H
1   chr14   21656266       21823421     NM_020366       RPGRIP1
2   chr14   21656266       21823421     NM_031314        HNRNPC
3   chr14   21656266       21823421     NR_038970     LINC00641
5   chr14   81657138       82078595  NM_001244984         SEL1L
6   chr14   81657138       82078595  NM_001256430         STON2
7   chr14   81657138       82078595  NM_001278940        GTF2A1
11  chr14   81657138       82078595     NR_003021       SNORA79
12  chr14   81657138       82078595     NR_109999  LOC100506700
13  chr14   81657138       82078595     NR_110074     LINC01467
14  chr14   81657138       82078595     NR_135252  LOC101928504
15  chr19   10272566       10404991     NM_000201         ICAM1
16  chr19   10272566       10404991  NM_001318730         DNMT1
18  chr19   10272566       10404991     NM_001544         ICAM4
19  chr19   10272566       10404991     NM_003259         ICAM5
20  chr19   10272566       10404991     NM_004230         S1PR2
21  chr19   10272566       10404991     NM_015956         MRPL4
23  chr19   10272566       10404991     NR_036206       MIR4322
24  chr19   24274048       24508439  NM_001278661        ZNF254
27  chr19   24274048       24508439     NR_003603      HAVCR1P1
28   chr6   93115800       94276293  NM_001288629         EPHA7
30   chr9    9870971       10227963     NM_002839         PTPRD,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr22   19935699       20221492     NM_000754       COMT
3   chr22   19935699       20221492  NM_001190326      DGCR8
4   chr22   19935699       20221492  NM_001243537    CCDC188
5   chr22   19935699       20221492  NM_001278639     RANBP1
8   chr22   19935699       20221492  NM_001283116     TANGO2
11  chr22   19935699       20221492     NM_001670      ARVCF
13  chr22   19935699       20221492     NM_013373     ZDHHC8
14  chr22   19935699       20221492     NM_022727     TRMT2A
15  chr22   19935699       20221492     NR_026919  LINC00896
16  chr22   19935699       20221492     NR_029706     MIR185
17  chr22   19935699       20221492     NR_031706    MIR1306
18  chr22   19935699       20221492     NR_037412    MIR3618
19  chr22   19935699       20221492     NR_038460  LOC284865
20  chr22   19935699       20221492     NR_039918    MIR4761
21  chr22   19935699       20221492     NR_106874    MIR6816
22   chr7  110745012      110919700  NM_001099658      LRRN3
23   chr7  110745012      110919700  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143128270      143228292     NR_110761  LOC102723769
1   chr10   68023297       68151188  NM_001127384        CTNNA3
3   chr14   81703182       81815537  NM_001256430         STON2
5   chr15   20322904       20638982     NR_036432       HERC2P3
6   chr15   20322904       20638982     NR_038836       CHEK2P2
7   chr16   18334956       18480715  NM_001282511        NPIPA8
8   chr16   18334956       18480715     NR_103772  LOC100288162
9   chr16   18334956       18480715     NR_106971     MIR6511A4
10  chr16   18334956       18480715     NR_107060     MIR6770-2
11   chr5   95310456       95413616     NR_130776  LOC101929710
12   chr5  142448638      142621918  NM_001135608      ARHGAP26
13   chr5  142448638      142621918     NR_046816  ARHGAP26-IT1
14   chr7  102160645      102347530  NM_001031618        SPDYE2
16   chr7  102160645      102347530  NM_001097615       POLR2J3
17   chr7  102160645      102347530  NM_001114403        UPK3BL
18   chr7  102160645      102347530  NM_001277335        RASA4B
19   chr7  102160645      102347530     NM_006989         RASA4
20   chr7  102160645      102347530     NM_032959       POLR2J2
21   chr9   30387027       30514253     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143630610      143821777  NM_001123068       PPIAL4G
1    chr1  143630610      143821777     NR_104014     LINC01138
2    chr1  143630610      143821777     NR_106967       MIR6077
3    chr1  143630610      143821777     NR_111930  LOC100132057
4    chr1  244958854      245090712  NM_001312871         COX20
6    chr1  244958854      245090712     NM_004501        HNRNPU
8    chr1  244958854      245090712     NR_132782      SNORA100
9   chr13   63149320       63584446     NR_047029     LINC00448
12  chr13   86319380       86445547     NM_032229       SLITRK6
13  chr15   28648264       28895221     NR_033351       GOLGA8F
14  chr15   28648264       28895221     NR_033353       GOLGA8G
15  chr15   28648264       28895221     NR_039734     MIR4509-3
17  chr16   16382900       16527792  NM_001004067         NOMO3
18  chr16   16382900       16527792  NM_001282511        NPIPA8
19  chr16   16382900       16527792     NR_036140     MIR3179-1
20  chr16   16382900       16527792     NR_036141     MIR3180-1
21  chr16   16382900       16527792     NR_036142     MIR3180-2
22  chr16   16382900       16527792     NR_036447        PKD1P1
23  chr16   16382900       16527792     NR_103772  LOC100288162
24  chr16   16382900       16527792     NR_106766     MIR6511A1
25  chr16   16382900       16527792     NR_106971     MIR6511A4
26  chr16   16382900       16527792     NR_107060     MIR6770-2
27  chr16   16382900       16527792     NR_128713     MIR3670-4
28  chr16   21710698       21850370  NM_001161683          OTOA
29  chr16   21710698       21850370  NM_001310148        NPIPB4
32  chr16   21710698       21850370     NR_003370        RRN3P1
33  chr20   14684439       15227729  NM_001033087       MACROD2
35  chr20   14684439       15227729     NR_037841   MACROD2-AS1
37   chr3  131247603      131429064  NM_001289112         CPNE4
40   chr7    5562928        7682057     NM_000535          PMS2
..    ...        ...            ...           ...           ...
48   chr7    5562928        7682057  NM_001145118       GRID2IP
49   chr7    5562928        7682057  NM_001271700       ANKRD61
50   chr7    5562928        7682057  NM_001278559        ZNF316
51   chr7    5562928        7682057  NM_001302350         UMAD1
52   chr7    5562928        7682057  NM_001303039       C7orf26
54   chr7    5562928        7682057  NM_001326610         AIMP2
56   chr7    5562928        7682057     NM_002947          RPA3
57   chr7    5562928        7682057     NM_003088         FSCN1
58   chr7    5562928        7682057     NM_004227         CYTH3
59   chr7    5562928        7682057     NM_006854        KDELR2
60   chr7    5562928        7682057     NM_006908          RAC1
61   chr7    5562928        7682057     NM_006956         ZNF12
62   chr7    5562928        7682057     NM_014413       EIF2AK1
63   chr7    5562928        7682057     NM_015622          CCZ1
64   chr7    5562928        7682057     NM_017560        ZNF853
65   chr7    5562928        7682057     NM_018106        ZDHHC4
66   chr7    5562928        7682057     NM_019005          MIOS
67   chr7    5562928        7682057     NM_020156       C1GALT1
68   chr7    5562928        7682057     NM_032172         USP42
69   chr7    5562928        7682057     NM_198097         CCZ1B
70   chr7    5562928        7682057     NM_207116        RNF216
71   chr7    5562928        7682057     NR_002217        PMS2CL
72   chr7    5562928        7682057     NR_023382       ZNF815P
73   chr7    5562928        7682057     NR_034022  LOC100131257
74   chr7    5562928        7682057     NR_037454       MIR3683
75   chr7    5562928        7682057     NR_046834    RNF216-IT1
76   chr7    5562928        7682057     NR_106934       MIR6874
77   chr7    5562928        7682057     NR_108073  LOC101927354
78   chr7    5562928        7682057     NR_110084  LOC101927391
79   chr7    5562928        7682057     NR_126168     LOC221946

[66 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr12  130288928      130428089     NM_133448  TMEM132D
1  chr14   21942656       22187043  NM_001001912     OR4E2
2  chr14   21942656       22187043  NM_001005465    OR10G3
3  chr14   21942656       22187043  NM_001005466    OR10G2
4  chr14   21942656       22187043  NM_001163380     RAB2B
5  chr14   21942656       22187043  NM_001303523      TOX4
6  chr14   21942656       22187043  NM_001317107     OR4E1
7  chr14   21942656       22187043     NM_019852    METTL3
9  chr14   21942656       22187043     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21818115       21947744  NM_001163380     RAB2B
1   chr14   21818115       21947744  NM_001170629      CHD8
2   chr14   21818115       21947744  NM_001303523      TOX4
3   chr14   21818115       21947744     NM_007192   SUPT16H
4   chr14   21818115       21947744     NM_020366   RPGRIP1
7   chr14   21818115       21947744     NR_002916    SNORD8
8   chr14   21818115       21947744     NR_003029    SNORD9
9   chr14   21904877       23242666  NM_001001912     OR4E2
10  chr14   21904877       23242666  NM_001005465    OR10G3
11  chr14   21904877       23242666  NM_001005466    OR10G2
12  chr14   21904877       23242666  NM_001126105    SLC7A7
14  chr14   21904877       23242666  NM_001163380     RAB2B
15  chr14   21904877       23242666  NM_001303523      TOX4
16  chr14   21904877       23242666  NM_001317107     OR4E1
17  chr14   21904877       23242666     NM_001344      DAD1
18  chr14   21904877       23242666     NM_005015     OXA1L
19  chr14   21904877       23242666     NM_019852    METTL3
20  chr14   21904877       23242666     NM_020920      CHD8
21  chr14   21904877       23242666     NM_022060     ABHD4
24  chr14   21904877       23242666     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21751420       22065531  NM_001005465    OR10G3
1   chr14   21751420       22065531  NM_001163380     RAB2B
2   chr14   21751420       22065531  NM_001170629      CHD8
3   chr14   21751420       22065531  NM_001303523      TOX4
4   chr14   21751420       22065531     NM_007192   SUPT16H
5   chr14   21751420       22065531     NM_019852    METTL3
6   chr14   21751420       22065531     NM_020366   RPGRIP1
9   chr14   21751420       22065531     NR_002916    SNORD8
10  chr14   21751420       22065531     NR_003029    SNORD9
11  chr14   21751420       22065531     NR_111966     SALL2
13   chr7   21363519       21602982  NM_001277115    DNAH11
14   chr7   21363519       21602982  NM_001326542       SP4
15   chr7   21363519       21602982     NR_031594   MIR1183
17   chr8    7867630        8118618     NR_024361  FAM86B3P
20   chr8    7867630        8118618     NR_031689  MIR548I3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr13   40324043       40475570  NM_001145079      COG6
2  chr14   21906160       22136159  NM_001001912     OR4E2
3  chr14   21906160       22136159  NM_001005465    OR10G3
4  chr14   21906160       22136159  NM_001005466    OR10G2
5  chr14   21906160       22136159  NM_001163380     RAB2B
6  chr14   21906160       22136159  NM_001303523      TOX4
7  chr14   21906160       22136159     NM_019852    METTL3
9  chr14   21906160       22136159     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21763423       21871369  NM_001170629          CHD8
1   chr14   21763423       21871369     NM_007192       SUPT16H
2   chr14   21763423       21871369     NM_020366       RPGRIP1
4   chr14   21763423       21871369     NR_002916        SNORD8
5   chr14   21763423       21871369     NR_003029        SNORD9
6   chr20   14696431       15499663  NM_001033087       MACROD2
8   chr20   14696431       15499663     NR_037841   MACROD2-AS1
10   chr4   69293100       71530436     NM_000200          HTN3
11   chr4   69293100       71530436  NM_001009181         STATH
12   chr4   69293100       71530436     NM_001073       UGT2B11
13   chr4   69293100       71530436     NM_001075       UGT2B10
15   chr4   69293100       71530436     NM_001076       UGT2B15
16   chr4   69293100       71530436     NM_001077       UGT2B17
17   chr4   69293100       71530436  NM_001105677        UGT2A2
18   chr4   69293100       71530436  NM_001145006          MUC7
20   chr4   69293100       71530436  NM_001207004       UGT2B28
21   chr4   69293100       71530436  NM_001252274        UGT2A1
22   chr4   69293100       71530436  NM_001286731          AMTN
23   chr4   69293100       71530436  NM_001297615        UGT2B4
26   chr4   69293100       71530436  NM_001302770          CSN2
27   chr4   69293100       71530436  NM_001302807         OPRPN
28   chr4   69293100       71530436  NM_001330719        UGT2B7
29   chr4   69293100       71530436     NM_001890        CSN1S1
30   chr4   69293100       71530436     NM_002159          HTN1
31   chr4   69293100       71530436     NM_005212          CSN3
32   chr4   69293100       71530436     NM_005420       SULT1E1
33   chr4   69293100       71530436     NM_006685         SMR3B
34   chr4   69293100       71530436     NM_012390         SMR3A
35   chr4   69293100       71530436     NM_014058     TMPRSS11E
36   chr4   69293100       71530436     NM_014465       SULT1B1
37   chr4   69293100       71530436     NM_016519          AMBN
38   chr4   69293100       71530436     NM_017855          ODAM
39   chr4   69293100       71530436     NM_024743        UGT2A3
40   chr4   69293100       71530436     NM_031889          ENAM
41   chr4   69293100       71530436     NM_033122         CABS1
42   chr4   69293100       71530436     NM_144646        JCHAIN
44   chr4   69293100       71530436     NM_152997         FDCSP
45   chr4   69293100       71530436     NM_214711         PRR27
46   chr4   69293100       71530436     NR_003720      CSN1S2AP
47   chr4   69293100       71530436     NR_033311      CSN1S2BP
48   chr4   69293100       71530436     NR_136191  LOC105377267
49   chr5   85225608       86346265     NM_001867         COX7C
50   chr5   85225608       86346265     NR_003719       NBPF22P
51   chr5   85225608       86346265     NR_037402       MIR3607
52   chr5   85225608       86346265     NR_105017  LOC100505878,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81461963       81680438  NM_001278495        NUTM2B
1   chr10   81461963       81680438     NR_002724         MBL1P
2   chr10   81461963       81680438     NR_029407     LOC642361
3   chr10   81461963       81680438     NR_033857       BMS1P21
4   chr10   81461963       81680438     NR_120611    NUTM2B-AS1
7   chr11    6752406        6912342  NM_001004460        OR10A2
8   chr11    6752406        6912342  NM_001004489        OR2AG1
9   chr11    6752406        6912342  NM_001004490        OR2AG2
10  chr11    6752406        6912342     NM_003696         OR6A2
11  chr11    6752406        6912342     NM_178168        OR10A5
12  chr11    6752406        6912342     NM_207186        OR10A4
13  chr16   68600218       68701590  NM_001305204         ZFP90
15  chr16   68600218       68701590  NM_001317195          CDH3
16  chr20   14741541       15067200     NM_080676       MACROD2
17  chr20   14741541       15067200     NR_037841   MACROD2-AS1
19  chr21   29406558       29561810     NR_126010     LOC284825
21  chr21   29406558       29561810     NR_126012  LOC101927973
22   chr4  184427004      184531594  NM_001291959          ING2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21690299       21819739     NM_007192   SUPT16H
1  chr14   21690299       21819739     NM_020366   RPGRIP1
2  chr14   21690299       21819739     NM_031314    HNRNPC
3   chr7  110611072      110818538  NM_001099658     LRRN3
4   chr7  110611072      110818538  NM_001244606    IMMP2L
6   chr9   28231854       28461516  NM_001258282    LINGO2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  215806670      216092838     NM_206933        USH2A
1   chr12   72698238       72803931     NM_013381        TRHDE
2   chr19   21443126       21649999  NM_001297560       ZNF708
5   chr19   21443126       21649999     NM_145326       ZNF493
7   chr19   21443126       21649999     NR_027130       ZNF738
8    chr2  112425229      112930860  NM_001128165        FBLN7
9    chr2  112425229      112930860     NM_006343        MERTK
10   chr2  112425229      112930860     NM_022662       ANAPC1
11   chr2  112425229      112930860     NM_032824      TMEM87B
12   chr2  112425229      112930860     NR_039929    MIR4771-2
13  chr20   14712636       14885916     NM_080676      MACROD2
14  chr20   14712636       14885916     NR_037841  MACROD2-AS1
16  chr20   14748006       15610663  NM_001033087      MACROD2
18  chr20   14748006       15610663     NR_037841  MACROD2-AS1
20  chr20   14740428       15041999     NM_080676      MACROD2
21  chr20   14740428       15041999     NR_037841  MACROD2-AS1
23   chr4   69297611       69400192     NM_014058    TMPRSS11E
24   chr4   94209360       94411806     NM_001510        GRID2
25   chr9   28736807       28849232  NM_001258282       LINGO2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11    4292255        4690474  NM_001004137       OR52M1
1   chr11    4292255        4690474  NM_001004751       OR51D1
2   chr11    4292255        4690474  NM_001005161       OR52B4
3   chr11    4292255        4690474  NM_001005169       OR52I1
4   chr11    4292255        4690474  NM_001005170       OR52I2
5   chr11    4292255        4690474  NM_001005171       OR52K1
6   chr11    4292255        4690474  NM_001005172       OR52K2
7   chr11    4292255        4690474     NM_003141       TRIM21
8   chr11    4292255        4690474     NM_018073       TRIM68
9   chr11    4292255        4690474     NM_144663     C11orf40
10  chr11    4292255        4690474     NM_152430       OR51E1
11  chr15   21093400       21204910     NR_028506        NF1P2
12  chr15   21093400       21204910     NR_040094    LINC01193
13  chr15   21093400       21204910     NR_049895    MIR5701-2
14  chr20   14839277       15197031  NM_001033087      MACROD2
16  chr20   14839277       15197031     NR_037841  MACROD2-AS1
18   chr4   91167099       91439437  NM_001145065       CCSER1
20   chr4  169175416      169342525  NM_001012967       DDX60L
22   chr4  169175416      169342525     NM_017631        DDX60
23   chr7  110632658      110784043  NM_001099658        LRRN3
24   chr7  110632658      110784043  NM_001244606       IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12    5071915        5217344     NM_002234         KCNA5
1  chr13   95339675       95541491     NM_007084         SOX21
2  chr13   95339675       95541491     NR_046514     SOX21-AS1
3  chr13   95339675       95541491     NR_110754  LOC101927284
4  chr13   95339675       95541491     NR_120417  LOC101927248
5   chr4   94084240       94210402     NM_001510         GRID2
6   chr9   41456633       41768440  NM_001113541     SPATA31A5
7   chr9   41456633       41768440     NM_015667     SPATA31A7
8   chr9   41456633       41768440     NR_003528       ZNF658B
9   chr9   41456633       41768440     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  162805013      162940322     NM_178550       CCDC190
1   chr15   28544505       29158998  NM_001282468       GOLGA8M
2   chr15   28544505       29158998     NM_004667         HERC2
3   chr15   28544505       29158998     NR_026589       WHAMMP2
4   chr15   28544505       29158998     NR_033351       GOLGA8F
6   chr15   28544505       29158998     NR_033353       GOLGA8G
8   chr15   28544505       29158998     NR_036443       HERC2P9
9   chr15   28544505       29158998     NR_036475  LOC100289656
10  chr15   28544505       29158998     NR_037599     PDCD6IPP2
11  chr15   28544505       29158998     NR_039734     MIR4509-3
13  chr15   28544505       29158998     NR_047567     GOLGA6L7P
14   chr7   64199545       64342008  NM_001160183        ZNF138
16   chr9   26473614       26881491  NM_001167575         CAAP1
17   chr9  101847630      102132052     NM_004612        TGFBR1
18   chr9  101847630      102132052     NM_006808        SEC61B
19   chr9  101847630      102132052     NM_033087          ALG2
20   chr9  101847630      102132052     NR_102270          NAMA,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27626905       27733346  NM_001034842        PTCHD3
1   chr15   28782102       29455946  NM_001130414         APBA2
2   chr15   28782102       29455946  NM_001282468       GOLGA8M
3   chr15   28782102       29455946     NM_015307      FAM189A1
4   chr15   28782102       29455946     NR_026589       WHAMMP2
5   chr15   28782102       29455946     NR_036443       HERC2P9
6   chr15   28782102       29455946     NR_036475  LOC100289656
7   chr15   28782102       29455946     NR_037599     PDCD6IPP2
8   chr15   28782102       29455946     NR_047567     GOLGA6L7P
9    chr7      68434         198063     NM_020223        FAM20C
10   chr7      68434         198063     NR_108065  LOC100507642
11   chr7      68434         198063     NR_134324  LOC105375115
12   chr7      68434         198063     NR_134325  LOC102723672
13   chr7  133232551      133467236     NM_021807         EXOC4
14   chr8  103999792      104493000  NM_001164615          FZD6
15   chr8  103999792      104493000  NM_001256099        CTHRC1
16   chr8  103999792      104493000     NM_001695      ATP6V1C1
18   chr8  103999792      104493000     NM_015420        DCAF13
19   chr8  103999792      104493000     NM_024812         BAALC
20   chr8  103999792      104493000     NM_030780      SLC25A32
22   chr8  103999792      104493000     NR_027071     BAALC-AS2
23   chr8  103999792      104493000     NR_036106       MIR3151
24   chr8  103999792      104493000     NR_109954     BAALC-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30266756       30748500  NM_001282472       GOLGA8J
1   chr15   30266756       30748500  NM_001282484       GOLGA8R
2   chr15   30266756       30748500     NM_139320      CHRFAM7A
3   chr15   30266756       30748500     NR_026771  DKFZP434L187
4   chr15   30266756       30748500     NR_026859        ULK4P3
5   chr15   30266756       30748500     NR_033933       GOLGA8T
6   chr20   14796832       14897151     NM_080676       MACROD2
7   chr20   14796832       14897151     NR_037841   MACROD2-AS1
9    chr7  109583872      109727391     NR_003024       EIF3IP1
10   chr7  133254842      133457357     NM_021807         EXOC4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12773365       13698590  NM_001009611       PRAMEF4
1    chr1   12773365       13698590  NM_001010889       PRAMEF6
3    chr1   12773365       13698590  NM_001010890       PRAMEF9
4    chr1   12773365       13698590  NM_001012276       PRAMEF8
7    chr1   12773365       13698590  NM_001013407       PRAMEF5
9    chr1   12773365       13698590  NM_001013631      HNRNPCL1
10   chr1   12773365       13698590  NM_001024661      PRAMEF14
12   chr1   12773365       13698590  NM_001039361      PRAMEF10
14   chr1   12773365       13698590  NM_001080830      PRAMEF12
15   chr1   12773365       13698590  NM_001098376      PRAMEF15
17   chr1   12773365       13698590  NM_001099790      PRAMEF19
19   chr1   12773365       13698590  NM_001099850      PRAMEF18
21   chr1   12773365       13698590  NM_001099851      PRAMEF17
22   chr1   12773365       13698590  NM_001099852      PRAMEF20
23   chr1   12773365       13698590  NM_001100631      PRAMEF22
25   chr1   12773365       13698590  NM_001103170       AADACL3
26   chr1   12773365       13698590  NM_001136561      HNRNPCL2
27   chr1   12773365       13698590  NM_001146181      HNRNPCL3
28   chr1   12773365       13698590  NM_001146344      PRAMEF11
29   chr1   12773365       13698590  NM_001291381     PRAMEF33P
31   chr1   12773365       13698590  NM_001294139       PRAMEF1
32   chr1   12773365       13698590  NM_001300891      PRAMEF27
35   chr1   12773365       13698590  NM_001302551      HNRNPCL4
36   chr1   12773365       13698590  NM_001306072      PRAMEF26
37   chr1   12773365       13698590  NM_001310134      PRAMEF25
39   chr1   12773365       13698590     NM_023014       PRAMEF2
40   chr1   12773365       13698590     NM_152290      C1orf158
41   chr1   12773365       13698590     NR_111945     PRAMEF36P
43   chr1   49635717       49780595  NM_001323575         AGBL4
44   chr1   49635717       49780595     NR_125988  LOC101929721
45   chr1  143388758      143791574  NM_001123068       PPIAL4G
46   chr1  143388758      143791574     NR_104014     LINC01138
47   chr1  143388758      143791574     NR_106967       MIR6077
48   chr1  143388758      143791574     NR_111930  LOC100132057
49  chr14   21764667       21891734  NM_001170629          CHD8
50  chr14   21764667       21891734     NM_007192       SUPT16H
51  chr14   21764667       21891734     NM_020366       RPGRIP1
53  chr14   21764667       21891734     NR_002916        SNORD8
54  chr14   21764667       21891734     NR_003029        SNORD9
55   chr7  110606596      110853487  NM_001099658         LRRN3
56   chr7  110606596      110853487  NM_001244606        IMMP2L
58   chr9   38971330       39383072  NM_001085452     SPATA31A1
59   chr9   38971330       39383072     NM_033655       CNTNAP3
60   chr9   38971330       39383072     NR_026803       FAM74A1
61   chr9   67079349       67381442     NR_002817        AQP7P1
62   chr9   67079349       67381442     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  100688351      100833024  NM_001166244      HPSE2
1   chr14   21720814       21936140  NM_001163380      RAB2B
2   chr14   21720814       21936140  NM_001170629       CHD8
3   chr14   21720814       21936140     NM_007192    SUPT16H
4   chr14   21720814       21936140     NM_020366    RPGRIP1
6   chr14   21720814       21936140     NM_031314     HNRNPC
8   chr14   21720814       21936140     NR_002916     SNORD8
9   chr14   21720814       21936140     NR_003029     SNORD9
10   chr9   30365964       32212358     NR_046204  LINC01242
11   chr9   30365964       32212358     NR_135134  LINC01243,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4543100        4698571  NM_001004137        OR52M1
1   chr11    4543100        4698571  NM_001004751        OR51D1
2   chr11    4543100        4698571  NM_001005169        OR52I1
3   chr11    4543100        4698571  NM_001005170        OR52I2
4   chr11    4543100        4698571     NM_018073        TRIM68
5   chr11    4543100        4698571     NM_144663      C11orf40
6   chr11    4543100        4698571     NM_152430        OR51E1
7   chr21   23020845       23252896     NR_038872     LINC00317
8   chr21   23020845       23252896     NR_109958     LINC01425
9   chr22   17248290       18058571  NM_001037814          GAB4
10  chr22   17248290       18058571  NM_001163079         CECR6
11  chr22   17248290       18058571  NM_001282227         CECR1
13  chr22   17248290       18058571  NM_001289905        IL17RA
14  chr22   17248290       18058571  NM_001290046         CECR2
16  chr22   17248290       18058571  NM_001303484      SLC25A18
17  chr22   17248290       18058571     NM_017829         CECR5
20  chr22   17248290       18058571     NM_175878          XKR3
22  chr22   17248290       18058571     NR_003607       HSFY1P1
23  chr22   17248290       18058571     NR_015352         CECR7
24  chr22   17248290       18058571     NR_024482     CECR5-AS1
25  chr22   17248290       18058571     NR_038398         CECR3
26  chr22   17248290       18058571     NR_103793  LOC100996342,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  142515552      142708952     NR_046228  ANKRD20A12P
1   chr10    6754911        6997461     NR_038291    LINC00707
2   chr10    6754911        6997461     NR_108074    LINC00706
3   chr10    6754911        6997461     NR_138480        LINP1
4   chr21   17883977       18073829     NR_027790     MIR99AHG
6   chr21   17883977       18073829     NR_029480     MIRLET7C
7   chr21   17883977       18073829     NR_029514       MIR99A
8   chr21   17883977       18073829     NR_029694     MIR125B2
17  chr22   19028080       19209836  NM_001184781        DGCR2
18  chr22   19028080       19209836  NM_001256534      SLC25A1
19  chr22   19028080       19209836     NM_001835       CLTCL1
20  chr22   19028080       19209836     NM_005315         GSC2
22  chr22   19028080       19209836     NM_022719       DGCR14
23  chr22   19028080       19209836     NM_053006        TSSK2
24  chr22   19028080       19209836     NR_024157       DGCR11
25  chr22   19028080       19209836     NR_103767    LINC01311,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2  186593741      186860170     NM_173651         FSIP2
1    chr2  186593741      186860170     NR_110214  LOC101927196
4    chr2  186593741      186860170     NR_144453     FSIP2-AS1
6   chr20   14854380       15000139     NM_080676       MACROD2
7   chr20   14854380       15000139     NR_037841   MACROD2-AS1
9    chr4   71350606       71606416  NM_001037442         RUFY3
11   chr4   71350606       71606416  NM_001286731          AMTN
15   chr4   71350606       71606416     NM_016519          AMBN
16   chr4   71350606       71606416     NM_020368          UTP3
17   chr4   71350606       71606416     NM_031889          ENAM
18   chr4   71350606       71606416     NM_144646        JCHAIN
19   chr7    2705494        2983217  NM_001282440         GNA12
21   chr7    2705494        2983217  NM_001284355          AMZ1
24   chr7    2705494        2983217  NM_001324281        CARD11,      chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr15   41707462       41867174  NM_001330264          TYRO3
1    chr15   41707462       41867174     NM_002220          ITPKA
3    chr15   41707462       41867174     NM_015138           RTF1
4    chr15   41707462       41867174     NM_015540          RPAP1
5    chr15   41707462       41867174     NM_206961            LTK
6    chr15   52800766       52971420  NM_001142495          MYO5A
7    chr15   52800766       52971420  NM_001286495        FAM214A
8    chr15   52800766       52971420  NM_001306191         ARPP19
13   chr15   59978286       60379484  NM_001320674          BNIP2
15   chr15   59978286       60379484     NM_012182          FOXB1
16   chr16   29688851       37420012     NM_000034          ALDOA
17   chr16   29688851       37420012     NM_000294          PHKG2
18   chr16   29688851       37420012     NM_000632          ITGAM
19   chr16   29688851       37420012     NM_000887          ITGAX
20   chr16   29688851       37420012  NM_001008274         TRIM72
21   chr16   29688851       37420012  NM_001014979        CCDC189
22   chr16   29688851       37420012  NM_001014999          SLX1A
23   chr16   29688851       37420012  NM_001017390        SULT1A4
24   chr16   29688851       37420012  NM_001024683         ZNF688
25   chr16   29688851       37420012  NM_001031827          BOLA2
26   chr16   29688851       37420012  NM_001039503         PRSS53
27   chr16   29688851       37420012  NM_001040056          MAPK3
28   chr16   29688851       37420012  NM_001042454        TGFB1I1
29   chr16   29688851       37420012  NM_001080417         ZNF629
30   chr16   29688851       37420012  NM_001083613        TMEM219
31   chr16   29688851       37420012  NM_001099784         FBXL19
32   chr16   29688851       37420012  NM_001105079           FBRS
33   chr16   29688851       37420012  NM_001105247          ARMC5
34   chr16   29688851       37420012  NM_001109659       C16orf92
36   chr16   29688851       37420012  NM_001114099         SEZ6L2
..     ...        ...            ...           ...            ...
144  chr16   29688851       37420012     NR_002453         SMG1P5
145  chr16   29688851       37420012     NR_002454      LOC606724
146  chr16   29688851       37420012     NR_002556      LOC388242
147  chr16   29688851       37420012     NR_002837        UBE2MP1
148  chr16   29688851       37420012     NR_002966        SNORA30
149  chr16   29688851       37420012     NR_003083       SLC6A10P
150  chr16   29688851       37420012     NR_015396      CDIPT-AS1
151  chr16   29688851       37420012     NR_024034         CLUHP3
152  chr16   29688851       37420012     NR_024348     FBXL19-AS1
154  chr16   29688851       37420012     NR_026980         FRG2DP
155  chr16   29688851       37420012     NR_027011         YBX3P1
156  chr16   29688851       37420012     NR_027079      LINC01566
158  chr16   29688851       37420012     NR_031576         MIR762
159  chr16   29688851       37420012     NR_033866      LOC390705
161  chr16   29688851       37420012     NR_033985       FLJ26245
162  chr16   29688851       37420012     NR_034018      TP53TG3HP
163  chr16   29688851       37420012     NR_037608  SLX1A-SULT1A3
164  chr16   29688851       37420012     NR_038368      LINC00273
165  chr16   29688851       37420012     NR_039743        MIR4518
166  chr16   29688851       37420012     NR_039744        MIR4519
169  chr16   29688851       37420012     NR_102400     PYCARD-AS1
171  chr16   29688851       37420012     NR_109773        HERC2P4
172  chr16   29688851       37420012     NR_110886        TP53TG3
175  chr16   29688851       37420012     NR_110940       MIR762HG
176  chr16   29688851       37420012     NR_130771       ENPP7P13
179  chr16   29688851       37420012     NR_135055         FRG2KP
180  chr16   29688851       37420012     NR_135178   LOC102723753
181  chr16   29688851       37420012     NR_135192   LOC101928595
183   chr6   92020434       93039315     NR_039786        MIR4643
184   chr6   92020434       93039315     NR_104154          CASC6

[130 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88974950       90500649  NM_001010939        LIPJ
1   chr10   88974950       90500649  NM_001031709        RNLS
2   chr10   88974950       90500649  NM_001080518        LIPK
3   chr10   88974950       90500649  NM_001099338      NUTM2A
4   chr10   88974950       90500649  NM_001126049        KLLN
5   chr10   88974950       90500649  NM_001178118      MINPP1
6   chr10   88974950       90500649  NM_001198828        LIPF
7   chr10   88974950       90500649  NM_001304718        PTEN
8   chr10   88974950       90500649  NM_001321968       ATAD1
9   chr10   88974950       90500649     NM_004670      PAPSS2
12  chr10   88974950       90500649     NR_024397  NUTM2A-AS1
13  chr10   88974950       90500649     NR_028492      CFL1P1
14  chr10   88974950       90500649     NR_029408   LINC00863
15  chr10   88974950       90500649     NR_039825     MIR4678
16  chr10   88974950       90500649     NR_046091   LINC00864
17  chr10   88974950       90500649     NR_075100      NUTM2D
19  chr12   27168270       27286718  NM_001080406    C12orf71
20  chr12   27168270       27286718  NM_001271811       MED21
21  chr14   21696376       22821808  NM_001001912       OR4E2
22  chr14   21696376       22821808  NM_001005465      OR10G3
23  chr14   21696376       22821808  NM_001005466      OR10G2
24  chr14   21696376       22821808  NM_001163380       RAB2B
25  chr14   21696376       22821808  NM_001170629        CHD8
26  chr14   21696376       22821808  NM_001303523        TOX4
27  chr14   21696376       22821808  NM_001317107       OR4E1
28  chr14   21696376       22821808     NM_007192     SUPT16H
29  chr14   21696376       22821808     NM_019852      METTL3
30  chr14   21696376       22821808     NM_020366     RPGRIP1
32  chr14   21696376       22821808     NM_031314      HNRNPC
34  chr14   21696376       22821808     NR_002916      SNORD8
35  chr14   21696376       22821808     NR_003029      SNORD9
36  chr14   21696376       22821808     NR_111966       SALL2
38  chr15   98230589       98339304     NR_024172   LINC00923
39   chr3   37776059       37889249     NM_002207       ITGA9
40   chr3   37776059       37889249     NR_110531   ITGA9-AS1
42   chr4   69155869       69557232  NM_001031732      YTHDC1
43   chr4   69155869       69557232     NM_001076     UGT2B15
44   chr4   69155869       69557232     NM_001077     UGT2B17
45   chr4   69155869       69557232     NM_014058   TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   22357405       22518454     NR_047040     LINC00424
1   chr13   25239788       25436446  NM_001184993         RNF17
2   chr13   25239788       25436446  NM_001185085        ATP12A
3   chr15   28806805       30124604  NM_001130414         APBA2
4   chr15   28806805       30124604  NM_001282468       GOLGA8M
5   chr15   28806805       30124604  NM_001301025          TJP1
8   chr15   28806805       30124604     NM_015307      FAM189A1
9   chr15   28806805       30124604     NM_138704        NSMCE3
10  chr15   28806805       30124604     NR_026589       WHAMMP2
11  chr15   28806805       30124604     NR_036443       HERC2P9
12  chr15   28806805       30124604     NR_036475  LOC100289656
13  chr15   28806805       30124604     NR_037599     PDCD6IPP2
14  chr15   28806805       30124604     NR_047567     GOLGA6L7P
15  chr15   28806805       30124604     NR_135221  LOC100130111
16  chr20   14852458       14984316     NM_080676       MACROD2
17  chr20   14852458       14984316     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67310816       68907606     NM_000695       ALDH3B2
1   chr11   67310816       68907606     NM_000852         GSTP1
3   chr11   67310816       68907606  NM_001031847         CPT1A
4   chr11   67310816       68907606  NM_001039656        TESMIN
5   chr11   67310816       68907606  NM_001161473       ALDH3B1
6   chr11   67310816       68907606  NM_001164164        PPP6R3
7   chr11   67310816       68907606  NM_001166102        NDUFV1
8   chr11   67310816       68907606  NM_001243750         NUDT8
10  chr11   67310816       68907606  NM_001300907         KMT5B
14  chr11   67310816       68907606     NM_002180       IGHMBP2
15  chr11   67310816       68907606     NM_002335          LRP5
16  chr11   67310816       68907606     NM_002496        NDUFS8
18  chr11   67310816       68907606     NM_005995         TBX10
19  chr11   67310816       68907606     NM_006019        TCIRG1
21  chr11   67310816       68907606     NM_015973           GAL
23  chr11   67310816       68907606     NM_022338      C11orf24
24  chr11   67310816       68907606     NM_030930       UNC93B1
25  chr11   67310816       68907606     NM_080658          ACY3
26  chr11   67310816       68907606     NM_139075         TPCN2
27  chr11   67310816       68907606     NM_145015        MRGPRF
28  chr11   67310816       68907606     NM_181514        MRPL21
30  chr11   67310816       68907606     NM_198923        MRGPRD
31  chr11   67310816       68907606     NM_212469          CHKA
32  chr11   67310816       68907606     NR_024249      FAM86C2P
33  chr11   67310816       68907606     NR_033791        DOC2GP
34  chr11   67310816       68907606     NR_036122       MIR3164
35  chr11   67310816       68907606     NR_039840       MIR4691
36  chr11   67310816       68907606     NR_106811       MIR6753
37  chr11   67310816       68907606     NR_106963       MIR7113
38  chr11   67310816       68907606     NR_120541    MRGPRF-AS1
39  chr11   67310816       68907606     NR_130935      C11orf72
40  chr13   59291866       61060035  NM_001042517        DIAPH3
41  chr13   59291866       61060035  NM_001146070         TDRD3
47  chr13   59291866       61060035     NR_046539    DIAPH3-AS1
48  chr13   59291866       61060035     NR_046540    DIAPH3-AS2
49  chr13   59291866       61060035     NR_047022     LINC00434
52  chr13   63289478       65057647     NR_002171      OR7E156P
53  chr13   63289478       65057647     NR_047011     LINC00395
54  chr13   63289478       65057647     NR_047029     LINC00448
57  chr13   63289478       65057647     NR_126409     LINC00376
58  chr13   63289478       65057647     NR_130763  LOC102723968
59  chr14   21908509       22582353  NM_001001912         OR4E2
60  chr14   21908509       22582353  NM_001005465        OR10G3
61  chr14   21908509       22582353  NM_001005466        OR10G2
62  chr14   21908509       22582353  NM_001163380         RAB2B
63  chr14   21908509       22582353  NM_001303523          TOX4
64  chr14   21908509       22582353  NM_001317107         OR4E1
65  chr14   21908509       22582353     NM_019852        METTL3
67  chr14   21908509       22582353     NR_111966         SALL2
69   chr7  110670859      110797847  NM_001099658         LRRN3
70   chr7  110670859      110797847  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89117699       90301514  NM_001105522      TRIM49D2
2   chr11   89117699       90301514  NM_001136486        TRIM64
3   chr11   89117699       90301514  NM_001143837          NOX4
4   chr11   89117699       90301514  NM_001143975        UBTFL1
5   chr11   89117699       90301514  NM_001144073       CHORDC1
6   chr11   89117699       90301514  NM_001164397       TRIM64B
7   chr11   89117699       90301514  NM_001195234       TRIM49C
8   chr11   89117699       90301514  NM_001206627      TRIM49D1
10  chr11   89117699       90301514  NM_001271942        TRIM77
15  chr11   89117699       90301514     NM_005467       NAALAD2
16  chr11   89117699       90301514     NM_020358        TRIM49
17  chr11   89117699       90301514     NM_153696        FOLH1B
18  chr11   89117699       90301514     NR_028346      TRIM53AP
20  chr11   89117699       90301514     NR_039711       MIR4490
21  chr11   89117699       90301514     NR_104190      DISC1FP1
23  chr14   47807941       48126372  NM_001113498         MDGA2
26  chr16   21760768       22135998  NM_001161683          OTOA
27  chr16   21760768       22135998  NM_001164579      C16orf52
28  chr16   21760768       22135998  NM_001310148        NPIPB4
29  chr16   21760768       22135998     NM_003366        UQCRC2
32  chr16   21760768       22135998     NM_173615         VWA3A
33  chr16   21760768       22135998     NM_173806         PDZD9
34  chr16   21760768       22135998     NR_003370        RRN3P1
35  chr20   14694905       14797132     NM_080676       MACROD2
36   chr5   93421260       93906520  NM_001145678      KIAA0825
37   chr5   93421260       93906520  NM_001163418       FAM172A
39   chr9   44292241       44433820     NR_121564  LOC101927827
40   chr9   44292241       44433820     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21808756       21923920  NM_001170629      CHD8
1   chr14   21808756       21923920     NM_007192   SUPT16H
2   chr14   21808756       21923920     NM_020366   RPGRIP1
4   chr14   21808756       21923920     NR_002916    SNORD8
5   chr14   21808756       21923920     NR_003029    SNORD9
6   chr14   21837826       22098155  NM_001005465    OR10G3
7   chr14   21837826       22098155  NM_001163380     RAB2B
8   chr14   21837826       22098155  NM_001170629      CHD8
9   chr14   21837826       22098155  NM_001303523      TOX4
10  chr14   21837826       22098155     NM_007192   SUPT16H
11  chr14   21837826       22098155     NM_019852    METTL3
14  chr14   21837826       22098155     NR_002916    SNORD8
15  chr14   21837826       22098155     NR_003029    SNORD9
16  chr14   21837826       22098155     NR_111966     SALL2
18   chr5   82372807       82683956  NM_001318012     XRCC4
20   chr5   82372807       82683956     NM_174909  TMEM167A
21   chr7  153785138      153940840  NM_001039350      DPP6,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  108360988      108474163     NM_006113      VAV3
1   chr1  108360988      108474163     NR_107006   MIR7852
2  chr14   21794196       21942443  NM_001163380     RAB2B
3  chr14   21794196       21942443  NM_001170629      CHD8
4  chr14   21794196       21942443     NM_007192   SUPT16H
5  chr14   21794196       21942443     NM_020366   RPGRIP1
8  chr14   21794196       21942443     NR_002916    SNORD8
9  chr14   21794196       21942443     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   75176603       75320641  NM_001039479         AREL1
1   chr14   75176603       75320641  NM_001080408         PROX2
2   chr14   75176603       75320641  NM_001318508          FCF1
4   chr14   75176603       75320641     NM_019589         YLPM1
5    chr4  169202019      170064676  NM_001012967        DDX60L
6    chr4  169202019      170064676  NM_001166108         PALLD
10   chr4  169202019      170064676     NM_017631         DDX60
11   chr4  169202019      170064676     NM_020870        SH3RF1
12   chr4  169202019      170064676     NM_032783          CBR4
13   chr7    5642906        5752070     NM_003088         FSCN1
14   chr7    5642906        5752070     NM_207116        RNF216
15   chr7    5642906        5752070     NR_046834    RNF216-IT1
16   chr7    5642906        5752070     NR_106934       MIR6874
17   chr9   41882191       42857557  NM_001012419     ANKRD20A3
18   chr9   41882191       42857557  NM_001012421     ANKRD20A2
19   chr9   41882191       42857557     NM_199244       FOXD4L4
20   chr9   41882191       42857557     NR_003670        FGF7P3
21   chr9   41882191       42857557     NR_015363         GLIDR
22   chr9   41882191       42857557     NR_046175     LOC286297
23   chr9   41882191       42857557     NR_121570  LOC101928381
24   chr9   41882191       42857557     NR_121572      GXYLT1P3
27   chr9   41882191       42857557     NR_126048  LOC102724238
28   chr9   41882191       42857557     NR_126049     LOC554249
29   chr9   41882191       42857557     NR_135597  LOC101928195
30   chr9   41882191       42857557     NR_136299  LOC101929583
31   chr9   41882191       42857557     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   37363932       37477728     NM_052997  ANKRD30A
1   chr14   21775974       22078715  NM_001005465    OR10G3
2   chr14   21775974       22078715  NM_001163380     RAB2B
3   chr14   21775974       22078715  NM_001170629      CHD8
4   chr14   21775974       22078715  NM_001303523      TOX4
5   chr14   21775974       22078715     NM_007192   SUPT16H
6   chr14   21775974       22078715     NM_019852    METTL3
7   chr14   21775974       22078715     NM_020366   RPGRIP1
10  chr14   21775974       22078715     NR_002916    SNORD8
11  chr14   21775974       22078715     NR_003029    SNORD9
12  chr14   21775974       22078715     NR_111966     SALL2
14   chr7   11750518       11891903     NM_015204    THSD7A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   55745889       55990307  NM_001142770        PCDH15
3   chr11  122036230      122299186     NR_024430      MIR100HG
8   chr14   21865999       22024501  NM_001163380         RAB2B
9   chr14   21865999       22024501  NM_001170629          CHD8
10  chr14   21865999       22024501  NM_001303523          TOX4
11  chr14   21865999       22024501     NM_019852        METTL3
14  chr14   21865999       22024501     NR_111966         SALL2
16  chr18   56047122       56439428  NM_001144964        NEDD4L
20  chr18   56047122       56439428  NM_001289967  LOC101927322
21  chr18   56047122       56439428     NM_006785         MALT1
23  chr18   56047122       56439428     NM_052947         ALPK2
24  chr18   56047122       56439428     NR_029667        MIR122
25  chr18   56047122       56439428     NR_039899       MIR3591
26  chr18   56047122       56439428     NR_132963      SNORA108
27  chr20   14683626       14853982     NM_080676       MACROD2
28   chr9  116764532      116867968  NM_001318041        ZNF618
29   chr9  116764532      116867968     NM_001633          AMBP
30   chr9  116764532      116867968     NM_138424         KIF12,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21685420       22562875  NM_001001912      OR4E2
1   chr14   21685420       22562875  NM_001005465     OR10G3
2   chr14   21685420       22562875  NM_001005466     OR10G2
3   chr14   21685420       22562875  NM_001163380      RAB2B
4   chr14   21685420       22562875  NM_001170629       CHD8
5   chr14   21685420       22562875  NM_001303523       TOX4
6   chr14   21685420       22562875  NM_001317107      OR4E1
7   chr14   21685420       22562875     NM_007192    SUPT16H
8   chr14   21685420       22562875     NM_019852     METTL3
9   chr14   21685420       22562875     NM_020366    RPGRIP1
11  chr14   21685420       22562875     NM_031314     HNRNPC
13  chr14   21685420       22562875     NR_002916     SNORD8
14  chr14   21685420       22562875     NR_003029     SNORD9
15  chr14   21685420       22562875     NR_111966      SALL2
17  chr15   28649474       28815850     NR_033351    GOLGA8F
18  chr15   28649474       28815850     NR_033353    GOLGA8G
19  chr15   28649474       28815850     NR_039734  MIR4509-3
21  chr20   14628959       14742134     NM_080676    MACROD2
22   chr6   91076794       91224076     NM_145332     MAP3K7,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  142706502      142833103     NR_046228  ANKRD20A12P
1   chr11   48438045       48565711  NM_001005512       OR4A47
2   chr14   21878225       22113753  NM_001005465       OR10G3
3   chr14   21878225       22113753  NM_001005466       OR10G2
4   chr14   21878225       22113753  NM_001163380        RAB2B
5   chr14   21878225       22113753  NM_001170629         CHD8
6   chr14   21878225       22113753  NM_001303523         TOX4
7   chr14   21878225       22113753     NM_019852       METTL3
10  chr14   21878225       22113753     NR_111966        SALL2
12   chr4   69206264       69711462  NM_001031732       YTHDC1
13   chr4   69206264       69711462     NM_001075      UGT2B10
14   chr4   69206264       69711462     NM_001076      UGT2B15
15   chr4   69206264       69711462     NM_001077      UGT2B17
16   chr4   69206264       69711462     NM_014058    TMPRSS11E
17   chr7  110646826      110856182  NM_001099658        LRRN3
18   chr7  110646826      110856182  NM_001244606       IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   37888987       38118649     NR_135110  LOC105376633
1   chr14   21814676       21983761  NM_001163380         RAB2B
2   chr14   21814676       21983761  NM_001170629          CHD8
3   chr14   21814676       21983761  NM_001303523          TOX4
4   chr14   21814676       21983761     NM_007192       SUPT16H
5   chr14   21814676       21983761     NM_019852        METTL3
6   chr14   21814676       21983761     NM_020366       RPGRIP1
9   chr14   21814676       21983761     NR_002916        SNORD8
10  chr14   21814676       21983761     NR_003029        SNORD9
11  chr15   28212454       28374825     NM_000275          OCA2
13  chr15   28212454       28374825     NM_004667         HERC2
14   chr5   17741026       17858882     NR_134286     LOC646241,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143546930      145019608  NM_001002810       PDE4DIP
3   chr1  143546930      145019608  NM_001123068       PPIAL4G
4   chr1  143546930      145019608  NM_001135789       PPIAL4C
9   chr1  143546930      145019608  NM_001277444         NBPF9
10  chr1  143546930      145019608  NM_001278267        NBPF20
11  chr1  143546930      145019608  NM_001287385        FAM72C
12  chr1  143546930      145019608  NM_001345942        FAM72D
17  chr1  143546930      145019608     NR_003242        PFN1P2
18  chr1  143546930      145019608     NR_024511     LINC00623
20  chr1  143546930      145019608     NR_102405         NBPF8
21  chr1  143546930      145019608     NR_104014     LINC01138
22  chr1  143546930      145019608     NR_106967       MIR6077
23  chr1  143546930      145019608     NR_111930  LOC100132057
24  chr1  143546930      145019608     NR_111953     LINC00869
26  chr3   60350919       60513640  NM_001320899          FHIT
27  chr6  131013625      131151523  NM_001195597         SMLR1
28  chr9   38993133       39186586     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   77618141       77774796  NM_001304505        HMG20A
1   chr15   77618141       77774796     NM_024776         PEAK1
2   chr20    5122416        5914058  NM_001303477     C20orf196
4   chr20    5122416        5914058     NM_001819          CHGB
5   chr20    5122416        5914058     NM_003818          CDS2
6   chr20    5122416        5914058     NM_019593        GPCPD1
7   chr20    5122416        5914058     NM_144773        PROKR2
8   chr20    5122416        5914058     NR_015406     LINC00654
9   chr20    5122416        5914058     NR_029405     LOC643406
10  chr20    5122416        5914058     NR_038240     LINC00658
11  chr20    5122416        5914058     NR_109860  LOC101929207
12  chr22   17234646       17569182  NM_001037814          GAB4
13  chr22   17234646       17569182  NM_001289905        IL17RA
14  chr22   17234646       17569182     NM_175878          XKR3
15  chr22   17234646       17569182     NR_003607       HSFY1P1
16  chr22   17234646       17569182     NR_015352         CECR7
17   chr8    7885686        8014947     NR_031689      MIR548I3,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11   40319895       40469469  NM_001258419        LRRC4C
1  chr20   14895225       15012706     NM_080676       MACROD2
2  chr20   14895225       15012706     NR_037841   MACROD2-AS1
4   chr9   67129919       67400154     NR_002817        AQP7P1
5   chr9   67129919       67400154     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   25075342       25302920  NM_001009909         LUZP2
1   chr11   67271731       67501393     NM_000695       ALDH3B2
2   chr11   67271731       67501393     NM_000852         GSTP1
4   chr11   67271731       67501393  NM_001166102        NDUFV1
5   chr11   67271731       67501393  NM_001243750         NUDT8
6   chr11   67271731       67501393  NM_001318496         CABP2
7   chr11   67271731       67501393     NM_004910       PITPNM1
8   chr11   67271731       67501393     NM_005851       CDK2AP2
9   chr11   67271731       67501393     NM_005995         TBX10
10  chr11   67271731       67501393     NM_080658          ACY3
12  chr11   67271731       67501393     NR_033791        DOC2GP
14  chr11   67271731       67501393     NR_130935      C11orf72
15  chr14   21725500       21886612  NM_001170629          CHD8
16  chr14   21725500       21886612     NM_007192       SUPT16H
17  chr14   21725500       21886612     NM_020366       RPGRIP1
19  chr14   21725500       21886612     NM_031314        HNRNPC
20  chr14   21725500       21886612     NR_002916        SNORD8
21  chr14   21725500       21886612     NR_003029        SNORD9
22  chr14   37625877       37778337  NM_001171170      SLC25A21
23  chr14   37625877       37778337  NM_001195296        MIPOL1
24  chr14   37625877       37778337     NR_033240  SLC25A21-AS1
25   chr3  131225159      131364806  NM_001289112         CPNE4
28   chr3  159946299      160053673  NM_001190241         IFT80
30   chr4   91179306       91282742  NM_001145065        CCSER1
32   chr8     137295         453235  NM_001042415        ZNF596
34   chr8     137295         453235  NM_001256113          TDRP
38   chr8     137295         453235     NM_012173        FBXO25
40   chr8     137295         453235     NR_003572     RPL23AP53
41   chr8     137295         453235     NR_103537        FAM87A
42   chr9   30323461       30424587     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21915221       22026599  NM_001163380         RAB2B
1   chr14   21915221       22026599  NM_001303523          TOX4
2   chr14   21915221       22026599     NM_019852        METTL3
4   chr14   21915221       22026599     NR_111966         SALL2
6    chr2   26599791       26700698     NM_004802          OTOF
7    chr2   26599791       26700698     NM_033505       SELENOI
8    chr2   26599791       26700698     NM_145038          DRC1
10  chr20   14654451       14762121     NM_080676       MACROD2
11   chr6  162851855      163191512  NM_001080378         PACRG
13   chr6  162851855      163191512     NM_013988         PARK2
14   chr7   19732330       19855454  NM_001002926       TWISTNB
15   chr7   19732330       19855454     NM_152774       TMEM196
16   chr7   19732330       19855454     NR_036101       MIR3146
17   chr9   88402604       89418941  NM_001185074        ZCCHC6
18   chr9   88402604       89418941  NM_001276366      C9orf153
20   chr9   88402604       89418941  NM_001321881         NAA35
23   chr9   88402604       89418941     NM_016548         GOLM1
25   chr9   88402604       89418941     NM_030940         ISCA1
27   chr9   88402604       89418941     NR_029410     LOC389765
28   chr9   88402604       89418941     NR_110996  LOC101927623,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    5355523        5478994  NM_001004750        OR51B6
1   chr11    5355523        5478994  NM_001004754        OR51I2
2   chr11    5355523        5478994  NM_001004756        OR51M1
3   chr11    5355523        5478994  NM_001004757        OR51Q1
4   chr11    5355523        5478994  NM_001005288        OR51I1
5   chr11    5355523        5478994  NM_001005567        OR51B5
7   chr17   21356952       21799548  NM_001113434      C17orf51
8    chr2  186420318      186783947     NM_173651         FSIP2
9    chr2  186420318      186783947     NR_110214  LOC101927196
12   chr2  186420318      186783947     NR_144453     FSIP2-AS1
14   chr2  242421326      242918886  NM_001164356         THAP4
15   chr2  242421326      242918886  NM_001165031         DTYMK
16   chr2  242421326      242918886  NM_001167601          NEU4
18   chr2  242421326      242918886  NM_001271978         STK25
21   chr2  242421326      242918886  NM_001287249        D2HGDH
22   chr2  242421326      242918886  NM_001330161          ING5
24   chr2  242421326      242918886     NM_005018         PDCD1
25   chr2  242421326      242918886     NM_014808         FARP2
27   chr2  242421326      242918886     NM_022134       GAL3ST2
29   chr2  242421326      242918886     NM_032515           BOK
30   chr2  242421326      242918886     NM_173821          RTP5
31   chr2  242421326      242918886     NM_178326         ATG4B
32   chr2  242421326      242918886     NR_033346       BOK-AS1
33   chr2  242421326      242918886     NR_110220     LINC01237
34   chr2  242421326      242918886     NR_110592  LOC102723927
35   chr2  242421326      242918886     NR_135766     LOC285095
38   chr9    2499724        2643756     NM_003383         VLDLR
39   chr9    2499724        2643756     NR_015375     VLDLR-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   80999173       82669819  NM_001145026         PTPRQ
1   chr12   80999173       82669819  NM_001220473        PPFIA2
6   chr12   80999173       82669819  NM_001324423         LIN7A
7   chr12   80999173       82669819  NM_001330243         ACSS3
8   chr12   80999173       82669819     NM_002469          MYF6
10  chr12   80999173       82669819     NM_005593          MYF5
11  chr12   80999173       82669819     NR_030348        MIR617
12  chr12   80999173       82669819     NR_030349        MIR618
13  chr12   80999173       82669819     NR_039848       MIR4699
14  chr12   80999173       82669819     NR_110089  LOC101928449
15  chr12   80999173       82669819     NR_120468     LINC01490
16  chr12   80999173       82669819     NR_120491  LOC102724663
17  chr20   14851198       15075297     NM_080676       MACROD2
18  chr20   14851198       15075297     NR_037841   MACROD2-AS1
20   chr4  134635440      135257897  NM_001114734       PABPC4L
21   chr4  169205088      169312937  NM_001012967        DDX60L
23   chr4  169205088      169312937     NM_017631         DDX60,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   12760245       12862438  NM_001080830  PRAMEF12
1    chr1   12760245       12862438  NM_001103170   AADACL3
2    chr1   12760245       12862438  NM_001294139   PRAMEF1
4    chr1   12760245       12862438     NM_152290  C1orf158
5   chr14   21879218       22020009  NM_001163380     RAB2B
6   chr14   21879218       22020009  NM_001170629      CHD8
7   chr14   21879218       22020009  NM_001303523      TOX4
8   chr14   21879218       22020009     NM_019852    METTL3
11  chr14   21879218       22020009     NR_111966     SALL2
13   chr4      84139         210510  NM_001039127    ZNF718
14   chr4      84139         210510  NM_001286052    ZNF595
17   chr4      84139         210510     NR_027481   ZNF876P,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr2   97140949       97268681  NM_001115016        KANSL3
1   chr2   97140949       97268681  NM_001285485        NEURL3
2   chr2   97140949       97268681  NM_001319085        ARID5A
6   chr2   97140949       97268681     NR_135564  LOC105373496
7   chr9    6630557        7973666     NM_000170          GLDC
8   chr9    6630557        7973666  NM_001146695         KDM4C
12  chr9    6630557        7973666  NM_001318058       TMEM261
14  chr9   41443948       41570890  NM_001113541     SPATA31A5
15  chr9   41443948       41570890     NM_015667     SPATA31A7
16  chr9   41443948       41570890     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   59111585       59726078  NM_001085487         MYSM1
1    chr1   59111585       59726078     NM_002228           JUN
2    chr1   59111585       59726078     NR_027120         HSD52
3    chr1   59111585       59726078     NR_034014     LINC01135
4    chr1   59111585       59726078     NR_110626     LINC01358
5   chr14   38004654       38193451  NM_001195296        MIPOL1
6   chr14   38004654       38193451  NM_001310135          TTC6
7   chr14   38004654       38193451     NM_004496         FOXA1
8   chr15   28701008       29045462  NM_001282468       GOLGA8M
9   chr15   28701008       29045462     NR_026589       WHAMMP2
10  chr15   28701008       29045462     NR_033351       GOLGA8F
11  chr15   28701008       29045462     NR_033353       GOLGA8G
12  chr15   28701008       29045462     NR_036443       HERC2P9
13  chr15   28701008       29045462     NR_036475  LOC100289656
14  chr15   28701008       29045462     NR_037599     PDCD6IPP2
15  chr15   28701008       29045462     NR_039734     MIR4509-3
16  chr18    8073766        8570803     NM_002845         PTPRM
17  chr18    8073766        8570803     NR_024419  LOC100192426
18  chr19   21860068       22248248  NM_001256650         ZNF43
19  chr19   21860068       22248248  NM_001329971        ZNF208
23  chr19   21860068       22248248     NM_033468        ZNF257
24  chr19   21860068       22248248     NM_173531        ZNF100
25  chr19   21860068       22248248     NR_024523     LOC641367
27   chr3   60174838       60409898  NM_001320899          FHIT
28   chr7   64055824       64236741  NM_001282360        ZNF107
29   chr7   64055824       64236741     NR_077227  LOC100128885
31   chr7   64055824       64236741     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21791697       23639587  NM_001001912         OR4E2
1   chr14   21791697       23639587  NM_001005465        OR10G3
2   chr14   21791697       23639587  NM_001005466        OR10G2
3   chr14   21791697       23639587  NM_001039619         PRMT5
4   chr14   21791697       23639587  NM_001099780        PSMB11
5   chr14   21791697       23639587  NM_001126105        SLC7A7
7   chr14   21791697       23639587  NM_001130706      C14orf93
8   chr14   21791697       23639587  NM_001130725         PSMB5
10  chr14   21791697       23639587  NM_001163380         RAB2B
11  chr14   21791697       23639587  NM_001164815         ACIN1
13  chr14   21791697       23639587  NM_001170629          CHD8
14  chr14   21791697       23639587  NM_001267036        SLC7A8
17  chr14   21791697       23639587  NM_001289097         AJUBA
18  chr14   21791697       23639587  NM_001303523          TOX4
19  chr14   21791697       23639587  NM_001317107         OR4E1
20  chr14   21791697       23639587  NM_001318870        MRPL52
21  chr14   21791697       23639587  NM_001329226         LRP10
22  chr14   21791697       23639587     NM_001344          DAD1
23  chr14   21791697       23639587     NM_001805         CEBPE
24  chr14   21791697       23639587     NM_004995         MMP14
25  chr14   21791697       23639587     NM_005015         OXA1L
26  chr14   21791697       23639587     NM_007192       SUPT16H
28  chr14   21791697       23639587     NM_017815         HAUS4
29  chr14   21791697       23639587     NM_017924     C14orf119
30  chr14   21791697       23639587     NM_018107         RBM23
31  chr14   21791697       23639587     NM_019852        METTL3
32  chr14   21791697       23639587     NM_020366       RPGRIP1
34  chr14   21791697       23639587     NM_022060         ABHD4
35  chr14   21791697       23639587     NM_022478         CDH24
38  chr14   21791697       23639587     NM_173527          REM2
40  chr14   21791697       23639587     NR_002916        SNORD8
41  chr14   21791697       23639587     NR_003029        SNORD9
42  chr14   21791697       23639587     NR_039856       MIR4707
44  chr14   21791697       23639587     NR_110002  LOC101926933
45  chr14   21791697       23639587     NR_111966         SALL2
47  chr14   21791697       23639587     NR_120599     PRMT5-AS1
48  chr16   21515617       21685687  NM_001077180        METTL9
50  chr16   21515617       21685687     NM_005849         IGSF6
51  chr16   21515617       21685687     NR_002594      SLC7A5P2
52  chr16   21515617       21685687     NR_049833     MIR3680-2
53  chr16   21515617       21685687     NR_110930  LOC101927814
54   chr2  215438449      215599058     NM_000465         BARD1
55   chr2  215438449      215599058  NM_001080500         VWC2L
56   chr4  190309931      190824472     NR_121679     LINC01262
57   chr4  190309931      190824472     NR_132380     LINC01596
58   chr4  190309931      190824472     NR_135513  LOC105379514
59   chr5   16049043       16174779  NM_001102562       MARCH11
60   chr5  117405350      117536534     NR_104997  LOC102467224
61   chr9   28598450       28844336  NM_001258282        LINGO2
63   chr9   41873404       42302241     NR_003670        FGF7P3
64   chr9   41873404       42302241     NR_015363         GLIDR
67   chr9   41873404       42302241     NR_126048  LOC102724238
68   chr9   41873404       42302241     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   79034054       79241028     NM_006417         IFI44
1    chr1   79034054       79241028     NM_006820        IFI44L
3   chr14   61884661       62031549     NM_006255         PRKCH
4   chr14   61884661       62031549     NR_110416  LOC101927780
6   chr16   18475865       18604584  NM_001004060         NOMO2
7   chr16   18475865       18604584     NR_003569       ABCC6P1
8   chr16   18475865       18604584     NR_036140     MIR3179-1
9   chr16   18475865       18604584     NR_036142     MIR3180-2
10  chr16   18475865       18604584     NR_036144     MIR3180-3
11  chr16   18475865       18604584     NR_037442     MIR3670-1
12  chr16   21463215       21603715     NR_002594      SLC7A5P2
13  chr16   21463215       21603715     NR_027155        SMG1P3
14  chr16   21463215       21603715     NR_049833     MIR3680-2
15  chr16   21463215       21603715     NR_110930  LOC101927814
16  chr22   20588872       20861129  NM_001256523         ZNF74
17  chr22   20588872       20861129     NM_153334        SCARF2
18  chr22   20588872       20861129     NR_033825        KLHL22
19  chr22   20588872       20861129     NR_136569     LOC729461
20  chr22   20588872       20861129     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145046204      145206140  NM_001277444         NBPF9
1    chr1  145046204      145206140  NM_001278267        NBPF20
2    chr1  145046204      145206140     NM_004892        SEC22B
3    chr1  145046204      145206140     NM_022359       PDE4DIP
4   chr10   67699479       68005088  NM_001127384        CTNNA3
6   chr14   21802763       21963074  NM_001163380         RAB2B
7   chr14   21802763       21963074  NM_001170629          CHD8
8   chr14   21802763       21963074  NM_001303523          TOX4
9   chr14   21802763       21963074     NM_007192       SUPT16H
10  chr14   21802763       21963074     NM_020366       RPGRIP1
13  chr14   21802763       21963074     NR_002916        SNORD8
14  chr14   21802763       21963074     NR_003029        SNORD9
15   chr7   64057790       64204697  NM_001282360        ZNF107
16   chr7   64057790       64204697     NR_077227  LOC100128885
18   chr7   64057790       64204697     NR_106898       MIR6839
19   chr8   97795542       98082239     NM_016134           CPQ
20   chr8   97795542       98082239     NR_125390  LOC101927066
21   chr9   22390039       22717981     NM_022160        DMRTA1
22   chr9   22390039       22717981     NR_038977     LINC01239,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12799275       12936662  NM_001013631   HNRNPCL1
1    chr1   12799275       12936662  NM_001080830   PRAMEF12
2    chr1   12799275       12936662  NM_001146181   HNRNPCL3
3    chr1   12799275       12936662  NM_001146344   PRAMEF11
4    chr1   12799275       12936662  NM_001294139    PRAMEF1
5    chr1   12799275       12936662  NM_001302551   HNRNPCL4
7    chr1   12799275       12936662     NM_023014    PRAMEF2
8    chr1   12799275       12936662     NM_152290   C1orf158
9   chr13   80793086       81090746  NM_001318536      SPRY2
12  chr14   21696583       21826300     NM_007192    SUPT16H
13  chr14   21696583       21826300     NM_020366    RPGRIP1
14  chr14   21696583       21826300     NM_031314     HNRNPC
15  chr16   68613029       68823950  NM_001317184       CDH1
16  chr16   68613029       68823950  NM_001317195       CDH3
17  chr16   68613029       68823950     NR_106988  MIR7641-2
18   chr7    3791131        3961920     NM_152744       SDK1
19   chr7  133276870      133411018     NM_021807      EXOC4,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21791054       21943156  NM_001163380     RAB2B
1  chr14   21791054       21943156  NM_001170629      CHD8
2  chr14   21791054       21943156     NM_007192   SUPT16H
3  chr14   21791054       21943156     NM_020366   RPGRIP1
6  chr14   21791054       21943156     NR_002916    SNORD8
7  chr14   21791054       21943156     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68034055       68503366  NM_001127384        CTNNA3
2   chr14   21788265       22051125  NM_001005465        OR10G3
3   chr14   21788265       22051125  NM_001163380         RAB2B
4   chr14   21788265       22051125  NM_001170629          CHD8
5   chr14   21788265       22051125  NM_001303523          TOX4
6   chr14   21788265       22051125     NM_007192       SUPT16H
7   chr14   21788265       22051125     NM_019852        METTL3
8   chr14   21788265       22051125     NM_020366       RPGRIP1
11  chr14   21788265       22051125     NR_002916        SNORD8
12  chr14   21788265       22051125     NR_003029        SNORD9
13  chr14   21788265       22051125     NR_111966         SALL2
15  chr18   35124864       35285132     NM_020180         CELF4
16  chr18   35124864       35285132     NR_036202       MIR4318
17   chr3  118685840      118788067  NM_001015887        IGSF11
19   chr3  176559119      176852206  NM_001321193       TBL1XR1
21   chr4   81855630       82658862     NM_001201          BMP3
22   chr4   81855630       82658862  NM_001206997       C4orf22
23   chr4   81855630       82658862  NM_001282483         PRKG2
25   chr4   81855630       82658862     NM_152545      RASGEF1B
26   chr4   81855630       82658862     NR_125908  LOC101928942
27   chr9   39104106       39443542  NM_001085452     SPATA31A1
28   chr9   39104106       39443542     NM_033655       CNTNAP3
29   chr9   39104106       39443542     NR_026803       FAM74A1
30   chr9  102195039      102539646     NR_109802  LOC101928438,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67556286       67706641  NM_001127384        CTNNA3
2   chr11   40304202       40454557  NM_001258419        LRRC4C
4   chr12  120598169      120831368     NM_000928       PLA2G1B
5   chr12  120598169      120831368     NM_002442          MSI1
6   chr12  120598169      120831368     NM_002859           PXN
7   chr12  120598169      120831368     NM_006836          GCN1
8   chr12  120598169      120831368     NM_012240         SIRT4
10  chr12  120598169      120831368     NM_053275         RPLP0
11  chr12  120598169      120831368     NR_038924       PXN-AS1
12  chr14   21876938       22230860  NM_001001912         OR4E2
13  chr14   21876938       22230860  NM_001005465        OR10G3
14  chr14   21876938       22230860  NM_001005466        OR10G2
15  chr14   21876938       22230860  NM_001163380         RAB2B
16  chr14   21876938       22230860  NM_001170629          CHD8
17  chr14   21876938       22230860  NM_001303523          TOX4
18  chr14   21876938       22230860  NM_001317107         OR4E1
19  chr14   21876938       22230860     NM_019852        METTL3
22  chr14   21876938       22230860     NR_111966         SALL2
24  chr16   21480230       21764773  NM_001077180        METTL9
25  chr16   21480230       21764773  NM_001161683          OTOA
27  chr16   21480230       21764773     NM_005849         IGSF6
30  chr16   21480230       21764773     NR_002594      SLC7A5P2
31  chr16   21480230       21764773     NR_027155        SMG1P3
32  chr16   21480230       21764773     NR_049833     MIR3680-2
33  chr16   21480230       21764773     NR_110930  LOC101927814
34  chr17   48069261       48197820  NM_001199898          PDK2
37  chr17   48069261       48197820  NM_001257359        SAMD14
38  chr17   48069261       48197820     NM_002204         ITGA3
40  chr17   48069261       48197820     NM_005220          DLX3
41  chr17   48069261       48197820     NR_038230     LOC284080
42   chr7  143730149      143854909  NM_001001659        OR2A14
43   chr7  143730149      143854909  NM_001004135        OR2A12
44   chr7  143730149      143854909  NM_001004488        OR2A25
45   chr7  143730149      143854909  NM_001005480         OR2A2
46   chr7  143730149      143854909     NM_012365         OR2A5
47   chr9   28656928       28778174  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   80803399       81251370  NM_001318536         SPRY2
3   chr15   28705508       29090344  NM_001282468       GOLGA8M
4   chr15   28705508       29090344     NR_026589       WHAMMP2
5   chr15   28705508       29090344     NR_033351       GOLGA8F
6   chr15   28705508       29090344     NR_033353       GOLGA8G
7   chr15   28705508       29090344     NR_036443       HERC2P9
8   chr15   28705508       29090344     NR_036475  LOC100289656
9   chr15   28705508       29090344     NR_037599     PDCD6IPP2
10  chr15   28705508       29090344     NR_039734     MIR4509-3
11  chr15   28705508       29090344     NR_047567     GOLGA6L7P
12   chr7  124979267      125364740     NR_110188  LOC101928283
13   chr7  157290531      157499887  NM_001308267        PTPRN2
15   chr7  157290531      157499887     NR_029689      MIR153-2
16   chr7  157290531      157499887     NR_110157  LOC101927914
17   chr9   41875641       42191567     NR_003670        FGF7P3
18   chr9   41875641       42191567     NR_015363         GLIDR
21   chr9   41875641       42191567     NR_126048  LOC102724238
22   chr9   41875641       42191567     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28510377       29235708  NM_001130414         APBA2
1   chr15   28510377       29235708  NM_001282468       GOLGA8M
2   chr15   28510377       29235708     NM_004667         HERC2
3   chr15   28510377       29235708     NR_026589       WHAMMP2
4   chr15   28510377       29235708     NR_033351       GOLGA8F
6   chr15   28510377       29235708     NR_033353       GOLGA8G
8   chr15   28510377       29235708     NR_036443       HERC2P9
9   chr15   28510377       29235708     NR_036475  LOC100289656
10  chr15   28510377       29235708     NR_037599     PDCD6IPP2
11  chr15   28510377       29235708     NR_039734     MIR4509-3
13  chr15   28510377       29235708     NR_047567     GOLGA6L7P,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21766964       22142194  NM_001001912     OR4E2
1   chr14   21766964       22142194  NM_001005465    OR10G3
2   chr14   21766964       22142194  NM_001005466    OR10G2
3   chr14   21766964       22142194  NM_001163380     RAB2B
4   chr14   21766964       22142194  NM_001170629      CHD8
5   chr14   21766964       22142194  NM_001303523      TOX4
6   chr14   21766964       22142194  NM_001317107     OR4E1
7   chr14   21766964       22142194     NM_007192   SUPT16H
8   chr14   21766964       22142194     NM_019852    METTL3
9   chr14   21766964       22142194     NM_020366   RPGRIP1
12  chr14   21766964       22142194     NR_002916    SNORD8
13  chr14   21766964       22142194     NR_003029    SNORD9
14  chr14   21766964       22142194     NR_111966     SALL2
16   chr3  165297881      165551892     NM_000055      BCHE
17   chr5    3589679        3706372     NM_024337      IRX1
18   chr5   16035414       16258070  NM_001102562   MARCH11,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21861847       21964557  NM_001163380         RAB2B
1   chr14   21861847       21964557  NM_001170629          CHD8
2   chr14   21861847       21964557  NM_001303523          TOX4
5   chr14   21861847       21964557     NR_002916        SNORD8
6   chr14   55714021       57021980  NM_001271014          KTN1
7   chr14   55714021       57021980     NM_014924         ATG14
8   chr14   55714021       57021980     NM_017943        FBXO34
9   chr14   55714021       57021980     NM_021255         PELI2
11  chr14   55714021       57021980     NM_199047         TBPL2
12  chr14   55714021       57021980     NR_004844      RPL13AP3
13  chr14   55714021       57021980     NR_026796     LINC00520
14  chr14   55714021       57021980     NR_027123      KTN1-AS1
15  chr14   55714021       57021980     NR_135241  LOC101927690
16  chr16   83955727       84099115  NM_001080442       SLC38A8
17  chr16   83955727       84099115     NM_003791        MBTPS1
18  chr16   83955727       84099115     NM_019065        NECAB2
19  chr16   83955727       84099115     NM_182981        OSGIN1
20  chr19   47812376       47944327  NM_001009813         MEIS3
21  chr19   47812376       47944327  NM_001271749         C5AR2
25  chr19   47812376       47944327     NM_001736         C5AR1
26  chr19   47812376       47944327     NM_014681         DHX34
27  chr19   47812376       47944327     NM_015063        SLC8A2
29   chr7   64046569       64173795  NM_001282360        ZNF107
30   chr7   64046569       64173795     NR_077227  LOC100128885
32   chr7   64046569       64173795     NR_106898       MIR6839
33   chr7   64077194       64462183  NM_001007253        ERV3-1
34   chr7   64077194       64462183  NM_001160183        ZNF138
35   chr7   64077194       64462183  NM_001282360        ZNF107
36   chr7   64077194       64462183     NM_015852        ZNF117
37   chr7   64077194       64462183     NM_021148        ZNF273
39   chr7   64077194       64462183     NR_077227  LOC100128885
41   chr7   64077194       64462183     NR_106898       MIR6839
42   chr7  110480995      110588410  NM_001244606        IMMP2L
44   chr9   39112085       39777906  NM_001085452     SPATA31A1
45   chr9   39112085       39777906     NM_033655       CNTNAP3
46   chr9   39112085       39777906     NR_003528       ZNF658B
47   chr9   39112085       39777906     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr15   21175640       21633947  NR_040094    LINC01193
1  chr20   14796984       15018699  NM_080676      MACROD2
2  chr20   14796984       15018699  NR_037841  MACROD2-AS1
4   chr9   41799981       41965344  NR_003670       FGF7P3
5   chr9   41799981       41965344  NR_015363        GLIDR,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  244987687      245101044  NM_001312871     COX20
2    chr1  244987687      245101044     NM_004501    HNRNPU
4    chr1  244987687      245101044     NR_132782  SNORA100
5   chr16   15393415       15572301  NM_001128423    MPV17L
6   chr16   15393415       15572301  NM_001277325    NPIPA5
7   chr16   15393415       15572301     NM_033201  C16orf45
8    chr2  242414305      242564020  NM_001164356     THAP4
9    chr2  242414305      242564020  NM_001271978     STK25
12   chr2  242414305      242564020     NM_014808     FARP2
14   chr2  242414305      242564020     NM_032515       BOK
15   chr2  242414305      242564020     NR_033346   BOK-AS1
16   chr2  242414305      242564020     NR_036083   MIR3133,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   31385552       31538863  NM_001304274        IMMP1L
1   chr11   31385552       31538863     NM_019040          ELP4
2   chr11   31385552       31538863     NM_181706       DNAJC24
3   chr11   31385552       31538863     NM_181807         DCDC1
4   chr15   28700521       29037417  NM_001282468       GOLGA8M
5   chr15   28700521       29037417     NR_026589       WHAMMP2
6   chr15   28700521       29037417     NR_033351       GOLGA8F
7   chr15   28700521       29037417     NR_033353       GOLGA8G
8   chr15   28700521       29037417     NR_036443       HERC2P9
9   chr15   28700521       29037417     NR_036475  LOC100289656
10  chr15   28700521       29037417     NR_037599     PDCD6IPP2
11  chr15   28700521       29037417     NR_039734     MIR4509-3
12  chr16   10482078       11000488  NM_001079512        TVP23A
13  chr16   10482078       11000488  NM_001256160       ATF7IP2
14  chr16   10482078       11000488  NM_001286402         CIITA
15  chr16   10482078       11000488  NM_001323594         NUBP1
19  chr16   10482078       11000488     NM_001424          EMP2
21  chr16   10482078       11000488     NM_144674         TEKT5
24  chr16   82976573       83078816  NM_001220488         CDH13
26  chr16   82976573       83078816     NR_110937  LOC101928417
27   chr7  108484033      108585736  NM_001024607       C7orf66,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   48873406       49089539  NM_001286238    SPATA6
1    chr1   48873406       49089539  NM_001323575     AGBL4
2   chr14   21686015       21901916  NM_001170629      CHD8
3   chr14   21686015       21901916     NM_007192   SUPT16H
4   chr14   21686015       21901916     NM_020366   RPGRIP1
6   chr14   21686015       21901916     NM_031314    HNRNPC
7   chr14   21686015       21901916     NR_002916    SNORD8
8   chr14   21686015       21901916     NR_003029    SNORD9
9    chr5  104396861      104620915     NR_000039   RAB9BP1
10   chr7   64100938       64510041  NM_001007253    ERV3-1
11   chr7   64100938       64510041  NM_001160183    ZNF138
12   chr7   64100938       64510041  NM_001282360    ZNF107
13   chr7   64100938       64510041     NM_015852    ZNF117
14   chr7   64100938       64510041     NM_021148    ZNF273
15   chr7   64100938       64510041     NR_033416    CCT6P3
18   chr7   64100938       64510041     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   16170646       16282708  NM_001300779       DERA
1   chr12   83526846       83636570  NM_001320321      TMTC2
2   chr14   21825466       21989515  NM_001163380      RAB2B
3   chr14   21825466       21989515  NM_001170629       CHD8
4   chr14   21825466       21989515  NM_001303523       TOX4
5   chr14   21825466       21989515     NM_007192    SUPT16H
6   chr14   21825466       21989515     NM_019852     METTL3
9   chr14   21825466       21989515     NR_002916     SNORD8
10  chr14   21825466       21989515     NR_003029     SNORD9
11  chr14   21825466       21989515     NR_111966      SALL2
13  chr17   21411962       21722151  NM_001113434   C17orf51
14  chr18   40204785       40315627     NR_046174  LINC00907
15  chr20   14642162       14837435     NM_080676    MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143710138      143953416  NM_001123068       PPIAL4G
1    chr1  143710138      143953416  NM_001287385        FAM72C
2    chr1  143710138      143953416  NM_001345942        FAM72D
6    chr1  143710138      143953416     NR_104014     LINC01138
7    chr1  143710138      143953416     NR_111930  LOC100132057
9   chr15   28174082       28297967     NM_000275          OCA2
11   chr3    1800395        2201529     NM_175607         CNTN4
12   chr3    1800395        2201529     NR_046555     CNTN4-AS2
13   chr5      93561         879829  NM_001009877          BRD9
14   chr5      93561         879829  NM_001080478       LRRC14B
15   chr5      93561         879829  NM_001242412          AHRR
16   chr5      93561         879829  NM_001284351        SLC9A3
18   chr5      93561         879829     NM_004168          SDHA
19   chr5      93561         879829     NM_007030          TPPP
20   chr5      93561         879829     NM_007277         EXOC3
21   chr5      93561         879829     NM_013232         PDCD6
22   chr5      93561         879829     NM_018140         CEP72
23   chr5      93561         879829     NM_024786       ZDHHC11
24   chr5      93561         879829     NM_052909      PLEKHG4B
25   chr5      93561         879829     NM_145265       CCDC127
26   chr5      93561         879829     NR_024158        PP7080
27   chr5      93561         879829     NR_039661       MIR4456
29   chr5      93561         879829     NR_103444  LOC100996325
30   chr5      93561         879829     NR_104613         HRAT5
31   chr5      93561         879829     NR_125375  LOC100288152
32   chr5      93561         879829     NR_126522     EXOC3-AS1
34   chr5   19049262       19789383  NM_001291956         CDH18
37   chr6  131084334      131243586  NM_001135554       EPB41L2
38   chr6  131084334      131243586  NM_001195597         SMLR1
40   chr9   31382507       33261423  NM_001172415          BAG1
41   chr9   31382507       33261423  NM_001195249          APTX
44   chr9   31382507       33261423  NM_001195622        TOPORS
45   chr9   31382507       33261423  NM_001199987        NDUFB6
46   chr9   31382507       33261423  NM_001278352          ACO1
47   chr9   31382507       33261423  NM_001314039        DNAJA1
48   chr9   31382507       33261423     NM_001497       B4GALT1
49   chr9   31382507       33261423     NM_014314         DDX58
50   chr9   31382507       33261423     NM_014471        SPINK4
51   chr9   31382507       33261423     NM_018225          SMU1
52   chr9   31382507       33261423     NM_153809         TAF1L
53   chr9   31382507       33261423     NM_212558       TMEM215
54   chr9   31382507       33261423     NR_033991    TOPORS-AS1
57   chr9   31382507       33261423     NR_108108   B4GALT1-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr2  193637567      194324680     NR_002769     PCGEM1
1   chr22   19022177       19696021  NM_001035247      UFD1L
2   chr22   19022177       19696021  NM_001166242   C22orf39
3   chr22   19022177       19696021  NM_001178010      CDC45
4   chr22   19022177       19696021  NM_001184781      DGCR2
5   chr22   19022177       19696021  NM_001256534    SLC25A1
6   chr22   19022177       19696021  NM_001318151     MRPL40
8   chr22   19022177       19696021     NM_001835     CLTCL1
9   chr22   19022177       19696021     NM_003277      CLDN5
10  chr22   19022177       19696021     NM_003325       HIRA
12  chr22   19022177       19696021     NM_005315       GSC2
14  chr22   19022177       19696021     NM_022719     DGCR14
15  chr22   19022177       19696021     NM_053006      TSSK2
17  chr22   19022177       19696021     NR_024157     DGCR11
18  chr22   19022177       19696021     NR_024381  LINC00895
19  chr22   19022177       19696021     NR_103767  LINC01311
20   chr8   19720097       19840556     NM_000237        LPL,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  128539007      128872995  NM_001136103      TMEM132C
1   chr12  128539007      128872995     NR_037406       MIR3612
2   chr12  128539007      128872995     NR_039720      MIR4419B
3   chr12  128539007      128872995     NR_104647  LOC100996679
4   chr12  128539007      128872995     NR_104648  LOC101927694
5   chr14   21841665       23067780  NM_001001912         OR4E2
6   chr14   21841665       23067780  NM_001005465        OR10G3
7   chr14   21841665       23067780  NM_001005466        OR10G2
8   chr14   21841665       23067780  NM_001163380         RAB2B
9   chr14   21841665       23067780  NM_001170629          CHD8
10  chr14   21841665       23067780  NM_001303523          TOX4
11  chr14   21841665       23067780  NM_001317107         OR4E1
12  chr14   21841665       23067780     NM_001344          DAD1
13  chr14   21841665       23067780     NM_007192       SUPT16H
14  chr14   21841665       23067780     NM_019852        METTL3
16  chr14   21841665       23067780     NM_022060         ABHD4
18  chr14   21841665       23067780     NR_002916        SNORD8
19  chr14   21841665       23067780     NR_003029        SNORD9
20  chr14   21841665       23067780     NR_111966         SALL2
22  chr20   14725801       14991208     NM_080676       MACROD2
23  chr20   14725801       14991208     NR_037841   MACROD2-AS1
25   chr8   15317596       15433281     NM_006765         TUSC3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81506195       82188966     NM_000429         MAT1A
1   chr10   81506195       82188966  NM_001012973         PLAC9
2   chr10   81506195       82188966  NM_001243778       FAM213A
5   chr10   81506195       82188966  NM_001269053         DYDC1
6   chr10   81506195       82188966  NM_001270041         DYDC2
8   chr10   81506195       82188966  NM_001270367       TMEM254
11  chr10   81506195       82188966  NM_001278407        ANXA11
14  chr10   81506195       82188966     NM_003019         SFTPD
16  chr10   81506195       82188966     NR_002724         MBL1P
17  chr10   81506195       82188966     NR_027431   TMEM254-AS1
18  chr10   81506195       82188966     NR_029407     LOC642361
19  chr10   81506195       82188966     NR_033857       BMS1P21
20  chr10   81506195       82188966     NR_038464     LINC00857
21  chr10   81506195       82188966     NR_120611    NUTM2B-AS1
24  chr10   81506195       82188966     NR_136612  LOC100130698
26  chr16   21387873       21523818     NM_130464        NPIPB3
27  chr16   21387873       21523818     NR_024456  LOC100190986
28  chr16   21387873       21523818     NR_027155        SMG1P3
29  chr16   21387873       21523818     NR_045011       SNX29P1
30  chr16   21387873       21523818     NR_049833     MIR3680-2
31   chr9   41855666       42195102     NR_003670        FGF7P3
32   chr9   41855666       42195102     NR_015363         GLIDR
35   chr9   41855666       42195102     NR_126048  LOC102724238
36   chr9   41855666       42195102     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21865123       22048021  NM_001005465    OR10G3
1   chr14   21865123       22048021  NM_001163380     RAB2B
2   chr14   21865123       22048021  NM_001170629      CHD8
3   chr14   21865123       22048021  NM_001303523      TOX4
4   chr14   21865123       22048021     NM_019852    METTL3
7   chr14   21865123       22048021     NR_002916    SNORD8
8   chr14   21865123       22048021     NR_111966     SALL2
10  chr15   28185109       28366550     NM_000275      OCA2
12  chr15   28185109       28366550     NM_004667     HERC2
13   chr5  106768114      106892754     NM_001962     EFNA5
14   chr6    1855978        1974018  NM_001253846      GMDS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145310575      145625898  NM_001012758        NUDT17
1    chr1  145310575      145625898  NM_001039888      ANKRD34A
2    chr1  145310575      145625898  NM_001184795        PEX11B
3    chr1  145310575      145625898  NM_001277444         NBPF9
4    chr1  145310575      145625898  NM_001278267        NBPF20
5    chr1  145310575      145625898  NM_001280799       ANKRD35
6    chr1  145310575      145625898  NM_001302371        NBPF10
7    chr1  145310575      145625898  NM_001303040        ITGA10
8    chr1  145310575      145625898  NM_001303456        POLR3C
9    chr1  145310575      145625898  NM_001313972         TXNIP
11   chr1  145310575      145625898     NM_005105         RBM8A
12   chr1  145310575      145625898     NM_006099         PIAS3
15   chr1  145310575      145625898     NM_014455        RNF115
16   chr1  145310575      145625898     NM_032305       POLR3GL
17   chr1  145310575      145625898     NM_145277          HFE2
18   chr1  145310575      145625898     NM_153713         LIX1L
19   chr1  145310575      145625898     NR_002328        GNRHR2
23   chr1  145310575      145625898     NR_104217       NBPF25P
24   chr1  145310575      145625898     NR_106794       MIR6736
25   chr1  145310575      145625898     NR_125967  LOC101928979
26  chr14   21847385       22580225  NM_001001912         OR4E2
27  chr14   21847385       22580225  NM_001005465        OR10G3
28  chr14   21847385       22580225  NM_001005466        OR10G2
29  chr14   21847385       22580225  NM_001163380         RAB2B
30  chr14   21847385       22580225  NM_001170629          CHD8
31  chr14   21847385       22580225  NM_001303523          TOX4
32  chr14   21847385       22580225  NM_001317107         OR4E1
33  chr14   21847385       22580225     NM_007192       SUPT16H
34  chr14   21847385       22580225     NM_019852        METTL3
37  chr14   21847385       22580225     NR_002916        SNORD8
38  chr14   21847385       22580225     NR_003029        SNORD9
39  chr14   21847385       22580225     NR_111966         SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108423345      108892914  NM_001143989         NBPF4
1    chr1  108423345      108892914     NM_006113          VAV3
2    chr1  108423345      108892914     NM_013386      SLC25A24
4    chr1  108423345      108892914     NR_046653      VAV3-AS1
5    chr1  108423345      108892914     NR_107006       MIR7852
6   chr14   21707080       21848540     NM_007192       SUPT16H
7   chr14   21707080       21848540     NM_020366       RPGRIP1
8   chr14   21707080       21848540     NM_031314        HNRNPC
9   chr14   26730047       27528941     NM_002515         NOVA1
11  chr14   26730047       27528941     NR_036193       MIR4307
12  chr14   26730047       27528941     NR_110033  LOC101927062
13  chr14   26730047       27528941     NR_110041     MIR4307HG
14  chr14   26730047       27528941     NR_110556  LOC102724890
15  chr15   85629993       85753935  NM_001243137         PDE8A
17  chr15   85629993       85753935     NR_049748     LOC642423
18  chr19    1842185        1970040  NM_001130111       ABHD17A
19  chr19    1842185        1970040     NM_001319       CSNK1G2
20  chr19    1842185        1970040  NM_001329539        SCAMP4
21  chr19    1842185        1970040     NM_020695         REXO1
22  chr19    1842185        1970040     NM_031918         KLF16
23  chr19    1842185        1970040     NM_138422         ADAT3
24  chr19    1842185        1970040     NR_033400   CSNK1G2-AS1
25   chr8    6785119        6921628  NM_001302265        DEFA1B
26   chr8    6785119        6921628     NM_001925         DEFA4
27   chr8    6785119        6921628     NM_004084         DEFA1
29   chr8    6785119        6921628     NM_005217         DEFA3
30   chr8    6785119        6921628     NM_021010         DEFA5
31   chr8    6785119        6921628     NR_029386       DEFA10P
32   chr8    6785119        6921628     NR_036686        DEFT1P
34   chr8    6785119        6921628     NR_073407        DEFA8P
35   chr8    6785119        6921628     NR_073408        DEFA9P
36   chr8    6785119        6921628     NR_073421       DEFA11P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12847945       12959280  NM_001009611       PRAMEF4
1    chr1   12847945       12959280  NM_001013631      HNRNPCL1
2    chr1   12847945       12959280  NM_001146181      HNRNPCL3
3    chr1   12847945       12959280  NM_001146344      PRAMEF11
4    chr1   12847945       12959280  NM_001294139       PRAMEF1
5    chr1   12847945       12959280  NM_001302551      HNRNPCL4
7    chr1   12847945       12959280     NM_023014       PRAMEF2
8   chr10   37444538       37802292     NM_052997      ANKRD30A
9   chr10   37444538       37802292     NR_104061     LINC00993
10  chr12   10631919       10966455  NM_001300739        MAGOHB
11  chr12   10631919       10966455     NM_003651          YBX3
13  chr12   10631919       10966455     NM_018423         STYK1
14  chr12   10631919       10966455     NM_023917        TAS2R9
15  chr12   10631919       10966455     NM_023918        TAS2R8
16  chr12   10631919       10966455     NM_023919        TAS2R7
17  chr12   10631919       10966455     NR_028045        KLRA1P
18  chr12   10631919       10966455     NR_120463  LOC101928162
19  chr14   21749978       21984369  NM_001163380         RAB2B
20  chr14   21749978       21984369  NM_001170629          CHD8
21  chr14   21749978       21984369  NM_001303523          TOX4
22  chr14   21749978       21984369     NM_007192       SUPT16H
23  chr14   21749978       21984369     NM_019852        METTL3
24  chr14   21749978       21984369     NM_020366       RPGRIP1
27  chr14   21749978       21984369     NR_002916        SNORD8
28  chr14   21749978       21984369     NR_003029        SNORD9
29  chr14   79582152       79809730  NM_001272020         NRXN3
32  chr14   79582152       79809730     NR_135159  LOC105370586
33  chr15   28701750       28823494     NR_033351       GOLGA8F
34  chr15   28701750       28823494     NR_033353       GOLGA8G
35  chr15   28701750       28823494     NR_039734     MIR4509-3
36  chr16   69958949       70074357  NM_001136214       CLEC18A
37  chr16   69958949       70074357  NM_001270453          WWP2
42  chr16   69958949       70074357     NR_003610       PDXDC2P
43  chr16   69958949       70074357     NR_029681        MIR140
44  chr16   69958949       70074357     NR_036265     MIR1972-2
45   chr5  109858269      109960122  NM_001039763       TMEM232
46   chr7  110674547      110913233  NM_001099658         LRRN3
47   chr7  110674547      110913233  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21710843       21976287  NM_001163380     RAB2B
1   chr14   21710843       21976287  NM_001170629      CHD8
2   chr14   21710843       21976287  NM_001303523      TOX4
3   chr14   21710843       21976287     NM_007192   SUPT16H
4   chr14   21710843       21976287     NM_019852    METTL3
5   chr14   21710843       21976287     NM_020366   RPGRIP1
7   chr14   21710843       21976287     NM_031314    HNRNPC
9   chr14   21710843       21976287     NR_002916    SNORD8
10  chr14   21710843       21976287     NR_003029    SNORD9
11   chr4   71352217       71971481     NM_000788       DCK
12   chr4   71352217       71971481  NM_001037442     RUFY3
13   chr4   71352217       71971481  NM_001098477     GRSF1
15   chr4   71352217       71971481  NM_001244766     MOB1B
17   chr4   71352217       71971481  NM_001286731      AMTN
22   chr4   71352217       71971481     NM_016519      AMBN
23   chr4   71352217       71971481     NM_020368      UTP3
24   chr4   71352217       71971481     NM_031889      ENAM
25   chr4   71352217       71971481     NM_144646    JCHAIN,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  143725086      143942818  NM_001123068     PPIAL4G
1    chr1  143725086      143942818  NM_001287385      FAM72C
2    chr1  143725086      143942818  NM_001345942      FAM72D
6    chr1  143725086      143942818     NR_104014   LINC01138
8   chr15   77828726       77936427  NM_001301186      LINGO1
18  chr15   77828726       77936427     NR_045123  LINGO1-AS1
19   chr9   39096935       39361205  NM_001085452   SPATA31A1
20   chr9   39096935       39361205     NM_033655     CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21845596       21998607  NM_001163380         RAB2B
1   chr14   21845596       21998607  NM_001170629          CHD8
2   chr14   21845596       21998607  NM_001303523          TOX4
3   chr14   21845596       21998607     NM_007192       SUPT16H
4   chr14   21845596       21998607     NM_019852        METTL3
7   chr14   21845596       21998607     NR_002916        SNORD8
8   chr14   21845596       21998607     NR_003029        SNORD9
9   chr14   21845596       21998607     NR_111966         SALL2
11  chr16   68588597       68725832  NM_001305204         ZFP90
13  chr16   68588597       68725832  NM_001317195          CDH3
14   chr2   97253302       97378025  NM_001115016        KANSL3
15   chr2   97253302       97378025  NM_001293083        FER1L5
16   chr2   97253302       97378025  NM_001322354        LMAN2L
19   chr6  162835020      163151196  NM_001080378         PACRG
21   chr6  162835020      163151196     NM_013988         PARK2
22   chr7   64036388       64170915  NM_001282360        ZNF107
23   chr7   64036388       64170915     NR_033245     LOC641746
24   chr7   64036388       64170915     NR_077227  LOC100128885
26   chr7   64036388       64170915     NR_106898       MIR6839
27   chr7  152334044      153751402  NM_001039350          DPP6
29   chr7  152334044      153751402     NM_005431         XRCC2
30   chr7  152334044      153751402     NM_020445        ACTR3B
32   chr7  152334044      153751402     NR_125776     LINC01287,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1   12805326       14553847  NM_001006624           PDPN
1    chr1   12805326       14553847  NM_001007257          PRDM2
2    chr1   12805326       14553847  NM_001009611        PRAMEF4
3    chr1   12805326       14553847  NM_001010847         LRRC38
4    chr1   12805326       14553847  NM_001010889        PRAMEF6
6    chr1   12805326       14553847  NM_001010890        PRAMEF9
7    chr1   12805326       14553847  NM_001012276        PRAMEF8
10   chr1   12805326       14553847  NM_001013407        PRAMEF5
12   chr1   12805326       14553847  NM_001013631       HNRNPCL1
13   chr1   12805326       14553847  NM_001024661       PRAMEF14
15   chr1   12805326       14553847  NM_001039361       PRAMEF10
17   chr1   12805326       14553847  NM_001080830       PRAMEF12
18   chr1   12805326       14553847  NM_001098376       PRAMEF15
20   chr1   12805326       14553847  NM_001099790       PRAMEF19
22   chr1   12805326       14553847  NM_001099850       PRAMEF18
24   chr1   12805326       14553847  NM_001099851       PRAMEF17
26   chr1   12805326       14553847  NM_001099852       PRAMEF20
28   chr1   12805326       14553847  NM_001100631       PRAMEF22
31   chr1   12805326       14553847  NM_001136561       HNRNPCL2
32   chr1   12805326       14553847  NM_001146181       HNRNPCL3
33   chr1   12805326       14553847  NM_001146344       PRAMEF11
34   chr1   12805326       14553847  NM_001291381      PRAMEF33P
36   chr1   12805326       14553847  NM_001294139        PRAMEF1
37   chr1   12805326       14553847  NM_001300891       PRAMEF27
40   chr1   12805326       14553847  NM_001302551       HNRNPCL4
41   chr1   12805326       14553847  NM_001306072       PRAMEF26
42   chr1   12805326       14553847  NM_001310134       PRAMEF25
46   chr1   12805326       14553847     NM_023014        PRAMEF2
47   chr1   12805326       14553847     NM_152290       C1orf158
49   chr1   12805326       14553847     NR_111945      PRAMEF36P
..    ...        ...            ...           ...            ...
60  chr16   14969658       15204540     NM_006985         NPIPA1
61  chr16   14969658       15204540     NM_014287          NOMO1
62  chr16   14969658       15204540     NR_036140      MIR3179-1
63  chr16   14969658       15204540     NR_036141      MIR3180-1
64  chr16   14969658       15204540     NR_036142      MIR3180-2
65  chr16   14969658       15204540     NR_103772   LOC100288162
66  chr16   14969658       15204540     NR_106970      MIR6511A3
67  chr16   14969658       15204540     NR_107060      MIR6770-2
68  chr16   14969658       15204540     NR_123721  PKD1P6-NPIPP1
70  chr16   14969658       15204540     NR_125434   LOC100505915
71  chr16   14969658       15204540     NR_128713      MIR3670-4
72  chr22   20090951       20504067  NM_001190326          DGCR8
73  chr22   20090951       20504067  NM_001242313       TMEM191B
74  chr22   20090951       20504067  NM_001243537        CCDC188
75  chr22   20090951       20504067  NM_001278639         RANBP1
78  chr22   20090951       20504067     NM_013373         ZDHHC8
79  chr22   20090951       20504067     NM_015672         RIMBP3
80  chr22   20090951       20504067     NM_022727         TRMT2A
81  chr22   20090951       20504067     NM_023004          RTN4R
82  chr22   20090951       20504067     NM_033257         DGCR6L
83  chr22   20090951       20504067     NR_003563        PI4KAP1
84  chr22   20090951       20504067     NR_026919      LINC00896
85  chr22   20090951       20504067     NR_031618        MIR1286
86  chr22   20090951       20504067     NR_038460      LOC284865
87  chr22   20090951       20504067     NR_106874        MIR6816
88  chr22   20090951       20504067     NR_136560        FAM230A
89  chr22   20090951       20504067     NR_136572   LOC101927859
90   chr4   56408411       56526451  NM_001267843          CLOCK
92   chr4   56408411       56526451     NM_006681            NMU
93   chr4   56408411       56526451     NM_152401          PDCL2

[64 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18391119       18515061  NM_001004060         NOMO2
1  chr16   18391119       18515061  NM_001282511        NPIPA8
2  chr16   18391119       18515061     NR_036140     MIR3179-1
3  chr16   18391119       18515061     NR_036142     MIR3180-2
4  chr16   18391119       18515061     NR_036144     MIR3180-3
5  chr16   18391119       18515061     NR_037442     MIR3670-1
6  chr16   18391119       18515061     NR_103772  LOC100288162
7  chr16   18391119       18515061     NR_106971     MIR6511A4
8  chr16   18391119       18515061     NR_107060     MIR6770-2
9   chr7  110596488      110726818  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21831595       21934918  NM_001163380         RAB2B
1   chr14   21831595       21934918  NM_001170629          CHD8
2   chr14   21831595       21934918     NM_007192       SUPT16H
5   chr14   21831595       21934918     NR_002916        SNORD8
6   chr14   21831595       21934918     NR_003029        SNORD9
7   chr14   21816646       21940543  NM_001163380         RAB2B
8   chr14   21816646       21940543  NM_001170629          CHD8
9   chr14   21816646       21940543     NM_007192       SUPT16H
10  chr14   21816646       21940543     NM_020366       RPGRIP1
13  chr14   21816646       21940543     NR_002916        SNORD8
14  chr14   21816646       21940543     NR_003029        SNORD9
15  chr22   17228564       17824243  NM_001037814          GAB4
16  chr22   17228564       17824243  NM_001163079         CECR6
17  chr22   17228564       17824243  NM_001282227         CECR1
19  chr22   17228564       17824243  NM_001289905        IL17RA
20  chr22   17228564       17824243     NM_017829         CECR5
23  chr22   17228564       17824243     NM_175878          XKR3
25  chr22   17228564       17824243     NR_003607       HSFY1P1
26  chr22   17228564       17824243     NR_015352         CECR7
27  chr22   17228564       17824243     NR_024482     CECR5-AS1
28  chr22   17228564       17824243     NR_038398         CECR3
29  chr22   17228564       17824243     NR_103793  LOC100996342
30  chr22   17228564       17824243     NR_134584  LOC101929350
31   chr9  132349949      132732617     NM_000113         TOR1A
32   chr9  132349949      132732617  NM_001286796         NTMT1
36   chr9  132349949      132732617     NM_004878         PTGES
37   chr9  132349949      132732617     NM_006676         USP20
38   chr9  132349949      132732617     NM_014506         TOR1B
39   chr9  132349949      132732617     NM_015033         FNBP1
40   chr9  132349949      132732617     NM_016307         PRRX2
41   chr9  132349949      132732617     NM_016520       C9orf78
42   chr9  132349949      132732617     NM_177999          ASB6
43   chr9  132349949      132732617     NM_199350       C9orf50
44   chr9  132349949      132732617     NR_106914       MIR6855
45   chr9  132349949      132732617     NR_132102     PRRX2-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   97361151       97661009     NM_000110      DPYD
1    chr1   97361151       97661009     NR_046590  DPYD-AS1
2    chr1  244978142      245098144  NM_001312871     COX20
4    chr1  244978142      245098144     NM_004501    HNRNPU
6    chr1  244978142      245098144     NR_132782  SNORA100
7   chr12   72679890       72840421     NM_013381     TRHDE
8   chr14   21769031       22010100  NM_001163380     RAB2B
9   chr14   21769031       22010100  NM_001170629      CHD8
10  chr14   21769031       22010100  NM_001303523      TOX4
11  chr14   21769031       22010100     NM_007192   SUPT16H
12  chr14   21769031       22010100     NM_019852    METTL3
13  chr14   21769031       22010100     NM_020366   RPGRIP1
16  chr14   21769031       22010100     NR_002916    SNORD8
17  chr14   21769031       22010100     NR_003029    SNORD9
18  chr14   21769031       22010100     NR_111966     SALL2
20   chr8   48500265       48629982  NM_001080394     SPIDR
21   chr9     141969         610107  NM_001145355     CBWD1
22   chr9     141969         610107  NM_001190458     DOCK8
23   chr9     141969         610107  NM_001256876     KANK1
25   chr9     141969         610107     NM_152569   C9orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142490787      143786065  NM_001123068       PPIAL4G
1    chr1  142490787      143786065     NR_046228   ANKRD20A12P
2    chr1  142490787      143786065     NR_104014     LINC01138
3    chr1  142490787      143786065     NR_106967       MIR6077
4    chr1  142490787      143786065     NR_110761  LOC102723769
5    chr1  142490787      143786065     NR_111930  LOC100132057
6   chr12     661414         941719  NM_001294345         NINJ2
9   chr12     661414         941719     NM_018979          WNK1
10  chr12     661414         941719     NM_173593      B4GALNT3
11  chr12     661414         941719     NR_122124  LOC100049716
12  chr12     661414         941719     NR_134624  LOC105369595
13  chr20   14825292       14954250     NM_080676       MACROD2
14  chr20   14825292       14954250     NR_037841   MACROD2-AS1
16   chr4   69307206       69412825     NM_001077       UGT2B17
17   chr4   69307206       69412825     NM_014058     TMPRSS11E
18   chr5   63861047       63997975  NM_001029875        RGS7BP
19   chr5   63861047       63997975  NM_001164442       FAM159B
21   chr8    6951179        7201915  NM_001256873       USP17L1
22   chr8    6951179        7201915  NM_001256874       USP17L4
23   chr8    6951179        7201915     NR_003668    DEFB109P1B
24   chr8    6951179        7201915     NR_027000     LINC00965
27   chr8    6951179        7201915     NR_027423        FAM66B
28   chr9   14961879       15099612     NR_003920     LOC389705,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21659003       22152211  NM_001001912      OR4E2
1   chr14   21659003       22152211  NM_001005465     OR10G3
2   chr14   21659003       22152211  NM_001005466     OR10G2
3   chr14   21659003       22152211  NM_001163380      RAB2B
4   chr14   21659003       22152211  NM_001170629       CHD8
5   chr14   21659003       22152211  NM_001303523       TOX4
6   chr14   21659003       22152211  NM_001317107      OR4E1
7   chr14   21659003       22152211     NM_007192    SUPT16H
8   chr14   21659003       22152211     NM_019852     METTL3
9   chr14   21659003       22152211     NM_020366    RPGRIP1
11  chr14   21659003       22152211     NM_031314     HNRNPC
13  chr14   21659003       22152211     NR_002916     SNORD8
14  chr14   21659003       22152211     NR_003029     SNORD9
15  chr14   21659003       22152211     NR_038970  LINC00641
17  chr14   21659003       22152211     NR_111966      SALL2
19   chr2  108774798      108973561  NM_001008743    SULT1C3
20   chr2  108774798      108973561     NM_001056    SULT1C2
22   chr2  108774798      108973561     NR_037191  SULT1C2P1
23   chr2  108774798      108973561     NR_131251  LINC01594,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48370982       48626382  NM_001005512        OR4A47
1   chr11   48370982       48626382  NM_001005513        OR4C45
2   chr13   87968165       88731755     NM_015567       SLITRK5
3   chr13   87968165       88731755     NR_033829     MIR4500HG
4   chr13   87968165       88731755     NR_039722       MIR4500
5   chr13   87968165       88731755     NR_104059     LINC00397
6   chr14   21759104       23527273  NM_001001912         OR4E2
7   chr14   21759104       23527273  NM_001005465        OR10G3
8   chr14   21759104       23527273  NM_001005466        OR10G2
9   chr14   21759104       23527273  NM_001039619         PRMT5
10  chr14   21759104       23527273  NM_001099780        PSMB11
11  chr14   21759104       23527273  NM_001126105        SLC7A7
13  chr14   21759104       23527273  NM_001130706      C14orf93
14  chr14   21759104       23527273  NM_001130725         PSMB5
16  chr14   21759104       23527273  NM_001163380         RAB2B
17  chr14   21759104       23527273  NM_001170629          CHD8
19  chr14   21759104       23527273  NM_001289097         AJUBA
20  chr14   21759104       23527273  NM_001303523          TOX4
21  chr14   21759104       23527273  NM_001317107         OR4E1
22  chr14   21759104       23527273  NM_001318870        MRPL52
23  chr14   21759104       23527273  NM_001329226         LRP10
24  chr14   21759104       23527273     NM_001344          DAD1
25  chr14   21759104       23527273     NM_004995         MMP14
26  chr14   21759104       23527273     NM_005015         OXA1L
27  chr14   21759104       23527273     NM_007192       SUPT16H
28  chr14   21759104       23527273     NM_017815         HAUS4
29  chr14   21759104       23527273     NM_018107         RBM23
30  chr14   21759104       23527273     NM_019852        METTL3
31  chr14   21759104       23527273     NM_020366       RPGRIP1
33  chr14   21759104       23527273     NM_022060         ABHD4
34  chr14   21759104       23527273     NM_022478         CDH24
37  chr14   21759104       23527273     NM_173527          REM2
39  chr14   21759104       23527273     NR_002916        SNORD8
40  chr14   21759104       23527273     NR_003029        SNORD9
41  chr14   21759104       23527273     NR_039856       MIR4707
43  chr14   21759104       23527273     NR_110002  LOC101926933
44  chr14   21759104       23527273     NR_111966         SALL2
46  chr14   21759104       23527273     NR_120599     PRMT5-AS1
47   chr4   65620327       65863355     NR_033976     LOC401134,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   37855835       38018556     NR_135110  LOC105376633
1   chr22   19012615       19790536     NM_000407         GP1BB
2   chr22   19012615       19790536  NM_001009939         SEPT5
3   chr22   19012615       19790536  NM_001035247         UFD1L
4   chr22   19012615       19790536  NM_001166242      C22orf39
5   chr22   19012615       19790536  NM_001178010         CDC45
6   chr22   19012615       19790536  NM_001184781         DGCR2
7   chr22   19012615       19790536  NM_001256534       SLC25A1
8   chr22   19012615       19790536  NM_001318151        MRPL40
10  chr22   19012615       19790536     NM_001835        CLTCL1
12  chr22   19012615       19790536     NM_003277         CLDN5
13  chr22   19012615       19790536     NM_003325          HIRA
15  chr22   19012615       19790536     NM_005315          GSC2
17  chr22   19012615       19790536     NM_005992          TBX1
18  chr22   19012615       19790536     NM_022719        DGCR14
19  chr22   19012615       19790536     NM_053004         GNB1L
20  chr22   19012615       19790536     NM_053006         TSSK2
24  chr22   19012615       19790536     NR_024157        DGCR11
25  chr22   19012615       19790536     NR_024381     LINC00895
26  chr22   19012615       19790536     NR_037611   SEPT5-GP1BB
28  chr22   19012615       19790536     NR_103767     LINC01311
29  chr22   19012615       19790536     NR_110533         DGCR5,   chrom  cnv_start  cnv_terminate    tx_name gene_name
0  chr7    8673383        8953688  NM_152745     NXPH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143975754      144154892  NM_001278267        NBPF20
1   chr14   21682567       21794687     NM_020366       RPGRIP1
2   chr14   21682567       21794687     NM_031314        HNRNPC
3   chr15   30229090       32756759  NM_001039841     ARHGAP11B
4   chr15   30229090       32756759  NM_001146094          FAN1
6   chr15   30229090       32756759  NM_001190455        CHRNA7
7   chr15   30229090       32756759  NM_001243538     LOC283710
8   chr15   30229090       32756759  NM_001252020         TRPM1
11  chr15   30229090       32756759  NM_001277308       GOLGA8O
12  chr15   30229090       32756759  NM_001282472       GOLGA8J
13  chr15   30229090       32756759  NM_001282484       GOLGA8R
14  chr15   30229090       32756759  NM_001282490       GOLGA8H
15  chr15   30229090       32756759  NM_001282493       GOLGA8K
16  chr15   30229090       32756759  NM_001301025          TJP1
17  chr15   30229090       32756759  NM_001302461         KLF13
18  chr15   30229090       32756759  NM_001329907        OTUD7A
21  chr15   30229090       32756759     NM_017762        MTMR10
23  chr15   30229090       32756759     NM_139320      CHRFAM7A
24  chr15   30229090       32756759     NR_026771  DKFZP434L187
25  chr15   30229090       32756759     NR_026858        ULK4P1
27  chr15   30229090       32756759     NR_026859        ULK4P3
29  chr15   30229090       32756759     NR_029624        MIR211
30  chr15   30229090       32756759     NR_033933       GOLGA8T
31  chr15   30229090       32756759     NR_038253  LOC100288637
33  chr15   30229090       32756759     NR_072991      HERC2P10
34  chr15   30229090       32756759     NR_135834  LOC102725022
35   chr2  185208078      186625436     NM_173651         FSIP2
36   chr2  185208078      186625436     NM_194250       ZNF804A
37   chr2  185208078      186625436     NR_039638     MIR548AE1
38   chr2  185208078      186625436     NR_110214  LOC101927196
41   chr2  185208078      186625436     NR_136319  LOC105373782
42   chr3   36082421       37372084     NM_000249          MLH1
43   chr3   36082421       37372084  NM_001134369       LRRFIP2
45   chr3   36082421       37372084  NM_001172713        GOLGA4
47   chr3   36082421       37372084     NM_003149          STAC
49   chr3   36082421       37372084     NM_014805      EPM2AIP1
50   chr3   36082421       37372084     NM_014831        TRANK1
51   chr3   36082421       37372084     NM_033403         DCLK3
52   chr4   97880244       98605575     NM_174952         STPG2
53   chr4   97880244       98605575     NR_102713     STPG2-AS1
54   chr8  100589957      101257932  NM_001029860        FBXO43
55   chr8  100589957      101257932  NM_001286692         RGS22
57   chr8  100589957      101257932     NM_003114         SPAG1
58   chr8  100589957      101257932     NM_004374         COX6C
59   chr8  100589957      101257932     NM_005034        POLR2K
60   chr8  100589957      101257932     NM_017890        VPS13B
62   chr8  100589957      101257932     NR_031675      MIR1273A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143516093      144362023  NM_001123068       PPIAL4G
1    chr1  143516093      144362023  NM_001278267        NBPF20
2    chr1  143516093      144362023  NM_001287385        FAM72C
3    chr1  143516093      144362023  NM_001345942        FAM72D
7    chr1  143516093      144362023     NR_024511     LINC00623
9    chr1  143516093      144362023     NR_104014     LINC01138
10   chr1  143516093      144362023     NR_106967       MIR6077
11   chr1  143516093      144362023     NR_111930  LOC100132057
12   chr1  143516093      144362023     NR_111953     LINC00869
14  chr10   56488981       56658079  NM_001142770        PCDH15
17  chr12   71456787       71585466     NM_004616        TSPAN8
18  chr22   17170503       17306267     NM_175878          XKR3
19  chr22   17170503       17306267     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21859145       22009500  NM_001163380         RAB2B
1   chr14   21859145       22009500  NM_001170629          CHD8
2   chr14   21859145       22009500  NM_001303523          TOX4
3   chr14   21859145       22009500     NM_019852        METTL3
6   chr14   21859145       22009500     NR_002916        SNORD8
7   chr14   21859145       22009500     NR_003029        SNORD9
8   chr14   21859145       22009500     NR_111966         SALL2
10  chr15   28272350       29946777     NM_000275          OCA2
11  chr15   28272350       29946777  NM_001130414         APBA2
12  chr15   28272350       29946777  NM_001282468       GOLGA8M
14  chr15   28272350       29946777     NM_004667         HERC2
15  chr15   28272350       29946777     NM_015307      FAM189A1
16  chr15   28272350       29946777     NM_138704        NSMCE3
17  chr15   28272350       29946777     NR_026589       WHAMMP2
18  chr15   28272350       29946777     NR_033351       GOLGA8F
20  chr15   28272350       29946777     NR_033353       GOLGA8G
22  chr15   28272350       29946777     NR_036443       HERC2P9
23  chr15   28272350       29946777     NR_036475  LOC100289656
24  chr15   28272350       29946777     NR_037599     PDCD6IPP2
25  chr15   28272350       29946777     NR_039734     MIR4509-3
27  chr15   28272350       29946777     NR_047567     GOLGA6L7P
28  chr15   28637153       28805048     NR_033351       GOLGA8F
29  chr15   28637153       28805048     NR_033353       GOLGA8G
31  chr15   28637153       28805048     NR_039734     MIR4509-3
33   chr4  129682217      129847948  NM_001287437         JADE1
39   chr4  129682217      129847948     NM_144643         SCLT1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21760114       21871630  NM_001170629          CHD8
1   chr14   21760114       21871630     NM_007192       SUPT16H
2   chr14   21760114       21871630     NM_020366       RPGRIP1
4   chr14   21760114       21871630     NR_002916        SNORD8
5   chr14   21760114       21871630     NR_003029        SNORD9
6    chr2   50750124       50885888  NM_001330082         NRXN1
7    chr2  130534845      130758150     NM_032144         RAB6C
8    chr2  130534845      130758150     NR_026740     LOC389033
9    chr2  130534845      130758150     NR_036537     RAB6C-AS1
10   chr2  130534845      130758150     NR_110285  LOC101927924,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143677403      143783107  NM_001123068       PPIAL4G
1    chr1  143677403      143783107     NR_104014     LINC01138
2    chr1  143677403      143783107     NR_111930  LOC100132057
3    chr1  237500840      237840324     NM_001035          RYR2
4    chr1  237500840      237840324     NR_039626       MIR4428
5   chr12   85493447       85595507  NM_001079910        LRRIQ1
6   chr14   21883058       21983217  NM_001163380         RAB2B
7   chr14   21883058       21983217  NM_001170629          CHD8
8   chr14   21883058       21983217  NM_001303523          TOX4
9   chr14   21883058       21983217     NM_019852        METTL3
12  chr16   16445005       16686074  NM_001282511        NPIPA8
13  chr16   16445005       16686074     NR_106971     MIR6511A4
14  chr16   68627759       68785077  NM_001317184          CDH1
15  chr16   68627759       68785077  NM_001317195          CDH3
16  chr16   68627759       68785077     NR_106988     MIR7641-2
17  chr17   78159938       78508249     NM_000199          SGSH
18  chr17   78159938       78508249  NM_001164637         ENDOV
20  chr17   78159938       78508249  NM_001166349      SLC26A11
21  chr17   78159938       78508249  NM_001256071        RNF213
22  chr17   78159938       78508249  NM_001257970        CARD14
23  chr17   78159938       78508249     NM_002522         NPTX1
27  chr17   78159938       78508249     NR_029376  LOC100294362
28  chr17   78159938       78508249     NR_039883       MIR4730
30   chr5   23860647       24151627     NR_131245       C5orf17
31   chr7  110447949      110548678  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63105198       63561407     NR_047029  LINC00448
3   chr14   21830471       21971292  NM_001163380      RAB2B
4   chr14   21830471       21971292  NM_001170629       CHD8
5   chr14   21830471       21971292  NM_001303523       TOX4
6   chr14   21830471       21971292     NM_007192    SUPT16H
7   chr14   21830471       21971292     NM_019852     METTL3
10  chr14   21830471       21971292     NR_002916     SNORD8
11  chr14   21830471       21971292     NR_003029     SNORD9
12  chr18   35141906       35706428     NM_020180      CELF4
13  chr18   35141906       35706428     NR_036202    MIR4318
14  chr18   35146444       35327905     NR_036202    MIR4318,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21577278       21880963  NM_001004731     OR5AU1
1   chr14   21577278       21880963  NM_001170629       CHD8
2   chr14   21577278       21880963     NM_007192    SUPT16H
3   chr14   21577278       21880963     NM_020366    RPGRIP1
5   chr14   21577278       21880963     NM_031314     HNRNPC
6   chr14   21577278       21880963     NR_002916     SNORD8
7   chr14   21577278       21880963     NR_003029     SNORD9
8   chr14   21577278       21880963     NR_038970  LINC00641
10   chr2  110129325      110336681  NM_001099289     SH3RF3
11   chr2  110129325      110336681  NM_001321504     SEPT10
13  chr21   22372899       22847539     NM_004540      NCAM2
14   chr9   39104824       39241457     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   83927826       84034759  NM_001010848      NRG3
2   chr10   83927826       84034759     NR_120666  NRG3-AS1
3   chr14   21913725       22046884  NM_001005465    OR10G3
4   chr14   21913725       22046884  NM_001163380     RAB2B
5   chr14   21913725       22046884  NM_001303523      TOX4
6   chr14   21913725       22046884     NM_019852    METTL3
8   chr14   21913725       22046884     NR_111966     SALL2
10   chr2   35429952       35787434     NR_039629  MIR548AD
11   chr4  165960486      166077536  NM_001100389   TMEM192
12   chr4  165960486      166077536     NM_152620    TRIM60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81495861       81859490  NM_001270367       TMEM254
3   chr10   81495861       81859490     NM_003019         SFTPD
4   chr10   81495861       81859490     NR_002724         MBL1P
5   chr10   81495861       81859490     NR_027431   TMEM254-AS1
6   chr10   81495861       81859490     NR_029407     LOC642361
7   chr10   81495861       81859490     NR_033857       BMS1P21
8   chr10   81495861       81859490     NR_120611    NUTM2B-AS1
11  chr13   19711334       19858154     NM_006001        TUBA3C
12  chr13   19711334       19858154     NR_027248     ANKRD26P3
13  chr13   19711334       19858154     NR_126054  LOC101928697
14  chr22   19862256       20314967     NM_000754          COMT
17  chr22   19862256       20314967  NM_001190326         DGCR8
18  chr22   19862256       20314967  NM_001243537       CCDC188
19  chr22   19862256       20314967  NM_001278639        RANBP1
22  chr22   19862256       20314967  NM_001282512        TXNRD2
23  chr22   19862256       20314967  NM_001283116        TANGO2
26  chr22   19862256       20314967     NM_001670         ARVCF
29  chr22   19862256       20314967     NM_013373        ZDHHC8
30  chr22   19862256       20314967     NM_022727        TRMT2A
31  chr22   19862256       20314967     NM_023004         RTN4R
32  chr22   19862256       20314967     NM_033257        DGCR6L
33  chr22   19862256       20314967     NR_026919     LINC00896
34  chr22   19862256       20314967     NR_029706        MIR185
35  chr22   19862256       20314967     NR_031618       MIR1286
36  chr22   19862256       20314967     NR_031706       MIR1306
37  chr22   19862256       20314967     NR_037412       MIR3618
38  chr22   19862256       20314967     NR_038460     LOC284865
39  chr22   19862256       20314967     NR_039918       MIR4761
40  chr22   19862256       20314967     NR_106874       MIR6816
41   chr4    8558406        8781711  NM_001014447           CPZ
42   chr4    8558406        8781711     NM_080819         GPR78,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  244978426      245103247  NM_001312871        COX20
2    chr1  244978426      245103247     NM_004501       HNRNPU
4    chr1  244978426      245103247     NR_132782     SNORA100
5   chr11   81759008       81890021     NR_120571    MIR4300HG
6   chr15   20656495       20834205  NM_001145004     GOLGA6L6
7   chr15   20656495       20834205     NR_027411     GOLGA8CP
8   chr15   20656495       20834205     NR_036432      HERC2P3
9   chr17   56183439       56336644     NM_000502          EPX
10  chr17   56183439       56336644  NM_001004707        OR4D2
11  chr17   56183439       56336644  NM_001165927         MKS1
13  chr17   56183439       56336644     NM_012374        OR4D1
14  chr17   56183439       56336644     NR_002307       MSX2P1
15  chr17   56183439       56336644     NR_027647          LPO
16  chr20   14791145       15997225  NM_001033087      MACROD2
18  chr20   14791145       15997225     NR_037841  MACROD2-AS1
20  chr20   14791145       15997225     NR_130924    LOC613266
22   chr3  162851563      163857760     NR_033945    LINC01192,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   59936224       60254064  NM_001320674         BNIP2
2   chr15   59936224       60254064  NM_001320929        GTF2A2
5   chr16   16287936       16581921  NM_001004067         NOMO3
6   chr16   16287936       16581921  NM_001079528         ABCC6
8   chr16   16287936       16581921  NM_001282511        NPIPA8
9   chr16   16287936       16581921     NR_036140     MIR3179-1
10  chr16   16287936       16581921     NR_036141     MIR3180-1
11  chr16   16287936       16581921     NR_036142     MIR3180-2
12  chr16   16287936       16581921     NR_036447        PKD1P1
13  chr16   16287936       16581921     NR_103772  LOC100288162
14  chr16   16287936       16581921     NR_106766     MIR6511A1
15  chr16   16287936       16581921     NR_106971     MIR6511A4
16  chr16   16287936       16581921     NR_107060     MIR6770-2
17  chr16   16287936       16581921     NR_128713     MIR3670-4
18   chr7   89007255       90305777  NM_001040665        STEAP2
20   chr7   89007255       90305777  NM_001160138        CFAP69
21   chr7   89007255       90305777  NM_001185073        CLDN12
23   chr7   89007255       90305777  NM_001287135         CDK14
24   chr7   89007255       90305777     NM_012449        STEAP1
25   chr7   89007255       90305777     NM_033107       GTPBP10
26   chr7   89007255       90305777     NR_003551     DPY19L2P4
27   chr7   89007255       90305777     NR_102424  LOC101409256
28   chr7   89007255       90305777     NR_110029    STEAP2-AS1
29   chr7   89007255       90305777     NR_110085  LOC101927446,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21783861       21973713  NM_001163380         RAB2B
1   chr14   21783861       21973713  NM_001170629          CHD8
2   chr14   21783861       21973713  NM_001303523          TOX4
3   chr14   21783861       21973713     NM_007192       SUPT16H
4   chr14   21783861       21973713     NM_019852        METTL3
5   chr14   21783861       21973713     NM_020366       RPGRIP1
8   chr14   21783861       21973713     NR_002916        SNORD8
9   chr14   21783861       21973713     NR_003029        SNORD9
10  chr15   28804268       29084573  NM_001282468       GOLGA8M
11  chr15   28804268       29084573     NR_026589       WHAMMP2
12  chr15   28804268       29084573     NR_036443       HERC2P9
13  chr15   28804268       29084573     NR_036475  LOC100289656
14  chr15   28804268       29084573     NR_037599     PDCD6IPP2
15   chr2   50770764       50874362  NM_001330082         NRXN1
16   chr2  131959419      132087274  NM_001083538         POTEE
17   chr2  131959419      132087274     NR_030728     LOC440910
18   chr2  236686818      236881057  NM_001244888         AGAP1
20   chr3   24592773       25887304     NM_000965          RARB
21   chr3   24592773       25887304     NM_001068         TOP2B
22   chr3   24592773       25887304  NM_001145293         NGLY1
28   chr3   24592773       25887304     NR_026937          OXSM
29   chr3   24592773       25887304     NR_039644       MIR4442
30   chr3   24592773       25887304     NR_134933  LOC105376997
31   chr3  155979910      156221960  NM_001308217        KCNAB1
36   chr3  155979910      156221960     NR_046618    KCNAB1-AS1
37   chr5   63853443       63959037  NM_001029875        RGS7BP,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21805647       22403054  NM_001001912     OR4E2
1   chr14   21805647       22403054  NM_001005465    OR10G3
2   chr14   21805647       22403054  NM_001005466    OR10G2
3   chr14   21805647       22403054  NM_001163380     RAB2B
4   chr14   21805647       22403054  NM_001170629      CHD8
5   chr14   21805647       22403054  NM_001303523      TOX4
6   chr14   21805647       22403054  NM_001317107     OR4E1
7   chr14   21805647       22403054     NM_007192   SUPT16H
8   chr14   21805647       22403054     NM_019852    METTL3
9   chr14   21805647       22403054     NM_020366   RPGRIP1
12  chr14   21805647       22403054     NR_002916    SNORD8
13  chr14   21805647       22403054     NR_003029    SNORD9
14  chr14   21805647       22403054     NR_111966     SALL2
16   chr2   50767619       50869664  NM_001330082     NRXN1
17   chr6  162798058      163192882  NM_001080378     PACRG
19   chr6  162798058      163192882     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21928569       22035502  NM_001163380         RAB2B
1   chr14   21928569       22035502  NM_001303523          TOX4
2   chr14   21928569       22035502     NM_019852        METTL3
4   chr14   21928569       22035502     NR_111966         SALL2
6   chr16   76337869       76483976  NM_001322181       CNTNAP4
8    chr6  140393532      140695824     NR_037441       MIR3668
9    chr6  140393532      140695824     NR_121622  LOC100507477
10   chr8  111950623      112094334     NR_125416     LINC01608
12   chr9   67188315       67299421     NR_002817        AQP7P1
13   chr9   67188315       67299421     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21771905       22470615  NM_001001912      OR4E2
1   chr14   21771905       22470615  NM_001005465     OR10G3
2   chr14   21771905       22470615  NM_001005466     OR10G2
3   chr14   21771905       22470615  NM_001163380      RAB2B
4   chr14   21771905       22470615  NM_001170629       CHD8
5   chr14   21771905       22470615  NM_001303523       TOX4
6   chr14   21771905       22470615  NM_001317107      OR4E1
7   chr14   21771905       22470615     NM_007192    SUPT16H
8   chr14   21771905       22470615     NM_019852     METTL3
9   chr14   21771905       22470615     NM_020366    RPGRIP1
12  chr14   21771905       22470615     NR_002916     SNORD8
13  chr14   21771905       22470615     NR_003029     SNORD9
14  chr14   21771905       22470615     NR_111966      SALL2
16  chr16   29498093       29618905     NR_049833  MIR3680-2
17  chr16   29498093       29618905     NR_135305     SMG1P2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   13009958       13142756  NM_001013407     PRAMEF5
1    chr1   13009958       13142756  NM_001099850    PRAMEF18
2    chr1   13009958       13142756  NM_001100631    PRAMEF22
3    chr1   13009958       13142756  NM_001306072    PRAMEF26
4    chr1   13009958       13142756  NM_001310134    PRAMEF25
5   chr14   21816512       22205267  NM_001001912       OR4E2
6   chr14   21816512       22205267  NM_001005465      OR10G3
7   chr14   21816512       22205267  NM_001005466      OR10G2
8   chr14   21816512       22205267  NM_001163380       RAB2B
9   chr14   21816512       22205267  NM_001170629        CHD8
10  chr14   21816512       22205267  NM_001303523        TOX4
11  chr14   21816512       22205267  NM_001317107       OR4E1
12  chr14   21816512       22205267     NM_007192     SUPT16H
13  chr14   21816512       22205267     NM_019852      METTL3
14  chr14   21816512       22205267     NM_020366     RPGRIP1
17  chr14   21816512       22205267     NR_002916      SNORD8
18  chr14   21816512       22205267     NR_003029      SNORD9
19  chr14   21816512       22205267     NR_111966       SALL2
21   chr2   95454699       96117718  NM_001034914      KCNIP3
22   chr2   95454699       96117718  NM_001291605        ZNF2
23   chr2   95454699       96117718  NM_001318005      ZNF514
24   chr2   95454699       96117718  NM_001321070       PROM2
25   chr2   95454699       96117718  NM_001321995       MRPS5
27   chr2   95454699       96117718     NM_016044      FAHD2A
28   chr2   95454699       96117718     NM_022439         MAL
30   chr2   95454699       96117718     NM_144705       TEKT4
31   chr2   95454699       96117718     NR_003366  ANKRD20A8P
32   chr2   95454699       96117718     NR_037597   LOC442028,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   83536812       83935031  NM_001142699       DLG2
4    chr3    4174995        4584291  NM_001164675      SUMF1
5    chr3    4174995        4584291  NM_001168272      ITPR1
6    chr3    4174995        4584291  NM_001243723     SETMAR
8    chr3    4174995        4584291     NR_108075  ITPR1-AS1
9    chr3   60417684       60538501  NM_001320899       FHIT
10   chr7  110553720      110784499  NM_001099658      LRRN3
11   chr7  110553720      110784499  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  102409063      102718804     NR_110211      OLFM3
1   chr14   21893193       22009595  NM_001163380      RAB2B
2   chr14   21893193       22009595  NM_001170629       CHD8
3   chr14   21893193       22009595  NM_001303523       TOX4
4   chr14   21893193       22009595     NM_019852     METTL3
7   chr14   21893193       22009595     NR_111966      SALL2
9    chr4   16239666       16341396     NR_027696  TAPT1-AS1
10   chr7  146074310      146317588     NM_014141    CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  220016550      220305259  NM_001286151       BPNT1
1    chr1  220016550      220305259     NM_004446        EPRS
2    chr1  220016550      220305259     NM_018060       IARS2
3    chr1  220016550      220305259     NR_002753     RNU5F-1
4    chr1  220016550      220305259     NR_029628      MIR215
5    chr1  220016550      220305259     NR_029711    MIR194-1
6    chr1  220016550      220305259     NR_046437    SLC30A10
7   chr10   88987013       89088866  NM_001099338      NUTM2A
8   chr10   88987013       89088866     NR_024397  NUTM2A-AS1
9   chr16   18496323       18844244  NM_001004060       NOMO2
10  chr16   18496323       18844244     NM_001019      RPS15A
11  chr16   18496323       18844244  NM_001313858     ARL6IP1
12  chr16   18496323       18844244     NM_015092        SMG1
14  chr16   18496323       18844244     NR_003569     ABCC6P1
15  chr16   18496323       18844244     NR_036140   MIR3179-1
16  chr16   18496323       18844244     NR_037442   MIR3670-1
17  chr16   76750037       76938113     NR_039870     MIR4719,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67691470       67841185  NM_001127384        CTNNA3
2   chr11  134222181      134415634     NM_054025        B3GAT1
3   chr11  134222181      134415634     NM_138342        GLB1L2
4   chr11  134222181      134415634     NR_033852     LOC283177
5   chr16   18236631       18696413  NM_001004060         NOMO2
6   chr16   18236631       18696413  NM_001282511        NPIPA8
7   chr16   18236631       18696413     NR_003569       ABCC6P1
8   chr16   18236631       18696413     NR_036140     MIR3179-1
9   chr16   18236631       18696413     NR_036142     MIR3180-2
10  chr16   18236631       18696413     NR_036144     MIR3180-3
11  chr16   18236631       18696413     NR_037442     MIR3670-1
12  chr16   18236631       18696413     NR_103772  LOC100288162
13  chr16   18236631       18696413     NR_106971     MIR6511A4
14  chr16   18236631       18696413     NR_107060     MIR6770-2
15  chr16   21380465       21562221     NM_130464        NPIPB3
16  chr16   21380465       21562221     NR_002594      SLC7A5P2
17  chr16   21380465       21562221     NR_024456  LOC100190986
18  chr16   21380465       21562221     NR_027155        SMG1P3
19  chr16   21380465       21562221     NR_045011       SNX29P1
20  chr16   21380465       21562221     NR_049833     MIR3680-2
21   chr7  124843290      125002846     NR_110183  LOC101928254
22   chr7  124843290      125002846     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37408432       37676944     NM_052997      ANKRD30A
1   chr10   37408432       37676944     NR_104061     LINC00993
2   chr16   18478396       19143317  NM_001004060         NOMO2
3   chr16   18478396       19143317     NM_001019        RPS15A
4   chr16   18478396       19143317  NM_001160364          TMC7
5   chr16   18478396       19143317  NM_001190983          COQ7
7   chr16   18478396       19143317  NM_001313858       ARL6IP1
9   chr16   18478396       19143317     NM_015092          SMG1
12  chr16   18478396       19143317     NR_003569       ABCC6P1
13  chr16   18478396       19143317     NR_028028      ITPRIPL2
14  chr16   18478396       19143317     NR_036140     MIR3179-1
15  chr16   18478396       19143317     NR_036142     MIR3180-2
16  chr16   18478396       19143317     NR_036144     MIR3180-3
17  chr16   18478396       19143317     NR_037442     MIR3670-1
18  chr16   18478396       19143317     NR_119379  LOC102723385
20  chr22   17255741       17388101     NM_175878          XKR3
21  chr22   17255741       17388101     NR_003607       HSFY1P1
22   chr7   64081383       64219066  NM_001282360        ZNF107
24   chr7   64081383       64219066     NR_106898       MIR6839
25   chr8  110248806      110381634  NM_001128211        NUDCD1
26   chr8  110248806      110381634  NM_001193557          ENY2
28   chr8  110248806      110381634     NM_177531       PKHD1L1
29   chr9   28527767       28628531  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   37632600       37759518  NM_001171170       SLC25A21
1   chr14   37632600       37759518  NM_001195296         MIPOL1
2   chr14   37632600       37759518     NR_033240   SLC25A21-AS1
3   chr16   14976787       15807002  NM_001040113          MYH11
4   chr16   14976787       15807002  NM_001128423         MPV17L
5   chr16   14976787       15807002  NM_001142469       C16orf45
6   chr16   14976787       15807002  NM_001143979           NDE1
7   chr16   14976787       15807002  NM_001184998       KIAA0430
8   chr16   14976787       15807002  NM_001270767          NTAN1
9   chr16   14976787       15807002  NM_001277325         NPIPA5
10  chr16   14976787       15807002  NM_001285445         PDXDC1
15  chr16   14976787       15807002  NM_001301064           RRN3
17  chr16   14976787       15807002     NM_006985         NPIPA1
18  chr16   14976787       15807002     NM_014287          NOMO1
21  chr16   14976787       15807002     NR_030159         MIR484
22  chr16   14976787       15807002     NR_036140      MIR3179-1
23  chr16   14976787       15807002     NR_036141      MIR3180-1
24  chr16   14976787       15807002     NR_036142      MIR3180-2
25  chr16   14976787       15807002     NR_037466      MIR3180-4
26  chr16   14976787       15807002     NR_103772   LOC100288162
27  chr16   14976787       15807002     NR_106761        MIR6506
28  chr16   14976787       15807002     NR_106775      MIR6511B1
29  chr16   14976787       15807002     NR_106965      MIR6511B2
30  chr16   14976787       15807002     NR_106970      MIR6511A3
31  chr16   14976787       15807002     NR_107060      MIR6770-2
32  chr16   14976787       15807002     NR_123721  PKD1P6-NPIPP1
34  chr16   14976787       15807002     NR_125434   LOC100505915
35  chr16   14976787       15807002     NR_128713      MIR3670-4
36   chr3     655809         898359     NR_110118      LINC01266
37   chr7   64110462       64223652  NM_001282360         ZNF107
39   chr7   64110462       64223652     NR_106898        MIR6839
40   chr9   41437683       42727346  NM_001012419      ANKRD20A3
41   chr9   41437683       42727346  NM_001012421      ANKRD20A2
42   chr9   41437683       42727346  NM_001113541      SPATA31A5
43   chr9   41437683       42727346     NM_015667      SPATA31A7
44   chr9   41437683       42727346     NM_199244        FOXD4L4
45   chr9   41437683       42727346     NR_003528        ZNF658B
46   chr9   41437683       42727346     NR_003670         FGF7P3
47   chr9   41437683       42727346     NR_015363          GLIDR
48   chr9   41437683       42727346     NR_026803        FAM74A1
49   chr9   41437683       42727346     NR_121572       GXYLT1P3
52   chr9   41437683       42727346     NR_126048   LOC102724238
53   chr9   41437683       42727346     NR_126049      LOC554249
54   chr9   41437683       42727346     NR_136310   LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   91925630       92240692  NM_001134419          CDC7
2    chr1   91925630       92240692  NM_001195683        TGFBR3
4   chr15   28552849       28663705     NM_004667         HERC2
5   chr15   28552849       28663705     NR_033351       GOLGA8F
6   chr15   28552849       28663705     NR_033353       GOLGA8G
7   chr15   28805023       29121690  NM_001282468       GOLGA8M
8   chr15   28805023       29121690     NR_026589       WHAMMP2
9   chr15   28805023       29121690     NR_036443       HERC2P9
10  chr15   28805023       29121690     NR_036475  LOC100289656
11  chr15   28805023       29121690     NR_037599     PDCD6IPP2
12  chr15   28805023       29121690     NR_047567     GOLGA6L7P,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr12   16208077       16484583  NM_001170798      SLC15A5
1  chr14   21668617       21779758     NM_020366      RPGRIP1
2  chr14   21668617       21779758     NM_031314       HNRNPC
3  chr14   21668617       21779758     NR_038970    LINC00641
5   chr2  193612987      193735914     NR_002769       PCGEM1
6  chr20   14845492       15084955     NM_080676      MACROD2
7  chr20   14845492       15084955     NR_037841  MACROD2-AS1
9   chr3  105315050      105496143  NM_001321786         CBLB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  100707714      100820889  NM_001166244         HPSE2
1   chr16   16369103       16498820  NM_001004067         NOMO3
2   chr16   16369103       16498820  NM_001282511        NPIPA8
3   chr16   16369103       16498820     NR_036140     MIR3179-1
4   chr16   16369103       16498820     NR_036141     MIR3180-1
5   chr16   16369103       16498820     NR_036142     MIR3180-2
6   chr16   16369103       16498820     NR_036447        PKD1P1
7   chr16   16369103       16498820     NR_103772  LOC100288162
8   chr16   16369103       16498820     NR_106766     MIR6511A1
9   chr16   16369103       16498820     NR_106971     MIR6511A4
10  chr16   16369103       16498820     NR_107060     MIR6770-2
11  chr16   16369103       16498820     NR_128713     MIR3670-4
12   chr3   65843121       66699756  NM_001033057         MAGI1
13   chr3   65843121       66699756  NM_001164796      SLC25A26
15   chr3   65843121       66699756     NM_015541         LRIG1
17   chr3   65843121       66699756     NR_046575     MAGI1-AS1
18   chr5  109859499      110070911  NM_001039763       TMEM232,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21722573       21968310  NM_001163380         RAB2B
1   chr14   21722573       21968310  NM_001170629          CHD8
2   chr14   21722573       21968310  NM_001303523          TOX4
3   chr14   21722573       21968310     NM_007192       SUPT16H
4   chr14   21722573       21968310     NM_019852        METTL3
5   chr14   21722573       21968310     NM_020366       RPGRIP1
7   chr14   21722573       21968310     NM_031314        HNRNPC
9   chr14   21722573       21968310     NR_002916        SNORD8
10  chr14   21722573       21968310     NR_003029        SNORD9
11  chr16   21515551       21699062  NM_001077180        METTL9
12  chr16   21515551       21699062  NM_001161683          OTOA
14  chr16   21515551       21699062     NM_005849         IGSF6
16  chr16   21515551       21699062     NR_002594      SLC7A5P2
17  chr16   21515551       21699062     NR_049833     MIR3680-2
18  chr16   21515551       21699062     NR_110930  LOC101927814
19   chr4   68934651       69086430     NM_207407     TMPRSS11F
20   chr4   68934651       69086430     NR_015446        FTLP10
21   chr4   68934651       69086430     NR_046116     LOC550113
22   chr4   68934651       69086430     NR_104048   TMPRSS11BNL
23   chr5   95349961       97228877     NM_000439         PCSK1
24   chr5   95349961       97228877  NM_001040458         ERAP1
25   chr5   95349961       97228877  NM_001042440          CAST
26   chr5   95349961       97228877  NM_001130140         ERAP2
27   chr5   95349961       97228877  NM_001159749         RIOK2
34   chr5   95349961       97228877     NM_005575         LNPEP
37   chr5   95349961       97228877     NM_153234          LIX1
39   chr5   95349961       97228877     NR_030309        MIR583
41   chr5   95349961       97228877     NR_105028     LINC01340
42   chr5   95349961       97228877     NR_130776  LOC101929710
43   chr7  117500965      117653801     NM_033427       CTTNBP2
44   chr9   41902704       42043495     NR_003670        FGF7P3
45   chr9   41902704       42043495     NR_015363         GLIDR
48   chr9   41902704       42043495     NR_126048  LOC102724238
49   chr9   41902704       42043495     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21829577       21973609  NM_001163380         RAB2B
1   chr14   21829577       21973609  NM_001170629          CHD8
2   chr14   21829577       21973609  NM_001303523          TOX4
3   chr14   21829577       21973609     NM_007192       SUPT16H
4   chr14   21829577       21973609     NM_019852        METTL3
7   chr14   21829577       21973609     NR_002916        SNORD8
8   chr14   21829577       21973609     NR_003029        SNORD9
9    chr2   36285904       36687267     NM_016441         CRIM1
10   chr2   36285904       36687267     NR_037631  LOC100288911,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28699100       29452453  NM_001130414         APBA2
1   chr15   28699100       29452453  NM_001282468       GOLGA8M
2   chr15   28699100       29452453     NM_015307      FAM189A1
3   chr15   28699100       29452453     NR_026589       WHAMMP2
4   chr15   28699100       29452453     NR_033351       GOLGA8F
5   chr15   28699100       29452453     NR_033353       GOLGA8G
6   chr15   28699100       29452453     NR_036443       HERC2P9
7   chr15   28699100       29452453     NR_036475  LOC100289656
8   chr15   28699100       29452453     NR_037599     PDCD6IPP2
9   chr15   28699100       29452453     NR_039734     MIR4509-3
10  chr15   28699100       29452453     NR_047567     GOLGA6L7P
11   chr7   80199287       80346194     NM_000072          CD36
19   chr9   41508961       41677975     NR_003528       ZNF658B
20   chr9   41508961       41677975     NR_026803       FAM74A1
21   chr9  102132071      102352375     NR_102270          NAMA
22   chr9  102132071      102352375     NR_109802  LOC101928438,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12798468       12948183  NM_001009611       PRAMEF4
1    chr1   12798468       12948183  NM_001013631      HNRNPCL1
2    chr1   12798468       12948183  NM_001080830      PRAMEF12
3    chr1   12798468       12948183  NM_001146181      HNRNPCL3
4    chr1   12798468       12948183  NM_001146344      PRAMEF11
5    chr1   12798468       12948183  NM_001294139       PRAMEF1
6    chr1   12798468       12948183  NM_001302551      HNRNPCL4
8    chr1   12798468       12948183     NM_023014       PRAMEF2
9    chr1   12798468       12948183     NM_152290      C1orf158
10   chr1  245017826      245262722  NM_001143943        EFCAB2
12   chr1  245017826      245262722     NM_004501        HNRNPU
14   chr1  245017826      245262722     NR_111907  LOC101928068
15  chr14   61790886       63329247  NM_001243084         HIF1A
16  chr14   61790886       63329247     NM_003082        SNAPC1
17  chr14   61790886       63329247     NM_006255         PRKCH
18  chr14   61790886       63329247     NM_031914         SYT16
19  chr14   61790886       63329247     NM_139318         KCNH5
21  chr14   61790886       63329247     NR_015358     LINC00643
22  chr14   61790886       63329247     NR_039985      FLJ22447
23  chr14   61790886       63329247     NR_045406     HIF1A-AS2
24  chr14   61790886       63329247     NR_047116     HIF1A-AS1
25  chr14   61790886       63329247     NR_104063     LINC00644
26  chr14   61790886       63329247     NR_110416  LOC101927780
28  chr14   61790886       63329247     NR_144368  LOC105370526
29  chr15   77831281       77973325  NM_001301186        LINGO1
39  chr15   77831281       77973325     NR_045123    LINGO1-AS1
40  chr15   77831281       77973325     NR_120361    LINGO1-AS2
41  chr16   14793578       15013525  NM_001277323        NPIPA3
43  chr16   14793578       15013525  NM_001277324        NPIPA2
45  chr16   14793578       15013525     NM_014287         NOMO1
46  chr16   14793578       15013525     NR_023387       ABCC6P2
47  chr16   14793578       15013525     NR_036140     MIR3179-1
48  chr16   14793578       15013525     NR_036141     MIR3180-1
49  chr16   14793578       15013525     NR_036142     MIR3180-2
50  chr16   14793578       15013525     NR_128713     MIR3670-4
51  chr20   41019359       41122069     NM_133170         PTPRT
52  chr22   18975611       19255486  NM_001184781         DGCR2
53  chr22   18975611       19255486  NM_001256534       SLC25A1
54  chr22   18975611       19255486     NM_001835        CLTCL1
55  chr22   18975611       19255486     NM_005315          GSC2
57  chr22   18975611       19255486     NM_022719        DGCR14
58  chr22   18975611       19255486     NM_053006         TSSK2
59  chr22   18975611       19255486     NR_002733         DGCR5
60  chr22   18975611       19255486     NR_024157        DGCR11
61  chr22   18975611       19255486     NR_024159         DGCR9
62  chr22   18975611       19255486     NR_026651        DGCR10
63  chr22   18975611       19255486     NR_103767     LINC01311
65   chr5   20440250       20934065  NM_001291956         CDH18
66   chr7  110657590      111002040  NM_001099658         LRRN3
67   chr7  110657590      111002040  NM_001244606        IMMP2L
69   chr9   31324257       31447599     NR_135134     LINC01243,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21839472       21972074  NM_001163380      RAB2B
1   chr14   21839472       21972074  NM_001170629       CHD8
2   chr14   21839472       21972074  NM_001303523       TOX4
3   chr14   21839472       21972074     NM_007192    SUPT16H
4   chr14   21839472       21972074     NM_019852     METTL3
7   chr14   21839472       21972074     NR_002916     SNORD8
8   chr14   21839472       21972074     NR_003029     SNORD9
9   chr21   23039019       23145952     NR_038872  LINC00317
10  chr21   23039019       23145952     NR_109958  LINC01425
11   chr4    8972089        9374435  NM_001242326   USP17L25
19   chr4    8972089        9374435  NM_001256852   USP17L10
20   chr4    8972089        9374435  NM_001256853   USP17L12
22   chr4    8972089        9374435  NM_001256854   USP17L11
25   chr4    8972089        9374435  NM_001256855   USP17L13
26   chr4    8972089        9374435  NM_001256857   USP17L17
27   chr4    8972089        9374435  NM_001256860   USP17L19
28   chr4    8972089        9374435  NM_001256861   USP17L20
29   chr4    8972089        9374435  NM_001256894   USP17L15
30   chr4    8972089        9374435     NR_027279   USP17L6P
31   chr4    8972089        9374435     NR_046416   USP17L9P,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   48256982       48386989  NM_001004702     OR4C3
1   chr11   48256982       48386989  NM_001004725     OR4S1
2   chr11   48256982       48386989  NM_001004726     OR4X1
3   chr11   48256982       48386989  NM_001004727     OR4X2
4   chr11   48256982       48386989  NM_001005513    OR4C45
5   chr14   21804798       22067658  NM_001005465    OR10G3
6   chr14   21804798       22067658  NM_001163380     RAB2B
7   chr14   21804798       22067658  NM_001170629      CHD8
8   chr14   21804798       22067658  NM_001303523      TOX4
9   chr14   21804798       22067658     NM_007192   SUPT16H
10  chr14   21804798       22067658     NM_019852    METTL3
11  chr14   21804798       22067658     NM_020366   RPGRIP1
14  chr14   21804798       22067658     NR_002916    SNORD8
15  chr14   21804798       22067658     NR_003029    SNORD9
16  chr14   21804798       22067658     NR_111966     SALL2
18  chr21   17834936       17950147     NR_027790  MIR99AHG
20  chr21   17834936       17950147     NR_029480  MIRLET7C
21  chr21   17834936       17950147     NR_029514    MIR99A
29   chr7   75893955       75998270  NM_001110199     SRRM3
30   chr7   75893955       75998270     NM_001540     HSPB1
31   chr7   75893955       75998270     NM_012479     YWHAG,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2  186581177      186729979     NM_173651         FSIP2
1  chr2  186581177      186729979     NR_110214  LOC101927196
4  chr2  186581177      186729979     NR_144453     FSIP2-AS1
6  chr5  104402479      104641942     NR_000039       RAB9BP1
7  chr7  110407083      110639134  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21935874       22065843  NM_001005465        OR10G3
1   chr14   21935874       22065843  NM_001163380         RAB2B
2   chr14   21935874       22065843  NM_001303523          TOX4
3   chr14   21935874       22065843     NM_019852        METTL3
5   chr14   21935874       22065843     NR_111966         SALL2
7   chr22   19906736       20495814     NM_000754          COMT
10  chr22   19906736       20495814  NM_001190326         DGCR8
11  chr22   19906736       20495814  NM_001242313      TMEM191B
12  chr22   19906736       20495814  NM_001243537       CCDC188
13  chr22   19906736       20495814  NM_001278639        RANBP1
16  chr22   19906736       20495814  NM_001282512        TXNRD2
17  chr22   19906736       20495814  NM_001283116        TANGO2
20  chr22   19906736       20495814     NM_001670         ARVCF
23  chr22   19906736       20495814     NM_013373        ZDHHC8
24  chr22   19906736       20495814     NM_015672        RIMBP3
25  chr22   19906736       20495814     NM_022727        TRMT2A
26  chr22   19906736       20495814     NM_023004         RTN4R
27  chr22   19906736       20495814     NM_033257        DGCR6L
28  chr22   19906736       20495814     NR_003563       PI4KAP1
29  chr22   19906736       20495814     NR_026919     LINC00896
30  chr22   19906736       20495814     NR_029706        MIR185
31  chr22   19906736       20495814     NR_031618       MIR1286
32  chr22   19906736       20495814     NR_031706       MIR1306
33  chr22   19906736       20495814     NR_037412       MIR3618
34  chr22   19906736       20495814     NR_038460     LOC284865
35  chr22   19906736       20495814     NR_039918       MIR4761
36  chr22   19906736       20495814     NR_106874       MIR6816
37  chr22   19906736       20495814     NR_136560       FAM230A
38  chr22   19906736       20495814     NR_136572  LOC101927859
39   chr3  162859873      163006684     NR_033945     LINC01192,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12849314       13580709  NM_001009611    PRAMEF4
1    chr1   12849314       13580709  NM_001010889    PRAMEF6
3    chr1   12849314       13580709  NM_001010890    PRAMEF9
4    chr1   12849314       13580709  NM_001012276    PRAMEF8
6    chr1   12849314       13580709  NM_001013407    PRAMEF5
8    chr1   12849314       13580709  NM_001013631   HNRNPCL1
9    chr1   12849314       13580709  NM_001024661   PRAMEF14
10   chr1   12849314       13580709  NM_001039361   PRAMEF10
11   chr1   12849314       13580709  NM_001098376   PRAMEF15
12   chr1   12849314       13580709  NM_001099790   PRAMEF19
13   chr1   12849314       13580709  NM_001099850   PRAMEF18
15   chr1   12849314       13580709  NM_001099851   PRAMEF17
16   chr1   12849314       13580709  NM_001099852   PRAMEF20
17   chr1   12849314       13580709  NM_001100631   PRAMEF22
19   chr1   12849314       13580709  NM_001136561   HNRNPCL2
20   chr1   12849314       13580709  NM_001146181   HNRNPCL3
21   chr1   12849314       13580709  NM_001146344   PRAMEF11
22   chr1   12849314       13580709  NM_001291381  PRAMEF33P
23   chr1   12849314       13580709  NM_001294139    PRAMEF1
24   chr1   12849314       13580709  NM_001300891   PRAMEF27
26   chr1   12849314       13580709  NM_001302551   HNRNPCL4
27   chr1   12849314       13580709  NM_001306072   PRAMEF26
28   chr1   12849314       13580709  NM_001310134   PRAMEF25
30   chr1   12849314       13580709     NM_023014    PRAMEF2
31   chr1   12849314       13580709     NR_111945  PRAMEF36P
33  chr14   21830440       21969618  NM_001163380      RAB2B
34  chr14   21830440       21969618  NM_001170629       CHD8
35  chr14   21830440       21969618  NM_001303523       TOX4
36  chr14   21830440       21969618     NM_007192    SUPT16H
37  chr14   21830440       21969618     NM_019852     METTL3
40  chr14   21830440       21969618     NR_002916     SNORD8
41  chr14   21830440       21969618     NR_003029     SNORD9
42   chr6  162786376      162985161     NM_013988      PARK2
43   chr8   15262714       15430693     NM_006765      TUSC3,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr15   28242728       29227115     NM_000275            OCA2
1   chr15   28242728       29227115  NM_001130414           APBA2
2   chr15   28242728       29227115  NM_001282468         GOLGA8M
4   chr15   28242728       29227115     NM_004667           HERC2
5   chr15   28242728       29227115     NR_026589         WHAMMP2
6   chr15   28242728       29227115     NR_033351         GOLGA8F
8   chr15   28242728       29227115     NR_033353         GOLGA8G
10  chr15   28242728       29227115     NR_036443         HERC2P9
11  chr15   28242728       29227115     NR_036475    LOC100289656
12  chr15   28242728       29227115     NR_037599       PDCD6IPP2
13  chr15   28242728       29227115     NR_039734       MIR4509-3
15  chr15   28242728       29227115     NR_047567       GOLGA6L7P
16  chr15   44007673       44786699  NM_001018108           SERF2
17  chr15   44007673       44786699  NM_001167941           WDR76
21  chr15   44007673       44786699  NM_001199885            HYPK
22  chr15   44007673       44786699  NM_001258031         SERINC4
23  chr15   44007673       44786699  NM_001286490           FRMD5
25  chr15   44007673       44786699     NM_005313           PDIA3
26  chr15   44007673       44786699     NM_005926           MFAP1
27  chr15   44007673       44786699     NM_016396         CTDSPL2
28  chr15   44007673       44786699     NM_025165            ELL3
29  chr15   44007673       44786699     NM_177974           CASC4
30  chr15   44007673       44786699     NR_002318      CATSPER2P1
31  chr15   44007673       44786699     NR_003571          PIN4P1
32  chr15   44007673       44786699     NR_031695         MIR1282
33  chr15   44007673       44786699     NR_037673  SERF2-C15ORF63
34  chr18   14719862       14842791  NM_001145029        ANKRD30B
35  chr18   14719862       14842791     NR_036153       MIR3156-2
36  chr19     112911         269505     NR_028324       LINC01002
37   chr2   50753818       50966769  NM_001330082           NRXN1
38   chr2   50753818       50966769     NR_130470         MIR8485
39   chr7   64116909       64242005  NM_001282360          ZNF107
41   chr7   64116909       64242005     NR_106898         MIR6839,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr16   21458885       21590686  NR_002594      SLC7A5P2
1  chr16   21458885       21590686  NR_027155        SMG1P3
2  chr16   21458885       21590686  NR_049833     MIR3680-2
3   chr2  186564318      186665444  NM_173651         FSIP2
4   chr2  186564318      186665444  NR_110214  LOC101927196
7   chr2  186564318      186665444  NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  108415033      108749021     NM_006113         VAV3
1    chr1  108415033      108749021     NM_013386     SLC25A24
3    chr1  108415033      108749021     NR_046653     VAV3-AS1
4    chr1  108415033      108749021     NR_107006      MIR7852
5   chr14   21853159       22190831  NM_001001912        OR4E2
6   chr14   21853159       22190831  NM_001005465       OR10G3
7   chr14   21853159       22190831  NM_001005466       OR10G2
8   chr14   21853159       22190831  NM_001163380        RAB2B
9   chr14   21853159       22190831  NM_001170629         CHD8
10  chr14   21853159       22190831  NM_001303523         TOX4
11  chr14   21853159       22190831  NM_001317107        OR4E1
12  chr14   21853159       22190831     NM_019852       METTL3
15  chr14   21853159       22190831     NR_002916       SNORD8
16  chr14   21853159       22190831     NR_003029       SNORD9
17  chr14   21853159       22190831     NR_111966        SALL2
19  chr20   14775499       14889532     NM_080676      MACROD2
20  chr20   14775499       14889532     NR_037841  MACROD2-AS1
22   chr3  101153979      101604249     NM_000986        RPL24
23   chr3  101153979      101604249  NM_001005474       NFKBIZ
24   chr3  101153979      101604249  NM_001134456        NXPE3
25   chr3  101153979      101604249  NM_001282803        SENP7
27   chr3  101153979      101604249  NM_001303401        CEP97
28   chr3  101153979      101604249  NM_001320399         PCNP
29   chr3  101153979      101604249     NM_014415       ZBTB11
30   chr3  101153979      101604249     NM_017819      TRMT10C
33   chr3  101153979      101604249     NR_002941      PDCL3P4
34   chr3  101153979      101604249     NR_024407   ZBTB11-AS1
35   chr3  101153979      101604249     NR_036433     FAM172BP
36   chr4   69238863       69339938     NM_014058    TMPRSS11E
37   chr7  153835479      153959944  NM_001039350         DPP6
40   chr9   28559999       28833412  NM_001258282       LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68026886       68452893  NM_001127384        CTNNA3
2   chr16   16362280       16536291  NM_001004067         NOMO3
3   chr16   16362280       16536291  NM_001282511        NPIPA8
4   chr16   16362280       16536291     NR_036140     MIR3179-1
5   chr16   16362280       16536291     NR_036141     MIR3180-1
6   chr16   16362280       16536291     NR_036142     MIR3180-2
7   chr16   16362280       16536291     NR_036447        PKD1P1
8   chr16   16362280       16536291     NR_103772  LOC100288162
9   chr16   16362280       16536291     NR_106766     MIR6511A1
10  chr16   16362280       16536291     NR_106971     MIR6511A4
11  chr16   16362280       16536291     NR_107060     MIR6770-2
12  chr16   16362280       16536291     NR_128713     MIR3670-4
13   chr5    5921190        6767120  NM_001145161       UBE2QL1
14   chr5    5921190        6767120  NM_001171805         PAPD7
16   chr5    5921190        6767120  NM_001324322        SRD5A1
17   chr5    5921190        6767120     NM_032286         MED10
18   chr5    5921190        6767120     NR_024423     LINC01018
20   chr5    5921190        6767120     NR_028351      FLJ33360
21   chr5    5921190        6767120     NR_037947         NSUN2
22   chr5    5921190        6767120     NR_103771  LOC100505625
23   chr5   95356594       95504655     NR_030309        MIR583
24   chr5   95356594       95504655     NR_130776  LOC101929710
25   chr7  110581746      110744063  NM_001099658         LRRN3
26   chr7  110581746      110744063  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21918844       22460105  NM_001001912      OR4E2
1   chr14   21918844       22460105  NM_001005465     OR10G3
2   chr14   21918844       22460105  NM_001005466     OR10G2
3   chr14   21918844       22460105  NM_001163380      RAB2B
4   chr14   21918844       22460105  NM_001303523       TOX4
5   chr14   21918844       22460105  NM_001317107      OR4E1
6   chr14   21918844       22460105     NM_019852     METTL3
8   chr14   21918844       22460105     NR_111966      SALL2
10   chr3  174281523      174639005     NM_207015   NAALADL2
11   chr5  104135037      105691278     NR_000039    RAB9BP1
12   chr9   74721580       74960277  NM_001242505        GDA
14   chr9   74721580       74960277     NR_110952  LINC01504,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143559582      144072926  NM_001123068       PPIAL4G
1    chr1  143559582      144072926  NM_001287385        FAM72C
2    chr1  143559582      144072926  NM_001345942        FAM72D
6    chr1  143559582      144072926     NR_104014     LINC01138
7    chr1  143559582      144072926     NR_106967       MIR6077
8    chr1  143559582      144072926     NR_111930  LOC100132057
10  chr10   89015078       89127198     NR_024397    NUTM2A-AS1
11  chr10   89015078       89127198     NR_029408     LINC00863
12  chr10   89015078       89127198     NR_075100        NUTM2D
14  chr14   21774798       21929376  NM_001163380         RAB2B
15  chr14   21774798       21929376  NM_001170629          CHD8
16  chr14   21774798       21929376     NM_007192       SUPT16H
17  chr14   21774798       21929376     NM_020366       RPGRIP1
20  chr14   21774798       21929376     NR_002916        SNORD8
21  chr14   21774798       21929376     NR_003029        SNORD9
22   chr2   97155876       97427355  NM_001115016        KANSL3
23   chr2   97155876       97427355  NM_001285485        NEURL3
24   chr2   97155876       97427355  NM_001293083        FER1L5
25   chr2   97155876       97427355  NM_001319085        ARID5A
27   chr2   97155876       97427355  NM_001322354        LMAN2L
28   chr2   97155876       97427355     NM_020184         CNNM4
32   chr2   97155876       97427355     NR_135564  LOC105373496
33   chr6  162406165      162617254     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17189220       18355418  NM_001037814          GAB4
1   chr22   17189220       18355418  NM_001122731        MICAL3
3   chr22   17189220       18355418  NM_001163079         CECR6
4   chr22   17189220       18355418  NM_001244567           BID
7   chr22   17189220       18355418  NM_001270733       BCL2L13
8   chr22   17189220       18355418  NM_001282227         CECR1
10  chr22   17189220       18355418  NM_001288707  LOC101929372
11  chr22   17189220       18355418  NM_001289905        IL17RA
12  chr22   17189220       18355418  NM_001290046         CECR2
14  chr22   17189220       18355418  NM_001303484      SLC25A18
15  chr22   17189220       18355418     NM_001696      ATP6V1E1
18  chr22   17189220       18355418     NM_017829         CECR5
21  chr22   17189220       18355418     NM_175878          XKR3
23  chr22   17189220       18355418     NR_003607       HSFY1P1
24  chr22   17189220       18355418     NR_015352         CECR7
25  chr22   17189220       18355418     NR_024482     CECR5-AS1
26  chr22   17189220       18355418     NR_036168     MIR3198-1
27  chr22   17189220       18355418     NR_038398         CECR3
29  chr22   17189220       18355418     NR_103718     LINC00528
30  chr22   17189220       18355418     NR_103793  LOC100996342
31  chr22   17189220       18355418     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56447814       56917491  NM_001142770        PCDH15
3    chr2   56543874       56697185  NM_001080433       CCDC85A
4    chr2  186420298      186733925     NM_173651         FSIP2
5    chr2  186420298      186733925     NR_110214  LOC101927196
8    chr2  186420298      186733925     NR_144453     FSIP2-AS1
10   chr4  169219796      169500101  NM_001012967        DDX60L
11   chr4  169219796      169500101  NM_001166108         PALLD
13   chr4  169219796      169500101     NM_017631         DDX60
14   chr7   19737048       19882835  NM_001002926       TWISTNB
15   chr7   19737048       19882835     NM_152774       TMEM196
16   chr7   19737048       19882835     NR_036101       MIR3146,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143523689      143788162  NM_001123068       PPIAL4G
1    chr1  143523689      143788162     NR_104014     LINC01138
2    chr1  143523689      143788162     NR_106967       MIR6077
3    chr1  143523689      143788162     NR_111930  LOC100132057
4    chr1  143689029      144096906  NM_001123068       PPIAL4G
5    chr1  143689029      144096906  NM_001287385        FAM72C
6    chr1  143689029      144096906  NM_001345942        FAM72D
10   chr1  143689029      144096906     NR_104014     LINC01138
11   chr1  143689029      144096906     NR_111930  LOC100132057
13  chr19    1067108        1193135  NM_001039848          GPX4
14  chr19    1067108        1193135  NM_001100122         SBNO2
15  chr19    1067108        1193135  NM_001258328      ARHGAP45
18  chr19    1067108        1193135  NM_001316323        POLR2E
23   chr2   62232453       62371954  NM_001321781        COMMD1
25   chr5   63799082       64056551  NM_001029875        RGS7BP
26   chr5   63799082       64056551  NM_001164442       FAM159B
27   chr5   63799082       64056551     NM_173829      SREK1IP1
29   chr7  110534498      110643662  NM_001244606        IMMP2L
31   chr7  110656760      112319903  NM_001099658         LRRN3
32   chr7  110656760      112319903  NM_001134468        LSMEM1
33   chr7  110656760      112319903  NM_001197079         IFRD1
35   chr7  110656760      112319903  NM_001244606        IMMP2L
37   chr7  110656760      112319903     NM_014705         DOCK4
38   chr7  110656760      112319903     NM_021994        ZNF277
41   chr7  110656760      112319903     NR_103806     DOCK4-AS1
42   chr7  110656760      112319903     NR_110158  LOC101928012
43   chr7  110656760      112319903     NR_110160  LOC100996249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   26001649       26346256     NM_017433         MYO3A
1   chr10   26001649       26346256     NR_108067     LINC00836
2   chr10   26001649       26346256     NR_120650  LOC101929073
3   chr14   21689966       22028083  NM_001163380         RAB2B
4   chr14   21689966       22028083  NM_001170629          CHD8
5   chr14   21689966       22028083  NM_001303523          TOX4
6   chr14   21689966       22028083     NM_007192       SUPT16H
7   chr14   21689966       22028083     NM_019852        METTL3
8   chr14   21689966       22028083     NM_020366       RPGRIP1
10  chr14   21689966       22028083     NM_031314        HNRNPC
12  chr14   21689966       22028083     NR_002916        SNORD8
13  chr14   21689966       22028083     NR_003029        SNORD9
14  chr14   21689966       22028083     NR_111966         SALL2
16  chr17     135548         272181  NM_001013672      C17orf97
17  chr17     135548         272181  NM_001190411        RPH3AL
18  chr17     135548         272181     NR_040011  LOC100506388
19  chr17     135548         272181     NR_136407  LOC105371430
20   chr2  242452319      242610332  NM_001164356         THAP4
22   chr2  242452319      242610332     NM_032515           BOK
23   chr2  242452319      242610332     NM_178326         ATG4B
24   chr2  242452319      242610332     NR_033346       BOK-AS1
25  chr20   14667433       14853373     NM_080676       MACROD2
26  chr22   32358164       32476612     NM_000343        SLC5A1
28   chr7   53300281       53926408     NR_038371     LINC01446
29   chr9   41528215       41640769     NR_003528       ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12700735       12844767  NM_001013630       AADACL4
1    chr1   12700735       12844767  NM_001080830      PRAMEF12
2    chr1   12700735       12844767  NM_001103170       AADACL3
3    chr1   12700735       12844767     NM_152290      C1orf158
4   chr10  135239432      135386376     NM_000773        CYP2E1
5   chr10  135239432      135386376  NM_001143763         SYCE1
8   chr10  135239432      135386376     NR_002934        SCART1
9   chr10  135239432      135386376     NR_033789        SPRNP1
10  chr14   21783282       21973134  NM_001163380         RAB2B
11  chr14   21783282       21973134  NM_001170629          CHD8
12  chr14   21783282       21973134  NM_001303523          TOX4
13  chr14   21783282       21973134     NM_007192       SUPT16H
14  chr14   21783282       21973134     NM_019852        METTL3
15  chr14   21783282       21973134     NM_020366       RPGRIP1
18  chr14   21783282       21973134     NR_002916        SNORD8
19  chr14   21783282       21973134     NR_003029        SNORD9
20  chr16   15395693       15617408  NM_001128423        MPV17L
21  chr16   15395693       15617408  NM_001142469      C16orf45
22  chr16   15395693       15617408  NM_001277325        NPIPA5
24  chr17   14027809       14209004  NM_001007530        CDRT15
25  chr17   14027809       14209004     NM_001303         COX10
26  chr17   14027809       14209004     NM_006041      HS3ST3B1
27  chr17   14027809       14209004     NR_026880      MGC12916
28   chr7     142168         271126     NM_020223        FAM20C
29   chr7     142168         271126     NR_108065  LOC100507642
30   chr7     142168         271126     NR_134324  LOC105375115
31   chr7     142168         271126     NR_134325  LOC102723672
32   chr7   14853302       15080116     NM_004080          DGKB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21754786       22058221  NM_001005465        OR10G3
1   chr14   21754786       22058221  NM_001163380         RAB2B
2   chr14   21754786       22058221  NM_001170629          CHD8
3   chr14   21754786       22058221  NM_001303523          TOX4
4   chr14   21754786       22058221     NM_007192       SUPT16H
5   chr14   21754786       22058221     NM_019852        METTL3
6   chr14   21754786       22058221     NM_020366       RPGRIP1
9   chr14   21754786       22058221     NR_002916        SNORD8
10  chr14   21754786       22058221     NR_003029        SNORD9
11  chr14   21754786       22058221     NR_111966         SALL2
13  chr21   23166514       23564581     NR_038400     LINC00308
14  chr21   23166514       23564581     NR_109958     LINC01425
15  chr21   23166514       23564581     NR_109959  LOC101927843
16   chr4   91169076       91401804  NM_001145065        CCSER1
18   chr4  189242236      190560035     NR_033869     LINC01060
19   chr9   41909761       42018828     NR_003670        FGF7P3
20   chr9   41909761       42018828     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   95773641       96124633  NM_001160100     CLDN10
1   chr13   95773641       96124633  NM_001301829      ABCC4
3   chr16   18470854       18614856  NM_001004060      NOMO2
4   chr16   18470854       18614856     NR_003569    ABCC6P1
5   chr16   18470854       18614856     NR_036140  MIR3179-1
6   chr16   18470854       18614856     NR_036142  MIR3180-2
7   chr16   18470854       18614856     NR_036144  MIR3180-3
8   chr16   18470854       18614856     NR_037442  MIR3670-1
9   chr16   18470854       18614856     NR_107060  MIR6770-2
10   chr4     136862         356711  NM_001039127     ZNF718
11   chr4     136862         356711  NM_001137608     ZNF732
14   chr4     136862         356711     NM_003441     ZNF141
15   chr4     136862         356711     NR_027481    ZNF876P
16   chr4     136862         356711     NR_030297     MIR571,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10  134068792      134205301  NM_001143757     LRRC27
3   chr10  134068792      134205301  NM_001318878     STK32C
10  chr22   19011954       19193064  NM_001184781      DGCR2
11  chr22   19011954       19193064  NM_001256534    SLC25A1
12  chr22   19011954       19193064     NM_001835     CLTCL1
13  chr22   19011954       19193064     NM_005315       GSC2
15  chr22   19011954       19193064     NM_022719     DGCR14
16  chr22   19011954       19193064     NM_053006      TSSK2
17  chr22   19011954       19193064     NR_024157     DGCR11
18  chr22   19011954       19193064     NR_103767  LINC01311
19  chr22   19011954       19193064     NR_110533      DGCR5,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   48363355       48472070  NM_001005513     OR4C45
1   chr14   21714848       21883862  NM_001170629       CHD8
2   chr14   21714848       21883862     NM_007192    SUPT16H
3   chr14   21714848       21883862     NM_020366    RPGRIP1
5   chr14   21714848       21883862     NM_031314     HNRNPC
6   chr14   21714848       21883862     NR_002916     SNORD8
7   chr14   21714848       21883862     NR_003029     SNORD9
8   chr16   29754890       29937948  NM_001114099     SEZ6L2
9   chr16   29754890       29937948  NM_001256269      KIF22
11  chr16   29754890       29937948  NM_001256443      PRRT2
12  chr16   29754890       29937948  NM_001276275        MAZ
13  chr16   29754890       29937948  NM_001286585      CDIPT
14  chr16   29754890       29937948  NM_001293204        MVP
17  chr16   29754890       29937948     NM_024516      PAGR1
18  chr16   29754890       29937948     NM_152338       ZG16
19  chr16   29754890       29937948     NM_175900   C16orf54
20  chr16   29754890       29937948     NM_178863     KCTD13
21  chr16   29754890       29937948     NM_181718     ASPHD1
22  chr16   29754890       29937948     NR_015396  CDIPT-AS1,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr14   21846488       22057409  NM_001005465          OR10G3
1   chr14   21846488       22057409  NM_001163380           RAB2B
2   chr14   21846488       22057409  NM_001170629            CHD8
3   chr14   21846488       22057409  NM_001303523            TOX4
4   chr14   21846488       22057409     NM_007192         SUPT16H
5   chr14   21846488       22057409     NM_019852          METTL3
8   chr14   21846488       22057409     NR_002916          SNORD8
9   chr14   21846488       22057409     NR_003029          SNORD9
10  chr14   21846488       22057409     NR_111966           SALL2
12  chr15   43746143       44904584  NM_001018108           SERF2
13  chr15   43746143       44904584  NM_001141979         TP53BP1
14  chr15   43746143       44904584  NM_001167941           WDR76
15  chr15   43746143       44904584  NM_001190214         PPIP5K1
19  chr15   43746143       44904584  NM_001199885            HYPK
20  chr15   43746143       44904584  NM_001258031         SERINC4
21  chr15   43746143       44904584  NM_001282309        CATSPER2
22  chr15   43746143       44904584  NM_001286490           FRMD5
24  chr15   43746143       44904584  NM_001321927          CKMT1A
27  chr15   43746143       44904584     NM_002373           MAP1A
28  chr15   43746143       44904584     NM_003758           EIF3J
29  chr15   43746143       44904584     NM_005313           PDIA3
31  chr15   43746143       44904584     NM_005926           MFAP1
33  chr15   43746143       44904584     NM_016396         CTDSPL2
34  chr15   43746143       44904584     NM_020990          CKMT1B
35  chr15   43746143       44904584     NM_025137           SPG11
36  chr15   43746143       44904584     NM_025165            ELL3
37  chr15   43746143       44904584     NM_153700            STRC
39  chr15   43746143       44904584     NM_177974           CASC4
40  chr15   43746143       44904584     NR_002318      CATSPER2P1
41  chr15   43746143       44904584     NR_003571          PIN4P1
42  chr15   43746143       44904584     NR_031695         MIR1282
43  chr15   43746143       44904584     NR_034170       EIF3J-AS1
45  chr15   43746143       44904584     NR_037673  SERF2-C15ORF63
49  chr17   14051150       14273290  NM_001007530          CDRT15
50  chr17   14051150       14273290     NM_001303           COX10
51  chr17   14051150       14273290     NM_006041        HS3ST3B1
52  chr17   14051150       14273290     NR_026880        MGC12916
53  chr18   24797600       25093415     NR_134589    LOC105372038
54  chr22   19913510       20094705     NM_000754            COMT
57  chr22   19913510       20094705  NM_001190326           DGCR8
58  chr22   19913510       20094705  NM_001282512          TXNRD2
59  chr22   19913510       20094705  NM_001283116          TANGO2
62  chr22   19913510       20094705     NM_001670           ARVCF
65  chr22   19913510       20094705     NR_029706          MIR185
66  chr22   19913510       20094705     NR_031706         MIR1306
67  chr22   19913510       20094705     NR_037412         MIR3618
68  chr22   19913510       20094705     NR_039918         MIR4761,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143665154      144328173  NM_001123068       PPIAL4G
1    chr1  143665154      144328173  NM_001278267        NBPF20
2    chr1  143665154      144328173  NM_001287385        FAM72C
3    chr1  143665154      144328173  NM_001345942        FAM72D
7    chr1  143665154      144328173     NR_024511     LINC00623
9    chr1  143665154      144328173     NR_104014     LINC01138
10   chr1  143665154      144328173     NR_106967       MIR6077
11   chr1  143665154      144328173     NR_111930  LOC100132057
12   chr1  143665154      144328173     NR_111953     LINC00869
14  chr11   48345031       48457737  NM_001004702         OR4C3
15  chr11   48345031       48457737  NM_001005513        OR4C45
16  chr11   63530879       63952120  NM_001039469         MARK2
17  chr11   63530879       63952120  NM_001144936      C11orf95
18  chr11   63530879       63952120  NM_001300800         NAA40
19  chr11   63530879       63952120     NM_004074         COX8A
20  chr11   63530879       63952120     NM_013280         FLRT1
21  chr11   63530879       63952120     NM_014067       MACROD1
24  chr11   63530879       63952120     NM_138471      C11orf84
25  chr11   63530879       63952120     NM_173587         RCOR2
26  chr11   63530879       63952120     NR_003089         OTUB1
27   chr8    2112558        2441101     NR_125425  LOC101927815,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145272351      145405191  NM_001277444         NBPF9
1    chr1  145272351      145405191  NM_001278267        NBPF20
2    chr1  145272351      145405191  NM_001302371        NBPF10
3    chr1  145272351      145405191     NM_203458      NOTCH2NL
4    chr1  145272351      145405191     NR_104217       NBPF25P
5    chr1  145272351      145405191     NR_125967  LOC101928979
6   chr12  130251054      130445293     NM_133448      TMEM132D
7   chr14   21715755       21859888  NM_001170629          CHD8
8   chr14   21715755       21859888     NM_007192       SUPT16H
9   chr14   21715755       21859888     NM_020366       RPGRIP1
11  chr14   21715755       21859888     NM_031314        HNRNPC
12  chr15   99971488      100402443  NM_001130928         MEF2A
13  chr15   99971488      100402443  NM_001284417        LYSMD4
16  chr15   99971488      100402443     NR_003260       DNM1P46
17  chr15   99971488      100402443     NR_135737     LOC400464
18  chr17   48057366       48204284  NM_001199898          PDK2
21  chr17   48057366       48204284  NM_001257359        SAMD14
22  chr17   48057366       48204284     NM_002204         ITGA3
24  chr17   48057366       48204284     NM_005220          DLX3
25  chr17   48057366       48204284     NR_038230     LOC284080
26  chr21   23486597       23670439     NR_038400     LINC00308,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21928876       22108860  NM_001005465        OR10G3
1   chr14   21928876       22108860  NM_001005466        OR10G2
2   chr14   21928876       22108860  NM_001163380         RAB2B
3   chr14   21928876       22108860  NM_001303523          TOX4
4   chr14   21928876       22108860     NM_019852        METTL3
6   chr14   21928876       22108860     NR_111966         SALL2
8   chr22   19932380       21490066     NM_000185      SERPIND1
9   chr22   19932380       21490066     NM_000754          COMT
10  chr22   19932380       21490066  NM_001018060         AIFM3
14  chr22   19932380       21490066  NM_001159554         P2RX6
15  chr22   19932380       21490066  NM_001190326         DGCR8
16  chr22   19932380       21490066  NM_001242313      TMEM191B
17  chr22   19932380       21490066  NM_001243537       CCDC188
18  chr22   19932380       21490066  NM_001256523         ZNF74
19  chr22   19932380       21490066  NM_001278639        RANBP1
22  chr22   19932380       21490066  NM_001283116        TANGO2
23  chr22   19932380       21490066  NM_001291006       LRRC74B
24  chr22   19932380       21490066  NM_001293236         MED15
28  chr22   19932380       21490066     NM_001670         ARVCF
29  chr22   19932380       21490066     NM_004173        SLC7A4
30  chr22   19932380       21490066     NM_004782        SNAP29
31  chr22   19932380       21490066     NM_005207          CRKL
33  chr22   19932380       21490066     NM_006767         LZTR1
35  chr22   19932380       21490066     NM_013373        ZDHHC8
36  chr22   19932380       21490066     NM_015672        RIMBP3
37  chr22   19932380       21490066     NM_022727        TRMT2A
38  chr22   19932380       21490066     NM_023004         RTN4R
39  chr22   19932380       21490066     NM_030573         THAP7
40  chr22   19932380       21490066     NM_033257        DGCR6L
41  chr22   19932380       21490066     NM_058004         PI4KA
42  chr22   19932380       21490066     NM_153334        SCARF2
43  chr22   19932380       21490066     NR_002829        P2RX6P
44  chr22   19932380       21490066     NR_003563       PI4KAP1
45  chr22   19932380       21490066     NR_003608       TUBA3FP
46  chr22   19932380       21490066     NR_024592     POM121L4P
47  chr22   19932380       21490066     NR_026815      TMEM191A
48  chr22   19932380       21490066     NR_026919     LINC00896
49  chr22   19932380       21490066     NR_027051     THAP7-AS1
51  chr22   19932380       21490066     NR_029706        MIR185
52  chr22   19932380       21490066     NR_030379        MIR649
53  chr22   19932380       21490066     NR_031618       MIR1286
54  chr22   19932380       21490066     NR_031706       MIR1306
55  chr22   19932380       21490066     NR_033825        KLHL22
56  chr22   19932380       21490066     NR_037412       MIR3618
57  chr22   19932380       21490066     NR_037566         BCRP2
58  chr22   19932380       21490066     NR_038460     LOC284865
59  chr22   19932380       21490066     NR_039918       MIR4761
60  chr22   19932380       21490066     NR_106874       MIR6816
61  chr22   19932380       21490066     NR_110537  LOC101928891
62  chr22   19932380       21490066     NR_136560       FAM230A
63  chr22   19932380       21490066     NR_136569     LOC729461
64  chr22   19932380       21490066     NR_136572  LOC101927859
65  chr22   19932380       21490066     NR_136575  LOC102724728
66   chr3   60421524       60677374  NM_001320899          FHIT
67   chr3   60421524       60677374     NR_128708      MIR548BB
68   chr9   41858039       41972414     NR_003670        FGF7P3
69   chr9   41858039       41972414     NR_015363         GLIDR,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1   87444944       87587675  NM_001134492       HS2ST1
2  chr20   14753379       14920488     NM_080676      MACROD2
3  chr20   14753379       14920488     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11   83613562       85284208  NM_001142699           DLG2
4   chr16   14815253       15327993  NM_001270767          NTAN1
5   chr16   14815253       15327993  NM_001277323         NPIPA3
7   chr16   14815253       15327993  NM_001277324         NPIPA2
9   chr16   14815253       15327993  NM_001285445         PDXDC1
14  chr16   14815253       15327993  NM_001301064           RRN3
16  chr16   14815253       15327993     NM_006985         NPIPA1
17  chr16   14815253       15327993     NM_014287          NOMO1
18  chr16   14815253       15327993     NR_023387        ABCC6P2
19  chr16   14815253       15327993     NR_036140      MIR3179-1
20  chr16   14815253       15327993     NR_036141      MIR3180-1
21  chr16   14815253       15327993     NR_036142      MIR3180-2
22  chr16   14815253       15327993     NR_037466      MIR3180-4
23  chr16   14815253       15327993     NR_103772   LOC100288162
24  chr16   14815253       15327993     NR_106775      MIR6511B1
25  chr16   14815253       15327993     NR_106965      MIR6511B2
26  chr16   14815253       15327993     NR_106970      MIR6511A3
27  chr16   14815253       15327993     NR_107060      MIR6770-2
28  chr16   14815253       15327993     NR_123721  PKD1P6-NPIPP1
30  chr16   14815253       15327993     NR_125434   LOC100505915
31  chr16   14815253       15327993     NR_128713      MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21797441       21975884  NM_001163380      RAB2B
1   chr14   21797441       21975884  NM_001170629       CHD8
2   chr14   21797441       21975884  NM_001303523       TOX4
3   chr14   21797441       21975884     NM_007192    SUPT16H
4   chr14   21797441       21975884     NM_019852     METTL3
5   chr14   21797441       21975884     NM_020366    RPGRIP1
8   chr14   21797441       21975884     NR_002916     SNORD8
9   chr14   21797441       21975884     NR_003029     SNORD9
10   chr2   34208956       34360545     NR_126403  LINC01317
11   chr2   34208956       34360545     NR_132381  LINC01318,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   31353225       31621737  NM_001304274    IMMP1L
1   chr11   31353225       31621737     NM_019040      ELP4
2   chr11   31353225       31621737     NM_181706   DNAJC24
3   chr11   31353225       31621737     NM_181807     DCDC1
4    chr8    6721723        7109410  NM_001302265    DEFA1B
5    chr8    6721723        7109410     NM_001925     DEFA4
6    chr8    6721723        7109410     NM_001926     DEFA6
7    chr8    6721723        7109410     NM_004084     DEFA1
9    chr8    6721723        7109410     NM_005217     DEFA3
10   chr8    6721723        7109410     NM_005218     DEFB1
11   chr8    6721723        7109410     NM_021010     DEFA5
12   chr8    6721723        7109410     NR_029386   DEFA10P
13   chr8    6721723        7109410     NR_036686    DEFT1P
15   chr8    6721723        7109410     NR_073407    DEFA8P
16   chr8    6721723        7109410     NR_073408    DEFA9P
17   chr8    6721723        7109410     NR_073421   DEFA11P
18   chr9   41876600       42013033     NR_003670    FGF7P3
19   chr9   41876600       42013033     NR_015363     GLIDR,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr11   89055169       89155933  NM_001143837         NOX4
5  chr20   14644604       14904135     NM_080676      MACROD2
6  chr20   14644604       14904135     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   83716814       83824707  NM_001142699       DLG2
4   chr14   21775436       21896577  NM_001170629       CHD8
5   chr14   21775436       21896577     NM_007192    SUPT16H
6   chr14   21775436       21896577     NM_020366    RPGRIP1
8   chr14   21775436       21896577     NR_002916     SNORD8
9   chr14   21775436       21896577     NR_003029     SNORD9
10  chr15   85709607       85943470  NM_001310153   GOLGA6L3
11  chr15   85709607       85943470     NM_006738     AKAP13
12  chr15   85709607       85943470     NR_049748  LOC642423
13  chr15   85709607       85943470     NR_106993    MIR7706
14  chr16   15383925       15488208  NM_001277325     NPIPA5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81465430       81630017  NM_001278495        NUTM2B
1   chr10   81465430       81630017     NR_029407     LOC642361
2   chr10   81465430       81630017     NR_120611    NUTM2B-AS1
5   chr15   28624757       28797371     NR_033351       GOLGA8F
7   chr15   28624757       28797371     NR_033353       GOLGA8G
9   chr15   28624757       28797371     NR_039734     MIR4509-3
11   chr2   35391971       36851422     NM_005102          FEZ2
12   chr2   35391971       36851422     NM_016441         CRIM1
13   chr2   35391971       36851422     NR_037631  LOC100288911
14   chr2   35391971       36851422     NR_039629      MIR548AD
15   chr2  186600181      186731194     NM_173651         FSIP2
16   chr2  186600181      186731194     NR_110214  LOC101927196
19   chr2  186600181      186731194     NR_144453     FSIP2-AS1
21   chr2  195570305      195749191     NR_110223  LOC101927431,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  215798481      215938128     NM_206933         USH2A
1   chr14   21844089       22109533  NM_001005465        OR10G3
2   chr14   21844089       22109533  NM_001005466        OR10G2
3   chr14   21844089       22109533  NM_001163380         RAB2B
4   chr14   21844089       22109533  NM_001170629          CHD8
5   chr14   21844089       22109533  NM_001303523          TOX4
6   chr14   21844089       22109533     NM_007192       SUPT16H
7   chr14   21844089       22109533     NM_019852        METTL3
10  chr14   21844089       22109533     NR_002916        SNORD8
11  chr14   21844089       22109533     NR_003029        SNORD9
12  chr14   21844089       22109533     NR_111966         SALL2
14  chr15   28600718       28701960     NR_033351       GOLGA8F
15  chr15   28600718       28701960     NR_033353       GOLGA8G
16  chr15   28600718       28701960     NR_039734     MIR4509-3
17   chr7  133210866      133488600     NM_021807         EXOC4
18   chr7  133210866      133488600     NR_120513  LOC101928861,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21926835       22056096  NM_001005465    OR10G3
1  chr14   21926835       22056096  NM_001163380     RAB2B
2  chr14   21926835       22056096  NM_001303523      TOX4
3  chr14   21926835       22056096     NM_019852    METTL3
5  chr14   21926835       22056096     NR_111966     SALL2
7   chr3    2249927        2588044  NM_001206955     CNTN4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  132236907      132424983  NM_001012393         OPCML
3   chr16   21466265       21863237  NM_001077180        METTL9
4   chr16   21466265       21863237  NM_001161683          OTOA
6   chr16   21466265       21863237  NM_001310148        NPIPB4
7   chr16   21466265       21863237     NM_005849         IGSF6
10  chr16   21466265       21863237     NR_002594      SLC7A5P2
11  chr16   21466265       21863237     NR_003370        RRN3P1
12  chr16   21466265       21863237     NR_027155        SMG1P3
13  chr16   21466265       21863237     NR_049833     MIR3680-2
14  chr16   21466265       21863237     NR_110930  LOC101927814
15  chr20   14682500       14829501     NM_080676       MACROD2
16  chr22   20080837       20285843  NM_001190326         DGCR8
17  chr22   20080837       20285843  NM_001243537       CCDC188
18  chr22   20080837       20285843  NM_001278639        RANBP1
21  chr22   20080837       20285843     NM_013373        ZDHHC8
22  chr22   20080837       20285843     NM_022727        TRMT2A
23  chr22   20080837       20285843     NM_023004         RTN4R
24  chr22   20080837       20285843     NR_026919     LINC00896
25  chr22   20080837       20285843     NR_031618       MIR1286
26  chr22   20080837       20285843     NR_038460     LOC284865
27  chr22   20080837       20285843     NR_106874       MIR6816
28   chr4   69265272       69426564     NM_001077       UGT2B17
29   chr4   69265272       69426564     NM_014058     TMPRSS11E
30   chr9   67126461       67890051     NR_002817        AQP7P1
31   chr9   67126461       67890051     NR_027422        FAM27B
32   chr9   67126461       67890051     NR_103833       FAM27E3
33   chr9   67126461       67890051     NR_121606  LOC102723709
34   chr9   67126461       67890051     NR_136300  LOC102724580
35   chr9   67126461       67890051     NR_144466  LOC105379807,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    7122556        7561668  NM_001018039        SFMBT2
2   chr10    7122556        7561668     NR_132972      SNORD129
3   chr14   21769772       22020099  NM_001163380         RAB2B
4   chr14   21769772       22020099  NM_001170629          CHD8
5   chr14   21769772       22020099  NM_001303523          TOX4
6   chr14   21769772       22020099     NM_007192       SUPT16H
7   chr14   21769772       22020099     NM_019852        METTL3
8   chr14   21769772       22020099     NM_020366       RPGRIP1
11  chr14   21769772       22020099     NR_002916        SNORD8
12  chr14   21769772       22020099     NR_003029        SNORD9
13  chr14   21769772       22020099     NR_111966         SALL2
15  chr14   61813620       62055747     NM_006255         PRKCH
16  chr14   61813620       62055747     NR_039985      FLJ22447
17  chr14   61813620       62055747     NR_110416  LOC101927780
19  chr17   63500811       63655127  NM_001037325        CEP112
22  chr17   63500811       63655127     NM_004655         AXIN2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  143757979      143876019  NM_001123068    PPIAL4G
1    chr1  193308401      193420702     NR_125789  LINC01031
2   chr10  135277912      135681576     NM_000773     CYP2E1
3   chr10  135277912      135681576  NM_001080998      FRG2B
4   chr10  135277912      135681576  NM_001143763      SYCE1
7   chr10  135277912      135681576     NR_002934     SCART1
8   chr10  135277912      135681576     NR_033789     SPRNP1
9   chr14   21829420       22147809  NM_001001912      OR4E2
10  chr14   21829420       22147809  NM_001005465     OR10G3
11  chr14   21829420       22147809  NM_001005466     OR10G2
12  chr14   21829420       22147809  NM_001163380      RAB2B
13  chr14   21829420       22147809  NM_001170629       CHD8
14  chr14   21829420       22147809  NM_001303523       TOX4
15  chr14   21829420       22147809  NM_001317107      OR4E1
16  chr14   21829420       22147809     NM_007192    SUPT16H
17  chr14   21829420       22147809     NM_019852     METTL3
20  chr14   21829420       22147809     NR_002916     SNORD8
21  chr14   21829420       22147809     NR_003029     SNORD9
22  chr14   21829420       22147809     NR_111966      SALL2
24   chr5   22791470       22982594     NM_004061      CDH12,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48428533       48573970  NM_001005512    OR4A47
1  chr16   68602810       68744533  NM_001305204     ZFP90
2  chr16   68602810       68744533  NM_001317195      CDH3
3  chr20   14634538       14748917     NM_080676   MACROD2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  112438832      112637617  NM_001270945  LOC643355
1    chr1  112438832      112637617     NM_172198      KCND3
2    chr1  112438832      112637617     NR_046619  KCND3-AS1
3   chr14   21859976       22070623  NM_001005465     OR10G3
4   chr14   21859976       22070623  NM_001163380      RAB2B
5   chr14   21859976       22070623  NM_001170629       CHD8
6   chr14   21859976       22070623  NM_001303523       TOX4
7   chr14   21859976       22070623     NM_019852     METTL3
10  chr14   21859976       22070623     NR_002916     SNORD8
11  chr14   21859976       22070623     NR_003029     SNORD9
12  chr14   21859976       22070623     NR_111966      SALL2
14  chr15   98258719       98418328     NR_024172  LINC00923
15   chr6  116588902      116713542  NM_001322939        DSE
18   chr6  116588902      116713542     NM_003309     TSPYL1
21   chr7   11780708       12051659     NM_015204     THSD7A,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21803855       22070924  NM_001005465    OR10G3
1   chr14   21803855       22070924  NM_001163380     RAB2B
2   chr14   21803855       22070924  NM_001170629      CHD8
3   chr14   21803855       22070924  NM_001303523      TOX4
4   chr14   21803855       22070924     NM_007192   SUPT16H
5   chr14   21803855       22070924     NM_019852    METTL3
6   chr14   21803855       22070924     NM_020366   RPGRIP1
9   chr14   21803855       22070924     NR_002916    SNORD8
10  chr14   21803855       22070924     NR_003029    SNORD9
11  chr14   21803855       22070924     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   21933480       22055975  NM_001005465      OR10G3
1   chr14   21933480       22055975  NM_001163380       RAB2B
2   chr14   21933480       22055975  NM_001303523        TOX4
3   chr14   21933480       22055975     NM_019852      METTL3
5   chr14   21933480       22055975     NR_111966       SALL2
7   chr14   42119982       42382423  NM_001346175       LRFN5
8    chr3  118657846      118759113  NM_001015887      IGSF11
10   chr3  118657846      118759113     NR_046230  IGSF11-AS1
11   chr7   94230377       94507771  NM_001184962       PEG10
12   chr7   94230377       94507771  NM_001301139        SGCE
13   chr8   86691178       87521393  NM_001286707       RMDN1
15   chr8   86691178       87521393     NM_007013        WWP1
16   chr8   86691178       87521393     NM_033126       PSKH2
17   chr8   86691178       87521393     NM_138817     SLC7A13
18   chr8   86691178       87521393     NM_152565    ATP6V0D2
19   chr8   86691178       87521393     NR_003594    REXO1L2P,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   18491318       18678203  NM_001004060      NOMO2
1  chr16   18491318       18678203     NR_003569    ABCC6P1
2  chr16   18491318       18678203     NR_036140  MIR3179-1
3  chr16   18491318       18678203     NR_036142  MIR3180-2
4  chr16   18491318       18678203     NR_036144  MIR3180-3
5  chr16   18491318       18678203     NR_037442  MIR3670-1
6   chr2   51161806       51263581  NM_001330079      NRXN1
9   chr2   51161806       51263581     NR_135237  LOC730100,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  176979308      177161064  NM_001286164      ASTN1
2    chr1  176979308      177161064     NM_021165     BRINP2
4    chr1  176979308      177161064     NR_030163     MIR488
5   chr12   80959117       81072027  NM_001145026      PTPRQ
6   chr13   88037631       88380865     NM_015567    SLITRK5
7   chr13   88037631       88380865     NR_033829  MIR4500HG
8   chr13   88037631       88380865     NR_039722    MIR4500
9   chr14   21902015       22104461  NM_001005465     OR10G3
10  chr14   21902015       22104461  NM_001005466     OR10G2
11  chr14   21902015       22104461  NM_001163380      RAB2B
12  chr14   21902015       22104461  NM_001303523       TOX4
13  chr14   21902015       22104461     NM_019852     METTL3
14  chr14   21902015       22104461     NM_020920       CHD8
16  chr14   21902015       22104461     NR_111966      SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245005769      245544663  NM_001143943        EFCAB2
2    chr1  245005769      245544663  NM_001312871         COX20
4    chr1  245005769      245544663     NM_004501        HNRNPU
5    chr1  245005769      245544663     NM_018012        KIF26B
8    chr1  245005769      245544663     NR_111907  LOC101928068
9    chr1  245005769      245544663     NR_132782      SNORA100
10  chr14   21757050       21873757  NM_001170629          CHD8
11  chr14   21757050       21873757     NM_007192       SUPT16H
12  chr14   21757050       21873757     NM_020366       RPGRIP1
14  chr14   21757050       21873757     NR_002916        SNORD8
15  chr14   21757050       21873757     NR_003029        SNORD9,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21769802       21914726  NM_001170629      CHD8
1  chr14   21769802       21914726     NM_007192   SUPT16H
2  chr14   21769802       21914726     NM_020366   RPGRIP1
4  chr14   21769802       21914726     NR_002916    SNORD8
5  chr14   21769802       21914726     NR_003029    SNORD9
6  chr16   68561799       68729250  NM_001305204     ZFP90
8  chr16   68561799       68729250  NM_001317195      CDH3
9   chr9  108438188      108539954     NM_018112   TMEM38B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143715446      146259721  NM_001002810       PDE4DIP
3    chr1  143715446      146259721  NM_001012758        NUDT17
4    chr1  143715446      146259721  NM_001039888      ANKRD34A
5    chr1  143715446      146259721  NM_001097612        GPR89A
6    chr1  143715446      146259721  NM_001101663        NBPF11
7    chr1  143715446      146259721  NM_001123068       PPIAL4G
8    chr1  143715446      146259721  NM_001135789       PPIAL4C
9    chr1  143715446      146259721  NM_001184795        PEX11B
14   chr1  143715446      146259721  NM_001201325         PDZK1
15   chr1  143715446      146259721  NM_001277444         NBPF9
16   chr1  143715446      146259721  NM_001278267        NBPF20
17   chr1  143715446      146259721  NM_001280799       ANKRD35
18   chr1  143715446      146259721  NM_001287385        FAM72C
19   chr1  143715446      146259721  NM_001302371        NBPF10
20   chr1  143715446      146259721  NM_001303040        ITGA10
21   chr1  143715446      146259721  NM_001303456        POLR3C
22   chr1  143715446      146259721  NM_001313972         TXNIP
23   chr1  143715446      146259721  NM_001345942        FAM72D
27   chr1  143715446      146259721     NM_004892        SEC22B
28   chr1  143715446      146259721     NM_005105         RBM8A
29   chr1  143715446      146259721     NM_006099         PIAS3
32   chr1  143715446      146259721     NM_007053         CD160
33   chr1  143715446      146259721     NM_014455        RNF115
35   chr1  143715446      146259721     NM_032305       POLR3GL
36   chr1  143715446      146259721     NM_145277          HFE2
37   chr1  143715446      146259721     NM_153713         LIX1L
38   chr1  143715446      146259721     NM_203458      NOTCH2NL
40   chr1  143715446      146259721     NR_002328        GNRHR2
41   chr1  143715446      146259721     NR_003242        PFN1P2
42   chr1  143715446      146259721     NR_024511     LINC00623
45   chr1  143715446      146259721     NR_102405         NBPF8
46   chr1  143715446      146259721     NR_104014     LINC01138
49   chr1  143715446      146259721     NR_104217       NBPF25P
51   chr1  143715446      146259721     NR_106794       MIR6736
53   chr1  143715446      146259721     NR_111930  LOC100132057
54   chr1  143715446      146259721     NR_111936       PDZK1P1
55   chr1  143715446      146259721     NR_111953     LINC00869
56   chr1  143715446      146259721     NR_125967  LOC101928979
57   chr1  143715446      146259721     NR_135559  LOC100505824
59  chr17   70957933       71173929     NM_001050         SSTR2
60  chr17   70957933       71173929     NM_139177      SLC39A11
61   chr5  142387643      142702705     NM_000176         NR3C1
64   chr5  142387643      142702705  NM_001135608      ARHGAP26
66   chr5  142387643      142702705     NR_046816  ARHGAP26-IT1
67   chr8  135672384      136015618  NM_001174158          ZFAT
69   chr8  135672384      136015618     NR_029599        MIR30D
70   chr8  135672384      136015618     NR_029666        MIR30B
71   chr8  135672384      136015618     NR_125427  LOC101927845
72   chr8  135672384      136015618     NR_126028    NCRNA00250,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143638787      144066684  NM_001123068       PPIAL4G
1    chr1  143638787      144066684  NM_001287385        FAM72C
2    chr1  143638787      144066684  NM_001345942        FAM72D
6    chr1  143638787      144066684     NR_104014     LINC01138
7    chr1  143638787      144066684     NR_106967       MIR6077
8    chr1  143638787      144066684     NR_111930  LOC100132057
10  chr12   80956514       81165418  NM_001145026         PTPRQ
11  chr12   80956514       81165418     NM_002469          MYF6
12  chr12   80956514       81165418     NM_005593          MYF5
13  chr12   80956514       81165418     NR_120468     LINC01490
14  chr21   22364899       22516678     NM_004540         NCAM2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48363414       48673603  NM_001005512    OR4A47
1  chr11   48363414       48673603  NM_001005513    OR4C45
2  chr14   21781233       21887692  NM_001170629      CHD8
3  chr14   21781233       21887692     NM_007192   SUPT16H
4  chr14   21781233       21887692     NM_020366   RPGRIP1
6  chr14   21781233       21887692     NR_002916    SNORD8
7  chr14   21781233       21887692     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143130562      143458729     NR_110761  LOC102723769
1   chr14   21841734       21951397  NM_001163380         RAB2B
2   chr14   21841734       21951397  NM_001170629          CHD8
3   chr14   21841734       21951397  NM_001303523          TOX4
4   chr14   21841734       21951397     NM_007192       SUPT16H
7   chr14   21841734       21951397     NR_002916        SNORD8
8   chr14   21841734       21951397     NR_003029        SNORD9
9   chr14   40717709       42306314  NM_001346175         LRFN5
10  chr14   40717709       42306314     NR_109757     LOC644919
12  chr20    9109259        9222549  NM_001172646         PLCB4
14  chr20   21972931       22121178     NR_038394     LINC01432
15   chr7  110639308      110775817  NM_001099658         LRRN3
16   chr7  110639308      110775817  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr16   83034424       83203881  NM_001220488     CDH13
2   chr5   23997059       24750412  NM_001317222     CDH10
4   chr5   23997059       24750412     NR_131245   C5orf17
5   chr8    7894491        8173130     NR_024361  FAM86B3P
8   chr8    7894491        8173130     NR_031689  MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17243808       17601162  NM_001037814          GAB4
1   chr22   17243808       17601162  NM_001163079         CECR6
2   chr22   17243808       17601162  NM_001289905        IL17RA
4   chr22   17243808       17601162     NM_175878          XKR3
5   chr22   17243808       17601162     NR_003607       HSFY1P1
6   chr22   17243808       17601162     NR_015352         CECR7
7    chr7   64030137       64584033  NM_001007253        ERV3-1
8    chr7   64030137       64584033  NM_001160183        ZNF138
9    chr7   64030137       64584033  NM_001282360        ZNF107
10   chr7   64030137       64584033     NM_015852        ZNF117
11   chr7   64030137       64584033     NM_021148        ZNF273
12   chr7   64030137       64584033     NR_033245     LOC641746
13   chr7   64030137       64584033     NR_033416        CCT6P3
15   chr7   64030137       64584033     NR_077227  LOC100128885
17   chr7   64030137       64584033     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   80789240       80959278  NM_001318536         SPRY2
3   chr17    3831442        3940098     NM_015113         ZZEF1
4   chr17    3831442        3940098     NM_174955        ATP2A3
5    chr2   25211902       25333646  NM_001319099         EFR3B
7    chr2   25211902       25333646     NR_034113   DNAJC27-AS1
8   chr22   17202387       17684557  NM_001037814          GAB4
9   chr22   17202387       17684557  NM_001163079         CECR6
10  chr22   17202387       17684557  NM_001282227         CECR1
12  chr22   17202387       17684557  NM_001289905        IL17RA
13  chr22   17202387       17684557     NM_017829         CECR5
16  chr22   17202387       17684557     NM_175878          XKR3
18  chr22   17202387       17684557     NR_003607       HSFY1P1
19  chr22   17202387       17684557     NR_015352         CECR7
20  chr22   17202387       17684557     NR_024482     CECR5-AS1
21  chr22   17202387       17684557     NR_103793  LOC100996342
22  chr22   17202387       17684557     NR_134584  LOC101929350
23   chr3  192423574      192533602     NM_004113         FGF12
24   chr3  192423574      192533602     NM_178496        MB21D2
25   chr7   79016817       79156401     NM_012301         MAGI2
26   chr7   79016817       79156401     NR_038343     MAGI2-AS3
29   chr7  110608478      111013574  NM_001099658         LRRN3
30   chr7  110608478      111013574  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   95338652       95460825     NM_007084         SOX21
1   chr13   95338652       95460825     NR_046514     SOX21-AS1
2   chr13   95338652       95460825     NR_110754  LOC101927284
3   chr13   95338652       95460825     NR_120417  LOC101927248
4   chr16   18281405       18550620  NM_001004060         NOMO2
5   chr16   18281405       18550620  NM_001282511        NPIPA8
6   chr16   18281405       18550620     NR_036140     MIR3179-1
7   chr16   18281405       18550620     NR_036142     MIR3180-2
8   chr16   18281405       18550620     NR_036144     MIR3180-3
9   chr16   18281405       18550620     NR_037442     MIR3670-1
10  chr16   18281405       18550620     NR_103772  LOC100288162
11  chr16   18281405       18550620     NR_106971     MIR6511A4
12  chr16   18281405       18550620     NR_107060     MIR6770-2
13   chr4   75406084       75657072     NM_001657          AREG
14   chr9   28565657       28773571  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63136722       63532170     NR_047029     LINC00448
3   chr13   71723597       72827088     NM_080759         DACH1
4   chr13   71723597       72827088     NR_047699     LINC00348
5   chr16   18133417       18637402  NM_001004060         NOMO2
6   chr16   18133417       18637402  NM_001282511        NPIPA8
7   chr16   18133417       18637402     NR_003569       ABCC6P1
8   chr16   18133417       18637402     NR_036140     MIR3179-1
9   chr16   18133417       18637402     NR_036142     MIR3180-2
10  chr16   18133417       18637402     NR_036144     MIR3180-3
11  chr16   18133417       18637402     NR_037442     MIR3670-1
12  chr16   18133417       18637402     NR_103772  LOC100288162
13  chr16   18133417       18637402     NR_106971     MIR6511A4
14  chr16   18133417       18637402     NR_107060     MIR6770-2
15   chr9   43266643       43856048  NM_001145196     SPATA31A6
16   chr9   43266643       43856048  NM_001201380      CNTNAP3B
17   chr9   43266643       43856048     NR_111893     CNTNAP3P2
18   chr9   43266643       43856048     NR_126166       FAM74A7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   19922911       20140643  NM_001145442         POTEM
1   chr14   19922911       20140643     NR_110505  LOC100508046
2   chr14   19922911       20140643     NR_110526       DUXAP10
3   chr14   19922911       20140643     NR_122111     LINC01296
5   chr15   28646352       30105803  NM_001130414         APBA2
6   chr15   28646352       30105803  NM_001282468       GOLGA8M
7   chr15   28646352       30105803  NM_001301025          TJP1
10  chr15   28646352       30105803     NM_015307      FAM189A1
11  chr15   28646352       30105803     NM_138704        NSMCE3
12  chr15   28646352       30105803     NR_026589       WHAMMP2
13  chr15   28646352       30105803     NR_033351       GOLGA8F
14  chr15   28646352       30105803     NR_033353       GOLGA8G
15  chr15   28646352       30105803     NR_036443       HERC2P9
16  chr15   28646352       30105803     NR_036475  LOC100289656
17  chr15   28646352       30105803     NR_037599     PDCD6IPP2
18  chr15   28646352       30105803     NR_039734     MIR4509-3
20  chr15   28646352       30105803     NR_047567     GOLGA6L7P
21  chr15   28646352       30105803     NR_135221  LOC100130111
22  chr16   15256283       15601952  NM_001128423        MPV17L
23  chr16   15256283       15601952  NM_001142469      C16orf45
24  chr16   15256283       15601952  NM_001277325        NPIPA5
26  chr21   44834772       45005698  NM_001320643  LOC102724428
27  chr21   44834772       45005698     NM_007031        HSF2BP
28  chr21   44834772       45005698     NM_173354          SIK1
29  chr21   44834772       45005698     NR_026863     LINC00313
30  chr21   44834772       45005698     NR_026960     LINC00319
31  chr21   44834772       45005698     NR_136540  LOC102724354,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30301182       30477519  NM_001282472       GOLGA8J
1   chr15   30301182       30477519     NR_026859        ULK4P3
2   chr15   30301182       30477519     NR_033933       GOLGA8T
3   chr16   18323643       18502086  NM_001282511        NPIPA8
4   chr16   18323643       18502086     NR_036142     MIR3180-2
5   chr16   18323643       18502086     NR_036144     MIR3180-3
6   chr16   18323643       18502086     NR_037442     MIR3670-1
7   chr16   18323643       18502086     NR_103772  LOC100288162
8   chr16   18323643       18502086     NR_106971     MIR6511A4
9   chr16   18323643       18502086     NR_107060     MIR6770-2
10   chr7    3794936        3906580     NM_152744          SDK1
11   chr8    7219193        7359578  NM_001040705      DEFB107B
12   chr8    7219193        7359578  NM_001081551      DEFB103A
13   chr8    7219193        7359578  NM_001164457       ZNF705G
14   chr8    7219193        7359578  NM_001205266        DEFB4B
15   chr8    7219193        7359578     NM_058200       SPAG11B
19   chr8    7219193        7359578     NM_080389      DEFB104A
20   chr8    7219193        7359578     NM_152250      DEFB105A
21   chr8    7219193        7359578     NM_152251      DEFB106A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21896116       22084727  NM_001005465        OR10G3
1   chr14   21896116       22084727  NM_001163380         RAB2B
2   chr14   21896116       22084727  NM_001170629          CHD8
3   chr14   21896116       22084727  NM_001303523          TOX4
4   chr14   21896116       22084727     NM_019852        METTL3
7   chr14   21896116       22084727     NR_111966         SALL2
9   chr15   28791482       28953364  NM_001282468       GOLGA8M
10  chr15   28791482       28953364     NR_036443       HERC2P9
11  chr15   99909185      100038368  NM_001284400        LRRC28
13  chr16   83980800       84091669  NM_001080442       SLC38A8
14  chr16   83980800       84091669     NM_003791        MBTPS1
15  chr16   83980800       84091669     NM_019065        NECAB2
16  chr16   83980800       84091669     NM_182981        OSGIN1
17   chr2  186546489      186669418     NM_173651         FSIP2
18   chr2  186546489      186669418     NR_110214  LOC101927196
21   chr2  186546489      186669418     NR_144453     FSIP2-AS1
23   chr7   64026665       64283126  NM_001160183        ZNF138
24   chr7   64026665       64283126  NM_001282360        ZNF107
25   chr7   64026665       64283126     NR_033245     LOC641746
27   chr7   64026665       64283126     NR_077227  LOC100128885
29   chr7   64026665       64283126     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   48270434       48678311  NM_001004702     OR4C3
1   chr11   48270434       48678311  NM_001004725     OR4S1
2   chr11   48270434       48678311  NM_001004726     OR4X1
3   chr11   48270434       48678311  NM_001005512    OR4A47
4   chr11   48270434       48678311  NM_001005513    OR4C45
5   chr14   21760920       22459630  NM_001001912     OR4E2
6   chr14   21760920       22459630  NM_001005465    OR10G3
7   chr14   21760920       22459630  NM_001005466    OR10G2
8   chr14   21760920       22459630  NM_001163380     RAB2B
9   chr14   21760920       22459630  NM_001170629      CHD8
10  chr14   21760920       22459630  NM_001303523      TOX4
11  chr14   21760920       22459630  NM_001317107     OR4E1
12  chr14   21760920       22459630     NM_007192   SUPT16H
13  chr14   21760920       22459630     NM_019852    METTL3
14  chr14   21760920       22459630     NM_020366   RPGRIP1
17  chr14   21760920       22459630     NR_002916    SNORD8
18  chr14   21760920       22459630     NR_003029    SNORD9
19  chr14   21760920       22459630     NR_111966     SALL2
21   chr2   84634494       84750657     NM_001370     DNAH6
22   chr2   84634494       84750657     NM_003849    SUCLG1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr18   67067162       67218689     NM_152721          DOK6
1   chr18   67067162       67218689     NR_134579  LOC105372179
2   chr19   23408002       23579215  NM_001300951         ZNF91
3   chr19   23408002       23579215     NR_045525        ZNF724
4   chr19   23408002       23579215     NR_103741        IPO5P1
5    chr2   75883832       75990005  NM_001201334         GCFC2
8    chr2   75883832       75990005     NM_014763        MRPL19
9   chr22   17250553       17652036  NM_001037814          GAB4
10  chr22   17250553       17652036  NM_001163079         CECR6
11  chr22   17250553       17652036  NM_001289905        IL17RA
12  chr22   17250553       17652036     NM_017829         CECR5
15  chr22   17250553       17652036     NM_175878          XKR3
16  chr22   17250553       17652036     NR_003607       HSFY1P1
17  chr22   17250553       17652036     NR_015352         CECR7
18  chr22   17250553       17652036     NR_024482     CECR5-AS1
19  chr22   17250553       17652036     NR_103793  LOC100996342,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   21861176       21966926  NM_001163380         RAB2B
1  chr14   21861176       21966926  NM_001170629          CHD8
2  chr14   21861176       21966926  NM_001303523          TOX4
3  chr14   21861176       21966926     NM_019852        METTL3
6  chr14   21861176       21966926     NR_002916        SNORD8
7  chr20   10837455       11155844     NR_109866  LOC101929413,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18282435       18498699  NM_001282511        NPIPA8
1   chr16   18282435       18498699     NR_036142     MIR3180-2
2   chr16   18282435       18498699     NR_036144     MIR3180-3
3   chr16   18282435       18498699     NR_103772  LOC100288162
4   chr16   18282435       18498699     NR_106971     MIR6511A4
5   chr16   18282435       18498699     NR_107060     MIR6770-2
6   chr17    5528398        5865488     NR_040000     LOC339166
7    chr2   84707584       84864073     NM_001370         DNAH6
8    chr2  133070475      133413420  NM_001077427         LYPD1
9    chr2  133070475      133413420  NM_001304449        ZNF806
11   chr2  133070475      133413420     NM_001508         GPR39
12   chr2  133070475      133413420     NR_135203       FAM201B
13   chr5   17746872       18236578     NR_134286     LOC646241
15   chr7   64154548       64396948  NM_001160183        ZNF138
16   chr7   64154548       64396948  NM_001282360        ZNF107
17   chr7   64154548       64396948     NM_021148        ZNF273
19   chr7   75825342       75977859  NM_001110199         SRRM3
20   chr7   75825342       75977859     NM_001540         HSPB1
21   chr7   75825342       75977859     NM_012479         YWHAG
22   chr8   92670447       94056909  NM_001171795         TRIQK
25   chr8   92670447       94056909  NM_001198628       RUNX1T1
31   chr8   92670447       94056909     NR_046114      FLJ46284
32   chr8   92670447       94056909     NR_106988     MIR7641-2
33   chr8   92670447       94056909     NR_107051       MIR8084
34   chr8   92670447       94056909     NR_125827  LOC102724710,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21776744       21884492  NM_001170629       CHD8
1   chr14   21776744       21884492     NM_007192    SUPT16H
2   chr14   21776744       21884492     NM_020366    RPGRIP1
4   chr14   21776744       21884492     NR_002916     SNORD8
5   chr14   21776744       21884492     NR_003029     SNORD9
6   chr18   35101338       35667211     NM_020180      CELF4
7   chr18   35101338       35667211     NR_036202    MIR4318
8    chr3    4173054        4671524  NM_001164675      SUMF1
9    chr3    4173054        4671524  NM_001168272      ITPR1
10   chr3    4173054        4671524  NM_001243723     SETMAR
12   chr3    4173054        4671524     NR_108075  ITPR1-AS1
13   chr4  133434777      133548067     NR_126401  LINC01256
14   chr7  110776822      110927177  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27583163       28249363  NM_001034842        PTCHD3
1   chr10   27583163       28249363  NM_001242702           MKX
2   chr10   27583163       28249363  NM_001256411         RAB18
3   chr10   27583163       28249363  NM_001290020         ARMC4
7   chr10   27583163       28249363     NR_121652       MKX-AS1
8   chr10   27583163       28249363     NR_138082       ARMC4P1
9   chr16   18284436       19062357  NM_001004060         NOMO2
10  chr16   18284436       19062357     NM_001019        RPS15A
11  chr16   18284436       19062357  NM_001160364          TMC7
12  chr16   18284436       19062357  NM_001282511        NPIPA8
14  chr16   18284436       19062357  NM_001313858       ARL6IP1
16  chr16   18284436       19062357     NM_015092          SMG1
18  chr16   18284436       19062357     NR_003569       ABCC6P1
19  chr16   18284436       19062357     NR_036140     MIR3179-1
20  chr16   18284436       19062357     NR_036142     MIR3180-2
21  chr16   18284436       19062357     NR_036144     MIR3180-3
22  chr16   18284436       19062357     NR_037442     MIR3670-1
23  chr16   18284436       19062357     NR_103772  LOC100288162
24  chr16   18284436       19062357     NR_106971     MIR6511A4
25  chr16   18284436       19062357     NR_107060     MIR6770-2
26  chr17      54564         160940  NM_001190411        RPH3AL
27   chr3    1340382        4148808  NM_001173482          CRBN
28   chr3    1340382        4148808  NM_001206955         CNTN4
30   chr3    1340382        4148808  NM_001289081         CNTN6
31   chr3    1340382        4148808  NM_001302946         TRNT1
32   chr3    1340382        4148808  NM_001324189         LRRN1
34   chr3    1340382        4148808     NM_175726         IL5RA
37   chr3    1340382        4148808     NR_046554     CNTN4-AS1
38   chr3    1340382        4148808     NR_046555     CNTN4-AS2
39   chr7   64074224       64322402  NM_001160183        ZNF138
40   chr7   64074224       64322402  NM_001282360        ZNF107
42   chr7   64074224       64322402     NR_077227  LOC100128885
44   chr7   64074224       64322402     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21816019       21937261  NM_001163380        RAB2B
1   chr14   21816019       21937261  NM_001170629         CHD8
2   chr14   21816019       21937261     NM_007192      SUPT16H
3   chr14   21816019       21937261     NM_020366      RPGRIP1
6   chr14   21816019       21937261     NR_002916       SNORD8
7   chr14   21816019       21937261     NR_003029       SNORD9
8   chr20   14727306       14874318     NM_080676      MACROD2
9   chr20   14727306       14874318     NR_037841  MACROD2-AS1
10   chr8     201337         980385  NM_001256113         TDRP
11   chr8     201337         980385  NM_001303100       ERICH1
12   chr8     201337         980385  NM_001346810       DLGAP2
13   chr8     201337         980385     NM_012173       FBXO25
16   chr8     201337         980385     NR_073397   ERICH1-AS1
17   chr8     201337         980385     NR_103537       FAM87A
18   chr8     201337         980385     NR_134292    LOC401442,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2   53473155       54919939  NM_001003937        TSPYL6
1    chr2   53473155       54919939  NM_001100396       C2orf73
2    chr2   53473155       54919939  NM_001164165    GPR75-ASB3
3    chr2   53473155       54919939  NM_001201965          ASB3
4    chr2   53473155       54919939  NM_001320587         ACYP2
7    chr2   53473155       54919939  NM_001346127         CHAC2
8    chr2   53473155       54919939     NM_003128        SPTBN1
9    chr2   53473155       54919939     NM_006794         GPR75
10   chr2   53473155       54919939     NM_014614         PSME4
11   chr2   53473155       54919939     NM_015701        ERLEC1
15   chr2   53473155       54919939     NR_002229     RPL23AP32
16   chr2   53473155       54919939     NR_037453       MIR3682
17  chr22   17267700       17612307  NM_001037814          GAB4
18  chr22   17267700       17612307  NM_001163079         CECR6
19  chr22   17267700       17612307  NM_001289905        IL17RA
21  chr22   17267700       17612307     NM_175878          XKR3
22  chr22   17267700       17612307     NR_003607       HSFY1P1
23  chr22   17267700       17612307     NR_015352         CECR7
24  chr22   17267700       17612307     NR_103793  LOC100996342
25   chr4   98405813       99003220     NM_174952         STPG2
26   chr4   98405813       99003220     NR_102713     STPG2-AS1
27   chr8    3997703        4108572     NM_033225         CSMD1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   61840935       62024446     NM_006255         PRKCH
1  chr14   61840935       62024446     NR_110416  LOC101927780
3  chr15   30290782       30746991  NM_001282472       GOLGA8J
4  chr15   30290782       30746991  NM_001282484       GOLGA8R
5  chr15   30290782       30746991     NM_139320      CHRFAM7A
6  chr15   30290782       30746991     NR_026771  DKFZP434L187
7  chr15   30290782       30746991     NR_026859        ULK4P3
8  chr15   30290782       30746991     NR_033933       GOLGA8T,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   56541524       56929211  NM_001142770    PCDH15
3   chr14   21822406       22069894  NM_001005465    OR10G3
4   chr14   21822406       22069894  NM_001163380     RAB2B
5   chr14   21822406       22069894  NM_001170629      CHD8
6   chr14   21822406       22069894  NM_001303523      TOX4
7   chr14   21822406       22069894     NM_007192   SUPT16H
8   chr14   21822406       22069894     NM_019852    METTL3
11  chr14   21822406       22069894     NR_002916    SNORD8
12  chr14   21822406       22069894     NR_003029    SNORD9
13  chr14   21822406       22069894     NR_111966     SALL2
15   chr3  155607950      155740790     NM_003875      GMPS,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   31397774       31512012  NM_001304274    IMMP1L
1   chr11   31397774       31512012     NM_181706   DNAJC24
2   chr14   21792451       21942806  NM_001163380     RAB2B
3   chr14   21792451       21942806  NM_001170629      CHD8
4   chr14   21792451       21942806     NM_007192   SUPT16H
5   chr14   21792451       21942806     NM_020366   RPGRIP1
8   chr14   21792451       21942806     NR_002916    SNORD8
9   chr14   21792451       21942806     NR_003029    SNORD9
10   chr2  110136147      110490069  NM_001099289    SH3RF3
11   chr2  110136147      110490069  NM_001321504    SEPT10
13   chr2  110136147      110490069     NM_023016    SOWAHC
14   chr2  133101425      133213104     NM_001508     GPR39
15   chr2  133101425      133213104     NR_135203   FAM201B
16   chr7  110682783      110791182  NM_001099658     LRRN3
17   chr7  110682783      110791182  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21812142       22972635  NM_001001912     OR4E2
1   chr14   21812142       22972635  NM_001005465    OR10G3
2   chr14   21812142       22972635  NM_001005466    OR10G2
3   chr14   21812142       22972635  NM_001163380     RAB2B
4   chr14   21812142       22972635  NM_001170629      CHD8
5   chr14   21812142       22972635  NM_001303523      TOX4
6   chr14   21812142       22972635  NM_001317107     OR4E1
7   chr14   21812142       22972635     NM_007192   SUPT16H
8   chr14   21812142       22972635     NM_019852    METTL3
9   chr14   21812142       22972635     NM_020366   RPGRIP1
12  chr14   21812142       22972635     NR_002916    SNORD8
13  chr14   21812142       22972635     NR_003029    SNORD9
14  chr14   21812142       22972635     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21934741       22053367  NM_001005465    OR10G3
1   chr14   21934741       22053367  NM_001163380     RAB2B
2   chr14   21934741       22053367  NM_001303523      TOX4
3   chr14   21934741       22053367     NM_019852    METTL3
5   chr14   21934741       22053367     NR_111966     SALL2
7    chr4    9032564        9657125  NM_001040448   DEFB131
8    chr4    9032564        9657125  NM_001242326  USP17L25
16   chr4    9032564        9657125  NM_001256852  USP17L10
17   chr4    9032564        9657125  NM_001256853  USP17L12
19   chr4    9032564        9657125  NM_001256854  USP17L11
22   chr4    9032564        9657125  NM_001256855  USP17L13
23   chr4    9032564        9657125  NM_001256857  USP17L17
24   chr4    9032564        9657125  NM_001256860  USP17L19
25   chr4    9032564        9657125  NM_001256861  USP17L20
26   chr4    9032564        9657125  NM_001256894  USP17L15
27   chr4    9032564        9657125     NR_027279  USP17L6P
28   chr4    9032564        9657125     NR_031688  MIR548I2
29   chr4    9032564        9657125     NR_046416  USP17L9P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27236530       27437947     NM_015000        STK38L
1   chr14   67469764       67711617  NM_001256550          MPP5
2   chr14   67469764       67711617     NM_020806          GPHN
3   chr14   67469764       67711617     NM_173526        FAM71D
4   chr18   67109140       67259445     NM_152721          DOK6
5   chr18   67109140       67259445     NR_134579  LOC105372179
6   chr20   14903173       15055275     NM_080676       MACROD2
7   chr20   14903173       15055275     NR_037841   MACROD2-AS1
9    chr4  128731660      129165944  NM_001190801          PLK4
10   chr4  128731660      129165944  NM_001278604        LARP1B
11   chr4  128731660      129165944  NM_001317381        HSPA4L
14   chr4  128731660      129165944  NM_001319305        ABHD18
17   chr4  128731660      129165944     NM_152778         MFSD8
19   chr7  110627324      110764968  NM_001099658         LRRN3
20   chr7  110627324      110764968  NM_001244606        IMMP2L
22   chr7  110601701      110738330  NM_001099658         LRRN3
23   chr7  110601701      110738330  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    6655393        6862317  NM_001004489        OR2AG1
1   chr11    6655393        6862317  NM_001004490        OR2AG2
2   chr11    6655393        6862317     NM_003696         OR6A2
3   chr11    6655393        6862317     NM_003737         DCHS1
4   chr11    6655393        6862317     NM_022061        MRPL17
5   chr11    6655393        6862317     NR_003945        GVINP1
6   chr12   16401764       16753879  NM_001001395          LMO3
7   chr12   16401764       16753879  NM_001170798       SLC15A5
12  chr12   16401764       16753879  NM_001267598         MGST1
18  chr16   16397068       16497132  NM_001282511        NPIPA8
19  chr16   16397068       16497132     NR_036141     MIR3180-1
20  chr16   16397068       16497132     NR_036142     MIR3180-2
21  chr16   16397068       16497132     NR_036447        PKD1P1
22  chr16   16397068       16497132     NR_103772  LOC100288162
23  chr16   16397068       16497132     NR_106766     MIR6511A1
24  chr16   16397068       16497132     NR_106971     MIR6511A4
25  chr16   16397068       16497132     NR_107060     MIR6770-2
26  chr16   16397068       16497132     NR_128713     MIR3670-4
27  chr17      24096         129185  NM_001190411        RPH3AL
28  chr17      24096         129185     NM_003585         DOC2B
29  chr17      24096         129185     NR_104420  LOC100506371
30   chr2   62215262       62344220  NM_001321781        COMMD1
32   chr5  154243186      154388379  NM_001014990        MRPL22
33   chr5  154243186      154388379  NM_001301074         CNOT8
36   chr5  154243186      154388379     NM_015465        GEMIN5,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21751660       22129515  NM_001005465    OR10G3
1   chr14   21751660       22129515  NM_001005466    OR10G2
2   chr14   21751660       22129515  NM_001163380     RAB2B
3   chr14   21751660       22129515  NM_001170629      CHD8
4   chr14   21751660       22129515  NM_001303523      TOX4
5   chr14   21751660       22129515     NM_007192   SUPT16H
6   chr14   21751660       22129515     NM_019852    METTL3
7   chr14   21751660       22129515     NM_020366   RPGRIP1
10  chr14   21751660       22129515     NR_002916    SNORD8
11  chr14   21751660       22129515     NR_003029    SNORD9
12  chr14   21751660       22129515     NR_111966     SALL2
14  chr15   78364641       78474773  NM_001101404     SH2D7
15  chr15   78364641       78474773  NM_001199377    ACSBG1
16  chr15   78364641       78474773  NM_001301224      CIB2
17  chr15   78364641       78474773     NM_005530     IDH3A
18  chr15   78364641       78474773     NM_015079   TBC1D2B
19   chr7  110501006      110627607  NM_001244606    IMMP2L
21   chr9     144093         763357  NM_001145355     CBWD1
22   chr9     144093         763357  NM_001190458     DOCK8
23   chr9     144093         763357  NM_001256876     KANK1
25   chr9     144093         763357     NM_152569   C9orf66,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr10   27644500       27953889  NM_001034842         PTCHD3
1   chr10   27644500       27953889  NM_001256411          RAB18
2   chr16   14732573       15214743  NM_001270767          NTAN1
3   chr16   14732573       15214743  NM_001277323         NPIPA3
5   chr16   14732573       15214743  NM_001277324         NPIPA2
7   chr16   14732573       15214743  NM_001285445         PDXDC1
12  chr16   14732573       15214743  NM_001301064           RRN3
14  chr16   14732573       15214743     NM_006985         NPIPA1
15  chr16   14732573       15214743     NM_014287          NOMO1
16  chr16   14732573       15214743     NM_016561           BFAR
17  chr16   14732573       15214743     NR_023387        ABCC6P2
18  chr16   14732573       15214743     NR_036140      MIR3179-1
19  chr16   14732573       15214743     NR_036141      MIR3180-1
20  chr16   14732573       15214743     NR_036142      MIR3180-2
21  chr16   14732573       15214743     NR_103772   LOC100288162
22  chr16   14732573       15214743     NR_106970      MIR6511A3
23  chr16   14732573       15214743     NR_107060      MIR6770-2
24  chr16   14732573       15214743     NR_123721  PKD1P6-NPIPP1
26  chr16   14732573       15214743     NR_125434   LOC100505915
27  chr16   14732573       15214743     NR_128713      MIR3670-4
28  chr16   14732573       15214743     NR_133651        PLA2G10
29   chr7  110716199      111836856  NM_001099658          LRRN3
30   chr7  110716199      111836856  NM_001244606         IMMP2L
31   chr7  110716199      111836856     NM_014705          DOCK4
33   chr7  110716199      111836856     NR_103806      DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1  162809069      162938860     NM_178550     CCDC190
1   chr10   81431927       81580174  NM_001278495      NUTM2B
2   chr10   81431927       81580174     NR_027512     BEND3P3
3   chr10   81431927       81580174     NR_120611  NUTM2B-AS1
6   chr14   21907897       22359262  NM_001001912       OR4E2
7   chr14   21907897       22359262  NM_001005465      OR10G3
8   chr14   21907897       22359262  NM_001005466      OR10G2
9   chr14   21907897       22359262  NM_001163380       RAB2B
10  chr14   21907897       22359262  NM_001303523        TOX4
11  chr14   21907897       22359262  NM_001317107       OR4E1
12  chr14   21907897       22359262     NM_019852      METTL3
14  chr14   21907897       22359262     NR_111966       SALL2
16  chr15   21118334       21721238     NR_028506       NF1P2
17  chr15   21118334       21721238     NR_040094   LINC01193
18  chr15   21118334       21721238     NR_049895   MIR5701-2
19   chr4   69322825       69430573     NM_001077     UGT2B17
20   chr4   69322825       69430573     NM_014058   TMPRSS11E
21   chr8   48429977       48611476  NM_001080394       SPIDR
22   chr9   26555317       27439525     NM_000459         TEK
23   chr9   26555317       27439525  NM_001031689        PLAA
24   chr9   26555317       27439525  NM_001099222       IFT74
27   chr9   26555317       27439525  NM_001161585        EQTN
28   chr9   26555317       27439525  NM_001167575       CAAP1
30   chr9   26555317       27439525     NM_022901      LRRC19
31   chr9   26555317       27439525     NM_024761       MOB3B
33   chr9   26555317       27439525     NR_026679   LINC00032
34   chr9   26555317       27439525     NR_121605   IFT74-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   25099554       25537612  NM_001009909     LUZP2
1   chr11   83668662       83899441  NM_001142699      DLG2
5   chr14   21780644       21883476  NM_001170629      CHD8
6   chr14   21780644       21883476     NM_007192   SUPT16H
7   chr14   21780644       21883476     NM_020366   RPGRIP1
9   chr14   21780644       21883476     NR_002916    SNORD8
10  chr14   21780644       21883476     NR_003029    SNORD9
11   chr8    7866160        8007357     NR_027424    FAM66E
12   chr8    7866160        8007357     NR_031689  MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143524943      143868443  NM_001123068       PPIAL4G
1    chr1  143524943      143868443     NR_104014     LINC01138
2    chr1  143524943      143868443     NR_106967       MIR6077
3    chr1  143524943      143868443     NR_111930  LOC100132057
4   chr11   20823011       20961939  NM_001288713         NELL1
5   chr16   18138459       19611137  NM_001004060         NOMO2
6   chr16   18138459       19611137     NM_001019        RPS15A
7   chr16   18138459       19611137  NM_001105249          TMC5
8   chr16   18138459       19611137  NM_001160364          TMC7
9   chr16   18138459       19611137  NM_001190983          COQ7
10  chr16   18138459       19611137  NM_001199022        CCP110
11  chr16   18138459       19611137  NM_001256720       CLEC19A
13  chr16   18138459       19611137  NM_001282511        NPIPA8
15  chr16   18138459       19611137  NM_001308157         SYT17
17  chr16   18138459       19611137  NM_001313858       ARL6IP1
18  chr16   18138459       19611137  NM_001324066          GDE1
21  chr16   18138459       19611137     NM_015092          SMG1
26  chr16   18138459       19611137     NM_020314      C16orf62
28  chr16   18138459       19611137     NR_003569       ABCC6P1
29  chr16   18138459       19611137     NR_028028      ITPRIPL2
30  chr16   18138459       19611137     NR_036140     MIR3179-1
31  chr16   18138459       19611137     NR_036142     MIR3180-2
32  chr16   18138459       19611137     NR_036144     MIR3180-3
33  chr16   18138459       19611137     NR_037442     MIR3670-1
34  chr16   18138459       19611137     NR_103772  LOC100288162
35  chr16   18138459       19611137     NR_106971     MIR6511A4
36  chr16   18138459       19611137     NR_107060     MIR6770-2
37  chr16   18138459       19611137     NR_119379  LOC102723385
39  chr19   47775633       47956743  NM_001009813         MEIS3
40  chr19   47775633       47956743  NM_001271749         C5AR2
44  chr19   47775633       47956743     NM_001736         C5AR1
45  chr19   47775633       47956743     NM_014681         DHX34
46  chr19   47775633       47956743     NM_015063        SLC8A2
48  chr19   47775633       47956743     NM_178511        INAFM1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12776801       13170747  NM_001009611       PRAMEF4
1    chr1   12776801       13170747  NM_001010889       PRAMEF6
2    chr1   12776801       13170747  NM_001010890       PRAMEF9
3    chr1   12776801       13170747  NM_001012276       PRAMEF8
4    chr1   12776801       13170747  NM_001013407       PRAMEF5
5    chr1   12776801       13170747  NM_001013631      HNRNPCL1
6    chr1   12776801       13170747  NM_001080830      PRAMEF12
7    chr1   12776801       13170747  NM_001099850      PRAMEF18
8    chr1   12776801       13170747  NM_001100631      PRAMEF22
9    chr1   12776801       13170747  NM_001103170       AADACL3
10   chr1   12776801       13170747  NM_001146181      HNRNPCL3
11   chr1   12776801       13170747  NM_001146344      PRAMEF11
12   chr1   12776801       13170747  NM_001294139       PRAMEF1
13   chr1   12776801       13170747  NM_001302551      HNRNPCL4
14   chr1   12776801       13170747  NM_001306072      PRAMEF26
15   chr1   12776801       13170747  NM_001310134      PRAMEF25
17   chr1   12776801       13170747     NM_023014       PRAMEF2
18   chr1   12776801       13170747     NM_152290      C1orf158
19   chr1   12776801       13170747     NR_111945     PRAMEF36P
20  chr14   21892728       22037302  NM_001163380         RAB2B
21  chr14   21892728       22037302  NM_001170629          CHD8
22  chr14   21892728       22037302  NM_001303523          TOX4
23  chr14   21892728       22037302     NM_019852        METTL3
26  chr14   21892728       22037302     NR_111966         SALL2
28  chr16   21474580       21857976  NM_001077180        METTL9
29  chr16   21474580       21857976  NM_001161683          OTOA
31  chr16   21474580       21857976  NM_001310148        NPIPB4
32  chr16   21474580       21857976     NM_005849         IGSF6
35  chr16   21474580       21857976     NR_002594      SLC7A5P2
36  chr16   21474580       21857976     NR_003370        RRN3P1
37  chr16   21474580       21857976     NR_027155        SMG1P3
38  chr16   21474580       21857976     NR_049833     MIR3680-2
39  chr16   21474580       21857976     NR_110930  LOC101927814,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   71721920       71833599     NR_047699  LINC00348
1   chr14   21930573       22052317  NM_001005465     OR10G3
2   chr14   21930573       22052317  NM_001163380      RAB2B
3   chr14   21930573       22052317  NM_001303523       TOX4
4   chr14   21930573       22052317     NM_019852     METTL3
6   chr14   21930573       22052317     NR_111966      SALL2
8   chr15   59906963       60044696  NM_001320674      BNIP2
10  chr15   59906963       60044696  NM_001320929     GTF2A2
13  chr15   59906963       60044696     NM_004751      GCNT3
14  chr17   70937542       71152868     NM_139177   SLC39A11
15  chr18   61820403       62068581     NR_033881  LOC284294
16  chr18   61820403       62068581     NR_033983  LINC01538
17   chr7  110372615      110516748  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108381129      108506674     NM_006113          VAV3
1    chr1  108381129      108506674     NR_107006       MIR7852
2   chr22   17214695       17630684  NM_001037814          GAB4
3   chr22   17214695       17630684  NM_001163079         CECR6
4   chr22   17214695       17630684  NM_001289905        IL17RA
5   chr22   17214695       17630684     NM_017829         CECR5
8   chr22   17214695       17630684     NM_175878          XKR3
9   chr22   17214695       17630684     NR_003607       HSFY1P1
10  chr22   17214695       17630684     NR_015352         CECR7
11  chr22   17214695       17630684     NR_103793  LOC100996342
12  chr22   17214695       17630684     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   64922777       65209754  NM_001004326      SLC22A20
1   chr11   64922777       65209754  NM_001008778         SPDYC
2   chr11   64922777       65209754  NM_001198868         CAPN1
4   chr11   64922777       65209754  NM_001278250      SLC25A45
6   chr11   64922777       65209754  NM_001330308          DPF2
7   chr11   64922777       65209754     NM_002689         POLA2
9   chr11   64922777       65209754     NM_006779      CDC42EP2
10  chr11   64922777       65209754     NM_031904         FRMD8
11  chr11   64922777       65209754     NM_145719         TIGD3
13  chr11   64922777       65209754     NR_028272         NEAT1
17  chr14   21768692       21903047  NM_001170629          CHD8
18  chr14   21768692       21903047     NM_007192       SUPT16H
19  chr14   21768692       21903047     NM_020366       RPGRIP1
21  chr14   21768692       21903047     NR_002916        SNORD8
22  chr14   21768692       21903047     NR_003029        SNORD9
23   chr9  116752817      118284950     NM_000607          ORM1
24   chr9  116752817      118284950     NM_000608          ORM2
25   chr9  116752817      118284950  NM_001083885          WHRN
26   chr9  116752817      118284950  NM_001199233  LOC100505478
27   chr9  116752817      118284950  NM_001204344       TNFSF15
28   chr9  116752817      118284950     NM_001244        TNFSF8
30   chr9  116752817      118284950  NM_001317950          AKNA
32   chr9  116752817      118284950  NM_001318041        ZNF618
33   chr9  116752817      118284950  NM_001330760       TMEM268
34   chr9  116752817      118284950     NM_001633          AMBP
35   chr9  116752817      118284950     NM_002160           TNC
36   chr9  116752817      118284950     NM_004888      ATP6V1G1
39   chr9  116752817      118284950     NM_017418          DEC1
40   chr9  116752817      118284950     NM_032888       COL27A1
41   chr9  116752817      118284950     NM_138424         KIF12
43   chr9  116752817      118284950     NR_030255        MIR455
44   chr9  116752817      118284950     NR_110950  LOC101928748,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   71470314       71653212     NM_004616        TSPAN8
1    chr2   24956442       25079913  NM_001013663        PTRHD1
2    chr2   24956442       25079913  NM_001320613         ADCY3
3    chr2   24956442       25079913  NM_001322101         CENPO
4    chr2   24956442       25079913     NM_003743         NCOA1
5   chr21   13424941       14631021     NR_026916    ANKRD30BP2
6   chr22   17227243       17492792  NM_001037814          GAB4
7   chr22   17227243       17492792     NM_175878          XKR3
8   chr22   17227243       17492792     NR_003607       HSFY1P1
9   chr22   17227243       17492792     NR_134584  LOC101929350
10   chr4  169248540      169411990  NM_001012967        DDX60L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102410178      102535253     NR_110211         OLFM3
1    chr1  143673310      144170001  NM_001123068       PPIAL4G
2    chr1  143673310      144170001  NM_001278267        NBPF20
3    chr1  143673310      144170001  NM_001287385        FAM72C
4    chr1  143673310      144170001  NM_001345942        FAM72D
8    chr1  143673310      144170001     NR_104014     LINC01138
9    chr1  143673310      144170001     NR_111930  LOC100132057
11  chr15   20647193       20915309  NM_001145004      GOLGA6L6
12  chr15   20647193       20915309     NR_027411      GOLGA8CP
13  chr15   20647193       20915309     NR_027992        NBEAP1
14  chr15   20647193       20915309     NR_036432       HERC2P3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  143751180      143918566  NM_001123068   PPIAL4G
1    chr1  143751180      143918566  NM_001287385    FAM72C
2    chr1  143751180      143918566  NM_001345942    FAM72D
7   chr14   21897835       22067873  NM_001005465    OR10G3
8   chr14   21897835       22067873  NM_001163380     RAB2B
9   chr14   21897835       22067873  NM_001170629      CHD8
10  chr14   21897835       22067873  NM_001303523      TOX4
11  chr14   21897835       22067873     NM_019852    METTL3
14  chr14   21897835       22067873     NR_111966     SALL2
16  chr16   83952007       84075904  NM_001080442   SLC38A8
17  chr16   83952007       84075904     NM_019065    NECAB2
18  chr16   83952007       84075904     NM_182981    OSGIN1
19  chr18     631710         860929  NM_001012716    TYMSOS
20  chr18     631710         860929     NM_001071      TYMS
21  chr18     631710         860929  NM_001126123    ENOSF1
22  chr18     631710         860929  NM_001289036     CLUL1
26  chr18     631710         860929     NM_005433      YES1
29   chr2  133122699      133628400  NM_001077427     LYPD1
31   chr2  133122699      133628400     NM_001508     GPR39
32   chr2  133122699      133628400     NM_207363    NCKAP5
33   chr8    6811971        6933112  NM_001302265    DEFA1B
34   chr8    6811971        6933112     NM_004084     DEFA1
36   chr8    6811971        6933112     NM_005217     DEFA3
37   chr8    6811971        6933112     NM_021010     DEFA5
38   chr8    6811971        6933112     NR_029386   DEFA10P
39   chr8    6811971        6933112     NR_036686    DEFT1P
41   chr8    6811971        6933112     NR_073408    DEFA9P
42   chr8    6811971        6933112     NR_073421   DEFA11P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21772913       21946978  NM_001163380         RAB2B
1   chr14   21772913       21946978  NM_001170629          CHD8
2   chr14   21772913       21946978  NM_001303523          TOX4
3   chr14   21772913       21946978     NM_007192       SUPT16H
4   chr14   21772913       21946978     NM_020366       RPGRIP1
7   chr14   21772913       21946978     NR_002916        SNORD8
8   chr14   21772913       21946978     NR_003029        SNORD9
9   chr18   63250569       63578511  NM_001317214          CDH7
12   chr2   97132529       97823142  NM_001115016        KANSL3
13   chr2   97132529       97823142  NM_001122646       FAM178B
14   chr2   97132529       97823142  NM_001164315       ANKRD36
16   chr2   97132529       97823142  NM_001285485        NEURL3
17   chr2   97132529       97823142  NM_001293083        FER1L5
18   chr2   97132529       97823142  NM_001319085        ARID5A
20   chr2   97132529       97823142  NM_001320849        FAHD2B
21   chr2   97132529       97823142  NM_001322354        LMAN2L
22   chr2   97132529       97823142     NM_016466       ANKRD39
24   chr2   97132529       97823142     NM_017623         CNNM3
25   chr2   97132529       97823142     NM_017789        SEMA4C
26   chr2   97132529       97823142     NM_020184         CNNM4
28   chr2   97132529       97823142     NM_144994       ANKRD23
30   chr2   97132529       97823142     NR_036074       MIR3127
33   chr2   97132529       97823142     NR_110209  LOC101927053
34   chr2   97132529       97823142     NR_135564  LOC105373496
35   chr9   30365859       30483975     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68048972       68264860  NM_001127384        CTNNA3
2   chr10   81482828       81683568     NR_002724         MBL1P
3   chr10   81482828       81683568     NR_029407     LOC642361
4   chr10   81482828       81683568     NR_033857       BMS1P21
5   chr10   81482828       81683568     NR_120611    NUTM2B-AS1
8   chr20   14624934       14760971     NM_080676       MACROD2
9   chr20   14824061       14993607     NM_080676       MACROD2
10  chr20   14824061       14993607     NR_037841   MACROD2-AS1
12   chr6   95630649       96171694     NM_024641         MANEA
13   chr6   95630649       96171694     NR_047502     MANEA-AS1
15   chr7  157297177      157892856  NM_001308267        PTPRN2
17   chr7  157297177      157892856     NR_029689      MIR153-2
18   chr7  157297177      157892856     NR_038966  LOC100506585,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   91883690       92068040  NM_001134419      CDC7
2   chr11    4789950        5361244     NM_000184      HBG2
3   chr11    4789950        5361244     NM_000518       HBB
4   chr11    4789950        5361244     NM_000519       HBD
5   chr11    4789950        5361244     NM_000559      HBG1
6   chr11    4789950        5361244  NM_001001916    OR52J3
7   chr11    4789950        5361244  NM_001004748    OR51A2
8   chr11    4789950        5361244  NM_001004749    OR51A7
9   chr11    4789950        5361244  NM_001004752    OR51F1
10  chr11    4789950        5361244  NM_001004753    OR51F2
11  chr11    4789950        5361244  NM_001004755    OR51L1
12  chr11    4789950        5361244  NM_001004758    OR51S1
13  chr11    4789950        5361244  NM_001004759    OR51T1
14  chr11    4789950        5361244  NM_001004760    OR51V1
15  chr11    4789950        5361244  NM_001005160    OR52A5
16  chr11    4789950        5361244  NM_001005164    OR52E2
17  chr11    4789950        5361244  NM_001005177    OR52R1
18  chr11    4789950        5361244  NM_001005237    OR51G1
19  chr11    4789950        5361244  NM_001005238    OR51G2
20  chr11    4789950        5361244  NM_001005329    OR51A4
21  chr11    4789950        5361244     NM_005330      HBE1
22  chr11    4789950        5361244     NM_012375    OR52A1
23  chr11    4789950        5361244     NM_021801     MMP26
24  chr11    4789950        5361244     NM_033179    OR51B4
25  chr11    4789950        5361244     NM_033180    OR51B2
26  chr11    4789950        5361244     NR_001589     HBBP1
27  chr11    4789950        5361244     NR_121648     BGLT3
28  chr14   21932671       22051481  NM_001005465    OR10G3
29  chr14   21932671       22051481  NM_001163380     RAB2B
30  chr14   21932671       22051481  NM_001303523      TOX4
31  chr14   21932671       22051481     NM_019852    METTL3
33  chr14   21932671       22051481     NR_111966     SALL2
35  chr22   19911679       20168140     NM_000754      COMT
38  chr22   19911679       20168140  NM_001190326     DGCR8
39  chr22   19911679       20168140  NM_001243537   CCDC188
40  chr22   19911679       20168140  NM_001278639    RANBP1
43  chr22   19911679       20168140  NM_001282512    TXNRD2
44  chr22   19911679       20168140  NM_001283116    TANGO2
47  chr22   19911679       20168140     NM_001670     ARVCF
50  chr22   19911679       20168140     NM_013373    ZDHHC8
51  chr22   19911679       20168140     NM_022727    TRMT2A
52  chr22   19911679       20168140     NR_029706    MIR185
53  chr22   19911679       20168140     NR_031706   MIR1306
54  chr22   19911679       20168140     NR_037412   MIR3618
55  chr22   19911679       20168140     NR_039918   MIR4761
56  chr22   19911679       20168140     NR_106874   MIR6816
57   chr3  131205219      131423625  NM_001289112     CPNE4
58   chr3  131205219      131423625     NM_007208     MRPL3
61   chr7   75793504       75907154  NM_001110199     SRRM3
62   chr7   75885901       75996860  NM_001110199     SRRM3
63   chr7   75885901       75996860     NM_001540     HSPB1
64   chr7   75885901       75996860     NM_012479     YWHAG
65   chr8    8189719        8369129  NM_001080826     PRAG1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21873684       22034215  NM_001163380      RAB2B
1   chr14   21873684       22034215  NM_001170629       CHD8
2   chr14   21873684       22034215  NM_001303523       TOX4
3   chr14   21873684       22034215     NM_019852     METTL3
6   chr14   21873684       22034215     NR_111966      SALL2
8   chr15   36157169       36417510     NR_039735    MIR4510
9    chr2   52281950       52416098     NR_135237  LOC730100
10   chr7  110629217      110759650  NM_001099658      LRRN3
11   chr7  110629217      110759650  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143688854      143806165  NM_001123068       PPIAL4G
1    chr1  143688854      143806165     NR_104014     LINC01138
2    chr1  143688854      143806165     NR_111930  LOC100132057
3    chr1  245001092      245235996  NM_001143943        EFCAB2
5    chr1  245001092      245235996  NM_001312871         COX20
7    chr1  245001092      245235996     NM_004501        HNRNPU
10   chr1  245001092      245235996     NR_111907  LOC101928068
11   chr1  245001092      245235996     NR_132782      SNORA100
12  chr14   21641976       21855886  NM_001170629          CHD8
13  chr14   21641976       21855886     NM_007192       SUPT16H
14  chr14   21641976       21855886     NM_020366       RPGRIP1
16  chr14   21641976       21855886     NM_031314        HNRNPC
17  chr14   21641976       21855886     NR_038970     LINC00641
19  chr21   22307457       22464092     NM_004540         NCAM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67618483       69144182  NM_001127384        CTNNA3
3   chr10   67618483       69144182     NM_178011        LRRTM3
5   chr10   67618483       69144182     NR_111911  LOC101928961
6   chr14   21659377       21788056     NM_020366       RPGRIP1
7   chr14   21659377       21788056     NM_031314        HNRNPC
8   chr14   21659377       21788056     NR_038970     LINC00641
10  chr15   28305370       28500668     NM_000275          OCA2
12  chr15   28305370       28500668     NM_004667         HERC2
13   chr5   23789001       24077910     NR_131245       C5orf17
14   chr8  138095910      138526802     NR_125428  LOC101927915,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr13   41353157       41463255     NM_014252           SLC25A15
1   chr13   41353157       41463255     NR_030352             MIR621
2   chr13   41353157       41463255     NR_038259            TPTE2P5
3   chr16   68552149       68720128  NM_001305204              ZFP90
5   chr16   68552149       68720128  NM_001317195               CDH3
6   chr17   63541007       63676952  NM_001037325             CEP112
9   chr17   63541007       63676952     NM_004655              AXIN2
10  chr22   15721534       17600450  NM_001005239             OR11H1
11  chr22   15721534       17600450  NM_001037814               GAB4
12  chr22   15721534       17600450  NM_001136213              POTEH
13  chr22   15721534       17600450  NM_001163079              CECR6
14  chr22   15721534       17600450  NM_001289905             IL17RA
15  chr22   15721534       17600450     NM_014406             CCT8L2
17  chr22   15721534       17600450     NM_175878               XKR3
18  chr22   15721534       17600450     NR_001591             TPTEP1
19  chr22   15721534       17600450     NR_003607            HSFY1P1
20  chr22   15721534       17600450     NR_015352              CECR7
21  chr22   15721534       17600450     NR_040115  ANKRD62P1-PARP4P3
22  chr22   15721534       17600450     NR_046571          POTEH-AS1
23  chr22   15721534       17600450     NR_073459            BMS1P18
24  chr22   15721534       17600450     NR_122113             DUXAP8
25  chr22   15721534       17600450     NR_132385          LINC01297
26  chr22   15721534       17600450     NR_133911            BMS1P22
27  chr22   15721534       17600450     NR_134584       LOC101929350
28   chr5   99632737      100480681     NM_005668            ST8SIA4
30   chr5   99632737      100480681     NM_198507            FAM174A
31   chr5   99632737      100480681     NR_027503       LOC100133050
32   chr5   99632737      100480681     NR_031686            MIR548P
33   chr9   26333891       26927335  NM_001031689               PLAA
34   chr9   26333891       26927335  NM_001167575              CAAP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21939735       22517636  NM_001001912         OR4E2
1   chr14   21939735       22517636  NM_001005465        OR10G3
2   chr14   21939735       22517636  NM_001005466        OR10G2
3   chr14   21939735       22517636  NM_001163380         RAB2B
4   chr14   21939735       22517636  NM_001303523          TOX4
5   chr14   21939735       22517636  NM_001317107         OR4E1
6   chr14   21939735       22517636     NM_019852        METTL3
8   chr14   21939735       22517636     NR_111966         SALL2
10  chr17   47898969       48009510  NM_001077503          TAC4
11  chr17   47898969       48009510  NM_001199158          KAT7
12  chr17   47898969       48009510  NM_001242791      FLJ45513
13  chr22   17215131       17481793  NM_001037814          GAB4
14  chr22   17215131       17481793     NM_175878          XKR3
15  chr22   17215131       17481793     NR_003607       HSFY1P1
16  chr22   17215131       17481793     NR_134584  LOC101929350
17   chr4   69139523       69262450  NM_001031732        YTHDC1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  242664421      242914748     NM_152666       PLD5
1   chr14   21785747       21913638  NM_001170629       CHD8
2   chr14   21785747       21913638     NM_007192    SUPT16H
3   chr14   21785747       21913638     NM_020366    RPGRIP1
5   chr14   21785747       21913638     NR_002916     SNORD8
6   chr14   21785747       21913638     NR_003029     SNORD9
7   chr16   18315002       18417712  NM_001282511     NPIPA8
8   chr16   29515116       29637611     NR_049833  MIR3680-2
9   chr16   29515116       29637611     NR_135305     SMG1P2
11  chr19   33129844       33908870     NM_000285       PEPD
12  chr19   33129844       33908870  NM_001105570     NUDT19
13  chr19   33129844       33908870  NM_001110822     TDRD12
14  chr19   33129844       33908870  NM_001252296      CEBPG
15  chr19   33129844       33908870  NM_001285829      CEBPA
16  chr19   33129844       33908870  NM_001300978     FAAP24
18  chr19   33129844       33908870     NM_002333       LRP3
19  chr19   33129844       33908870     NM_014270     SLC7A9
20  chr19   33129844       33908870     NM_019849    SLC7A10
21  chr19   33129844       33908870     NM_032139    ANKRD27
22  chr19   33129844       33908870     NM_032816      CEP89
23  chr19   33129844       33908870     NM_033103      RHPN2
24  chr19   33129844       33908870     NM_173479      WDR88
25  chr19   33129844       33908870     NM_207391     RGS9BP
26  chr19   33129844       33908870     NR_026887  CEBPA-AS1
27  chr19   33129844       33908870     NR_135270    GPATCH1
28   chr7    3398273        3695620     NM_152744       SDK1
29   chr7  152313926      152432235     NM_005431      XRCC2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21937509       22559028  NM_001001912         OR4E2
1   chr14   21937509       22559028  NM_001005465        OR10G3
2   chr14   21937509       22559028  NM_001005466        OR10G2
3   chr14   21937509       22559028  NM_001163380         RAB2B
4   chr14   21937509       22559028  NM_001303523          TOX4
5   chr14   21937509       22559028  NM_001317107         OR4E1
6   chr14   21937509       22559028     NM_019852        METTL3
8   chr14   21937509       22559028     NR_111966         SALL2
10  chr14   21862645       22051633  NM_001005465        OR10G3
11  chr14   21862645       22051633  NM_001163380         RAB2B
12  chr14   21862645       22051633  NM_001170629          CHD8
13  chr14   21862645       22051633  NM_001303523          TOX4
14  chr14   21862645       22051633     NM_019852        METTL3
17  chr14   21862645       22051633     NR_002916        SNORD8
18  chr14   21862645       22051633     NR_111966         SALL2
20   chr2     920814        1346694     NM_018968         SNTG2
21   chr2     920814        1346694     NR_136151  LOC101060391
22   chr7  110570210      112173128  NM_001099658         LRRN3
23   chr7  110570210      112173128  NM_001134468        LSMEM1
24   chr7  110570210      112173128  NM_001197079         IFRD1
26   chr7  110570210      112173128  NM_001244606        IMMP2L
28   chr7  110570210      112173128     NM_014705         DOCK4
29   chr7  110570210      112173128     NM_021994        ZNF277
32   chr7  110570210      112173128     NR_103806     DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   21836724       22098477  NM_001005465         OR10G3
1   chr14   21836724       22098477  NM_001163380          RAB2B
2   chr14   21836724       22098477  NM_001170629           CHD8
3   chr14   21836724       22098477  NM_001303523           TOX4
4   chr14   21836724       22098477     NM_007192        SUPT16H
5   chr14   21836724       22098477     NM_019852         METTL3
8   chr14   21836724       22098477     NR_002916         SNORD8
9   chr14   21836724       22098477     NR_003029         SNORD9
10  chr14   21836724       22098477     NR_111966          SALL2
12  chr16   15132368       15484483  NM_001270767          NTAN1
13  chr16   15132368       15484483  NM_001277325         NPIPA5
14  chr16   15132368       15484483  NM_001285449         PDXDC1
15  chr16   15132368       15484483  NM_001301064           RRN3
17  chr16   15132368       15484483     NR_037466      MIR3180-4
18  chr16   15132368       15484483     NR_106775      MIR6511B1
19  chr16   15132368       15484483     NR_106965      MIR6511B2
20  chr16   15132368       15484483     NR_123721  PKD1P6-NPIPP1
22  chr16   15132368       15484483     NR_125434   LOC100505915
23   chr9   11964508       13340905     NM_000550          TYRP1
24   chr9   11964508       13340905  NM_001261407           MPDZ
26   chr9   11964508       13340905     NM_203403        LURAP1L
27   chr9   11964508       13340905     NR_125775    LURAP1L-AS1
28   chr9   11964508       13340905     NR_132976       SNORD137,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143613140      144930939  NM_001002811       PDE4DIP
2    chr1  143613140      144930939  NM_001123068       PPIAL4G
3    chr1  143613140      144930939  NM_001135789       PPIAL4C
6    chr1  143613140      144930939  NM_001277444         NBPF9
7    chr1  143613140      144930939  NM_001278267        NBPF20
8    chr1  143613140      144930939  NM_001287385        FAM72C
9    chr1  143613140      144930939  NM_001345942        FAM72D
13   chr1  143613140      144930939     NR_003242        PFN1P2
14   chr1  143613140      144930939     NR_024511     LINC00623
16   chr1  143613140      144930939     NR_102405         NBPF8
17   chr1  143613140      144930939     NR_104014     LINC01138
18   chr1  143613140      144930939     NR_106967       MIR6077
19   chr1  143613140      144930939     NR_111930  LOC100132057
20   chr1  143613140      144930939     NR_111953     LINC00869
22   chr1  245039062      245271563  NM_001143943        EFCAB2
25   chr1  245039062      245271563     NR_111907  LOC101928068
26  chr12   57709778       57932434  NM_001080156       ARHGAP9
28  chr12   57709778       57932434  NM_001160045          GLI1
30  chr12   57709778       57932434  NM_001261412         DCTN2
32  chr12   57709778       57932434  NM_001330122        R3HDM2
33  chr12   57709778       57932434     NM_004083         DDIT3
34  chr12   57709778       57932434     NM_004990          MARS
35  chr12   57709778       57932434     NM_005538         INHBC
37  chr12   57709778       57932434     NM_031479         INHBE
39  chr12   57709778       57932434     NM_052897          MBD6
40  chr12   57709778       57932434     NR_030346        MIR616
41  chr12   57709778       57932434     NR_106816       MIR6758
42  chr13   63157848       63486391     NR_047029     LINC00448
45  chr20   14717475       14847104     NM_080676       MACROD2
46   chr7   75850380       76056532  NM_001110199         SRRM3
47   chr7   75850380       76056532  NM_001110354           ZP3
48   chr7   75850380       76056532     NM_001540         HSPB1
50   chr7   75850380       76056532     NM_012479         YWHAG
51   chr7   75850380       76056532     NM_080744         SSC4D,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0    chr1   12847146       13583903  NM_001009611     PRAMEF4
1    chr1   12847146       13583903  NM_001010889     PRAMEF6
3    chr1   12847146       13583903  NM_001010890     PRAMEF9
4    chr1   12847146       13583903  NM_001012276     PRAMEF8
6    chr1   12847146       13583903  NM_001013407     PRAMEF5
8    chr1   12847146       13583903  NM_001013631    HNRNPCL1
9    chr1   12847146       13583903  NM_001024661    PRAMEF14
10   chr1   12847146       13583903  NM_001039361    PRAMEF10
11   chr1   12847146       13583903  NM_001098376    PRAMEF15
12   chr1   12847146       13583903  NM_001099790    PRAMEF19
13   chr1   12847146       13583903  NM_001099850    PRAMEF18
15   chr1   12847146       13583903  NM_001099851    PRAMEF17
16   chr1   12847146       13583903  NM_001099852    PRAMEF20
17   chr1   12847146       13583903  NM_001100631    PRAMEF22
19   chr1   12847146       13583903  NM_001136561    HNRNPCL2
20   chr1   12847146       13583903  NM_001146181    HNRNPCL3
21   chr1   12847146       13583903  NM_001146344    PRAMEF11
22   chr1   12847146       13583903  NM_001291381   PRAMEF33P
23   chr1   12847146       13583903  NM_001294139     PRAMEF1
24   chr1   12847146       13583903  NM_001300891    PRAMEF27
26   chr1   12847146       13583903  NM_001302551    HNRNPCL4
27   chr1   12847146       13583903  NM_001306072    PRAMEF26
28   chr1   12847146       13583903  NM_001310134    PRAMEF25
30   chr1   12847146       13583903     NM_023014     PRAMEF2
31   chr1   12847146       13583903     NR_111945   PRAMEF36P
33   chr1  102392778      102497407     NR_110211       OLFM3
34  chr13   63299888       63796579     NR_047029   LINC00448
37  chr13   63299888       63796579     NR_126409   LINC00376
38  chr14   21791803       22131693  NM_001005465      OR10G3
39  chr14   21791803       22131693  NM_001005466      OR10G2
40  chr14   21791803       22131693  NM_001163380       RAB2B
41  chr14   21791803       22131693  NM_001170629        CHD8
42  chr14   21791803       22131693  NM_001303523        TOX4
43  chr14   21791803       22131693     NM_007192     SUPT16H
44  chr14   21791803       22131693     NM_019852      METTL3
45  chr14   21791803       22131693     NM_020366     RPGRIP1
48  chr14   21791803       22131693     NR_002916      SNORD8
49  chr14   21791803       22131693     NR_003029      SNORD9
50  chr14   21791803       22131693     NR_111966       SALL2
52   chr8    7825084        7977440  NM_001256871     USP17L3
53   chr8    7825084        7977440  NM_001256872     USP17L8
54   chr8    7825084        7977440     NR_003668  DEFB109P1B
55   chr8    7825084        7977440     NR_027424      FAM66E
56   chr8    7825084        7977440     NR_031689    MIR548I3
57   chr9   39095492       39265562     NM_033655     CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  143731872      144471993  NM_001123068    PPIAL4G
1    chr1  143731872      144471993  NM_001135789    PPIAL4C
2    chr1  143731872      144471993  NM_001278267     NBPF20
3    chr1  143731872      144471993  NM_001287385     FAM72C
4    chr1  143731872      144471993  NM_001345942     FAM72D
8    chr1  143731872      144471993     NR_024511  LINC00623
10   chr1  143731872      144471993     NR_104014  LINC01138
11   chr1  143731872      144471993     NR_111953  LINC00869
13  chr10   67961373       68066462  NM_001127384     CTNNA3
15   chr2  110152931      110260793  NM_001099289     SH3RF3
16   chr4   91153543       91316149  NM_001145065     CCSER1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   41365490       41713411  NM_001145353          ELF1
1   chr13   41365490       41713411     NM_007187          WBP4
2   chr13   41365490       41713411     NM_014252      SLC25A15
3   chr13   41365490       41713411     NM_152903        KBTBD6
5   chr13   41365490       41713411     NR_003365       SUGT1P3
6   chr13   41365490       41713411     NR_030352        MIR621
7   chr13   41365490       41713411     NR_036127       MIR3168
8   chr13   41365490       41713411     NR_038259       TPTE2P5
9   chr13   41365490       41713411     NR_120423  LOC101929140
10  chr16   16402609       17101319  NM_001282511        NPIPA8
11  chr16   16402609       17101319     NR_036141     MIR3180-1
12  chr16   16402609       17101319     NR_036142     MIR3180-2
13  chr16   16402609       17101319     NR_036447        PKD1P1
14  chr16   16402609       17101319     NR_103772  LOC100288162
15  chr16   16402609       17101319     NR_106766     MIR6511A1
16  chr16   16402609       17101319     NR_106971     MIR6511A4
17  chr16   16402609       17101319     NR_107060     MIR6770-2
18  chr20    5165317        5621526     NM_003818          CDS2
19  chr20    5165317        5621526     NM_019593        GPCPD1
20  chr20    5165317        5621526     NM_144773        PROKR2
21  chr20    5165317        5621526     NR_015406     LINC00654
22  chr20    5165317        5621526     NR_029405     LOC643406
23  chr20    5165317        5621526     NR_038240     LINC00658
24  chr20    5165317        5621526     NR_109860  LOC101929207
25   chr6  162785078      162940549     NM_013988         PARK2
26   chr9     213357         806801  NM_001190458         DOCK8
27   chr9     213357         806801  NM_001256876         KANK1
29   chr9     213357         806801     NM_152569       C9orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21933105       22093416  NM_001005465        OR10G3
1   chr14   21933105       22093416  NM_001163380         RAB2B
2   chr14   21933105       22093416  NM_001303523          TOX4
3   chr14   21933105       22093416     NM_019852        METTL3
5   chr14   21933105       22093416     NR_111966         SALL2
7   chr16    6675433        6985281  NM_001142334        RBFOX1
10   chr2  242492764      242598366  NM_001164356         THAP4
12   chr2  242492764      242598366     NM_032515           BOK
13   chr2  242492764      242598366     NM_178326         ATG4B
14   chr2  242492764      242598366     NR_033346       BOK-AS1
15   chr3  105314377      105480753  NM_001321786          CBLB
21   chr4  130534573      130745220     NR_110753  LOC101927282,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187183770      190617937  NM_001317188        BRINP3
2    chr1  187183770      190617937     NR_033922     LOC440704
3    chr1  187183770      190617937     NR_110716     LINC01351
5    chr1  187183770      190617937     NR_126347     LINC01036
6    chr1  187183770      190617937     NR_132374     LINC01037
7   chr16   18390790       18795582  NM_001004060         NOMO2
8   chr16   18390790       18795582     NM_001019        RPS15A
9   chr16   18390790       18795582  NM_001282511        NPIPA8
10  chr16   18390790       18795582     NR_003569       ABCC6P1
11  chr16   18390790       18795582     NR_036140     MIR3179-1
12  chr16   18390790       18795582     NR_036142     MIR3180-2
13  chr16   18390790       18795582     NR_036144     MIR3180-3
14  chr16   18390790       18795582     NR_037442     MIR3670-1
15  chr16   18390790       18795582     NR_103772  LOC100288162
16  chr16   18390790       18795582     NR_106971     MIR6511A4
17  chr16   18390790       18795582     NR_107060     MIR6770-2
18   chr7   84721026       84902467     NM_152754        SEMA3D
19   chr7  110522870      111507257  NM_001099658         LRRN3
20   chr7  110522870      111507257  NM_001244606        IMMP2L
21   chr7  110522870      111507257     NM_014705         DOCK4
23   chr7  110522870      111507257     NR_103806     DOCK4-AS1
24   chr9  101898060      101998789     NM_004612        TGFBR1
25   chr9  101898060      101998789     NM_006808        SEC61B
26   chr9  101898060      101998789     NM_033087          ALG2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   41849528       42180168  NM_001346175         LRFN5
1    chr2  109854082      109955454  NM_001099289        SH3RF3
2    chr2  109854082      109955454     NR_036224       MIR4266
3    chr2  186512926      186705304     NM_173651         FSIP2
4    chr2  186512926      186705304     NR_110214  LOC101927196
7    chr2  186512926      186705304     NR_144453     FSIP2-AS1
9    chr7   71509452       71665841  NM_001017440         CALN1
11   chr9   28174168       28316146  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12785992       12887067  NM_001080830      PRAMEF12
1    chr1   12785992       12887067  NM_001103170       AADACL3
2    chr1   12785992       12887067  NM_001146344      PRAMEF11
3    chr1   12785992       12887067  NM_001294139       PRAMEF1
5    chr1   12785992       12887067     NM_152290      C1orf158
6    chr1  143622910      143855328  NM_001123068       PPIAL4G
7    chr1  143622910      143855328     NR_104014     LINC01138
8    chr1  143622910      143855328     NR_106967       MIR6077
9    chr1  143622910      143855328     NR_111930  LOC100132057
10  chr14   21833754       22236100  NM_001001912         OR4E2
11  chr14   21833754       22236100  NM_001005465        OR10G3
12  chr14   21833754       22236100  NM_001005466        OR10G2
13  chr14   21833754       22236100  NM_001163380         RAB2B
14  chr14   21833754       22236100  NM_001170629          CHD8
15  chr14   21833754       22236100  NM_001303523          TOX4
16  chr14   21833754       22236100  NM_001317107         OR4E1
17  chr14   21833754       22236100     NM_007192       SUPT16H
18  chr14   21833754       22236100     NM_019852        METTL3
21  chr14   21833754       22236100     NR_002916        SNORD8
22  chr14   21833754       22236100     NR_003029        SNORD9
23  chr14   21833754       22236100     NR_111966         SALL2
25   chr2  110112854      110241413  NM_001099289        SH3RF3
26   chr3   50276158       50389610  NM_001166425         GNAI2
27   chr3   50276158       50389610  NM_001200016          NAT6
29   chr3   50276158       50389610  NM_001200029         HYAL3
30   chr3   50276158       50389610  NM_001206957        RASSF1
34   chr3   50276158       50389610  NM_001290060        SEMA3B
37   chr3   50276158       50389610  NM_001291284      CYB561D2
38   chr3   50276158       50389610  NM_001308379       ZMYND10
40   chr3   50276158       50389610     NM_003773         HYAL2
42   chr3   50276158       50389610     NM_006545         NPRL2
43   chr3   50276158       50389610     NM_006764         IFRD2
44   chr3   50276158       50389610     NM_007275         TUSC2
45   chr3   50276158       50389610     NM_153215        LSMEM2
46   chr3   50276158       50389610     NM_153281         HYAL1
50   chr3   50276158       50389610     NR_106932       MIR6872
51   chr3   50276158       50389610     NR_109831    RASSF1-AS1
52   chr3   50276158       50389610     NR_110702    SEMA3B-AS1
54   chr9    6557099        6752372     NM_000170          GLDC
55   chr9    6557099        6752372  NM_001146696         KDM4C,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143698014      144477040  NM_001123068       PPIAL4G
1    chr1  143698014      144477040  NM_001135789       PPIAL4C
2    chr1  143698014      144477040  NM_001278267        NBPF20
3    chr1  143698014      144477040  NM_001287385        FAM72C
4    chr1  143698014      144477040  NM_001345942        FAM72D
8    chr1  143698014      144477040     NR_024511     LINC00623
10   chr1  143698014      144477040     NR_104014     LINC01138
11   chr1  143698014      144477040     NR_111930  LOC100132057
12   chr1  143698014      144477040     NR_111953     LINC00869
14  chr10   26051905       26673424     NM_000818          GAD2
16  chr10   26051905       26673424     NM_017433         MYO3A
17  chr10   26051905       26673424     NR_120650  LOC101929073
18  chr10   27599244       27755838  NM_001034842        PTCHD3
19  chr10   27599244       27755838     NR_138082       ARMC4P1
20   chr2   51099739       51386716  NM_001330079         NRXN1
23   chr2   51099739       51386716     NR_135237     LOC730100
24   chr2  110154774      110327943  NM_001099289        SH3RF3
25   chr2  110154774      110327943  NM_001321504        SEPT10
27   chr5   16893244       17118147     NM_012334         MYO10
28   chr9   39011437       39130523     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   49077734       49631630  NM_001302082      BEND5
1    chr1   49077734       49631630  NM_001323575      AGBL4
2   chr14   21853153       21999055  NM_001163380      RAB2B
3   chr14   21853153       21999055  NM_001170629       CHD8
4   chr14   21853153       21999055  NM_001303523       TOX4
5   chr14   21853153       21999055     NM_019852     METTL3
8   chr14   21853153       21999055     NR_002916     SNORD8
9   chr14   21853153       21999055     NR_003029     SNORD9
10  chr14   21853153       21999055     NR_111966      SALL2
12  chr16   28674054       28779143  NM_001199142      EIF3C
14  chr16   28674054       28779143  NM_001287251     NPIPB9
15  chr16   28674054       28779143  NM_001317856     EIF3CL
16  chr16   28674054       28779143     NR_107058  MIR6862-2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12804679       12941764  NM_001009611      PRAMEF4
1    chr1   12804679       12941764  NM_001013631     HNRNPCL1
2    chr1   12804679       12941764  NM_001080830     PRAMEF12
3    chr1   12804679       12941764  NM_001146181     HNRNPCL3
4    chr1   12804679       12941764  NM_001146344     PRAMEF11
5    chr1   12804679       12941764  NM_001294139      PRAMEF1
6    chr1   12804679       12941764  NM_001302551     HNRNPCL4
8    chr1   12804679       12941764     NM_023014      PRAMEF2
9    chr1   12804679       12941764     NM_152290     C1orf158
10  chr10   56485974       56807830  NM_001142770       PCDH15
13  chr12   89335959       89487810     NR_038385    LOC728084
14  chr20   14723574       14883286     NM_080676      MACROD2
15  chr20   14723574       14883286     NR_037841  MACROD2-AS1
16   chr5   16920484       17092786     NM_012334        MYO10
17   chr7   71491509       71651445  NM_001017440        CALN1
19   chr7  109561164      110936471  NM_001099658        LRRN3
20   chr7  109561164      110936471  NM_001244606       IMMP2L
22   chr7  109561164      110936471     NR_003024      EIF3IP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   48915504       49040596  NM_001286238        SPATA6
1    chr1   48915504       49040596  NM_001323575         AGBL4
2   chr13   40332596       40461570  NM_001145079          COG6
3   chr14   21851018       21994143  NM_001163380         RAB2B
4   chr14   21851018       21994143  NM_001170629          CHD8
5   chr14   21851018       21994143  NM_001303523          TOX4
6   chr14   21851018       21994143     NM_007192       SUPT16H
7   chr14   21851018       21994143     NM_019852        METTL3
10  chr14   21851018       21994143     NR_002916        SNORD8
11  chr14   21851018       21994143     NR_003029        SNORD9
12  chr14   21851018       21994143     NR_111966         SALL2
14  chr14   42084461       42190365  NM_001346175         LRFN5
15  chr16    6698057        6869479  NM_001142334        RBFOX1
18   chr2   51065014       51268962  NM_001330079         NRXN1
21   chr2   51065014       51268962     NR_135237     LOC730100
22   chr7      89940         231944     NM_020223        FAM20C
23   chr7      89940         231944     NR_108065  LOC100507642
24   chr7      89940         231944     NR_134324  LOC105375115
25   chr7      89940         231944     NR_134325  LOC102723672
26   chr7   24253463       24378803     NM_000905           NPY,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   54190269       54316856     NR_120641    LINC01468
2   chr10   67659952       67851076  NM_001127384       CTNNA3
4   chr14   75121169       75344738  NM_001039479        AREL1
5   chr14   75121169       75344738  NM_001080408        PROX2
6   chr14   75121169       75344738  NM_001318508         FCF1
8   chr14   75121169       75344738     NM_019589        YLPM1
9   chr16   21690546       21796922  NM_001161683         OTOA
12  chr20   14808465       14999589     NM_080676      MACROD2
13  chr20   14808465       14999589     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   37955689       38219959  NM_001195296        MIPOL1
1   chr14   37955689       38219959  NM_001310135          TTC6
2   chr14   37955689       38219959     NM_004496         FOXA1
3   chr14   47824132       47946339  NM_001113498         MDGA2
4   chr22   17187456       17496845  NM_001037814          GAB4
5   chr22   17187456       17496845     NM_175878          XKR3
6   chr22   17187456       17496845     NR_003607       HSFY1P1
7   chr22   17187456       17496845     NR_134584  LOC101929350
8    chr4   94121457       94337911     NM_001510         GRID2
9    chr9   39050533       39150994     NM_033655       CNTNAP3
10   chr9   41925384       42097686     NR_003670        FGF7P3
11   chr9   41925384       42097686     NR_015363         GLIDR
14   chr9   41925384       42097686     NR_126048  LOC102724238
15   chr9   41925384       42097686     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142507706      144101768  NM_001123068       PPIAL4G
1    chr1  142507706      144101768  NM_001287385        FAM72C
2    chr1  142507706      144101768  NM_001345942        FAM72D
6    chr1  142507706      144101768     NR_046228   ANKRD20A12P
7    chr1  142507706      144101768     NR_104014     LINC01138
8    chr1  142507706      144101768     NR_106967       MIR6077
9    chr1  142507706      144101768     NR_110761  LOC102723769
10   chr1  142507706      144101768     NR_111930  LOC100132057
12  chr11   48352064       49006667  NM_001005512        OR4A47
13  chr11   48352064       49006667  NM_001005513        OR4C45
14  chr11   55825848       56295525  NM_001002907         OR8K1
15  chr11   55825848       56295525  NM_001003750         OR8I2
16  chr11   55825848       56295525  NM_001004058         OR8K5
17  chr11   55825848       56295525  NM_001004064         OR8J3
18  chr11   55825848       56295525  NM_001004742         OR5M3
19  chr11   55825848       56295525  NM_001004743         OR5M9
20  chr11   55825848       56295525  NM_001004744         OR5R1
21  chr11   55825848       56295525  NM_001004745         OR5T1
22  chr11   55825848       56295525  NM_001004746         OR5T2
23  chr11   55825848       56295525  NM_001004747         OR5T3
24  chr11   55825848       56295525  NM_001005199         OR8H1
25  chr11   55825848       56295525  NM_001005200         OR8H2
26  chr11   55825848       56295525  NM_001005201         OR8H3
27  chr11   55825848       56295525  NM_001005202         OR8K3
28  chr11   55825848       56295525  NM_001005204         OR8U1
29  chr11   55825848       56295525  NM_001005205         OR8J1
30  chr11   55825848       56295525  NM_001005282         OR5M8
31  chr11   55825848       56295525  NM_001005492         OR5J2
32  chr11   55825848       56295525  NM_001013356         OR8U8
33   chr3  197173176      197365079     NM_203314          BDH1
35   chr3  197173176      197365079     NR_003266     LOC220729,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17260166       17704460  NM_001037814          GAB4
1   chr22   17260166       17704460  NM_001163079         CECR6
2   chr22   17260166       17704460  NM_001282227         CECR1
4   chr22   17260166       17704460  NM_001289905        IL17RA
5   chr22   17260166       17704460     NM_017829         CECR5
8   chr22   17260166       17704460     NM_175878          XKR3
10  chr22   17260166       17704460     NR_003607       HSFY1P1
11  chr22   17260166       17704460     NR_015352         CECR7
12  chr22   17260166       17704460     NR_024482     CECR5-AS1
13  chr22   17260166       17704460     NR_103793  LOC100996342
14   chr9   41846315       41957977     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63332069       63505647     NR_047029  LINC00448
3   chr14   21782496       22088623  NM_001005465     OR10G3
4   chr14   21782496       22088623  NM_001163380      RAB2B
5   chr14   21782496       22088623  NM_001170629       CHD8
6   chr14   21782496       22088623  NM_001303523       TOX4
7   chr14   21782496       22088623     NM_007192    SUPT16H
8   chr14   21782496       22088623     NM_019852     METTL3
9   chr14   21782496       22088623     NM_020366    RPGRIP1
12  chr14   21782496       22088623     NR_002916     SNORD8
13  chr14   21782496       22088623     NR_003029     SNORD9
14  chr14   21782496       22088623     NR_111966      SALL2
16   chr2   97269452       97413069  NM_001115016     KANSL3
17   chr2   97269452       97413069  NM_001293083     FER1L5
18   chr2   97269452       97413069  NM_001322354     LMAN2L
21   chr7  110603429      111016545  NM_001099658      LRRN3
22   chr7  110603429      111016545  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   25970972       26255515     NM_017433         MYO3A
1   chr10   25970972       26255515     NR_108067     LINC00836
3   chr10   25970972       26255515     NR_120650  LOC101929073
4   chr16   16470454       16599013  NM_001282511        NPIPA8
5    chr2  215494637      215608089     NM_000465         BARD1
6    chr6    5186620        5460342  NM_001164840         LYRM4
8    chr6    5186620        5460342  NM_001318872         FARS2
11   chr6    5186620        5460342     NR_125846  LOC101927972
12   chr6    5186620        5460342     NR_126015     LYRM4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67271748       67388455     NM_000852         GSTP1
1   chr11   67271748       67388455  NM_001166102        NDUFV1
2   chr11   67271748       67388455  NM_001318496         CABP2
3   chr11   67271748       67388455     NM_004910       PITPNM1
4   chr11   67271748       67388455     NM_005851       CDK2AP2
5   chr11   67271748       67388455     NR_033791        DOC2GP
7   chr11   67271748       67388455     NR_130935      C11orf72
8   chr14   21942220       22051211  NM_001005465        OR10G3
9   chr14   21942220       22051211  NM_001163380         RAB2B
10  chr14   21942220       22051211  NM_001303523          TOX4
11  chr14   21942220       22051211     NM_019852        METTL3
13  chr14   21942220       22051211     NR_111966         SALL2
15   chr2   78329170       78517246     NR_110287  LOC101927948
16   chr2   78329170       78517246     NR_110288  LOC101927967
17   chr2   97220858       97325238  NM_001115016        KANSL3
18   chr2   97220858       97325238  NM_001293083        FER1L5
20   chr2  110153193      110490865  NM_001099289        SH3RF3
21   chr2  110153193      110490865  NM_001321504        SEPT10
23   chr2  110153193      110490865     NM_023016        SOWAHC
24   chr9   26567230       27235205     NM_000459           TEK
25   chr9   26567230       27235205  NM_001031689          PLAA
26   chr9   26567230       27235205  NM_001099222         IFT74
29   chr9   26567230       27235205  NM_001167575         CAAP1
31   chr9   26567230       27235205     NM_022901        LRRC19
33   chr9   26567230       27235205     NR_121605     IFT74-AS1,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  245056016      245162722  NM_001143943        EFCAB2
3  chr1  245056016      245162722     NR_111907  LOC101928068
4  chr5  104391485      104541066     NR_000039       RAB9BP1
5  chr9     532129         664210  NM_001256876         KANK1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  241546396      241705754     NM_000143         FH
1    chr1  241546396      241705754     NM_003679        KMO
2   chr11    6685638        6942099  NM_001004460     OR10A2
3   chr11    6685638        6942099  NM_001004489     OR2AG1
4   chr11    6685638        6942099  NM_001004490     OR2AG2
5   chr11    6685638        6942099     NM_003696      OR6A2
6   chr11    6685638        6942099     NM_003700      OR2D2
7   chr11    6685638        6942099     NM_022061     MRPL17
8   chr11    6685638        6942099     NM_178168     OR10A5
9   chr11    6685638        6942099     NM_207186     OR10A4
10  chr11    6685638        6942099     NR_003945     GVINP1
11  chr14   21818032       21980021  NM_001163380      RAB2B
12  chr14   21818032       21980021  NM_001170629       CHD8
13  chr14   21818032       21980021  NM_001303523       TOX4
14  chr14   21818032       21980021     NM_007192    SUPT16H
15  chr14   21818032       21980021     NM_019852     METTL3
16  chr14   21818032       21980021     NM_020366    RPGRIP1
19  chr14   21818032       21980021     NR_002916     SNORD8
20  chr14   21818032       21980021     NR_003029     SNORD9
21  chr16   69996793       70199598  NM_001136214    CLEC18A
23  chr16   69996793       70199598     NM_017990       PDPR
25  chr16   69996793       70199598     NR_003610    PDXDC2P
26  chr16   69996793       70199598     NR_036265  MIR1972-2
27  chr16   69996793       70199598     NR_126007  LOC400541
28   chr3  163701178      164029721     NR_031665    MIR1263,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  143726168      144157557  NM_001123068    PPIAL4G
1   chr1  143726168      144157557  NM_001278267     NBPF20
2   chr1  143726168      144157557  NM_001287385     FAM72C
3   chr1  143726168      144157557  NM_001345942     FAM72D
7   chr1  143726168      144157557     NR_104014  LINC01138
9  chr16    7003344        7126570  NM_001142334     RBFOX1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21877910       21982583  NM_001163380     RAB2B
1  chr14   21877910       21982583  NM_001170629      CHD8
2  chr14   21877910       21982583  NM_001303523      TOX4
3  chr14   21877910       21982583     NM_019852    METTL3
6   chr2  193496508      193616548     NR_002769    PCGEM1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241671679      242011163     NM_000143            FH
1    chr1  241671679      242011163     NM_001821          CHML
2    chr1  241671679      242011163     NM_003679           KMO
3    chr1  241671679      242011163     NM_014322          OPN3
4    chr1  241671679      242011163     NM_144625         WDR64
5   chr15   58887901       59260475  NM_001040450        FAM63B
7   chr15   58887901       59260475     NM_001110        ADAM10
8   chr15   58887901       59260475     NR_073415     HSP90AB4P
9   chr15   58887901       59260475     NR_135043          SLTM
10  chr15   58887901       59260475     NR_135474  LOC101928725
11  chr16   14984014       15095464  NM_001285445        PDXDC1
17  chr16   14984014       15095464     NM_006985        NPIPA1
18  chr16   14984014       15095464     NM_014287         NOMO1
19  chr16   14984014       15095464     NR_036140     MIR3179-1
20  chr16   14984014       15095464     NR_036141     MIR3180-1
21  chr16   14984014       15095464     NR_036142     MIR3180-2
22  chr16   14984014       15095464     NR_103772  LOC100288162
23  chr16   14984014       15095464     NR_106970     MIR6511A3
24  chr16   14984014       15095464     NR_107060     MIR6770-2
25  chr16   14984014       15095464     NR_128713     MIR3670-4
26  chr16   21470163       21615367  NM_001077180        METTL9
28  chr16   21470163       21615367     NR_002594      SLC7A5P2
29  chr16   21470163       21615367     NR_027155        SMG1P3
30  chr16   21470163       21615367     NR_049833     MIR3680-2
31  chr16   21470163       21615367     NR_110930  LOC101927814
32  chr21   22393720       22499339     NM_004540         NCAM2
33   chr8   97744402       97932400     NM_016134           CPQ,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21748802       21934170  NM_001163380     RAB2B
1  chr14   21748802       21934170  NM_001170629      CHD8
2  chr14   21748802       21934170     NM_007192   SUPT16H
3  chr14   21748802       21934170     NM_020366   RPGRIP1
6  chr14   21748802       21934170     NR_002916    SNORD8
7  chr14   21748802       21934170     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21791093       21968467  NM_001163380         RAB2B
1   chr14   21791093       21968467  NM_001170629          CHD8
2   chr14   21791093       21968467  NM_001303523          TOX4
3   chr14   21791093       21968467     NM_007192       SUPT16H
4   chr14   21791093       21968467     NM_019852        METTL3
5   chr14   21791093       21968467     NM_020366       RPGRIP1
8   chr14   21791093       21968467     NR_002916        SNORD8
9   chr14   21791093       21968467     NR_003029        SNORD9
10  chr21   40154012       40672422  NM_001007246         BRWD1
11  chr21   40154012       40672422  NM_001256295          ETS2
12  chr21   40154012       40672422  NM_001261824         PSMG1
16  chr21   40154012       40672422     NR_109926  LOC101928398
17  chr21   40154012       40672422     NR_109962  LOC101928435
18  chr21   40154012       40672422     NR_120405     LOC400867
19   chr6  146442477      146551785  NM_001278064          GRM1
21   chr8  100680052      100790799     NM_017890        VPS13B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28783371       29084942  NM_001282468       GOLGA8M
1   chr15   28783371       29084942     NR_026589       WHAMMP2
2   chr15   28783371       29084942     NR_036443       HERC2P9
3   chr15   28783371       29084942     NR_036475  LOC100289656
4   chr15   28783371       29084942     NR_037599     PDCD6IPP2
5   chr20   14700197       18227287  NM_001033087       MACROD2
6   chr20   14700197       18227287  NM_001042576         RRBP1
7   chr20   14700197       18227287  NM_001159495         BANF2
8   chr20   14700197       18227287  NM_001161705         BFSP1
9   chr20   14700197       18227287  NM_001164811        PET117
11  chr20   14700197       18227287  NM_001199866        KIF16B
12  chr20   14700197       18227287  NM_001201528         PCSK2
15  chr20   14700197       18227287  NM_001303461         OVOL2
16  chr20   14700197       18227287     NM_003092        SNRPB2
17  chr20   14700197       18227287     NM_006870          DSTN
18  chr20   14700197       18227287     NM_014426          SNX5
19  chr20   14700197       18227287     NM_020157          OTOR
20  chr20   14700197       18227287     NM_020536         KAT14
23  chr20   14700197       18227287     NM_052865         MGME1
27  chr20   14700197       18227287     NR_003045       SNORD17
29  chr20   14700197       18227287     NR_037841   MACROD2-AS1
31  chr20   14700197       18227287     NR_130924     LOC613266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67649258       67844168  NM_001127384        CTNNA3
2   chr15   28486912       28614623     NM_004667         HERC2
3   chr22   17216125       17632114  NM_001037814          GAB4
4   chr22   17216125       17632114  NM_001163079         CECR6
5   chr22   17216125       17632114  NM_001289905        IL17RA
6   chr22   17216125       17632114     NM_017829         CECR5
9   chr22   17216125       17632114     NM_175878          XKR3
10  chr22   17216125       17632114     NR_003607       HSFY1P1
11  chr22   17216125       17632114     NR_015352         CECR7
12  chr22   17216125       17632114     NR_103793  LOC100996342
13  chr22   17216125       17632114     NR_134584  LOC101929350
14   chr6  128687865      128895020  NM_001291982         PTPRK
16   chr7  110729452      110856370  NM_001099658         LRRN3
17   chr7  110729452      110856370  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21794252       21994730  NM_001163380      RAB2B
1   chr14   21794252       21994730  NM_001170629       CHD8
2   chr14   21794252       21994730  NM_001303523       TOX4
3   chr14   21794252       21994730     NM_007192    SUPT16H
4   chr14   21794252       21994730     NM_019852     METTL3
5   chr14   21794252       21994730     NM_020366    RPGRIP1
8   chr14   21794252       21994730     NR_002916     SNORD8
9   chr14   21794252       21994730     NR_003029     SNORD9
10  chr14   21794252       21994730     NR_111966      SALL2
12  chr20   41063105       41234870     NM_133170      PTPRT
13   chr6   89398714       89510739  NM_001286428      RNGTT
14   chr8   92695960       93227410  NM_001198628    RUNX1T1
20   chr8   92695960       93227410     NR_106988  MIR7641-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  132213962      132368658  NM_001012393         OPCML
3    chr2  117664794      118625377     NM_006773         DDX18
4    chr2  186583193      186711218     NM_173651         FSIP2
5    chr2  186583193      186711218     NR_110214  LOC101927196
8    chr2  186583193      186711218     NR_144453     FSIP2-AS1
10  chr22   32364581       32514936     NM_000343        SLC5A1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1   86111935       86237671     NM_017953    ZNHIT6
1   chr1   86111935       86237671     NM_152890   COL24A1
2  chr11   40745590       41094432  NM_001258419    LRRC4C
3  chr16   21849564       21981510  NM_001310148    NPIPB4
4  chr16   21849564       21981510     NM_003366    UQCRC2
5  chr16   58762065       58864267  NM_001286220      GOT2
6  chr22   17256072       17366941     NM_175878      XKR3
7  chr22   17256072       17366941     NR_003607   HSFY1P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   21296759       21408137  NM_001288713         NELL1
1   chr16   16346375       16652523  NM_001004067         NOMO3
2   chr16   16346375       16652523  NM_001282511        NPIPA8
3   chr16   16346375       16652523     NR_036140     MIR3179-1
4   chr16   16346375       16652523     NR_036141     MIR3180-1
5   chr16   16346375       16652523     NR_036142     MIR3180-2
6   chr16   16346375       16652523     NR_036447        PKD1P1
7   chr16   16346375       16652523     NR_103772  LOC100288162
8   chr16   16346375       16652523     NR_106766     MIR6511A1
9   chr16   16346375       16652523     NR_106971     MIR6511A4
10  chr16   16346375       16652523     NR_107060     MIR6770-2
11  chr16   16346375       16652523     NR_128713     MIR3670-4
12  chr16   21773921       22195378  NM_001164579      C16orf52
13  chr16   21773921       22195378  NM_001310148        NPIPB4
14  chr16   21773921       22195378     NM_003366        UQCRC2
15  chr16   21773921       22195378     NM_173615         VWA3A
16  chr16   21773921       22195378     NM_173806         PDZD9
17  chr16   21773921       22195378     NR_003370        RRN3P1
18   chr2   51162858       51532117  NM_001330079         NRXN1
21   chr2   51162858       51532117     NR_135237     LOC730100
22   chr2   84699288       84841011     NM_001370         DNAH6
23   chr2  107682328      107980929     NR_049853      MIR548AU,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108361572      108532174     NM_006113          VAV3
1    chr1  108361572      108532174     NR_046653      VAV3-AS1
2    chr1  108361572      108532174     NR_107006       MIR7852
3   chr15   28131726       28322364     NM_000275          OCA2
5   chr16   14779744       15044328  NM_001277323        NPIPA3
7   chr16   14779744       15044328  NM_001277324        NPIPA2
9   chr16   14779744       15044328     NM_006985        NPIPA1
10  chr16   14779744       15044328     NM_014287         NOMO1
11  chr16   14779744       15044328     NR_023387       ABCC6P2
12  chr16   14779744       15044328     NR_036140     MIR3179-1
13  chr16   14779744       15044328     NR_036141     MIR3180-1
14  chr16   14779744       15044328     NR_036142     MIR3180-2
15  chr16   14779744       15044328     NR_103772  LOC100288162
16  chr16   14779744       15044328     NR_106970     MIR6511A3
17  chr16   14779744       15044328     NR_107060     MIR6770-2
18  chr16   14779744       15044328     NR_128713     MIR3670-4
19  chr16   14779744       15044328     NR_133651       PLA2G10
20   chr2  186588264      186805483     NM_173651         FSIP2
21   chr2  186588264      186805483     NR_110214  LOC101927196
24   chr2  186588264      186805483     NR_144453     FSIP2-AS1
26   chr3  162842348      162943720     NR_033945     LINC01192,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21725434       22127780  NM_001005465    OR10G3
1   chr14   21725434       22127780  NM_001005466    OR10G2
2   chr14   21725434       22127780  NM_001163380     RAB2B
3   chr14   21725434       22127780  NM_001170629      CHD8
4   chr14   21725434       22127780  NM_001303523      TOX4
5   chr14   21725434       22127780     NM_007192   SUPT16H
6   chr14   21725434       22127780     NM_019852    METTL3
7   chr14   21725434       22127780     NM_020366   RPGRIP1
9   chr14   21725434       22127780     NM_031314    HNRNPC
11  chr14   21725434       22127780     NR_002916    SNORD8
12  chr14   21725434       22127780     NR_003029    SNORD9
13  chr14   21725434       22127780     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28757328       29005680  NM_001282468       GOLGA8M
1   chr15   28757328       29005680     NR_026589       WHAMMP2
2   chr15   28757328       29005680     NR_033351       GOLGA8F
3   chr15   28757328       29005680     NR_033353       GOLGA8G
4   chr15   28757328       29005680     NR_036443       HERC2P9
5   chr15   30315055       30496025  NM_001282472       GOLGA8J
6   chr15   30315055       30496025     NR_026771  DKFZP434L187
7   chr15   30315055       30496025     NR_026859        ULK4P3
8   chr15   30315055       30496025     NR_033933       GOLGA8T
9   chr20   14720568       14865791     NM_080676       MACROD2
10  chr20   14720568       14865791     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27127819       27448833  NM_001080406      C12orf71
1   chr12   27127819       27448833  NM_001271811         MED21
2   chr12   27127819       27448833     NM_015000        STK38L
3   chr12   27127819       27448833     NM_016551        TM7SF3
4   chr13   63338277       63598744     NR_047029     LINC00448
7   chr14   21735706       21951781  NM_001163380         RAB2B
8   chr14   21735706       21951781  NM_001170629          CHD8
9   chr14   21735706       21951781  NM_001303523          TOX4
10  chr14   21735706       21951781     NM_007192       SUPT16H
11  chr14   21735706       21951781     NM_020366       RPGRIP1
13  chr14   21735706       21951781     NM_031314        HNRNPC
15  chr14   21735706       21951781     NR_002916        SNORD8
16  chr14   21735706       21951781     NR_003029        SNORD9
17   chr2     866019         994993     NM_018968         SNTG2
18   chr2     866019         994993     NR_110179  LOC101060385
19   chr2     866019         994993     NR_136151  LOC101060391
20   chr4   16177732       16765484     NM_001290          LDB2
21   chr4   16177732       16765484     NM_153365         TAPT1
22   chr4   16177732       16765484     NR_027696     TAPT1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  135257033      135399764     NM_000773        CYP2E1
1   chr10  135257033      135399764  NM_001143763         SYCE1
4   chr10  135257033      135399764     NR_002934        SCART1
5   chr10  135257033      135399764     NR_033789        SPRNP1
6   chr14   45642967       45974235  NM_001308133         FANCM
7   chr14   45642967       45974235     NM_018353      MIS18BP1
8   chr16   16385083       17543524  NM_001004067         NOMO3
9   chr16   16385083       17543524  NM_001282511        NPIPA8
10  chr16   16385083       17543524     NM_022166         XYLT1
11  chr16   16385083       17543524     NR_036140     MIR3179-1
12  chr16   16385083       17543524     NR_036141     MIR3180-1
13  chr16   16385083       17543524     NR_036142     MIR3180-2
14  chr16   16385083       17543524     NR_036447        PKD1P1
15  chr16   16385083       17543524     NR_103772  LOC100288162
16  chr16   16385083       17543524     NR_106766     MIR6511A1
17  chr16   16385083       17543524     NR_106971     MIR6511A4
18  chr16   16385083       17543524     NR_107060     MIR6770-2
19  chr16   16385083       17543524     NR_128713     MIR3670-4
20  chr16   16385083       17543524     NR_135179  LOC102723692
21  chr17   29350981       29922275     NM_000267           NF1
22  chr17   29350981       29922275  NM_001003927         EVI2A
24  chr17   29350981       29922275  NM_001303542     RAB11FIP4
25  chr17   29350981       29922275     NM_002544           OMG
26  chr17   29350981       29922275     NM_006495         EVI2B
28  chr17   29350981       29922275     NR_029710       MIR193A
29  chr17   29350981       29922275     NR_029856       MIR365B
30  chr17   29350981       29922275     NR_039877       MIR4724
31  chr17   29350981       29922275     NR_039878       MIR4725
32  chr17   29350981       29922275     NR_039886       MIR4733
33   chr7  110348806      111887167  NM_001099658         LRRN3
34   chr7  110348806      111887167  NM_001244606        IMMP2L
35   chr7  110348806      111887167     NM_014705         DOCK4
36   chr7  110348806      111887167     NM_021994        ZNF277
38   chr7  110348806      111887167     NR_103806     DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21789685       21921001  NM_001170629       CHD8
1   chr14   21789685       21921001     NM_007192    SUPT16H
2   chr14   21789685       21921001     NM_020366    RPGRIP1
4   chr14   21789685       21921001     NR_002916     SNORD8
5   chr14   21789685       21921001     NR_003029     SNORD9
6   chr21   23160746       23363765     NR_109958  LINC01425
7   chr22   19948564       20148380     NM_000754       COMT
10  chr22   19948564       20148380  NM_001190326      DGCR8
11  chr22   19948564       20148380  NM_001243537    CCDC188
12  chr22   19948564       20148380  NM_001278639     RANBP1
15  chr22   19948564       20148380  NM_001283116     TANGO2
18  chr22   19948564       20148380     NM_001670      ARVCF
20  chr22   19948564       20148380     NM_013373     ZDHHC8
21  chr22   19948564       20148380     NM_022727     TRMT2A
22  chr22   19948564       20148380     NR_029706     MIR185
23  chr22   19948564       20148380     NR_031706    MIR1306
24  chr22   19948564       20148380     NR_037412    MIR3618
25  chr22   19948564       20148380     NR_039918    MIR4761
26  chr22   19948564       20148380     NR_106874    MIR6816
27   chr6  154052731      154337153  NM_001145279      OPRM1,    chrom  cnv_start  cnv_terminate    tx_name     gene_name
0   chr2  195525223      195705365  NR_110223  LOC101927431
1  chr20   14704663       14908695  NM_080676       MACROD2
2  chr20   14704663       14908695  NR_037841   MACROD2-AS1
4   chr6  162532771      162639147  NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143591693      144110962  NM_001123068       PPIAL4G
1    chr1  143591693      144110962  NM_001287385        FAM72C
2    chr1  143591693      144110962  NM_001345942        FAM72D
6    chr1  143591693      144110962     NR_104014     LINC01138
7    chr1  143591693      144110962     NR_106967       MIR6077
8    chr1  143591693      144110962     NR_111930  LOC100132057
10  chr11  134344203      134662043     NR_033852     LOC283177
11   chr2  234390771      234557880     NM_018218         USP40
12   chr2  234390771      234557880     NM_019075       UGT1A10
13   chr2  234390771      234557880     NM_019076        UGT1A8
14  chr20    8034405        8145152     NM_015192         PLCB1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143610335      144787756  NM_001123068       PPIAL4G
1    chr1  143610335      144787756  NM_001135789       PPIAL4C
2    chr1  143610335      144787756  NM_001277444         NBPF9
3    chr1  143610335      144787756  NM_001278267        NBPF20
4    chr1  143610335      144787756  NM_001287385        FAM72C
5    chr1  143610335      144787756  NM_001345942        FAM72D
9    chr1  143610335      144787756     NR_003242        PFN1P2
10   chr1  143610335      144787756     NR_024511     LINC00623
12   chr1  143610335      144787756     NR_102405         NBPF8
13   chr1  143610335      144787756     NR_104014     LINC01138
14   chr1  143610335      144787756     NR_106967       MIR6077
15   chr1  143610335      144787756     NR_111930  LOC100132057
16   chr1  143610335      144787756     NR_111953     LINC00869
18  chr12   85474002       85574731  NM_001079910        LRRIQ1
19  chr19   33142828       33248732  NM_001105570        NUDT19
20  chr19   33142828       33248732  NM_001110822        TDRD12
21  chr19   33142828       33248732     NM_032139       ANKRD27
22  chr19   33142828       33248732     NM_207391        RGS9BP
23   chr8    7875217        8098522     NR_024361      FAM86B3P
26   chr8    7875217        8098522     NR_031689      MIR548I3
27   chr9   39101258       39246481     NM_033655       CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   80873942       80994887  NM_001318536      SPRY2
3  chr22   17263240       17456212  NM_001037814       GAB4
4  chr22   17263240       17456212     NM_175878       XKR3
5  chr22   17263240       17456212     NR_003607    HSFY1P1
6   chr7   63014615       63204767     NR_036246  MIR4283-1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   38919085       39134411     NR_045000     ACTR3BP5
1   chr11   83950619       84486443  NM_001142699         DLG2
5   chr11   89739245       89856247  NM_001143975       UBTFL1
6   chr11   89739245       89856247  NM_001195234      TRIM49C
7   chr20   14766013       14974917     NM_080676      MACROD2
8   chr20   14766013       14974917     NR_037841  MACROD2-AS1
10  chr22   17260343       17414353     NM_175878         XKR3
11  chr22   17260343       17414353     NR_003607      HSFY1P1
12  chr22   19031347       19266251  NM_001184781        DGCR2
13  chr22   19031347       19266251  NM_001256534      SLC25A1
14  chr22   19031347       19266251     NM_001835       CLTCL1
15  chr22   19031347       19266251     NM_005315         GSC2
17  chr22   19031347       19266251     NM_022719       DGCR14
18  chr22   19031347       19266251     NM_053006        TSSK2
19  chr22   19031347       19266251     NR_024157       DGCR11
20  chr22   19031347       19266251     NR_103767    LINC01311,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  121977006      122672461  NM_001001786       BLID
1   chr11  121977006      122672461     NM_032873    UBASH3B
2   chr11  121977006      122672461     NR_024430   MIR100HG
3   chr11  121977006      122672461     NR_029477  MIRLET7A2
4   chr11  121977006      122672461     NR_029515     MIR100
11   chr2    1111051        1228362     NM_018968      SNTG2
12   chr2  193476316      193694048     NR_002769     PCGEM1
13  chr22   17257540       17479164  NM_001037814       GAB4
14  chr22   17257540       17479164     NM_175878       XKR3
15  chr22   17257540       17479164     NR_003607    HSFY1P1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   79734421       79876000     NR_104660  LINC01229
2  chr16   79734421       79876000     NR_104663     MAFTRR
3   chr5   17616530       18446745     NR_134286  LOC646241
5   chr8   50546398       50894168  NM_001287813      SNTG1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   48283784       48407045  NM_001004702     OR4C3
1   chr11   48283784       48407045  NM_001004725     OR4S1
2   chr11   48283784       48407045  NM_001004726     OR4X1
3   chr11   48283784       48407045  NM_001005513    OR4C45
4   chr11   59420886       59566788  NM_001005324    OR10V1
5   chr11   59420886       59566788  NM_001178040      STX3
6   chr11   59420886       59566788     NM_152716     PATL1
7   chr11   59420886       59566788     NR_045005   OR10V2P
8   chr15   78312667       78430707  NM_001101404     SH2D7
9   chr15   78312667       78430707  NM_001301224      CIB2
10  chr15   78312667       78430707     NM_015079   TBC1D2B,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  102425322      102846563     NR_110211     OLFM3
1    chr2   95937197       96041269  NM_001034914    KCNIP3
2    chr2   95937197       96041269  NM_001321070     PROM2
4   chr22   18970391       19153902  NM_001184781     DGCR2
5   chr22   18970391       19153902     NM_005315      GSC2
6   chr22   18970391       19153902     NM_022719    DGCR14
7   chr22   18970391       19153902     NM_053006     TSSK2
8   chr22   18970391       19153902     NR_002733     DGCR5
9   chr22   18970391       19153902     NR_024157    DGCR11
10  chr22   18970391       19153902     NR_024159     DGCR9
11  chr22   18970391       19153902     NR_026651    DGCR10
13   chr8   19738932       20019920     NM_000237       LPL
14   chr8   19738932       20019920  NM_001135691   SLC18A1
15   chr9   28561013       28725378  NM_001258282    LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  128361018      128639143  NM_001290223         DOCK1
1   chr13   22437222       22633880     NR_047040     LINC00424
2   chr20   14778370       14901596     NM_080676       MACROD2
3   chr20   14778370       14901596     NR_037841   MACROD2-AS1
5    chr7  146484841      146911452     NM_014141       CNTNAP2
6    chr7  146484841      146911452     NR_110829  LOC101928700
7    chr8   50518335       50872257  NM_001287813         SNTG1
11   chr9   41558183       41730923     NR_003528       ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   56486236       56621545  NM_001142770    PCDH15
3   chr11   84015494       84166180  NM_001142699      DLG2
6   chr14   21874388       22141050  NM_001001912     OR4E2
7   chr14   21874388       22141050  NM_001005465    OR10G3
8   chr14   21874388       22141050  NM_001005466    OR10G2
9   chr14   21874388       22141050  NM_001163380     RAB2B
10  chr14   21874388       22141050  NM_001170629      CHD8
11  chr14   21874388       22141050  NM_001303523      TOX4
12  chr14   21874388       22141050  NM_001317107     OR4E1
13  chr14   21874388       22141050     NM_019852    METTL3
16  chr14   21874388       22141050     NR_111966     SALL2
18  chr15   79744071       79927260     NM_015206  KIAA1024,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   40706960       41154931  NM_001258419        LRRC4C
1   chr16   16387973       16531361  NM_001004067         NOMO3
2   chr16   16387973       16531361  NM_001282511        NPIPA8
3   chr16   16387973       16531361     NR_036140     MIR3179-1
4   chr16   16387973       16531361     NR_036141     MIR3180-1
5   chr16   16387973       16531361     NR_036142     MIR3180-2
6   chr16   16387973       16531361     NR_036447        PKD1P1
7   chr16   16387973       16531361     NR_103772  LOC100288162
8   chr16   16387973       16531361     NR_106766     MIR6511A1
9   chr16   16387973       16531361     NR_106971     MIR6511A4
10  chr16   16387973       16531361     NR_107060     MIR6770-2
11  chr16   16387973       16531361     NR_128713     MIR3670-4,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr3   60325247       60769541  NM_001320899      FHIT
1  chr3   60325247       60769541     NR_128708  MIR548BB
2  chr5  104241944      105830549     NR_000039   RAB9BP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28717190       30341146  NM_001130414         APBA2
1   chr15   28717190       30341146  NM_001282468       GOLGA8M
2   chr15   28717190       30341146  NM_001301025          TJP1
5   chr15   28717190       30341146     NM_015307      FAM189A1
6   chr15   28717190       30341146     NM_138704        NSMCE3
7   chr15   28717190       30341146     NR_026589       WHAMMP2
8   chr15   28717190       30341146     NR_033351       GOLGA8F
9   chr15   28717190       30341146     NR_033353       GOLGA8G
10  chr15   28717190       30341146     NR_036443       HERC2P9
11  chr15   28717190       30341146     NR_036475  LOC100289656
12  chr15   28717190       30341146     NR_037599     PDCD6IPP2
13  chr15   28717190       30341146     NR_039734     MIR4509-3
14  chr15   28717190       30341146     NR_047567     GOLGA6L7P
15  chr15   28717190       30341146     NR_135221  LOC100130111,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  102374860      102597516     NR_110211         OLFM3
1   chr10   27598857       27914935  NM_001034842        PTCHD3
2   chr10   27598857       27914935  NM_001256411         RAB18
3   chr10   27598857       27914935     NR_138082       ARMC4P1
4   chr14   21892875       22891249  NM_001001912         OR4E2
5   chr14   21892875       22891249  NM_001005465        OR10G3
6   chr14   21892875       22891249  NM_001005466        OR10G2
7   chr14   21892875       22891249  NM_001163380         RAB2B
8   chr14   21892875       22891249  NM_001170629          CHD8
9   chr14   21892875       22891249  NM_001303523          TOX4
10  chr14   21892875       22891249  NM_001317107         OR4E1
11  chr14   21892875       22891249     NM_019852        METTL3
14  chr14   21892875       22891249     NR_111966         SALL2
16  chr15   98244942       98345671     NR_024172     LINC00923
17  chr20   41062791       41571837     NM_133170         PTPRT
18  chr20   41062791       41571837     NR_110004  LOC101927159,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28701633       29161415  NM_001282468       GOLGA8M
1   chr15   28701633       29161415     NR_026589       WHAMMP2
2   chr15   28701633       29161415     NR_033351       GOLGA8F
3   chr15   28701633       29161415     NR_033353       GOLGA8G
4   chr15   28701633       29161415     NR_036443       HERC2P9
5   chr15   28701633       29161415     NR_036475  LOC100289656
6   chr15   28701633       29161415     NR_037599     PDCD6IPP2
7   chr15   28701633       29161415     NR_039734     MIR4509-3
8   chr15   28701633       29161415     NR_047567     GOLGA6L7P
9   chr16   21505218       21631783  NM_001077180        METTL9
11  chr16   21505218       21631783     NR_002594      SLC7A5P2
12  chr16   21505218       21631783     NR_027155        SMG1P3
13  chr16   21505218       21631783     NR_049833     MIR3680-2
14  chr16   21505218       21631783     NR_110930  LOC101927814,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12814159       12931161  NM_001013631      HNRNPCL1
1    chr1   12814159       12931161  NM_001080830      PRAMEF12
2    chr1   12814159       12931161  NM_001146181      HNRNPCL3
3    chr1   12814159       12931161  NM_001146344      PRAMEF11
4    chr1   12814159       12931161  NM_001294139       PRAMEF1
5    chr1   12814159       12931161  NM_001302551      HNRNPCL4
7    chr1   12814159       12931161     NM_023014       PRAMEF2
8    chr1   12814159       12931161     NM_152290      C1orf158
9   chr16   18294446       18565925  NM_001004060         NOMO2
10  chr16   18294446       18565925  NM_001282511        NPIPA8
11  chr16   18294446       18565925     NR_036140     MIR3179-1
12  chr16   18294446       18565925     NR_036142     MIR3180-2
13  chr16   18294446       18565925     NR_036144     MIR3180-3
14  chr16   18294446       18565925     NR_037442     MIR3670-1
15  chr16   18294446       18565925     NR_103772  LOC100288162
16  chr16   18294446       18565925     NR_106971     MIR6511A4
17  chr16   18294446       18565925     NR_107060     MIR6770-2
18  chr20   14703998       14863554     NM_080676       MACROD2
19   chr5  104883403      106176056     NR_104671  LOC102467213
20   chr7   11765815       11975280     NM_015204        THSD7A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21773066       22066153  NM_001005465        OR10G3
1   chr14   21773066       22066153  NM_001163380         RAB2B
2   chr14   21773066       22066153  NM_001170629          CHD8
3   chr14   21773066       22066153  NM_001303523          TOX4
4   chr14   21773066       22066153     NM_007192       SUPT16H
5   chr14   21773066       22066153     NM_019852        METTL3
6   chr14   21773066       22066153     NM_020366       RPGRIP1
9   chr14   21773066       22066153     NR_002916        SNORD8
10  chr14   21773066       22066153     NR_003029        SNORD9
11  chr14   21773066       22066153     NR_111966         SALL2
13   chr4   69251869       69356334     NM_014058     TMPRSS11E
14   chr9   66611527       67343184     NR_002817        AQP7P1
15   chr9   66611527       67343184     NR_046175     LOC286297
16   chr9   66611527       67343184     NR_121570  LOC101928381
17   chr9   66611527       67343184     NR_135597  LOC101928195
18   chr9   66611527       67343184     NR_136299  LOC101929583
19   chr9   66611527       67343184     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81497241       81815630     NM_003019         SFTPD
1   chr10   81497241       81815630     NR_002724         MBL1P
2   chr10   81497241       81815630     NR_027431   TMEM254-AS1
3   chr10   81497241       81815630     NR_029407     LOC642361
4   chr10   81497241       81815630     NR_033857       BMS1P21
5   chr10   81497241       81815630     NR_120611    NUTM2B-AS1
8   chr16   16383902       16625755  NM_001004067         NOMO3
9   chr16   16383902       16625755  NM_001282511        NPIPA8
10  chr16   16383902       16625755     NR_036140     MIR3179-1
11  chr16   16383902       16625755     NR_036141     MIR3180-1
12  chr16   16383902       16625755     NR_036142     MIR3180-2
13  chr16   16383902       16625755     NR_036447        PKD1P1
14  chr16   16383902       16625755     NR_103772  LOC100288162
15  chr16   16383902       16625755     NR_106766     MIR6511A1
16  chr16   16383902       16625755     NR_106971     MIR6511A4
17  chr16   16383902       16625755     NR_107060     MIR6770-2
18  chr16   16383902       16625755     NR_128713     MIR3670-4
19   chr7  110614948      110888925  NM_001099658         LRRN3
20   chr7  110614948      110888925  NM_001244606        IMMP2L
22   chr9   41896032       41997566     NR_003670        FGF7P3
23   chr9   41896032       41997566     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  104194123      104324431  NM_001008218          AMY1B
3    chr1  104194123      104324431  NM_001008219          AMY1C
6    chr1  104194123      104324431  NM_001008221          AMY1A
12  chr10   67634215       68015021  NM_001127384         CTNNA3
14  chr14   21828103       22130395  NM_001005465         OR10G3
15  chr14   21828103       22130395  NM_001005466         OR10G2
16  chr14   21828103       22130395  NM_001163380          RAB2B
17  chr14   21828103       22130395  NM_001170629           CHD8
18  chr14   21828103       22130395  NM_001303523           TOX4
19  chr14   21828103       22130395     NM_007192        SUPT16H
20  chr14   21828103       22130395     NM_019852         METTL3
23  chr14   21828103       22130395     NR_002916         SNORD8
24  chr14   21828103       22130395     NR_003029         SNORD9
25  chr14   21828103       22130395     NR_111966          SALL2
27  chr16   29475661       29620854  NM_001017390        SULT1A4
28  chr16   29475661       29620854     NR_002556      LOC388242
29  chr16   29475661       29620854     NR_037608  SLX1A-SULT1A3
30  chr16   29475661       29620854     NR_049833      MIR3680-2
31  chr16   29475661       29620854     NR_135305         SMG1P2
33  chr18   55749549       55873434  NM_001144964         NEDD4L
37   chr2   97290600       97461813  NM_001115016         KANSL3
38   chr2   97290600       97461813  NM_001293083         FER1L5
39   chr2   97290600       97461813  NM_001322354         LMAN2L
40   chr2   97290600       97461813     NM_020184          CNNM4
43  chr22   17216360       17498579  NM_001037814           GAB4
44  chr22   17216360       17498579     NM_175878           XKR3
45  chr22   17216360       17498579     NR_003607        HSFY1P1
46  chr22   17216360       17498579     NR_134584   LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   55824360       55995859  NM_001142770       PCDH15
3   chr11   67301701       67438210     NM_000695      ALDH3B2
4   chr11   67301701       67438210     NM_000852        GSTP1
6   chr11   67301701       67438210  NM_001166102       NDUFV1
7   chr11   67301701       67438210  NM_001243750        NUDT8
8   chr11   67301701       67438210     NM_005995        TBX10
9   chr11   67301701       67438210     NM_080658         ACY3
11  chr11   67301701       67438210     NR_033791       DOC2GP
12  chr11   67301701       67438210     NR_130935     C11orf72
13  chr11   89137684       89238147  NM_001143837         NOX4
19   chr2  242426461      242619033  NM_001164356        THAP4
20   chr2  242426461      242619033  NM_001165031        DTYMK
21   chr2  242426461      242619033  NM_001271978        STK25
24   chr2  242426461      242619033     NM_014808        FARP2
26   chr2  242426461      242619033     NM_032515          BOK
27   chr2  242426461      242619033     NM_178326        ATG4B
28   chr2  242426461      242619033     NR_033346      BOK-AS1
29  chr20   14755468       15350935  NM_001033087      MACROD2
31  chr20   14755468       15350935     NR_037841  MACROD2-AS1
33   chr3  131234757      131379886  NM_001289112        CPNE4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   40714151       40825836  NM_001258419        LRRC4C
1   chr11   48384947       48580245  NM_001005512        OR4A47
2   chr12    9357806        9484519     NM_002864           PZP
3   chr12    9357806        9484519     NR_024374     LOC642846
4   chr12    9357806        9484519     NR_036466     LINC00987
5   chr12    9357806        9484519     NR_040112         A2MP1
6   chr12    9357806        9484519     NR_128710     MIR1244-4
8   chr15   28612142       31274347  NM_001039841     ARHGAP11B
9   chr15   28612142       31274347  NM_001130414         APBA2
10  chr15   28612142       31274347  NM_001146094          FAN1
12  chr15   28612142       31274347  NM_001282468       GOLGA8M
13  chr15   28612142       31274347  NM_001282472       GOLGA8J
14  chr15   28612142       31274347  NM_001282484       GOLGA8R
15  chr15   28612142       31274347  NM_001282490       GOLGA8H
16  chr15   28612142       31274347  NM_001301025          TJP1
20  chr15   28612142       31274347     NM_015307      FAM189A1
21  chr15   28612142       31274347     NM_017762        MTMR10
22  chr15   28612142       31274347     NM_138704        NSMCE3
23  chr15   28612142       31274347     NM_139320      CHRFAM7A
24  chr15   28612142       31274347     NR_026589       WHAMMP2
25  chr15   28612142       31274347     NR_026771  DKFZP434L187
26  chr15   28612142       31274347     NR_026858        ULK4P1
27  chr15   28612142       31274347     NR_026859        ULK4P3
28  chr15   28612142       31274347     NR_033351       GOLGA8F
30  chr15   28612142       31274347     NR_033353       GOLGA8G
32  chr15   28612142       31274347     NR_033933       GOLGA8T
33  chr15   28612142       31274347     NR_036443       HERC2P9
34  chr15   28612142       31274347     NR_036475  LOC100289656
35  chr15   28612142       31274347     NR_037599     PDCD6IPP2
36  chr15   28612142       31274347     NR_038253  LOC100288637
38  chr15   28612142       31274347     NR_039734     MIR4509-3
40  chr15   28612142       31274347     NR_047567     GOLGA6L7P
41  chr15   28612142       31274347     NR_072991      HERC2P10
42  chr15   28612142       31274347     NR_135221  LOC100130111
43   chr5  152204322      152438713     NR_109877     LINC01470,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145284491      145717353  NM_001012758        NUDT17
1    chr1  145284491      145717353  NM_001039888      ANKRD34A
2    chr1  145284491      145717353  NM_001184795        PEX11B
3    chr1  145284491      145717353  NM_001277444         NBPF9
4    chr1  145284491      145717353  NM_001278267        NBPF20
5    chr1  145284491      145717353  NM_001280799       ANKRD35
6    chr1  145284491      145717353  NM_001302371        NBPF10
7    chr1  145284491      145717353  NM_001303040        ITGA10
8    chr1  145284491      145717353  NM_001303456        POLR3C
9    chr1  145284491      145717353  NM_001313972         TXNIP
11   chr1  145284491      145717353     NM_005105         RBM8A
12   chr1  145284491      145717353     NM_006099         PIAS3
15   chr1  145284491      145717353     NM_007053         CD160
16   chr1  145284491      145717353     NM_014455        RNF115
17   chr1  145284491      145717353     NM_032305       POLR3GL
18   chr1  145284491      145717353     NM_145277          HFE2
19   chr1  145284491      145717353     NM_153713         LIX1L
20   chr1  145284491      145717353     NM_203458      NOTCH2NL
21   chr1  145284491      145717353     NR_002328        GNRHR2
25   chr1  145284491      145717353     NR_104217       NBPF25P
26   chr1  145284491      145717353     NR_106794       MIR6736
27   chr1  145284491      145717353     NR_125967  LOC101928979
28  chr14   21668640       22094647  NM_001005465        OR10G3
29  chr14   21668640       22094647  NM_001163380         RAB2B
30  chr14   21668640       22094647  NM_001170629          CHD8
31  chr14   21668640       22094647  NM_001303523          TOX4
32  chr14   21668640       22094647     NM_007192       SUPT16H
33  chr14   21668640       22094647     NM_019852        METTL3
34  chr14   21668640       22094647     NM_020366       RPGRIP1
36  chr14   21668640       22094647     NM_031314        HNRNPC
38  chr14   21668640       22094647     NR_002916        SNORD8
39  chr14   21668640       22094647     NR_003029        SNORD9
40  chr14   21668640       22094647     NR_038970     LINC00641
42  chr14   21668640       22094647     NR_111966         SALL2
44  chr21   23411701       23545675     NR_038400     LINC00308
45  chr21   23411701       23545675     NR_109959  LOC101927843
46   chr6  162789948      162906998     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143689486      143917909  NM_001123068       PPIAL4G
1    chr1  143689486      143917909  NM_001287385        FAM72C
2    chr1  143689486      143917909  NM_001345942        FAM72D
6    chr1  143689486      143917909     NR_104014     LINC01138
7    chr1  143689486      143917909     NR_111930  LOC100132057
9   chr15   28219208       28351740     NM_000275          OCA2
11   chr9   28178416       28297645  NM_001258282        LINGO2
13   chr9   67099652       68517010  NM_001012419     ANKRD20A3
14   chr9   67099652       68517010     NM_032250     ANKRD20A1
15   chr9   67099652       68517010     NR_002817        AQP7P1
16   chr9   67099652       68517010     NR_027422        FAM27B
17   chr9   67099652       68517010     NR_033907        FRG1JP
18   chr9   67099652       68517010     NR_039689      MIR4477B
19   chr9   67099652       68517010     NR_103833       FAM27E3
20   chr9   67099652       68517010     NR_121606  LOC102723709
21   chr9   67099652       68517010     NR_136300  LOC102724580
22   chr9   67099652       68517010     NR_144466  LOC105379807,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21769259       21895426  NM_001170629       CHD8
1   chr14   21769259       21895426     NM_007192    SUPT16H
2   chr14   21769259       21895426     NM_020366    RPGRIP1
4   chr14   21769259       21895426     NR_002916     SNORD8
5   chr14   21769259       21895426     NR_003029     SNORD9
6   chr20   41068040       41257925     NM_133170      PTPRT
7    chr5   17696064       18014329     NR_134286  LOC646241
9    chr7   94258680       94394625  NM_001184962      PEG10
10   chr7   94258680       94394625  NM_001301139       SGCE
11   chr7  110529460      110902034  NM_001099658      LRRN3
12   chr7  110529460      110902034  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    5427254        5619632  NM_001003819  TRIM6-TRIM34
1   chr11    5427254        5619632  NM_001004754        OR51I2
2   chr11    5427254        5619632  NM_001004757        OR51Q1
3   chr11    5427254        5619632  NM_001005162        OR52B6
4   chr11    5427254        5619632  NM_001005163        OR52D1
5   chr11    5427254        5619632  NM_001005288        OR51I1
6   chr11    5427254        5619632  NM_001005289        OR52H1
7   chr11    5427254        5619632  NM_001005567        OR51B5
8   chr11    5427254        5619632  NM_001198644         TRIM6
9   chr11    5427254        5619632     NM_017481        UBQLN3
11  chr11    5427254        5619632     NM_145053        UBQLNL
13  chr11    5427254        5619632     NR_133006        OLFM5P
14  chr14   21754699       21868349  NM_001170629          CHD8
15  chr14   21754699       21868349     NM_007192       SUPT16H
16  chr14   21754699       21868349     NM_020366       RPGRIP1
18  chr14   21754699       21868349     NR_002916        SNORD8
19  chr14   21754699       21868349     NR_003029        SNORD9
20  chr14   21910995       22034880  NM_001163380         RAB2B
21  chr14   21910995       22034880  NM_001303523          TOX4
22  chr14   21910995       22034880     NM_019852        METTL3
24  chr14   21910995       22034880     NR_111966         SALL2
26   chr9   39084767       39262722     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21808104       22860382  NM_001001912         OR4E2
1   chr14   21808104       22860382  NM_001005465        OR10G3
2   chr14   21808104       22860382  NM_001005466        OR10G2
3   chr14   21808104       22860382  NM_001163380         RAB2B
4   chr14   21808104       22860382  NM_001170629          CHD8
5   chr14   21808104       22860382  NM_001303523          TOX4
6   chr14   21808104       22860382  NM_001317107         OR4E1
7   chr14   21808104       22860382     NM_007192       SUPT16H
8   chr14   21808104       22860382     NM_019852        METTL3
9   chr14   21808104       22860382     NM_020366       RPGRIP1
12  chr14   21808104       22860382     NR_002916        SNORD8
13  chr14   21808104       22860382     NR_003029        SNORD9
14  chr14   21808104       22860382     NR_111966         SALL2
16  chr14   47733459       47836933  NM_001113498         MDGA2
19  chr18   24749575       24954581  NM_001256316         CHST9
20  chr18   24749575       24954581     NR_134589  LOC105372038,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   19656460       19793388  NM_001142308    MALRD1
1   chr22   17251784       17383790     NM_175878      XKR3
2   chr22   17251784       17383790     NR_003607   HSFY1P1
3   chr22   19023689       19148075  NM_001184781     DGCR2
4   chr22   19023689       19148075     NM_005315      GSC2
5   chr22   19023689       19148075     NM_022719    DGCR14
6   chr22   19023689       19148075     NM_053006     TSSK2
7   chr22   19023689       19148075     NR_024157    DGCR11
8    chr4  169176337      169422074  NM_001012967    DDX60L
9    chr4  169176337      169422074  NM_001166108     PALLD
11   chr4  169176337      169422074     NM_017631     DDX60
12   chr7   94241012       94384421  NM_001184962     PEG10
13   chr7   94241012       94384421  NM_001301139      SGCE,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   16399279       16573252  NM_001282511        NPIPA8
1  chr16   16399279       16573252     NR_036141     MIR3180-1
2  chr16   16399279       16573252     NR_036142     MIR3180-2
3  chr16   16399279       16573252     NR_036447        PKD1P1
4  chr16   16399279       16573252     NR_103772  LOC100288162
5  chr16   16399279       16573252     NR_106766     MIR6511A1
6  chr16   16399279       16573252     NR_106971     MIR6511A4
7  chr16   16399279       16573252     NR_107060     MIR6770-2
8  chr16   16399279       16573252     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87708654       87813773  NM_001290053  LOC101927844
1    chr1   87708654       87813773     NM_006769          LMO4
2   chr12   72612579       72715739     NM_013381         TRHDE
3   chr12   72612579       72715739     NR_026836     TRHDE-AS1
5   chr13   54804115       55132922     NR_031628       MIR1297
6   chr14   21921053       22223794  NM_001001912         OR4E2
7   chr14   21921053       22223794  NM_001005465        OR10G3
8   chr14   21921053       22223794  NM_001005466        OR10G2
9   chr14   21921053       22223794  NM_001163380         RAB2B
10  chr14   21921053       22223794  NM_001303523          TOX4
11  chr14   21921053       22223794  NM_001317107         OR4E1
12  chr14   21921053       22223794     NM_019852        METTL3
14  chr14   21921053       22223794     NR_111966         SALL2
16  chr14   42229112       42477507  NM_001346175         LRFN5
17  chr21   30158796       30412158  NM_001320724        RWDD2B
18  chr21   30158796       30412158  NM_001320766          LTN1
19  chr21   30158796       30412158     NM_006447         USP16
20  chr21   30158796       30412158     NM_013240        N6AMT1
24   chr5  104148276      104561392     NR_000039       RAB9BP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72578415       72698704     NM_013381         TRHDE
1   chr12   72578415       72698704     NR_026836     TRHDE-AS1
3   chr15   21183305       21349681     NR_040094     LINC01193
4   chr16   18368568       18524577  NM_001004060         NOMO2
5   chr16   18368568       18524577  NM_001282511        NPIPA8
6   chr16   18368568       18524577     NR_036140     MIR3179-1
7   chr16   18368568       18524577     NR_036142     MIR3180-2
8   chr16   18368568       18524577     NR_036144     MIR3180-3
9   chr16   18368568       18524577     NR_037442     MIR3670-1
10  chr16   18368568       18524577     NR_103772  LOC100288162
11  chr16   18368568       18524577     NR_106971     MIR6511A4
12  chr16   18368568       18524577     NR_107060     MIR6770-2
13  chr18   24703021       25294176  NM_001256316         CHST9
14  chr18   24703021       25294176     NR_134589  LOC105372038
15   chr3   60450888       60705363  NM_001320899          FHIT
16   chr3   60450888       60705363     NR_128708      MIR548BB,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21816745       22000587  NM_001163380     RAB2B
1   chr14   21816745       22000587  NM_001170629      CHD8
2   chr14   21816745       22000587  NM_001303523      TOX4
3   chr14   21816745       22000587     NM_007192   SUPT16H
4   chr14   21816745       22000587     NM_019852    METTL3
5   chr14   21816745       22000587     NM_020366   RPGRIP1
8   chr14   21816745       22000587     NR_002916    SNORD8
9   chr14   21816745       22000587     NR_003029    SNORD9
10  chr14   21816745       22000587     NR_111966     SALL2
12  chr14   21789982       21903339  NM_001170629      CHD8
13  chr14   21789982       21903339     NM_007192   SUPT16H
14  chr14   21789982       21903339     NM_020366   RPGRIP1
16  chr14   21789982       21903339     NR_002916    SNORD8
17  chr14   21789982       21903339     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21932415       22155720  NM_001001912         OR4E2
1   chr14   21932415       22155720  NM_001005465        OR10G3
2   chr14   21932415       22155720  NM_001005466        OR10G2
3   chr14   21932415       22155720  NM_001163380         RAB2B
4   chr14   21932415       22155720  NM_001303523          TOX4
5   chr14   21932415       22155720  NM_001317107         OR4E1
6   chr14   21932415       22155720     NM_019852        METTL3
8   chr14   21932415       22155720     NR_111966         SALL2
10  chr14   38022932       38238022  NM_001310135          TTC6
11  chr14   38022932       38238022     NM_004496         FOXA1
12  chr16   68582227       68739545  NM_001305204         ZFP90
14  chr16   68582227       68739545  NM_001317195          CDH3
15   chr4  118809118      118968028     NM_004784         NDST3
16   chr7   93291276       93923750  NM_001317739          BET1
17   chr7   93291276       93923750     NM_004126         GNG11
18   chr7   93291276       93923750     NM_006528         TFPI2
19   chr7   93291276       93923750     NM_021955         GNGT1
20   chr7   93291276       93923750     NR_039796       MIR4652
22   chr7   93291276       93923750     NR_134235  LOC105375401,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143070988      143326838     NR_110761  LOC102723769
1  chr16   29478000       29584456     NR_002556     LOC388242
2  chr16   29478000       29584456     NR_135305        SMG1P2
4  chr21   22905181       23240723     NM_004540         NCAM2
5  chr21   22905181       23240723     NR_038872     LINC00317
6  chr21   22905181       23240723     NR_109958     LINC01425
7   chr7  157339160      157484626  NM_001308267        PTPRN2
9   chr7  157339160      157484626     NR_029689      MIR153-2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143684896      144439971  NM_001123068       PPIAL4G
1   chr1  143684896      144439971  NM_001135789       PPIAL4C
2   chr1  143684896      144439971  NM_001278267        NBPF20
3   chr1  143684896      144439971  NM_001287385        FAM72C
4   chr1  143684896      144439971  NM_001345942        FAM72D
8   chr1  143684896      144439971     NR_024511     LINC00623
10  chr1  143684896      144439971     NR_104014     LINC01138
11  chr1  143684896      144439971     NR_111930  LOC100132057
12  chr1  143684896      144439971     NR_111953     LINC00869
14  chr1  145132742      145276124  NM_001277444         NBPF9
15  chr1  145132742      145276124  NM_001278267        NBPF20
16  chr1  145132742      145276124     NM_203458      NOTCH2NL
17  chr2   52022690       52143635     NR_135237     LOC730100
18  chr2  242470409      242634495  NM_001164356         THAP4
19  chr2  242470409      242634495  NM_001165031         DTYMK
20  chr2  242470409      242634495  NM_001330161          ING5
22  chr2  242470409      242634495     NM_032515           BOK
23  chr2  242470409      242634495     NM_178326         ATG4B
24  chr2  242470409      242634495     NR_033346       BOK-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12830214       13096876  NM_001009611       PRAMEF4
1    chr1   12830214       13096876  NM_001010889       PRAMEF6
2    chr1   12830214       13096876  NM_001010890       PRAMEF9
3    chr1   12830214       13096876  NM_001012276       PRAMEF8
4    chr1   12830214       13096876  NM_001013631      HNRNPCL1
5    chr1   12830214       13096876  NM_001080830      PRAMEF12
6    chr1   12830214       13096876  NM_001099850      PRAMEF18
7    chr1   12830214       13096876  NM_001100631      PRAMEF22
8    chr1   12830214       13096876  NM_001146181      HNRNPCL3
9    chr1   12830214       13096876  NM_001146344      PRAMEF11
10   chr1   12830214       13096876  NM_001294139       PRAMEF1
11   chr1   12830214       13096876  NM_001302551      HNRNPCL4
12   chr1   12830214       13096876  NM_001306072      PRAMEF26
13   chr1   12830214       13096876  NM_001310134      PRAMEF25
15   chr1   12830214       13096876     NM_023014       PRAMEF2
16   chr1  144997804      145166889  NM_001198832       PDE4DIP
17   chr1  144997804      145166889  NM_001277444         NBPF9
18   chr1  144997804      145166889  NM_001278267        NBPF20
19   chr1  144997804      145166889     NM_004892        SEC22B
21  chr14   21841431       22078880  NM_001005465        OR10G3
22  chr14   21841431       22078880  NM_001163380         RAB2B
23  chr14   21841431       22078880  NM_001170629          CHD8
24  chr14   21841431       22078880  NM_001303523          TOX4
25  chr14   21841431       22078880     NM_007192       SUPT16H
26  chr14   21841431       22078880     NM_019852        METTL3
29  chr14   21841431       22078880     NR_002916        SNORD8
30  chr14   21841431       22078880     NR_003029        SNORD9
31  chr14   21841431       22078880     NR_111966         SALL2
33  chr15   77825576       77950397  NM_001301186        LINGO1
43  chr15   77825576       77950397     NR_045123    LINGO1-AS1
44  chr15   77825576       77950397     NR_135692  LOC101929457
45   chr4   69202908       69547515  NM_001031732        YTHDC1
46   chr4   69202908       69547515     NM_001076       UGT2B15
47   chr4   69202908       69547515     NM_001077       UGT2B17
48   chr4   69202908       69547515     NM_014058     TMPRSS11E,    chrom  cnv_start  cnv_terminate       tx_name      gene_name
0  chr16   29469004       29612621  NM_001014999          SLX1A
1  chr16   29469004       29612621  NM_001017390        SULT1A4
2  chr16   29469004       29612621     NR_002556      LOC388242
3  chr16   29469004       29612621     NR_037608  SLX1A-SULT1A3
4  chr16   29469004       29612621     NR_049833      MIR3680-2
5  chr16   29469004       29612621     NR_135305         SMG1P2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21920368       22095092  NM_001005465        OR10G3
1   chr14   21920368       22095092  NM_001163380         RAB2B
2   chr14   21920368       22095092  NM_001303523          TOX4
3   chr14   21920368       22095092     NM_019852        METTL3
5   chr14   21920368       22095092     NR_111966         SALL2
7   chr21   22369981       22921103     NM_004540         NCAM2
8   chr21   44857245       44984620     NM_007031        HSF2BP
9   chr21   44857245       44984620     NR_026863     LINC00313
10  chr21   44857245       44984620     NR_026960     LINC00319
11  chr21   44857245       44984620     NR_136540  LOC102724354
12   chr8  103992887      104423779  NM_001164615          FZD6
13   chr8  103992887      104423779  NM_001256099        CTHRC1
14   chr8  103992887      104423779     NM_001695      ATP6V1C1
16   chr8  103992887      104423779     NM_024812         BAALC
17   chr8  103992887      104423779     NM_030780      SLC25A32
19   chr8  103992887      104423779     NR_027071     BAALC-AS2
20   chr8  103992887      104423779     NR_036106       MIR3151
21   chr8  103992887      104423779     NR_109954     BAALC-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21871246       22126313  NM_001005465    OR10G3
1   chr14   21871246       22126313  NM_001005466    OR10G2
2   chr14   21871246       22126313  NM_001163380     RAB2B
3   chr14   21871246       22126313  NM_001170629      CHD8
4   chr14   21871246       22126313  NM_001303523      TOX4
5   chr14   21871246       22126313     NM_019852    METTL3
8   chr14   21871246       22126313     NR_111966     SALL2
10  chr21   22376904       22634349     NM_004540     NCAM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28713310       28879415     NR_033351       GOLGA8F
1   chr15   28713310       28879415     NR_033353       GOLGA8G
2   chr15   28713310       28879415     NR_039734     MIR4509-3
3   chr15   28812242       28952020  NM_001282468       GOLGA8M
4   chr15   28812242       28952020     NR_036443       HERC2P9
5   chr16   16396176       16643926  NM_001282511        NPIPA8
6   chr16   16396176       16643926     NR_036141     MIR3180-1
7   chr16   16396176       16643926     NR_036142     MIR3180-2
8   chr16   16396176       16643926     NR_036447        PKD1P1
9   chr16   16396176       16643926     NR_103772  LOC100288162
10  chr16   16396176       16643926     NR_106766     MIR6511A1
11  chr16   16396176       16643926     NR_106971     MIR6511A4
12  chr16   16396176       16643926     NR_107060     MIR6770-2
13  chr16   16396176       16643926     NR_128713     MIR3670-4
14   chr2   52191212       52327157     NR_135237     LOC730100,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   88922512       89037723  NM_001099338      NUTM2A
1   chr10   88922512       89037723  NM_001330112      FAM35A
3   chr10   88922512       89037723     NR_024397  NUTM2A-AS1
4   chr14   21901638       22157448  NM_001001912       OR4E2
5   chr14   21901638       22157448  NM_001005465      OR10G3
6   chr14   21901638       22157448  NM_001005466      OR10G2
7   chr14   21901638       22157448  NM_001163380       RAB2B
8   chr14   21901638       22157448  NM_001303523        TOX4
9   chr14   21901638       22157448  NM_001317107       OR4E1
10  chr14   21901638       22157448     NM_019852      METTL3
11  chr14   21901638       22157448     NM_020920        CHD8
13  chr14   21901638       22157448     NR_111966       SALL2
15   chr2  110147706      110463784  NM_001099289      SH3RF3
16   chr2  110147706      110463784  NM_001321504      SEPT10
18   chr2  110147706      110463784     NM_023016      SOWAHC
19   chr4   30696671       30907084  NM_001173523       PCDH7
22   chr8  143445889      143712880  NM_001291931     TSNARE1
23   chr8  143445889      143712880     NM_001702      ADGRB1
24   chr8  143445889      143712880     NM_015193         ARC,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21807935       21993303  NM_001163380         RAB2B
1   chr14   21807935       21993303  NM_001170629          CHD8
2   chr14   21807935       21993303  NM_001303523          TOX4
3   chr14   21807935       21993303     NM_007192       SUPT16H
4   chr14   21807935       21993303     NM_019852        METTL3
5   chr14   21807935       21993303     NM_020366       RPGRIP1
8   chr14   21807935       21993303     NR_002916        SNORD8
9   chr14   21807935       21993303     NR_003029        SNORD9
10  chr14   21807935       21993303     NR_111966         SALL2
12   chr2  150909131      151344257  NM_001254738          RND3
14   chr7  133257478      133570842     NM_021807         EXOC4
15   chr7  133257478      133570842     NR_120513  LOC101928861,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  190036708      190159871  NM_001317188        BRINP3
2   chr15   28672861       29343487  NM_001130414         APBA2
3   chr15   28672861       29343487  NM_001282468       GOLGA8M
4   chr15   28672861       29343487     NR_026589       WHAMMP2
5   chr15   28672861       29343487     NR_033351       GOLGA8F
6   chr15   28672861       29343487     NR_033353       GOLGA8G
7   chr15   28672861       29343487     NR_036443       HERC2P9
8   chr15   28672861       29343487     NR_036475  LOC100289656
9   chr15   28672861       29343487     NR_037599     PDCD6IPP2
10  chr15   28672861       29343487     NR_039734     MIR4509-3
11  chr15   28672861       29343487     NR_047567     GOLGA6L7P
12  chr16   18088529       18730571  NM_001004060         NOMO2
13  chr16   18088529       18730571  NM_001282511        NPIPA8
14  chr16   18088529       18730571     NR_003569       ABCC6P1
15  chr16   18088529       18730571     NR_036140     MIR3179-1
16  chr16   18088529       18730571     NR_036142     MIR3180-2
17  chr16   18088529       18730571     NR_036144     MIR3180-3
18  chr16   18088529       18730571     NR_037442     MIR3670-1
19  chr16   18088529       18730571     NR_103772  LOC100288162
20  chr16   18088529       18730571     NR_106971     MIR6511A4
21  chr16   18088529       18730571     NR_107060     MIR6770-2
22  chr17   56183188       56286662     NM_000502           EPX
23  chr17   56183188       56286662  NM_001004707         OR4D2
24  chr17   56183188       56286662  NM_001165927          MKS1
26  chr17   56183188       56286662     NM_012374         OR4D1
27  chr17   56183188       56286662     NR_002307        MSX2P1
28  chr20   40619204       40785386     NM_133170         PTPRT
29   chr9   41931448       42314238     NR_003670        FGF7P3
30   chr9   41931448       42314238     NR_015363         GLIDR
33   chr9   41931448       42314238     NR_126048  LOC102724238
34   chr9   41931448       42314238     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18301295       18463593  NM_001282511        NPIPA8
1   chr16   18301295       18463593     NR_103772  LOC100288162
2   chr16   18301295       18463593     NR_106971     MIR6511A4
3   chr17   14049180       14265255  NM_001007530        CDRT15
4   chr17   14049180       14265255     NM_001303         COX10
5   chr17   14049180       14265255     NM_006041      HS3ST3B1
6   chr17   14049180       14265255     NR_026880      MGC12916
7   chr20   14899784       15766669  NM_001033087       MACROD2
9   chr20   14899784       15766669     NR_037841   MACROD2-AS1
11   chr8    3958193        4090605     NM_033225         CSMD1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   14749050       15360161  NM_001270767          NTAN1
1   chr16   14749050       15360161  NM_001277323         NPIPA3
3   chr16   14749050       15360161  NM_001277324         NPIPA2
5   chr16   14749050       15360161  NM_001285445         PDXDC1
10  chr16   14749050       15360161  NM_001301064           RRN3
12  chr16   14749050       15360161     NM_006985         NPIPA1
13  chr16   14749050       15360161     NM_014287          NOMO1
14  chr16   14749050       15360161     NM_016561           BFAR
15  chr16   14749050       15360161     NR_023387        ABCC6P2
16  chr16   14749050       15360161     NR_036140      MIR3179-1
17  chr16   14749050       15360161     NR_036141      MIR3180-1
18  chr16   14749050       15360161     NR_036142      MIR3180-2
19  chr16   14749050       15360161     NR_037466      MIR3180-4
20  chr16   14749050       15360161     NR_103772   LOC100288162
21  chr16   14749050       15360161     NR_106775      MIR6511B1
22  chr16   14749050       15360161     NR_106965      MIR6511B2
23  chr16   14749050       15360161     NR_106970      MIR6511A3
24  chr16   14749050       15360161     NR_107060      MIR6770-2
25  chr16   14749050       15360161     NR_123721  PKD1P6-NPIPP1
27  chr16   14749050       15360161     NR_125434   LOC100505915
28  chr16   14749050       15360161     NR_128713      MIR3670-4
29  chr16   14749050       15360161     NR_133651        PLA2G10
30  chr20   14844922       15116053     NM_080676        MACROD2
31  chr20   14844922       15116053     NR_037841    MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  187145248      187326503     NR_126347  LINC01036
1   chr13   46960734       47082414  NM_001286761     RUBCNL
3   chr13   46960734       47082414     NR_120426  LINC01198
4   chr14   21767647       21925601  NM_001170629       CHD8
5   chr14   21767647       21925601     NM_007192    SUPT16H
6   chr14   21767647       21925601     NM_020366    RPGRIP1
8   chr14   21767647       21925601     NR_002916     SNORD8
9   chr14   21767647       21925601     NR_003029     SNORD9
10   chr9   39037414       39229986     NM_033655    CNTNAP3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21872361       22004688  NM_001163380     RAB2B
1  chr14   21872361       22004688  NM_001170629      CHD8
2  chr14   21872361       22004688  NM_001303523      TOX4
3  chr14   21872361       22004688     NM_019852    METTL3
6  chr14   21872361       22004688     NR_111966     SALL2
8  chr20    8049117        8185626     NM_015192     PLCB1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   21919170       23344436  NM_001001912          OR4E2
1   chr14   21919170       23344436  NM_001005465         OR10G3
2   chr14   21919170       23344436  NM_001005466         OR10G2
3   chr14   21919170       23344436  NM_001126105         SLC7A7
5   chr14   21919170       23344436  NM_001163380          RAB2B
6   chr14   21919170       23344436  NM_001303523           TOX4
7   chr14   21919170       23344436  NM_001317107          OR4E1
8   chr14   21919170       23344436  NM_001318870         MRPL52
9   chr14   21919170       23344436  NM_001329226          LRP10
10  chr14   21919170       23344436     NM_001344           DAD1
11  chr14   21919170       23344436     NM_004995          MMP14
12  chr14   21919170       23344436     NM_005015          OXA1L
13  chr14   21919170       23344436     NM_019852         METTL3
14  chr14   21919170       23344436     NM_022060          ABHD4
17  chr14   21919170       23344436     NR_111966          SALL2
19  chr17    3324702        3628137     NM_000049           ASPA
20  chr17    3324702        3628137  NM_001014764           EMC6
22  chr17    3324702        3628137  NM_001170696        SPATA22
26  chr17    3324702        3628137  NM_001204698        TAX1BP3
28  chr17    3324702        3628137     NM_002208          ITGAE
29  chr17    3324702        3628137     NM_003554          OR1E2
30  chr17    3324702        3628137     NM_004937           CTNS
31  chr17    3324702        3628137     NM_012373          OR3A3
32  chr17    3324702        3628137     NM_013276           SHPK
33  chr17    3324702        3628137     NM_018727          TRPV1
34  chr17    3324702        3628137     NM_031965           GSG2
39  chr17    3324702        3628137     NM_145068          TRPV3
40  chr17    3324702        3628137     NM_175080          P2RX5
41  chr17    3324702        3628137     NR_037928  P2RX5-TAX1BP3
42  chr20   14673145       14796487     NM_080676        MACROD2
43   chr6   65551359       65686679  NM_001142800            EYS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   31209251       31355038     NM_181807         DCDC1
1   chr14   67432862       67562653     NM_020806          GPHN
2   chr16   18343584       18454453  NM_001282511        NPIPA8
3   chr16   18343584       18454453     NR_103772  LOC100288162
4   chr16   18343584       18454453     NR_106971     MIR6511A4
5   chr19   33719493       33836974  NM_001285829         CEBPA
6   chr19   33719493       33836974     NR_026887     CEBPA-AS1
7   chr20   14818004       15391666  NM_001033087       MACROD2
9   chr20   14818004       15391666     NR_037841   MACROD2-AS1
11   chr7   21362508       21624611  NM_001277115        DNAH11
12   chr7   21362508       21624611  NM_001326542           SP4
13   chr7   21362508       21624611     NR_031594       MIR1183,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21555912       22967108  NM_001077180        METTL9
1   chr16   21555912       22967108  NM_001135865        NPIPB5
2   chr16   21555912       22967108  NM_001161683          OTOA
3   chr16   21555912       22967108  NM_001164579      C16orf52
4   chr16   21555912       22967108  NM_001258033        POLR3E
6   chr16   21555912       22967108  NM_001310148        NPIPB4
7   chr16   21555912       22967108     NM_001802          CDR2
8   chr16   21555912       22967108     NM_003366        UQCRC2
9   chr16   21555912       22967108     NM_005849         IGSF6
10  chr16   21555912       22967108     NM_006043        HS3ST2
11  chr16   21555912       22967108     NM_013302         EEF2K
14  chr16   21555912       22967108     NM_173615         VWA3A
15  chr16   21555912       22967108     NM_173806         PDZD9
16  chr16   21555912       22967108     NR_003370        RRN3P1
17  chr16   21555912       22967108     NR_003676     LOC653786
18  chr16   21555912       22967108     NR_027154        SMG1P1
19  chr16   21555912       22967108     NR_027460        RRN3P3
20  chr16   21555912       22967108     NR_110930  LOC101927814
21  chr16   21555912       22967108     NR_136333       MFSD13B
22  chr22   17258555       17854234  NM_001037814          GAB4
23  chr22   17258555       17854234  NM_001163079         CECR6
24  chr22   17258555       17854234  NM_001282227         CECR1
26  chr22   17258555       17854234  NM_001289905        IL17RA
27  chr22   17258555       17854234  NM_001290046         CECR2
28  chr22   17258555       17854234     NM_017829         CECR5
31  chr22   17258555       17854234     NM_175878          XKR3
33  chr22   17258555       17854234     NR_003607       HSFY1P1
34  chr22   17258555       17854234     NR_015352         CECR7
35  chr22   17258555       17854234     NR_024482     CECR5-AS1
36  chr22   17258555       17854234     NR_038398         CECR3
37  chr22   17258555       17854234     NR_103793  LOC100996342
38   chr6  136792723      137161982     NM_000288          PEX7
39   chr6  136792723      137161982  NM_001198608          MAP7
43   chr6  136792723      137161982     NM_005923        MAP3K5
44   chr6  136792723      137161982     NR_125858  LOC101928461
45   chr6  136792723      137161982     NR_134635  LOC101928429,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143695720      144562605  NM_001123068       PPIAL4G
1    chr1  143695720      144562605  NM_001135789       PPIAL4C
2    chr1  143695720      144562605  NM_001278267        NBPF20
3    chr1  143695720      144562605  NM_001287385        FAM72C
4    chr1  143695720      144562605  NM_001345942        FAM72D
8    chr1  143695720      144562605     NR_024511     LINC00623
10   chr1  143695720      144562605     NR_104014     LINC01138
11   chr1  143695720      144562605     NR_111930  LOC100132057
12   chr1  143695720      144562605     NR_111953     LINC00869
14  chr10   81490500       81641141     NR_029407     LOC642361
15  chr10   81490500       81641141     NR_120611    NUTM2B-AS1
18  chr16   22235281       22337508  NM_001258033        POLR3E
19  chr16   22235281       22337508     NM_013302         EEF2K
20  chr21   30855902       31072035     NM_000830         GRIK1
24  chr21   30855902       31072035     NR_033368     GRIK1-AS2
25   chr6  155481837      155764808  NM_001001346        CLDN20
26   chr6  155481837      155764808  NM_001010927         TIAM2
28   chr6  155481837      155764808     NM_015718          NOX3
29   chr6  155481837      155764808     NM_016020         TFB1M
30   chr7  110636256      110760202  NM_001099658         LRRN3
31   chr7  110636256      110760202  NM_001244606        IMMP2L
33   chr9  101919249      103079742  NM_001161584         TEX10
34   chr9  101919249      103079742  NM_001318381          INVS
35   chr9  101919249      103079742     NM_006808        SEC61B
36   chr9  101919249      103079742     NM_015051         ERP44
38   chr9  101919249      103079742     NM_017919         STX17
39   chr9  101919249      103079742     NM_033087          ALG2
40   chr9  101919249      103079742     NM_173199         NR4A3
42   chr9  101919249      103079742     NR_038853     STX17-AS1
43   chr9  101919249      103079742     NR_102270          NAMA
44   chr9  101919249      103079742     NR_109802  LOC101928438,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr10   68021210       68212489  NM_001127384             CTNNA3
2   chr11   81763518       81909039     NR_120571          MIR4300HG
3   chr16   18428340       18559308  NM_001004060              NOMO2
4   chr16   18428340       18559308     NR_036140          MIR3179-1
5   chr16   18428340       18559308     NR_036142          MIR3180-2
6   chr16   18428340       18559308     NR_036144          MIR3180-3
7   chr16   18428340       18559308     NR_037442          MIR3670-1
8   chr16   18428340       18559308     NR_103772       LOC100288162
9   chr16   18428340       18559308     NR_106971          MIR6511A4
10  chr16   18428340       18559308     NR_107060          MIR6770-2
11   chr2   35461985       36132474     NR_039629           MIR548AD
12   chr2  108754990      108973465  NM_001008743            SULT1C3
13   chr2  108754990      108973465     NM_001056            SULT1C2
15   chr2  108754990      108973465     NR_037191          SULT1C2P1
16   chr2  108754990      108973465     NR_131251          LINC01594
17  chr22   17152530       17279325     NM_175878               XKR3
18  chr22   17152530       17279325     NR_040115  ANKRD62P1-PARP4P3
19  chr22   17152530       17279325     NR_134584       LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0    chr1  245027464      245232682  NM_001143943          EFCAB2
2    chr1  245027464      245232682     NM_004501          HNRNPU
4    chr1  245027464      245232682     NR_111907    LOC101928068
5   chr14   21774035       21915614  NM_001170629            CHD8
6   chr14   21774035       21915614     NM_007192         SUPT16H
7   chr14   21774035       21915614     NM_020366         RPGRIP1
9   chr14   21774035       21915614     NR_002916          SNORD8
10  chr14   21774035       21915614     NR_003029          SNORD9
11  chr15   30295506       30627529  NM_001282472         GOLGA8J
12  chr15   30295506       30627529     NR_026771    DKFZP434L187
13  chr15   30295506       30627529     NR_026859          ULK4P3
14  chr15   30295506       30627529     NR_033933         GOLGA8T
15  chr15   43956588       44089464  NM_001018108           SERF2
19  chr15   43956588       44089464  NM_001258031         SERINC4
20  chr15   43956588       44089464  NM_001321927          CKMT1A
23  chr15   43956588       44089464     NM_005313           PDIA3
24  chr15   43956588       44089464     NM_025165            ELL3
25  chr15   43956588       44089464     NR_002318      CATSPER2P1
26  chr15   43956588       44089464     NR_031695         MIR1282
27  chr15   43956588       44089464     NR_037673  SERF2-C15ORF63
29   chr9   28507121       28643630  NM_001258282          LINGO2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr10   96506304       96633315     NM_000769      CYP2C19
1  chr20   14640989       14754867     NM_080676      MACROD2
2  chr20   14700053       14875869     NM_080676      MACROD2
3  chr20   14700053       14875869     NR_037841  MACROD2-AS1
4   chr6   20877924       20984097     NM_017774       CDKAL1
5   chr7  117511357      117654825     NM_033427      CTTNBP2
6   chr9   38965647       39695843  NM_001085452    SPATA31A1
7   chr9   38965647       39695843     NM_033655      CNTNAP3
8   chr9   38965647       39695843     NR_003528      ZNF658B
9   chr9   38965647       39695843     NR_026803      FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12   80989794       81154381  NM_001145026     PTPRQ
1   chr12   80989794       81154381     NM_002469      MYF6
2   chr12   80989794       81154381     NM_005593      MYF5
3   chr14   21782715       22061354  NM_001005465    OR10G3
4   chr14   21782715       22061354  NM_001163380     RAB2B
5   chr14   21782715       22061354  NM_001170629      CHD8
6   chr14   21782715       22061354  NM_001303523      TOX4
7   chr14   21782715       22061354     NM_007192   SUPT16H
8   chr14   21782715       22061354     NM_019852    METTL3
9   chr14   21782715       22061354     NM_020366   RPGRIP1
12  chr14   21782715       22061354     NR_002916    SNORD8
13  chr14   21782715       22061354     NR_003029    SNORD9
14  chr14   21782715       22061354     NR_111966     SALL2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   18450838       18604043  NM_001004060      NOMO2
1  chr16   18450838       18604043     NR_003569    ABCC6P1
2  chr16   18450838       18604043     NR_036140  MIR3179-1
3  chr16   18450838       18604043     NR_036142  MIR3180-2
4  chr16   18450838       18604043     NR_036144  MIR3180-3
5  chr16   18450838       18604043     NR_037442  MIR3670-1
6  chr16   18450838       18604043     NR_107060  MIR6770-2
7  chr16   76260603       76369835  NM_001322181    CNTNAP4
9   chr6  162707690      162867626     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144668318      145043659  NM_001002810       PDE4DIP
7    chr1  144668318      145043659  NM_001277444         NBPF9
8    chr1  144668318      145043659  NM_001278267        NBPF20
10   chr1  144668318      145043659     NR_102405         NBPF8
11  chr11    4245738        4427822  NM_001005161        OR52B4
12  chr11    4245738        4427822     NM_003141        TRIM21
13  chr14   21806565       21932110  NM_001163380         RAB2B
14  chr14   21806565       21932110  NM_001170629          CHD8
15  chr14   21806565       21932110     NM_007192       SUPT16H
16  chr14   21806565       21932110     NM_020366       RPGRIP1
19  chr14   21806565       21932110     NR_002916        SNORD8
20  chr14   21806565       21932110     NR_003029        SNORD9
21  chr20   41046772       41368628     NM_133170         PTPRT
22  chr20   41046772       41368628     NR_110004  LOC101927159,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12846827       12952517  NM_001009611       PRAMEF4
1    chr1   12846827       12952517  NM_001013631      HNRNPCL1
2    chr1   12846827       12952517  NM_001146181      HNRNPCL3
3    chr1   12846827       12952517  NM_001146344      PRAMEF11
4    chr1   12846827       12952517  NM_001294139       PRAMEF1
5    chr1   12846827       12952517  NM_001302551      HNRNPCL4
7    chr1   12846827       12952517     NM_023014       PRAMEF2
8   chr10   68017423       68131802  NM_001127384        CTNNA3
10  chr16   21419243       21653634  NM_001077180        METTL9
12  chr16   21419243       21653634     NM_005849         IGSF6
13  chr16   21419243       21653634     NM_130464        NPIPB3
14  chr16   21419243       21653634     NR_002594      SLC7A5P2
15  chr16   21419243       21653634     NR_024456  LOC100190986
16  chr16   21419243       21653634     NR_027155        SMG1P3
17  chr16   21419243       21653634     NR_049833     MIR3680-2
18  chr16   21419243       21653634     NR_110930  LOC101927814
19  chr20   14757990       14916185     NM_080676       MACROD2
20  chr20   14757990       14916185     NR_037841   MACROD2-AS1
22  chr20   14743993       14872646     NM_080676       MACROD2
23  chr20   14743993       14872646     NR_037841   MACROD2-AS1
24  chr20   41056037       41279946     NM_133170         PTPRT
25   chr7  110708961      110820473  NM_001099658         LRRN3
26   chr7  110708961      110820473  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143666060      143899923  NM_001123068       PPIAL4G
1    chr1  143666060      143899923  NM_001287385        FAM72C
2    chr1  143666060      143899923  NM_001345942        FAM72D
5    chr1  143666060      143899923     NR_104014     LINC01138
6    chr1  143666060      143899923     NR_106967       MIR6077
7    chr1  143666060      143899923     NR_111930  LOC100132057
9   chr13   67236054       67460972     NM_020403         PCDH9
10  chr13   67236054       67460972     NR_046527     PCDH9-AS2
11  chr15   28215079       29013973     NM_000275          OCA2
12  chr15   28215079       29013973  NM_001282468       GOLGA8M
14  chr15   28215079       29013973     NM_004667         HERC2
15  chr15   28215079       29013973     NR_026589       WHAMMP2
16  chr15   28215079       29013973     NR_033351       GOLGA8F
18  chr15   28215079       29013973     NR_033353       GOLGA8G
20  chr15   28215079       29013973     NR_036443       HERC2P9
21  chr15   28215079       29013973     NR_039734     MIR4509-3
23   chr2   52156811       52277191     NR_135237     LOC730100,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18109970       18775791  NM_001004060         NOMO2
1   chr16   18109970       18775791  NM_001282511        NPIPA8
2   chr16   18109970       18775791     NR_003569       ABCC6P1
3   chr16   18109970       18775791     NR_036140     MIR3179-1
4   chr16   18109970       18775791     NR_036142     MIR3180-2
5   chr16   18109970       18775791     NR_036144     MIR3180-3
6   chr16   18109970       18775791     NR_037442     MIR3670-1
7   chr16   18109970       18775791     NR_103772  LOC100288162
8   chr16   18109970       18775791     NR_106971     MIR6511A4
9   chr16   18109970       18775791     NR_107060     MIR6770-2
10  chr22   17245508       17384686     NM_175878          XKR3
11  chr22   17245508       17384686     NR_003607       HSFY1P1
12   chr3     674716         810661     NR_110118     LINC01266
13   chr4   91192121       92264380  NM_001145065        CCSER1
15   chr7    8707437        8813610     NM_152745         NXPH1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21833280       22119448  NM_001005465    OR10G3
1   chr14   21833280       22119448  NM_001005466    OR10G2
2   chr14   21833280       22119448  NM_001163380     RAB2B
3   chr14   21833280       22119448  NM_001170629      CHD8
4   chr14   21833280       22119448  NM_001303523      TOX4
5   chr14   21833280       22119448     NM_007192   SUPT16H
6   chr14   21833280       22119448     NM_019852    METTL3
9   chr14   21833280       22119448     NR_002916    SNORD8
10  chr14   21833280       22119448     NR_003029    SNORD9
11  chr14   21833280       22119448     NR_111966     SALL2
13   chr4    3868672        4045696     NR_130741   FAM86EP
14   chr9   38984852       39113571     NM_033655   CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145269003      145422856  NM_001277444         NBPF9
1    chr1  145269003      145422856  NM_001278267        NBPF20
2    chr1  145269003      145422856  NM_001302371        NBPF10
3    chr1  145269003      145422856     NM_145277          HFE2
4    chr1  145269003      145422856     NM_203458      NOTCH2NL
5    chr1  145269003      145422856     NR_104217       NBPF25P
6    chr1  145269003      145422856     NR_125967  LOC101928979
7    chr2   78168611       78288991     NR_024342        SNAR-H
8    chr2   78168611       78288991     NR_110288  LOC101927967
9    chr2  186584654      186716101     NM_173651         FSIP2
10   chr2  186584654      186716101     NR_110214  LOC101927196
13   chr2  186584654      186716101     NR_144453     FSIP2-AS1
15  chr20   14781877       14968748     NM_080676       MACROD2
16  chr20   14781877       14968748     NR_037841   MACROD2-AS1
18   chr7   63978413       66456549     NM_000048           ASL
19   chr7   63978413       66456549     NM_000181          GUSB
20   chr7   63978413       66456549  NM_001007253        ERV3-1
22   chr7   63978413       66456549  NM_001130022        ZNF680
23   chr7   63978413       66456549  NM_001160183        ZNF138
24   chr7   63978413       66456549  NM_001167961         KCTD7
25   chr7   63978413       66456549  NM_001282360        ZNF107
26   chr7   63978413       66456549  NM_001287060       RABGEF1
29   chr7   63978413       66456549  NM_001287532         ZNF92
31   chr7   63978413       66456549     NM_003596         TPST1
32   chr7   63978413       66456549     NM_015852        ZNF117
33   chr7   63978413       66456549     NM_016038          SBDS
34   chr7   63978413       66456549     NM_017994       TMEM248
35   chr7   63978413       66456549     NM_021148        ZNF273
36   chr7   63978413       66456549     NM_173517      VKORC1L1
38   chr7   63978413       66456549     NR_002961       SNORA22
39   chr7   63978413       66456549     NR_003110        CCT6P1
40   chr7   63978413       66456549     NR_003934    GTF2IRD1P1
41   chr7   63978413       66456549     NR_024548          CRCP
42   chr7   63978413       66456549     NR_026873     LINC00174
43   chr7   63978413       66456549     NR_027392       INTS4P2
44   chr7   63978413       66456549     NR_033245     LOC641746
45   chr7   63978413       66456549     NR_033416        CCT6P3
46   chr7   63978413       66456549     NR_038378     LOC441242
48   chr7   63978413       66456549     NR_077227  LOC100128885
52   chr7   63978413       66456549     NR_106898       MIR6839
53   chr7   63978413       66456549     NR_110037  LOC100996437
54   chr7   63978413       66456549     NR_111972  GS1-124K5.11
56   chr7   63978413       66456549     NR_134570   GS1-124K5.4
58   chr7   63978413       66456549     NR_135738      GTF2IP23
59   chr7   63978413       66456549     NR_136637     LOC644794,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21920646       22123242  NM_001005465        OR10G3
1   chr14   21920646       22123242  NM_001005466        OR10G2
2   chr14   21920646       22123242  NM_001163380         RAB2B
3   chr14   21920646       22123242  NM_001303523          TOX4
4   chr14   21920646       22123242     NM_019852        METTL3
6   chr14   21920646       22123242     NR_111966         SALL2
8   chr16   29672039       29799771  NM_001030288           SPN
9   chr16   29672039       29799771  NM_001318249          QPRT
11  chr16   29672039       29799771     NM_152338          ZG16
12  chr16   29672039       29799771     NM_175900      C16orf54
13  chr18   24570717       24677513  NM_001256316         CHST9
14   chr6   90290613       90527357  NM_001242809        ANKRD6
17   chr6   90290613       90527357     NM_014611          MDN1
18   chr6   90290613       90527357     NM_020466         LYRM2
20   chr6   90290613       90527357     NR_111915  LOC101929057
21   chr7   80190746       80334155     NM_000072          CD36
29   chr9   28495107       28823274  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68035046       68255603  NM_001127384        CTNNA3
2   chr12   72712018       72855051     NM_013381         TRHDE
3   chr14   27031059       27134533     NM_002515         NOVA1
5   chr15   28718538       29152822  NM_001282468       GOLGA8M
6   chr15   28718538       29152822     NR_026589       WHAMMP2
7   chr15   28718538       29152822     NR_033351       GOLGA8F
8   chr15   28718538       29152822     NR_033353       GOLGA8G
9   chr15   28718538       29152822     NR_036443       HERC2P9
10  chr15   28718538       29152822     NR_036475  LOC100289656
11  chr15   28718538       29152822     NR_037599     PDCD6IPP2
12  chr15   28718538       29152822     NR_039734     MIR4509-3
13  chr15   28718538       29152822     NR_047567     GOLGA6L7P
14  chr16   76276361       76396650  NM_001322181       CNTNAP4
16   chr3  172094531      172229770  NM_001135095        FNDC3B
17   chr3  172094531      172229770  NM_001190942       TNFSF10
18   chr3  172094531      172229770     NM_004122          GHSR
21   chr7    6806677        6964288  NM_001099697      RSPH10B2
22   chr7    6806677        6964288     NM_198097         CCZ1B,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1   12842049       13096147  NM_001009611        PRAMEF4
1    chr1   12842049       13096147  NM_001010889        PRAMEF6
2    chr1   12842049       13096147  NM_001010890        PRAMEF9
3    chr1   12842049       13096147  NM_001012276        PRAMEF8
4    chr1   12842049       13096147  NM_001013631       HNRNPCL1
5    chr1   12842049       13096147  NM_001099850       PRAMEF18
6    chr1   12842049       13096147  NM_001100631       PRAMEF22
7    chr1   12842049       13096147  NM_001146181       HNRNPCL3
8    chr1   12842049       13096147  NM_001146344       PRAMEF11
9    chr1   12842049       13096147  NM_001294139        PRAMEF1
10   chr1   12842049       13096147  NM_001302551       HNRNPCL4
11   chr1   12842049       13096147  NM_001306072       PRAMEF26
12   chr1   12842049       13096147  NM_001310134       PRAMEF25
14   chr1   12842049       13096147     NM_023014        PRAMEF2
15  chr10   68023062       68295501  NM_001127384         CTNNA3
17  chr16   15116653       15327550  NM_001270767          NTAN1
18  chr16   15116653       15327550  NM_001285445         PDXDC1
23  chr16   15116653       15327550  NM_001301064           RRN3
25  chr16   15116653       15327550     NR_037466      MIR3180-4
26  chr16   15116653       15327550     NR_106775      MIR6511B1
27  chr16   15116653       15327550     NR_106965      MIR6511B2
28  chr16   15116653       15327550     NR_123721  PKD1P6-NPIPP1
30  chr16   15116653       15327550     NR_125434   LOC100505915
31  chr17   47888349       48234018  NM_001077503           TAC4
32  chr17   47888349       48234018  NM_001199158           KAT7
33  chr17   47888349       48234018  NM_001199898           PDK2
36  chr17   47888349       48234018  NM_001242791       FLJ45513
37  chr17   47888349       48234018  NM_001257359         SAMD14
38  chr17   47888349       48234018     NM_001934           DLX4
39  chr17   47888349       48234018     NM_002204          ITGA3
..    ...        ...            ...           ...            ...
48   chr3   41297127       43824796     NM_000729            CCK
49   chr3   41297127       43824796  NM_001042646          TRAK1
50   chr3   41297127       43824796  NM_001099668         HIGD1A
52   chr3   41297127       43824796  NM_001129908        FAM198A
53   chr3   41297127       43824796  NM_001134656         ZNF662
55   chr3   41297127       43824796  NM_001201572         SEC22C
57   chr3   41297127       43824796  NM_001204834          ANO10
58   chr3   41297127       43824796  NM_001205272         KRBOX1
59   chr3   41297127       43824796  NM_001251882          VIPR1
64   chr3   41297127       43824796     NM_001296          ACKR2
65   chr3   41297127       43824796  NM_001304386          LYZL4
66   chr3   41297127       43824796  NM_001322500           ULK4
69   chr3   41297127       43824796     NM_004391         CYP8B1
70   chr3   41297127       43824796     NM_005385           NKTR
72   chr3   41297127       43824796     NM_016006          ABHD5
73   chr3   41297127       43824796     NM_016305         SS18L2
74   chr3   41297127       43824796     NM_017719           SNRK
76   chr3   41297127       43824796     NM_020707          HHATL
77   chr3   41297127       43824796     NM_032806        POMGNT2
78   chr3   41297127       43824796     NM_144719         CCDC13
79   chr3   41297127       43824796     NM_145166         ZBTB47
80   chr3   41297127       43824796     NM_152393         KLHL40
83   chr3   41297127       43824796     NR_046654      VIPR1-AS1
84   chr3   41297127       43824796     NR_046732     CCDC13-AS1
85   chr3   41297127       43824796     NR_046757       SNRK-AS1
86   chr3   41297127       43824796     NR_122033     KRBOX1-AS1
87   chr3   41297127       43824796     NR_122070      LOC729083
88   chr3   41297127       43824796     NR_125400   LOC101928323
89   chr4   75387497       75501147     NM_001657           AREG
90   chr9   14990483       15113412     NR_003920      LOC389705

[65 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21942342       22224561  NM_001001912        OR4E2
1   chr14   21942342       22224561  NM_001005465       OR10G3
2   chr14   21942342       22224561  NM_001005466       OR10G2
3   chr14   21942342       22224561  NM_001163380        RAB2B
4   chr14   21942342       22224561  NM_001303523         TOX4
5   chr14   21942342       22224561  NM_001317107        OR4E1
6   chr14   21942342       22224561     NM_019852       METTL3
8   chr14   21942342       22224561     NR_111966        SALL2
10  chr20   14768013       14922626     NM_080676      MACROD2
11  chr20   14768013       14922626     NR_037841  MACROD2-AS1
13   chr4   94079289       94650583     NM_001510        GRID2
14   chr4  169179616      169352356  NM_001012967       DDX60L
16   chr4  169179616      169352356     NM_017631        DDX60
17   chr6  162721906      162844835     NM_013988        PARK2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21813422       21921319  NM_001170629      CHD8
1  chr14   21813422       21921319     NM_007192   SUPT16H
2  chr14   21813422       21921319     NM_020366   RPGRIP1
4  chr14   21813422       21921319     NR_002916    SNORD8
5  chr14   21813422       21921319     NR_003029    SNORD9
6   chr4   98908057       99062065     NM_174952     STPG2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81467545       81619025  NM_001278495      NUTM2B
1   chr10   81467545       81619025     NR_029407   LOC642361
2   chr10   81467545       81619025     NR_120611  NUTM2B-AS1
5    chr2  242420555      242533091  NM_001164356       THAP4
6    chr2  242420555      242533091  NM_001271978       STK25
9    chr2  242420555      242533091     NM_014808       FARP2
11   chr2  242420555      242533091     NM_032515         BOK
12   chr2  242420555      242533091     NR_033346     BOK-AS1
13  chr22   19021827       19176072  NM_001184781       DGCR2
14  chr22   19021827       19176072  NM_001256534     SLC25A1
15  chr22   19021827       19176072     NM_001835      CLTCL1
16  chr22   19021827       19176072     NM_005315        GSC2
18  chr22   19021827       19176072     NM_022719      DGCR14
19  chr22   19021827       19176072     NM_053006       TSSK2
20  chr22   19021827       19176072     NR_024157      DGCR11
21  chr22   19021827       19176072     NR_103767   LINC01311,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68043488       68677642  NM_001127384        CTNNA3
2   chr10   68043488       68677642     NR_111911  LOC101928961
3   chr14   21763786       23610180  NM_001001912         OR4E2
4   chr14   21763786       23610180  NM_001005465        OR10G3
5   chr14   21763786       23610180  NM_001005466        OR10G2
6   chr14   21763786       23610180  NM_001039619         PRMT5
7   chr14   21763786       23610180  NM_001099780        PSMB11
8   chr14   21763786       23610180  NM_001126105        SLC7A7
10  chr14   21763786       23610180  NM_001130706      C14orf93
11  chr14   21763786       23610180  NM_001130725         PSMB5
13  chr14   21763786       23610180  NM_001163380         RAB2B
14  chr14   21763786       23610180  NM_001164815         ACIN1
16  chr14   21763786       23610180  NM_001170629          CHD8
17  chr14   21763786       23610180  NM_001267036        SLC7A8
20  chr14   21763786       23610180  NM_001289097         AJUBA
21  chr14   21763786       23610180  NM_001303523          TOX4
22  chr14   21763786       23610180  NM_001317107         OR4E1
23  chr14   21763786       23610180  NM_001318870        MRPL52
24  chr14   21763786       23610180  NM_001329226         LRP10
25  chr14   21763786       23610180     NM_001344          DAD1
26  chr14   21763786       23610180     NM_001805         CEBPE
27  chr14   21763786       23610180     NM_004995         MMP14
28  chr14   21763786       23610180     NM_005015         OXA1L
29  chr14   21763786       23610180     NM_007192       SUPT16H
31  chr14   21763786       23610180     NM_017815         HAUS4
32  chr14   21763786       23610180     NM_017924     C14orf119
33  chr14   21763786       23610180     NM_018107         RBM23
34  chr14   21763786       23610180     NM_019852        METTL3
35  chr14   21763786       23610180     NM_020366       RPGRIP1
37  chr14   21763786       23610180     NM_022060         ABHD4
38  chr14   21763786       23610180     NM_022478         CDH24
41  chr14   21763786       23610180     NM_173527          REM2
43  chr14   21763786       23610180     NR_002916        SNORD8
44  chr14   21763786       23610180     NR_003029        SNORD9
45  chr14   21763786       23610180     NR_039856       MIR4707
47  chr14   21763786       23610180     NR_110002  LOC101926933
48  chr14   21763786       23610180     NR_111966         SALL2
50  chr14   21763786       23610180     NR_120599     PRMT5-AS1
51   chr5  109806419      111042476  NM_001039763       TMEM232
52   chr5  109806419      111042476  NM_001303250      SLC25A46
53   chr5  109806419      111042476  NM_001308058        STARD4
54   chr5  109806419      111042476  NM_001323374         CAMK4
58   chr5  109806419      111042476     NM_033035          TSLP
62   chr5  109806419      111042476     NM_139281         WDR36
63   chr5  109806419      111042476     NR_031644      MIR548F3
64   chr5  109806419      111042476     NR_040093    STARD4-AS1
66   chr7   75838406       76127125  NM_001102594          DTX2
68   chr7   75838406       76127125  NM_001110199         SRRM3
69   chr7   75838406       76127125  NM_001110354           ZP3
70   chr7   75838406       76127125     NM_001540         HSPB1
72   chr7   75838406       76127125     NM_012479         YWHAG
73   chr7   75838406       76127125     NM_080744         SSC4D
74   chr7   75838406       76127125     NR_003262        FDPSP2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21831564       22096319  NM_001005465    OR10G3
1   chr14   21831564       22096319  NM_001163380     RAB2B
2   chr14   21831564       22096319  NM_001170629      CHD8
3   chr14   21831564       22096319  NM_001303523      TOX4
4   chr14   21831564       22096319     NM_007192   SUPT16H
5   chr14   21831564       22096319     NM_019852    METTL3
8   chr14   21831564       22096319     NR_002916    SNORD8
9   chr14   21831564       22096319     NR_003029    SNORD9
10  chr14   21831564       22096319     NR_111966     SALL2
12  chr15   28528377       28642273     NM_004667     HERC2
13  chr15   28528377       28642273     NR_033351   GOLGA8F
14  chr15   28528377       28642273     NR_033353   GOLGA8G
15   chr7   64113425       64268121  NM_001160183    ZNF138
16   chr7   64113425       64268121  NM_001282360    ZNF107
19   chr7   64113425       64268121     NR_106898   MIR6839,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr20   14706784       14866276  NM_080676      MACROD2
1  chr20   14706784       14866276  NR_037841  MACROD2-AS1
2   chr7   62962717       63117973  NR_036246    MIR4283-1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10  135206786      135344550     NM_000773    CYP2E1
1   chr10  135206786      135344550  NM_001012508      SPRN
2   chr10  135206786      135344550     NM_138384      MTG1
3   chr10  135206786      135344550     NR_002934    SCART1
4   chr14   21839201       22018929  NM_001163380     RAB2B
5   chr14   21839201       22018929  NM_001170629      CHD8
6   chr14   21839201       22018929  NM_001303523      TOX4
7   chr14   21839201       22018929     NM_007192   SUPT16H
8   chr14   21839201       22018929     NM_019852    METTL3
11  chr14   21839201       22018929     NR_002916    SNORD8
12  chr14   21839201       22018929     NR_003029    SNORD9
13  chr14   21839201       22018929     NR_111966     SALL2
15   chr2  110136634      110426668  NM_001099289    SH3RF3
16   chr2  110136634      110426668  NM_001321504    SEPT10
18   chr2  110136634      110426668     NM_023016    SOWAHC
19   chr2  181875272      181984900  NM_001278554    UBE2E3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21773147       21905441  NM_001170629          CHD8
1   chr14   21773147       21905441     NM_007192       SUPT16H
2   chr14   21773147       21905441     NM_020366       RPGRIP1
4   chr14   21773147       21905441     NR_002916        SNORD8
5   chr14   21773147       21905441     NR_003029        SNORD9
6   chr15   30314086       30645420  NM_001282472       GOLGA8J
7   chr15   30314086       30645420     NR_026771  DKFZP434L187
8   chr15   30314086       30645420     NR_026859        ULK4P3
9   chr15   30314086       30645420     NR_033933       GOLGA8T
10   chr2   26599234       26740869     NM_004802          OTOF
11   chr2   26599234       26740869     NM_033505       SELENOI
12   chr2   26599234       26740869     NM_145038          DRC1
14  chr21   29408462       29566073     NR_126010     LOC284825
16  chr21   29408462       29566073     NR_126012  LOC101927973,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49576934       49806883  NM_001323575         AGBL4
1    chr1   49576934       49806883     NR_125988  LOC101929721
2   chr10   56466053       57484934  NM_001142770        PCDH15
5   chr10   56466053       57484934  NM_001190478      MTRNR2L5
6   chr14   21893280       22087957  NM_001005465        OR10G3
7   chr14   21893280       22087957  NM_001163380         RAB2B
8   chr14   21893280       22087957  NM_001170629          CHD8
9   chr14   21893280       22087957  NM_001303523          TOX4
10  chr14   21893280       22087957     NM_019852        METTL3
13  chr14   21893280       22087957     NR_111966         SALL2
15   chr3   60298357       60647199  NM_001320899          FHIT
16   chr3   60298357       60647199     NR_128708      MIR548BB
17   chr4   94024330       94463911     NM_001510         GRID2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr13   25275115       25531576  NM_001184993        RNF17
1  chr13   25275115       25531576  NM_001185085       ATP12A
2  chr13   25275115       25531576     NR_026730      TPTE2P1
3  chr13   25275115       25531576     NR_047594        CENPJ
4  chr20   14819341       15408746  NM_001033087      MACROD2
6  chr20   14819341       15408746     NR_037841  MACROD2-AS1
8   chr7  110307807      110623733  NM_001244606       IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   67538639       67674026  NM_001127384       CTNNA3
2   chr13   85956533       86130506     NR_046989    LINC00351
3   chr14   21935088       22042534  NM_001005465       OR10G3
4   chr14   21935088       22042534  NM_001163380        RAB2B
5   chr14   21935088       22042534  NM_001303523         TOX4
6   chr14   21935088       22042534     NM_019852       METTL3
8   chr14   21935088       22042534     NR_111966        SALL2
10  chr19    1897034        2107681  NM_001031735       IZUMO4
11  chr19    1897034        2107681     NM_001319      CSNK1G2
12  chr19    1897034        2107681  NM_001329539       SCAMP4
13  chr19    1897034        2107681     NM_003938        AP3D1
14  chr19    1897034        2107681     NM_017572        MKNK2
15  chr19    1897034        2107681     NM_017797        BTBD2
16  chr19    1897034        2107681     NM_130807        MOB3A
17  chr19    1897034        2107681     NM_138422        ADAT3
18  chr19    1897034        2107681     NR_033400  CSNK1G2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21937923       22142661  NM_001001912         OR4E2
1   chr14   21937923       22142661  NM_001005465        OR10G3
2   chr14   21937923       22142661  NM_001005466        OR10G2
3   chr14   21937923       22142661  NM_001163380         RAB2B
4   chr14   21937923       22142661  NM_001303523          TOX4
5   chr14   21937923       22142661  NM_001317107         OR4E1
6   chr14   21937923       22142661     NM_019852        METTL3
8   chr14   21937923       22142661     NR_111966         SALL2
10  chr16   78731425       78861054     NM_016373          WWOX
11   chr3   85371941       85484095  NM_001167675         CADM2
12   chr3   85371941       85484095     NR_049870       MIR5688
13   chr5  125598715      126134707  NM_001146319        GRAMD3
16   chr5  125598715      126134707  NM_001198557         LMNB1
17   chr5  125598715      126134707  NM_001201377       ALDH7A1
19   chr5  125598715      126134707     NM_032177          PHAX
20   chr5  125598715      126134707     NM_207408         TEX43
21   chr5  125598715      126134707     NR_105039  LOC101927488
22   chr5  125598715      126134707     NR_134485  LOC102723557,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr3  146587608      146695809  NR_135560  LOC101927866
1  chr4   69320793       69522158  NM_001076       UGT2B15
2  chr4   69320793       69522158  NM_001077       UGT2B17
3  chr4   69320793       69522158  NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  152375113      152596645     NM_016190          CRNN
1    chr1  152375113      152596645     NM_019060         CRCT1
2    chr1  152375113      152596645     NM_032563         LCE3D
3    chr1  152375113      152596645     NM_178431         LCE3A
4    chr1  152375113      152596645     NM_178433         LCE3B
5    chr1  152375113      152596645     NM_178434         LCE3C
6    chr1  152375113      152596645     NM_178435         LCE3E
7    chr1  152375113      152596645     NM_178438         LCE5A
8   chr15   30312073       30423758  NM_001282472       GOLGA8J
9   chr15   30312073       30423758     NR_026859        ULK4P3
10  chr16   18446666       19330874  NM_001004060         NOMO2
11  chr16   18446666       19330874     NM_001019        RPS15A
12  chr16   18446666       19330874  NM_001160364          TMC7
13  chr16   18446666       19330874  NM_001190983          COQ7
14  chr16   18446666       19330874  NM_001256720       CLEC19A
16  chr16   18446666       19330874  NM_001308157         SYT17
17  chr16   18446666       19330874  NM_001313858       ARL6IP1
20  chr16   18446666       19330874     NM_015092          SMG1
24  chr16   18446666       19330874     NR_003569       ABCC6P1
25  chr16   18446666       19330874     NR_028028      ITPRIPL2
26  chr16   18446666       19330874     NR_036140     MIR3179-1
27  chr16   18446666       19330874     NR_036142     MIR3180-2
28  chr16   18446666       19330874     NR_036144     MIR3180-3
29  chr16   18446666       19330874     NR_037442     MIR3670-1
30  chr16   18446666       19330874     NR_107060     MIR6770-2
31  chr16   18446666       19330874     NR_119379  LOC102723385,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0     chr1  143537163      144367378  NM_001123068       PPIAL4G
1     chr1  143537163      144367378  NM_001135789       PPIAL4C
2     chr1  143537163      144367378  NM_001278267        NBPF20
3     chr1  143537163      144367378  NM_001287385        FAM72C
4     chr1  143537163      144367378  NM_001345942        FAM72D
8     chr1  143537163      144367378     NR_024511     LINC00623
10    chr1  143537163      144367378     NR_104014     LINC01138
11    chr1  143537163      144367378     NR_106967       MIR6077
12    chr1  143537163      144367378     NR_111930  LOC100132057
13    chr1  143537163      144367378     NR_111953     LINC00869
15   chr15   30233968       31582281  NM_001039841     ARHGAP11B
16   chr15   30233968       31582281  NM_001146094          FAN1
18   chr15   30233968       31582281  NM_001243538     LOC283710
19   chr15   30233968       31582281  NM_001252020         TRPM1
22   chr15   30233968       31582281  NM_001282472       GOLGA8J
23   chr15   30233968       31582281  NM_001282484       GOLGA8R
24   chr15   30233968       31582281  NM_001282490       GOLGA8H
25   chr15   30233968       31582281  NM_001301025          TJP1
27   chr15   30233968       31582281     NM_017762        MTMR10
28   chr15   30233968       31582281     NM_139320      CHRFAM7A
29   chr15   30233968       31582281     NR_026771  DKFZP434L187
30   chr15   30233968       31582281     NR_026858        ULK4P1
31   chr15   30233968       31582281     NR_026859        ULK4P3
32   chr15   30233968       31582281     NR_029624        MIR211
33   chr15   30233968       31582281     NR_033933       GOLGA8T
34   chr15   30233968       31582281     NR_038253  LOC100288637
36   chr15   30233968       31582281     NR_072991      HERC2P10
37   chr15   30233968       31582281     NR_135834  LOC102725022
38   chr19    1745260        3348178     NM_000479           AMH
39   chr19    1745260        3348178  NM_001031735        IZUMO4
..     ...        ...            ...           ...           ...
66   chr19    1745260        3348178     NM_007165         SF3A2
67   chr19    1745260        3348178     NM_012458        TIMM13
68   chr19    1745260        3348178     NM_015675       GADD45B
69   chr19    1745260        3348178     NM_016199          LSM7
70   chr19    1745260        3348178     NM_017572         MKNK2
71   chr19    1745260        3348178     NM_017797         BTBD2
73   chr19    1745260        3348178     NM_020695         REXO1
74   chr19    1745260        3348178     NM_021217         ZNF77
76   chr19    1745260        3348178     NM_031918         KLF16
77   chr19    1745260        3348178     NM_032482         DOT1L
78   chr19    1745260        3348178     NM_032737         LMNB2
79   chr19    1745260        3348178     NM_052847          GNG7
80   chr19    1745260        3348178     NM_130807         MOB3A
81   chr19    1745260        3348178     NM_138422         ADAT3
83   chr19    1745260        3348178     NM_144564       SLC39A3
84   chr19    1745260        3348178     NM_144616         JSRP1
85   chr19    1745260        3348178     NM_145173        DIRAS1
86   chr19    1745260        3348178     NM_152988        SPPL2B
88   chr19    1745260        3348178     NM_182973       TMPRSS9
89   chr19    1745260        3348178     NM_198532      C19orf35
92   chr19    1745260        3348178     NR_031596       MIR1227
93   chr19    1745260        3348178     NR_031730       MIR1909
95   chr19    1745260        3348178     NR_033400   CSNK1G2-AS1
96   chr19    1745260        3348178     NR_034114  LOC100288123
97   chr19    1745260        3348178     NR_036207       MIR4321
98   chr19    1745260        3348178     NR_106847       MIR6789
99   chr19    1745260        3348178     NR_106958       MIR7108
100  chr19    1745260        3348178     NR_107004       MIR7850
101  chr19    1745260        3348178     NR_110670  LOC100996351
102  chr19    1745260        3348178     NR_134931  LOC101928602

[83 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr22   19055622       19224898  NM_001184781      DGCR2
1  chr22   19055622       19224898  NM_001256534    SLC25A1
2  chr22   19055622       19224898     NM_001835     CLTCL1
3  chr22   19055622       19224898     NM_005315       GSC2
5  chr22   19055622       19224898     NM_022719     DGCR14
6  chr22   19055622       19224898     NM_053006      TSSK2
7  chr22   19055622       19224898     NR_103767  LINC01311,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    4811926        4921009  NM_001004753     OR51F2
1   chr11    4811926        4921009  NM_001004758     OR51S1
2   chr11    4811926        4921009  NM_001004759     OR51T1
3   chr11    4811926        4921009  NM_001005177     OR52R1
4   chr13   63284976       63393632     NR_047029  LINC00448
7   chr15   20716085       20823829  NM_001145004   GOLGA6L6
8   chr15   20716085       20823829     NR_027411   GOLGA8CP
9   chr16   16427209       16600893  NM_001282511     NPIPA8
10  chr16   16427209       16600893     NR_036447     PKD1P1
11  chr16   16427209       16600893     NR_106971  MIR6511A4
12   chr4   91172544       91286749  NM_001145065     CCSER1,    chrom  cnv_start  cnv_terminate       tx_name   gene_name
0  chr16   16478060       16712964  NM_001282511      NPIPA8
1   chr5   22775750       23014436     NM_004061       CDH12
2   chr8    7844120        8312258  NM_001080826       PRAG1
3   chr8    7844120        8312258     NR_003668  DEFB109P1B
4   chr8    7844120        8312258     NR_024361    FAM86B3P
7   chr8    7844120        8312258     NR_027424      FAM66E
8   chr8    7844120        8312258     NR_031689    MIR548I3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48370826       48725803  NM_001005512        OR4A47
1   chr11   48370826       48725803  NM_001005513        OR4C45
2   chr13   69498491       70375946  NM_001286725         KLHL1
3   chr13   69498491       70375946     NR_125752     LINC00383
4   chr14   21831001       22102480  NM_001005465        OR10G3
5   chr14   21831001       22102480  NM_001005466        OR10G2
6   chr14   21831001       22102480  NM_001163380         RAB2B
7   chr14   21831001       22102480  NM_001170629          CHD8
8   chr14   21831001       22102480  NM_001303523          TOX4
9   chr14   21831001       22102480     NM_007192       SUPT16H
10  chr14   21831001       22102480     NM_019852        METTL3
13  chr14   21831001       22102480     NR_002916        SNORD8
14  chr14   21831001       22102480     NR_003029        SNORD9
15  chr14   21831001       22102480     NR_111966         SALL2
17   chr2  242432245      242574969  NM_001164356         THAP4
18   chr2  242432245      242574969  NM_001271978         STK25
21   chr2  242432245      242574969     NM_014808         FARP2
23   chr2  242432245      242574969     NM_032515           BOK
24   chr2  242432245      242574969     NR_033346       BOK-AS1
25   chr9   67608263       67811655     NR_027422        FAM27B
26   chr9   67608263       67811655     NR_103833       FAM27E3
27   chr9   67608263       67811655     NR_121606  LOC102723709
28   chr9   67608263       67811655     NR_144466  LOC105379807,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   21818588       21946254     NR_027084      FLJ36000
1   chr17   21818588       21946254     NR_028336       FAM27E5
2   chr22   17198316       17858444  NM_001037814          GAB4
3   chr22   17198316       17858444  NM_001163079         CECR6
4   chr22   17198316       17858444  NM_001282227         CECR1
6   chr22   17198316       17858444  NM_001289905        IL17RA
7   chr22   17198316       17858444  NM_001290046         CECR2
8   chr22   17198316       17858444     NM_017829         CECR5
11  chr22   17198316       17858444     NM_175878          XKR3
13  chr22   17198316       17858444     NR_003607       HSFY1P1
14  chr22   17198316       17858444     NR_015352         CECR7
15  chr22   17198316       17858444     NR_024482     CECR5-AS1
16  chr22   17198316       17858444     NR_038398         CECR3
17  chr22   17198316       17858444     NR_103793  LOC100996342
18  chr22   17198316       17858444     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143710318      143846951  NM_001123068       PPIAL4G
1    chr1  143710318      143846951     NR_104014     LINC01138
2    chr1  143710318      143846951     NR_111930  LOC100132057
3   chr11    4203581        4577284  NM_001004137        OR52M1
4   chr11    4203581        4577284  NM_001005161        OR52B4
5   chr11    4203581        4577284  NM_001005171        OR52K1
6   chr11    4203581        4577284  NM_001005172        OR52K2
7   chr11    4203581        4577284     NM_003141        TRIM21
8   chr11    4203581        4577284     NR_047550  LOC100506082
9   chr16   15231807       15392177  NM_001285449        PDXDC1
11  chr16   15231807       15392177     NR_037466     MIR3180-4
12  chr16   78789000       79082238     NM_016373          WWOX
13   chr2  202186330      202325195  NM_001206864        STRADB
14   chr2  202186330      202325195     NM_015049         TRAK2
15   chr2  202186330      202325195     NR_110620      ALS2CR12
16   chr3  163655647      163968334     NR_031665       MIR1263,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   85416067       85516732  NM_001079910        LRRIQ1
1   chr12   85416067       85516732  NM_001100917       TSPAN19
2   chr14   42112213       42313630  NM_001346175         LRFN5
3   chr16   21518671       21662778  NM_001077180        METTL9
5   chr16   21518671       21662778     NM_005849         IGSF6
6   chr16   21518671       21662778     NR_002594      SLC7A5P2
7   chr16   21518671       21662778     NR_110930  LOC101927814
8   chr16   80789440       81583628  NM_001076780        PKD1L2
9   chr16   80789440       81583628  NM_001100625         CENPN
10  chr16   80789440       81583628  NM_001100873      C16orf46
14  chr16   80789440       81583628  NM_001300728         ATMIN
15  chr16   80789440       81583628     NM_004483          GCSH
17  chr16   80789440       81583628     NM_017429          BCO1
19  chr16   80789440       81583628     NM_020188          CMC2
20  chr16   80789440       81583628     NM_022041           GAN
21  chr16   80789440       81583628     NM_030629          CMIP
24  chr16   80789440       81583628     NM_152342         CDYL2
26  chr16   80789440       81583628     NR_039871       MIR4720
27  chr16   80789440       81583628     NR_107008       MIR7854
28  chr16   80789440       81583628     NR_131948       PRCAT47
29  chr20   14867860       15132333     NM_080676       MACROD2
30  chr20   14867860       15132333     NR_037841   MACROD2-AS1
32   chr7  110577330      110855053  NM_001099658         LRRN3
33   chr7  110577330      110855053  NM_001244606        IMMP2L
35   chr8    6955215        7123194     NR_027000     LINC00965,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21912808       22018727  NM_001163380         RAB2B
1   chr14   21912808       22018727  NM_001303523          TOX4
2   chr14   21912808       22018727     NM_019852        METTL3
4   chr14   21912808       22018727     NR_111966         SALL2
6   chr14   80077075       80228491  NM_001272020         NRXN3
9   chr16   18503615       18788748  NM_001004060         NOMO2
10  chr16   18503615       18788748     NR_003569       ABCC6P1
11  chr16   18503615       18788748     NR_036140     MIR3179-1
12   chr2   35648445       35754838     NR_039629      MIR548AD
13   chr2  133556677      134110573     NM_207363        NCKAP5
14   chr2  133556677      134110573     NR_110294  LOC101928161
15   chr2  133556677      134110573     NR_135572  LOC101928185
16  chr20   14912543       15260406  NM_001033087       MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  186187905      186346815  NM_001164245       C1orf27
1    chr1  186187905      186346815  NM_001303232          PRG4
2    chr1  186187905      186346815     NM_003292           TPR
3   chr15   30258510       30501538  NM_001282472       GOLGA8J
4   chr15   30258510       30501538  NM_001301025          TJP1
5   chr15   30258510       30501538     NR_026771  DKFZP434L187
6   chr15   30258510       30501538     NR_026859        ULK4P3
7   chr15   30258510       30501538     NR_033933       GOLGA8T
8   chr22   17269176       17690633  NM_001037814          GAB4
9   chr22   17269176       17690633  NM_001163079         CECR6
10  chr22   17269176       17690633  NM_001282227         CECR1
12  chr22   17269176       17690633  NM_001289905        IL17RA
13  chr22   17269176       17690633     NM_017829         CECR5
16  chr22   17269176       17690633     NM_175878          XKR3
18  chr22   17269176       17690633     NR_003607       HSFY1P1
19  chr22   17269176       17690633     NR_015352         CECR7
20  chr22   17269176       17690633     NR_024482     CECR5-AS1
21  chr22   17269176       17690633     NR_103793  LOC100996342
22   chr9   12076609       12870797     NM_000550         TYRP1
23   chr9   12076609       12870797     NM_203403       LURAP1L
24   chr9   12076609       12870797     NR_125775   LURAP1L-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143580286      144078126  NM_001123068       PPIAL4G
1    chr1  143580286      144078126  NM_001287385        FAM72C
2    chr1  143580286      144078126  NM_001345942        FAM72D
6    chr1  143580286      144078126     NR_104014     LINC01138
7    chr1  143580286      144078126     NR_106967       MIR6077
8    chr1  143580286      144078126     NR_111930  LOC100132057
10  chr14   21833653       22028563  NM_001163380         RAB2B
11  chr14   21833653       22028563  NM_001170629          CHD8
12  chr14   21833653       22028563  NM_001303523          TOX4
13  chr14   21833653       22028563     NM_007192       SUPT16H
14  chr14   21833653       22028563     NM_019852        METTL3
17  chr14   21833653       22028563     NR_002916        SNORD8
18  chr14   21833653       22028563     NR_003029        SNORD9
19  chr14   21833653       22028563     NR_111966         SALL2
21   chr7  110640452      110743377  NM_001099658         LRRN3
22   chr7  110640452      110743377  NM_001244606        IMMP2L
24   chr9   66538373       66655854     NR_122076     LOC403323
26   chr9   66538373       66655854     NR_126047     LOC728673,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143490566      144789088  NM_001123068       PPIAL4G
1    chr1  143490566      144789088  NM_001135789       PPIAL4C
2    chr1  143490566      144789088  NM_001277444         NBPF9
3    chr1  143490566      144789088  NM_001278267        NBPF20
4    chr1  143490566      144789088  NM_001287385        FAM72C
5    chr1  143490566      144789088  NM_001345942        FAM72D
9    chr1  143490566      144789088     NR_003242        PFN1P2
10   chr1  143490566      144789088     NR_024511     LINC00623
12   chr1  143490566      144789088     NR_102405         NBPF8
13   chr1  143490566      144789088     NR_104014     LINC01138
14   chr1  143490566      144789088     NR_106967       MIR6077
15   chr1  143490566      144789088     NR_111930  LOC100132057
16   chr1  143490566      144789088     NR_111953     LINC00869
18  chr16   21751821       22010966  NM_001161683          OTOA
19  chr16   21751821       22010966  NM_001310148        NPIPB4
20  chr16   21751821       22010966     NM_003366        UQCRC2
23  chr16   21751821       22010966     NM_173806         PDZD9
24  chr16   21751821       22010966     NR_003370        RRN3P1
25   chr4  167587733      167881634  NM_001204353        SPOCK3
28   chr7  110708514      110883539  NM_001099658         LRRN3
29   chr7  110708514      110883539  NM_001244606        IMMP2L
31   chr9  119695185      119875169     NM_014010         ASTN2,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2  186253067      187571579  NM_001144999         ITGAV
2  chr2  186253067      187571579     NM_018471        ZC3H15
3  chr2  186253067      187571579     NM_173651         FSIP2
4  chr2  186253067      187571579     NM_177454       FAM171B
5  chr2  186253067      187571579     NR_110214  LOC101927196
8  chr2  186253067      187571579     NR_110218     LINC01473
9  chr2  186253067      187571579     NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   99213951       99368647  NM_001243270         CNTN5
2   chr14   81671073       81929382  NM_001256430         STON2
3   chr14   81671073       81929382  NM_001278940        GTF2A1
6   chr14   81671073       81929382     NR_109999  LOC100506700
7   chr14   81671073       81929382     NR_135252  LOC101928504
8   chr15   28429703       28781818     NM_004667         HERC2
9   chr15   28429703       28781818     NR_033351       GOLGA8F
11  chr15   28429703       28781818     NR_033353       GOLGA8G
13  chr15   28429703       28781818     NR_039734     MIR4509-3
15  chr20    9109049        9254951  NM_001172646         PLCB4
17  chr22   17232439       19111355  NM_001037814          GAB4
18  chr22   17232439       19111355  NM_001122731        MICAL3
19  chr22   17232439       19111355  NM_001127649         PEX26
21  chr22   17232439       19111355  NM_001163079         CECR6
22  chr22   17232439       19111355  NM_001184781         DGCR2
23  chr22   17232439       19111355  NM_001193414         TUBA8
24  chr22   17232439       19111355  NM_001195226         PRODH
26  chr22   17232439       19111355  NM_001244567           BID
29  chr22   17232439       19111355  NM_001270733       BCL2L13
30  chr22   17232439       19111355  NM_001282227         CECR1
32  chr22   17232439       19111355  NM_001288707  LOC101929372
33  chr22   17232439       19111355  NM_001289905        IL17RA
34  chr22   17232439       19111355  NM_001290046         CECR2
36  chr22   17232439       19111355  NM_001303484      SLC25A18
37  chr22   17232439       19111355     NM_001696      ATP6V1E1
38  chr22   17232439       19111355     NM_005675         DGCR6
42  chr22   17232439       19111355     NM_017414         USP18
43  chr22   17232439       19111355     NM_017829         CECR5
46  chr22   17232439       19111355     NM_175878          XKR3
48  chr22   17232439       19111355     NR_002733         DGCR5
49  chr22   17232439       19111355     NR_003267         GGT3P
50  chr22   17232439       19111355     NR_003607       HSFY1P1
51  chr22   17232439       19111355     NR_015352         CECR7
52  chr22   17232439       19111355     NR_024157        DGCR11
53  chr22   17232439       19111355     NR_024159         DGCR9
54  chr22   17232439       19111355     NR_024417      FLJ41941
55  chr22   17232439       19111355     NR_024482     CECR5-AS1
56  chr22   17232439       19111355     NR_026651        DGCR10
57  chr22   17232439       19111355     NR_030378        MIR648
58  chr22   17232439       19111355     NR_036168     MIR3198-1
59  chr22   17232439       19111355     NR_038398         CECR3
61  chr22   17232439       19111355     NR_103718     LINC00528
62  chr22   17232439       19111355     NR_103793  LOC100996342
64  chr22   17232439       19111355     NR_135922  LOC102725072
65  chr22   17232439       19111355     NR_136561     LOC642643
66  chr22   17232439       19111355     NR_136570  LOC100996415
67  chr22   17232439       19111355     NR_136571  LOC100996432
68  chr22   17232439       19111355     NR_136574  LOC105379550,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   18982272       20393468     NM_000407         GP1BB
1   chr22   18982272       20393468     NM_000754          COMT
2   chr22   18982272       20393468  NM_001009939         SEPT5
3   chr22   18982272       20393468  NM_001035247         UFD1L
6   chr22   18982272       20393468  NM_001166242      C22orf39
7   chr22   18982272       20393468  NM_001178010         CDC45
8   chr22   18982272       20393468  NM_001184781         DGCR2
9   chr22   18982272       20393468  NM_001190326         DGCR8
10  chr22   18982272       20393468  NM_001242313      TMEM191B
11  chr22   18982272       20393468  NM_001243537       CCDC188
12  chr22   18982272       20393468  NM_001256534       SLC25A1
13  chr22   18982272       20393468  NM_001278639        RANBP1
16  chr22   18982272       20393468  NM_001282512        TXNRD2
17  chr22   18982272       20393468  NM_001283116        TANGO2
18  chr22   18982272       20393468  NM_001318151        MRPL40
22  chr22   18982272       20393468     NM_001670         ARVCF
23  chr22   18982272       20393468     NM_001835        CLTCL1
25  chr22   18982272       20393468     NM_003277         CLDN5
26  chr22   18982272       20393468     NM_003325          HIRA
28  chr22   18982272       20393468     NM_005315          GSC2
30  chr22   18982272       20393468     NM_005992          TBX1
33  chr22   18982272       20393468     NM_013373        ZDHHC8
34  chr22   18982272       20393468     NM_022719        DGCR14
35  chr22   18982272       20393468     NM_022727        TRMT2A
36  chr22   18982272       20393468     NM_023004         RTN4R
37  chr22   18982272       20393468     NM_024627      C22orf29
38  chr22   18982272       20393468     NM_033257        DGCR6L
39  chr22   18982272       20393468     NM_053004         GNB1L
40  chr22   18982272       20393468     NM_053006         TSSK2
44  chr22   18982272       20393468     NR_003563       PI4KAP1
45  chr22   18982272       20393468     NR_024157        DGCR11
46  chr22   18982272       20393468     NR_024159         DGCR9
47  chr22   18982272       20393468     NR_024381     LINC00895
48  chr22   18982272       20393468     NR_026651        DGCR10
49  chr22   18982272       20393468     NR_026919     LINC00896
50  chr22   18982272       20393468     NR_029706        MIR185
51  chr22   18982272       20393468     NR_031618       MIR1286
52  chr22   18982272       20393468     NR_031706       MIR1306
53  chr22   18982272       20393468     NR_037412       MIR3618
54  chr22   18982272       20393468     NR_037611   SEPT5-GP1BB
56  chr22   18982272       20393468     NR_038460     LOC284865
57  chr22   18982272       20393468     NR_039918       MIR4761
58  chr22   18982272       20393468     NR_103767     LINC01311
59  chr22   18982272       20393468     NR_106874       MIR6816
60  chr22   18982272       20393468     NR_110533         DGCR5
61  chr22   18982272       20393468     NR_136560       FAM230A
62  chr22   18982272       20393468     NR_136572  LOC101927859,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2   78185120       78770182  NR_110287  LOC101927948
1  chr2   78185120       78770182  NR_110288  LOC101927967
2  chr2  167163949      167492492  NM_002976         SCN7A
3  chr2  167163949      167492492  NM_002977         SCN9A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245030658      245301654  NM_001143943        EFCAB2
3    chr1  245030658      245301654     NR_111907  LOC101928068
4   chr14   21780470       21927761  NM_001163380         RAB2B
5   chr14   21780470       21927761  NM_001170629          CHD8
6   chr14   21780470       21927761     NM_007192       SUPT16H
7   chr14   21780470       21927761     NM_020366       RPGRIP1
10  chr14   21780470       21927761     NR_002916        SNORD8
11  chr14   21780470       21927761     NR_003029        SNORD9
12  chr15   28159295       28278524     NM_000275          OCA2
14   chr2   51236572       51339541  NM_001330079         NRXN1
17   chr2   51236572       51339541     NR_135237     LOC730100
18   chr8   97749652       98246343     NM_016134           CPQ
19   chr8   97749652       98246343     NR_125390  LOC101927066,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143492679      143955539  NM_001123068       PPIAL4G
1    chr1  143492679      143955539  NM_001287385        FAM72C
2    chr1  143492679      143955539  NM_001345942        FAM72D
6    chr1  143492679      143955539     NR_104014     LINC01138
7    chr1  143492679      143955539     NR_106967       MIR6077
8    chr1  143492679      143955539     NR_111930  LOC100132057
10  chr13   95283156       95824201  NM_001301829         ABCC4
12  chr13   95283156       95824201     NM_007084         SOX21
13  chr13   95283156       95824201     NM_180989        GPR180
14  chr13   95283156       95824201     NR_046514     SOX21-AS1
15  chr13   95283156       95824201     NR_047487     LINC00557
16  chr13   95283156       95824201     NR_110754  LOC101927284
17  chr13   95283156       95824201     NR_120417  LOC101927248
18  chr14   81628721       81849270  NM_001256430         STON2
19  chr14   81628721       81849270  NM_001278940        GTF2A1
22  chr14   81628721       81849270     NR_003021       SNORA79
23  chr14   81628721       81849270     NR_135252  LOC101928504
24   chr7  110722254      110858538  NM_001099658         LRRN3
25   chr7  110722254      110858538  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82179881       82282108  NM_001297704        ADGRL2
2    chr1  112373089      112561700  NM_001270945     LOC643355
3    chr1  112373089      112561700     NM_172198         KCND3
4    chr1  112373089      112561700     NR_046619     KCND3-AS1
5    chr1  112373089      112561700     NR_046783     KCND3-IT1
6   chr10   81459572       81579966  NM_001278495        NUTM2B
7   chr10   81459572       81579966     NR_120611    NUTM2B-AS1
10  chr12   85421538       85564947  NM_001079910        LRRIQ1
11  chr12   85421538       85564947  NM_001100917       TSPAN19
12   chr2   63140989       63670453  NM_001042692         WDPCP
13   chr2   63140989       63670453  NM_001142614         EHBP1
15   chr2   63140989       63670453  NM_001199770          OTX1
18   chr2   63140989       63670453     NR_027069  LOC100132215
20   chr2   63140989       63670453     NR_036635       DBIL5P2
22  chr20   14694402       14988303     NM_080676       MACROD2
23  chr20   14694402       14988303     NR_037841   MACROD2-AS1
25  chr22   17186349       17301566     NM_175878          XKR3
26  chr22   17186349       17301566     NR_134584  LOC101929350
27  chr22   17244042       17362058     NM_175878          XKR3
28  chr22   17244042       17362058     NR_003607       HSFY1P1
29   chr4   69266645       69415856     NM_001077       UGT2B17
30   chr4   69266645       69415856     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28226116       29064209     NM_000275          OCA2
1   chr15   28226116       29064209  NM_001282468       GOLGA8M
3   chr15   28226116       29064209     NM_004667         HERC2
4   chr15   28226116       29064209     NR_026589       WHAMMP2
5   chr15   28226116       29064209     NR_033351       GOLGA8F
7   chr15   28226116       29064209     NR_033353       GOLGA8G
9   chr15   28226116       29064209     NR_036443       HERC2P9
10  chr15   28226116       29064209     NR_036475  LOC100289656
11  chr15   28226116       29064209     NR_037599     PDCD6IPP2
12  chr15   28226116       29064209     NR_039734     MIR4509-3
14  chr16   15383794       15541093  NM_001128423        MPV17L
15  chr16   15383794       15541093  NM_001277325        NPIPA5
16  chr16   15383794       15541093     NM_033201      C16orf45
17   chr5   12368582       13352969     NR_033383     LINC01194
18   chr5   12368582       13352969     NR_039659       MIR4454,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143754871      143957317  NM_001123068       PPIAL4G
1    chr1  143754871      143957317  NM_001287385        FAM72C
2    chr1  143754871      143957317  NM_001345942        FAM72D
7   chr16   21469696       21640350  NM_001077180        METTL9
9   chr16   21469696       21640350     NR_002594      SLC7A5P2
10  chr16   21469696       21640350     NR_027155        SMG1P3
11  chr16   21469696       21640350     NR_049833     MIR3680-2
12  chr16   21469696       21640350     NR_110930  LOC101927814
13   chr4    9051606       10645668     NM_000798          DRD5
14   chr4    9051606       10645668  NM_001001290        SLC2A9
15   chr4    9051606       10645668  NM_001040448       DEFB131
16   chr4    9051606       10645668  NM_001242326      USP17L25
24   chr4    9051606       10645668  NM_001256852      USP17L10
25   chr4    9051606       10645668  NM_001256853      USP17L12
27   chr4    9051606       10645668  NM_001256854      USP17L11
30   chr4    9051606       10645668  NM_001256855      USP17L13
31   chr4    9051606       10645668  NM_001256857      USP17L17
32   chr4    9051606       10645668  NM_001256860      USP17L19
33   chr4    9051606       10645668  NM_001256861      USP17L20
34   chr4    9051606       10645668  NM_001256894      USP17L15
35   chr4    9051606       10645668     NM_005112          WDR1
37   chr4    9051606       10645668     NM_052964          CLNK
38   chr4    9051606       10645668     NM_053042       ZNF518B
39   chr4    9051606       10645668     NR_027279      USP17L6P
40   chr4    9051606       10645668     NR_031688      MIR548I2
41   chr4    9051606       10645668     NR_036090       MIR3138
42   chr4    9051606       10645668     NR_046416      USP17L9P
43   chr8    6941296        7423466  NM_001040705      DEFB107B
44   chr8    6941296        7423466  NM_001081551      DEFB103A
45   chr8    6941296        7423466  NM_001164457       ZNF705G
46   chr8    6941296        7423466  NM_001205266        DEFB4B
47   chr8    6941296        7423466  NM_001256873       USP17L1
48   chr8    6941296        7423466  NM_001256874       USP17L4
49   chr8    6941296        7423466  NM_001282478       PRR23D2
50   chr8    6941296        7423466  NM_001282479       PRR23D1
51   chr8    6941296        7423466     NM_058200       SPAG11B
55   chr8    6941296        7423466     NM_080389      DEFB104A
56   chr8    6941296        7423466     NM_152250      DEFB105A
57   chr8    6941296        7423466     NM_152251      DEFB106A
58   chr8    6941296        7423466     NR_003668    DEFB109P1B
59   chr8    6941296        7423466     NR_027000     LINC00965
62   chr8    6941296        7423466     NR_027423        FAM66B
63   chr8    6941296        7423466     NR_046343      FAM90A7P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244986266      246212381  NM_001143943        EFCAB2
1    chr1  244986266      246212381  NM_001167740         SMYD3
3    chr1  244986266      246212381  NM_001312871         COX20
5    chr1  244986266      246212381     NM_004501        HNRNPU
6    chr1  244986266      246212381     NM_018012        KIF26B
10   chr1  244986266      246212381     NR_111907  LOC101928068
11   chr1  244986266      246212381     NR_132782      SNORA100
12  chr11    4799144        4900516  NM_001004753        OR51F2
13  chr11    4799144        4900516  NM_001004758        OR51S1
14  chr11    4799144        4900516  NM_001005177        OR52R1
15  chr14   21949284       22129012  NM_001005465        OR10G3
16  chr14   21949284       22129012  NM_001005466        OR10G2
17  chr14   21949284       22129012  NM_001303523          TOX4
18  chr14   21949284       22129012     NM_019852        METTL3
19  chr14   21949284       22129012     NR_111966         SALL2
21   chr2   97333476       97864926  NM_001122646       FAM178B
22   chr2   97333476       97864926  NM_001164315       ANKRD36
24   chr2   97333476       97864926  NM_001293083        FER1L5
25   chr2   97333476       97864926  NM_001320849        FAHD2B
26   chr2   97333476       97864926  NM_001322354        LMAN2L
27   chr2   97333476       97864926     NM_016466       ANKRD39
29   chr2   97333476       97864926     NM_017623         CNNM3
30   chr2   97333476       97864926     NM_017789        SEMA4C
31   chr2   97333476       97864926     NM_020184         CNNM4
33   chr2   97333476       97864926     NM_144994       ANKRD23
35   chr2   97333476       97864926     NR_036074       MIR3127
36   chr2   97333476       97864926     NR_110209  LOC101927053
37  chr20   14734095       15709461  NM_001033087       MACROD2
39  chr20   14734095       15709461     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21840972       22000363  NM_001163380         RAB2B
1   chr14   21840972       22000363  NM_001170629          CHD8
2   chr14   21840972       22000363  NM_001303523          TOX4
3   chr14   21840972       22000363     NM_007192       SUPT16H
4   chr14   21840972       22000363     NM_019852        METTL3
7   chr14   21840972       22000363     NR_002916        SNORD8
8   chr14   21840972       22000363     NR_003029        SNORD9
9   chr14   21840972       22000363     NR_111966         SALL2
11  chr20    5213046        5925648  NM_001303477     C20orf196
13  chr20    5213046        5925648     NM_001819          CHGB
14  chr20    5213046        5925648     NM_015939         TRMT6
15  chr20    5213046        5925648     NM_019593        GPCPD1
16  chr20    5213046        5925648     NM_144773        PROKR2
17  chr20    5213046        5925648     NR_015406     LINC00654
18  chr20    5213046        5925648     NR_029405     LOC643406
19  chr20    5213046        5925648     NR_038240     LINC00658
20  chr20    5213046        5925648     NR_109860  LOC101929207,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr17   78121586       78709424     NM_000199          SGSH
1   chr17   78121586       78709424  NM_001164637         ENDOV
3   chr17   78121586       78709424  NM_001166349      SLC26A11
4   chr17   78121586       78709424  NM_001256071        RNF213
5   chr17   78121586       78709424  NM_001257970        CARD14
6   chr17   78121586       78709424     NM_002522         NPTX1
7   chr17   78121586       78709424     NM_020761         RPTOR
11  chr17   78121586       78709424     NR_029376  LOC100294362
12  chr17   78121586       78709424     NR_039883       MIR4730
14  chr20   14781973       15048964     NM_080676       MACROD2
15  chr20   14781973       15048964     NR_037841   MACROD2-AS1
17   chr3   60344929       60470004  NM_001320899          FHIT
18   chr5  146452490      146835886  NM_001112724        STK32A
19   chr5  146452490      146835886  NM_001197294        DPYSL3
20   chr5  146452490      146835886  NM_001271899       PPP2R2B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21901289       22015177  NM_001163380         RAB2B
1   chr14   21901289       22015177  NM_001303523          TOX4
2   chr14   21901289       22015177     NM_019852        METTL3
3   chr14   21901289       22015177     NM_020920          CHD8
5   chr14   21901289       22015177     NR_111966         SALL2
7   chr17     153036         264466  NM_001013672      C17orf97
8   chr17     153036         264466  NM_001190411        RPH3AL
9   chr17     153036         264466     NR_040011  LOC100506388
10  chr17     153036         264466     NR_136407  LOC105371430
11  chr19   33773429       33884945     NM_000285          PEPD
12  chr19   33773429       33884945  NM_001252296         CEBPG
13  chr19   33773429       33884945  NM_001285829         CEBPA
15  chr19   33773429       33884945     NR_026887     CEBPA-AS1
16   chr4   69289601       69572440     NM_001076       UGT2B15
17   chr4   69289601       69572440     NM_001077       UGT2B17
18   chr4   69289601       69572440     NM_014058     TMPRSS11E
19   chr5   99710337      100670920     NM_005668       ST8SIA4
21   chr5   99710337      100670920     NM_198507       FAM174A
22   chr5   99710337      100670920     NR_027503  LOC100133050
23   chr5   99710337      100670920     NR_031686       MIR548P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   25602053       27020174  NM_001135092         MUC15
1   chr11   25602053       27020174  NM_001313726          ANO3
4   chr11   25602053       27020174     NM_178498       SLC5A12
5   chr11   25602053       27020174     NM_203371         FIBIN
6   chr11   25602053       27020174     NR_132968  LOC105376599
7   chr11   48324786       48425693  NM_001004702         OR4C3
8   chr11   48324786       48425693  NM_001004725         OR4S1
9   chr11   48324786       48425693  NM_001005513        OR4C45
10  chr16   18190135       18652995  NM_001004060         NOMO2
11  chr16   18190135       18652995  NM_001282511        NPIPA8
12  chr16   18190135       18652995     NR_003569       ABCC6P1
13  chr16   18190135       18652995     NR_036140     MIR3179-1
14  chr16   18190135       18652995     NR_036142     MIR3180-2
15  chr16   18190135       18652995     NR_036144     MIR3180-3
16  chr16   18190135       18652995     NR_037442     MIR3670-1
17  chr16   18190135       18652995     NR_103772  LOC100288162
18  chr16   18190135       18652995     NR_106971     MIR6511A4
19  chr16   18190135       18652995     NR_107060     MIR6770-2
20  chr22   32331042       32547496     NM_000343        SLC5A1
21  chr22   32331042       32547496  NM_001010859      C22orf42
23  chr22   32331042       32547496  NM_001302819      C22orf24
24  chr22   32331042       32547496     NM_003405         YWHAH
26  chr22   32331042       32547496     NR_040114       AP1B1P1
27   chr4   16214959       17183407     NM_001290          LDB2
28   chr4   16214959       17183407     NM_153365         TAPT1
29   chr4   16214959       17183407     NR_027696     TAPT1-AS1
30   chr4   16214959       17183407     NR_125919  LOC101929123
32   chr5   17696480       17918012     NR_134286     LOC646241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144806818      144986094  NM_001002810       PDE4DIP
7    chr1  144806818      144986094  NM_001277444         NBPF9
8    chr1  144806818      144986094  NM_001278267        NBPF20
10   chr1  144806818      144986094     NR_102405         NBPF8
11   chr1  145354793      145515402  NM_001039888      ANKRD34A
12   chr1  145354793      145515402  NM_001277444         NBPF9
13   chr1  145354793      145515402  NM_001278267        NBPF20
14   chr1  145354793      145515402  NM_001302371        NBPF10
15   chr1  145354793      145515402  NM_001313972         TXNIP
16   chr1  145354793      145515402     NM_005105         RBM8A
18   chr1  145354793      145515402     NM_032305       POLR3GL
19   chr1  145354793      145515402     NM_145277          HFE2
20   chr1  145354793      145515402     NM_153713         LIX1L
21   chr1  145354793      145515402     NR_002328        GNRHR2
24   chr1  145354793      145515402     NR_104217       NBPF25P
25   chr1  145354793      145515402     NR_125967  LOC101928979
26  chr10   81501496       81609711     NR_029407     LOC642361
27  chr10   81501496       81609711     NR_120611    NUTM2B-AS1
30  chr13   46104071       46221927     NM_031431          COG3
31  chr13   46104071       46221927     NM_182542       ERICH6B
32   chr2  234355189      236025835     NM_000463        UGT1A1
33   chr2  234355189      236025835  NM_001001394        DNAJB3
34   chr2  234355189      236025835     NM_001072        UGT1A6
35   chr2  234355189      236025835  NM_001282431         ARL4C
36   chr2  234355189      236025835  NM_001282962         HJURP
37   chr2  234355189      236025835  NM_001287395        MROH2A
38   chr2  234355189      236025835     NM_003648          DGKD
40   chr2  234355189      236025835     NM_006944          SPP2
41   chr2  234355189      236025835     NM_007120        UGT1A4
42   chr2  234355189      236025835     NM_014521        SH3BP4
43   chr2  234355189      236025835     NM_018218         USP40
44   chr2  234355189      236025835     NM_019075       UGT1A10
45   chr2  234355189      236025835     NM_019076        UGT1A8
46   chr2  234355189      236025835     NM_019077        UGT1A7
47   chr2  234355189      236025835     NM_019078        UGT1A5
48   chr2  234355189      236025835     NM_019093        UGT1A3
49   chr2  234355189      236025835     NM_021027        UGT1A9
50   chr2  234355189      236025835     NM_024080         TRPM8
53   chr2  234355189      236025835     NR_024322        MSL3P1
54   chr2  234355189      236025835     NR_037694  LOC100286922
55   chr2  234355189      236025835     NR_132376     LINC01173
56   chr9   41488243       41627108  NM_001113541     SPATA31A5
57   chr9   41488243       41627108     NM_015667     SPATA31A7
58   chr9   41488243       41627108     NR_003528       ZNF658B
59   chr9   41488243       41627108     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81464094       81741001  NM_001278495        NUTM2B
1   chr10   81464094       81741001     NM_003019         SFTPD
2   chr10   81464094       81741001     NR_002724         MBL1P
3   chr10   81464094       81741001     NR_029407     LOC642361
4   chr10   81464094       81741001     NR_033857       BMS1P21
5   chr10   81464094       81741001     NR_120611    NUTM2B-AS1
8   chr15   28479185       29133788  NM_001282468       GOLGA8M
9   chr15   28479185       29133788     NM_004667         HERC2
10  chr15   28479185       29133788     NR_026589       WHAMMP2
11  chr15   28479185       29133788     NR_033351       GOLGA8F
13  chr15   28479185       29133788     NR_033353       GOLGA8G
15  chr15   28479185       29133788     NR_036443       HERC2P9
16  chr15   28479185       29133788     NR_036475  LOC100289656
17  chr15   28479185       29133788     NR_037599     PDCD6IPP2
18  chr15   28479185       29133788     NR_039734     MIR4509-3
20  chr15   28479185       29133788     NR_047567     GOLGA6L7P
21  chr15   99890941      100180975  NM_001130928         MEF2A
22  chr15   99890941      100180975  NM_001284400        LRRC28
25   chr7   75779263       75904278  NM_001110199         SRRM3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr12    1032817        1146107  NM_001297419     RAD52
4   chr12    1032817        1146107  NM_001301248      ERC1
6   chr14   21800192       23148505  NM_001001912     OR4E2
7   chr14   21800192       23148505  NM_001005465    OR10G3
8   chr14   21800192       23148505  NM_001005466    OR10G2
9   chr14   21800192       23148505  NM_001163380     RAB2B
10  chr14   21800192       23148505  NM_001170629      CHD8
11  chr14   21800192       23148505  NM_001303523      TOX4
12  chr14   21800192       23148505  NM_001317107     OR4E1
13  chr14   21800192       23148505     NM_001344      DAD1
14  chr14   21800192       23148505     NM_007192   SUPT16H
15  chr14   21800192       23148505     NM_019852    METTL3
16  chr14   21800192       23148505     NM_020366   RPGRIP1
18  chr14   21800192       23148505     NM_022060     ABHD4
20  chr14   21800192       23148505     NR_002916    SNORD8
21  chr14   21800192       23148505     NR_003029    SNORD9
22  chr14   21800192       23148505     NR_111966     SALL2
24   chr2  234369776      234597882     NM_003648      DGKD
25   chr2  234369776      234597882     NM_018218     USP40
26   chr2  234369776      234597882     NM_019075   UGT1A10
27   chr2  234369776      234597882     NM_019076    UGT1A8
28   chr2  234369776      234597882     NM_019077    UGT1A7
29   chr2  234369776      234597882     NM_021027    UGT1A9
31   chr5  104362928      105959718     NR_000039   RAB9BP1
32   chr6  120239125      120369884     NR_036098   MIR3144
33   chr7   64080720       64244170  NM_001282360    ZNF107
35   chr7   64080720       64244170     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21818102       23044217  NM_001001912     OR4E2
1   chr14   21818102       23044217  NM_001005465    OR10G3
2   chr14   21818102       23044217  NM_001005466    OR10G2
3   chr14   21818102       23044217  NM_001163380     RAB2B
4   chr14   21818102       23044217  NM_001170629      CHD8
5   chr14   21818102       23044217  NM_001303523      TOX4
6   chr14   21818102       23044217  NM_001317107     OR4E1
7   chr14   21818102       23044217     NM_001344      DAD1
8   chr14   21818102       23044217     NM_007192   SUPT16H
9   chr14   21818102       23044217     NM_019852    METTL3
10  chr14   21818102       23044217     NM_020366   RPGRIP1
13  chr14   21818102       23044217     NR_002916    SNORD8
14  chr14   21818102       23044217     NR_003029    SNORD9
15  chr14   21818102       23044217     NR_111966     SALL2
17   chr7  110674400      110775526  NM_001099658     LRRN3
18   chr7  110674400      110775526  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   19699176       20015352  NM_001271850         TPTE2
1   chr13   19699176       20015352     NM_006001        TUBA3C
3   chr13   19699176       20015352     NR_027248     ANKRD26P3
4   chr13   19699176       20015352     NR_034026     LINC00421
7   chr13   19699176       20015352     NR_126054  LOC101928697
8   chr14   21887169       22176078  NM_001001912         OR4E2
9   chr14   21887169       22176078  NM_001005465        OR10G3
10  chr14   21887169       22176078  NM_001005466        OR10G2
11  chr14   21887169       22176078  NM_001163380         RAB2B
12  chr14   21887169       22176078  NM_001170629          CHD8
13  chr14   21887169       22176078  NM_001303523          TOX4
14  chr14   21887169       22176078  NM_001317107         OR4E1
15  chr14   21887169       22176078     NM_019852        METTL3
18  chr14   21887169       22176078     NR_111966         SALL2
20   chr9   41893347       42019858     NR_003670        FGF7P3
21   chr9   41893347       42019858     NR_015363         GLIDR
24   chr9   41893347       42019858     NR_126048  LOC102724238
25   chr9   41893347       42019858     NR_126049     LOC554249,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr12   57724084       57828713  NM_001330122       R3HDM2
1  chr12   57724084       57828713     NM_005538        INHBC
3  chr20   14836993       14991003     NM_080676      MACROD2
4  chr20   14836993       14991003     NR_037841  MACROD2-AS1
6   chr7  110390529      110775518  NM_001099658        LRRN3
7   chr7  110390529      110775518  NM_001244606       IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr12   85479469       85636177  NM_001079910         LRRIQ1
1   chr14   21925576       24469851     NM_000257           MYH7
2   chr14   21925576       24469851  NM_001001912          OR4E2
3   chr14   21925576       24469851  NM_001005465         OR10G3
4   chr14   21925576       24469851  NM_001005466         OR10G2
5   chr14   21925576       24469851  NM_001039619          PRMT5
6   chr14   21925576       24469851  NM_001042635           NGDN
7   chr14   21925576       24469851  NM_001099780         PSMB11
8   chr14   21925576       24469851  NM_001126105         SLC7A7
10  chr14   21925576       24469851  NM_001130706       C14orf93
11  chr14   21925576       24469851  NM_001130725          PSMB5
13  chr14   21925576       24469851  NM_001146028           JPH4
14  chr14   21925576       24469851  NM_001163380          RAB2B
15  chr14   21925576       24469851  NM_001164815          ACIN1
17  chr14   21925576       24469851  NM_001193635        DHRS4L2
19  chr14   21925576       24469851  NM_001199839         BCL2L2
20  chr14   21925576       24469851  NM_001199864  BCL2L2-PABPN1
21  chr14   21925576       24469851  NM_001256323          THTPA
22  chr14   21925576       24469851  NM_001267036         SLC7A8
24  chr14   21925576       24469851  NM_001276318        PPP1R3E
25  chr14   21925576       24469851  NM_001277174            EFS
26  chr14   21925576       24469851  NM_001282322        RNF212B
27  chr14   21925576       24469851  NM_001282475          AP1G2
29  chr14   21925576       24469851  NM_001282988          DHRS4
30  chr14   21925576       24469851  NM_001289050       SLC22A17
31  chr14   21925576       24469851  NM_001289097          AJUBA
32  chr14   21925576       24469851  NM_001303523           TOX4
33  chr14   21925576       24469851  NM_001317107          OR4E1
34  chr14   21925576       24469851  NM_001318835          DHRS2
35  chr14   21925576       24469851  NM_001318870         MRPL52
36  chr14   21925576       24469851  NM_001329226          LRP10
37  chr14   21925576       24469851     NM_001344           DAD1
38  chr14   21925576       24469851     NM_001805          CEBPE
39  chr14   21925576       24469851     NM_002471           MYH6
42  chr14   21925576       24469851     NM_004643         PABPN1
43  chr14   21925576       24469851     NM_004995          MMP14
44  chr14   21925576       24469851     NM_005015          OXA1L
46  chr14   21925576       24469851     NM_017815          HAUS4
47  chr14   21925576       24469851     NM_017924      C14orf119
48  chr14   21925576       24469851     NM_018107          RBM23
49  chr14   21925576       24469851     NM_019852         METTL3
50  chr14   21925576       24469851     NM_020834          HOMEZ
51  chr14   21925576       24469851     NM_022060          ABHD4
52  chr14   21925576       24469851     NM_022478          CDH24
53  chr14   21925576       24469851     NM_022789           IL25
56  chr14   21925576       24469851     NM_033400          ZFHX2
57  chr14   21925576       24469851     NM_138460          CMTM5
59  chr14   21925576       24469851     NM_173527           REM2
63  chr14   21925576       24469851     NR_023921      DHRS4-AS1
65  chr14   21925576       24469851     NR_029595        MIR208A
66  chr14   21925576       24469851     NR_030624        MIR208B
67  chr14   21925576       24469851     NR_039856        MIR4707
71  chr14   21925576       24469851     NR_110002   LOC101926933
73  chr14   21925576       24469851     NR_110555   LOC102724814
74  chr14   21925576       24469851     NR_111966          SALL2
76  chr14   21925576       24469851     NR_120599      PRMT5-AS1
77  chr14   21925576       24469851     NR_126491           MHRT
78  chr21   13587617       14746058     NR_026916     ANKRD30BP2
79   chr7  108432395      108611892  NM_001024607        C7orf66,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21783840       22028227  NM_001163380      RAB2B
1   chr14   21783840       22028227  NM_001170629       CHD8
2   chr14   21783840       22028227  NM_001303523       TOX4
3   chr14   21783840       22028227     NM_007192    SUPT16H
4   chr14   21783840       22028227     NM_019852     METTL3
5   chr14   21783840       22028227     NM_020366    RPGRIP1
8   chr14   21783840       22028227     NR_002916     SNORD8
9   chr14   21783840       22028227     NR_003029     SNORD9
10  chr14   21783840       22028227     NR_111966      SALL2
12   chr8    6922819        7127825     NR_027000  LINC00965,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28666785       29974744  NM_001130414         APBA2
1   chr15   28666785       29974744  NM_001282468       GOLGA8M
2   chr15   28666785       29974744     NM_015307      FAM189A1
3   chr15   28666785       29974744     NM_138704        NSMCE3
4   chr15   28666785       29974744     NR_026589       WHAMMP2
5   chr15   28666785       29974744     NR_033351       GOLGA8F
6   chr15   28666785       29974744     NR_033353       GOLGA8G
7   chr15   28666785       29974744     NR_036443       HERC2P9
8   chr15   28666785       29974744     NR_036475  LOC100289656
9   chr15   28666785       29974744     NR_037599     PDCD6IPP2
10  chr15   28666785       29974744     NR_039734     MIR4509-3
12  chr15   28666785       29974744     NR_047567     GOLGA6L7P
13  chr15   28666785       29974744     NR_135221  LOC100130111
14   chr7   81989195       82307460     NM_000722      CACNA2D1
16   chr7  110751539      111928960  NM_001099658         LRRN3
17   chr7  110751539      111928960  NM_001244606        IMMP2L
18   chr7  110751539      111928960     NM_014705         DOCK4
19   chr7  110751539      111928960     NM_021994        ZNF277
21   chr7  110751539      111928960     NR_103806     DOCK4-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18140832       18481590  NM_001282511        NPIPA8
1  chr16   18140832       18481590     NR_103772  LOC100288162
2  chr16   18140832       18481590     NR_106971     MIR6511A4
3  chr16   18140832       18481590     NR_107060     MIR6770-2
4  chr21   13703963       14437925     NR_026916    ANKRD30BP2
5  chr22   17186819       17327319     NM_175878          XKR3
6  chr22   17186819       17327319     NR_003607       HSFY1P1
7  chr22   17186819       17327319     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   83705230       83863425  NM_001142699       DLG2
4   chr14   21784984       21978879  NM_001163380      RAB2B
5   chr14   21784984       21978879  NM_001170629       CHD8
6   chr14   21784984       21978879  NM_001303523       TOX4
7   chr14   21784984       21978879     NM_007192    SUPT16H
8   chr14   21784984       21978879     NM_019852     METTL3
9   chr14   21784984       21978879     NM_020366    RPGRIP1
12  chr14   21784984       21978879     NR_002916     SNORD8
13  chr14   21784984       21978879     NR_003029     SNORD9
14  chr19   21617598       21724304  NM_001001415     ZNF429
15  chr19   21617598       21724304     NR_037194  LINC00664
16   chr4  169239523      169342026  NM_001012967     DDX60L
18   chr4  169239523      169342026     NM_017631      DDX60
19   chr5   63800312       63906767  NM_001029875     RGS7BP,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   55778973       55961519  NM_001142770        PCDH15
3   chr15   28747044       29035311  NM_001282468       GOLGA8M
4   chr15   28747044       29035311     NR_026589       WHAMMP2
5   chr15   28747044       29035311     NR_033351       GOLGA8F
6   chr15   28747044       29035311     NR_033353       GOLGA8G
7   chr15   28747044       29035311     NR_036443       HERC2P9
8   chr15   28747044       29035311     NR_036475  LOC100289656
9   chr15   28747044       29035311     NR_037599     PDCD6IPP2
10  chr15   59931828       60058541  NM_001320674         BNIP2
12  chr15   59931828       60058541  NM_001320929        GTF2A2
15   chr2   25158666       25349833  NM_001198559       DNAJC27
16   chr2   25158666       25349833  NM_001319099         EFR3B
18   chr2   25158666       25349833     NR_034113   DNAJC27-AS1
19   chr2   95432380       95623547     NM_144705         TEKT4
20   chr2   95432380       95623547     NR_003366    ANKRD20A8P
21   chr2   95432380       95623547     NR_037597     LOC442028
22  chr22   32482582       32616415     NM_000343        SLC5A1
23  chr22   32482582       32616415  NM_001010859      C22orf42
24  chr22   32482582       32616415  NM_001098527         RFPL2
29  chr22   32482582       32616415     NM_014227        SLC5A4
30  chr22   32482582       32616415     NR_040114       AP1B1P1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11  131446230      131586325  NM_001048209       NTM
1   chr11  131446230      131586325     NR_126159   NTM-AS1
2   chr14   21945267       22590569  NM_001001912     OR4E2
3   chr14   21945267       22590569  NM_001005465    OR10G3
4   chr14   21945267       22590569  NM_001005466    OR10G2
5   chr14   21945267       22590569  NM_001303523      TOX4
6   chr14   21945267       22590569  NM_001317107     OR4E1
7   chr14   21945267       22590569     NM_019852    METTL3
8   chr14   21945267       22590569     NR_111966     SALL2
10  chr16   76350800       76457259  NM_001322181   CNTNAP4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  185869218      186108681     NM_031935         HMCN1
1   chr13   41387514       41501237     NR_003365       SUGT1P3
2   chr13   41387514       41501237     NR_038259       TPTE2P5
3   chr20    9053372        9169049  NM_001172646         PLCB4
4   chr22   17222539       17607763  NM_001037814          GAB4
5   chr22   17222539       17607763  NM_001163079         CECR6
6   chr22   17222539       17607763  NM_001289905        IL17RA
8   chr22   17222539       17607763     NM_175878          XKR3
9   chr22   17222539       17607763     NR_003607       HSFY1P1
10  chr22   17222539       17607763     NR_015352         CECR7
11  chr22   17222539       17607763     NR_103793  LOC100996342
12  chr22   17222539       17607763     NR_134584  LOC101929350
13   chr6   22091779       22404115     NM_000948           PRL
15   chr6   22091779       22404115     NR_015410        CASC15
16   chr6   22091779       22404115     NR_034143         NBAT1
17   chr6  129275410      129386038  NM_001079823         LAMA2
18   chr7  109553020      109768207     NR_003024       EIF3IP1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   98255959       98475080     NR_024172     LINC00923
1  chr16   16416315       16570234  NM_001282511        NPIPA8
2  chr16   16416315       16570234     NR_036447        PKD1P1
3  chr16   16416315       16570234     NR_103772  LOC100288162
4  chr16   16416315       16570234     NR_106766     MIR6511A1
5  chr16   16416315       16570234     NR_106971     MIR6511A4
6  chr16   16416315       16570234     NR_107060     MIR6770-2
7   chr9    9791906        9893926     NM_002839         PTPRD
8   chr9    9791906        9893926     NR_135135  LOC105375972,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr21   23473677       23604323     NR_038400     LINC00308
1   chr22   17221284       17809122  NM_001037814          GAB4
2   chr22   17221284       17809122  NM_001163079         CECR6
3   chr22   17221284       17809122  NM_001282227         CECR1
5   chr22   17221284       17809122  NM_001289905        IL17RA
6   chr22   17221284       17809122     NM_017829         CECR5
9   chr22   17221284       17809122     NM_175878          XKR3
11  chr22   17221284       17809122     NR_003607       HSFY1P1
12  chr22   17221284       17809122     NR_015352         CECR7
13  chr22   17221284       17809122     NR_024482     CECR5-AS1
14  chr22   17221284       17809122     NR_038398         CECR3
15  chr22   17221284       17809122     NR_103793  LOC100996342
16  chr22   17221284       17809122     NR_134584  LOC101929350
17   chr4   69245876       69526790     NM_001076       UGT2B15
18   chr4   69245876       69526790     NM_001077       UGT2B17
19   chr4   69245876       69526790     NM_014058     TMPRSS11E
20   chr7  110725546      111041624  NM_001099658         LRRN3
21   chr7  110725546      111041624  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21832250       22171896  NM_001001912         OR4E2
1   chr14   21832250       22171896  NM_001005465        OR10G3
2   chr14   21832250       22171896  NM_001005466        OR10G2
3   chr14   21832250       22171896  NM_001163380         RAB2B
4   chr14   21832250       22171896  NM_001170629          CHD8
5   chr14   21832250       22171896  NM_001303523          TOX4
6   chr14   21832250       22171896  NM_001317107         OR4E1
7   chr14   21832250       22171896     NM_007192       SUPT16H
8   chr14   21832250       22171896     NM_019852        METTL3
11  chr14   21832250       22171896     NR_002916        SNORD8
12  chr14   21832250       22171896     NR_003029        SNORD9
13  chr14   21832250       22171896     NR_111966         SALL2
15   chr3    4241057        4373384  NM_001243723        SETMAR
17   chr4   69046027       69223858  NM_001031732        YTHDC1
18   chr4   69046027       69223858     NM_182502     TMPRSS11B
19   chr4   69046027       69223858     NR_015446        FTLP10
20   chr4   69046027       69223858     NR_104048   TMPRSS11BNL
21   chr6  140410677      140657340     NR_037441       MIR3668
22   chr6  140410677      140657340     NR_121622  LOC100507477,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  152426215      152604521     NM_019060      CRCT1
1    chr1  152426215      152604521     NM_032563      LCE3D
2    chr1  152426215      152604521     NM_178431      LCE3A
3    chr1  152426215      152604521     NM_178433      LCE3B
4    chr1  152426215      152604521     NM_178434      LCE3C
5    chr1  152426215      152604521     NM_178435      LCE3E
6    chr1  152426215      152604521     NM_178438      LCE5A
7   chr12   16176224       16378670  NM_001170798    SLC15A5
8   chr12   16176224       16378670  NM_001300779       DERA
9   chr14   21781982       22014794  NM_001163380      RAB2B
10  chr14   21781982       22014794  NM_001170629       CHD8
11  chr14   21781982       22014794  NM_001303523       TOX4
12  chr14   21781982       22014794     NM_007192    SUPT16H
13  chr14   21781982       22014794     NM_019852     METTL3
14  chr14   21781982       22014794     NM_020366    RPGRIP1
17  chr14   21781982       22014794     NR_002916     SNORD8
18  chr14   21781982       22014794     NR_003029     SNORD9
19  chr14   21781982       22014794     NR_111966      SALL2
21   chr2  131938182      132674939  NM_001077637     WTH3DI
22   chr2  131938182      132674939  NM_001083538      POTEE
23   chr2  131938182      132674939  NM_001085365      MZT2A
24   chr2  131938182      132674939  NM_001258304    CCDC74A
25   chr2  131938182      132674939     NM_013310   C2orf27A
26   chr2  131938182      132674939     NM_080386     TUBA3D
27   chr2  131938182      132674939     NM_214461   C2orf27B
28   chr2  131938182      132674939     NR_002826    NOC2LP2
29   chr2  131938182      132674939     NR_026922  LOC150776
30   chr2  131938182      132674939     NR_030728  LOC440910
31   chr2  131938182      132674939     NR_033885     POTEKP
32   chr2  131938182      132674939     NR_036499  LINC01120
33   chr2  131938182      132674939     NR_039945    MIR4784
34   chr2  131938182      132674939     NR_108087  LINC01087
35   chr3  160028124      160425344  NM_001190241      IFT80
37   chr3  160028124      160425344  NM_001288753       SMC4
38   chr3  160028124      160425344     NM_002268      KPNA4
40   chr3  160028124      160425344     NM_025047      ARL14
41   chr3  160028124      160425344     NM_173084     TRIM59
42   chr3  160028124      160425344     NR_003001    SCARNA7
43   chr3  160028124      160425344     NR_029525    MIR16-2
44   chr3  160028124      160425344     NR_029663     MIR15B,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21881584       22102340  NM_001005465    OR10G3
1   chr14   21881584       22102340  NM_001005466    OR10G2
2   chr14   21881584       22102340  NM_001163380     RAB2B
3   chr14   21881584       22102340  NM_001170629      CHD8
4   chr14   21881584       22102340  NM_001303523      TOX4
5   chr14   21881584       22102340     NM_019852    METTL3
8   chr14   21881584       22102340     NR_111966     SALL2
10   chr4  169254393      169426076  NM_001012967    DDX60L
11   chr4  169254393      169426076  NM_001166108     PALLD
13   chr5     154506         315798  NM_001080478   LRRC14B
14   chr5     154506         315798  NM_001242412      AHRR
15   chr5     154506         315798     NM_004168      SDHA
16   chr5     154506         315798     NM_013232     PDCD6
17   chr5     154506         315798     NM_052909  PLEKHG4B
18   chr5     154506         315798     NM_145265   CCDC127
20   chr5     154506         315798     NR_104613     HRAT5
21   chr7    3840038        4335593  NM_001079653      SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143710045      144694432  NM_001123068       PPIAL4G
1    chr1  143710045      144694432  NM_001135789       PPIAL4C
2    chr1  143710045      144694432  NM_001277444         NBPF9
3    chr1  143710045      144694432  NM_001278267        NBPF20
4    chr1  143710045      144694432  NM_001287385        FAM72C
5    chr1  143710045      144694432  NM_001345942        FAM72D
9    chr1  143710045      144694432     NR_003242        PFN1P2
10   chr1  143710045      144694432     NR_024511     LINC00623
12   chr1  143710045      144694432     NR_102405         NBPF8
13   chr1  143710045      144694432     NR_104014     LINC01138
14   chr1  143710045      144694432     NR_111930  LOC100132057
15   chr1  143710045      144694432     NR_111953     LINC00869
17  chr14   21567574       21814237  NM_001004731        OR5AU1
18  chr14   21567574       21814237  NM_001102454        ZNF219
19  chr14   21567574       21814237  NM_001146683       TMEM253
20  chr14   21567574       21814237     NM_020366       RPGRIP1
21  chr14   21567574       21814237     NM_031314        HNRNPC
22  chr14   21567574       21814237     NR_038970     LINC00641
24  chr22   17167794       17303112     NM_175878          XKR3
25  chr22   17167794       17303112     NR_134584  LOC101929350
26  chr22   20098764       20289402  NM_001190326         DGCR8
27  chr22   20098764       20289402  NM_001243537       CCDC188
28  chr22   20098764       20289402  NM_001278639        RANBP1
31  chr22   20098764       20289402     NM_013373        ZDHHC8
32  chr22   20098764       20289402     NM_022727        TRMT2A
33  chr22   20098764       20289402     NM_023004         RTN4R
34  chr22   20098764       20289402     NR_026919     LINC00896
35  chr22   20098764       20289402     NR_031618       MIR1286
36  chr22   20098764       20289402     NR_038460     LOC284865
37  chr22   20098764       20289402     NR_106874       MIR6816
38   chr6  162309862      162599896     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21874921       22372777  NM_001001912         OR4E2
1   chr14   21874921       22372777  NM_001005465        OR10G3
2   chr14   21874921       22372777  NM_001005466        OR10G2
3   chr14   21874921       22372777  NM_001163380         RAB2B
4   chr14   21874921       22372777  NM_001170629          CHD8
5   chr14   21874921       22372777  NM_001303523          TOX4
6   chr14   21874921       22372777  NM_001317107         OR4E1
7   chr14   21874921       22372777     NM_019852        METTL3
10  chr14   21874921       22372777     NR_111966         SALL2
12   chr4   47944366       48159692     NM_000087         CNGA1
14   chr4   47944366       48159692     NM_003215           TEC
15   chr4   47944366       48159692     NM_003328           TXK
16   chr4   47944366       48159692     NM_207330        NIPAL1
17   chr4   47944366       48159692     NR_125879  LOC101927157
18   chr6   91022282       91298788     NM_145332        MAP3K7
19   chr6   91022282       91298788     NR_039671       MIR4464
20   chr9    4509682        4985097  NM_001039395       SPATA6L
21   chr9    4509682        4985097  NM_001199853           AK3
24   chr9    4509682        4985097  NM_001286699          RCL1
26   chr9    4509682        4985097  NM_001322194          JAK2
27   chr9    4509682        4985097     NM_004170        SLC1A1
29   chr9    4509682        4985097     NM_017913       CDC37L1
30   chr9    4509682        4985097     NM_203453         PLPP6
31   chr9    4509682        4985097     NR_029836      MIR101-2
32   chr9    4509682        4985097     NR_121597   CDC37L1-AS1
33   chr9   28641242       29019097  NM_001258282        LINGO2
35   chr9   28641242       29019097     NR_030597        MIR876
36   chr9   28641242       29019097     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   49144140       49405385  NM_001302082      BEND5
1    chr1   49144140       49405385  NM_001323575      AGBL4
2   chr22   19051824       19336367  NM_001184781      DGCR2
3   chr22   19051824       19336367  NM_001256534    SLC25A1
4   chr22   19051824       19336367     NM_001835     CLTCL1
5   chr22   19051824       19336367     NM_003325       HIRA
6   chr22   19051824       19336367     NM_005315       GSC2
8   chr22   19051824       19336367     NM_022719     DGCR14
9   chr22   19051824       19336367     NM_053006      TSSK2
10  chr22   19051824       19336367     NR_103767  LINC01311
11   chr7   24270420       24675215     NM_000905        NPY
12   chr7   24270420       24675215     NM_016447       MPP6
13   chr7  110628901      110894345  NM_001099658      LRRN3
14   chr7  110628901      110894345  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr14   55643809       55821640     NM_014750             DLGAP5
1   chr14   55643809       55821640     NM_017943             FBXO34
3   chr20   14623914       14880375     NM_080676            MACROD2
4   chr20   14623914       14880375     NR_037841        MACROD2-AS1
5   chr22   17134095       17593877  NM_001037814               GAB4
6   chr22   17134095       17593877  NM_001289905             IL17RA
7   chr22   17134095       17593877     NM_175878               XKR3
8   chr22   17134095       17593877     NR_003607            HSFY1P1
9   chr22   17134095       17593877     NR_015352              CECR7
10  chr22   17134095       17593877     NR_040115  ANKRD62P1-PARP4P3
11  chr22   17134095       17593877     NR_134584       LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28640460       29204982  NM_001282468       GOLGA8M
1   chr15   28640460       29204982     NR_026589       WHAMMP2
2   chr15   28640460       29204982     NR_033351       GOLGA8F
3   chr15   28640460       29204982     NR_033353       GOLGA8G
4   chr15   28640460       29204982     NR_036443       HERC2P9
5   chr15   28640460       29204982     NR_036475  LOC100289656
6   chr15   28640460       29204982     NR_037599     PDCD6IPP2
7   chr15   28640460       29204982     NR_039734     MIR4509-3
9   chr15   28640460       29204982     NR_047567     GOLGA6L7P
10  chr19   33704603       33819820  NM_001285829         CEBPA
11  chr19   33704603       33819820     NM_019849       SLC7A10
12  chr19   33704603       33819820     NR_026887     CEBPA-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21882794       22019427  NM_001163380         RAB2B
1   chr14   21882794       22019427  NM_001170629          CHD8
2   chr14   21882794       22019427  NM_001303523          TOX4
3   chr14   21882794       22019427     NM_019852        METTL3
6   chr14   21882794       22019427     NR_111966         SALL2
8   chr15   28608549       29126841  NM_001282468       GOLGA8M
9   chr15   28608549       29126841     NR_026589       WHAMMP2
10  chr15   28608549       29126841     NR_033351       GOLGA8F
12  chr15   28608549       29126841     NR_033353       GOLGA8G
14  chr15   28608549       29126841     NR_036443       HERC2P9
15  chr15   28608549       29126841     NR_036475  LOC100289656
16  chr15   28608549       29126841     NR_037599     PDCD6IPP2
17  chr15   28608549       29126841     NR_039734     MIR4509-3
19  chr15   28608549       29126841     NR_047567     GOLGA6L7P
20   chr2   97212242       97329274  NM_001115016        KANSL3
21   chr2   97212242       97329274  NM_001293083        FER1L5
22   chr2   97212242       97329274  NM_001319085        ARID5A
25  chr21   30139293       30278191     NM_013240        N6AMT1
27   chr6   95416417       96037936     NM_024641         MANEA
28   chr6   95416417       96037936     NR_047502     MANEA-AS1
30   chr7   29476860       29578318  NM_001293069          CHN2
35   chr7   63919898       64033586  NM_001130022        ZNF680,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr15   20660948       20801013  NM_001145004       GOLGA6L6
1   chr15   20660948       20801013     NR_027411       GOLGA8CP
2   chr15   20660948       20801013     NR_036432        HERC2P3
3   chr15   20935808       21045132  NM_001277303         POTEB2
4   chr15   20935808       21045132     NM_207355         POTEB3
5   chr15   20935808       21045132     NR_027992         NBEAP1
6   chr15   20935808       21045132     NR_036062      MIR3118-2
7   chr16   15201633       16648417  NM_001004067          NOMO3
8   chr16   15201633       16648417  NM_001040113          MYH11
9   chr16   15201633       16648417  NM_001079528          ABCC6
10  chr16   15201633       16648417  NM_001128423         MPV17L
11  chr16   15201633       16648417  NM_001142469       C16orf45
12  chr16   15201633       16648417  NM_001143979           NDE1
14  chr16   15201633       16648417  NM_001184998       KIAA0430
15  chr16   15201633       16648417  NM_001277325         NPIPA5
16  chr16   15201633       16648417  NM_001282511         NPIPA8
17  chr16   15201633       16648417  NM_001285449         PDXDC1
19  chr16   15201633       16648417     NM_004996          ABCC1
22  chr16   15201633       16648417     NR_030159         MIR484
23  chr16   15201633       16648417     NR_036140      MIR3179-1
24  chr16   15201633       16648417     NR_036141      MIR3180-1
25  chr16   15201633       16648417     NR_036142      MIR3180-2
26  chr16   15201633       16648417     NR_036447         PKD1P1
27  chr16   15201633       16648417     NR_037466      MIR3180-4
28  chr16   15201633       16648417     NR_103772   LOC100288162
29  chr16   15201633       16648417     NR_106761        MIR6506
30  chr16   15201633       16648417     NR_106766      MIR6511A1
31  chr16   15201633       16648417     NR_106775      MIR6511B1
32  chr16   15201633       16648417     NR_106965      MIR6511B2
33  chr16   15201633       16648417     NR_106971      MIR6511A4
34  chr16   15201633       16648417     NR_107060      MIR6770-2
35  chr16   15201633       16648417     NR_123721  PKD1P6-NPIPP1
37  chr16   15201633       16648417     NR_125434   LOC100505915
38  chr16   15201633       16648417     NR_128713      MIR3670-4
39  chr16   15201633       16648417     NR_130755          FOPNL
40   chr3  162843390      162968405     NR_033945      LINC01192
41   chr4  128746430      128856528  NM_001190801           PLK4
42   chr4  128746430      128856528  NM_001317381         HSPA4L
46   chr4  128746430      128856528     NM_152778          MFSD8
47   chr7  145958849      146068535     NM_014141        CNTNAP2
48   chr9  137540069      137717093     NM_000093         COL5A1
49   chr9  137540069      137717093     NR_103451   LOC101448202
50   chr9  137540069      137717093     NR_138049     COL5A1-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   95788704       95899546     NM_032427     MAML2
1   chr14   21862345       22109236  NM_001005465    OR10G3
2   chr14   21862345       22109236  NM_001005466    OR10G2
3   chr14   21862345       22109236  NM_001163380     RAB2B
4   chr14   21862345       22109236  NM_001170629      CHD8
5   chr14   21862345       22109236  NM_001303523      TOX4
6   chr14   21862345       22109236     NM_019852    METTL3
9   chr14   21862345       22109236     NR_002916    SNORD8
10  chr14   21862345       22109236     NR_111966     SALL2
12   chr7  110763614      110962867  NM_001099658     LRRN3
13   chr7  110763614      110962867  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21748119       21944777  NM_001163380     RAB2B
1  chr14   21748119       21944777  NM_001170629      CHD8
2  chr14   21748119       21944777     NM_007192   SUPT16H
3  chr14   21748119       21944777     NM_020366   RPGRIP1
6  chr14   21748119       21944777     NR_002916    SNORD8
7  chr14   21748119       21944777     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21822651       22118466  NM_001005465    OR10G3
1   chr14   21822651       22118466  NM_001005466    OR10G2
2   chr14   21822651       22118466  NM_001163380     RAB2B
3   chr14   21822651       22118466  NM_001170629      CHD8
4   chr14   21822651       22118466  NM_001303523      TOX4
5   chr14   21822651       22118466     NM_007192   SUPT16H
6   chr14   21822651       22118466     NM_019852    METTL3
9   chr14   21822651       22118466     NR_002916    SNORD8
10  chr14   21822651       22118466     NR_003029    SNORD9
11  chr14   21822651       22118466     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21751120       21869136  NM_001170629          CHD8
1   chr14   21751120       21869136     NM_007192       SUPT16H
2   chr14   21751120       21869136     NM_020366       RPGRIP1
4   chr14   21751120       21869136     NR_002916        SNORD8
5   chr14   21751120       21869136     NR_003029        SNORD9
6    chr4   69311315       70090363     NM_001073       UGT2B11
7    chr4   69311315       70090363     NM_001075       UGT2B10
9    chr4   69311315       70090363     NM_001076       UGT2B15
10   chr4   69311315       70090363     NM_001077       UGT2B17
11   chr4   69311315       70090363  NM_001330719        UGT2B7
12   chr4   69311315       70090363     NM_014058     TMPRSS11E
13   chr4   69311315       70090363     NM_024743        UGT2A3
14   chr4   69311315       70090363     NR_136191  LOC105377267
15   chr8     216355         396339     NM_012173        FBXO25
16   chr8     216355         396339     NR_103537        FAM87A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16317232       16488243  NM_001004067         NOMO3
1   chr16   16317232       16488243  NM_001079528         ABCC6
3   chr16   16317232       16488243  NM_001282511        NPIPA8
4   chr16   16317232       16488243     NR_036140     MIR3179-1
5   chr16   16317232       16488243     NR_036141     MIR3180-1
6   chr16   16317232       16488243     NR_036142     MIR3180-2
7   chr16   16317232       16488243     NR_036447        PKD1P1
8   chr16   16317232       16488243     NR_103772  LOC100288162
9   chr16   16317232       16488243     NR_106766     MIR6511A1
10  chr16   16317232       16488243     NR_106971     MIR6511A4
11  chr16   16317232       16488243     NR_107060     MIR6770-2
12  chr16   16317232       16488243     NR_128713     MIR3670-4
13   chr3  159997068      160145135  NM_001190241         IFT80
15   chr3  159997068      160145135  NM_001288753          SMC4
17   chr3  159997068      160145135     NR_029525       MIR16-2
18   chr3  159997068      160145135     NR_029663        MIR15B
19   chr4    8636087        8852083  NM_001306142          HMX1
20   chr7   88912076       89040065     NM_181646       ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   17259260       18062492  NM_001037814          GAB4
1   chr22   17259260       18062492  NM_001163079         CECR6
2   chr22   17259260       18062492  NM_001282227         CECR1
4   chr22   17259260       18062492  NM_001289905        IL17RA
5   chr22   17259260       18062492  NM_001290046         CECR2
7   chr22   17259260       18062492  NM_001303484      SLC25A18
8   chr22   17259260       18062492     NM_017829         CECR5
11  chr22   17259260       18062492     NM_175878          XKR3
13  chr22   17259260       18062492     NR_003607       HSFY1P1
14  chr22   17259260       18062492     NR_015352         CECR7
15  chr22   17259260       18062492     NR_024482     CECR5-AS1
16  chr22   17259260       18062492     NR_038398         CECR3
17  chr22   17259260       18062492     NR_103793  LOC100996342
18   chr4   94129637       94230904     NM_001510         GRID2
19   chr6   94292815       94523594     NR_015362          TSG1
20   chr6  146472581      146728391  NM_001278064          GRM1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89097337       89233770  NM_001143837          NOX4
6   chr16   16378929       16555266  NM_001004067         NOMO3
7   chr16   16378929       16555266  NM_001282511        NPIPA8
8   chr16   16378929       16555266     NR_036140     MIR3179-1
9   chr16   16378929       16555266     NR_036141     MIR3180-1
10  chr16   16378929       16555266     NR_036142     MIR3180-2
11  chr16   16378929       16555266     NR_036447        PKD1P1
12  chr16   16378929       16555266     NR_103772  LOC100288162
13  chr16   16378929       16555266     NR_106766     MIR6511A1
14  chr16   16378929       16555266     NR_106971     MIR6511A4
15  chr16   16378929       16555266     NR_107060     MIR6770-2
16  chr16   16378929       16555266     NR_128713     MIR3670-4
17   chr2   51985126       52333437     NR_135237     LOC730100
18   chr7   21211076       21527002  NM_001326542           SP4
19   chr7   21211076       21527002     NR_031594       MIR1183
21   chr8    4157138        4314749     NM_033225         CSMD1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21678743       21828627     NM_007192   SUPT16H
1  chr14   21678743       21828627     NM_020366   RPGRIP1
2  chr14   21678743       21828627     NM_031314    HNRNPC
3   chr3   60328794       60609782  NM_001320899      FHIT
4   chr3   60328794       60609782     NR_128708  MIR548BB
5   chr7   64114718       64250663  NM_001282360    ZNF107
7   chr7   64114718       64250663     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143523783      145117845  NM_001002810       PDE4DIP
3    chr1  143523783      145117845  NM_001123068       PPIAL4G
4    chr1  143523783      145117845  NM_001135789       PPIAL4C
9    chr1  143523783      145117845  NM_001277444         NBPF9
10   chr1  143523783      145117845  NM_001278267        NBPF20
11   chr1  143523783      145117845  NM_001287385        FAM72C
12   chr1  143523783      145117845  NM_001345942        FAM72D
15   chr1  143523783      145117845     NM_004892        SEC22B
18   chr1  143523783      145117845     NR_003242        PFN1P2
19   chr1  143523783      145117845     NR_024511     LINC00623
21   chr1  143523783      145117845     NR_102405         NBPF8
22   chr1  143523783      145117845     NR_104014     LINC01138
23   chr1  143523783      145117845     NR_106967       MIR6077
24   chr1  143523783      145117845     NR_111930  LOC100132057
25   chr1  143523783      145117845     NR_111953     LINC00869
27  chr11   31414407       31526469  NM_001304274        IMMP1L
28  chr11   31414407       31526469     NM_181706       DNAJC24
29  chr19   21686069       21865797  NM_001001415        ZNF429
30   chr3   37821032       38114119     NM_002207         ITGA9
31   chr3   37821032       38114119     NM_005808        CTDSPL
32   chr3   37821032       38114119     NM_006225         PLCD1
33   chr3   37821032       38114119     NM_007337         DLEC1
34   chr3   37821032       38114119     NM_015873          VILL
36   chr3   37821032       38114119     NR_029499       MIR26A1
37   chr3   37821032       38114119     NR_110531     ITGA9-AS1
39   chr7   75833130       75974243  NM_001110199         SRRM3
40   chr7   75833130       75974243     NM_001540         HSPB1
41   chr7   75833130       75974243     NM_012479         YWHAG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18491815       19162304  NM_001004060         NOMO2
1   chr16   18491815       19162304     NM_001019        RPS15A
2   chr16   18491815       19162304  NM_001160364          TMC7
3   chr16   18491815       19162304  NM_001190983          COQ7
5   chr16   18491815       19162304  NM_001313858       ARL6IP1
7   chr16   18491815       19162304     NM_015092          SMG1
10  chr16   18491815       19162304     NR_003569       ABCC6P1
11  chr16   18491815       19162304     NR_028028      ITPRIPL2
12  chr16   18491815       19162304     NR_036140     MIR3179-1
13  chr16   18491815       19162304     NR_036142     MIR3180-2
14  chr16   18491815       19162304     NR_036144     MIR3180-3
15  chr16   18491815       19162304     NR_037442     MIR3670-1
16  chr16   18491815       19162304     NR_119379  LOC102723385
18   chr5   17666139       17826670     NR_134286     LOC646241
20   chr7   63922090       64029464  NM_001130022        ZNF680,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28793334       30463980  NM_001130414         APBA2
1   chr15   28793334       30463980  NM_001282468       GOLGA8M
2   chr15   28793334       30463980  NM_001282472       GOLGA8J
3   chr15   28793334       30463980  NM_001301025          TJP1
6   chr15   28793334       30463980     NM_015307      FAM189A1
7   chr15   28793334       30463980     NM_138704        NSMCE3
8   chr15   28793334       30463980     NR_026589       WHAMMP2
9   chr15   28793334       30463980     NR_026859        ULK4P3
10  chr15   28793334       30463980     NR_033933       GOLGA8T
11  chr15   28793334       30463980     NR_036443       HERC2P9
12  chr15   28793334       30463980     NR_036475  LOC100289656
13  chr15   28793334       30463980     NR_037599     PDCD6IPP2
14  chr15   28793334       30463980     NR_047567     GOLGA6L7P
15  chr15   28793334       30463980     NR_135221  LOC100130111
16  chr19    1101485        1644775     NM_000156          GAMT
17  chr19    1101485        1644775     NM_000455         STK11
18  chr19    1101485        1644775  NM_001001975         ATP5D
19  chr19    1101485        1644775     NM_001018         RPS15
20  chr19    1101485        1644775  NM_001039848          GPX4
21  chr19    1101485        1644775  NM_001100122         SBNO2
22  chr19    1101485        1644775  NM_001136139          TCF3
23  chr19    1101485        1644775  NM_001174118         MEX3D
24  chr19    1101485        1644775  NM_001243079          PLK5
25  chr19    1101485        1644775     NM_001280         CIRBP
26  chr19    1101485        1644775  NM_001281454          MBD3
30  chr19    1101485        1644775     NM_001405         EFNA2
33  chr19    1101485        1644775     NM_005883          APC2
34  chr19    1101485        1644775     NM_006830        UQCR11
36  chr19    1101485        1644775     NM_017573         PCSK4
37  chr19    1101485        1644775     NM_017914      C19orf24
38  chr19    1101485        1644775     NM_024407        NDUFS7
39  chr19    1101485        1644775     NM_032853          MUM1
40  chr19    1101485        1644775     NM_138393         REEP6
42  chr19    1101485        1644775     NM_152482      C19orf25
43  chr19    1101485        1644775     NM_152769         CBARP
44  chr19    1101485        1644775     NM_170711        DAZAP1
45  chr19    1101485        1644775     NM_177401          MIDN
46  chr19    1101485        1644775     NM_213604      ADAMTSL5
49  chr19    1101485        1644775     NR_027271     CIRBP-AS1
50   chr6  162447513      162793182     NM_013988         PARK2
51   chr7  110690998      110802014  NM_001099658         LRRN3
52   chr7  110690998      110802014  NM_001244606        IMMP2L
54   chr9   41865995       42138434     NR_003670        FGF7P3
55   chr9   41865995       42138434     NR_015363         GLIDR
58   chr9   41865995       42138434     NR_126048  LOC102724238
59   chr9   41865995       42138434     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63092217       64003093     NR_047029     LINC00448
3   chr13   63092217       64003093     NR_126409     LINC00376
4   chr16   16280536       16766945  NM_001004067         NOMO3
5   chr16   16280536       16766945  NM_001079528         ABCC6
7   chr16   16280536       16766945  NM_001282511        NPIPA8
8   chr16   16280536       16766945     NR_036140     MIR3179-1
9   chr16   16280536       16766945     NR_036141     MIR3180-1
10  chr16   16280536       16766945     NR_036142     MIR3180-2
11  chr16   16280536       16766945     NR_036447        PKD1P1
12  chr16   16280536       16766945     NR_103772  LOC100288162
13  chr16   16280536       16766945     NR_106766     MIR6511A1
14  chr16   16280536       16766945     NR_106971     MIR6511A4
15  chr16   16280536       16766945     NR_107060     MIR6770-2
16  chr16   16280536       16766945     NR_128713     MIR3670-4
17  chr20   14763428       14944683     NM_080676       MACROD2
18  chr20   14763428       14944683     NR_037841   MACROD2-AS1
20   chr7    4054389        4213747  NM_001079653          SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr19   57487221       57719272  NM_001012729          DUXA
1   chr19   57487221       57719272     NM_003417        ZNF264
2   chr19   57487221       57719272     NM_020903         USP29
3   chr19   57487221       57719272     NM_052882          ZIM3
4   chr22   17262726       18851331  NM_001037814          GAB4
5   chr22   17262726       18851331  NM_001122731        MICAL3
6   chr22   17262726       18851331  NM_001127649         PEX26
8   chr22   17262726       18851331  NM_001163079         CECR6
9   chr22   17262726       18851331  NM_001193414         TUBA8
11  chr22   17262726       18851331  NM_001244567           BID
14  chr22   17262726       18851331  NM_001270733       BCL2L13
15  chr22   17262726       18851331  NM_001282227         CECR1
17  chr22   17262726       18851331  NM_001288707  LOC101929372
18  chr22   17262726       18851331  NM_001289905        IL17RA
19  chr22   17262726       18851331  NM_001290046         CECR2
21  chr22   17262726       18851331  NM_001303484      SLC25A18
22  chr22   17262726       18851331     NM_001696      ATP6V1E1
25  chr22   17262726       18851331     NM_017414         USP18
26  chr22   17262726       18851331     NM_017829         CECR5
29  chr22   17262726       18851331     NM_175878          XKR3
31  chr22   17262726       18851331     NR_003267         GGT3P
32  chr22   17262726       18851331     NR_003607       HSFY1P1
33  chr22   17262726       18851331     NR_015352         CECR7
34  chr22   17262726       18851331     NR_024417      FLJ41941
35  chr22   17262726       18851331     NR_024482     CECR5-AS1
36  chr22   17262726       18851331     NR_030378        MIR648
37  chr22   17262726       18851331     NR_036168     MIR3198-1
38  chr22   17262726       18851331     NR_038398         CECR3
40  chr22   17262726       18851331     NR_103718     LINC00528
41  chr22   17262726       18851331     NR_103793  LOC100996342
42  chr22   17262726       18851331     NR_135922  LOC102725072
43  chr22   17262726       18851331     NR_136561     LOC642643
44  chr22   17262726       18851331     NR_136570  LOC100996415
45  chr22   17262726       18851331     NR_136574  LOC105379550
46   chr3  197166320      198509429     NM_000996        RPL35A
47   chr3  197166320      198509429  NM_001011537        FYTTD1
48   chr3  197166320      198509429  NM_001145248       FAM157A
49   chr3  197166320      198509429  NM_001145642         RUBCN
51   chr3  197166320      198509429  NM_001323027          IQCG
56   chr3  197166320      198509429     NM_032773         LRCH3
57   chr3  197166320      198509429     NM_033029          LMLN
58   chr3  197166320      198509429     NM_203314          BDH1
60   chr3  197166320      198509429     NR_003266     LOC220729
61   chr3  197166320      198509429     NR_003291     ANKRD18DP
63   chr3  197166320      198509429     NR_030627        MIR922
64   chr3  197166320      198509429     NR_046669      LMLN-AS1
65   chr4   93791022       93963683     NM_001510         GRID2
66   chr5   99339336      101834265  NM_001289004       SLCO6A1
67   chr5   99339336      101834265     NM_005668       ST8SIA4
69   chr5   99339336      101834265     NM_180991       SLCO4C1
70   chr5   99339336      101834265     NM_198507       FAM174A
71   chr5   99339336      101834265     NR_027503  LOC100133050
72   chr5   99339336      101834265     NR_031686       MIR548P
73   chr9   20791673       20910299     NM_017794         FOCAD
74   chr9   28657269       28775342  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108405225      108530770     NM_006113          VAV3
1    chr1  108405225      108530770     NR_046653      VAV3-AS1
2    chr1  108405225      108530770     NR_107006       MIR7852
3   chr14   21780817       22392890  NM_001001912         OR4E2
4   chr14   21780817       22392890  NM_001005465        OR10G3
5   chr14   21780817       22392890  NM_001005466        OR10G2
6   chr14   21780817       22392890  NM_001163380         RAB2B
7   chr14   21780817       22392890  NM_001170629          CHD8
8   chr14   21780817       22392890  NM_001303523          TOX4
9   chr14   21780817       22392890  NM_001317107         OR4E1
10  chr14   21780817       22392890     NM_007192       SUPT16H
11  chr14   21780817       22392890     NM_019852        METTL3
12  chr14   21780817       22392890     NM_020366       RPGRIP1
15  chr14   21780817       22392890     NR_002916        SNORD8
16  chr14   21780817       22392890     NR_003029        SNORD9
17  chr14   21780817       22392890     NR_111966         SALL2
19  chr18   63481209       63748200  NM_001317214          CDH7
22   chr9   95677688       96209138  NM_001083536          FGD3
23   chr9   95677688       96209138  NM_001098808      C9orf129
24   chr9   95677688       96209138  NM_001282394          WNK2
26   chr9   95677688       96209138  NM_001287005         SUSD3
27   chr9   95677688       96209138  NM_001322224     FAM120AOS
28   chr9   95677688       96209138     NM_004148         NINJ1
32   chr9   95677688       96209138     NR_121565  LOC101927954
33   chr9   95677688       96209138     NR_134468        CARD19,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11    6728390        6925698  NM_001004460       OR10A2
1   chr11    6728390        6925698  NM_001004489       OR2AG1
2   chr11    6728390        6925698  NM_001004490       OR2AG2
3   chr11    6728390        6925698     NM_003696        OR6A2
4   chr11    6728390        6925698     NM_003700        OR2D2
5   chr11    6728390        6925698     NM_178168       OR10A5
6   chr11    6728390        6925698     NM_207186       OR10A4
7   chr11    6728390        6925698     NR_003945       GVINP1
8   chr16   88485039       88631404  NM_001127464       ZNF469
9   chr16   88485039       88631404     NM_153813        ZFPM1
10  chr16   88485039       88631404     NR_049821      MIR5189
11  chr20   14634920       15071417     NM_080676      MACROD2
12  chr20   14634920       15071417     NR_037841  MACROD2-AS1
14   chr7  110600412      110725508  NM_001244606       IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87452871       87683763  NM_001134492        HS2ST1
1    chr1   87452871       87683763  NM_001290053  LOC101927844
3    chr1   87452871       87683763     NR_026985     LINC01140
6   chr10   96464607       96617124     NM_000769       CYP2C19
7   chr10   96464607       96617124     NM_000772       CYP2C18
8   chr14   21731111       21866361  NM_001170629          CHD8
9   chr14   21731111       21866361     NM_007192       SUPT16H
10  chr14   21731111       21866361     NM_020366       RPGRIP1
12  chr14   21731111       21866361     NM_031314        HNRNPC
13  chr14   21731111       21866361     NR_002916        SNORD8
14  chr14   21731111       21866361     NR_003029        SNORD9
15  chr14   21948000       22180728  NM_001001912         OR4E2
16  chr14   21948000       22180728  NM_001005465        OR10G3
17  chr14   21948000       22180728  NM_001005466        OR10G2
18  chr14   21948000       22180728  NM_001303523          TOX4
19  chr14   21948000       22180728  NM_001317107         OR4E1
20  chr14   21948000       22180728     NM_019852        METTL3
21  chr14   21948000       22180728     NR_111966         SALL2
23  chr19   34596897       34881319  NM_001289789           GPI
26  chr19   34596897       34881319     NM_014686      KIAA0355
27  chr19   34596897       34881319     NM_015578        LSM14A
28   chr2  110157152      110257908  NM_001099289        SH3RF3
29   chr6  161893411      161999330     NM_013988         PARK2
30   chr6  161893411      161999330     NR_134594  LOC105378098
31   chr9  116787986      116986640  NM_001318041        ZNF618
32   chr9  116787986      116986640     NM_001633          AMBP
33   chr9  116787986      116986640     NM_032888       COL27A1
34   chr9  116787986      116986640     NM_138424         KIF12
35   chr9  116787986      116986640     NR_030255        MIR455,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12812871       12968573  NM_001009611       PRAMEF4
1    chr1   12812871       12968573  NM_001013631      HNRNPCL1
2    chr1   12812871       12968573  NM_001080830      PRAMEF12
3    chr1   12812871       12968573  NM_001146181      HNRNPCL3
4    chr1   12812871       12968573  NM_001146344      PRAMEF11
5    chr1   12812871       12968573  NM_001294139       PRAMEF1
6    chr1   12812871       12968573  NM_001302551      HNRNPCL4
8    chr1   12812871       12968573     NM_023014       PRAMEF2
9    chr1   12812871       12968573     NM_152290      C1orf158
10  chr12   29062890       29544634  NM_001271783          FAR2
12  chr12   29062890       29544634     NM_016570        ERGIC2
13  chr12   29062890       29544634     NR_073171     OVCH1-AS1
15  chr12   29062890       29544634     NR_103860  LOC100506606
16  chr13   41389044       41541107  NM_001145353          ELF1
18  chr13   41389044       41541107     NR_003365       SUGT1P3
19  chr13   41389044       41541107     NR_038259       TPTE2P5
20  chr14   21791297       21948308  NM_001163380         RAB2B
21  chr14   21791297       21948308  NM_001170629          CHD8
22  chr14   21791297       21948308  NM_001303523          TOX4
23  chr14   21791297       21948308     NM_007192       SUPT16H
24  chr14   21791297       21948308     NM_020366       RPGRIP1
27  chr14   21791297       21948308     NR_002916        SNORD8
28  chr14   21791297       21948308     NR_003029        SNORD9
29  chr19   47799042       47917122  NM_001009813         MEIS3
30  chr19   47799042       47917122  NM_001271749         C5AR2
34  chr19   47799042       47917122     NM_001736         C5AR1
35  chr19   47799042       47917122     NM_014681         DHX34,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   21947486       22213035  NM_001001912      OR4E2
1  chr14   21947486       22213035  NM_001005465     OR10G3
2  chr14   21947486       22213035  NM_001005466     OR10G2
3  chr14   21947486       22213035  NM_001303523       TOX4
4  chr14   21947486       22213035  NM_001317107      OR4E1
5  chr14   21947486       22213035     NM_019852     METTL3
6  chr14   21947486       22213035     NR_111966      SALL2
8   chr5   12442423       12581351     NR_033383  LINC01194
9   chr7  110500822      110697941  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr12   27171795       27284096  NM_001080406       C12orf71
1   chr12   27171795       27284096  NM_001271811          MED21
2   chr16   21542686       21791681  NM_001077180         METTL9
3   chr16   21542686       21791681  NM_001161683           OTOA
5   chr16   21542686       21791681     NM_005849          IGSF6
8   chr16   21542686       21791681     NR_110930   LOC101927814
9   chr16   29460907       29791547  NM_001014999          SLX1A
10  chr16   29460907       29791547  NM_001017390        SULT1A4
11  chr16   29460907       29791547  NM_001030288            SPN
12  chr16   29460907       29791547  NM_001031827          BOLA2
13  chr16   29460907       29791547  NM_001318249           QPRT
14  chr16   29460907       29791547  NM_001320622   BOLA2-SMG1P6
17  chr16   29460907       29791547     NM_152338           ZG16
18  chr16   29460907       29791547     NM_175900       C16orf54
19  chr16   29460907       29791547     NR_002454      LOC606724
20  chr16   29460907       29791547     NR_002556      LOC388242
21  chr16   29460907       29791547     NR_037608  SLX1A-SULT1A3
22  chr16   29460907       29791547     NR_049833      MIR3680-2
24  chr16   29460907       29791547     NR_135305         SMG1P2
26   chr9   25480434       26068272  NM_001004125          TUSC1
27   chr9   25480434       26068272  NM_001004352   LOC100506422
28   chr9   25480434       26068272     NR_121604      LINC01241,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21839265       21951419  NM_001163380     RAB2B
1   chr14   21839265       21951419  NM_001170629      CHD8
2   chr14   21839265       21951419  NM_001303523      TOX4
3   chr14   21839265       21951419     NM_007192   SUPT16H
6   chr14   21839265       21951419     NR_002916    SNORD8
7   chr14   21839265       21951419     NR_003029    SNORD9
8    chr5  167265568      167369851  NM_001080428     TENM2
10   chr6  162219897      162505030     NM_013988     PARK2
11   chr6  162644192      162806328     NM_013988     PARK2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  144819042      145053765  NM_001002810   PDE4DIP
7    chr1  144819042      145053765  NM_001277444     NBPF9
8    chr1  144819042      145053765  NM_001278267    NBPF20
10   chr1  144819042      145053765     NR_102405     NBPF8
11   chr1  244988180      245101090  NM_001312871     COX20
13   chr1  244988180      245101090     NM_004501    HNRNPU
15   chr1  244988180      245101090     NR_132782  SNORA100
16  chr14   21822895       22083187  NM_001005465    OR10G3
17  chr14   21822895       22083187  NM_001163380     RAB2B
18  chr14   21822895       22083187  NM_001170629      CHD8
19  chr14   21822895       22083187  NM_001303523      TOX4
20  chr14   21822895       22083187     NM_007192   SUPT16H
21  chr14   21822895       22083187     NM_019852    METTL3
24  chr14   21822895       22083187     NR_002916    SNORD8
25  chr14   21822895       22083187     NR_003029    SNORD9
26  chr14   21822895       22083187     NR_111966     SALL2
28  chr15   52932003       53148457  NM_001286495   FAM214A
29  chr15   52932003       53148457     NM_004498   ONECUT1
32   chr7   75811312       75962288  NM_001110199     SRRM3
33   chr7   75811312       75962288     NM_001540     HSPB1
34   chr7   75811312       75962288     NM_012479     YWHAG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12776881       13038479  NM_001009611       PRAMEF4
1    chr1   12776881       13038479  NM_001010889       PRAMEF6
2    chr1   12776881       13038479  NM_001010890       PRAMEF9
3    chr1   12776881       13038479  NM_001012276       PRAMEF8
4    chr1   12776881       13038479  NM_001013631      HNRNPCL1
5    chr1   12776881       13038479  NM_001080830      PRAMEF12
6    chr1   12776881       13038479  NM_001099850      PRAMEF18
7    chr1   12776881       13038479  NM_001100631      PRAMEF22
8    chr1   12776881       13038479  NM_001103170       AADACL3
9    chr1   12776881       13038479  NM_001146181      HNRNPCL3
10   chr1   12776881       13038479  NM_001146344      PRAMEF11
11   chr1   12776881       13038479  NM_001294139       PRAMEF1
12   chr1   12776881       13038479  NM_001302551      HNRNPCL4
14   chr1   12776881       13038479     NM_023014       PRAMEF2
15   chr1   12776881       13038479     NM_152290      C1orf158
16  chr14   21698001       21818579     NM_020366       RPGRIP1
17  chr14   21698001       21818579     NM_031314        HNRNPC
18  chr14   75181455       75388610  NM_001080408         PROX2
19  chr14   75181455       75388610  NM_001244883          DLST
20  chr14   75181455       75388610  NM_001318508          FCF1
23  chr14   75181455       75388610     NM_019589         YLPM1
24  chr14   75181455       75388610     NM_031464       RPS6KL1
25   chr2   97525291       97656217  NM_001122646       FAM178B
28   chr2   97525291       97656217     NM_017789        SEMA4C
29   chr2   97525291       97656217     NR_110209  LOC101927053
30   chr2  234315998      234452788     NM_003648          DGKD
31   chr2  234315998      234452788     NM_018218         USP40
33   chr3  189611007      189714324  NM_001134418          P3H2
34   chr3  189611007      189714324  NM_001329148          TP63
38   chr7   14925101       16528019  NM_001004320          AGMO
39   chr7   14925101       16528019  NM_001101417          ISPD
40   chr7   14925101       16528019     NM_005924         MEOX2
41   chr7   14925101       16528019     NM_015464       SOSTDC1
42   chr7   14925101       16528019     NR_038947      ISPD-AS1
43   chr7   14925101       16528019     NR_110094     MEOX2-AS1
44   chr7   14925101       16528019     NR_134258  LOC105375166,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143640767      143813871  NM_001123068       PPIAL4G
1    chr1  143640767      143813871     NR_104014     LINC01138
2    chr1  143640767      143813871     NR_106967       MIR6077
3    chr1  143640767      143813871     NR_111930  LOC100132057
4    chr1  145308380      145449840  NM_001277444         NBPF9
5    chr1  145308380      145449840  NM_001278267        NBPF20
6    chr1  145308380      145449840  NM_001302371        NBPF10
7    chr1  145308380      145449840  NM_001313972         TXNIP
9    chr1  145308380      145449840     NM_145277          HFE2
10   chr1  145308380      145449840     NR_104217       NBPF25P
11   chr1  145308380      145449840     NR_125967  LOC101928979
12  chr20   14890447       14998117     NM_080676       MACROD2
13  chr20   14890447       14998117     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr16   14991670       15207666  NM_001270767          NTAN1
1   chr16   14991670       15207666  NM_001285445         PDXDC1
6   chr16   14991670       15207666  NM_001301064           RRN3
8   chr16   14991670       15207666     NM_006985         NPIPA1
9   chr16   14991670       15207666     NR_036140      MIR3179-1
10  chr16   14991670       15207666     NR_036141      MIR3180-1
11  chr16   14991670       15207666     NR_036142      MIR3180-2
12  chr16   14991670       15207666     NR_103772   LOC100288162
13  chr16   14991670       15207666     NR_106970      MIR6511A3
14  chr16   14991670       15207666     NR_107060      MIR6770-2
15  chr16   14991670       15207666     NR_123721  PKD1P6-NPIPP1
17  chr16   14991670       15207666     NR_125434   LOC100505915
18  chr16   14991670       15207666     NR_128713      MIR3670-4
19  chr16   18344138       18445841  NM_001282511         NPIPA8
20  chr16   18344138       18445841     NR_103772   LOC100288162
21  chr16   18344138       18445841     NR_106971      MIR6511A4
22  chr18   35114969       35230969     NM_020180          CELF4
23   chr2  110222332      110354301  NM_001099289         SH3RF3
24   chr2  110222332      110354301  NM_001321504         SEPT10
26  chr20   41047429       41212833     NM_133170          PTPRT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   14859328       15227718  NM_001033087       MACROD2
2   chr20   14859328       15227718     NR_037841   MACROD2-AS1
4   chr22   17163070       17727592  NM_001037814          GAB4
5   chr22   17163070       17727592  NM_001163079         CECR6
6   chr22   17163070       17727592  NM_001282227         CECR1
8   chr22   17163070       17727592  NM_001289905        IL17RA
9   chr22   17163070       17727592     NM_017829         CECR5
12  chr22   17163070       17727592     NM_175878          XKR3
14  chr22   17163070       17727592     NR_003607       HSFY1P1
15  chr22   17163070       17727592     NR_015352         CECR7
16  chr22   17163070       17727592     NR_024482     CECR5-AS1
17  chr22   17163070       17727592     NR_103793  LOC100996342
18  chr22   17163070       17727592     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143581610      144177289  NM_001123068       PPIAL4G
1    chr1  143581610      144177289  NM_001278267        NBPF20
2    chr1  143581610      144177289  NM_001287385        FAM72C
3    chr1  143581610      144177289  NM_001345942        FAM72D
7    chr1  143581610      144177289     NR_104014     LINC01138
8    chr1  143581610      144177289     NR_106967       MIR6077
9    chr1  143581610      144177289     NR_111930  LOC100132057
11  chr17   47938594       48095122     NM_001934          DLX4
12  chr17   47938594       48095122     NM_005220          DLX3
14   chr4    8593147        8709639  NM_001014447           CPZ
15   chr7   14926940       15596470  NM_001004320          AGMO
16   chr7  110542731      110658570  NM_001244606        IMMP2L
18   chr7  157368790      158890219  NM_001281932        NCAPG2
20   chr7  157368790      158890219  NM_001304522         VIPR2
22   chr7  157368790      158890219  NM_001308267        PTPRN2
24   chr7  157368790      158890219     NM_018051         WDR60
25   chr7  157368790      158890219     NM_020728         ESYT2
26   chr7  157368790      158890219     NR_024394     LINC00689
27   chr7  157368790      158890219     NR_030325        MIR595
28   chr7  157368790      158890219     NR_038966  LOC100506585
29   chr7  157368790      158890219     NR_049893       MIR5707
30   chr7  157368790      158890219     NR_132379     LINC01022,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67591681       68061250  NM_001127384        CTNNA3
2   chr14   21678098       21900238  NM_001170629          CHD8
3   chr14   21678098       21900238     NM_007192       SUPT16H
4   chr14   21678098       21900238     NM_020366       RPGRIP1
6   chr14   21678098       21900238     NM_031314        HNRNPC
7   chr14   21678098       21900238     NR_002916        SNORD8
8   chr14   21678098       21900238     NR_003029        SNORD9
9    chr2   97478029       97622162  NM_001122646       FAM178B
11   chr2   97478029       97622162     NM_016466       ANKRD39
13   chr2   97478029       97622162     NM_017623         CNNM3
14   chr2   97478029       97622162     NM_017789        SEMA4C
15   chr2   97478029       97622162     NM_144994       ANKRD23
16   chr2   97478029       97622162     NR_110209  LOC101927053
17   chr4  169237871      170831933  NM_001012967        DDX60L
18   chr4  169237871      170831933  NM_001166108         PALLD
21   chr4  169237871      170831933  NM_001243372         CLCN3
24   chr4  169237871      170831933     NM_012224          NEK1
25   chr4  169237871      170831933     NM_017631         DDX60
26   chr4  169237871      170831933     NM_017867          HPF1
27   chr4  169237871      170831933     NM_020870        SH3RF1
28   chr4  169237871      170831933     NM_032783          CBR4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81463999       81919421  NM_001012973         PLAC9
1   chr10   81463999       81919421  NM_001270367       TMEM254
4   chr10   81463999       81919421  NM_001278407        ANXA11
6   chr10   81463999       81919421  NM_001278495        NUTM2B
8   chr10   81463999       81919421     NM_003019         SFTPD
10  chr10   81463999       81919421     NR_002724         MBL1P
11  chr10   81463999       81919421     NR_027431   TMEM254-AS1
12  chr10   81463999       81919421     NR_029407     LOC642361
13  chr10   81463999       81919421     NR_033857       BMS1P21
14  chr10   81463999       81919421     NR_120611    NUTM2B-AS1
18  chr11   59412846       59611096  NM_001005324        OR10V1
19  chr11   59412846       59611096  NM_001178040          STX3
20  chr11   59412846       59611096     NM_005142           GIF
21  chr11   59412846       59611096     NM_017840        MRPL16
22  chr11   59412846       59611096     NM_152716         PATL1
23  chr11   59412846       59611096     NR_045005       OR10V2P
24  chr14   21766559       21893785  NM_001170629          CHD8
25  chr14   21766559       21893785     NM_007192       SUPT16H
26  chr14   21766559       21893785     NM_020366       RPGRIP1
28  chr14   21766559       21893785     NR_002916        SNORD8
29  chr14   21766559       21893785     NR_003029        SNORD9
30  chr15   20957130       21168188  NM_001277303        POTEB2
31  chr15   20957130       21168188     NM_207355        POTEB3
32  chr15   20957130       21168188     NR_027992        NBEAP1
33  chr15   20957130       21168188     NR_028506         NF1P2
34  chr15   20957130       21168188     NR_036062     MIR3118-2
35  chr15   20957130       21168188     NR_040094     LINC01193
36  chr15   20957130       21168188     NR_049895     MIR5701-2
38  chr16   21463750       21606783     NR_002594      SLC7A5P2
39  chr16   21463750       21606783     NR_027155        SMG1P3
40  chr16   21463750       21606783     NR_049833     MIR3680-2
41  chr16   21463750       21606783     NR_110930  LOC101927814
42   chr2   51666502       51806967     NR_135237     LOC730100
43   chr8      88908         349237  NM_001005504        OR4F21
44   chr8      88908         349237  NM_001042415        ZNF596
49   chr8      88908         349237     NR_003572     RPL23AP53
50   chr8      88908         349237     NR_103537        FAM87A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72673749       72815384     NM_013381         TRHDE
1   chr16   18406664       18609493  NM_001004060         NOMO2
2   chr16   18406664       18609493  NM_001282511        NPIPA8
3   chr16   18406664       18609493     NR_003569       ABCC6P1
4   chr16   18406664       18609493     NR_036140     MIR3179-1
5   chr16   18406664       18609493     NR_036142     MIR3180-2
6   chr16   18406664       18609493     NR_036144     MIR3180-3
7   chr16   18406664       18609493     NR_037442     MIR3670-1
8   chr16   18406664       18609493     NR_103772  LOC100288162
9   chr16   18406664       18609493     NR_106971     MIR6511A4
10  chr16   18406664       18609493     NR_107060     MIR6770-2
11  chr20   10885194       10989477     NR_109866  LOC101929413
12   chr3  192398106      192559760     NM_004113         FGF12
13   chr3  192398106      192559760     NM_178496        MB21D2
14   chr7   71429330       71540974  NM_001017440         CALN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21916640       22113615  NM_001005465        OR10G3
1   chr14   21916640       22113615  NM_001005466        OR10G2
2   chr14   21916640       22113615  NM_001163380         RAB2B
3   chr14   21916640       22113615  NM_001303523          TOX4
4   chr14   21916640       22113615     NM_019852        METTL3
6   chr14   21916640       22113615     NR_111966         SALL2
8    chr6   38036631       38245716  NM_001172418         BTBD9
9    chr6   38036631       38245716     NM_021943        ZFAND3
11   chr9  116743505      118406648     NM_000607          ORM1
12   chr9  116743505      118406648     NM_000608          ORM2
13   chr9  116743505      118406648  NM_001083885          WHRN
14   chr9  116743505      118406648  NM_001199233  LOC100505478
15   chr9  116743505      118406648  NM_001204344       TNFSF15
16   chr9  116743505      118406648     NM_001244        TNFSF8
18   chr9  116743505      118406648  NM_001317950          AKNA
20   chr9  116743505      118406648  NM_001318041        ZNF618
21   chr9  116743505      118406648  NM_001330760       TMEM268
22   chr9  116743505      118406648     NM_001633          AMBP
23   chr9  116743505      118406648     NM_002160           TNC
24   chr9  116743505      118406648     NM_004888      ATP6V1G1
27   chr9  116743505      118406648     NM_017418          DEC1
28   chr9  116743505      118406648     NM_032888       COL27A1
29   chr9  116743505      118406648     NM_138424         KIF12
31   chr9  116743505      118406648     NR_030255        MIR455
32   chr9  116743505      118406648     NR_110950  LOC101928748,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28794957       30389019  NM_001130414         APBA2
1   chr15   28794957       30389019  NM_001282468       GOLGA8M
2   chr15   28794957       30389019  NM_001282472       GOLGA8J
3   chr15   28794957       30389019  NM_001301025          TJP1
6   chr15   28794957       30389019     NM_015307      FAM189A1
7   chr15   28794957       30389019     NM_138704        NSMCE3
8   chr15   28794957       30389019     NR_026589       WHAMMP2
9   chr15   28794957       30389019     NR_036443       HERC2P9
10  chr15   28794957       30389019     NR_036475  LOC100289656
11  chr15   28794957       30389019     NR_037599     PDCD6IPP2
12  chr15   28794957       30389019     NR_047567     GOLGA6L7P
13  chr15   28794957       30389019     NR_135221  LOC100130111
14   chr2   97322345       97429700  NM_001293083        FER1L5
15   chr2   97322345       97429700  NM_001322354        LMAN2L
16   chr2   97322345       97429700     NM_020184         CNNM4
18  chr20   14649958       15241113  NM_001033087       MACROD2
20  chr20   14649958       15241113     NR_037841   MACROD2-AS1
22   chr3  160015671      160203669  NM_001190241         IFT80
24   chr3  160015671      160203669  NM_001288753          SMC4
26   chr3  160015671      160203669     NM_173084        TRIM59
27   chr3  160015671      160203669     NR_029525       MIR16-2
28   chr3  160015671      160203669     NR_029663        MIR15B
29   chr4  169255230      169497280  NM_001012967        DDX60L
30   chr4  169255230      169497280  NM_001166108         PALLD
32   chr8    8411885        8564402     NM_194284        CLDN23,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   72678993       72788317     NM_013381         TRHDE
1   chr14   42057525       42163981  NM_001346175         LRFN5
2    chr2   52020060       52153558     NR_135237     LOC730100
3   chr22   17236241       17902682  NM_001037814          GAB4
4   chr22   17236241       17902682  NM_001163079         CECR6
5   chr22   17236241       17902682  NM_001282227         CECR1
7   chr22   17236241       17902682  NM_001289905        IL17RA
8   chr22   17236241       17902682  NM_001290046         CECR2
9   chr22   17236241       17902682     NM_017829         CECR5
12  chr22   17236241       17902682     NM_175878          XKR3
14  chr22   17236241       17902682     NR_003607       HSFY1P1
15  chr22   17236241       17902682     NR_015352         CECR7
16  chr22   17236241       17902682     NR_024482     CECR5-AS1
17  chr22   17236241       17902682     NR_038398         CECR3
18  chr22   17236241       17902682     NR_103793  LOC100996342
19   chr3   80461661       81059068     NR_132411     LOC728290
20   chr5  104396643      104734760     NR_000039       RAB9BP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  130230069      130350109     NM_133448      TMEM132D
1   chr16   16270673       16554295  NM_001004067         NOMO3
2   chr16   16270673       16554295  NM_001079528         ABCC6
4   chr16   16270673       16554295  NM_001282511        NPIPA8
5   chr16   16270673       16554295     NR_036140     MIR3179-1
6   chr16   16270673       16554295     NR_036141     MIR3180-1
7   chr16   16270673       16554295     NR_036142     MIR3180-2
8   chr16   16270673       16554295     NR_036447        PKD1P1
9   chr16   16270673       16554295     NR_103772  LOC100288162
10  chr16   16270673       16554295     NR_106766     MIR6511A1
11  chr16   16270673       16554295     NR_106971     MIR6511A4
12  chr16   16270673       16554295     NR_107060     MIR6770-2
13  chr16   16270673       16554295     NR_128713     MIR3670-4
14  chr19   57495730       58060252  NM_001012729          DUXA
15  chr19   57495730       58060252  NM_001015878         AURKC
17  chr19   57495730       58060252  NM_001023561        ZNF749
18  chr19   57495730       58060252  NM_001023563        ZNF805
19  chr19   57495730       58060252  NM_001098491        ZNF419
20  chr19   57495730       58060252  NM_001144068        ZNF772
21  chr19   57495730       58060252  NM_001172773        ZNF548
22  chr19   57495730       58060252  NM_001199295        ZNF549
23  chr19   57495730       58060252  NM_001277090        ZNF550
24  chr19   57495730       58060252  NM_001304334        ZNF773
26  chr19   57495730       58060252  NM_001330617         ZNF17
27  chr19   57495730       58060252  NM_001330622        ZNF460
28  chr19   57495730       58060252     NM_003417        ZNF264
31  chr19   57495730       58060252     NM_020633         VN1R1
32  chr19   57495730       58060252     NM_020657        ZNF304
33  chr19   57495730       58060252     NM_020903         USP29
34  chr19   57495730       58060252     NM_052882          ZIM3
35  chr19   57495730       58060252     NM_173631        ZNF547
36  chr19   57495730       58060252     NM_213598        ZNF543
37  chr19   57495730       58060252     NR_002166      TRAPPC2B
39  chr19   57495730       58060252     NR_136529  LOC105372476
40   chr2   52283714       52685077     NR_135237     LOC730100
41   chr2   52283714       52685077     NR_135239  LOC105374596
42   chr3  105348412      105982566  NM_001321786          CBLB
48   chr3  197220589      198131465     NM_000996        RPL35A
49   chr3  197220589      198131465  NM_001011537        FYTTD1
50   chr3  197220589      198131465  NM_001145248       FAM157A
51   chr3  197220589      198131465  NM_001145642         RUBCN
53   chr3  197220589      198131465  NM_001323027          IQCG
58   chr3  197220589      198131465     NM_032773         LRCH3
59   chr3  197220589      198131465     NM_033029          LMLN
60   chr3  197220589      198131465     NM_203314          BDH1
62   chr3  197220589      198131465     NR_003266     LOC220729
63   chr3  197220589      198131465     NR_003291     ANKRD18DP
65   chr3  197220589      198131465     NR_030627        MIR922
66   chr3  197220589      198131465     NR_046669      LMLN-AS1
67   chr6  162611924      162768313     NM_013988         PARK2
68   chr7   17681057       17958780     NM_015132         SNX13,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63124613       63264653     NR_047029     LINC00448
1   chr14   39060883       39648721  NM_001079537      TRAPPC6B
2   chr14   39060883       39648721     NM_002687           PNN
3   chr14   39060883       39648721     NM_003616        GEMIN2
4   chr14   39060883       39648721     NM_006364        SEC23A
5   chr14   39060883       39648721     NR_039982     LINC00639
6   chr14   39060883       39648721     NR_135256  LOC105370457
7   chr14   81634538       81751229  NM_001256430         STON2
8   chr14   81634538       81751229  NM_001278940        GTF2A1
11  chr14   81634538       81751229     NR_003021       SNORA79
12  chr14   81634538       81751229     NR_135252  LOC101928504
13  chr15   28697854       28900369     NR_033351       GOLGA8F
14  chr15   28697854       28900369     NR_033353       GOLGA8G
15  chr15   28697854       28900369     NR_036443       HERC2P9
16  chr15   28697854       28900369     NR_039734     MIR4509-3
17   chr2  110163457      110332837  NM_001099289        SH3RF3
18   chr2  110163457      110332837  NM_001321504        SEPT10
20  chr22   19004236       19254563  NM_001184781         DGCR2
21  chr22   19004236       19254563  NM_001256534       SLC25A1
22  chr22   19004236       19254563     NM_001835        CLTCL1
23  chr22   19004236       19254563     NM_005315          GSC2
25  chr22   19004236       19254563     NM_022719        DGCR14
26  chr22   19004236       19254563     NM_053006         TSSK2
27  chr22   19004236       19254563     NR_024157        DGCR11
28  chr22   19004236       19254563     NR_024159         DGCR9
29  chr22   19004236       19254563     NR_026651        DGCR10
30  chr22   19004236       19254563     NR_103767     LINC01311
31  chr22   19004236       19254563     NR_110533         DGCR5
32   chr5   17751127       17857560     NR_134286     LOC646241
34   chr7   64028394       64141584  NM_001282360        ZNF107
35   chr7   64028394       64141584     NR_033245     LOC641746
36   chr7   64028394       64141584     NR_077227  LOC100128885
38   chr7   64028394       64141584     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21668662       21917657  NM_001170629          CHD8
1   chr14   21668662       21917657     NM_007192       SUPT16H
2   chr14   21668662       21917657     NM_020366       RPGRIP1
4   chr14   21668662       21917657     NM_031314        HNRNPC
5   chr14   21668662       21917657     NR_002916        SNORD8
6   chr14   21668662       21917657     NR_003029        SNORD9
7   chr14   21668662       21917657     NR_038970     LINC00641
9   chr15   28485613       28734008     NM_004667         HERC2
10  chr15   28485613       28734008     NR_033351       GOLGA8F
11  chr15   28485613       28734008     NR_033353       GOLGA8G
12  chr15   28485613       28734008     NR_039734     MIR4509-3
13  chr16    6757472        6878284  NM_001142334        RBFOX1
16  chr16   21479041       21596045     NR_002594      SLC7A5P2
17  chr16   21479041       21596045     NR_027155        SMG1P3
18  chr16   21479041       21596045     NR_049833     MIR3680-2
19   chr6  136798880      136971620  NM_001198608          MAP7
23   chr6  136798880      136971620     NM_005923        MAP3K5
24   chr6  136798880      136971620     NR_125858  LOC101928461,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   82448091       82574462  NM_001297704        ADGRL2
2    chr1  145286467      153017628     NM_000396          CTSK
3    chr1  145286467      153017628     NM_000449          RFX5
4    chr1  145286467      153017628     NM_000566        FCGR1A
5    chr1  145286467      153017628  NM_001001523          RORC
6    chr1  145286467      153017628  NM_001004432        LINGO4
7    chr1  145286467      153017628  NM_001005464      HIST2H3A
9    chr1  145286467      153017628  NM_001008536        TCHHL1
10   chr1  145286467      153017628  NM_001009931          HRNR
11   chr1  145286467      153017628  NM_001012758        NUDT17
12   chr1  145286467      153017628  NM_001014342          FLG2
13   chr1  145286467      153017628  NM_001024599     HIST2H2BF
14   chr1  145286467      153017628  NM_001024679       C1orf68
15   chr1  145286467      153017628  NM_001025231          KPRP
16   chr1  145286467      153017628  NM_001038707      CDC42SE1
17   chr1  145286467      153017628  NM_001039888      ANKRD34A
18   chr1  145286467      153017628  NM_001040217        FAM63A
19   chr1  145286467      153017628  NM_001040874    HIST2H2AA4
20   chr1  145286467      153017628  NM_001083965         TDRKH
21   chr1  145286467      153017628  NM_001097612        GPR89A
22   chr1  145286467      153017628  NM_001101663        NBPF11
24   chr1  145286467      153017628  NM_001122965          RPTN
25   chr1  145286467      153017628  NM_001123375      HIST2H3D
26   chr1  145286467      153017628  NM_001128600         LCE6A
27   chr1  145286467      153017628  NM_001134939          OAZ3
28   chr1  145286467      153017628  NM_001135636       PIP5K1A
29   chr1  145286467      153017628  NM_001135789       PPIAL4C
31   chr1  145286467      153017628  NM_001136003        C2CD4D
32   chr1  145286467      153017628  NM_001136478        ANP32E
34   chr1  145286467      153017628  NM_001136543        LYSMD1
..    ...        ...            ...           ...           ...
202  chr1  145286467      153017628     NR_051960         FALEC
204  chr1  145286467      153017628     NR_073514         TARS2
205  chr1  145286467      153017628     NR_102405         NBPF8
206  chr1  145286467      153017628     NR_103466       NBPF13P
207  chr1  145286467      153017628     NR_103561       NBPF18P
208  chr1  145286467      153017628     NR_103778       FLG-AS1
212  chr1  145286467      153017628     NR_104086      RNVU1-19
214  chr1  145286467      153017628     NR_104133  ADAMTSL4-AS1
215  chr1  145286467      153017628     NR_104217       NBPF25P
218  chr1  145286467      153017628     NR_106794       MIR6736
219  chr1  145286467      153017628     NR_106938       MIR6878
220  chr1  145286467      153017628     NR_106967       MIR6077
224  chr1  145286467      153017628     NR_111001        DRD5P2
225  chr1  145286467      153017628     NR_111930  LOC100132057
226  chr1  145286467      153017628     NR_111933     LOC388692
227  chr1  145286467      153017628     NR_111934       FAM231D
228  chr1  145286467      153017628     NR_111936       PDZK1P1
230  chr1  145286467      153017628     NR_111950     LINC00869
231  chr1  145286467      153017628     NR_111954  LOC103091866
232  chr1  145286467      153017628     NR_120331  LOC101927468
233  chr1  145286467      153017628     NR_121645       RNVU1-8
234  chr1  145286467      153017628     NR_125392      RNVU1-20
235  chr1  145286467      153017628     NR_125967  LOC101928979
236  chr1  145286467      153017628     NR_131972         GBAT2
237  chr1  145286467      153017628     NR_135098  LOC105371433
238  chr1  145286467      153017628     NR_135559  LOC100505824
240  chr1  145286467      153017628     NR_135595  LOC100507670
241  chr1  145286467      153017628     NR_135813  LOC101929798
242  chr1  145286467      153017628     NR_136328  LOC101927429
244  chr7    8653643        9014458     NM_152745         NXPH1

[186 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48350928       48953832  NM_001005512        OR4A47
1   chr11   48350928       48953832  NM_001005513        OR4C45
2   chr12  130244042      130370629     NM_133448      TMEM132D
3   chr15   28659289       28784921     NR_033351       GOLGA8F
4   chr15   28659289       28784921     NR_033353       GOLGA8G
5   chr15   28659289       28784921     NR_039734     MIR4509-3
7    chr7   64100499       64384121  NM_001160183        ZNF138
8    chr7   64100499       64384121  NM_001282360        ZNF107
9    chr7   64100499       64384121     NM_021148        ZNF273
12   chr7   64100499       64384121     NR_106898       MIR6839
13   chr7   75736942       75852537  NM_001110199         SRRM3
14   chr7   75736942       75852537     NR_135079       GTF2IP7
15   chr9   41500138       43268307  NM_001012419     ANKRD20A3
17   chr9   41500138       43268307  NM_001012421     ANKRD20A2
19   chr9   41500138       43268307  NM_001113541     SPATA31A5
20   chr9   41500138       43268307     NM_015667     SPATA31A7
21   chr9   41500138       43268307     NM_199244       FOXD4L4
22   chr9   41500138       43268307     NR_003528       ZNF658B
23   chr9   41500138       43268307     NR_003670        FGF7P3
24   chr9   41500138       43268307     NR_015363         GLIDR
25   chr9   41500138       43268307     NR_026558        AQP7P3
26   chr9   41500138       43268307     NR_026803       FAM74A1
27   chr9   41500138       43268307     NR_027472     LOC642929
28   chr9   41500138       43268307     NR_046175     LOC286297
29   chr9   41500138       43268307     NR_121570  LOC101928381
30   chr9   41500138       43268307     NR_121572      GXYLT1P3
34   chr9   41500138       43268307     NR_126048  LOC102724238
35   chr9   41500138       43268307     NR_126049     LOC554249
36   chr9   41500138       43268307     NR_135597  LOC101928195
37   chr9   41500138       43268307     NR_136299  LOC101929583
38   chr9   41500138       43268307     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   80896143       81025404  NM_001318536         SPRY2
3   chr14   42068316       42186332  NM_001346175         LRFN5
4    chr2  133692383      137219473  NM_001008540         CXCR4
5    chr2  133692383      137219473  NM_001018044       MAP3K19
6    chr2  133692383      137219473  NM_001172435      RAB3GAP1
7    chr2  133692383      137219473  NM_001282798        R3HDM1
9    chr2  133692383      137219473  NM_001286568        ZRANB3
10   chr2  133692383      137219473  NM_001293312          DARS
11   chr2  133692383      137219473  NM_001307983         ACMSD
13   chr2  133692383      137219473     NM_002299           LCT
14   chr2  133692383      137219473     NM_002410         MGAT5
16   chr2  133692383      137219473     NM_005915          MCM6
17   chr2  133692383      137219473     NM_014607         UBXN4
18   chr2  133692383      137219473     NM_030923       TMEM163
20   chr2  133692383      137219473     NM_207363        NCKAP5
21   chr2  133692383      137219473     NR_029672      MIR128-1
22   chr2  133692383      137219473     NR_036549     CCNT2-AS1
23   chr2  133692383      137219473     NR_037450       MIR3679
24   chr2  133692383      137219473     NR_037649         CCNT2
25   chr2  133692383      137219473     NR_045486  LOC100507600
26   chr2  133692383      137219473     NR_049856       MIR5590
27   chr2  133692383      137219473     NR_110199      DARS-AS1
29   chr2  133692383      137219473     NR_110294  LOC101928161
30  chr22   32406752       32752421     NM_000343        SLC5A1
31  chr22   32406752       32752421  NM_001010859      C22orf42
32  chr22   32406752       32752421  NM_001098527         RFPL2
36  chr22   32406752       32752421     NM_006604         RFPL3
38  chr22   32406752       32752421     NM_014227        SLC5A4
39  chr22   32406752       32752421     NR_040114       AP1B1P1
40   chr6   65591313       65754034  NM_001142800           EYS
41   chr7   12149686       12261116  NM_001134232      TMEM106B,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr15   28203944       28310117     NM_000275           OCA2
2   chr16   15137439       16675800  NM_001004067          NOMO3
3   chr16   15137439       16675800  NM_001040113          MYH11
4   chr16   15137439       16675800  NM_001079528          ABCC6
5   chr16   15137439       16675800  NM_001128423         MPV17L
6   chr16   15137439       16675800  NM_001142469       C16orf45
7   chr16   15137439       16675800  NM_001143979           NDE1
9   chr16   15137439       16675800  NM_001184998       KIAA0430
10  chr16   15137439       16675800  NM_001270767          NTAN1
11  chr16   15137439       16675800  NM_001277325         NPIPA5
12  chr16   15137439       16675800  NM_001282511         NPIPA8
13  chr16   15137439       16675800  NM_001285449         PDXDC1
14  chr16   15137439       16675800  NM_001301064           RRN3
16  chr16   15137439       16675800     NM_004996          ABCC1
19  chr16   15137439       16675800     NR_030159         MIR484
20  chr16   15137439       16675800     NR_036140      MIR3179-1
21  chr16   15137439       16675800     NR_036141      MIR3180-1
22  chr16   15137439       16675800     NR_036142      MIR3180-2
23  chr16   15137439       16675800     NR_036447         PKD1P1
24  chr16   15137439       16675800     NR_037466      MIR3180-4
25  chr16   15137439       16675800     NR_103772   LOC100288162
26  chr16   15137439       16675800     NR_106761        MIR6506
27  chr16   15137439       16675800     NR_106766      MIR6511A1
28  chr16   15137439       16675800     NR_106775      MIR6511B1
29  chr16   15137439       16675800     NR_106965      MIR6511B2
30  chr16   15137439       16675800     NR_106971      MIR6511A4
31  chr16   15137439       16675800     NR_107060      MIR6770-2
32  chr16   15137439       16675800     NR_123721  PKD1P6-NPIPP1
34  chr16   15137439       16675800     NR_125434   LOC100505915
35  chr16   15137439       16675800     NR_128713      MIR3670-4
36  chr16   15137439       16675800     NR_130755          FOPNL
37   chr5   17730058       18303720     NR_134286      LOC646241,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr1  143721048      143905398  NM_001123068    PPIAL4G
1  chr1  143721048      143905398  NM_001287385     FAM72C
2  chr1  143721048      143905398  NM_001345942     FAM72D
6  chr1  143721048      143905398     NR_104014  LINC01138,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143671481      143773671  NM_001123068       PPIAL4G
1    chr1  143671481      143773671     NR_104014     LINC01138
2    chr1  143671481      143773671     NR_106967       MIR6077
3    chr1  143671481      143773671     NR_111930  LOC100132057
4   chr15   28767174       29188326  NM_001282468       GOLGA8M
5   chr15   28767174       29188326     NR_026589       WHAMMP2
6   chr15   28767174       29188326     NR_033351       GOLGA8F
7   chr15   28767174       29188326     NR_033353       GOLGA8G
8   chr15   28767174       29188326     NR_036443       HERC2P9
9   chr15   28767174       29188326     NR_036475  LOC100289656
10  chr15   28767174       29188326     NR_037599     PDCD6IPP2
11  chr15   28767174       29188326     NR_047567     GOLGA6L7P
12   chr7  110730103      110862104  NM_001099658         LRRN3
13   chr7  110730103      110862104  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   22135412       22441683  NM_001004719         OR4M2
1   chr15   22135412       22441683  NM_001005241         OR4N4
2   chr15   22135412       22441683     NR_015416     LOC727924
3   chr15   22135412       22441683     NR_028067        OR4N3P
4   chr15   22135412       22441683     NR_028506         NF1P2
5   chr15   22135412       22441683     NR_110480  LOC101927079
7   chr15   22135412       22441683     NR_128721     MIR5701-3
8   chr15   28683471       29271309  NM_001130414         APBA2
9   chr15   28683471       29271309  NM_001282468       GOLGA8M
10  chr15   28683471       29271309     NR_026589       WHAMMP2
11  chr15   28683471       29271309     NR_033351       GOLGA8F
12  chr15   28683471       29271309     NR_033353       GOLGA8G
13  chr15   28683471       29271309     NR_036443       HERC2P9
14  chr15   28683471       29271309     NR_036475  LOC100289656
15  chr15   28683471       29271309     NR_037599     PDCD6IPP2
16  chr15   28683471       29271309     NR_039734     MIR4509-3
17  chr15   28683471       29271309     NR_047567     GOLGA6L7P
18  chr15   98271184       99699683  NM_001102612       PGPEP1L
20  chr15   98271184       99699683  NM_001288615         TTC23
22  chr15   98271184       99699683  NM_001291858         IGF1R
23  chr15   98271184       99699683     NM_015286          SYNM
24  chr15   98271184       99699683     NM_182562       FAM169B
25  chr15   98271184       99699683     NM_183376        ARRDC4
26  chr15   98271184       99699683     NR_024172     LINC00923
27  chr15   98271184       99699683     NR_039864       MIR4714
28  chr15   98271184       99699683     NR_120325     LINC01582
29  chr15   98271184       99699683     NR_126453         IRAIN
30  chr15   98271184       99699683     NR_126487        LUNAR1
31   chr2  110168484      110497027  NM_001099289        SH3RF3
32   chr2  110168484      110497027  NM_001321504        SEPT10
34   chr2  110168484      110497027     NM_023016        SOWAHC
35   chr5   85246944       85660060     NR_003719       NBPF22P
36   chr7   10954654       11199041     NM_002489        NDUFA4
37   chr7   10954654       11199041     NM_014660         PHF14,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   31408660       31584306  NM_001304274        IMMP1L
1   chr11   31408660       31584306     NM_019040          ELP4
2   chr11   31408660       31584306     NM_181706       DNAJC24
3   chr11   99200521      100538310  NM_001243270         CNTN5
6   chr13   63177868       63301210     NR_047029     LINC00448
7   chr16   18319393       18805802  NM_001004060         NOMO2
8   chr16   18319393       18805802     NM_001019        RPS15A
9   chr16   18319393       18805802  NM_001282511        NPIPA8
10  chr16   18319393       18805802  NM_001313858       ARL6IP1
12  chr16   18319393       18805802     NR_003569       ABCC6P1
13  chr16   18319393       18805802     NR_036140     MIR3179-1
14  chr16   18319393       18805802     NR_036142     MIR3180-2
15  chr16   18319393       18805802     NR_036144     MIR3180-3
16  chr16   18319393       18805802     NR_037442     MIR3670-1
17  chr16   18319393       18805802     NR_103772  LOC100288162
18  chr16   18319393       18805802     NR_106971     MIR6511A4
19  chr16   18319393       18805802     NR_107060     MIR6770-2
20  chr17   29364387       29727713     NM_000267           NF1
21  chr17   29364387       29727713  NM_001003927         EVI2A
23  chr17   29364387       29727713     NM_002544           OMG
24  chr17   29364387       29727713     NM_006495         EVI2B
25  chr17   29364387       29727713     NM_032932     RAB11FIP4
26  chr17   29364387       29727713     NR_039886       MIR4733,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr18   61831455       61959772     NR_033881  LOC284294
1  chr18   61831455       61959772     NR_033983  LINC01538
2  chr22   19027682       19127841  NM_001184781      DGCR2
3  chr22   19027682       19127841     NM_022719     DGCR14
4  chr22   19027682       19127841     NM_053006      TSSK2
5  chr22   19027682       19127841     NR_024157     DGCR11,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12820844       12931713  NM_001013631      HNRNPCL1
1    chr1   12820844       12931713  NM_001080830      PRAMEF12
2    chr1   12820844       12931713  NM_001146181      HNRNPCL3
3    chr1   12820844       12931713  NM_001146344      PRAMEF11
4    chr1   12820844       12931713  NM_001294139       PRAMEF1
5    chr1   12820844       12931713  NM_001302551      HNRNPCL4
7    chr1   12820844       12931713     NM_023014       PRAMEF2
8    chr1   12820844       12931713     NM_152290      C1orf158
9   chr15   28711426       29871919  NM_001130414         APBA2
10  chr15   28711426       29871919  NM_001282468       GOLGA8M
11  chr15   28711426       29871919     NM_015307      FAM189A1
12  chr15   28711426       29871919     NM_138704        NSMCE3
13  chr15   28711426       29871919     NR_026589       WHAMMP2
14  chr15   28711426       29871919     NR_033351       GOLGA8F
15  chr15   28711426       29871919     NR_033353       GOLGA8G
16  chr15   28711426       29871919     NR_036443       HERC2P9
17  chr15   28711426       29871919     NR_036475  LOC100289656
18  chr15   28711426       29871919     NR_037599     PDCD6IPP2
19  chr15   28711426       29871919     NR_039734     MIR4509-3
20  chr15   28711426       29871919     NR_047567     GOLGA6L7P
21   chr2  235283098      235525887  NM_001282431         ARL4C
23   chr7   14876597       14982439     NM_004080          DGKB
25   chr7   80026722       80489582     NM_000072          CD36
28   chr7   80026722       80489582  NM_001102386         GNAT3
34   chr7   80026722       80489582     NM_006379        SEMA3C,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144022955      144512661  NM_001135789       PPIAL4C
1    chr1  144022955      144512661  NM_001278267        NBPF20
2    chr1  144022955      144512661     NR_024511     LINC00623
4    chr1  144022955      144512661     NR_111953     LINC00869
5   chr16   21738464       23056976  NM_001135865        NPIPB5
6   chr16   21738464       23056976  NM_001161683          OTOA
7   chr16   21738464       23056976  NM_001164579      C16orf52
8   chr16   21738464       23056976  NM_001258033        POLR3E
9   chr16   21738464       23056976  NM_001310148        NPIPB4
10  chr16   21738464       23056976     NM_001802          CDR2
11  chr16   21738464       23056976     NM_003366        UQCRC2
12  chr16   21738464       23056976     NM_006043        HS3ST2
13  chr16   21738464       23056976     NM_013302         EEF2K
16  chr16   21738464       23056976     NM_173615         VWA3A
17  chr16   21738464       23056976     NM_173806         PDZD9
18  chr16   21738464       23056976     NR_003370        RRN3P1
19  chr16   21738464       23056976     NR_003676     LOC653786
20  chr16   21738464       23056976     NR_027154        SMG1P1
21  chr16   21738464       23056976     NR_027460        RRN3P3
22  chr16   21738464       23056976     NR_136333       MFSD13B
23  chr16   68588069       68874472  NM_001305204         ZFP90
25  chr16   68588069       68874472  NM_001317184          CDH1
26  chr16   68588069       68874472  NM_001317195          CDH3
27  chr16   68588069       68874472     NR_106988     MIR7641-2
28  chr22   17253890       17371963     NM_175878          XKR3
29  chr22   17253890       17371963     NR_003607       HSFY1P1
30   chr9    9841744       10239963     NM_002839         PTPRD
31   chr9   41885808       42051212     NR_003670        FGF7P3
32   chr9   41885808       42051212     NR_015363         GLIDR
35   chr9   41885808       42051212     NR_126048  LOC102724238
36   chr9   41885808       42051212     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    2036519        2237617     NR_040253     LINC00700
1   chr10    2036519        2237617     NR_106720       MIR6072
2   chr10   68359164       68760527  NM_001127384        CTNNA3
4   chr10   68359164       68760527     NM_178011        LRRTM3
5   chr10   68359164       68760527     NR_111911  LOC101928961
6   chr12   71536041       71779682     NM_004616        TSPAN8
7   chr16   18107182       18489850  NM_001282511        NPIPA8
8   chr16   18107182       18489850     NR_103772  LOC100288162
9   chr16   18107182       18489850     NR_106971     MIR6511A4
10  chr16   18107182       18489850     NR_107060     MIR6770-2
11   chr7  110601151      110704844  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   63324186       63458160     NR_047029  LINC00448
3   chr14   21769454       21980512  NM_001163380      RAB2B
4   chr14   21769454       21980512  NM_001170629       CHD8
5   chr14   21769454       21980512  NM_001303523       TOX4
6   chr14   21769454       21980512     NM_007192    SUPT16H
7   chr14   21769454       21980512     NM_019852     METTL3
8   chr14   21769454       21980512     NM_020366    RPGRIP1
11  chr14   21769454       21980512     NR_002916     SNORD8
12  chr14   21769454       21980512     NR_003029     SNORD9
13  chr18   40202433       40468862     NM_002930       RIT2
14  chr18   40202433       40468862     NR_046174  LINC00907
15   chr2  242475028      242673682  NM_001164356      THAP4
16   chr2  242475028      242673682  NM_001165031      DTYMK
17   chr2  242475028      242673682  NM_001330161       ING5
21   chr2  242475028      242673682     NM_032515        BOK
22   chr2  242475028      242673682     NM_178326      ATG4B
23   chr2  242475028      242673682     NR_033346    BOK-AS1
24   chr5   99726114       99872221     NM_198507    FAM174A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   20693553       21496785  NM_001145004      GOLGA6L6
1   chr15   20693553       21496785  NM_001277303        POTEB2
2   chr15   20693553       21496785     NM_207355        POTEB3
3   chr15   20693553       21496785     NR_027411      GOLGA8CP
4   chr15   20693553       21496785     NR_027992        NBEAP1
5   chr15   20693553       21496785     NR_028506         NF1P2
6   chr15   20693553       21496785     NR_036062     MIR3118-2
7   chr15   20693553       21496785     NR_036432       HERC2P3
8   chr15   20693553       21496785     NR_040094     LINC01193
9   chr15   20693553       21496785     NR_049895     MIR5701-2
11  chr15   28668521       28814116     NR_033351       GOLGA8F
12  chr15   28668521       28814116     NR_033353       GOLGA8G
13  chr15   28668521       28814116     NR_039734     MIR4509-3
15  chr22   17260261       17623587  NM_001037814          GAB4
16  chr22   17260261       17623587  NM_001163079         CECR6
17  chr22   17260261       17623587  NM_001289905        IL17RA
18  chr22   17260261       17623587     NM_017829         CECR5
21  chr22   17260261       17623587     NM_175878          XKR3
22  chr22   17260261       17623587     NR_003607       HSFY1P1
23  chr22   17260261       17623587     NR_015352         CECR7
24  chr22   17260261       17623587     NR_103793  LOC100996342,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   96436102       96540482     NM_000769    CYP2C19
1   chr10   96436102       96540482     NM_000772    CYP2C18
2   chr11   48269854       48510923  NM_001004702      OR4C3
3   chr11   48269854       48510923  NM_001004725      OR4S1
4   chr11   48269854       48510923  NM_001004726      OR4X1
5   chr11   48269854       48510923  NM_001005512     OR4A47
6   chr11   48269854       48510923  NM_001005513     OR4C45
7   chr16   21833284       22167820  NM_001164579   C16orf52
8   chr16   21833284       22167820  NM_001310148     NPIPB4
9   chr16   21833284       22167820     NM_003366     UQCRC2
10  chr16   21833284       22167820     NM_173615      VWA3A
11  chr16   21833284       22167820     NM_173806      PDZD9
12  chr22   19856930       19983128     NM_000754       COMT
15  chr22   19856930       19983128  NM_001282512     TXNRD2
16  chr22   19856930       19983128     NM_001670      ARVCF
19  chr22   19856930       19983128     NR_039918    MIR4761
20   chr6  131084564      133769020     NM_000045       ARG1
21   chr6  131084564      133769020     NM_001016      RPS12
22   chr6  131084564      133769020  NM_001033080      TAAR2
23   chr6  131084564      133769020  NM_001135554    EPB41L2
24   chr6  131084564      133769020  NM_001145659     CTAGE9
25   chr6  131084564      133769020  NM_001195597      SMLR1
27   chr6  131084564      133769020  NM_001291702       VNN3
28   chr6  131084564      133769020  NM_001301012       EYA4
29   chr6  131084564      133769020  NM_001326578       STX7
32   chr6  131084564      133769020     NM_001901       CTGF
34   chr6  131084564      133769020     NM_003967      TAAR5
35   chr6  131084564      133769020     NM_004666       VNN1
36   chr6  131084564      133769020     NM_004830      MED23
37   chr6  131084564      133769020     NM_006208      ENPP1
39   chr6  131084564      133769020     NM_015529      MOXD1
41   chr6  131084564      133769020     NM_016377      AKAP7
42   chr6  131084564      133769020     NM_030908      OR2A4
43   chr6  131084564      133769020     NM_052831    SLC18B1
44   chr6  131084564      133769020     NM_053278      TAAR8
45   chr6  131084564      133769020     NM_078488       VNN2
46   chr6  131084564      133769020     NM_138327      TAAR1
49   chr6  131084564      133769020     NM_175057      TAAR9
50   chr6  131084564      133769020     NM_175067      TAAR6
51   chr6  131084564      133769020     NR_002434   SNORD101
52   chr6  131084564      133769020     NR_002435   SNORD100
53   chr6  131084564      133769020     NR_002436    SNORA33
54   chr6  131084564      133769020     NR_026969  LINC00326
55   chr6  131084564      133769020     NR_028511      TAAR3
56   chr6  131084564      133769020     NR_038981  LINC01013
57   chr6  131084564      133769020     NR_039610   MIR548H5
58   chr6  131084564      133769020     NR_039673  MIR548AJ1
60   chr6  131084564      133769020     NR_133007      ENPP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145296703      145431953  NM_001277444         NBPF9
1    chr1  145296703      145431953  NM_001278267        NBPF20
2    chr1  145296703      145431953  NM_001302371        NBPF10
3    chr1  145296703      145431953     NM_145277          HFE2
4    chr1  145296703      145431953     NR_104217       NBPF25P
5    chr1  145296703      145431953     NR_125967  LOC101928979
6   chr14   21854571       21958120  NM_001163380         RAB2B
7   chr14   21854571       21958120  NM_001170629          CHD8
8   chr14   21854571       21958120  NM_001303523          TOX4
11  chr14   21854571       21958120     NR_002916        SNORD8
12  chr14   21854571       21958120     NR_003029        SNORD9
13   chr2   51166085       51353028  NM_001330079         NRXN1
16   chr2   51166085       51353028     NR_135237     LOC730100
17   chr4   69282300       69437344     NM_001077       UGT2B17
18   chr4   69282300       69437344     NM_014058     TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   16295244       16399873  NM_001170798    SLC15A5
1   chr14   21748221       21944488  NM_001163380      RAB2B
2   chr14   21748221       21944488  NM_001170629       CHD8
3   chr14   21748221       21944488     NM_007192    SUPT16H
4   chr14   21748221       21944488     NM_020366    RPGRIP1
7   chr14   21748221       21944488     NR_002916     SNORD8
8   chr14   21748221       21944488     NR_003029     SNORD9
9   chr19   21609807       21871560  NM_001001415     ZNF429
10  chr19   21609807       21871560     NM_175910     ZNF493
11  chr19   21609807       21871560     NR_037194  LINC00664
12   chr3   60338122       60843320  NM_001320899       FHIT
13   chr3   60338122       60843320     NR_128708   MIR548BB
14   chr6  162792837      162912548     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  104250038      105807724  NM_001008218         AMY1B
1    chr1  104250038      105807724  NM_001008219         AMY1C
2    chr1  104250038      105807724  NM_001008221         AMY1A
4    chr1  104250038      105807724     NR_033990  LOC100129138
5   chr14   21833792       21959959  NM_001163380         RAB2B
6   chr14   21833792       21959959  NM_001170629          CHD8
7   chr14   21833792       21959959  NM_001303523          TOX4
8   chr14   21833792       21959959     NM_007192       SUPT16H
11  chr14   21833792       21959959     NR_002916        SNORD8
12  chr14   21833792       21959959     NR_003029        SNORD9
13  chr14   21801187       22243783  NM_001001912         OR4E2
14  chr14   21801187       22243783  NM_001005465        OR10G3
15  chr14   21801187       22243783  NM_001005466        OR10G2
16  chr14   21801187       22243783  NM_001163380         RAB2B
17  chr14   21801187       22243783  NM_001170629          CHD8
18  chr14   21801187       22243783  NM_001303523          TOX4
19  chr14   21801187       22243783  NM_001317107         OR4E1
20  chr14   21801187       22243783     NM_007192       SUPT16H
21  chr14   21801187       22243783     NM_019852        METTL3
22  chr14   21801187       22243783     NM_020366       RPGRIP1
25  chr14   21801187       22243783     NR_002916        SNORD8
26  chr14   21801187       22243783     NR_003029        SNORD9
27  chr14   21801187       22243783     NR_111966         SALL2
29   chr4   94196498       94458096     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21853828       22060054  NM_001005465    OR10G3
1   chr14   21853828       22060054  NM_001163380     RAB2B
2   chr14   21853828       22060054  NM_001170629      CHD8
3   chr14   21853828       22060054  NM_001303523      TOX4
4   chr14   21853828       22060054     NM_019852    METTL3
7   chr14   21853828       22060054     NR_002916    SNORD8
8   chr14   21853828       22060054     NR_003029    SNORD9
9   chr14   21853828       22060054     NR_111966     SALL2
11  chr16   68599974       68718090  NM_001305204     ZFP90
13  chr16   68599974       68718090  NM_001317195      CDH3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  187105744      187253057     NR_126347  LINC01036
1   chr14   21789391       21910815  NM_001170629       CHD8
2   chr14   21789391       21910815     NM_007192    SUPT16H
3   chr14   21789391       21910815     NM_020366    RPGRIP1
5   chr14   21789391       21910815     NR_002916     SNORD8
6   chr14   21789391       21910815     NR_003029     SNORD9
7   chr16   22223407       22402755  NM_001258033     POLR3E
8   chr16   22223407       22402755     NM_001802       CDR2
9   chr16   22223407       22402755     NM_013302      EEF2K
10  chr16   22223407       22402755     NR_136333    MFSD13B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   67313901       67834462     NM_000695       ALDH3B2
1   chr11   67313901       67834462     NM_000852         GSTP1
3   chr11   67313901       67834462  NM_001161473       ALDH3B1
4   chr11   67313901       67834462  NM_001166102        NDUFV1
5   chr11   67313901       67834462  NM_001243750         NUDT8
7   chr11   67313901       67834462     NM_002496        NDUFS8
8   chr11   67313901       67834462     NM_005995         TBX10
9   chr11   67313901       67834462     NM_006019        TCIRG1
11  chr11   67313901       67834462     NM_030930       UNC93B1
12  chr11   67313901       67834462     NM_080658          ACY3
14  chr11   67313901       67834462     NM_212469          CHKA
15  chr11   67313901       67834462     NR_024249      FAM86C2P
16  chr11   67313901       67834462     NR_033791        DOC2GP
17  chr11   67313901       67834462     NR_039840       MIR4691
18  chr11   67313901       67834462     NR_106811       MIR6753
19  chr11   67313901       67834462     NR_106963       MIR7113
20  chr11   67313901       67834462     NR_130935      C11orf72
21  chr14   21766928       22017848  NM_001163380         RAB2B
22  chr14   21766928       22017848  NM_001170629          CHD8
23  chr14   21766928       22017848  NM_001303523          TOX4
24  chr14   21766928       22017848     NM_007192       SUPT16H
25  chr14   21766928       22017848     NM_019852        METTL3
26  chr14   21766928       22017848     NM_020366       RPGRIP1
29  chr14   21766928       22017848     NR_002916        SNORD8
30  chr14   21766928       22017848     NR_003029        SNORD9
31  chr14   21766928       22017848     NR_111966         SALL2
33  chr16   21470861       21624871  NM_001077180        METTL9
35  chr16   21470861       21624871     NR_002594      SLC7A5P2
36  chr16   21470861       21624871     NR_027155        SMG1P3
37  chr16   21470861       21624871     NR_049833     MIR3680-2
38  chr16   21470861       21624871     NR_110930  LOC101927814
39   chr7  110405562      110743679  NM_001099658         LRRN3
40   chr7  110405562      110743679  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11   40724373       40861163  NM_001258419       LRRC4C
1   chr14   21797214       23020079  NM_001001912        OR4E2
2   chr14   21797214       23020079  NM_001005465       OR10G3
3   chr14   21797214       23020079  NM_001005466       OR10G2
4   chr14   21797214       23020079  NM_001163380        RAB2B
5   chr14   21797214       23020079  NM_001170629         CHD8
6   chr14   21797214       23020079  NM_001303523         TOX4
7   chr14   21797214       23020079  NM_001317107        OR4E1
8   chr14   21797214       23020079     NM_007192      SUPT16H
9   chr14   21797214       23020079     NM_019852       METTL3
10  chr14   21797214       23020079     NM_020366      RPGRIP1
13  chr14   21797214       23020079     NR_002916       SNORD8
14  chr14   21797214       23020079     NR_003029       SNORD9
15  chr14   21797214       23020079     NR_111966        SALL2
17   chr2   53520006       54896403  NM_001003937       TSPYL6
18   chr2   53520006       54896403  NM_001100396      C2orf73
19   chr2   53520006       54896403  NM_001164165   GPR75-ASB3
20   chr2   53520006       54896403  NM_001201965         ASB3
21   chr2   53520006       54896403  NM_001320587        ACYP2
24   chr2   53520006       54896403  NM_001346127        CHAC2
25   chr2   53520006       54896403     NM_003128       SPTBN1
26   chr2   53520006       54896403     NM_006794        GPR75
27   chr2   53520006       54896403     NM_014614        PSME4
28   chr2   53520006       54896403     NM_015701       ERLEC1
32   chr2   53520006       54896403     NR_002229    RPL23AP32
33   chr2   53520006       54896403     NR_037453      MIR3682
34  chr20   14707801       16056114  NM_001033087      MACROD2
36  chr20   14707801       16056114     NR_037841  MACROD2-AS1
38  chr20   14707801       16056114     NR_130924    LOC613266
40   chr7   53254528       53879275     NR_038371    LINC01446,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63148757       63292145     NR_047029     LINC00448
1   chr14   21799235       22082857  NM_001005465        OR10G3
2   chr14   21799235       22082857  NM_001163380         RAB2B
3   chr14   21799235       22082857  NM_001170629          CHD8
4   chr14   21799235       22082857  NM_001303523          TOX4
5   chr14   21799235       22082857     NM_007192       SUPT16H
6   chr14   21799235       22082857     NM_019852        METTL3
7   chr14   21799235       22082857     NM_020366       RPGRIP1
10  chr14   21799235       22082857     NR_002916        SNORD8
11  chr14   21799235       22082857     NR_003029        SNORD9
12  chr14   21799235       22082857     NR_111966         SALL2
14   chr4   47972310       48118825     NM_000087         CNGA1
16   chr4   47972310       48118825     NM_003328           TXK
17   chr4   47972310       48118825     NM_207330        NIPAL1
18   chr4   47972310       48118825     NR_125879  LOC101927157
19   chr4   94049512       94268736     NM_001510         GRID2
20   chr9   11975944       13570006     NM_000550         TYRP1
21   chr9   11975944       13570006  NM_001261407          MPDZ
23   chr9   11975944       13570006     NM_203403       LURAP1L
24   chr9   11975944       13570006     NR_033863      FLJ41200
25   chr9   11975944       13570006     NR_125775   LURAP1L-AS1
26   chr9   11975944       13570006     NR_132976      SNORD137,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21845508       21965218  NM_001163380         RAB2B
1   chr14   21845508       21965218  NM_001170629          CHD8
2   chr14   21845508       21965218  NM_001303523          TOX4
3   chr14   21845508       21965218     NM_007192       SUPT16H
6   chr14   21845508       21965218     NR_002916        SNORD8
7   chr14   21845508       21965218     NR_003029        SNORD9
8   chr20   14864339       15332477  NM_001033087       MACROD2
10  chr20   14864339       15332477     NR_037841   MACROD2-AS1
12   chr7  124999269      125170788     NR_110188  LOC101928283
13   chr9   39117494       39304867     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67698553       67808285  NM_001127384    CTNNA3
2   chr14   21825012       21991149  NM_001163380     RAB2B
3   chr14   21825012       21991149  NM_001170629      CHD8
4   chr14   21825012       21991149  NM_001303523      TOX4
5   chr14   21825012       21991149     NM_007192   SUPT16H
6   chr14   21825012       21991149     NM_019852    METTL3
9   chr14   21825012       21991149     NR_002916    SNORD8
10  chr14   21825012       21991149     NR_003029    SNORD9
11  chr14   21825012       21991149     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21885675       22112896  NM_001005465        OR10G3
1   chr14   21885675       22112896  NM_001005466        OR10G2
2   chr14   21885675       22112896  NM_001163380         RAB2B
3   chr14   21885675       22112896  NM_001170629          CHD8
4   chr14   21885675       22112896  NM_001303523          TOX4
5   chr14   21885675       22112896     NM_019852        METTL3
8   chr14   21885675       22112896     NR_111966         SALL2
10  chr20   14653363       14918770     NM_080676       MACROD2
11  chr20   14653363       14918770     NR_037841   MACROD2-AS1
13   chr4   81858676       82164431     NM_001201          BMP3
14   chr4   81858676       82164431  NM_001206997       C4orf22
15   chr4   81858676       82164431  NM_001282483         PRKG2
17   chr4   81858676       82164431     NR_125908  LOC101928942,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4156229        4270467     NM_001033          RRM1
2   chr11    4156229        4270467     NR_047550  LOC100506082
3   chr14   21935630       22113461  NM_001005465        OR10G3
4   chr14   21935630       22113461  NM_001005466        OR10G2
5   chr14   21935630       22113461  NM_001163380         RAB2B
6   chr14   21935630       22113461  NM_001303523          TOX4
7   chr14   21935630       22113461     NM_019852        METTL3
9   chr14   21935630       22113461     NR_111966         SALL2
11  chr22   19891822       20035204     NM_000754          COMT
14  chr22   19891822       20035204  NM_001282512        TXNRD2
15  chr22   19891822       20035204  NM_001283116        TANGO2
18  chr22   19891822       20035204     NM_001670         ARVCF
21  chr22   19891822       20035204     NR_029706        MIR185
22  chr22   19891822       20035204     NR_039918       MIR4761
23   chr9   28700710       28954721  NM_001258282        LINGO2
25   chr9   28700710       28954721     NR_030597        MIR876
26   chr9   28700710       28954721     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   95854225       96147463  NM_001261833      JRKL
1   chr11   95854225       96147463  NM_001318737    CCDC82
3   chr11   95854225       96147463     NM_032427     MAML2
4   chr11   95854225       96147463     NR_036125  MIR1260B
5   chr14   21791718       21968582  NM_001163380     RAB2B
6   chr14   21791718       21968582  NM_001170629      CHD8
7   chr14   21791718       21968582  NM_001303523      TOX4
8   chr14   21791718       21968582     NM_007192   SUPT16H
9   chr14   21791718       21968582     NM_019852    METTL3
10  chr14   21791718       21968582     NM_020366   RPGRIP1
13  chr14   21791718       21968582     NR_002916    SNORD8
14  chr14   21791718       21968582     NR_003029    SNORD9
15  chr14   21895902       22253256  NM_001001912     OR4E2
16  chr14   21895902       22253256  NM_001005465    OR10G3
17  chr14   21895902       22253256  NM_001005466    OR10G2
18  chr14   21895902       22253256  NM_001163380     RAB2B
19  chr14   21895902       22253256  NM_001170629      CHD8
20  chr14   21895902       22253256  NM_001303523      TOX4
21  chr14   21895902       22253256  NM_001317107     OR4E1
22  chr14   21895902       22253256     NM_019852    METTL3
25  chr14   21895902       22253256     NR_111966     SALL2
27   chr7  110617988      110911993  NM_001099658     LRRN3
28   chr7  110617988      110911993  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21765264       21931369  NM_001163380         RAB2B
1   chr14   21765264       21931369  NM_001170629          CHD8
2   chr14   21765264       21931369     NM_007192       SUPT16H
3   chr14   21765264       21931369     NM_020366       RPGRIP1
6   chr14   21765264       21931369     NR_002916        SNORD8
7   chr14   21765264       21931369     NR_003029        SNORD9
8    chr6   20824311       21305558     NM_017774        CDKAL1
9    chr7   83025893       83181149  NM_001178129        SEMA3E
11   chr7  124993016      125254769     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68101608       68204794  NM_001127384        CTNNA3
2   chr16   14990958       15104133  NM_001285445        PDXDC1
8   chr16   14990958       15104133     NM_006985        NPIPA1
9   chr16   14990958       15104133     NR_036140     MIR3179-1
10  chr16   14990958       15104133     NR_036141     MIR3180-1
11  chr16   14990958       15104133     NR_036142     MIR3180-2
12  chr16   14990958       15104133     NR_103772  LOC100288162
13  chr16   14990958       15104133     NR_106970     MIR6511A3
14  chr16   14990958       15104133     NR_107060     MIR6770-2
15  chr16   14990958       15104133     NR_128713     MIR3670-4
16  chr21   28179838       28464260     NM_006988       ADAMTS1
17  chr21   28179838       28464260     NM_007038       ADAMTS5
18  chr21   28179838       28464260     NR_039916       MIR4759
19   chr6   92059799       92321902     NR_039786       MIR4643,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21476211       22065289  NM_001077180        METTL9
1   chr16   21476211       22065289  NM_001161683          OTOA
2   chr16   21476211       22065289  NM_001164579      C16orf52
4   chr16   21476211       22065289  NM_001310148        NPIPB4
5   chr16   21476211       22065289     NM_003366        UQCRC2
6   chr16   21476211       22065289     NM_005849         IGSF6
9   chr16   21476211       22065289     NM_173806         PDZD9
10  chr16   21476211       22065289     NR_002594      SLC7A5P2
11  chr16   21476211       22065289     NR_003370        RRN3P1
12  chr16   21476211       22065289     NR_027155        SMG1P3
13  chr16   21476211       22065289     NR_049833     MIR3680-2
14  chr16   21476211       22065289     NR_110930  LOC101927814
15  chr16   68552741       68709335  NM_001305204         ZFP90
17  chr16   68552741       68709335  NM_001317195          CDH3
18  chr20   14710423       15229692  NM_001033087       MACROD2
20  chr20   14710423       15229692     NR_037841   MACROD2-AS1
22   chr4   94122033       94290012     NM_001510         GRID2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12  130287298      130467026     NM_133448      TMEM132D
1   chr2  186270488      187007245     NM_173651         FSIP2
2   chr2  186270488      187007245     NR_110214  LOC101927196
5   chr2  186270488      187007245     NR_110218     LINC01473
6   chr2  186270488      187007245     NR_144453     FSIP2-AS1
8   chr7   71499634       71640425  NM_001017440         CALN1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21764820       21917693  NM_001170629      CHD8
1   chr14   21764820       21917693     NM_007192   SUPT16H
2   chr14   21764820       21917693     NM_020366   RPGRIP1
4   chr14   21764820       21917693     NR_002916    SNORD8
5   chr14   21764820       21917693     NR_003029    SNORD9
6   chr16   12199811       14047701  NM_001099455    CPPED1
7   chr16   12199811       14047701  NM_001145204    SHISA9
9   chr16   12199811       14047701     NM_005236     ERCC4
10  chr16   12199811       14047701     NM_032167     SNX29
11  chr16   12199811       14047701     NR_039869   MIR4718
12  chr20   25377977       25601886  NM_001318226      NINL
13  chr20   25377977       25601886     NM_021067     GINS1
14  chr20   25377977       25601886     NM_152667      NANP
15   chr7  146528525      146663150     NM_014141   CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr10   67998896       68132696  NM_001127384             CTNNA3
2   chr14   21793193       22011668  NM_001163380              RAB2B
3   chr14   21793193       22011668  NM_001170629               CHD8
4   chr14   21793193       22011668  NM_001303523               TOX4
5   chr14   21793193       22011668     NM_007192            SUPT16H
6   chr14   21793193       22011668     NM_019852             METTL3
7   chr14   21793193       22011668     NM_020366            RPGRIP1
10  chr14   21793193       22011668     NR_002916             SNORD8
11  chr14   21793193       22011668     NR_003029             SNORD9
12  chr14   21793193       22011668     NR_111966              SALL2
14  chr16   21471499       22637697  NM_001077180             METTL9
15  chr16   21471499       22637697  NM_001135865             NPIPB5
16  chr16   21471499       22637697  NM_001161683               OTOA
17  chr16   21471499       22637697  NM_001164579           C16orf52
18  chr16   21471499       22637697  NM_001258033             POLR3E
20  chr16   21471499       22637697  NM_001310148             NPIPB4
21  chr16   21471499       22637697     NM_001802               CDR2
22  chr16   21471499       22637697     NM_003366             UQCRC2
23  chr16   21471499       22637697     NM_005849              IGSF6
24  chr16   21471499       22637697     NM_013302              EEF2K
27  chr16   21471499       22637697     NM_173615              VWA3A
28  chr16   21471499       22637697     NM_173806              PDZD9
29  chr16   21471499       22637697     NR_002594           SLC7A5P2
30  chr16   21471499       22637697     NR_003370             RRN3P1
31  chr16   21471499       22637697     NR_003676          LOC653786
32  chr16   21471499       22637697     NR_027154             SMG1P1
33  chr16   21471499       22637697     NR_027155             SMG1P3
34  chr16   21471499       22637697     NR_027460             RRN3P3
35  chr16   21471499       22637697     NR_049833          MIR3680-2
36  chr16   21471499       22637697     NR_110930       LOC101927814
37  chr16   21471499       22637697     NR_136333            MFSD13B
38  chr22   17103503       17210047     NR_001591             TPTEP1
39  chr22   17103503       17210047     NR_040115  ANKRD62P1-PARP4P3
40   chr9   39089089       39195629     NM_033655            CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   30029721       31447079     NM_002379         MATN1
1    chr1   30029721       31447079     NM_006762        LAPTM5
2    chr1   30029721       31447079     NM_014654          SDC3
3    chr1   30029721       31447079     NM_014676          PUM1
4    chr1   30029721       31447079     NR_003066     SNORD103C
5    chr1   30029721       31447079     NR_004054     SNORD103A
7    chr1   30029721       31447079     NR_034182     MATN1-AS1
8    chr1   30029721       31447079     NR_039616       MIR4420
9    chr1   30029721       31447079     NR_110790  LOC101929406
10  chr10   67962347       68473045  NM_001127384        CTNNA3
12  chr11   64930274       65269011  NM_001004326      SLC22A20
13  chr11   64930274       65269011  NM_001008778         SPDYC
14  chr11   64930274       65269011  NM_001198868         CAPN1
16  chr11   64930274       65269011  NM_001278250      SLC25A45
18  chr11   64930274       65269011  NM_001330308          DPF2
19  chr11   64930274       65269011     NM_002689         POLA2
21  chr11   64930274       65269011     NM_006779      CDC42EP2
22  chr11   64930274       65269011     NM_031904         FRMD8
23  chr11   64930274       65269011     NM_145719         TIGD3
25  chr11   64930274       65269011     NR_002819        MALAT1
26  chr11   64930274       65269011     NR_028272         NEAT1
27  chr11   64930274       65269011     NR_030343        MIR612
31  chr14   21833536       21972464  NM_001163380         RAB2B
32  chr14   21833536       21972464  NM_001170629          CHD8
33  chr14   21833536       21972464  NM_001303523          TOX4
34  chr14   21833536       21972464     NM_007192       SUPT16H
35  chr14   21833536       21972464     NM_019852        METTL3
38  chr14   21833536       21972464     NR_002916        SNORD8
39  chr14   21833536       21972464     NR_003029        SNORD9
40  chr17   29357204       29496851     NM_000267           NF1
42  chr17   29357204       29496851     NR_039886       MIR4733
43   chr7  110546277      111057490  NM_001099658         LRRN3
44   chr7  110546277      111057490  NM_001244606        IMMP2L
46   chr7  110746847      110915133  NM_001099658         LRRN3
47   chr7  110746847      110915133  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68058777       68235641  NM_001127384        CTNNA3
2   chr11    4164638        4367657     NR_047550  LOC100506082
3   chr11  122014765      122202945     NR_024430      MIR100HG
4   chr11  122014765      122202945     NR_029477     MIRLET7A2
5   chr11  122014765      122202945     NR_029515        MIR100
12  chr14   21737381       21889104  NM_001170629          CHD8
13  chr14   21737381       21889104     NM_007192       SUPT16H
14  chr14   21737381       21889104     NM_020366       RPGRIP1
16  chr14   21737381       21889104     NM_031314        HNRNPC
17  chr14   21737381       21889104     NR_002916        SNORD8
18  chr14   21737381       21889104     NR_003029        SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  244980869      245700026  NM_001143943        EFCAB2
2    chr1  244980869      245700026  NM_001312871         COX20
4    chr1  244980869      245700026     NM_004501        HNRNPU
5    chr1  244980869      245700026     NM_018012        KIF26B
8    chr1  244980869      245700026     NR_111907  LOC101928068
9    chr1  244980869      245700026     NR_132782      SNORA100
10  chr10   81509452       81624024     NR_029407     LOC642361
11  chr10   81509452       81624024     NR_120611    NUTM2B-AS1
14  chr14   21795867       22019776  NM_001163380         RAB2B
15  chr14   21795867       22019776  NM_001170629          CHD8
16  chr14   21795867       22019776  NM_001303523          TOX4
17  chr14   21795867       22019776     NM_007192       SUPT16H
18  chr14   21795867       22019776     NM_019852        METTL3
19  chr14   21795867       22019776     NM_020366       RPGRIP1
22  chr14   21795867       22019776     NR_002916        SNORD8
23  chr14   21795867       22019776     NR_003029        SNORD9
24  chr14   21795867       22019776     NR_111966         SALL2
26   chr3    4274660        4436083  NM_001164675         SUMF1
27   chr3    4274660        4436083  NM_001243723        SETMAR
29   chr7  110574308      110734839  NM_001099658         LRRN3
30   chr7  110574308      110734839  NM_001244606        IMMP2L
32   chr7  110528252      110762115  NM_001099658         LRRN3
33   chr7  110528252      110762115  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21883554       22013523  NM_001163380      RAB2B
1   chr14   21883554       22013523  NM_001170629       CHD8
2   chr14   21883554       22013523  NM_001303523       TOX4
3   chr14   21883554       22013523     NM_019852     METTL3
6   chr14   21883554       22013523     NR_111966      SALL2
8   chr15   28672937       28851186     NR_033351    GOLGA8F
9   chr15   28672937       28851186     NR_033353    GOLGA8G
10  chr15   28672937       28851186     NR_039734  MIR4509-3
11  chr16   21804993       21905562  NM_001310148     NPIPB4
12  chr16   21804993       21905562     NR_003370     RRN3P1
13   chr6  162742137      162855468     NM_013988      PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143738517      143918245  NM_001123068       PPIAL4G
1    chr1  143738517      143918245  NM_001287385        FAM72C
2    chr1  143738517      143918245  NM_001345942        FAM72D
6    chr1  143738517      143918245     NR_104014     LINC01138
8    chr2  167127045      167242730     NM_002977         SCN9A
9    chr2  167127045      167242730     NR_110260  LOC101929680
10  chr20   14639237       14765333     NM_080676       MACROD2
11   chr3  160115347      160260271  NM_001190241         IFT80
12   chr3  160115347      160260271  NM_001288753          SMC4
13   chr3  160115347      160260271     NM_002268         KPNA4
15   chr3  160115347      160260271     NM_173084        TRIM59
16   chr3  160115347      160260271     NR_003001       SCARNA7
17   chr3  160115347      160260271     NR_029525       MIR16-2
18   chr3  160115347      160260271     NR_029663        MIR15B
19   chr7  110693232      110838753  NM_001099658         LRRN3
20   chr7  110693232      110838753  NM_001244606        IMMP2L
22   chr9   41469224       41581930  NM_001113541     SPATA31A5
23   chr9   41469224       41581930     NM_015667     SPATA31A7
24   chr9   41469224       41581930     NR_026803       FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   21917567       22024324  NM_001163380         RAB2B
1  chr14   21917567       22024324  NM_001303523          TOX4
2  chr14   21917567       22024324     NM_019852        METTL3
4  chr14   21917567       22024324     NR_111966         SALL2
6   chr6  136943971      137091791     NM_005923        MAP3K5
7   chr6  136943971      137091791     NR_125858  LOC101928461,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   71703873       71876856     NR_047699  LINC00348
1  chr16   18483111       18606235  NM_001004060      NOMO2
2  chr16   18483111       18606235     NR_003569    ABCC6P1
3  chr16   18483111       18606235     NR_036140  MIR3179-1
4  chr16   18483111       18606235     NR_036142  MIR3180-2
5  chr16   18483111       18606235     NR_036144  MIR3180-3
6  chr16   18483111       18606235     NR_037442  MIR3670-1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  104595129      104782072     NR_034064     CASP12
1   chr11  104595129      104782072     NR_034078  LOC643733
2   chr14   21822347       22006189  NM_001163380      RAB2B
3   chr14   21822347       22006189  NM_001170629       CHD8
4   chr14   21822347       22006189  NM_001303523       TOX4
5   chr14   21822347       22006189     NM_007192    SUPT16H
6   chr14   21822347       22006189     NM_019852     METTL3
9   chr14   21822347       22006189     NR_002916     SNORD8
10  chr14   21822347       22006189     NR_003029     SNORD9
11  chr14   21822347       22006189     NR_111966      SALL2
13   chr4   30688280       30866270  NM_001173523      PCDH7,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28639364       28886027     NR_033351       GOLGA8F
1   chr15   28639364       28886027     NR_033353       GOLGA8G
2   chr15   28639364       28886027     NR_039734     MIR4509-3
4   chr16   18375849       18713521  NM_001004060         NOMO2
5   chr16   18375849       18713521  NM_001282511        NPIPA8
6   chr16   18375849       18713521     NR_003569       ABCC6P1
7   chr16   18375849       18713521     NR_036140     MIR3179-1
8   chr16   18375849       18713521     NR_036142     MIR3180-2
9   chr16   18375849       18713521     NR_036144     MIR3180-3
10  chr16   18375849       18713521     NR_037442     MIR3670-1
11  chr16   18375849       18713521     NR_103772  LOC100288162
12  chr16   18375849       18713521     NR_106971     MIR6511A4
13  chr16   18375849       18713521     NR_107060     MIR6770-2
14  chr16   21554382       21677724  NM_001077180        METTL9
16  chr16   21554382       21677724     NM_005849         IGSF6
17  chr16   21554382       21677724     NR_110930  LOC101927814
18  chr22   20089863       20224481  NM_001190326         DGCR8
19  chr22   20089863       20224481  NM_001243537       CCDC188
20  chr22   20089863       20224481  NM_001278639        RANBP1
23  chr22   20089863       20224481     NM_013373        ZDHHC8
24  chr22   20089863       20224481     NM_022727        TRMT2A
25  chr22   20089863       20224481     NR_026919     LINC00896
26  chr22   20089863       20224481     NR_038460     LOC284865
27  chr22   20089863       20224481     NR_106874       MIR6816
28   chr3    1162062        1333672  NM_001289081         CNTN6
29   chr3   60202302       60305488  NM_001320899          FHIT
30   chr7  110970613      111192328  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83469309       83674527  NM_001142699          DLG2
4   chr14   21797221       21927529  NM_001163380         RAB2B
5   chr14   21797221       21927529  NM_001170629          CHD8
6   chr14   21797221       21927529     NM_007192       SUPT16H
7   chr14   21797221       21927529     NM_020366       RPGRIP1
10  chr14   21797221       21927529     NR_002916        SNORD8
11  chr14   21797221       21927529     NR_003029        SNORD9
12  chr14   37576451       37714134  NM_001171170      SLC25A21
13  chr14   37576451       37714134  NM_001195296        MIPOL1
14  chr14   37576451       37714134     NR_033240  SLC25A21-AS1
15  chr15   28287555       28407217     NM_000275          OCA2
17  chr15   28287555       28407217     NM_004667         HERC2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21887112       22038088  NM_001005465        OR10G3
1   chr14   21887112       22038088  NM_001163380         RAB2B
2   chr14   21887112       22038088  NM_001170629          CHD8
3   chr14   21887112       22038088  NM_001303523          TOX4
4   chr14   21887112       22038088     NM_019852        METTL3
7   chr14   21887112       22038088     NR_111966         SALL2
9   chr15   28216421       28617619     NM_000275          OCA2
11  chr15   28216421       28617619     NM_004667         HERC2
12   chr4  190518053      190668739     NR_121679     LINC01262
13   chr4  190518053      190668739     NR_135513  LOC105379514,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12843225       12981123  NM_001009611    PRAMEF4
1    chr1   12843225       12981123  NM_001012276    PRAMEF8
2    chr1   12843225       12981123  NM_001013631   HNRNPCL1
3    chr1   12843225       12981123  NM_001146181   HNRNPCL3
4    chr1   12843225       12981123  NM_001146344   PRAMEF11
5    chr1   12843225       12981123  NM_001294139    PRAMEF1
6    chr1   12843225       12981123  NM_001302551   HNRNPCL4
8    chr1   12843225       12981123     NM_023014    PRAMEF2
9   chr10   67660925       68621508  NM_001127384     CTNNA3
11  chr14   21663946       21793129     NM_020366    RPGRIP1
12  chr14   21663946       21793129     NM_031314     HNRNPC
13  chr14   21663946       21793129     NR_038970  LINC00641
15  chr22   19031903       19143415  NM_001184781      DGCR2
16  chr22   19031903       19143415     NM_005315       GSC2
17  chr22   19031903       19143415     NM_022719     DGCR14
18  chr22   19031903       19143415     NM_053006      TSSK2
19  chr22   19031903       19143415     NR_024157     DGCR11
20   chr4   69309555       69410311     NM_001077    UGT2B17
21   chr4   69309555       69410311     NM_014058  TMPRSS11E
22   chr9   38870067       39868441  NM_001085452  SPATA31A1
23   chr9   38870067       39868441     NM_033655    CNTNAP3
24   chr9   38870067       39868441     NR_003528    ZNF658B
25   chr9   38870067       39868441     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21929288       22082538  NM_001005465    OR10G3
1  chr14   21929288       22082538  NM_001163380     RAB2B
2  chr14   21929288       22082538  NM_001303523      TOX4
3  chr14   21929288       22082538     NM_019852    METTL3
5  chr14   21929288       22082538     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21923474       22104444  NM_001005465     OR10G3
1   chr14   21923474       22104444  NM_001005466     OR10G2
2   chr14   21923474       22104444  NM_001163380      RAB2B
3   chr14   21923474       22104444  NM_001303523       TOX4
4   chr14   21923474       22104444     NM_019852     METTL3
6   chr14   21923474       22104444     NR_111966      SALL2
8   chr15   85611385       85768656  NM_001243137      PDE8A
10  chr15   85611385       85768656     NR_049748  LOC642423
11   chr9   39039389       39233096     NM_033655    CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11  131980963      132090649  NM_001048209          NTM
3   chr14   21784287       22086579  NM_001005465       OR10G3
4   chr14   21784287       22086579  NM_001163380        RAB2B
5   chr14   21784287       22086579  NM_001170629         CHD8
6   chr14   21784287       22086579  NM_001303523         TOX4
7   chr14   21784287       22086579     NM_007192      SUPT16H
8   chr14   21784287       22086579     NM_019852       METTL3
9   chr14   21784287       22086579     NM_020366      RPGRIP1
12  chr14   21784287       22086579     NR_002916       SNORD8
13  chr14   21784287       22086579     NR_003029       SNORD9
14  chr14   21784287       22086579     NR_111966        SALL2
16   chr2   25027398       25316733  NM_001198559      DNAJC27
17   chr2   25027398       25316733  NM_001319099        EFR3B
18   chr2   25027398       25316733  NM_001320613        ADCY3
19   chr2   25027398       25316733  NM_001322101        CENPO
21   chr2   25027398       25316733     NR_034113  DNAJC27-AS1
22   chr9   39087425       39387283  NM_001085452    SPATA31A1
23   chr9   39087425       39387283     NM_033655      CNTNAP3
24   chr9   39087425       39387283     NR_026803      FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  233744867      233937399     NM_002245         KCNK1
1    chr1  233744867      233937399     NR_039625       MIR4427
2   chr15   28724039       28978279  NM_001282468       GOLGA8M
3   chr15   28724039       28978279     NR_033351       GOLGA8F
4   chr15   28724039       28978279     NR_033353       GOLGA8G
5   chr15   28724039       28978279     NR_036443       HERC2P9
6   chr15   28724039       28978279     NR_039734     MIR4509-3
7   chr16   21471570       21742765  NM_001077180        METTL9
8   chr16   21471570       21742765  NM_001161683          OTOA
10  chr16   21471570       21742765     NM_005849         IGSF6
13  chr16   21471570       21742765     NR_002594      SLC7A5P2
14  chr16   21471570       21742765     NR_027155        SMG1P3
15  chr16   21471570       21742765     NR_049833     MIR3680-2
16  chr16   21471570       21742765     NR_110930  LOC101927814
17  chr18   19172248       19297880  NM_001291916        SNRPD1
18  chr18   19172248       19297880  NM_001308256         ABHD3
20  chr18   19172248       19297880     NM_052911         ESCO1
21  chr18   19172248       19297880     NR_031565      MIR320C1
22  chr20   14656126       14982588     NM_080676       MACROD2
23  chr20   14656126       14982588     NR_037841   MACROD2-AS1
25   chr5  109805415      109967216  NM_001039763       TMEM232
26   chr5  109805415      109967216     NR_031644      MIR548F3,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr11   67245148       67402759     NM_000852         GSTP1
1    chr11   67245148       67402759  NM_001166102        NDUFV1
2    chr11   67245148       67402759  NM_001243750         NUDT8
3    chr11   67245148       67402759  NM_001302959           AIP
4    chr11   67245148       67402759  NM_001318496         CABP2
6    chr11   67245148       67402759     NM_004910       PITPNM1
7    chr11   67245148       67402759     NM_005851       CDK2AP2
8    chr11   67245148       67402759     NM_005995         TBX10
10   chr11   67245148       67402759     NR_033791        DOC2GP
12   chr11   67245148       67402759     NR_106810       MIR6752
13   chr11   67245148       67402759     NR_130935      C11orf72
14   chr12     663144        1631592  NM_001294345         NINJ2
16   chr12     663144        1631592  NM_001297419         RAD52
20   chr12     663144        1631592  NM_001301248          ERC1
22   chr12     663144        1631592     NM_018979          WNK1
23   chr12     663144        1631592     NM_173593      B4GALNT3
25   chr12     663144        1631592     NR_028415     LINC00942
26   chr12     663144        1631592     NR_122124  LOC100049716
27   chr12     663144        1631592     NR_134624  LOC105369595
28   chr14   21832457       24516913     NM_000257          MYH7
29   chr14   21832457       24516913  NM_001001912         OR4E2
30   chr14   21832457       24516913  NM_001005465        OR10G3
31   chr14   21832457       24516913  NM_001005466        OR10G2
32   chr14   21832457       24516913  NM_001039619         PRMT5
33   chr14   21832457       24516913  NM_001042635          NGDN
34   chr14   21832457       24516913  NM_001099780        PSMB11
35   chr14   21832457       24516913  NM_001126105        SLC7A7
37   chr14   21832457       24516913  NM_001130706      C14orf93
38   chr14   21832457       24516913  NM_001130725         PSMB5
40   chr14   21832457       24516913  NM_001146028          JPH4
..     ...        ...            ...           ...           ...
65   chr14   21832457       24516913     NM_001344          DAD1
66   chr14   21832457       24516913     NM_001805         CEBPE
67   chr14   21832457       24516913     NM_002471          MYH6
70   chr14   21832457       24516913     NM_004643        PABPN1
71   chr14   21832457       24516913     NM_004995         MMP14
72   chr14   21832457       24516913     NM_005015         OXA1L
73   chr14   21832457       24516913     NM_007192       SUPT16H
75   chr14   21832457       24516913     NM_017815         HAUS4
76   chr14   21832457       24516913     NM_017924     C14orf119
77   chr14   21832457       24516913     NM_018107         RBM23
78   chr14   21832457       24516913     NM_019852        METTL3
79   chr14   21832457       24516913     NM_020834         HOMEZ
81   chr14   21832457       24516913     NM_022060         ABHD4
82   chr14   21832457       24516913     NM_022478         CDH24
83   chr14   21832457       24516913     NM_022789          IL25
86   chr14   21832457       24516913     NM_033400         ZFHX2
87   chr14   21832457       24516913     NM_138460         CMTM5
89   chr14   21832457       24516913     NM_173527          REM2
93   chr14   21832457       24516913     NR_002916        SNORD8
94   chr14   21832457       24516913     NR_003029        SNORD9
95   chr14   21832457       24516913     NR_023921     DHRS4-AS1
97   chr14   21832457       24516913     NR_029595       MIR208A
98   chr14   21832457       24516913     NR_030624       MIR208B
99   chr14   21832457       24516913     NR_039856       MIR4707
103  chr14   21832457       24516913     NR_102688       DHRS4L1
105  chr14   21832457       24516913     NR_110002  LOC101926933
107  chr14   21832457       24516913     NR_110555  LOC102724814
108  chr14   21832457       24516913     NR_111966         SALL2
110  chr14   21832457       24516913     NR_120599     PRMT5-AS1
111  chr14   21832457       24516913     NR_126491          MHRT

[80 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr12  128514339      128842882  NM_001136103      TMEM132C
1  chr12  128514339      128842882     NR_037406       MIR3612
2  chr12  128514339      128842882     NR_039720      MIR4419B
3  chr12  128514339      128842882     NR_104647  LOC100996679
4  chr12  128514339      128842882     NR_104648  LOC101927694
5  chr20   14806845       15241129  NM_001033087       MACROD2
7  chr20   14806845       15241129     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28724340       29805499  NM_001130414         APBA2
1   chr15   28724340       29805499  NM_001282468       GOLGA8M
2   chr15   28724340       29805499     NM_015307      FAM189A1
3   chr15   28724340       29805499     NM_138704        NSMCE3
4   chr15   28724340       29805499     NR_026589       WHAMMP2
5   chr15   28724340       29805499     NR_033351       GOLGA8F
6   chr15   28724340       29805499     NR_033353       GOLGA8G
7   chr15   28724340       29805499     NR_036443       HERC2P9
8   chr15   28724340       29805499     NR_036475  LOC100289656
9   chr15   28724340       29805499     NR_037599     PDCD6IPP2
10  chr15   28724340       29805499     NR_039734     MIR4509-3
11  chr15   28724340       29805499     NR_047567     GOLGA6L7P
12   chr5  161062318      161686879     NM_000806        GABRA1
13   chr5  161062318      161686879     NM_000811        GABRA6
14   chr5  161062318      161686879     NM_000816        GABRG2
19   chr5  161062318      161686879     NR_126372     LINC01202
20   chr9   28671615       28950254  NM_001258282        LINGO2
22   chr9   28671615       28950254     NR_030597        MIR876
23   chr9   28671615       28950254     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   79760930       79950782     NR_104660  LINC01229
2   chr16   79760930       79950782     NR_104663     MAFTRR
3   chr22   19040600       19153899  NM_001184781      DGCR2
4   chr22   19040600       19153899     NM_005315       GSC2
5   chr22   19040600       19153899     NM_022719     DGCR14
6   chr22   19040600       19153899     NM_053006      TSSK2
7    chr4  128494392      128605351     NM_015693       INTU
8    chr6   65571132       65883468  NM_001142800        EYS
9    chr7  110653447      110959056  NM_001099658      LRRN3
10   chr7  110653447      110959056  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21772477       21939632  NM_001163380     RAB2B
1   chr14   21772477       21939632  NM_001170629      CHD8
2   chr14   21772477       21939632     NM_007192   SUPT16H
3   chr14   21772477       21939632     NM_020366   RPGRIP1
6   chr14   21772477       21939632     NR_002916    SNORD8
7   chr14   21772477       21939632     NR_003029    SNORD9
8   chr14   26680442       26986506     NM_002515     NOVA1
10  chr20   25369616       25516427  NM_001042472    ABHD12
11  chr20   25369616       25516427  NM_001318226      NINL
13  chr20   25369616       25516427     NM_021067     GINS1
14   chr7   94230134       94339997  NM_001184962     PEG10
15   chr7   94230134       94339997  NM_001301139      SGCE,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143616871      144800686  NM_001123068       PPIAL4G
1   chr1  143616871      144800686  NM_001135789       PPIAL4C
2   chr1  143616871      144800686  NM_001277444         NBPF9
3   chr1  143616871      144800686  NM_001278267        NBPF20
4   chr1  143616871      144800686  NM_001287385        FAM72C
5   chr1  143616871      144800686  NM_001345942        FAM72D
9   chr1  143616871      144800686     NR_003242        PFN1P2
10  chr1  143616871      144800686     NR_024511     LINC00623
12  chr1  143616871      144800686     NR_102405         NBPF8
13  chr1  143616871      144800686     NR_104014     LINC01138
14  chr1  143616871      144800686     NR_106967       MIR6077
15  chr1  143616871      144800686     NR_111930  LOC100132057
16  chr1  143616871      144800686     NR_111953     LINC00869
18  chr5   99477022       99940509     NM_198507       FAM174A
19  chr5   99477022       99940509     NR_027503  LOC100133050
20  chr6   97408543       97531038  NM_001286251        KLHL32
24  chr6  162325731      162493237     NM_013988         PARK2
25  chr9   22338428       22695910     NM_022160        DMRTA1
26  chr9   22338428       22695910     NR_038977     LINC01239,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21538808       22001668  NM_001077180        METTL9
1   chr16   21538808       22001668  NM_001161683          OTOA
3   chr16   21538808       22001668  NM_001310148        NPIPB4
4   chr16   21538808       22001668     NM_003366        UQCRC2
5   chr16   21538808       22001668     NM_005849         IGSF6
8   chr16   21538808       22001668     NM_173806         PDZD9
9   chr16   21538808       22001668     NR_003370        RRN3P1
10  chr16   21538808       22001668     NR_110930  LOC101927814
11  chr16   68549080       68669474  NM_001305204         ZFP90
13  chr16   68574502       68676835  NM_001305204         ZFP90
15  chr20   14693564       14823281     NM_080676       MACROD2
16  chr22   17216749       17339600     NM_175878          XKR3
17  chr22   17216749       17339600     NR_003607       HSFY1P1
18  chr22   17216749       17339600     NR_134584  LOC101929350
19   chr6  162848156      162998877     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   12673060       12819668  NM_001013630   AADACL4
1    chr1   12673060       12819668  NM_001103170   AADACL3
2    chr1   12673060       12819668  NM_001319225     DHRS3
4    chr1   12673060       12819668     NM_152290  C1orf158
5    chr1  233745066      234070725     NM_002245     KCNK1
6    chr1  233745066      234070725     NM_173508   SLC35F3
7    chr1  233745066      234070725     NR_039625   MIR4427
8   chr14   21707029       22082388  NM_001005465    OR10G3
9   chr14   21707029       22082388  NM_001163380     RAB2B
10  chr14   21707029       22082388  NM_001170629      CHD8
11  chr14   21707029       22082388  NM_001303523      TOX4
12  chr14   21707029       22082388     NM_007192   SUPT16H
13  chr14   21707029       22082388     NM_019852    METTL3
14  chr14   21707029       22082388     NM_020366   RPGRIP1
16  chr14   21707029       22082388     NM_031314    HNRNPC
18  chr14   21707029       22082388     NR_002916    SNORD8
19  chr14   21707029       22082388     NR_003029    SNORD9
20  chr14   21707029       22082388     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   91955171       92154424  NM_001134419          CDC7
2    chr1   91955171       92154424  NM_001195683        TGFBR3
4   chr13   23174690       23568636     NR_033774       BASP1P1
5   chr13   23174690       23568636     NR_138043     LINC00621
6   chr16    8647583        8772923     NM_020686          ABAT
7   chr16    8647583        8772923     NM_024109       METTL22
8   chr16   16394708       17081821  NM_001282511        NPIPA8
9   chr16   16394708       17081821     NR_036141     MIR3180-1
10  chr16   16394708       17081821     NR_036142     MIR3180-2
11  chr16   16394708       17081821     NR_036447        PKD1P1
12  chr16   16394708       17081821     NR_103772  LOC100288162
13  chr16   16394708       17081821     NR_106766     MIR6511A1
14  chr16   16394708       17081821     NR_106971     MIR6511A4
15  chr16   16394708       17081821     NR_107060     MIR6770-2
16  chr16   16394708       17081821     NR_128713     MIR3670-4
17   chr3   17310410       17436608  NM_001134381        TBC1D5
19   chr7  110746112      110878439  NM_001099658         LRRN3
20   chr7  110746112      110878439  NM_001244606        IMMP2L
22   chr9    4383964        5856642  NM_001039395       SPATA6L
23   chr9    4383964        5856642  NM_001135920          RIC1
24   chr9    4383964        5856642  NM_001199853           AK3
28   chr9    4383964        5856642  NM_001286699          RCL1
30   chr9    4383964        5856642  NM_001314029         CD274
31   chr9    4383964        5856642  NM_001322194          JAK2
34   chr9    4383964        5856642  NM_001329191          RLN2
35   chr9    4383964        5856642     NM_002195         INSL4
36   chr9    4383964        5856642     NM_004170        SLC1A1
39   chr9    4383964        5856642     NM_006911          RLN1
40   chr9    4383964        5856642     NM_007179         INSL6
43   chr9    4383964        5856642     NM_017913       CDC37L1
44   chr9    4383964        5856642     NM_018465        PLGRKT
45   chr9    4383964        5856642     NM_024896         ERMP1
46   chr9    4383964        5856642     NM_025239      PDCD1LG2
47   chr9    4383964        5856642     NM_203453         PLPP6
48   chr9    4383964        5856642     NR_029836      MIR101-2
49   chr9    4383964        5856642     NR_121597   CDC37L1-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   29484419       29616561     NR_049833     MIR3680-2
1  chr16   29484419       29616561     NR_135305        SMG1P2
3  chr19   23629289       23977210     NM_138286        ZNF681
4  chr19   23629289       23977210     NM_138330        ZNF675
5  chr19   23629289       23977210     NR_003662       RPSAP58
6   chr7  146582327      147063574     NM_014141       CNTNAP2
7   chr7  146582327      147063574     NR_110829  LOC101928700
8   chr9   28232396       28356281  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21507630       21616074  NM_001077180        METTL9
2   chr16   21507630       21616074     NR_002594      SLC7A5P2
3   chr16   21507630       21616074     NR_027155        SMG1P3
4   chr16   21507630       21616074     NR_049833     MIR3680-2
5   chr16   21507630       21616074     NR_110930  LOC101927814
6   chr16   22185221       22405525  NM_001258033        POLR3E
7   chr16   22185221       22405525     NM_001802          CDR2
8   chr16   22185221       22405525     NM_013302         EEF2K
9   chr16   22185221       22405525     NR_136333       MFSD13B
10  chr16   88489077       89027971     NM_000101          CYBA
11  chr16   88489077       89027971     NM_000485          APRT
12  chr16   88489077       89027971     NM_000512         GALNS
13  chr16   88489077       89027971  NM_001012762          CTU2
14  chr16   88489077       89027971  NM_001127464        ZNF469
15  chr16   88489077       89027971  NM_001142864        PIEZO1
16  chr16   88489077       89027971  NM_001171815        RNF166
18  chr16   88489077       89027971  NM_001290330  LOC100129697
19  chr16   88489077       89027971  NM_001294328       PABPN1L
20  chr16   88489077       89027971  NM_001294340        ZC3H18
21  chr16   88489077       89027971  NM_001318532      TRAPPC2L
23  chr16   88489077       89027971     NM_002461           MVD
24  chr16   88489077       89027971     NM_005187       CBFA2T3
25  chr16   88489077       89027971     NM_013278         IL17C
26  chr16   88489077       89027971     NM_030928          CDT1
27  chr16   88489077       89027971     NM_153813         ZFPM1
29  chr16   88489077       89027971     NM_178310         SNAI3
31  chr16   88489077       89027971     NR_024399     SNAI3-AS1
33  chr16   88489077       89027971     NR_039873       MIR4722
34  chr16   88489077       89027971     NR_049821       MIR5189
35  chr16   88489077       89027971     NR_103774  LOC100289580
36  chr16   88489077       89027971     NR_120387     LOC339059
38  chr16   88489077       89027971     NR_135194  LOC101927793
39  chr17   14024638       14362755  NM_001007530        CDRT15
40  chr17   14024638       14362755     NM_001303         COX10
41  chr17   14024638       14362755     NM_006041      HS3ST3B1
42  chr17   14024638       14362755     NR_026880      MGC12916
43  chr20   14707346       14978342     NM_080676       MACROD2
44  chr20   14707346       14978342     NR_037841   MACROD2-AS1
46   chr6  140887067      141016103     NR_039675       MIR4465
47   chr7   64066245       64194270  NM_001282360        ZNF107
48   chr7   64066245       64194270     NR_077227  LOC100128885
50   chr7   64066245       64194270     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28734252       29045401  NM_001282468       GOLGA8M
1   chr15   28734252       29045401     NR_026589       WHAMMP2
2   chr15   28734252       29045401     NR_033351       GOLGA8F
3   chr15   28734252       29045401     NR_033353       GOLGA8G
4   chr15   28734252       29045401     NR_036443       HERC2P9
5   chr15   28734252       29045401     NR_036475  LOC100289656
6   chr15   28734252       29045401     NR_037599     PDCD6IPP2
7   chr15   28734252       29045401     NR_039734     MIR4509-3
8   chr19   21419440       21598716  NM_001297560        ZNF708
11  chr19   21419440       21598716     NM_145326        ZNF493
13  chr19   21419440       21598716     NR_027130        ZNF738
14  chr21   22629678       22751422     NM_004540         NCAM2
15   chr7   69095955       69282840  NM_001127231         AUTS2
17   chr7  110406075      110506273  NM_001244606        IMMP2L
19   chr7  110521839      110719846  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21932314       22137052  NM_001001912         OR4E2
1   chr14   21932314       22137052  NM_001005465        OR10G3
2   chr14   21932314       22137052  NM_001005466        OR10G2
3   chr14   21932314       22137052  NM_001163380         RAB2B
4   chr14   21932314       22137052  NM_001303523          TOX4
5   chr14   21932314       22137052     NM_019852        METTL3
7   chr14   21932314       22137052     NR_111966         SALL2
9   chr16    8668478        8774911     NM_020686          ABAT
10  chr16    8668478        8774911     NM_024109       METTL22
11   chr2  110087800      110245411  NM_001099289        SH3RF3
12   chr2  214221035      214515111     NM_024532        SPAG16
13   chr4    3931113        4436697  NM_001040101          NSG1
14   chr4    3931113        4436697  NM_001145725          LYAR
15   chr4    3931113        4436697  NM_001297551       TMEM128
16   chr4    3931113        4436697  NM_001346282         STX18
21   chr4    3931113        4436697     NM_145291        ZBTB49
22   chr4    3931113        4436697     NM_177998         OTOP1
23   chr4    3931113        4436697     NR_130741       FAM86EP
24   chr7   56933892       57216295     NM_033273        ZNF479
25   chr7   56933892       57216295     NR_036246     MIR4283-1
26   chr7   56933892       57216295     NR_038450  LOC100130849,    chrom  cnv_start  cnv_terminate    tx_name          gene_name
0  chr10   81485747       81600911  NR_029407          LOC642361
1  chr10   81485747       81600911  NR_120611         NUTM2B-AS1
4  chr22   17075837       17412927  NM_175878               XKR3
5  chr22   17075837       17412927  NR_001591             TPTEP1
6  chr22   17075837       17412927  NR_003607            HSFY1P1
7  chr22   17075837       17412927  NR_040115  ANKRD62P1-PARP4P3
8  chr22   17075837       17412927  NR_134584       LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21873587       21994520  NM_001163380         RAB2B
1   chr14   21873587       21994520  NM_001170629          CHD8
2   chr14   21873587       21994520  NM_001303523          TOX4
3   chr14   21873587       21994520     NM_019852        METTL3
6   chr14   21873587       21994520     NR_111966         SALL2
8    chr2   97151534       97462311  NM_001115016        KANSL3
9    chr2   97151534       97462311  NM_001285485        NEURL3
10   chr2   97151534       97462311  NM_001293083        FER1L5
11   chr2   97151534       97462311  NM_001319085        ARID5A
13   chr2   97151534       97462311  NM_001322354        LMAN2L
14   chr2   97151534       97462311     NM_020184         CNNM4
18   chr2   97151534       97462311     NR_135564  LOC105373496,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    6747420        6879426  NM_001004489        OR2AG1
1   chr11    6747420        6879426  NM_001004490        OR2AG2
2   chr11    6747420        6879426     NM_003696         OR6A2
3   chr11    6747420        6879426     NM_178168        OR10A5
4   chr14   21837410       22209884  NM_001001912         OR4E2
5   chr14   21837410       22209884  NM_001005465        OR10G3
6   chr14   21837410       22209884  NM_001005466        OR10G2
7   chr14   21837410       22209884  NM_001163380         RAB2B
8   chr14   21837410       22209884  NM_001170629          CHD8
9   chr14   21837410       22209884  NM_001303523          TOX4
10  chr14   21837410       22209884  NM_001317107         OR4E1
11  chr14   21837410       22209884     NM_007192       SUPT16H
12  chr14   21837410       22209884     NM_019852        METTL3
15  chr14   21837410       22209884     NR_002916        SNORD8
16  chr14   21837410       22209884     NR_003029        SNORD9
17  chr14   21837410       22209884     NR_111966         SALL2
19   chr9   44334195       44668183     NR_121564  LOC101927827
20   chr9   44334195       44668183     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18111859       18538432  NM_001004060         NOMO2
1   chr16   18111859       18538432  NM_001282511        NPIPA8
2   chr16   18111859       18538432     NR_036140     MIR3179-1
3   chr16   18111859       18538432     NR_036142     MIR3180-2
4   chr16   18111859       18538432     NR_036144     MIR3180-3
5   chr16   18111859       18538432     NR_037442     MIR3670-1
6   chr16   18111859       18538432     NR_103772  LOC100288162
7   chr16   18111859       18538432     NR_106971     MIR6511A4
8   chr16   18111859       18538432     NR_107060     MIR6770-2
9    chr2   53464490       53899616  NM_001164165    GPR75-ASB3
10   chr2   53464490       53899616  NM_001201965          ASB3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143751778      143889461  NM_001123068       PPIAL4G
1    chr1  143998225      145423491  NM_001002810       PDE4DIP
4    chr1  143998225      145423491  NM_001135789       PPIAL4C
9    chr1  143998225      145423491  NM_001277444         NBPF9
10   chr1  143998225      145423491  NM_001278267        NBPF20
11   chr1  143998225      145423491  NM_001302371        NBPF10
12   chr1  143998225      145423491     NM_004892        SEC22B
14   chr1  143998225      145423491     NM_145277          HFE2
15   chr1  143998225      145423491     NM_203458      NOTCH2NL
16   chr1  143998225      145423491     NR_003242        PFN1P2
17   chr1  143998225      145423491     NR_024511     LINC00623
19   chr1  143998225      145423491     NR_102405         NBPF8
20   chr1  143998225      145423491     NR_104217       NBPF25P
21   chr1  143998225      145423491     NR_111953     LINC00869
22   chr1  143998225      145423491     NR_125967  LOC101928979
23  chr10  117378163      118247020  NM_001011709      PNLIPRP3
24  chr10  117378163      118247020     NM_005264         GFRA1
26  chr10  117378163      118247020     NM_198515       CCDC172
27  chr10  117378163      118247020     NM_207303        ATRNL1
28   chr4  121660689      122136104  NM_001128843         TNIP3
30   chr4  121660689      122136104     NM_018699         PRDM5
31   chr4  121660689      122136104     NM_024574          NDNF,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   89369462       89796073     NM_001946         DUSP6
1   chr12   89369462       89796073     NR_038385     LOC728084
2   chr14   21820551       21948283  NM_001163380         RAB2B
3   chr14   21820551       21948283  NM_001170629          CHD8
4   chr14   21820551       21948283  NM_001303523          TOX4
5   chr14   21820551       21948283     NM_007192       SUPT16H
8   chr14   21820551       21948283     NR_002916        SNORD8
9   chr14   21820551       21948283     NR_003029        SNORD9
10   chr4  165964551      166875427  NM_001100389       TMEM192
11   chr4  165964551      166875427  NM_001161522         KLHL2
12   chr4  165964551      166875427  NM_001204760          TLL1
13   chr4  165964551      166875427     NM_001873           CPE
14   chr4  165964551      166875427     NM_006745         MSMO1
17   chr4  165964551      166875427     NR_026575          GK3P
18   chr4  165964551      166875427     NR_030304        MIR578
19   chr4  165964551      166875427     NR_121676     LINC01179
20   chr4  165964551      166875427     NR_121677  LOC101928131
21   chr8    7820353        8266040  NM_001080826         PRAG1
22   chr8    7820353        8266040  NM_001256871       USP17L3
23   chr8    7820353        8266040  NM_001256872       USP17L8
24   chr8    7820353        8266040     NR_003668    DEFB109P1B
25   chr8    7820353        8266040     NR_024361      FAM86B3P
28   chr8    7820353        8266040     NR_027424        FAM66E
29   chr8    7820353        8266040     NR_031689      MIR548I3
30   chr9   30364702       30725517     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   37996712       38236175  NM_001195296         MIPOL1
1   chr14   37996712       38236175  NM_001310135           TTC6
2   chr14   37996712       38236175     NM_004496          FOXA1
3   chr15   28713861       28825878     NR_033351        GOLGA8F
4   chr15   28713861       28825878     NR_033353        GOLGA8G
5   chr15   28713861       28825878     NR_039734      MIR4509-3
6   chr16   15138052       15249562  NM_001270767          NTAN1
7   chr16   15138052       15249562  NM_001285449         PDXDC1
8   chr16   15138052       15249562  NM_001301064           RRN3
10  chr16   15138052       15249562     NR_037466      MIR3180-4
11  chr16   15138052       15249562     NR_106775      MIR6511B1
12  chr16   15138052       15249562     NR_106965      MIR6511B2
13  chr16   15138052       15249562     NR_123721  PKD1P6-NPIPP1
15  chr16   15138052       15249562     NR_125434   LOC100505915
16  chr16   29481820       29919878  NM_001030288            SPN
17  chr16   29481820       29919878  NM_001114099         SEZ6L2
18  chr16   29481820       29919878  NM_001256269          KIF22
20  chr16   29481820       29919878  NM_001256443          PRRT2
21  chr16   29481820       29919878  NM_001276275            MAZ
22  chr16   29481820       29919878  NM_001286585          CDIPT
23  chr16   29481820       29919878  NM_001293204            MVP
24  chr16   29481820       29919878  NM_001318249           QPRT
28  chr16   29481820       29919878     NM_024516          PAGR1
29  chr16   29481820       29919878     NM_152338           ZG16
30  chr16   29481820       29919878     NM_175900       C16orf54
31  chr16   29481820       29919878     NM_178863         KCTD13
32  chr16   29481820       29919878     NM_181718         ASPHD1
33  chr16   29481820       29919878     NR_015396      CDIPT-AS1
35  chr16   29481820       29919878     NR_049833      MIR3680-2
36  chr16   29481820       29919878     NR_135305         SMG1P2
38   chr2   35361652       37480781  NM_001032377        SULT6B1
39   chr2   35361652       37480781  NM_001135652        EIF2AK2
40   chr2   35361652       37480781  NM_001177969            VIT
42   chr2   35361652       37480781  NM_001278505       GPATCH11
43   chr2   35361652       37480781  NM_001322374        CEBPZOS
45   chr2   35361652       37480781     NM_003162           STRN
46   chr2   35361652       37480781     NM_005102           FEZ2
47   chr2   35361652       37480781     NM_005760          CEBPZ
48   chr2   35361652       37480781     NM_005813          PRKD3
49   chr2   35361652       37480781     NM_016441          CRIM1
50   chr2   35361652       37480781     NM_019024        HEATR5B
51   chr2   35361652       37480781     NM_144736        NDUFAF7
52   chr2   35361652       37480781     NR_037631   LOC100288911
53   chr2   35361652       37480781     NR_039629       MIR548AD
55   chr2   84652027       85247494  NM_001080824        TRABD2A
57   chr2   84652027       85247494     NM_001370          DNAH6
58   chr2   84652027       85247494     NM_003849         SUCLG1
59   chr2   84652027       85247494     NM_020122          KCMF1
60   chr2   84652027       85247494     NM_021103         TMSB10,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   37877159       38109887     NR_135110  LOC105376633
1    chr2  132006708      133328063  NM_001077637        WTH3DI
2    chr2  132006708      133328063  NM_001083538         POTEE
3    chr2  132006708      133328063  NM_001085365         MZT2A
4    chr2  132006708      133328063  NM_001258304       CCDC74A
5    chr2  132006708      133328063  NM_001304449        ZNF806
6    chr2  132006708      133328063     NM_001508         GPR39
7    chr2  132006708      133328063     NM_013310      C2orf27A
8    chr2  132006708      133328063     NM_080386        TUBA3D
9    chr2  132006708      133328063     NM_214461      C2orf27B
10   chr2  132006708      133328063     NR_002826       NOC2LP2
11   chr2  132006708      133328063     NR_026922     LOC150776
12   chr2  132006708      133328063     NR_027019     ANKRD30BL
14   chr2  132006708      133328063     NR_030728     LOC440910
15   chr2  132006708      133328063     NR_031608       MIR663B
16   chr2  132006708      133328063     NR_033885        POTEKP
17   chr2  132006708      133328063     NR_036499     LINC01120
18   chr2  132006708      133328063     NR_039945       MIR4784
19   chr2  132006708      133328063     NR_108087     LINC01087
20   chr2  132006708      133328063     NR_135203       FAM201B
21  chr22   17176599       17600518  NM_001037814          GAB4
22  chr22   17176599       17600518  NM_001163079         CECR6
23  chr22   17176599       17600518  NM_001289905        IL17RA
25  chr22   17176599       17600518     NM_175878          XKR3
26  chr22   17176599       17600518     NR_003607       HSFY1P1
27  chr22   17176599       17600518     NR_015352         CECR7
28  chr22   17176599       17600518     NR_134584  LOC101929350
29   chr4  128724091      129029700  NM_001190801          PLK4
30   chr4  128724091      129029700  NM_001278604        LARP1B
31   chr4  128724091      129029700  NM_001317381        HSPA4L
34   chr4  128724091      129029700  NM_001319305        ABHD18
37   chr4  128724091      129029700     NM_152778         MFSD8
39   chr7  110740875      110976013  NM_001099658         LRRN3
40   chr7  110740875      110976013  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21780622       21914422  NM_001170629      CHD8
1   chr14   21780622       21914422     NM_007192   SUPT16H
2   chr14   21780622       21914422     NM_020366   RPGRIP1
4   chr14   21780622       21914422     NR_002916    SNORD8
5   chr14   21780622       21914422     NR_003029    SNORD9
6   chr16   21714135       21837361  NM_001161683      OTOA
9   chr16   21714135       21837361     NR_003370    RRN3P1
10   chr9    6030844        6596717     NM_000170      GLDC
11   chr9    6030844        6596717  NM_001001874   TPD52L3
12   chr9    6030844        6596717  NM_001199641      IL33
16   chr9    6030844        6596717     NM_152896     UHRF2
17   chr9    7990732        8586199     NM_002839     PTPRD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   22207635       22320372     NR_015416     LOC727924
1   chr15   22207635       22320372     NR_110480  LOC101927079
3   chr15   28595038       29261479  NM_001130414         APBA2
4   chr15   28595038       29261479  NM_001282468       GOLGA8M
5   chr15   28595038       29261479     NR_026589       WHAMMP2
6   chr15   28595038       29261479     NR_033351       GOLGA8F
8   chr15   28595038       29261479     NR_033353       GOLGA8G
10  chr15   28595038       29261479     NR_036443       HERC2P9
11  chr15   28595038       29261479     NR_036475  LOC100289656
12  chr15   28595038       29261479     NR_037599     PDCD6IPP2
13  chr15   28595038       29261479     NR_039734     MIR4509-3
15  chr15   28595038       29261479     NR_047567     GOLGA6L7P
16   chr2  153093183      153304595     NM_052905         FMNL2
17   chr2  193475947      193676465     NR_002769        PCGEM1
18  chr20   14905111       16673280  NM_001033087       MACROD2
19  chr20   14905111       16673280  NM_001199866        KIF16B
22  chr20   14905111       16673280     NR_037841   MACROD2-AS1
24  chr20   14905111       16673280     NR_130924     LOC613266
26   chr4   69226801       69477537     NM_001077       UGT2B17
27   chr4   69226801       69477537     NM_014058     TMPRSS11E
28   chr9   28719809       28838435  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21927631       22034072  NM_001163380         RAB2B
1   chr14   21927631       22034072  NM_001303523          TOX4
2   chr14   21927631       22034072     NM_019852        METTL3
4   chr14   21927631       22034072     NR_111966         SALL2
6    chr7   64038740       64184170  NM_001282360        ZNF107
7    chr7   64038740       64184170     NR_033245     LOC641746
8    chr7   64038740       64184170     NR_077227  LOC100128885
10   chr7   64038740       64184170     NR_106898       MIR6839
11   chr9   41459084       42000129  NM_001113541     SPATA31A5
12   chr9   41459084       42000129     NM_015667     SPATA31A7
13   chr9   41459084       42000129     NR_003528       ZNF658B
14   chr9   41459084       42000129     NR_003670        FGF7P3
15   chr9   41459084       42000129     NR_015363         GLIDR
16   chr9   41459084       42000129     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21826802       22183794  NM_001001912         OR4E2
1   chr14   21826802       22183794  NM_001005465        OR10G3
2   chr14   21826802       22183794  NM_001005466        OR10G2
3   chr14   21826802       22183794  NM_001163380         RAB2B
4   chr14   21826802       22183794  NM_001170629          CHD8
5   chr14   21826802       22183794  NM_001303523          TOX4
6   chr14   21826802       22183794  NM_001317107         OR4E1
7   chr14   21826802       22183794     NM_007192       SUPT16H
8   chr14   21826802       22183794     NM_019852        METTL3
11  chr14   21826802       22183794     NR_002916        SNORD8
12  chr14   21826802       22183794     NR_003029        SNORD9
13  chr14   21826802       22183794     NR_111966         SALL2
15  chr14   45516194       45728839  NM_001308120       FAM179B
16  chr14   45516194       45728839  NM_001308133         FANCM
18  chr14   45516194       45728839     NM_002013         FKBP3
19  chr14   45516194       45728839     NM_017922        PRPF39
20  chr14   45516194       45728839     NM_018353      MIS18BP1
21  chr14   45516194       45728839     NR_003691      SNORD127
22   chr2   57023471       58621479  NM_001130481          VRK2
25   chr2   57023471       58621479     NM_018062         FANCL
26   chr4   69264738       69388242     NM_014058     TMPRSS11E
27   chr4  169227036      169581613  NM_001012967        DDX60L
28   chr4  169227036      169581613  NM_001166108         PALLD
31   chr4  169227036      169581613     NM_017631         DDX60
32   chr5   95346962       95475521     NR_030309        MIR583
33   chr5   95346962       95475521     NR_130776  LOC101929710
34   chr6   62050195       62488253  NM_001190706      MTRNR2L9
35   chr6   62050195       62488253     NM_152688       KHDRBS2
36   chr7  111293025      111590258     NM_014705         DOCK4
37   chr7  111293025      111590258     NR_103806     DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  128513759      128687732     NR_104647  LOC100996679
1   chr12  128513759      128687732     NR_104648  LOC101927694
2   chr14   21911946       22052987  NM_001005465        OR10G3
3   chr14   21911946       22052987  NM_001163380         RAB2B
4   chr14   21911946       22052987  NM_001303523          TOX4
5   chr14   21911946       22052987     NM_019852        METTL3
7   chr14   21911946       22052987     NR_111966         SALL2
9   chr16   28413606       29109061     NM_000086          CLN3
10  chr16   28413606       29109061  NM_001014989           LAT
12  chr16   28413606       29109061  NM_001042483         NUPR1
13  chr16   28413606       29109061     NM_001054       SULT1A2
14  chr16   28413606       29109061  NM_001142448         SPNS1
15  chr16   28413606       29109061  NM_001145795         SH2B1
17  chr16   28413606       29109061  NM_001199142         EIF3C
19  chr16   28413606       29109061  NM_001286075        ATP2A1
25  chr16   28413606       29109061  NM_001287251        NPIPB9
27  chr16   28413606       29109061  NM_001310136        NPIPB8
28  chr16   28413606       29109061  NM_001317856        EIF3CL
30  chr16   28413606       29109061     NM_001770          CD19
31  chr16   28413606       29109061     NM_003321          TUFM
35  chr16   28413606       29109061     NM_018690         APOBR
36  chr16   28413606       29109061     NM_024816        RABEP2
37  chr16   28413606       29109061     NM_032815      NFATC2IP
38  chr16   28413606       29109061     NM_138414         SGF29
39  chr16   28413606       29109061     NM_145659          IL27
40  chr16   28413606       29109061     NM_148416        ATXN2L
42  chr16   28413606       29109061     NM_177529       SULT1A1
45  chr16   28413606       29109061     NR_003369        RRN3P2
46  chr16   28413606       29109061     NR_039742       MIR4517
47  chr16   28413606       29109061     NR_039872       MIR4721
48  chr16   28413606       29109061     NR_046287    ATP2A1-AS1
49  chr16   28413606       29109061     NR_107058     MIR6862-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21924455       22065757  NM_001005465        OR10G3
1   chr14   21924455       22065757  NM_001163380         RAB2B
2   chr14   21924455       22065757  NM_001303523          TOX4
3   chr14   21924455       22065757     NM_019852        METTL3
5   chr14   21924455       22065757     NR_111966         SALL2
7   chr14   42078789       42345730  NM_001346175         LRFN5
8    chr2   35528394       35696680     NR_039629      MIR548AD
9   chr20   40611125       40711261     NM_133170         PTPRT
10   chr6  116492062      118049748  NM_001010892        RSPH4A
11   chr6  116492062      118049748  NM_001085480       FAM162B
12   chr6  116492062      118049748  NM_001139444      TRAPPC3L
13   chr6  116492062      118049748  NM_001276460        FAM26F
14   chr6  116492062      118049748  NM_001286355        GPRC6A
15   chr6  116492062      118049748  NM_001322939           DSE
18   chr6  116492062      118049748     NM_002269         KPNA5
19   chr6  116492062      118049748     NM_002944          ROS1
20   chr6  116492062      118049748     NM_003309        TSPYL1
21   chr6  116492062      118049748     NM_015952         RWDD1
22   chr6  116492062      118049748     NM_020399          GOPC
23   chr6  116492062      118049748     NM_021648        TSPYL4
24   chr6  116492062      118049748     NM_138459          NUS1
25   chr6  116492062      118049748     NM_145062         ZUFSP
26   chr6  116492062      118049748     NM_152729        NT5DC1
27   chr6  116492062      118049748     NM_153036        FAM26D
28   chr6  116492062      118049748     NM_153453         VGLL2
29   chr6  116492062      118049748     NM_153711        FAM26E
30   chr6  116492062      118049748     NM_173560          RFX6
31   chr6  116492062      118049748     NM_173674        DCBLD1
32   chr6  116492062      118049748     NR_110854  LOC101927919,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   99166706       99332843  NM_001243270         CNTN5
2   chr14   21839753       21991816  NM_001163380         RAB2B
3   chr14   21839753       21991816  NM_001170629          CHD8
4   chr14   21839753       21991816  NM_001303523          TOX4
5   chr14   21839753       21991816     NM_007192       SUPT16H
6   chr14   21839753       21991816     NM_019852        METTL3
9   chr14   21839753       21991816     NR_002916        SNORD8
10  chr14   21839753       21991816     NR_003029        SNORD9
11  chr14   21839753       21991816     NR_111966         SALL2
13  chr16   10535714       10689724  NM_001256160       ATF7IP2
14  chr16   10535714       10689724     NM_001424          EMP2
16  chr16   83104852       83248234  NM_001220488         CDH13
18   chr2  112337296      114183690     NM_000575          IL1A
19   chr2  112337296      114183690     NM_000576          IL1B
20   chr2  112337296      114183690     NM_000577         IL1RN
21   chr2  112337296      114183690  NM_001128165         FBLN7
22   chr2  112337296      114183690  NM_001164463         RGPD8
23   chr2  112337296      114183690  NM_001278568         IL36G
24   chr2  112337296      114183690  NM_001282772        POLR1B
25   chr2  112337296      114183690  NM_001304353        CHCHD5
27   chr2  112337296      114183690  NM_001304361        CKAP2L
28   chr2  112337296      114183690     NM_003466          PAX8
29   chr2  112337296      114183690     NM_005054         RGPD5
30   chr2  112337296      114183690     NM_005415       SLC20A1
31   chr2  112337296      114183690     NM_006343         MERTK
32   chr2  112337296      114183690     NM_012275        IL36RN
33   chr2  112337296      114183690     NM_012455          PSD4
34   chr2  112337296      114183690     NM_014438         IL36B
35   chr2  112337296      114183690     NM_014439          IL37
36   chr2  112337296      114183690     NM_014440         IL36A
38   chr2  112337296      114183690     NM_022662        ANAPC1
39   chr2  112337296      114183690     NM_032494         ZC3H8
40   chr2  112337296      114183690     NM_032556        IL1F10
41   chr2  112337296      114183690     NM_032824       TMEM87B
42   chr2  112337296      114183690     NM_153712           TTL
48   chr2  112337296      114183690     NM_198581         ZC3H6
49   chr2  112337296      114183690     NR_015377      PAX8-AS1
50   chr2  112337296      114183690     NR_033871      FLJ42351
51   chr2  112337296      114183690     NR_039929     MIR4771-2
53   chr2  112337296      114183690     NR_136321  LOC105373562,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr12   57710401       57856270  NM_001160045         GLI1
2   chr12   57710401       57856270  NM_001330122       R3HDM2
3   chr12   57710401       57856270     NM_005538        INHBC
5   chr12   57710401       57856270     NM_031479        INHBE
6   chr14   21948501       22260837  NM_001001912        OR4E2
7   chr14   21948501       22260837  NM_001005465       OR10G3
8   chr14   21948501       22260837  NM_001005466       OR10G2
9   chr14   21948501       22260837  NM_001303523         TOX4
10  chr14   21948501       22260837  NM_001317107        OR4E1
11  chr14   21948501       22260837     NM_019852       METTL3
12  chr14   21948501       22260837     NR_111966        SALL2
14  chr16   21827392       21941115  NM_001310148       NPIPB4
15  chr16   21827392       21941115     NR_003370       RRN3P1
16  chr16   68596884       68798154  NM_001305204        ZFP90
18  chr16   68596884       68798154  NM_001317184         CDH1
19  chr16   68596884       68798154  NM_001317195         CDH3
20  chr16   68596884       68798154     NR_106988    MIR7641-2
21  chr20   14741642       14897983     NM_080676      MACROD2
22  chr20   14741642       14897983     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  121963938      122248360  NM_001001786          BLID
1   chr11  121963938      122248360     NR_024430      MIR100HG
2   chr11  121963938      122248360     NR_029477     MIRLET7A2
3   chr11  121963938      122248360     NR_029515        MIR100
4   chr11  121963938      122248360     NR_029671      MIR125B1
15  chr16   29531943       29700969  NM_001030288           SPN
16  chr16   29531943       29700969  NM_001318249          QPRT
18  chr16   29531943       29700969     NR_049833     MIR3680-2
19  chr16   29531943       29700969     NR_135305        SMG1P2
21  chr20   14790705       14972114     NM_080676       MACROD2
22  chr20   14790705       14972114     NR_037841   MACROD2-AS1
24   chr7   12204809       12633356  NM_001112706          SCIN
25   chr7   12204809       12633356  NM_001134232      TMEM106B
26   chr7   12204809       12633356  NM_001135924          VWDE
28   chr7   12204809       12633356     NR_136261  LOC102725191
31   chr7   93306487       93430873     NR_039796       MIR4652
32   chr9   41527508       41987290     NR_003528       ZNF658B
33   chr9   41527508       41987290     NR_003670        FGF7P3
34   chr9   41527508       41987290     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81511487       81623166     NR_029407     LOC642361
1   chr10   81511487       81623166     NR_120611    NUTM2B-AS1
4   chr14   21788687       22329732  NM_001001912         OR4E2
5   chr14   21788687       22329732  NM_001005465        OR10G3
6   chr14   21788687       22329732  NM_001005466        OR10G2
7   chr14   21788687       22329732  NM_001163380         RAB2B
8   chr14   21788687       22329732  NM_001170629          CHD8
9   chr14   21788687       22329732  NM_001303523          TOX4
10  chr14   21788687       22329732  NM_001317107         OR4E1
11  chr14   21788687       22329732     NM_007192       SUPT16H
12  chr14   21788687       22329732     NM_019852        METTL3
13  chr14   21788687       22329732     NM_020366       RPGRIP1
16  chr14   21788687       22329732     NR_002916        SNORD8
17  chr14   21788687       22329732     NR_003029        SNORD9
18  chr14   21788687       22329732     NR_111966         SALL2
20  chr16   18178710       18467619  NM_001282511        NPIPA8
21  chr16   18178710       18467619     NR_103772  LOC100288162
22  chr16   18178710       18467619     NR_106971     MIR6511A4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21787057       21936631  NM_001163380         RAB2B
1   chr14   21787057       21936631  NM_001170629          CHD8
2   chr14   21787057       21936631     NM_007192       SUPT16H
3   chr14   21787057       21936631     NM_020366       RPGRIP1
6   chr14   21787057       21936631     NR_002916        SNORD8
7   chr14   21787057       21936631     NR_003029        SNORD9
8    chr2   97135893       97434503  NM_001115016        KANSL3
9    chr2   97135893       97434503  NM_001285485        NEURL3
10   chr2   97135893       97434503  NM_001293083        FER1L5
11   chr2   97135893       97434503  NM_001319085        ARID5A
13   chr2   97135893       97434503  NM_001322354        LMAN2L
14   chr2   97135893       97434503     NM_020184         CNNM4
18   chr2   97135893       97434503     NR_135564  LOC105373496
19   chr6  140847448      143325584  NM_001286372          VTA1
20   chr6  140847448      143325584  NM_001324308          NMBR
22   chr6  140847448      143325584     NM_006734        HIVEP2
23   chr6  140847448      143325584     NM_198569        ADGRG6
24   chr6  140847448      143325584     NR_027311     LOC153910
26   chr6  140847448      143325584     NR_038987     LINC01277
27   chr6  140847448      143325584     NR_039675       MIR4465
28   chr7  110980076      111129657  NM_001244606        IMMP2L
30   chr7  121459922      122803031  NM_001024613         FEZF1
31   chr7  121459922      122803031  NM_001206838        PTPRZ1
32   chr7  121459922      122803031  NM_001324400       SLC13A1
33   chr7  121459922      122803031     NM_005763          AASS
34   chr7  121459922      122803031     NM_016945       TAS2R16
35   chr7  121459922      122803031     NM_017954        CADPS2
36   chr7  121459922      122803031     NM_139175        RNF133
37   chr7  121459922      122803031     NM_198085        RNF148
38   chr7  121459922      122803031     NR_036484     FEZF1-AS1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143679876      143828123  NM_001123068       PPIAL4G
1   chr1  143679876      143828123     NR_104014     LINC01138
2   chr1  143679876      143828123     NR_111930  LOC100132057
3   chr2   47051106       47207066  NM_001171506         MCFD2
6   chr2   47051106       47207066  NM_001288951         TTC7A
8   chr2   47051106       47207066     NR_024452     LINC01119
9   chr4   94123315       94481578     NM_001510         GRID2
10  chr5   23778986       24059974     NR_131245       C5orf17
11  chr8   22956783       23117966  NM_001317899         CHMP7
12  chr8   22956783       23117966     NM_003840     TNFRSF10D
13  chr8   22956783       23117966     NM_003841     TNFRSF10C
14  chr8   22956783       23117966     NM_003844     TNFRSF10A
16  chr8   22956783       23117966     NR_033928     LOC389641
17  chr8   22956783       23117966     NR_046173     LOC254896,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   89314210       89740090     NR_038385  LOC728084
1   chr14   21848737       22865074  NM_001001912      OR4E2
2   chr14   21848737       22865074  NM_001005465     OR10G3
3   chr14   21848737       22865074  NM_001005466     OR10G2
4   chr14   21848737       22865074  NM_001163380      RAB2B
5   chr14   21848737       22865074  NM_001170629       CHD8
6   chr14   21848737       22865074  NM_001303523       TOX4
7   chr14   21848737       22865074  NM_001317107      OR4E1
8   chr14   21848737       22865074     NM_007192    SUPT16H
9   chr14   21848737       22865074     NM_019852     METTL3
12  chr14   21848737       22865074     NR_002916     SNORD8
13  chr14   21848737       22865074     NR_003029     SNORD9
14  chr14   21848737       22865074     NR_111966      SALL2
16   chr7  110487511      110631513  NM_001244606     IMMP2L
18   chr8    6537573        6647845     NM_018361     AGPAT5
19   chr8    6537573        6647845     NR_039803   MIR4659A
20   chr8    6537573        6647845     NR_039807   MIR4659B
21   chr8    6537573        6647845     NR_125386  MCPH1-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   48349910       48454205  NM_001005513    OR4C45
1   chr14   21843232       21990486  NM_001163380     RAB2B
2   chr14   21843232       21990486  NM_001170629      CHD8
3   chr14   21843232       21990486  NM_001303523      TOX4
4   chr14   21843232       21990486     NM_007192   SUPT16H
5   chr14   21843232       21990486     NM_019852    METTL3
8   chr14   21843232       21990486     NR_002916    SNORD8
9   chr14   21843232       21990486     NR_003029    SNORD9
10  chr14   21843232       21990486     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   52776137       52879323  NM_001142495         MYO5A
1   chr15   52776137       52879323  NM_001286495       FAM214A
2   chr15   52776137       52879323  NM_001306191        ARPP19
7   chr16    8597853       11071301     NM_000303          PMM2
8   chr16    8597853       11071301     NM_000663          ABAT
9   chr16    8597853       11071301     NM_000833        GRIN2A
10  chr16    8597853       11071301  NM_001042476       CARHSP1
11  chr16    8597853       11071301  NM_001079512        TVP23A
15  chr16    8597853       11071301  NM_001146336       TMEM114
16  chr16    8597853       11071301  NM_001243403       CLEC16A
17  chr16    8597853       11071301  NM_001256160       ATF7IP2
22  chr16    8597853       11071301  NM_001286402         CIITA
23  chr16    8597853       11071301  NM_001286457          USP7
26  chr16    8597853       11071301  NM_001323594         NUBP1
30  chr16    8597853       11071301     NM_001424          EMP2
33  chr16    8597853       11071301     NM_014015          DEXI
34  chr16    8597853       11071301     NM_014117      C16orf72
37  chr16    8597853       11071301     NM_015421       TMEM186
39  chr16    8597853       11071301     NM_024109       METTL22
40  chr16    8597853       11071301     NM_144674         TEKT5
43  chr16    8597853       11071301     NR_126349     LINC01195
44  chr16    8597853       11071301     NR_126397     LINC01177
46  chr16    8597853       11071301     NR_135195  LOC101927009
48  chr18   35071150       35174336     NM_020180         CELF4
49  chr20   14812786       14943094     NM_080676       MACROD2
50  chr20   14812786       14943094     NR_037841   MACROD2-AS1
52   chr3  162842103      162954851     NR_033945     LINC01192
53   chr6  145863153      146191095     NM_005670         EPM2A
54   chr6  145863153      146191095     NM_032145        FBXO30
55   chr6  145863153      146191095     NR_038245  LOC100507557,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63335420       65879695     NR_002171      OR7E156P
1   chr13   63335420       65879695     NR_047011     LINC00395
2   chr13   63335420       65879695     NR_047029     LINC00448
5   chr13   63335420       65879695     NR_126409     LINC00376
6   chr13   63335420       65879695     NR_130763  LOC102723968
7   chr14   42193783       42322100  NM_001346175         LRFN5
8   chr16   16388307       16524335  NM_001004067         NOMO3
9   chr16   16388307       16524335  NM_001282511        NPIPA8
10  chr16   16388307       16524335     NR_036140     MIR3179-1
11  chr16   16388307       16524335     NR_036141     MIR3180-1
12  chr16   16388307       16524335     NR_036142     MIR3180-2
13  chr16   16388307       16524335     NR_036447        PKD1P1
14  chr16   16388307       16524335     NR_103772  LOC100288162
15  chr16   16388307       16524335     NR_106766     MIR6511A1
16  chr16   16388307       16524335     NR_106971     MIR6511A4
17  chr16   16388307       16524335     NR_107060     MIR6770-2
18  chr16   16388307       16524335     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143074375      143248620     NR_110761  LOC102723769
1   chr11    4239823        4438073  NM_001005161        OR52B4
2   chr11    4239823        4438073     NM_003141        TRIM21
3   chr14   21857449       22038910  NM_001005465        OR10G3
4   chr14   21857449       22038910  NM_001163380         RAB2B
5   chr14   21857449       22038910  NM_001170629          CHD8
6   chr14   21857449       22038910  NM_001303523          TOX4
7   chr14   21857449       22038910     NM_019852        METTL3
10  chr14   21857449       22038910     NR_002916        SNORD8
11  chr14   21857449       22038910     NR_003029        SNORD9
12  chr14   21857449       22038910     NR_111966         SALL2
14   chr2  129508549      129659270     NR_110278  LOC101927881
15   chr6   91010050       91123962     NR_039671       MIR4464
16   chr6  129227914      129458149  NM_001079823         LAMA2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16365904       16617457  NM_001004067         NOMO3
1   chr16   16365904       16617457  NM_001282511        NPIPA8
2   chr16   16365904       16617457     NR_036140     MIR3179-1
3   chr16   16365904       16617457     NR_036141     MIR3180-1
4   chr16   16365904       16617457     NR_036142     MIR3180-2
5   chr16   16365904       16617457     NR_036447        PKD1P1
6   chr16   16365904       16617457     NR_103772  LOC100288162
7   chr16   16365904       16617457     NR_106766     MIR6511A1
8   chr16   16365904       16617457     NR_106971     MIR6511A4
9   chr16   16365904       16617457     NR_107060     MIR6770-2
10  chr16   16365904       16617457     NR_128713     MIR3670-4
11  chr21   22313183       24997639     NM_004540         NCAM2
12  chr21   22313183       24997639     NR_038400     LINC00308
13  chr21   22313183       24997639     NR_038872     LINC00317
14  chr21   22313183       24997639     NR_040254     D21S2088E
15  chr21   22313183       24997639     NR_106746       MIR6130
16  chr21   22313183       24997639     NR_109958     LINC01425
17  chr21   22313183       24997639     NR_109959  LOC101927843
18   chr8  100592575      100695898     NM_017890        VPS13B,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   81474160       81759427     NM_003019        SFTPD
1   chr10   81474160       81759427     NR_002724        MBL1P
2   chr10   81474160       81759427     NR_029407    LOC642361
3   chr10   81474160       81759427     NR_033857      BMS1P21
4   chr10   81474160       81759427     NR_120611   NUTM2B-AS1
7   chr11   95810318       95946827     NM_032427        MAML2
8   chr14   80095455       81253896     NM_000793         DIO2
10  chr14   80095455       81253896  NM_001272020        NRXN3
13  chr14   80095455       81253896     NM_152446       CEP128
14  chr14   80095455       81253896     NR_038355     DIO2-AS1
16  chr15   98275266       98376969     NR_024172    LINC00923
17   chr2   26607329       26764600     NM_004802         OTOF
18   chr2   26607329       26764600     NM_033505      SELENOI
19   chr2   26607329       26764600     NM_145038         DRC1
21  chr22   18969698       19945064     NM_000407        GP1BB
22  chr22   18969698       19945064     NM_000754         COMT
23  chr22   18969698       19945064  NM_001009939        SEPT5
24  chr22   18969698       19945064  NM_001035247        UFD1L
27  chr22   18969698       19945064  NM_001166242     C22orf39
28  chr22   18969698       19945064  NM_001178010        CDC45
29  chr22   18969698       19945064  NM_001184781        DGCR2
30  chr22   18969698       19945064  NM_001256534      SLC25A1
31  chr22   18969698       19945064  NM_001282512       TXNRD2
32  chr22   18969698       19945064  NM_001318151       MRPL40
34  chr22   18969698       19945064     NM_001835       CLTCL1
36  chr22   18969698       19945064     NM_003277        CLDN5
37  chr22   18969698       19945064     NM_003325         HIRA
39  chr22   18969698       19945064     NM_005315         GSC2
41  chr22   18969698       19945064     NM_005992         TBX1
43  chr22   18969698       19945064     NM_022719       DGCR14
44  chr22   18969698       19945064     NM_024627     C22orf29
45  chr22   18969698       19945064     NM_053004        GNB1L
46  chr22   18969698       19945064     NM_053006        TSSK2
50  chr22   18969698       19945064     NR_002733        DGCR5
51  chr22   18969698       19945064     NR_024157       DGCR11
52  chr22   18969698       19945064     NR_024159        DGCR9
53  chr22   18969698       19945064     NR_024381    LINC00895
54  chr22   18969698       19945064     NR_026651       DGCR10
55  chr22   18969698       19945064     NR_037611  SEPT5-GP1BB
57  chr22   18969698       19945064     NR_103767    LINC01311
59   chr4    8606119        8837011  NM_001014447          CPZ
60   chr4   93222645       93336368     NM_001510        GRID2
61   chr5   17704502       17887691     NR_134286    LOC646241,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241687131      241832726     NM_001821          CHML
1    chr1  241687131      241832726     NM_003679           KMO
2    chr1  241687131      241832726     NM_014322          OPN3
3    chr1  241687131      241832726     NM_144625         WDR64
4   chr14   21840642       22184693  NM_001001912         OR4E2
5   chr14   21840642       22184693  NM_001005465        OR10G3
6   chr14   21840642       22184693  NM_001005466        OR10G2
7   chr14   21840642       22184693  NM_001163380         RAB2B
8   chr14   21840642       22184693  NM_001170629          CHD8
9   chr14   21840642       22184693  NM_001303523          TOX4
10  chr14   21840642       22184693  NM_001317107         OR4E1
11  chr14   21840642       22184693     NM_007192       SUPT16H
12  chr14   21840642       22184693     NM_019852        METTL3
15  chr14   21840642       22184693     NR_002916        SNORD8
16  chr14   21840642       22184693     NR_003029        SNORD9
17  chr14   21840642       22184693     NR_111966         SALL2
19   chr2   51649455       54311660  NM_001164165    GPR75-ASB3
20   chr2   51649455       54311660  NM_001201965          ASB3
21   chr2   51649455       54311660  NM_001320587         ACYP2
22   chr2   51649455       54311660  NM_001346127         CHAC2
23   chr2   51649455       54311660     NM_006794         GPR75
24   chr2   51649455       54311660     NM_014614         PSME4
25   chr2   51649455       54311660     NM_015701        ERLEC1
27   chr2   51649455       54311660     NR_037453       MIR3682
28   chr2   51649455       54311660     NR_039630       MIR4431
29   chr2   51649455       54311660     NR_135237     LOC730100
30   chr2   51649455       54311660     NR_135239  LOC105374596
31  chr20   14773403       14879462     NM_080676       MACROD2
32  chr20   14773403       14879462     NR_037841   MACROD2-AS1
33   chr6  162407128      162520580     NM_013988         PARK2
34   chr7   88941566       89170299     NM_181646       ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   79002271       79324546     NM_000959         PTGFR
1    chr1   79002271       79324546     NM_006417         IFI44
2    chr1   79002271       79324546     NM_006820        IFI44L
4   chr12   19555150       19696452  NM_001267043         AEBP2
6   chr15   28702489       29074963  NM_001282468       GOLGA8M
7   chr15   28702489       29074963     NR_026589       WHAMMP2
8   chr15   28702489       29074963     NR_033351       GOLGA8F
9   chr15   28702489       29074963     NR_033353       GOLGA8G
10  chr15   28702489       29074963     NR_036443       HERC2P9
11  chr15   28702489       29074963     NR_036475  LOC100289656
12  chr15   28702489       29074963     NR_037599     PDCD6IPP2
13  chr15   28702489       29074963     NR_039734     MIR4509-3
14  chr15   36161093       36352708     NR_039735       MIR4510
15  chr15   77619444       77994674  NM_001301186        LINGO1
24  chr15   77619444       77994674  NM_001304505        HMG20A
25  chr15   77619444       77994674     NM_024776         PEAK1
27  chr15   77619444       77994674     NR_045123    LINGO1-AS1
28  chr15   77619444       77994674     NR_120361    LINGO1-AS2
29  chr15   77619444       77994674     NR_135692  LOC101929457
30   chr5  175442484      175545409  NM_001265615       FAM153B
31   chr5  175442484      175545409     NR_103794  LOC100996385
32   chr6  116578287      116722960  NM_001322939           DSE
35   chr6  116578287      116722960     NM_003309        TSPYL1,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143497546      144796068  NM_001123068       PPIAL4G
1   chr1  143497546      144796068  NM_001135789       PPIAL4C
2   chr1  143497546      144796068  NM_001277444         NBPF9
3   chr1  143497546      144796068  NM_001278267        NBPF20
4   chr1  143497546      144796068  NM_001287385        FAM72C
5   chr1  143497546      144796068  NM_001345942        FAM72D
9   chr1  143497546      144796068     NR_003242        PFN1P2
10  chr1  143497546      144796068     NR_024511     LINC00623
12  chr1  143497546      144796068     NR_102405         NBPF8
13  chr1  143497546      144796068     NR_104014     LINC01138
14  chr1  143497546      144796068     NR_106967       MIR6077
15  chr1  143497546      144796068     NR_111930  LOC100132057
16  chr1  143497546      144796068     NR_111953     LINC00869
18  chr2   97212350       97556800  NM_001115016        KANSL3
19  chr2   97212350       97556800  NM_001122646       FAM178B
21  chr2   97212350       97556800  NM_001293083        FER1L5
22  chr2   97212350       97556800  NM_001319085        ARID5A
24  chr2   97212350       97556800  NM_001322354        LMAN2L
25  chr2   97212350       97556800     NM_016466       ANKRD39
27  chr2   97212350       97556800     NM_017623         CNNM3
28  chr2   97212350       97556800     NM_017789        SEMA4C
29  chr2   97212350       97556800     NM_020184         CNNM4
31  chr2   97212350       97556800     NM_144994       ANKRD23
32  chr2   97212350       97556800     NR_036074       MIR3127
34  chr4     151449         316812  NM_001039127        ZNF718
35  chr4     151449         316812  NM_001137608        ZNF732
38  chr4     151449         316812     NR_027481       ZNF876P
41  chr7   24341329       24823499  NM_001127453         DFNA5
43  chr7   24341329       24823499     NM_016447          MPP6
44  chr9   28490351       28693738  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  102360027      102533196     NR_033424   DNAJA1P5
1    chr1  102360027      102533196     NR_110211      OLFM3
2   chr11    6748082        6910453  NM_001004460     OR10A2
3   chr11    6748082        6910453  NM_001004489     OR2AG1
4   chr11    6748082        6910453  NM_001004490     OR2AG2
5   chr11    6748082        6910453     NM_003696      OR6A2
6   chr11    6748082        6910453     NM_178168     OR10A5
7   chr11    6748082        6910453     NM_207186     OR10A4
8   chr14   21823251       21992764  NM_001163380      RAB2B
9   chr14   21823251       21992764  NM_001170629       CHD8
10  chr14   21823251       21992764  NM_001303523       TOX4
11  chr14   21823251       21992764     NM_007192    SUPT16H
12  chr14   21823251       21992764     NM_019852     METTL3
15  chr14   21823251       21992764     NR_002916     SNORD8
16  chr14   21823251       21992764     NR_003029     SNORD9
17  chr14   21823251       21992764     NR_111966      SALL2
19  chr15   28526532       28681228     NM_004667      HERC2
20  chr15   28526532       28681228     NR_033351    GOLGA8F
21  chr15   28526532       28681228     NR_033353    GOLGA8G
22  chr15   28526532       28681228     NR_039734  MIR4509-3
23   chr4  169221675      169430760  NM_001012967     DDX60L
24   chr4  169221675      169430760  NM_001166108      PALLD
26   chr4  169221675      169430760     NM_017631      DDX60
27   chr7    3752983        3938907     NM_152744       SDK1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   19165298       19762705  NM_001142308       MALRD1
1   chr14   21823395       22003418  NM_001163380        RAB2B
2   chr14   21823395       22003418  NM_001170629         CHD8
3   chr14   21823395       22003418  NM_001303523         TOX4
4   chr14   21823395       22003418     NM_007192      SUPT16H
5   chr14   21823395       22003418     NM_019852       METTL3
8   chr14   21823395       22003418     NR_002916       SNORD8
9   chr14   21823395       22003418     NR_003029       SNORD9
10  chr14   21823395       22003418     NR_111966        SALL2
12  chr15   77884243       78095164  NM_001301186       LINGO1
22  chr15   77884243       78095164     NR_045123   LINGO1-AS1
23  chr15   77884243       78095164     NR_120361   LINGO1-AS2
24  chr20   14665878       14809003     NM_080676      MACROD2
25  chr20   14863749       14976033     NM_080676      MACROD2
26  chr20   14863749       14976033     NR_037841  MACROD2-AS1
28   chr6  116557437      116702096  NM_001322939          DSE
31   chr6  116557437      116702096     NM_003309       TSPYL1
32   chr6  116557437      116702096     NM_021648       TSPYL4
33   chr6  116557437      116702096     NM_152729       NT5DC1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21835036       21958297  NM_001163380         RAB2B
1   chr14   21835036       21958297  NM_001170629          CHD8
2   chr14   21835036       21958297  NM_001303523          TOX4
3   chr14   21835036       21958297     NM_007192       SUPT16H
6   chr14   21835036       21958297     NR_002916        SNORD8
7   chr14   21835036       21958297     NR_003029        SNORD9
8   chr16   68571411       68763314  NM_001305204         ZFP90
10  chr16   68571411       68763314  NM_001317195          CDH3
11   chr2  242435930      242576751  NM_001164356         THAP4
12   chr2  242435930      242576751  NM_001271978         STK25
16   chr2  242435930      242576751     NM_032515           BOK
17   chr2  242435930      242576751     NR_033346       BOK-AS1
18  chr21   40079793       40252200  NM_001256295          ETS2
20  chr21   40079793       40252200     NR_027065     LINC00114
23  chr21   40079793       40252200     NR_109926  LOC101928398
24  chr21   40079793       40252200     NR_120405     LOC400867
25   chr7   64069722       64170989  NM_001282360        ZNF107
26   chr7   64069722       64170989     NR_077227  LOC100128885
28   chr7   64069722       64170989     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12854323       12979333  NM_001009611       PRAMEF4
1    chr1   12854323       12979333  NM_001012276       PRAMEF8
2    chr1   12854323       12979333  NM_001013631      HNRNPCL1
3    chr1   12854323       12979333  NM_001146181      HNRNPCL3
4    chr1   12854323       12979333  NM_001146344      PRAMEF11
5    chr1   12854323       12979333  NM_001294139       PRAMEF1
6    chr1   12854323       12979333  NM_001302551      HNRNPCL4
8    chr1   12854323       12979333     NM_023014       PRAMEF2
9    chr1   14865678       15548449  NM_001017999          KAZN
12   chr1   14865678       15548449  NM_001136216        TMEM51
14   chr1   14865678       15548449  NM_001278501      C1orf195
18   chr1   14865678       15548449     NR_027136    TMEM51-AS1
20  chr12   10584526       10758139  NM_001300739        MAGOHB
21  chr12   10584526       10758139  NM_001304448         KLRC1
23  chr12   10584526       10758139     NM_002260         KLRC2
26  chr12   10584526       10758139     NR_028045        KLRA1P
27  chr12   17790215       17949624     NR_039770       MIR3974
28  chr14   61912418       62053531     NM_006255         PRKCH
29  chr14   61912418       62053531     NR_039985      FLJ22447
30  chr14   61912418       62053531     NR_110416  LOC101927780
32  chr15   28611268       29959581  NM_001130414         APBA2
33  chr15   28611268       29959581  NM_001282468       GOLGA8M
34  chr15   28611268       29959581     NM_015307      FAM189A1
35  chr15   28611268       29959581     NM_138704        NSMCE3
36  chr15   28611268       29959581     NR_026589       WHAMMP2
37  chr15   28611268       29959581     NR_033351       GOLGA8F
39  chr15   28611268       29959581     NR_033353       GOLGA8G
41  chr15   28611268       29959581     NR_036443       HERC2P9
42  chr15   28611268       29959581     NR_036475  LOC100289656
43  chr15   28611268       29959581     NR_037599     PDCD6IPP2
44  chr15   28611268       29959581     NR_039734     MIR4509-3
46  chr15   28611268       29959581     NR_047567     GOLGA6L7P
47  chr15   78378041       78750515  NM_001101404         SH2D7
48  chr15   78378041       78750515  NM_001130182        DNAJA4
50  chr15   78378041       78750515  NM_001199377        ACSBG1
51  chr15   78378041       78750515  NM_001301224          CIB2
52  chr15   78378041       78750515  NM_001303247         WDR61
53  chr15   78378041       78750515  NM_001320941         IREB2
56  chr15   78378041       78750515     NM_004378        CRABP1
57  chr15   78378041       78750515     NM_005530         IDH3A
59  chr15   87284145       87445167     NM_152336         AGBL1
60   chr2   97146998       97319738  NM_001115016        KANSL3
61   chr2   97146998       97319738  NM_001285485        NEURL3
62   chr2   97146998       97319738  NM_001293083        FER1L5
63   chr2   97146998       97319738  NM_001319085        ARID5A
67   chr2   97146998       97319738     NR_135564  LOC105373496
68   chr7   21379917       21835922  NM_001277115        DNAH11
69   chr7   21379917       21835922  NM_001326542           SP4
70   chr7   21379917       21835922     NR_031594       MIR1183,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21724963       22037650  NM_001163380     RAB2B
1   chr14   21724963       22037650  NM_001170629      CHD8
2   chr14   21724963       22037650  NM_001303523      TOX4
3   chr14   21724963       22037650     NM_007192   SUPT16H
4   chr14   21724963       22037650     NM_019852    METTL3
5   chr14   21724963       22037650     NM_020366   RPGRIP1
7   chr14   21724963       22037650     NM_031314    HNRNPC
9   chr14   21724963       22037650     NR_002916    SNORD8
10  chr14   21724963       22037650     NR_003029    SNORD9
11  chr14   21724963       22037650     NR_111966     SALL2
13  chr15   24400772       24740418     NR_026647     PWRN2
14  chr15   24400772       24740418     NR_130780     PWRN3
15  chr17      38750         174778  NM_001190411    RPH3AL
16   chr5  119879784      120295773  NM_001300783     PRR16
19   chr7  110561458      110664039  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   21788083       21896349  NM_001170629       CHD8
1  chr14   21788083       21896349     NM_007192    SUPT16H
2  chr14   21788083       21896349     NM_020366    RPGRIP1
4  chr14   21788083       21896349     NR_002916     SNORD8
5  chr14   21788083       21896349     NR_003029     SNORD9
6  chr15   21106209       21311284     NR_028506      NF1P2
7  chr15   21106209       21311284     NR_040094  LINC01193
8  chr15   21106209       21311284     NR_049895  MIR5701-2
9   chr7  110796680      110954644  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   21514363       21919158  NM_001077180        METTL9
1   chr16   21514363       21919158  NM_001161683          OTOA
3   chr16   21514363       21919158  NM_001310148        NPIPB4
4   chr16   21514363       21919158     NM_005849         IGSF6
7   chr16   21514363       21919158     NR_002594      SLC7A5P2
8   chr16   21514363       21919158     NR_003370        RRN3P1
9   chr16   21514363       21919158     NR_049833     MIR3680-2
10  chr16   21514363       21919158     NR_110930  LOC101927814
11   chr7    4095853        4428205  NM_001079653          SDK1
13   chr9   28598874       28710390  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr13   93073184       93271538     NM_004466         GPC5
1   chr13   93073184       93271538     NR_049840     MIR548AS
2   chr13  113109373      113463950  NM_001286278      TUBGCP3
5   chr13  113109373      113463950     NM_015205       ATP11A
6   chr13  113109373      113463950     NM_207440     ATP11AUN
7   chr13  113109373      113463950     NR_046661   ATP11A-AS1
9   chr14   21654161       21833509     NM_007192      SUPT16H
10  chr14   21654161       21833509     NM_020366      RPGRIP1
11  chr14   21654161       21833509     NM_031314       HNRNPC
12  chr14   21654161       21833509     NR_038970    LINC00641
14  chr20   14800614       15041632     NM_080676      MACROD2
15  chr20   14800614       15041632     NR_037841  MACROD2-AS1
17  chr22   32387279       32658758     NM_000343       SLC5A1
18  chr22   32387279       32658758  NM_001010859     C22orf42
19  chr22   32387279       32658758  NM_001098527        RFPL2
24  chr22   32387279       32658758     NM_014227       SLC5A4
25  chr22   32387279       32658758     NR_040114      AP1B1P1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21788947       21935835  NM_001163380     RAB2B
1  chr14   21788947       21935835  NM_001170629      CHD8
2  chr14   21788947       21935835     NM_007192   SUPT16H
3  chr14   21788947       21935835     NM_020366   RPGRIP1
6  chr14   21788947       21935835     NR_002916    SNORD8
7  chr14   21788947       21935835     NR_003029    SNORD9
8   chr4   71350841       71478928  NM_001286731      AMTN
9   chr4   71350841       71478928     NM_016519      AMBN,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18307505       18567834  NM_001004060         NOMO2
1   chr16   18307505       18567834  NM_001282511        NPIPA8
2   chr16   18307505       18567834     NR_036140     MIR3179-1
3   chr16   18307505       18567834     NR_036142     MIR3180-2
4   chr16   18307505       18567834     NR_036144     MIR3180-3
5   chr16   18307505       18567834     NR_037442     MIR3670-1
6   chr16   18307505       18567834     NR_103772  LOC100288162
7   chr16   18307505       18567834     NR_106971     MIR6511A4
8   chr16   18307505       18567834     NR_107060     MIR6770-2
9   chr22   17179189       17297438     NM_175878          XKR3
10  chr22   17179189       17297438     NR_134584  LOC101929350
11   chr7  110513629      110641520  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr22   18989709       19310562  NM_001184781      DGCR2
1   chr22   18989709       19310562  NM_001256534    SLC25A1
2   chr22   18989709       19310562     NM_001835     CLTCL1
3   chr22   18989709       19310562     NM_005315       GSC2
5   chr22   18989709       19310562     NM_022719     DGCR14
6   chr22   18989709       19310562     NM_053006      TSSK2
7   chr22   18989709       19310562     NR_024157     DGCR11
8   chr22   18989709       19310562     NR_024159      DGCR9
9   chr22   18989709       19310562     NR_026651     DGCR10
10  chr22   18989709       19310562     NR_103767  LINC01311
11  chr22   18989709       19310562     NR_110533      DGCR5
12   chr4   69235701       69344559     NM_014058  TMPRSS11E
13   chr7  145905754      146317496     NM_014141    CNTNAP2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21921794       22617249  NM_001001912      OR4E2
1   chr14   21921794       22617249  NM_001005465     OR10G3
2   chr14   21921794       22617249  NM_001005466     OR10G2
3   chr14   21921794       22617249  NM_001163380      RAB2B
4   chr14   21921794       22617249  NM_001303523       TOX4
5   chr14   21921794       22617249  NM_001317107      OR4E1
6   chr14   21921794       22617249     NM_019852     METTL3
8   chr14   21921794       22617249     NR_111966      SALL2
10   chr2   51737334       51842674     NR_135237  LOC730100,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21937317       22353306  NM_001001912      OR4E2
1   chr14   21937317       22353306  NM_001005465     OR10G3
2   chr14   21937317       22353306  NM_001005466     OR10G2
3   chr14   21937317       22353306  NM_001163380      RAB2B
4   chr14   21937317       22353306  NM_001303523       TOX4
5   chr14   21937317       22353306  NM_001317107      OR4E1
6   chr14   21937317       22353306     NM_019852     METTL3
8   chr14   21937317       22353306     NR_111966      SALL2
10  chr15   28122835       28289194     NM_000275       OCA2
12   chr2  185154377      185300742     NR_039638  MIR548AE1
13   chr5   93418680       93551282  NM_001145678   KIAA0825
14   chr5   93418680       93551282  NM_001163418    FAM172A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143601403      144142448  NM_001123068       PPIAL4G
1    chr1  143601403      144142448  NM_001287385        FAM72C
2    chr1  143601403      144142448  NM_001345942        FAM72D
6    chr1  143601403      144142448     NR_104014     LINC01138
7    chr1  143601403      144142448     NR_106967       MIR6077
8    chr1  143601403      144142448     NR_111930  LOC100132057
10  chr12  130278970      130555164     NM_133448      TMEM132D
11  chr12  130278970      130555164     NR_024457  LOC100190940
12  chr15   28157841       28331488     NM_000275          OCA2
14  chr16   21506139       21898445  NM_001077180        METTL9
15  chr16   21506139       21898445  NM_001161683          OTOA
17  chr16   21506139       21898445  NM_001310148        NPIPB4
18  chr16   21506139       21898445     NM_005849         IGSF6
21  chr16   21506139       21898445     NR_002594      SLC7A5P2
22  chr16   21506139       21898445     NR_003370        RRN3P1
23  chr16   21506139       21898445     NR_027155        SMG1P3
24  chr16   21506139       21898445     NR_049833     MIR3680-2
25  chr16   21506139       21898445     NR_110930  LOC101927814
26   chr2   84705386       84965853     NM_001370         DNAH6
27   chr6  162865012      163131953     NM_013988         PARK2,    chrom  cnv_start  cnv_terminate    tx_name    gene_name
0  chr20   14614767       14998163  NM_080676      MACROD2
1  chr20   14614767       14998163  NR_037841  MACROD2-AS1
3   chr5   23863513       24057752  NR_131245      C5orf17,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143695569      143822511  NM_001123068       PPIAL4G
1    chr1  143695569      143822511     NR_104014     LINC01138
2    chr1  143695569      143822511     NR_111930  LOC100132057
3   chr16   18288116       18881560  NM_001004060         NOMO2
4   chr16   18288116       18881560     NM_001019        RPS15A
5   chr16   18288116       18881560  NM_001282511        NPIPA8
6   chr16   18288116       18881560  NM_001313858       ARL6IP1
7   chr16   18288116       18881560     NM_015092          SMG1
9   chr16   18288116       18881560     NR_003569       ABCC6P1
10  chr16   18288116       18881560     NR_036140     MIR3179-1
11  chr16   18288116       18881560     NR_036142     MIR3180-2
12  chr16   18288116       18881560     NR_036144     MIR3180-3
13  chr16   18288116       18881560     NR_037442     MIR3670-1
14  chr16   18288116       18881560     NR_103772  LOC100288162
15  chr16   18288116       18881560     NR_106971     MIR6511A4
16  chr16   18288116       18881560     NR_107060     MIR6770-2
17  chr21   22703027       23137311     NM_004540         NCAM2
18  chr21   22703027       23137311     NR_038872     LINC00317
19  chr21   22703027       23137311     NR_109958     LINC01425
20   chr3    4113322        4618520  NM_001164675         SUMF1
21   chr3    4113322        4618520  NM_001168272         ITPR1
22   chr3    4113322        4618520  NM_001243723        SETMAR
24   chr3    4113322        4618520     NR_108075     ITPR1-AS1
25   chr7    5599916        5809756     NM_003088         FSCN1
26   chr7    5599916        5809756     NM_207116        RNF216
27   chr7    5599916        5809756     NR_046834    RNF216-IT1
28   chr7    5599916        5809756     NR_106934       MIR6874
29   chr8  103916952      104074093     NM_001695      ATP6V1C1
30   chr8  103916952      104074093     NR_126339     AZIN1-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21824496       22037607  NM_001163380     RAB2B
1   chr14   21824496       22037607  NM_001170629      CHD8
2   chr14   21824496       22037607  NM_001303523      TOX4
3   chr14   21824496       22037607     NM_007192   SUPT16H
4   chr14   21824496       22037607     NM_019852    METTL3
7   chr14   21824496       22037607     NR_002916    SNORD8
8   chr14   21824496       22037607     NR_003029    SNORD9
9   chr14   21824496       22037607     NR_111966     SALL2
11  chr14   47831759       48002115  NM_001113498     MDGA2
12  chr15   52961084       53145434     NM_004498   ONECUT1
13  chr15   52961084       53145434     NM_019600   FAM214A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108453999      108564027     NM_006113          VAV3
1    chr1  108453999      108564027     NR_046653      VAV3-AS1
2   chr12   27231590       27333382  NM_001080406      C12orf71
3   chr14   21916739       22022443  NM_001163380         RAB2B
4   chr14   21916739       22022443  NM_001303523          TOX4
5   chr14   21916739       22022443     NM_019852        METTL3
7   chr14   21916739       22022443     NR_111966         SALL2
9   chr14   47893971       48033749  NM_001113498         MDGA2
10  chr16   22201984       22373594  NM_001258033        POLR3E
11  chr16   22201984       22373594     NM_001802          CDR2
12  chr16   22201984       22373594     NM_013302         EEF2K
13   chr2  202193453      202923649  NM_001044385       TMEM237
14   chr2  202193453      202923649  NM_001135745          ALS2
15   chr2  202193453      202923649  NM_001168216      ALS2CR11
17   chr2  202193453      202923649  NM_001206864        STRADB
18   chr2  202193453      202923649  NM_001261435         CDK15
20   chr2  202193453      202923649     NM_003507          FZD7
21   chr2  202193453      202923649     NM_015049         TRAK2
23   chr2  202193453      202923649     NM_033066          MPP4
26   chr2  202193453      202923649     NR_110620      ALS2CR12
27   chr9   41926507       42052276     NR_003670        FGF7P3
28   chr9   41926507       42052276     NR_015363         GLIDR
31   chr9   41926507       42052276     NR_126048  LOC102724238
32   chr9   41926507       42052276     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12     661245         808152  NM_001294345         NINJ2
3   chr12     661245         808152     NM_173593      B4GALNT3
4   chr12     661245         808152     NR_122124  LOC100049716
5   chr12     661245         808152     NR_134624  LOC105369595
6   chr14   21808447       23233713  NM_001001912         OR4E2
7   chr14   21808447       23233713  NM_001005465        OR10G3
8   chr14   21808447       23233713  NM_001005466        OR10G2
9   chr14   21808447       23233713  NM_001163380         RAB2B
10  chr14   21808447       23233713  NM_001170629          CHD8
11  chr14   21808447       23233713  NM_001303523          TOX4
12  chr14   21808447       23233713  NM_001317107         OR4E1
13  chr14   21808447       23233713     NM_001344          DAD1
14  chr14   21808447       23233713     NM_007192       SUPT16H
15  chr14   21808447       23233713     NM_019852        METTL3
16  chr14   21808447       23233713     NM_020366       RPGRIP1
18  chr14   21808447       23233713     NM_022060         ABHD4
20  chr14   21808447       23233713     NR_002916        SNORD8
21  chr14   21808447       23233713     NR_003029        SNORD9
22  chr14   21808447       23233713     NR_111966         SALL2
24   chr9   28468666       28629715  NM_001258282        LINGO2,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21892788       22069652  NM_001005465    OR10G3
1  chr14   21892788       22069652  NM_001163380     RAB2B
2  chr14   21892788       22069652  NM_001170629      CHD8
3  chr14   21892788       22069652  NM_001303523      TOX4
4  chr14   21892788       22069652     NM_019852    METTL3
7  chr14   21892788       22069652     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   87386874       87588739  NM_001134492     HS2ST1
2   chr14   21837641       23393882  NM_001001912      OR4E2
3   chr14   21837641       23393882  NM_001005465     OR10G3
4   chr14   21837641       23393882  NM_001005466     OR10G2
5   chr14   21837641       23393882  NM_001039619      PRMT5
6   chr14   21837641       23393882  NM_001126105     SLC7A7
8   chr14   21837641       23393882  NM_001163380      RAB2B
9   chr14   21837641       23393882  NM_001170629       CHD8
10  chr14   21837641       23393882  NM_001303523       TOX4
11  chr14   21837641       23393882  NM_001317107      OR4E1
12  chr14   21837641       23393882  NM_001318870     MRPL52
13  chr14   21837641       23393882  NM_001329226      LRP10
14  chr14   21837641       23393882     NM_001344       DAD1
15  chr14   21837641       23393882     NM_004995      MMP14
16  chr14   21837641       23393882     NM_005015      OXA1L
17  chr14   21837641       23393882     NM_007192    SUPT16H
18  chr14   21837641       23393882     NM_018107      RBM23
19  chr14   21837641       23393882     NM_019852     METTL3
21  chr14   21837641       23393882     NM_022060      ABHD4
23  chr14   21837641       23393882     NM_173527       REM2
24  chr14   21837641       23393882     NR_002916     SNORD8
25  chr14   21837641       23393882     NR_003029     SNORD9
27  chr14   21837641       23393882     NR_111966      SALL2
29  chr14   21837641       23393882     NR_120599  PRMT5-AS1
30   chr9   28584491       28789497  NM_001258282     LINGO2,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr22   17240826       17420102     NM_175878       XKR3
1  chr22   17240826       17420102     NR_003607    HSFY1P1
2   chr4   69144761       69253752  NM_001031732     YTHDC1
3   chr6  162709830      162838619     NM_013988      PARK2
4   chr9   31322242       31444037     NR_135134  LINC01243
5   chr9   39056235       39377088  NM_001085452  SPATA31A1
6   chr9   39056235       39377088     NM_033655    CNTNAP3
7   chr9   39056235       39377088     NR_026803    FAM74A1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr22   19025429       19199494  NM_001184781      DGCR2
1  chr22   19025429       19199494  NM_001256534    SLC25A1
2  chr22   19025429       19199494     NM_001835     CLTCL1
3  chr22   19025429       19199494     NM_005315       GSC2
5  chr22   19025429       19199494     NM_022719     DGCR14
6  chr22   19025429       19199494     NM_053006      TSSK2
7  chr22   19025429       19199494     NR_024157     DGCR11
8  chr22   19025429       19199494     NR_103767  LINC01311
9   chr9    9931785       10056171     NM_002839      PTPRD,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21838953       22183407  NM_001001912     OR4E2
1   chr14   21838953       22183407  NM_001005465    OR10G3
2   chr14   21838953       22183407  NM_001005466    OR10G2
3   chr14   21838953       22183407  NM_001163380     RAB2B
4   chr14   21838953       22183407  NM_001170629      CHD8
5   chr14   21838953       22183407  NM_001303523      TOX4
6   chr14   21838953       22183407  NM_001317107     OR4E1
7   chr14   21838953       22183407     NM_007192   SUPT16H
8   chr14   21838953       22183407     NM_019852    METTL3
11  chr14   21838953       22183407     NR_002916    SNORD8
12  chr14   21838953       22183407     NR_003029    SNORD9
13  chr14   21838953       22183407     NR_111966     SALL2
15   chr7   64129566       64281668  NM_001160183    ZNF138
16   chr7   64129566       64281668  NM_001282360    ZNF107
19   chr7   64129566       64281668     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  134253881      134363113     NM_054025        B3GAT1
1   chr11  134253881      134363113     NR_033852     LOC283177
2   chr14   21887627       22037665  NM_001163380         RAB2B
3   chr14   21887627       22037665  NM_001170629          CHD8
4   chr14   21887627       22037665  NM_001303523          TOX4
5   chr14   21887627       22037665     NM_019852        METTL3
8   chr14   21887627       22037665     NR_111966         SALL2
10   chr2   78788668       79027365     NR_136312  LOC105374820
11   chr8  110216190      110347506  NM_001128211        NUDCD1
12   chr8  110216190      110347506  NM_001193557          ENY2
14   chr9   41465932       41607825  NM_001113541     SPATA31A5
15   chr9   41465932       41607825     NM_015667     SPATA31A7
16   chr9   41465932       41607825     NR_003528       ZNF658B
17   chr9   41465932       41607825     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr13   63127105       63415814     NR_047029      LINC00448
3   chr14   21792488       21904843  NM_001170629           CHD8
4   chr14   21792488       21904843     NM_007192        SUPT16H
5   chr14   21792488       21904843     NM_020366        RPGRIP1
7   chr14   21792488       21904843     NR_002916         SNORD8
8   chr14   21792488       21904843     NR_003029         SNORD9
9   chr16   14837541       14938913  NM_001277323         NPIPA3
10  chr16   14837541       14938913  NM_001277324         NPIPA2
11  chr16   14837541       14938913     NM_014287          NOMO1
12  chr16   14837541       14938913     NR_023387        ABCC6P2
13  chr19    1076025        1241893     NM_000455          STK11
14  chr19    1076025        1241893  NM_001001975          ATP5D
15  chr19    1076025        1241893  NM_001039848           GPX4
16  chr19    1076025        1241893  NM_001100122          SBNO2
17  chr19    1076025        1241893  NM_001258328       ARHGAP45
20  chr19    1076025        1241893  NM_001316323         POLR2E
25  chr19    1076025        1241893     NM_152769          CBARP
26  chr19    9368928        9627112  NM_001172650  ZNF559-ZNF177
27  chr19    9368928        9627112  NM_001172651         ZNF177
28  chr19    9368928        9627112  NM_001202406         ZNF559
31  chr19    9368928        9627112  NM_001271314         ZNF266
33  chr19    9368928        9627112     NM_152476         ZNF560
34  chr19    9368928        9627112     NM_198535         ZNF699
35   chr2  242419348      243282005  NM_001164356          THAP4
36   chr2  242419348      243282005  NM_001165031          DTYMK
37   chr2  242419348      243282005  NM_001167601           NEU4
39   chr2  242419348      243282005  NM_001271978          STK25
42   chr2  242419348      243282005  NM_001287249         D2HGDH
43   chr2  242419348      243282005  NM_001330161           ING5
45   chr2  242419348      243282005     NM_005018          PDCD1
46   chr2  242419348      243282005     NM_014808          FARP2
48   chr2  242419348      243282005     NM_022134        GAL3ST2
50   chr2  242419348      243282005     NM_032515            BOK
51   chr2  242419348      243282005     NM_173821           RTP5
52   chr2  242419348      243282005     NM_178326          ATG4B
53   chr2  242419348      243282005     NR_033346        BOK-AS1
54   chr2  242419348      243282005     NR_110220      LINC01237
55   chr2  242419348      243282005     NR_110592   LOC102723927
56   chr2  242419348      243282005     NR_130699      LOC728323
57   chr2  242419348      243282005     NR_135766      LOC285095
60   chr5  114069003      114538680  NM_001017397         TRIM36
64   chr5  114069003      114538680     NR_130785   LOC101927078,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21709815       21926552  NM_001170629         CHD8
1   chr14   21709815       21926552     NM_007192      SUPT16H
2   chr14   21709815       21926552     NM_020366      RPGRIP1
4   chr14   21709815       21926552     NM_031314       HNRNPC
5   chr14   21709815       21926552     NR_002916       SNORD8
6   chr14   21709815       21926552     NR_003029       SNORD9
7   chr15   60001561       60333407     NM_012182        FOXB1
8    chr2  133779196      133893434     NM_207363       NCKAP5
9   chr21   23169288       23313320     NR_109958    LINC01425
10   chr6  162887694      163162602  NM_001080378        PACRG
12   chr6  162887694      163162602     NM_013988        PARK2
13   chr9   11970382       13128823     NM_000550        TYRP1
14   chr9   11970382       13128823  NM_001261407         MPDZ
16   chr9   11970382       13128823     NM_203403      LURAP1L
17   chr9   11970382       13128823     NR_125775  LURAP1L-AS1
18   chr9   11970382       13128823     NR_132976     SNORD137
19   chr9   39040179       39351986     NM_033655      CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21837382       22068161  NM_001005465    OR10G3
1   chr14   21837382       22068161  NM_001163380     RAB2B
2   chr14   21837382       22068161  NM_001170629      CHD8
3   chr14   21837382       22068161  NM_001303523      TOX4
4   chr14   21837382       22068161     NM_007192   SUPT16H
5   chr14   21837382       22068161     NM_019852    METTL3
8   chr14   21837382       22068161     NR_002916    SNORD8
9   chr14   21837382       22068161     NR_003029    SNORD9
10  chr14   21837382       22068161     NR_111966     SALL2
12   chr7   64099455       64270668  NM_001160183    ZNF138
13   chr7   64099455       64270668  NM_001282360    ZNF107
16   chr7   64099455       64270668     NR_106898   MIR6839
17   chr9   15026703       16403100  NM_001039697    SNAPC3
18   chr9   15026703       16403100  NM_001128217     PSIP1
19   chr9   15026703       16403100  NM_001168339    TTC39B
21   chr9   15026703       16403100  NM_001271829   C9orf92
24   chr9   15026703       16403100     NM_173550   CCDC171,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   89069387       89370958  NM_001143837      NOX4
6   chr14   21915603       22042978  NM_001005465    OR10G3
7   chr14   21915603       22042978  NM_001163380     RAB2B
8   chr14   21915603       22042978  NM_001303523      TOX4
9   chr14   21915603       22042978     NM_019852    METTL3
11  chr14   21915603       22042978     NR_111966     SALL2
13  chr15   36186403       36398579     NR_039735   MIR4510
14   chr7  110680317      110897081  NM_001099658     LRRN3
15   chr7  110680317      110897081  NM_001244606    IMMP2L
17   chr7  110796582      110906245  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   16408057       16522135  NM_001282511        NPIPA8
1  chr16   16408057       16522135     NR_036447        PKD1P1
2  chr16   16408057       16522135     NR_103772  LOC100288162
3  chr16   16408057       16522135     NR_106766     MIR6511A1
4  chr16   16408057       16522135     NR_106971     MIR6511A4
5  chr16   16408057       16522135     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   26974846       27207347     NM_002515         NOVA1
2   chr22   17239227       17680657  NM_001037814          GAB4
3   chr22   17239227       17680657  NM_001163079         CECR6
4   chr22   17239227       17680657  NM_001282227         CECR1
6   chr22   17239227       17680657  NM_001289905        IL17RA
7   chr22   17239227       17680657     NM_017829         CECR5
10  chr22   17239227       17680657     NM_175878          XKR3
12  chr22   17239227       17680657     NR_003607       HSFY1P1
13  chr22   17239227       17680657     NR_015352         CECR7
14  chr22   17239227       17680657     NR_024482     CECR5-AS1
15  chr22   17239227       17680657     NR_103793  LOC100996342
16   chr9     201808         606026  NM_001190458         DOCK8
17   chr9     201808         606026  NM_001256876         KANK1
19   chr9     201808         606026     NM_152569       C9orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21921764       22039771  NM_001005465        OR10G3
1   chr14   21921764       22039771  NM_001163380         RAB2B
2   chr14   21921764       22039771  NM_001303523          TOX4
3   chr14   21921764       22039771     NM_019852        METTL3
5   chr14   21921764       22039771     NR_111966         SALL2
7   chr15   82763391       83291414  NM_001079533         CPEB1
8   chr15   82763391       83291414  NM_001164465     GOLGA6L10
10  chr15   82763391       83291414  NM_001291420      GOLGA6L9
14  chr15   82763391       83291414     NR_004847      UBE2Q2P2
15  chr15   82763391       83291414     NR_026811     GOLGA2P10
18  chr15   82763391       83291414     NR_045529     ADAMTS7P1
19  chr15   82763391       83291414     NR_102747     LOC727751
21  chr15   82763391       83291414     NR_111943         RPS17
25  chr15   82763391       83291414     NR_111962    GOLGA6L17P
26  chr15   82763391       83291414     NR_120378  LOC102724034
27   chr7   14867215       15004859     NM_004080          DGKB,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr10   81495541       81679383     NR_029407   LOC642361
1   chr10   81495541       81679383     NR_033857     BMS1P21
2   chr10   81495541       81679383     NR_120611  NUTM2B-AS1
5   chr11   81753049       81964107     NR_120571   MIR4300HG
6   chr14   21934722       22122720  NM_001005465      OR10G3
7   chr14   21934722       22122720  NM_001005466      OR10G2
8   chr14   21934722       22122720  NM_001163380       RAB2B
9   chr14   21934722       22122720  NM_001303523        TOX4
10  chr14   21934722       22122720     NM_019852      METTL3
12  chr14   21934722       22122720     NR_111966       SALL2
14  chr16    6462073        6982634  NM_001142334      RBFOX1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187060654      187223025     NR_126347     LINC01036
1    chr1  245057262      245234771  NM_001143943        EFCAB2
4    chr1  245057262      245234771     NR_111907  LOC101928068
5   chr14   21909639       22174112  NM_001001912         OR4E2
6   chr14   21909639       22174112  NM_001005465        OR10G3
7   chr14   21909639       22174112  NM_001005466        OR10G2
8   chr14   21909639       22174112  NM_001163380         RAB2B
9   chr14   21909639       22174112  NM_001303523          TOX4
10  chr14   21909639       22174112  NM_001317107         OR4E1
11  chr14   21909639       22174112     NM_019852        METTL3
13  chr14   21909639       22174112     NR_111966         SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21804032       23344823  NM_001001912         OR4E2
1   chr14   21804032       23344823  NM_001005465        OR10G3
2   chr14   21804032       23344823  NM_001005466        OR10G2
3   chr14   21804032       23344823  NM_001126105        SLC7A7
5   chr14   21804032       23344823  NM_001163380         RAB2B
6   chr14   21804032       23344823  NM_001170629          CHD8
7   chr14   21804032       23344823  NM_001303523          TOX4
8   chr14   21804032       23344823  NM_001317107         OR4E1
9   chr14   21804032       23344823  NM_001318870        MRPL52
10  chr14   21804032       23344823  NM_001329226         LRP10
11  chr14   21804032       23344823     NM_001344          DAD1
12  chr14   21804032       23344823     NM_004995         MMP14
13  chr14   21804032       23344823     NM_005015         OXA1L
14  chr14   21804032       23344823     NM_007192       SUPT16H
15  chr14   21804032       23344823     NM_019852        METTL3
16  chr14   21804032       23344823     NM_020366       RPGRIP1
18  chr14   21804032       23344823     NM_022060         ABHD4
20  chr14   21804032       23344823     NR_002916        SNORD8
21  chr14   21804032       23344823     NR_003029        SNORD9
23  chr14   21804032       23344823     NR_111966         SALL2
25  chr14   21798387       22107776  NM_001005465        OR10G3
26  chr14   21798387       22107776  NM_001005466        OR10G2
27  chr14   21798387       22107776  NM_001163380         RAB2B
28  chr14   21798387       22107776  NM_001170629          CHD8
29  chr14   21798387       22107776  NM_001303523          TOX4
30  chr14   21798387       22107776     NM_007192       SUPT16H
31  chr14   21798387       22107776     NM_019852        METTL3
32  chr14   21798387       22107776     NM_020366       RPGRIP1
35  chr14   21798387       22107776     NR_002916        SNORD8
36  chr14   21798387       22107776     NR_003029        SNORD9
37  chr14   21798387       22107776     NR_111966         SALL2
39  chr15   28491149       29032194  NM_001282468       GOLGA8M
40  chr15   28491149       29032194     NM_004667         HERC2
41  chr15   28491149       29032194     NR_026589       WHAMMP2
42  chr15   28491149       29032194     NR_033351       GOLGA8F
44  chr15   28491149       29032194     NR_033353       GOLGA8G
46  chr15   28491149       29032194     NR_036443       HERC2P9
47  chr15   28491149       29032194     NR_039734     MIR4509-3
49   chr4  190482910      190820000     NR_121679     LINC01262
50   chr4  190482910      190820000     NR_132380     LINC01596
51   chr4  190482910      190820000     NR_135513  LOC105379514
52   chr6  128592409      128737731  NM_001291982         PTPRK
54   chr7  124906993      125580837     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21756349       22002235  NM_001163380     RAB2B
1   chr14   21756349       22002235  NM_001170629      CHD8
2   chr14   21756349       22002235  NM_001303523      TOX4
3   chr14   21756349       22002235     NM_007192   SUPT16H
4   chr14   21756349       22002235     NM_019852    METTL3
5   chr14   21756349       22002235     NM_020366   RPGRIP1
8   chr14   21756349       22002235     NR_002916    SNORD8
9   chr14   21756349       22002235     NR_003029    SNORD9
10  chr14   21756349       22002235     NR_111966     SALL2
12  chr14   21923897       22071296  NM_001005465    OR10G3
13  chr14   21923897       22071296  NM_001163380     RAB2B
14  chr14   21923897       22071296  NM_001303523      TOX4
15  chr14   21923897       22071296     NM_019852    METTL3
17  chr14   21923897       22071296     NR_111966     SALL2
19  chr20   14615347       14795370     NM_080676   MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   30339364       31505562  NM_001080509       TSPAN11
1   chr12   30339364       31505562  NM_001135811        FAM60A
3   chr12   30339364       31505562  NM_001190995          IPO8
4   chr12   30339364       31505562  NM_001319844       CAPRIN2
7   chr12   30339364       31505562     NM_030653         DDX11
9   chr12   30339364       31505562     NR_026806      FLJ13224
10  chr12   30339364       31505562     NR_038927     DDX11-AS1
11  chr12   30339364       31505562     NR_040245     LINC00941
12  chr12   30339364       31505562     NR_135046     LOC645485
13  chr14   21630615       21777550     NM_020366       RPGRIP1
14  chr14   21630615       21777550     NM_031314        HNRNPC
15  chr14   21630615       21777550     NR_038970     LINC00641
17  chr14   21759877       21914490  NM_001170629          CHD8
18  chr14   21759877       21914490     NM_007192       SUPT16H
19  chr14   21759877       21914490     NM_020366       RPGRIP1
21  chr14   21759877       21914490     NR_002916        SNORD8
22  chr14   21759877       21914490     NR_003029        SNORD9
23  chr15   59906900       60036470  NM_001320674         BNIP2
25  chr15   59906900       60036470  NM_001320929        GTF2A2
28  chr15   59906900       60036470     NM_004751         GCNT3
29   chr7    6756841        7262472  NM_001099697      RSPH10B2
30   chr7    6756841        7262472     NM_020156       C1GALT1
31   chr7    6756841        7262472     NM_198097         CCZ1B
32   chr7    6756841        7262472     NR_002217        PMS2CL
33   chr7    6756841        7262472     NR_034022  LOC100131257
34   chr7    6756841        7262472     NR_037454       MIR3683
35   chr9   10001848       11533981     NM_002839         PTPRD
36   chr9   10001848       11533981     NR_110696     PTPRD-AS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   22423043       24697183     NM_000231          SGCG
1   chr13   22423043       24697183  NM_001007537      C1QTNF9B
2   chr13   22423043       24697183  NM_001014442  C1QTNF9B-AS1
4   chr13   22423043       24697183  NM_001204458      TNFRSF19
5   chr13   22423043       24697183  NM_001278055          SACS
6   chr13   22423043       24697183  NM_001286792       SPATA13
7   chr13   22423043       24697183     NM_005932         MIPEP
11  chr13   22423043       24697183     NR_033774       BASP1P1
12  chr13   22423043       24697183     NR_038995     LINC00327
13  chr13   22423043       24697183     NR_047040     LINC00424
14  chr13   22423043       24697183     NR_073430   ANKRD20A19P
15  chr13   22423043       24697183     NR_103450      SACS-AS1
16  chr13   22423043       24697183     NR_103810     LINC00540
19  chr13   22423043       24697183     NR_138043     LINC00621
20  chr22   17209527       17362044     NM_175878          XKR3
21  chr22   17209527       17362044     NR_003607       HSFY1P1
22  chr22   17209527       17362044     NR_134584  LOC101929350
23   chr4  169217966      169784103  NM_001012967        DDX60L
24   chr4  169217966      169784103  NM_001166108         PALLD
28   chr4  169217966      169784103     NM_017631         DDX60
29   chr5   66235431       66404529  NM_001164664         MAST4
34   chr5   66235431       66404529     NR_111908     MAST4-AS1
35   chr8  111903088      113139145     NR_125416     LINC01608
37   chr8  111903088      113139145     NR_125418     LINC01609,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr15   30251823       30373357  NM_001301025      TJP1
1  chr16   76400260       76503577  NM_001322181   CNTNAP4
3   chr6   79359549       79587127  NM_001010844  IRAK1BP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  130289304      130420274     NM_133448      TMEM132D
1   chr15   28648527       29442715  NM_001130414         APBA2
2   chr15   28648527       29442715  NM_001282468       GOLGA8M
3   chr15   28648527       29442715     NM_015307      FAM189A1
4   chr15   28648527       29442715     NR_026589       WHAMMP2
5   chr15   28648527       29442715     NR_033351       GOLGA8F
6   chr15   28648527       29442715     NR_033353       GOLGA8G
7   chr15   28648527       29442715     NR_036443       HERC2P9
8   chr15   28648527       29442715     NR_036475  LOC100289656
9   chr15   28648527       29442715     NR_037599     PDCD6IPP2
10  chr15   28648527       29442715     NR_039734     MIR4509-3
12  chr15   28648527       29442715     NR_047567     GOLGA6L7P
13  chr16   29536695       29661753     NR_049833     MIR3680-2
14  chr16   29536695       29661753     NR_135305        SMG1P2
16   chr3  196749605      197034027  NM_001204386          DLG1
19   chr3  196749605      197034027     NM_005929         MELTF
21   chr3  196749605      197034027     NR_038289      DLG1-AS1
22   chr3  196749605      197034027     NR_039960       MIR4797,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21947144       22058660  NM_001005465     OR10G3
1   chr14   21947144       22058660  NM_001303523       TOX4
2   chr14   21947144       22058660     NM_019852     METTL3
3   chr14   21947144       22058660     NR_111966      SALL2
5   chr15   28285199       28421989     NM_000275       OCA2
7   chr15   28285199       28421989     NM_004667      HERC2
8    chr7   53298916       54077942     NR_038371  LINC01446
9    chr8   48445304       48722698  NM_001080394      SPIDR
10   chr8   48445304       48722698     NM_005195      CEBPD
11   chr8   48445304       48722698     NM_006904      PRKDC
12   chr9   41888415       42001029     NR_003670     FGF7P3
13   chr9   41888415       42001029     NR_015363      GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67692104       67886435  NM_001127384        CTNNA3
2   chr16   16399747       16519787  NM_001282511        NPIPA8
3   chr16   16399747       16519787     NR_036141     MIR3180-1
4   chr16   16399747       16519787     NR_036142     MIR3180-2
5   chr16   16399747       16519787     NR_036447        PKD1P1
6   chr16   16399747       16519787     NR_103772  LOC100288162
7   chr16   16399747       16519787     NR_106766     MIR6511A1
8   chr16   16399747       16519787     NR_106971     MIR6511A4
9   chr16   16399747       16519787     NR_107060     MIR6770-2
10  chr16   16399747       16519787     NR_128713     MIR3670-4
11   chr9  102218427      102738988     NM_017919         STX17
12   chr9  102218427      102738988     NM_173199         NR4A3
14   chr9  102218427      102738988     NR_038853     STX17-AS1
15   chr9  102218427      102738988     NR_109802  LOC101928438,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143679245      143954534  NM_001123068       PPIAL4G
1    chr1  143679245      143954534  NM_001287385        FAM72C
2    chr1  143679245      143954534  NM_001345942        FAM72D
6    chr1  143679245      143954534     NR_104014     LINC01138
7    chr1  143679245      143954534     NR_111930  LOC100132057
9   chr11  108548387      110104628  NM_001260492           RDX
12  chr11  108548387      110104628     NM_004398         DDX10
13  chr11  108548387      110104628     NM_033390       ZC3H12C
14  chr11  108548387      110104628     NM_207645      C11orf87
15  chr12    5083952        5457655     NM_002234         KCNA5
16  chr12    5083952        5457655     NR_120476  LOC101929584
18   chr6  129257134      129775426  NM_001079823         LAMA2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  186189368      186466642  NM_001164245       C1orf27
1    chr1  186189368      186466642  NM_001303232          PRG4
2    chr1  186189368      186466642     NM_002597           PDC
3    chr1  186189368      186466642     NM_003292           TPR
4    chr1  186189368      186466642     NM_022375          OCLM
6    chr1  186189368      186466642     NR_126002  LOC102724919
7   chr14   21902236       22145025  NM_001001912         OR4E2
8   chr14   21902236       22145025  NM_001005465        OR10G3
9   chr14   21902236       22145025  NM_001005466        OR10G2
10  chr14   21902236       22145025  NM_001163380         RAB2B
11  chr14   21902236       22145025  NM_001303523          TOX4
12  chr14   21902236       22145025  NM_001317107         OR4E1
13  chr14   21902236       22145025     NM_019852        METTL3
14  chr14   21902236       22145025     NM_020920          CHD8
16  chr14   21902236       22145025     NR_111966         SALL2
18  chr14   42071590       42790747  NM_001346175         LRFN5
19   chr4  165929782      166044993  NM_001100389       TMEM192
20   chr4  165929782      166044993     NM_152620        TRIM60
21   chr7   64110049       64233184  NM_001282360        ZNF107
23   chr7   64110049       64233184     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21901516       22002280  NM_001163380      RAB2B
1   chr14   21901516       22002280  NM_001303523       TOX4
2   chr14   21901516       22002280     NM_019852     METTL3
3   chr14   21901516       22002280     NM_020920       CHD8
5   chr14   21901516       22002280     NR_111966      SALL2
7   chr15   28661419       28797364     NR_033351    GOLGA8F
8   chr15   28661419       28797364     NR_033353    GOLGA8G
9   chr15   28661419       28797364     NR_039734  MIR4509-3
11   chr2  210260868      210373479  NM_001039538       MAP2
12   chr7  110596021      110728387  NM_001244606     IMMP2L
14   chr7  110536102      111065566  NM_001099658      LRRN3
15   chr7  110536102      111065566  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12853538       12969538  NM_001009611       PRAMEF4
1    chr1   12853538       12969538  NM_001013631      HNRNPCL1
2    chr1   12853538       12969538  NM_001146181      HNRNPCL3
3    chr1   12853538       12969538  NM_001146344      PRAMEF11
4    chr1   12853538       12969538  NM_001294139       PRAMEF1
5    chr1   12853538       12969538  NM_001302551      HNRNPCL4
7    chr1   12853538       12969538     NM_023014       PRAMEF2
8   chr14   21879966       21994538  NM_001163380         RAB2B
9   chr14   21879966       21994538  NM_001170629          CHD8
10  chr14   21879966       21994538  NM_001303523          TOX4
11  chr14   21879966       21994538     NM_019852        METTL3
14  chr14   21879966       21994538     NR_111966         SALL2
16  chr16    6439586        6914226  NM_001142334        RBFOX1
19   chr2  215505828      215676839     NM_000465         BARD1
20   chr2  215505828      215676839     NR_110292  LOC101928103
21  chr22   32475681       32662125     NM_000343        SLC5A1
22  chr22   32475681       32662125  NM_001010859      C22orf42
23  chr22   32475681       32662125  NM_001098527         RFPL2
28  chr22   32475681       32662125     NM_014227        SLC5A4
29  chr22   32475681       32662125     NR_040114       AP1B1P1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21678138       21791861     NM_020366   RPGRIP1
1   chr14   21678138       21791861     NM_031314    HNRNPC
2   chr14   21783533       21913162  NM_001170629      CHD8
3   chr14   21783533       21913162     NM_007192   SUPT16H
4   chr14   21783533       21913162     NM_020366   RPGRIP1
6   chr14   21783533       21913162     NR_002916    SNORD8
7   chr14   21783533       21913162     NR_003029    SNORD9
8   chr14   45465960       45625369  NM_001308120   FAM179B
9   chr14   45465960       45625369  NM_001308133     FANCM
11  chr14   45465960       45625369     NM_002013     FKBP3
12  chr14   45465960       45625369     NM_017922    PRPF39
13  chr14   45465960       45625369     NR_003691  SNORD127
14  chr15   77626422       77799045  NM_001304505    HMG20A
15  chr15   77626422       77799045     NM_024776     PEAK1
16   chr6   79321868       79777290  NM_001010844  IRAK1BP1
17   chr6   79321868       79777290     NM_017934      PHIP
18   chr6   97392915       97515844  NM_001286251    KLHL32,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21826421       21940217  NM_001163380     RAB2B
1  chr14   21826421       21940217  NM_001170629      CHD8
2  chr14   21826421       21940217     NM_007192   SUPT16H
5  chr14   21826421       21940217     NR_002916    SNORD8
6  chr14   21826421       21940217     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr22   19024095       19192074  NM_001184781      DGCR2
1   chr22   19024095       19192074  NM_001256534    SLC25A1
2   chr22   19024095       19192074     NM_001835     CLTCL1
3   chr22   19024095       19192074     NM_005315       GSC2
5   chr22   19024095       19192074     NM_022719     DGCR14
6   chr22   19024095       19192074     NM_053006      TSSK2
7   chr22   19024095       19192074     NR_024157     DGCR11
8   chr22   19024095       19192074     NR_103767  LINC01311
9    chr9  116581331      116897507  NM_001318041     ZNF618
10   chr9  116581331      116897507     NM_001633       AMBP
11   chr9  116581331      116897507     NM_138424      KIF12,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143738657      143843258  NM_001123068       PPIAL4G
1    chr1  143738657      143843258     NR_104014     LINC01138
2   chr12   85443825       85686829  NM_001079910        LRRIQ1
3   chr12   85443825       85686829     NM_006982          ALX1
4   chr15  100171212      100292029  NM_001130928         MEF2A
5   chr15  100171212      100292029  NM_001284417        LYSMD4
8   chr16   16372465       16512112  NM_001004067         NOMO3
9   chr16   16372465       16512112  NM_001282511        NPIPA8
10  chr16   16372465       16512112     NR_036140     MIR3179-1
11  chr16   16372465       16512112     NR_036141     MIR3180-1
12  chr16   16372465       16512112     NR_036142     MIR3180-2
13  chr16   16372465       16512112     NR_036447        PKD1P1
14  chr16   16372465       16512112     NR_103772  LOC100288162
15  chr16   16372465       16512112     NR_106766     MIR6511A1
16  chr16   16372465       16512112     NR_106971     MIR6511A4
17  chr16   16372465       16512112     NR_107060     MIR6770-2
18  chr16   16372465       16512112     NR_128713     MIR3670-4
19   chr6  162762017      163078095     NM_013988         PARK2
20   chr9   67030891       67163218     NR_046175     LOC286297,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21778562       21913949  NM_001170629      CHD8
1   chr14   21778562       21913949     NM_007192   SUPT16H
2   chr14   21778562       21913949     NM_020366   RPGRIP1
4   chr14   21778562       21913949     NR_002916    SNORD8
5   chr14   21778562       21913949     NR_003029    SNORD9
6   chr15   28200905       28325734     NM_000275      OCA2
8    chr7  110686315      110837769  NM_001099658     LRRN3
9    chr7  110686315      110837769  NM_001244606    IMMP2L
11   chr7  133244544      133388322     NM_021807     EXOC4,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  112398521      112610642  NM_001270945    LOC643355
1    chr1  112398521      112610642     NM_172198        KCND3
2    chr1  112398521      112610642     NR_046619    KCND3-AS1
3    chr1  112398521      112610642     NR_046783    KCND3-IT1
4    chr1  144720250      145078409  NM_001002810      PDE4DIP
11   chr1  144720250      145078409  NM_001277444        NBPF9
12   chr1  144720250      145078409  NM_001278267       NBPF20
14   chr1  144720250      145078409     NR_102405        NBPF8
15  chr16   61796093       62017671     NM_001796         CDH8
16  chr20   14693946       16224552  NM_001033087      MACROD2
18  chr20   14693946       16224552     NR_037841  MACROD2-AS1
20  chr20   14693946       16224552     NR_130924    LOC613266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   89368221       90038710  NM_001199777         POC1B
1   chr12   89368221       90038710  NM_001199781  POC1B-GALNT4
2   chr12   89368221       90038710     NM_001682        ATP2B1
3   chr12   89368221       90038710     NM_001946         DUSP6
4   chr12   89368221       90038710     NM_003774        GALNT4
6   chr12   89368221       90038710     NR_038385     LOC728084
7   chr15   28548809       29262114  NM_001130414         APBA2
8   chr15   28548809       29262114  NM_001282468       GOLGA8M
9   chr15   28548809       29262114     NM_004667         HERC2
10  chr15   28548809       29262114     NR_026589       WHAMMP2
11  chr15   28548809       29262114     NR_033351       GOLGA8F
13  chr15   28548809       29262114     NR_033353       GOLGA8G
15  chr15   28548809       29262114     NR_036443       HERC2P9
16  chr15   28548809       29262114     NR_036475  LOC100289656
17  chr15   28548809       29262114     NR_037599     PDCD6IPP2
18  chr15   28548809       29262114     NR_039734     MIR4509-3
20  chr15   28548809       29262114     NR_047567     GOLGA6L7P
21   chr5     155371         269001  NM_001080478       LRRC14B
22   chr5     155371         269001     NM_004168          SDHA
23   chr5     155371         269001     NM_052909      PLEKHG4B
24   chr5     155371         269001     NM_145265       CCDC127
25   chr7   64037968       64633435  NM_001007253        ERV3-1
26   chr7   64037968       64633435  NM_001160183        ZNF138
27   chr7   64037968       64633435  NM_001282360        ZNF107
28   chr7   64037968       64633435     NM_015852        ZNF117
29   chr7   64037968       64633435     NM_021148        ZNF273
30   chr7   64037968       64633435     NR_033245     LOC641746
31   chr7   64037968       64633435     NR_033416        CCT6P3
33   chr7   64037968       64633435     NR_077227  LOC100128885
35   chr7   64037968       64633435     NR_106898       MIR6839
36   chr7   75772004       75899895  NM_001110199         SRRM3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12820105       14196502  NM_001006624          PDPN
1    chr1   12820105       14196502  NM_001007257         PRDM2
2    chr1   12820105       14196502  NM_001009611       PRAMEF4
3    chr1   12820105       14196502  NM_001010847        LRRC38
4    chr1   12820105       14196502  NM_001010889       PRAMEF6
6    chr1   12820105       14196502  NM_001010890       PRAMEF9
7    chr1   12820105       14196502  NM_001012276       PRAMEF8
10   chr1   12820105       14196502  NM_001013407       PRAMEF5
12   chr1   12820105       14196502  NM_001013631      HNRNPCL1
13   chr1   12820105       14196502  NM_001024661      PRAMEF14
15   chr1   12820105       14196502  NM_001039361      PRAMEF10
17   chr1   12820105       14196502  NM_001080830      PRAMEF12
18   chr1   12820105       14196502  NM_001098376      PRAMEF15
20   chr1   12820105       14196502  NM_001099790      PRAMEF19
22   chr1   12820105       14196502  NM_001099850      PRAMEF18
24   chr1   12820105       14196502  NM_001099851      PRAMEF17
26   chr1   12820105       14196502  NM_001099852      PRAMEF20
28   chr1   12820105       14196502  NM_001100631      PRAMEF22
31   chr1   12820105       14196502  NM_001136561      HNRNPCL2
32   chr1   12820105       14196502  NM_001146181      HNRNPCL3
33   chr1   12820105       14196502  NM_001146344      PRAMEF11
34   chr1   12820105       14196502  NM_001291381     PRAMEF33P
36   chr1   12820105       14196502  NM_001294139       PRAMEF1
37   chr1   12820105       14196502  NM_001300891      PRAMEF27
40   chr1   12820105       14196502  NM_001302551      HNRNPCL4
41   chr1   12820105       14196502  NM_001306072      PRAMEF26
42   chr1   12820105       14196502  NM_001310134      PRAMEF25
46   chr1   12820105       14196502     NM_023014       PRAMEF2
47   chr1   12820105       14196502     NM_152290      C1orf158
49   chr1   12820105       14196502     NR_111945     PRAMEF36P
51  chr16   18408116       18695093  NM_001004060         NOMO2
52  chr16   18408116       18695093  NM_001282511        NPIPA8
53  chr16   18408116       18695093     NR_003569       ABCC6P1
54  chr16   18408116       18695093     NR_036140     MIR3179-1
55  chr16   18408116       18695093     NR_036142     MIR3180-2
56  chr16   18408116       18695093     NR_036144     MIR3180-3
57  chr16   18408116       18695093     NR_037442     MIR3670-1
58  chr16   18408116       18695093     NR_103772  LOC100288162
59  chr16   18408116       18695093     NR_106971     MIR6511A4
60  chr16   18408116       18695093     NR_107060     MIR6770-2
61  chr19   47852161       48121376  NM_001009813         MEIS3
62  chr19   47852161       48121376  NM_001277075        ZNF541
63  chr19   47852161       48121376  NM_001291296          KPTN
66  chr19   47852161       48121376     NM_014681         DHX34
67  chr19   47852161       48121376     NM_015063        SLC8A2
68  chr19   47852161       48121376     NM_015711       GLTSCR1
69  chr19   47852161       48121376     NR_038452      NAPA-AS1
70  chr19   47852161       48121376     NR_038457          NAPA
71   chr9  116813198      117302904     NM_000607          ORM1
72   chr9  116813198      117302904     NM_000608          ORM2
73   chr9  116813198      117302904  NM_001083885          WHRN
74   chr9  116813198      117302904  NM_001317950          AKNA
76   chr9  116813198      117302904  NM_001318041        ZNF618
77   chr9  116813198      117302904     NM_001633          AMBP
79   chr9  116813198      117302904     NM_032888       COL27A1
80   chr9  116813198      117302904     NM_138424         KIF12
81   chr9  116813198      117302904     NR_030255        MIR455,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21812549       21966645  NM_001163380         RAB2B
1   chr14   21812549       21966645  NM_001170629          CHD8
2   chr14   21812549       21966645  NM_001303523          TOX4
3   chr14   21812549       21966645     NM_007192       SUPT16H
4   chr14   21812549       21966645     NM_019852        METTL3
5   chr14   21812549       21966645     NM_020366       RPGRIP1
8   chr14   21812549       21966645     NR_002916        SNORD8
9   chr14   21812549       21966645     NR_003029        SNORD9
10  chr16   16447840       16576021  NM_001282511        NPIPA8
11  chr16   16447840       16576021     NR_106971     MIR6511A4
12  chr16   21470923       21626862  NM_001077180        METTL9
14  chr16   21470923       21626862     NR_002594      SLC7A5P2
15  chr16   21470923       21626862     NR_027155        SMG1P3
16  chr16   21470923       21626862     NR_049833     MIR3680-2
17  chr16   21470923       21626862     NR_110930  LOC101927814
18  chr16   80793252       80941632     NM_152342         CDYL2
19  chr16   80793252       80941632     NR_131948       PRCAT47
20  chr17   68389731       69103036     NR_104152        CASC17
21   chr2   25466496       25879612  NM_001256304          DTNB
23   chr2   25466496       25879612  NM_001320892        DNMT3A
32   chr2   25466496       25879612     NR_031570       MIR1301
33   chr2  167172247      167487309     NM_002976         SCN7A
34   chr2  167172247      167487309     NM_002977         SCN9A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21752486       21876526  NM_001170629          CHD8
1   chr14   21752486       21876526     NM_007192       SUPT16H
2   chr14   21752486       21876526     NM_020366       RPGRIP1
4   chr14   21752486       21876526     NR_002916        SNORD8
5   chr14   21752486       21876526     NR_003029        SNORD9
6    chr7     125079         252021     NM_020223        FAM20C
7    chr7     125079         252021     NR_108065  LOC100507642
8    chr7     125079         252021     NR_134324  LOC105375115
9    chr7     125079         252021     NR_134325  LOC102723672
10   chr9   11776165       13439308     NM_000550         TYRP1
11   chr9   11776165       13439308  NM_001261407          MPDZ
13   chr9   11776165       13439308     NM_203403       LURAP1L
14   chr9   11776165       13439308     NR_033863      FLJ41200
15   chr9   11776165       13439308     NR_125775   LURAP1L-AS1
16   chr9   11776165       13439308     NR_132976      SNORD137
17   chr9   14923756       15208178  NM_001168339        TTC39B
19   chr9   14923756       15208178     NR_003920     LOC389705,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr1  162794581      162896774     NM_178550   CCDC190
1  chr14   21893848       22029843  NM_001163380     RAB2B
2  chr14   21893848       22029843  NM_001170629      CHD8
3  chr14   21893848       22029843  NM_001303523      TOX4
4  chr14   21893848       22029843     NM_019852    METTL3
7  chr14   21893848       22029843     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  134300576      134530811     NR_033852  LOC283177
1   chr14   21759317       21962146  NM_001163380      RAB2B
2   chr14   21759317       21962146  NM_001170629       CHD8
3   chr14   21759317       21962146  NM_001303523       TOX4
4   chr14   21759317       21962146     NM_007192    SUPT16H
5   chr14   21759317       21962146     NM_020366    RPGRIP1
8   chr14   21759317       21962146     NR_002916     SNORD8
9   chr14   21759317       21962146     NR_003029     SNORD9
10  chr14   38154823       38340674  NM_001310135       TTC6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11     684637        1053027     NM_001004         RPLP2
1   chr11     684637        1053027  NM_001025234        TSPAN4
4   chr11     684637        1053027  NM_001039490         CD151
5   chr11     684637        1053027  NM_001042463        TMEM80
6   chr11     684637        1053027  NM_001142675         CHID1
7   chr11     684637        1053027  NM_001191060      SLC25A22
10  chr11     684637        1053027  NM_001286606       CRACR2B
11  chr11     684637        1053027  NM_001293167         PANO1
12  chr11     684637        1053027  NM_001318824         PDDC1
13  chr11     684637        1053027  NM_001323425  LOC101927503
15  chr11     684637        1053027     NM_005961          MUC6
16  chr11     684637        1053027     NM_006755        TALDO1
17  chr11     684637        1053027     NM_012305         AP2A2
18  chr11     684637        1053027     NM_016564         CEND1
19  chr11     684637        1053027     NM_020376        PNPLA2
20  chr11     684637        1053027     NM_021008         DEAF1
21  chr11     684637        1053027     NM_021128        POLR2L
22  chr11     684637        1053027     NM_022772        EPS8L2
25  chr11     684637        1053027     NM_145886         PIDD1
26  chr11     684637        1053027     NR_002585       SNORA52
27  chr11     684637        1053027     NR_126342     LOC171391
28  chr14   21750350       21950868  NM_001163380         RAB2B
29  chr14   21750350       21950868  NM_001170629          CHD8
30  chr14   21750350       21950868  NM_001303523          TOX4
31  chr14   21750350       21950868     NM_007192       SUPT16H
32  chr14   21750350       21950868     NM_020366       RPGRIP1
35  chr14   21750350       21950868     NR_002916        SNORD8
36  chr14   21750350       21950868     NR_003029        SNORD9
37  chr15   28423627       28670518     NM_004667         HERC2
38  chr15   28423627       28670518     NR_033351       GOLGA8F
39  chr15   28423627       28670518     NR_033353       GOLGA8G
40  chr19   21455307       21852527  NM_001001415        ZNF429
41  chr19   21455307       21852527  NM_001297560        ZNF708
44  chr19   21455307       21852527     NM_145326        ZNF493
46  chr19   21455307       21852527     NR_027130        ZNF738
47  chr19   21455307       21852527     NR_037194     LINC00664
48   chr2  186144598      187462397     NM_002210         ITGAV
49   chr2  186144598      187462397     NM_018471        ZC3H15
50   chr2  186144598      187462397     NM_173651         FSIP2
51   chr2  186144598      187462397     NR_110214  LOC101927196
54   chr2  186144598      187462397     NR_110218     LINC01473
55   chr2  186144598      187462397     NR_144453     FSIP2-AS1
57   chr3     601800        2875940  NM_001206955         CNTN4
58   chr3     601800        2875940  NM_001289081         CNTN6
60   chr3     601800        2875940     NR_046555     CNTN4-AS2
61   chr3     601800        2875940     NR_110118     LINC01266
62   chr9    9888453       10124818     NM_002839         PTPRD,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   21796308       21902212  NM_001170629       CHD8
1  chr14   21796308       21902212     NM_007192    SUPT16H
2  chr14   21796308       21902212     NM_020366    RPGRIP1
4  chr14   21796308       21902212     NR_002916     SNORD8
5  chr14   21796308       21902212     NR_003029     SNORD9
6   chr5   12423564       12693799     NR_033383  LINC01194
7   chr5   12423564       12693799     NR_039659    MIR4454,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21916340       22065330  NM_001005465    OR10G3
1  chr14   21916340       22065330  NM_001163380     RAB2B
2  chr14   21916340       22065330  NM_001303523      TOX4
3  chr14   21916340       22065330     NM_019852    METTL3
5  chr14   21916340       22065330     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   93142342       93530522     NM_004466          GPC5
1   chr13   93142342       93530522     NR_046520      GPC5-AS1
4   chr13   93142342       93530522     NR_049840      MIR548AS
5   chr14   21764067       21886562  NM_001170629          CHD8
6   chr14   21764067       21886562     NM_007192       SUPT16H
7   chr14   21764067       21886562     NM_020366       RPGRIP1
9   chr14   21764067       21886562     NR_002916        SNORD8
10  chr14   21764067       21886562     NR_003029        SNORD9
11  chr14   45642896       47239686  NM_001308133         FANCM
12  chr14   45642896       47239686     NM_018353      MIS18BP1
13  chr14   45642896       47239686     NM_080746        RPL10L
14  chr14   45642896       47239686     NR_102699     LINC00871
16  chr14   61758350       61862233     NM_006255         PRKCH
17  chr17   14203705       14685875     NM_006041      HS3ST3B1
18  chr17   14203705       14685875     NR_026880      MGC12916
19   chr2   97215263       97413270  NM_001115016        KANSL3
20   chr2   97215263       97413270  NM_001293083        FER1L5
21   chr2   97215263       97413270  NM_001319085        ARID5A
23   chr2   97215263       97413270  NM_001322354        LMAN2L
26  chr21   29418407       29560130     NR_126010     LOC284825
28  chr21   29418407       29560130     NR_126012  LOC101927973,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143107541      143240700     NR_110761  LOC102723769
1   chr14   21932514       22148968  NM_001001912         OR4E2
2   chr14   21932514       22148968  NM_001005465        OR10G3
3   chr14   21932514       22148968  NM_001005466        OR10G2
4   chr14   21932514       22148968  NM_001163380         RAB2B
5   chr14   21932514       22148968  NM_001303523          TOX4
6   chr14   21932514       22148968  NM_001317107         OR4E1
7   chr14   21932514       22148968     NM_019852        METTL3
9   chr14   21932514       22148968     NR_111966         SALL2
11  chr15   98275489       98437478     NR_024172     LINC00923
12   chr3   41311640       41512380  NM_001322500          ULK4
14   chr4   30736412       30878047  NM_001173523         PCDH7
15   chr7    8744839        8845915     NM_152745         NXPH1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  243506870      243678553  NM_001206729           AKT3
2    chr1  243506870      243678553     NM_006642        SDCCAG8
4    chr1  243506870      243678553     NR_039824        MIR4677
5   chr14   21757813       21866977  NM_001170629           CHD8
6   chr14   21757813       21866977     NM_007192        SUPT16H
7   chr14   21757813       21866977     NM_020366        RPGRIP1
9   chr14   21757813       21866977     NR_002916         SNORD8
10  chr14   21757813       21866977     NR_003029         SNORD9
11  chr14   42080960       42285158  NM_001346175          LRFN5
12  chr17    3372262        3784004     NM_000049           ASPA
13  chr17    3372262        3784004  NM_001014764           EMC6
14  chr17    3372262        3784004  NM_001114118          NCBP3
16  chr17    3372262        3784004  NM_001170696        SPATA22
20  chr17    3372262        3784004  NM_001204698        TAX1BP3
22  chr17    3372262        3784004     NM_002208          ITGAE
23  chr17    3372262        3784004     NM_004937           CTNS
24  chr17    3372262        3784004     NM_013276           SHPK
25  chr17    3372262        3784004     NM_018727          TRPV1
26  chr17    3372262        3784004     NM_031965           GSG2
27  chr17    3372262        3784004     NM_032294         CAMKK1
32  chr17    3372262        3784004     NM_145068          TRPV3
35  chr17    3372262        3784004     NM_175080          P2RX5
36  chr17    3372262        3784004     NR_037928  P2RX5-TAX1BP3
37  chr20    8085145        8316037     NM_015192          PLCB1
38  chr20    8085145        8316037     NR_046809      PLCB1-IT1
39  chr22   17164152       17346698     NM_175878           XKR3
40  chr22   17164152       17346698     NR_003607        HSFY1P1
41  chr22   17164152       17346698     NR_134584   LOC101929350
42  chr22   20103944       20204678  NM_001243537        CCDC188
43  chr22   20103944       20204678  NM_001278639         RANBP1
46  chr22   20103944       20204678     NM_013373         ZDHHC8
47  chr22   20103944       20204678     NM_022727         TRMT2A
48  chr22   20103944       20204678     NR_026919      LINC00896
49  chr22   20103944       20204678     NR_038460      LOC284865
50   chr7  110682411      110930589  NM_001099658          LRRN3
51   chr7  110682411      110930589  NM_001244606         IMMP2L
53   chr8  100563184      100946580     NM_004374          COX6C
54   chr8  100563184      100946580     NM_017890         VPS13B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143660814      143924503  NM_001123068       PPIAL4G
1    chr1  143660814      143924503  NM_001287385        FAM72C
2    chr1  143660814      143924503  NM_001345942        FAM72D
6    chr1  143660814      143924503     NR_104014     LINC01138
7    chr1  143660814      143924503     NR_106967       MIR6077
8    chr1  143660814      143924503     NR_111930  LOC100132057
10  chr16   18104086       18432629  NM_001282511        NPIPA8,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68018647       68166467  NM_001127384        CTNNA3
2   chr13   63305010       63434669     NR_047029     LINC00448
5   chr14   21775276       21884508  NM_001170629          CHD8
6   chr14   21775276       21884508     NM_007192       SUPT16H
7   chr14   21775276       21884508     NM_020366       RPGRIP1
9   chr14   21775276       21884508     NR_002916        SNORD8
10  chr14   21775276       21884508     NR_003029        SNORD9
11   chr4   11799666       13340457     NR_125910  LOC101929019
12   chr4   91114174       91246316  NM_001145065        CCSER1
14   chr7  110678904      111214728  NM_001099658         LRRN3
15   chr7  110678904      111214728  NM_001244606        IMMP2L
17   chr9   30399867       30500943     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21756356       21888302  NM_001170629      CHD8
1   chr14   21756356       21888302     NM_007192   SUPT16H
2   chr14   21756356       21888302     NM_020366   RPGRIP1
4   chr14   21756356       21888302     NR_002916    SNORD8
5   chr14   21756356       21888302     NR_003029    SNORD9
6   chr15   30278887       30379828  NM_001282472   GOLGA8J
7   chr16    8641399        8769237     NM_020686      ABAT
8   chr16    8641399        8769237     NM_024109   METTL22
9   chr21   17854826       18200495     NR_027790  MIR99AHG
11  chr21   17854826       18200495     NR_029480  MIRLET7C
12  chr21   17854826       18200495     NR_029514    MIR99A
13  chr21   17854826       18200495     NR_029694  MIR125B2
22   chr6  162693624      162813664     NM_013988     PARK2
23   chr7  110357519      110528941  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28699392       32226482  NM_001039841     ARHGAP11B
1   chr15   28699392       32226482  NM_001130414         APBA2
2   chr15   28699392       32226482  NM_001146094          FAN1
4   chr15   28699392       32226482  NM_001243538     LOC283710
5   chr15   28699392       32226482  NM_001252020         TRPM1
8   chr15   28699392       32226482  NM_001282468       GOLGA8M
9   chr15   28699392       32226482  NM_001282472       GOLGA8J
10  chr15   28699392       32226482  NM_001282484       GOLGA8R
11  chr15   28699392       32226482  NM_001282490       GOLGA8H
12  chr15   28699392       32226482  NM_001301025          TJP1
14  chr15   28699392       32226482  NM_001302461         KLF13
15  chr15   28699392       32226482  NM_001329907        OTUD7A
18  chr15   28699392       32226482     NM_015307      FAM189A1
20  chr15   28699392       32226482     NM_017762        MTMR10
22  chr15   28699392       32226482     NM_138704        NSMCE3
23  chr15   28699392       32226482     NM_139320      CHRFAM7A
24  chr15   28699392       32226482     NR_026589       WHAMMP2
25  chr15   28699392       32226482     NR_026771  DKFZP434L187
26  chr15   28699392       32226482     NR_026858        ULK4P1
27  chr15   28699392       32226482     NR_026859        ULK4P3
28  chr15   28699392       32226482     NR_029624        MIR211
29  chr15   28699392       32226482     NR_033351       GOLGA8F
30  chr15   28699392       32226482     NR_033353       GOLGA8G
31  chr15   28699392       32226482     NR_033933       GOLGA8T
32  chr15   28699392       32226482     NR_036443       HERC2P9
33  chr15   28699392       32226482     NR_036475  LOC100289656
34  chr15   28699392       32226482     NR_037599     PDCD6IPP2
35  chr15   28699392       32226482     NR_038253  LOC100288637
37  chr15   28699392       32226482     NR_039734     MIR4509-3
38  chr15   28699392       32226482     NR_047567     GOLGA6L7P
39  chr15   28699392       32226482     NR_072991      HERC2P10
40  chr15   28699392       32226482     NR_135221  LOC100130111
41  chr15   28699392       32226482     NR_135834  LOC102725022,      chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr14   21843234       24651660     NM_000257           MYH7
1    chr14   21843234       24651660  NM_001001912          OR4E2
2    chr14   21843234       24651660  NM_001005465         OR10G3
3    chr14   21843234       24651660  NM_001005466         OR10G2
4    chr14   21843234       24651660  NM_001018073           PCK2
5    chr14   21843234       24651660  NM_001039619          PRMT5
6    chr14   21843234       24651660  NM_001042635           NGDN
7    chr14   21843234       24651660  NM_001048205           REC8
8    chr14   21843234       24651660  NM_001099780         PSMB11
9    chr14   21843234       24651660  NM_001126105         SLC7A7
11   chr14   21843234       24651660  NM_001130706       C14orf93
12   chr14   21843234       24651660  NM_001130725          PSMB5
14   chr14   21843234       24651660  NM_001146028           JPH4
15   chr14   21843234       24651660  NM_001163380          RAB2B
16   chr14   21843234       24651660  NM_001163484         DCAF11
17   chr14   21843234       24651660  NM_001164815          ACIN1
19   chr14   21843234       24651660  NM_001170629           CHD8
20   chr14   21843234       24651660  NM_001193635        DHRS4L2
22   chr14   21843234       24651660  NM_001199839         BCL2L2
23   chr14   21843234       24651660  NM_001199864  BCL2L2-PABPN1
24   chr14   21843234       24651660  NM_001256323          THTPA
25   chr14   21843234       24651660  NM_001267036         SLC7A8
27   chr14   21843234       24651660  NM_001276318        PPP1R3E
28   chr14   21843234       24651660  NM_001277174            EFS
29   chr14   21843234       24651660  NM_001280558          CPNE6
30   chr14   21843234       24651660  NM_001281529          PSME1
31   chr14   21843234       24651660  NM_001282322        RNF212B
32   chr14   21843234       24651660  NM_001282475          AP1G2
34   chr14   21843234       24651660  NM_001282988          DHRS4
35   chr14   21843234       24651660  NM_001289050       SLC22A17
..     ...        ...            ...           ...            ...
65   chr14   21843234       24651660     NM_020834          HOMEZ
67   chr14   21843234       24651660     NM_022060          ABHD4
68   chr14   21843234       24651660     NM_022478          CDH24
69   chr14   21843234       24651660     NM_022789           IL25
73   chr14   21843234       24651660     NM_033400          ZFHX2
74   chr14   21843234       24651660     NM_138360        CARMIL3
75   chr14   21843234       24651660     NM_138460          CMTM5
77   chr14   21843234       24651660     NM_173527           REM2
82   chr14   21843234       24651660     NM_203402          FITM1
83   chr14   21843234       24651660     NR_002916         SNORD8
84   chr14   21843234       24651660     NR_003029         SNORD9
85   chr14   21843234       24651660     NR_023921      DHRS4-AS1
88   chr14   21843234       24651660     NR_029595        MIR208A
89   chr14   21843234       24651660     NR_030624        MIR208B
90   chr14   21843234       24651660     NR_039856        MIR4707
94   chr14   21843234       24651660     NR_051979           IPO4
95   chr14   21843234       24651660     NR_102688        DHRS4L1
97   chr14   21843234       24651660     NR_106990        MIR7703
98   chr14   21843234       24651660     NR_110002   LOC101926933
100  chr14   21843234       24651660     NR_110555   LOC102724814
101  chr14   21843234       24651660     NR_111966          SALL2
103  chr14   21843234       24651660     NR_120599      PRMT5-AS1
104  chr14   21843234       24651660     NR_126491           MHRT
105  chr16   29550999       29706938  NM_001030288            SPN
106  chr16   29550999       29706938  NM_001318249           QPRT
108  chr16   29550999       29706938     NR_049833      MIR3680-2
109  chr16   29550999       29706938     NR_135305         SMG1P2
111   chr3   60336478       60523349  NM_001320899           FHIT
112   chr4  169179817      169368034  NM_001012967         DDX60L
114   chr4  169179817      169368034     NM_017631          DDX60

[82 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21880864       22032318  NM_001163380      RAB2B
1   chr14   21880864       22032318  NM_001170629       CHD8
2   chr14   21880864       22032318  NM_001303523       TOX4
3   chr14   21880864       22032318     NM_019852     METTL3
6   chr14   21880864       22032318     NR_111966      SALL2
8    chr2   50747240       51262451  NM_001330079      NRXN1
11   chr2   50747240       51262451     NR_130470    MIR8485
12   chr2   50747240       51262451     NR_135237  LOC730100
13   chr3    1738934        2961799  NM_001206955      CNTN4
16   chr3    1738934        2961799     NR_046555  CNTN4-AS2
17   chr6  128676686      129105233  NM_001291982      PTPRK,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   38915421       40513429  NM_001258419        LRRC4C
2    chr2   97315961       98691268     NM_001079         ZAP70
3    chr2   97315961       98691268  NM_001122646       FAM178B
4    chr2   97315961       98691268  NM_001164315       ANKRD36
6    chr2   97315961       98691268  NM_001293083        FER1L5
7    chr2   97315961       98691268  NM_001320849        FAHD2B
8    chr2   97315961       98691268  NM_001322354        LMAN2L
9    chr2   97315961       98691268     NM_001862         COX5B
10   chr2   97315961       98691268     NM_005735        ACTR1B
11   chr2   97315961       98691268     NM_015348       TMEM131
12   chr2   97315961       98691268     NM_016466       ANKRD39
14   chr2   97315961       98691268     NM_017623         CNNM3
15   chr2   97315961       98691268     NM_017789        SEMA4C
16   chr2   97315961       98691268     NM_020184         CNNM4
17   chr2   97315961       98691268     NM_025190      ANKRD36B
19   chr2   97315961       98691268     NM_144994       ANKRD23
22   chr2   97315961       98691268     NR_036074       MIR3127
23   chr2   97315961       98691268     NR_038386     LINC01125
24   chr2   97315961       98691268     NR_103732  LOC100506076
28   chr2   97315961       98691268     NR_110209  LOC101927053
29   chr2   97315961       98691268     NR_130704  LOC100506123
31   chr5  104138427      104601596     NR_000039       RAB9BP1
32   chr7  157296087      157761041  NM_001308267        PTPRN2
34   chr7  157296087      157761041     NR_029689      MIR153-2
35   chr7  157296087      157761041     NR_038966  LOC100506585,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21860999       22356554  NM_001001912     OR4E2
1   chr14   21860999       22356554  NM_001005465    OR10G3
2   chr14   21860999       22356554  NM_001005466    OR10G2
3   chr14   21860999       22356554  NM_001163380     RAB2B
4   chr14   21860999       22356554  NM_001170629      CHD8
5   chr14   21860999       22356554  NM_001303523      TOX4
6   chr14   21860999       22356554  NM_001317107     OR4E1
7   chr14   21860999       22356554     NM_019852    METTL3
10  chr14   21860999       22356554     NR_002916    SNORD8
11  chr14   21860999       22356554     NR_111966     SALL2
13   chr2   97393295       97515134  NM_001322354    LMAN2L
14   chr2   97393295       97515134     NM_016466   ANKRD39
15   chr2   97393295       97515134     NM_017623     CNNM3
16   chr2   97393295       97515134     NM_020184     CNNM4
18   chr2   97393295       97515134     NM_144994   ANKRD23
19   chr2   97393295       97515134     NR_036074   MIR3127
20   chr2  133769911      133887392     NM_207363    NCKAP5
21   chr5   19577087       19697665  NM_001291956     CDH18,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81467303       81590529  NM_001278495        NUTM2B
1   chr10   81467303       81590529     NR_029407     LOC642361
2   chr10   81467303       81590529     NR_120611    NUTM2B-AS1
5   chr15   28817495       30110148  NM_001130414         APBA2
6   chr15   28817495       30110148  NM_001282468       GOLGA8M
7   chr15   28817495       30110148  NM_001301025          TJP1
10  chr15   28817495       30110148     NM_015307      FAM189A1
11  chr15   28817495       30110148     NM_138704        NSMCE3
12  chr15   28817495       30110148     NR_026589       WHAMMP2
13  chr15   28817495       30110148     NR_036443       HERC2P9
14  chr15   28817495       30110148     NR_036475  LOC100289656
15  chr15   28817495       30110148     NR_037599     PDCD6IPP2
16  chr15   28817495       30110148     NR_047567     GOLGA6L7P
17  chr15   28817495       30110148     NR_135221  LOC100130111,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  120575845      120716636     NM_002859           PXN
1   chr12  120575845      120716636     NM_006836          GCN1
3   chr12  120575845      120716636     NM_053275         RPLP0
4   chr12  120575845      120716636     NR_038924       PXN-AS1
5   chr12  120575845      120716636     NR_039719       MIR4498
6   chr14   21784734       21906340  NM_001170629          CHD8
7   chr14   21784734       21906340     NM_007192       SUPT16H
8   chr14   21784734       21906340     NM_020366       RPGRIP1
10  chr14   21784734       21906340     NR_002916        SNORD8
11  chr14   21784734       21906340     NR_003029        SNORD9
12  chr20   10873787       11278579     NR_038972     LOC339593
13  chr20   10873787       11278579     NR_109866  LOC101929413
14   chr5   63813426       63915295  NM_001029875        RGS7BP,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21851545       21976333  NM_001163380         RAB2B
1   chr14   21851545       21976333  NM_001170629          CHD8
2   chr14   21851545       21976333  NM_001303523          TOX4
3   chr14   21851545       21976333     NM_007192       SUPT16H
4   chr14   21851545       21976333     NM_019852        METTL3
7   chr14   21851545       21976333     NR_002916        SNORD8
8   chr14   21851545       21976333     NR_003029        SNORD9
9   chr16   21507326       21650359  NM_001077180        METTL9
11  chr16   21507326       21650359     NR_002594      SLC7A5P2
12  chr16   21507326       21650359     NR_027155        SMG1P3
13  chr16   21507326       21650359     NR_049833     MIR3680-2
14  chr16   21507326       21650359     NR_110930  LOC101927814
15   chr4   93235995       93366965     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   21862516       22360986  NM_001001912       OR4E2
1   chr14   21862516       22360986  NM_001005465      OR10G3
2   chr14   21862516       22360986  NM_001005466      OR10G2
3   chr14   21862516       22360986  NM_001163380       RAB2B
4   chr14   21862516       22360986  NM_001170629        CHD8
5   chr14   21862516       22360986  NM_001303523        TOX4
6   chr14   21862516       22360986  NM_001317107       OR4E1
7   chr14   21862516       22360986     NM_019852      METTL3
10  chr14   21862516       22360986     NR_002916      SNORD8
11  chr14   21862516       22360986     NR_111966       SALL2
13  chr21   13499066       14551344     NR_026916  ANKRD30BP2
14   chr7   14825356       14926090     NM_004080        DGKB,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28662808       28927281     NR_033351       GOLGA8F
1   chr15   28662808       28927281     NR_033353       GOLGA8G
2   chr15   28662808       28927281     NR_036443       HERC2P9
3   chr15   28662808       28927281     NR_039734     MIR4509-3
5   chr16   18115124       18827726  NM_001004060         NOMO2
6   chr16   18115124       18827726     NM_001019        RPS15A
7   chr16   18115124       18827726  NM_001282511        NPIPA8
8   chr16   18115124       18827726  NM_001313858       ARL6IP1
9   chr16   18115124       18827726     NM_015092          SMG1
11  chr16   18115124       18827726     NR_003569       ABCC6P1
12  chr16   18115124       18827726     NR_036140     MIR3179-1
13  chr16   18115124       18827726     NR_036142     MIR3180-2
14  chr16   18115124       18827726     NR_036144     MIR3180-3
15  chr16   18115124       18827726     NR_037442     MIR3670-1
16  chr16   18115124       18827726     NR_103772  LOC100288162
17  chr16   18115124       18827726     NR_106971     MIR6511A4
18  chr16   18115124       18827726     NR_107060     MIR6770-2
19  chr16   68535138       68879774  NM_001305204         ZFP90
21  chr16   68535138       68879774  NM_001317184          CDH1
22  chr16   68535138       68879774  NM_001317195          CDH3
23  chr16   68535138       68879774     NM_024562        TANGO6
24  chr16   68535138       68879774     NR_106988     MIR7641-2
25   chr7   71490501       71789621  NM_001017440         CALN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16328976       16516974  NM_001004067         NOMO3
1   chr16   16328976       16516974  NM_001282511        NPIPA8
2   chr16   16328976       16516974     NR_036140     MIR3179-1
3   chr16   16328976       16516974     NR_036141     MIR3180-1
4   chr16   16328976       16516974     NR_036142     MIR3180-2
5   chr16   16328976       16516974     NR_036447        PKD1P1
6   chr16   16328976       16516974     NR_103772  LOC100288162
7   chr16   16328976       16516974     NR_106766     MIR6511A1
8   chr16   16328976       16516974     NR_106971     MIR6511A4
9   chr16   16328976       16516974     NR_107060     MIR6770-2
10  chr16   16328976       16516974     NR_128713     MIR3670-4
11  chr20   14452377       14554567     NM_080676       MACROD2
12  chr20   14452377       14554567     NR_104193   MACROD2-IT1
13   chr9   41917455       42278270     NR_003670        FGF7P3
14   chr9   41917455       42278270     NR_015363         GLIDR
17   chr9   41917455       42278270     NR_126048  LOC102724238
18   chr9   41917455       42278270     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144055401      145613087  NM_001002810       PDE4DIP
3    chr1  144055401      145613087  NM_001012758        NUDT17
4    chr1  144055401      145613087  NM_001039888      ANKRD34A
5    chr1  144055401      145613087  NM_001135789       PPIAL4C
6    chr1  144055401      145613087  NM_001184795        PEX11B
11   chr1  144055401      145613087  NM_001277444         NBPF9
12   chr1  144055401      145613087  NM_001278267        NBPF20
13   chr1  144055401      145613087  NM_001280799       ANKRD35
14   chr1  144055401      145613087  NM_001302371        NBPF10
15   chr1  144055401      145613087  NM_001303040        ITGA10
16   chr1  144055401      145613087  NM_001303456        POLR3C
17   chr1  144055401      145613087  NM_001313972         TXNIP
19   chr1  144055401      145613087     NM_004892        SEC22B
20   chr1  144055401      145613087     NM_005105         RBM8A
21   chr1  144055401      145613087     NM_006099         PIAS3
24   chr1  144055401      145613087     NM_014455        RNF115
26   chr1  144055401      145613087     NM_032305       POLR3GL
27   chr1  144055401      145613087     NM_145277          HFE2
28   chr1  144055401      145613087     NM_153713         LIX1L
29   chr1  144055401      145613087     NM_203458      NOTCH2NL
30   chr1  144055401      145613087     NR_002328        GNRHR2
31   chr1  144055401      145613087     NR_003242        PFN1P2
32   chr1  144055401      145613087     NR_024511     LINC00623
35   chr1  144055401      145613087     NR_102405         NBPF8
38   chr1  144055401      145613087     NR_104217       NBPF25P
39   chr1  144055401      145613087     NR_106794       MIR6736
40   chr1  144055401      145613087     NR_111953     LINC00869
41   chr1  144055401      145613087     NR_125967  LOC101928979
42  chr10   67853917       68045871  NM_001127384        CTNNA3
44  chr12   72671973       72781281     NM_013381         TRHDE
45  chr15   28648801       29142009  NM_001282468       GOLGA8M
46  chr15   28648801       29142009     NR_026589       WHAMMP2
47  chr15   28648801       29142009     NR_033351       GOLGA8F
48  chr15   28648801       29142009     NR_033353       GOLGA8G
49  chr15   28648801       29142009     NR_036443       HERC2P9
50  chr15   28648801       29142009     NR_036475  LOC100289656
51  chr15   28648801       29142009     NR_037599     PDCD6IPP2
52  chr15   28648801       29142009     NR_039734     MIR4509-3
54  chr15   28648801       29142009     NR_047567     GOLGA6L7P
55  chr16   14730580       15006459  NM_001277323        NPIPA3
57  chr16   14730580       15006459  NM_001277324        NPIPA2
59  chr16   14730580       15006459     NM_014287         NOMO1
60  chr16   14730580       15006459     NM_016561          BFAR
61  chr16   14730580       15006459     NR_023387       ABCC6P2
62  chr16   14730580       15006459     NR_036140     MIR3179-1
63  chr16   14730580       15006459     NR_036141     MIR3180-1
64  chr16   14730580       15006459     NR_036142     MIR3180-2
65  chr16   14730580       15006459     NR_128713     MIR3670-4
66  chr16   14730580       15006459     NR_133651       PLA2G10
67   chr6   45087775       45231777  NM_001261823        SUPT3H
68   chr6   45087775       45231777     NR_030313        MIR586,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr14   21866772       21984779  NM_001163380           RAB2B
1   chr14   21866772       21984779  NM_001170629            CHD8
2   chr14   21866772       21984779  NM_001303523            TOX4
3   chr14   21866772       21984779     NM_019852          METTL3
6   chr15   28438881       28709832     NM_004667           HERC2
7   chr15   28438881       28709832     NR_033351         GOLGA8F
8   chr15   28438881       28709832     NR_033353         GOLGA8G
9   chr15   28438881       28709832     NR_039734       MIR4509-3
10  chr15   43993326       44116668  NM_001018108           SERF2
14  chr15   43993326       44116668  NM_001199885            HYPK
15  chr15   43993326       44116668  NM_001258031         SERINC4
16  chr15   43993326       44116668     NM_005313           PDIA3
17  chr15   43993326       44116668     NM_005926           MFAP1
18  chr15   43993326       44116668     NM_025165            ELL3
19  chr15   43993326       44116668     NR_002318      CATSPER2P1
20  chr15   43993326       44116668     NR_031695         MIR1282
21  chr15   43993326       44116668     NR_037673  SERF2-C15ORF63,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143674164      144512257  NM_001123068       PPIAL4G
1    chr1  143674164      144512257  NM_001135789       PPIAL4C
2    chr1  143674164      144512257  NM_001278267        NBPF20
3    chr1  143674164      144512257  NM_001287385        FAM72C
4    chr1  143674164      144512257  NM_001345942        FAM72D
8    chr1  143674164      144512257     NR_024511     LINC00623
10   chr1  143674164      144512257     NR_104014     LINC01138
11   chr1  143674164      144512257     NR_111930  LOC100132057
12   chr1  143674164      144512257     NR_111953     LINC00869
14  chr11   81833086       81939462     NR_120571     MIR4300HG
15  chr15   30238757       31049038  NM_001039841     ARHGAP11B
16  chr15   30238757       31049038  NM_001282472       GOLGA8J
17  chr15   30238757       31049038  NM_001282484       GOLGA8R
18  chr15   30238757       31049038  NM_001282490       GOLGA8H
19  chr15   30238757       31049038  NM_001301025          TJP1
20  chr15   30238757       31049038     NM_139320      CHRFAM7A
21  chr15   30238757       31049038     NR_026771  DKFZP434L187
22  chr15   30238757       31049038     NR_026858        ULK4P1
23  chr15   30238757       31049038     NR_026859        ULK4P3
24  chr15   30238757       31049038     NR_033933       GOLGA8T
25  chr15   30238757       31049038     NR_038253  LOC100288637
27  chr20   21936835       23254634     NM_000361          THBD
28  chr20   21936835       23254634     NM_001052         SSTR4
29  chr20   21936835       23254634     NM_012072          CD93
30  chr20   21936835       23254634     NM_021784         FOXA2
32  chr20   21936835       23254634     NR_001558     LINC00261
33  chr20   21936835       23254634     NR_027089     LOC284788
35  chr20   21936835       23254634     NR_034149     LINC00656
36  chr20   21936835       23254634     NR_038394     LINC01432
37  chr20   21936835       23254634     NR_109883     LINC01384
38  chr20   21936835       23254634     NR_110615     LINC01427,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21819249       22549445  NM_001001912      OR4E2
1   chr14   21819249       22549445  NM_001005465     OR10G3
2   chr14   21819249       22549445  NM_001005466     OR10G2
3   chr14   21819249       22549445  NM_001163380      RAB2B
4   chr14   21819249       22549445  NM_001170629       CHD8
5   chr14   21819249       22549445  NM_001303523       TOX4
6   chr14   21819249       22549445  NM_001317107      OR4E1
7   chr14   21819249       22549445     NM_007192    SUPT16H
8   chr14   21819249       22549445     NM_019852     METTL3
9   chr14   21819249       22549445     NM_020366    RPGRIP1
12  chr14   21819249       22549445     NR_002916     SNORD8
13  chr14   21819249       22549445     NR_003029     SNORD9
14  chr14   21819249       22549445     NR_111966      SALL2
16  chr19   34681513       34881821  NM_001289789        GPI
19  chr19   34681513       34881821     NM_014686   KIAA0355
20  chr19   34681513       34881821     NM_015578     LSM14A
21   chr2   50806050       50977660  NM_001330082      NRXN1
22   chr2   50806050       50977660     NR_130470    MIR8485
23   chr3   72714005       72829216     NM_018130       SHQ1
24   chr8     139705         314429  NM_001042415     ZNF596
29   chr8     139705         314429     NR_003572  RPL23AP53
30   chr9   41522166       41630367     NR_003528    ZNF658B,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0   chr1  242715646      243428951  NM_006642    SDCCAG8
1   chr1  242715646      243428951  NM_014812     CEP170
2   chr1  242715646      243428951  NR_029401  LINC01347
3  chr22   17235171       17358295  NM_175878       XKR3
4  chr22   17235171       17358295  NR_003607    HSFY1P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21795876       21908336  NM_001170629          CHD8
1   chr14   21795876       21908336     NM_007192       SUPT16H
2   chr14   21795876       21908336     NM_020366       RPGRIP1
4   chr14   21795876       21908336     NR_002916        SNORD8
5   chr14   21795876       21908336     NR_003029        SNORD9
6   chr19    1764560        1866175  NM_001080488       ONECUT3
7   chr19    1764560        1866175  NM_001178002        ATP8B3
8   chr19    1764560        1866175     NM_020695         REXO1
9   chr19    1764560        1866175     NM_031918         KLF16
11  chr19    1764560        1866175     NR_031730       MIR1909
12  chr19    1764560        1866175     NR_034114  LOC100288123,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143740360      143900628  NM_001123068       PPIAL4G
1    chr1  143740360      143900628  NM_001287385        FAM72C
2    chr1  143740360      143900628  NM_001345942        FAM72D
5    chr1  143740360      143900628     NR_104014     LINC01138
7   chr14   21774557       21895981  NM_001170629          CHD8
8   chr14   21774557       21895981     NM_007192       SUPT16H
9   chr14   21774557       21895981     NM_020366       RPGRIP1
11  chr14   21774557       21895981     NR_002916        SNORD8
12  chr14   21774557       21895981     NR_003029        SNORD9
13  chr16   21382756       21736678  NM_001077180        METTL9
14  chr16   21382756       21736678  NM_001161683          OTOA
16  chr16   21382756       21736678     NM_005849         IGSF6
17  chr16   21382756       21736678     NM_130464        NPIPB3
20  chr16   21382756       21736678     NR_002594      SLC7A5P2
21  chr16   21382756       21736678     NR_024456  LOC100190986
22  chr16   21382756       21736678     NR_027155        SMG1P3
23  chr16   21382756       21736678     NR_045011       SNX29P1
24  chr16   21382756       21736678     NR_049833     MIR3680-2
25  chr16   21382756       21736678     NR_110930  LOC101927814,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21910560       22035348  NM_001163380         RAB2B
1   chr14   21910560       22035348  NM_001303523          TOX4
2   chr14   21910560       22035348     NM_019852        METTL3
4   chr14   21910560       22035348     NR_111966         SALL2
6   chr21   44863557       44965370     NM_007031        HSF2BP
7   chr21   44863557       44965370     NR_026863     LINC00313
8   chr21   44863557       44965370     NR_026960     LINC00319
9   chr21   44863557       44965370     NR_136540  LOC102724354
10   chr4    9029067       11945528     NM_000798          DRD5
11   chr4    9029067       11945528  NM_001001290        SLC2A9
12   chr4    9029067       11945528  NM_001040448       DEFB131
13   chr4    9029067       11945528  NM_001242326      USP17L25
21   chr4    9029067       11945528  NM_001256852      USP17L10
22   chr4    9029067       11945528  NM_001256853      USP17L12
24   chr4    9029067       11945528  NM_001256854      USP17L11
27   chr4    9029067       11945528  NM_001256855      USP17L13
28   chr4    9029067       11945528  NM_001256857      USP17L17
29   chr4    9029067       11945528  NM_001256860      USP17L19
30   chr4    9029067       11945528  NM_001256861      USP17L20
31   chr4    9029067       11945528  NM_001256894      USP17L15
32   chr4    9029067       11945528     NM_005112          WDR1
33   chr4    9029067       11945528     NM_005114        HS3ST1
35   chr4    9029067       11945528     NM_052964          CLNK
36   chr4    9029067       11945528     NM_053042       ZNF518B
37   chr4    9029067       11945528     NR_027279      USP17L6P
38   chr4    9029067       11945528     NR_030298        MIR572
39   chr4    9029067       11945528     NR_031688      MIR548I2
40   chr4    9029067       11945528     NR_036090       MIR3138
41   chr4    9029067       11945528     NR_046416      USP17L9P
42   chr5   17572754       18162159     NR_134286     LOC646241
44   chr7    3322975        3425440     NM_152744          SDK1
45   chr8    3633692        3787937     NM_033225         CSMD1
46   chr9     536501        1077546  NM_001130865         DMRT2
47   chr9     536501        1077546  NM_001256876         KANK1
50   chr9     536501        1077546     NM_021240         DMRT3
51   chr9     536501        1077546     NM_021951         DMRT1
54   chr9     536501        1077546     NR_110643     LINC01230,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   22430647       23097088     NR_047040     LINC00424
1   chr13   22430647       23097088     NR_103810     LINC00540
2    chr2   51977321       52180713     NR_135237     LOC730100
3    chr2   97517860       97768187  NM_001122646       FAM178B
5    chr2   97517860       97768187  NM_001320849        FAHD2B
6    chr2   97517860       97768187     NM_016466       ANKRD39
8    chr2   97517860       97768187     NM_017789        SEMA4C
10   chr2   97517860       97768187     NR_110209  LOC101927053
11   chr6  145825438      146011362     NM_005670         EPM2A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4254164        5131619  NM_001001916        OR52J3
1   chr11    4254164        5131619  NM_001004137        OR52M1
2   chr11    4254164        5131619  NM_001004748        OR51A2
3   chr11    4254164        5131619  NM_001004749        OR51A7
4   chr11    4254164        5131619  NM_001004751        OR51D1
5   chr11    4254164        5131619  NM_001004752        OR51F1
6   chr11    4254164        5131619  NM_001004753        OR51F2
7   chr11    4254164        5131619  NM_001004755        OR51L1
8   chr11    4254164        5131619  NM_001004758        OR51S1
9   chr11    4254164        5131619  NM_001004759        OR51T1
10  chr11    4254164        5131619  NM_001005161        OR52B4
11  chr11    4254164        5131619  NM_001005164        OR52E2
12  chr11    4254164        5131619  NM_001005169        OR52I1
13  chr11    4254164        5131619  NM_001005170        OR52I2
14  chr11    4254164        5131619  NM_001005171        OR52K1
15  chr11    4254164        5131619  NM_001005172        OR52K2
16  chr11    4254164        5131619  NM_001005177        OR52R1
17  chr11    4254164        5131619  NM_001005237        OR51G1
18  chr11    4254164        5131619  NM_001005238        OR51G2
19  chr11    4254164        5131619  NM_001005329        OR51A4
20  chr11    4254164        5131619     NM_003141        TRIM21
21  chr11    4254164        5131619     NM_018073        TRIM68
22  chr11    4254164        5131619     NM_021801         MMP26
23  chr11    4254164        5131619     NM_030774        OR51E2
24  chr11    4254164        5131619     NM_144663      C11orf40
25  chr11    4254164        5131619     NM_152430        OR51E1
26  chr11   48366652       49550467  NM_001005512        OR4A47
27  chr11   48366652       49550467  NM_001005513        OR4C45
28  chr11   48366652       49550467  NM_001193472         FOLH1
29  chr11   48366652       49550467  NM_001206626       TRIM49B
..    ...        ...            ...           ...           ...
46  chr13  113045814      114062151  NM_001304433  LOC101928841
52  chr13  113045814      114062151     NM_003891          PROZ
53  chr13  113045814      114062151     NM_005561         LAMP1
55  chr13  113045814      114062151     NM_015205        ATP11A
56  chr13  113045814      114062151     NM_145248        SPACA7
57  chr13  113045814      114062151     NM_207440      ATP11AUN
58  chr13  113045814      114062151     NR_034002     MCF2L-AS1
59  chr13  113045814      114062151     NR_046541     GRTP1-AS1
60  chr13  113045814      114062151     NR_046661    ATP11A-AS1
61  chr13  113045814      114062151     NR_107042       MIR8075
63  chr13  113045814      114062151     NR_126424       F10-AS1
64  chr16   18459204       18560248  NM_001004060         NOMO2
65  chr16   18459204       18560248     NR_036140     MIR3179-1
66  chr16   18459204       18560248     NR_036142     MIR3180-2
67  chr16   18459204       18560248     NR_036144     MIR3180-3
68  chr16   18459204       18560248     NR_037442     MIR3670-1
69  chr16   18459204       18560248     NR_107060     MIR6770-2
70   chr3    3996125        5575124  NM_001164675         SUMF1
71   chr3    3996125        5575124  NM_001168272         ITPR1
72   chr3    3996125        5575124  NM_001243723        SETMAR
74   chr3    3996125        5575124     NM_003670       BHLHE40
75   chr3    3996125        5575124     NM_014674         EDEM1
76   chr3    3996125        5575124     NM_018184         ARL8B
77   chr3    3996125        5575124     NR_004428          EGOT
78   chr3    3996125        5575124     NR_037903   BHLHE40-AS1
79   chr3    3996125        5575124     NR_039953       MIR4790
80   chr3    3996125        5575124     NR_108075     ITPR1-AS1
82   chr9   39126591       39377179  NM_001085452     SPATA31A1
83   chr9   39126591       39377179     NM_033655       CNTNAP3
84   chr9   39126591       39377179     NR_026803       FAM74A1

[72 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16394321       16505831  NM_001282511        NPIPA8
1   chr16   16394321       16505831     NR_036141     MIR3180-1
2   chr16   16394321       16505831     NR_036142     MIR3180-2
3   chr16   16394321       16505831     NR_036447        PKD1P1
4   chr16   16394321       16505831     NR_103772  LOC100288162
5   chr16   16394321       16505831     NR_106766     MIR6511A1
6   chr16   16394321       16505831     NR_106971     MIR6511A4
7   chr16   16394321       16505831     NR_107060     MIR6770-2
8   chr16   16394321       16505831     NR_128713     MIR3670-4
9   chr22   20148561       20257464     NM_023004         RTN4R
10  chr22   20148561       20257464     NR_026919     LINC00896
11  chr22   20148561       20257464     NR_031618       MIR1286
12  chr22   20148561       20257464     NR_038460     LOC284865,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81498062       81627245     NR_029407     LOC642361
1   chr10   81498062       81627245     NR_120611    NUTM2B-AS1
4   chr16   16413739       16586908  NM_001282511        NPIPA8
5   chr16   16413739       16586908     NR_036447        PKD1P1
6   chr16   16413739       16586908     NR_103772  LOC100288162
7   chr16   16413739       16586908     NR_106766     MIR6511A1
8   chr16   16413739       16586908     NR_106971     MIR6511A4
9   chr16   16413739       16586908     NR_107060     MIR6770-2
10   chr5   99403146       99807364     NR_027503  LOC100133050
11   chr9   11940653       13519652     NM_000550         TYRP1
12   chr9   11940653       13519652  NM_001261407          MPDZ
14   chr9   11940653       13519652     NM_203403       LURAP1L
15   chr9   11940653       13519652     NR_033863      FLJ41200
16   chr9   11940653       13519652     NR_125775   LURAP1L-AS1
17   chr9   11940653       13519652     NR_132976      SNORD137,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241661261      241877394     NM_000143            FH
1    chr1  241661261      241877394     NM_001821          CHML
2    chr1  241661261      241877394     NM_003679           KMO
3    chr1  241661261      241877394     NM_014322          OPN3
4    chr1  241661261      241877394     NM_144625         WDR64
5   chr14   21805481       21916859  NM_001170629          CHD8
6   chr14   21805481       21916859     NM_007192       SUPT16H
7   chr14   21805481       21916859     NM_020366       RPGRIP1
9   chr14   21805481       21916859     NR_002916        SNORD8
10  chr14   21805481       21916859     NR_003029        SNORD9
11  chr14   21927390       22138037  NM_001001912         OR4E2
12  chr14   21927390       22138037  NM_001005465        OR10G3
13  chr14   21927390       22138037  NM_001005466        OR10G2
14  chr14   21927390       22138037  NM_001163380         RAB2B
15  chr14   21927390       22138037  NM_001303523          TOX4
16  chr14   21927390       22138037     NM_019852        METTL3
18  chr14   21927390       22138037     NR_111966         SALL2
20   chr2  233007456      233320820  NM_001257281        DIS3L2
21   chr2  233007456      233320820     NM_001632          ALPP
22   chr2  233007456      233320820     NM_031313        ALPPL2
24   chr2  233007456      233320820     NR_028501       ECEL1P2
25  chr20   14613641       14879085     NM_080676       MACROD2
26  chr20   14613641       14879085     NR_037841   MACROD2-AS1
27   chr4  165964718      166230267  NM_001100389       TMEM192
28   chr4  165964718      166230267  NM_001161522         KLHL2
30   chr4  165964718      166230267     NR_026575          GK3P
31   chr9   67064769       67389305     NR_002817        AQP7P1
32   chr9   67064769       67389305     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11  131418463      131578833  NM_001048209       NTM
1   chr11  131418463      131578833     NR_126159   NTM-AS1
2   chr14   21917666       22021264  NM_001163380     RAB2B
3   chr14   21917666       22021264  NM_001303523      TOX4
4   chr14   21917666       22021264     NM_019852    METTL3
6   chr14   21917666       22021264     NR_111966     SALL2
8   chr22   19941288       20157284     NM_000754      COMT
11  chr22   19941288       20157284  NM_001190326     DGCR8
12  chr22   19941288       20157284  NM_001243537   CCDC188
13  chr22   19941288       20157284  NM_001278639    RANBP1
16  chr22   19941288       20157284  NM_001283116    TANGO2
19  chr22   19941288       20157284     NM_001670     ARVCF
21  chr22   19941288       20157284     NM_013373    ZDHHC8
22  chr22   19941288       20157284     NM_022727    TRMT2A
23  chr22   19941288       20157284     NR_029706    MIR185
24  chr22   19941288       20157284     NR_031706   MIR1306
25  chr22   19941288       20157284     NR_037412   MIR3618
26  chr22   19941288       20157284     NR_039918   MIR4761
27  chr22   19941288       20157284     NR_106874   MIR6816
28   chr7  110680348      110811836  NM_001099658     LRRN3
29   chr7  110680348      110811836  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21895318       22049328  NM_001005465       OR10G3
1   chr14   21895318       22049328  NM_001163380        RAB2B
2   chr14   21895318       22049328  NM_001170629         CHD8
3   chr14   21895318       22049328  NM_001303523         TOX4
4   chr14   21895318       22049328     NM_019852       METTL3
7   chr14   21895318       22049328     NR_111966        SALL2
9   chr14   38177330       38486965  NM_001310135         TTC6
10  chr14   38177330       38486965     NR_135286    LINC00517
11  chr20   14702604       14961749     NM_080676      MACROD2
12  chr20   14702604       14961749     NR_037841  MACROD2-AS1
14   chr3     859363        1122855     NR_110118    LINC01266,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10  128321801      128633114  NM_001290223     DOCK1
1   chr14   21719472       22212258  NM_001001912     OR4E2
2   chr14   21719472       22212258  NM_001005465    OR10G3
3   chr14   21719472       22212258  NM_001005466    OR10G2
4   chr14   21719472       22212258  NM_001163380     RAB2B
5   chr14   21719472       22212258  NM_001170629      CHD8
6   chr14   21719472       22212258  NM_001303523      TOX4
7   chr14   21719472       22212258  NM_001317107     OR4E1
8   chr14   21719472       22212258     NM_007192   SUPT16H
9   chr14   21719472       22212258     NM_019852    METTL3
10  chr14   21719472       22212258     NM_020366   RPGRIP1
12  chr14   21719472       22212258     NM_031314    HNRNPC
14  chr14   21719472       22212258     NR_002916    SNORD8
15  chr14   21719472       22212258     NR_003029    SNORD9
16  chr14   21719472       22212258     NR_111966     SALL2
18  chr14   21786683       22050175  NM_001005465    OR10G3
19  chr14   21786683       22050175  NM_001163380     RAB2B
20  chr14   21786683       22050175  NM_001170629      CHD8
21  chr14   21786683       22050175  NM_001303523      TOX4
22  chr14   21786683       22050175     NM_007192   SUPT16H
23  chr14   21786683       22050175     NM_019852    METTL3
24  chr14   21786683       22050175     NM_020366   RPGRIP1
27  chr14   21786683       22050175     NR_002916    SNORD8
28  chr14   21786683       22050175     NR_003029    SNORD9
29  chr14   21786683       22050175     NR_111966     SALL2
31  chr14   21910980       22352410  NM_001001912     OR4E2
32  chr14   21910980       22352410  NM_001005465    OR10G3
33  chr14   21910980       22352410  NM_001005466    OR10G2
34  chr14   21910980       22352410  NM_001163380     RAB2B
35  chr14   21910980       22352410  NM_001303523      TOX4
36  chr14   21910980       22352410  NM_001317107     OR4E1
37  chr14   21910980       22352410     NM_019852    METTL3
39  chr14   21910980       22352410     NR_111966     SALL2
41  chr22   19945426       20082813     NM_000754      COMT
44  chr22   19945426       20082813  NM_001190326     DGCR8
45  chr22   19945426       20082813  NM_001283116    TANGO2
48  chr22   19945426       20082813     NM_001670     ARVCF
50  chr22   19945426       20082813     NR_029706    MIR185
51  chr22   19945426       20082813     NR_031706   MIR1306
52  chr22   19945426       20082813     NR_037412   MIR3618
53  chr22   19945426       20082813     NR_039918   MIR4761
54   chr5   59606927       59771292  NM_001165899     PDE4D,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr11   48368498       48612916  NM_001005512       OR4A47
1  chr11   48368498       48612916  NM_001005513       OR4C45
2  chr20   14636523       14867415     NM_080676      MACROD2
3  chr20   14636523       14867415     NR_037841  MACROD2-AS1
4   chr3   80841444       81140045     NR_132411    LOC728290,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  187246399      187435017     NR_126347  LINC01036
1   chr1  187246399      187435017     NR_132374  LINC01037
2  chr14   21764830       21869281  NM_001170629       CHD8
3  chr14   21764830       21869281     NM_007192    SUPT16H
4  chr14   21764830       21869281     NM_020366    RPGRIP1
6  chr14   21764830       21869281     NR_002916     SNORD8
7  chr14   21764830       21869281     NR_003029     SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   31451427       31584255     NM_032849         MEDAG
1   chr13   31451427       31584255     NM_152325         TEX26
2   chr13   31451427       31584255     NR_038287     TEX26-AS1
4   chr13   31451427       31584255     NR_103813     LINC00545
5   chr15   28688526       29266427  NM_001130414         APBA2
6   chr15   28688526       29266427  NM_001282468       GOLGA8M
7   chr15   28688526       29266427     NR_026589       WHAMMP2
8   chr15   28688526       29266427     NR_033351       GOLGA8F
9   chr15   28688526       29266427     NR_033353       GOLGA8G
10  chr15   28688526       29266427     NR_036443       HERC2P9
11  chr15   28688526       29266427     NR_036475  LOC100289656
12  chr15   28688526       29266427     NR_037599     PDCD6IPP2
13  chr15   28688526       29266427     NR_039734     MIR4509-3
14  chr15   28688526       29266427     NR_047567     GOLGA6L7P
15  chr21   40087147       40195498  NM_001256295          ETS2
17  chr21   40087147       40195498     NR_027065     LINC00114
20   chr8   16438020       17109549  NM_001145152        VPS37A
21   chr8   16438020       17109549  NM_001322087         CNOT7
26   chr8   16438020       17109549     NM_016353        ZDHHC2
27   chr8   16438020       17109549     NM_019851         FGF20
28   chr8   16438020       17109549     NM_181723         MICU3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   41345013       41606611  NM_001145353          ELF1
1   chr13   41345013       41606611     NM_005830        MRPS31
2   chr13   41345013       41606611     NM_014252      SLC25A15
4   chr13   41345013       41606611     NR_003365       SUGT1P3
5   chr13   41345013       41606611     NR_030352        MIR621
6   chr13   41345013       41606611     NR_038259       TPTE2P5
7   chr14   21761132       21908952  NM_001170629          CHD8
8   chr14   21761132       21908952     NM_007192       SUPT16H
9   chr14   21761132       21908952     NM_020366       RPGRIP1
11  chr14   21761132       21908952     NR_002916        SNORD8
12  chr14   21761132       21908952     NR_003029        SNORD9
13   chr2  133612526      133763502     NM_207363        NCKAP5
14   chr2  133612526      133763502     NR_135572  LOC101928185
15   chr4    9095971        9257749  NM_001256852      USP17L10
16   chr4    9095971        9257749  NM_001256853      USP17L12
17   chr4    9095971        9257749  NM_001256854      USP17L11
19   chr4    9095971        9257749  NM_001256855      USP17L13
20   chr4    9095971        9257749  NM_001256857      USP17L17
21   chr4    9095971        9257749  NM_001256860      USP17L19
22   chr4    9095971        9257749  NM_001256894      USP17L15,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   21061578       21195378  NM_001277303        POTEB2
1   chr15   21061578       21195378     NM_207355        POTEB3
2   chr15   21061578       21195378     NR_028506         NF1P2
3   chr15   21061578       21195378     NR_040094     LINC01193
4   chr15   21061578       21195378     NR_049895     MIR5701-2
6    chr2  186518100      186748879     NM_173651         FSIP2
7    chr2  186518100      186748879     NR_110214  LOC101927196
10   chr2  186518100      186748879     NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21748562       21892932  NM_001170629          CHD8
1   chr14   21748562       21892932     NM_007192       SUPT16H
2   chr14   21748562       21892932     NM_020366       RPGRIP1
4   chr14   21748562       21892932     NR_002916        SNORD8
5   chr14   21748562       21892932     NR_003029        SNORD9
6    chr2  186932028      187060017     NR_110218     LINC01473
7   chr20   14744399       16342407  NM_001033087       MACROD2
8   chr20   14744399       16342407     NM_024704        KIF16B
10  chr20   14744399       16342407     NR_037841   MACROD2-AS1
12  chr20   14744399       16342407     NR_130924     LOC613266
14   chr9   44306618       44412460     NR_121564  LOC101927827
15   chr9   44306618       44412460     NR_126050  LOC103908605,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   21834485       21952341  NM_001163380      RAB2B
1  chr14   21834485       21952341  NM_001170629       CHD8
2  chr14   21834485       21952341  NM_001303523       TOX4
3  chr14   21834485       21952341     NM_007192    SUPT16H
6  chr14   21834485       21952341     NR_002916     SNORD8
7  chr14   21834485       21952341     NR_003029     SNORD9
8  chr19   21856718       21977663     NM_173531     ZNF100
9  chr19   21856718       21977663     NR_024523  LOC641367,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21840099       22059323  NM_001005465     OR10G3
1   chr14   21840099       22059323  NM_001163380      RAB2B
2   chr14   21840099       22059323  NM_001170629       CHD8
3   chr14   21840099       22059323  NM_001303523       TOX4
4   chr14   21840099       22059323     NM_007192    SUPT16H
5   chr14   21840099       22059323     NM_019852     METTL3
8   chr14   21840099       22059323     NR_002916     SNORD8
9   chr14   21840099       22059323     NR_003029     SNORD9
10  chr14   21840099       22059323     NR_111966      SALL2
12  chr16   83975428       84155156  NM_001080442    SLC38A8
13  chr16   83975428       84155156     NM_003791     MBTPS1
14  chr16   83975428       84155156     NM_019065     NECAB2
15  chr16   83975428       84155156     NM_182981     OSGIN1
16   chr4  167636539      168190435  NM_001204353     SPOCK3
19   chr7   62945036       63134024     NR_036246  MIR4283-1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   63465616       63604544  NM_001144936      C11orf95
1   chr11   63465616       63604544  NM_001265591          RTN3
2   chr11   63465616       63604544     NM_138471      C11orf84
3   chr13   63050876       64256956     NR_047011     LINC00395
4   chr13   63050876       64256956     NR_047029     LINC00448
7   chr13   63050876       64256956     NR_126409     LINC00376
8   chr16   15404583       17001373  NM_001004067         NOMO3
9   chr16   15404583       17001373  NM_001040113         MYH11
10  chr16   15404583       17001373  NM_001079528         ABCC6
11  chr16   15404583       17001373  NM_001128423        MPV17L
12  chr16   15404583       17001373  NM_001142469      C16orf45
13  chr16   15404583       17001373  NM_001143979          NDE1
15  chr16   15404583       17001373  NM_001184998      KIAA0430
16  chr16   15404583       17001373  NM_001277325        NPIPA5
17  chr16   15404583       17001373  NM_001282511        NPIPA8
18  chr16   15404583       17001373     NM_004996         ABCC1
21  chr16   15404583       17001373     NR_030159        MIR484
22  chr16   15404583       17001373     NR_036140     MIR3179-1
23  chr16   15404583       17001373     NR_036141     MIR3180-1
24  chr16   15404583       17001373     NR_036142     MIR3180-2
25  chr16   15404583       17001373     NR_036447        PKD1P1
26  chr16   15404583       17001373     NR_103772  LOC100288162
27  chr16   15404583       17001373     NR_106761       MIR6506
28  chr16   15404583       17001373     NR_106766     MIR6511A1
29  chr16   15404583       17001373     NR_106971     MIR6511A4
30  chr16   15404583       17001373     NR_107060     MIR6770-2
31  chr16   15404583       17001373     NR_128713     MIR3670-4
32  chr16   15404583       17001373     NR_130755         FOPNL
33   chr6  131073910      131201136  NM_001135554       EPB41L2
34   chr6  131073910      131201136  NM_001195597         SMLR1
36   chr7  110601522      110750733  NM_001099658         LRRN3
37   chr7  110601522      110750733  NM_001244606        IMMP2L
39   chr9   17194413       17329733  NM_001114395         CNTLN
41   chr9   41891626       42095013     NR_003670        FGF7P3
42   chr9   41891626       42095013     NR_015363         GLIDR
45   chr9   41891626       42095013     NR_126048  LOC102724238
46   chr9   41891626       42095013     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   21154133       21388818     NR_040094     LINC01193
1   chr15   58826214       59042978     NM_000236          LIPC
2   chr15   58826214       59042978     NM_001110        ADAM10
3   chr15   58826214       59042978     NR_073415     HSP90AB4P
4   chr16   18176572       18497586  NM_001282511        NPIPA8
5   chr16   18176572       18497586     NR_036142     MIR3180-2
6   chr16   18176572       18497586     NR_036144     MIR3180-3
7   chr16   18176572       18497586     NR_103772  LOC100288162
8   chr16   18176572       18497586     NR_106971     MIR6511A4
9   chr16   18176572       18497586     NR_107060     MIR6770-2
10   chr2   97161071       97271045  NM_001115016        KANSL3
11   chr2   97161071       97271045  NM_001285485        NEURL3
12   chr2   97161071       97271045  NM_001319085        ARID5A
16   chr2   97161071       97271045     NR_135564  LOC105373496,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr13   63368926       63585059     NR_047029     LINC00448
3     chr2  130578838      130684757     NR_026740     LOC389033
4     chr2  130578838      130684757     NR_110285  LOC101927924
5     chr2  186046036      187432498     NM_018471        ZC3H15
6     chr2  186046036      187432498     NM_173651         FSIP2
7     chr2  186046036      187432498     NR_110214  LOC101927196
10    chr2  186046036      187432498     NR_110218     LINC01473
11    chr2  186046036      187432498     NR_144453     FSIP2-AS1
13   chr22   17211141       20738231     NM_000407         GP1BB
14   chr22   17211141       20738231     NM_000754          COMT
15   chr22   17211141       20738231  NM_001009939         SEPT5
16   chr22   17211141       20738231  NM_001035247         UFD1L
17   chr22   17211141       20738231  NM_001037814          GAB4
18   chr22   17211141       20738231  NM_001122731        MICAL3
19   chr22   17211141       20738231  NM_001127649         PEX26
23   chr22   17211141       20738231  NM_001163079         CECR6
24   chr22   17211141       20738231  NM_001166242      C22orf39
25   chr22   17211141       20738231  NM_001178010         CDC45
26   chr22   17211141       20738231  NM_001184781         DGCR2
27   chr22   17211141       20738231  NM_001190326         DGCR8
28   chr22   17211141       20738231  NM_001193414         TUBA8
29   chr22   17211141       20738231  NM_001195226         PRODH
31   chr22   17211141       20738231  NM_001242313      TMEM191B
32   chr22   17211141       20738231  NM_001243537       CCDC188
33   chr22   17211141       20738231  NM_001244567           BID
36   chr22   17211141       20738231  NM_001256534       SLC25A1
37   chr22   17211141       20738231  NM_001270733       BCL2L13
38   chr22   17211141       20738231  NM_001278639        RANBP1
41   chr22   17211141       20738231  NM_001282227         CECR1
43   chr22   17211141       20738231  NM_001282512        TXNRD2
..     ...        ...            ...           ...           ...
93   chr22   17211141       20738231     NR_024157        DGCR11
94   chr22   17211141       20738231     NR_024159         DGCR9
95   chr22   17211141       20738231     NR_024381     LINC00895
96   chr22   17211141       20738231     NR_024417      FLJ41941
97   chr22   17211141       20738231     NR_024482     CECR5-AS1
98   chr22   17211141       20738231     NR_026651        DGCR10
99   chr22   17211141       20738231     NR_026919     LINC00896
100  chr22   17211141       20738231     NR_029706        MIR185
101  chr22   17211141       20738231     NR_030378        MIR648
102  chr22   17211141       20738231     NR_031618       MIR1286
103  chr22   17211141       20738231     NR_031706       MIR1306
104  chr22   17211141       20738231     NR_036168     MIR3198-1
105  chr22   17211141       20738231     NR_037412       MIR3618
106  chr22   17211141       20738231     NR_037611   SEPT5-GP1BB
108  chr22   17211141       20738231     NR_038398         CECR3
109  chr22   17211141       20738231     NR_038460     LOC284865
110  chr22   17211141       20738231     NR_039918       MIR4761
112  chr22   17211141       20738231     NR_103718     LINC00528
113  chr22   17211141       20738231     NR_103767     LINC01311
114  chr22   17211141       20738231     NR_103793  LOC100996342
115  chr22   17211141       20738231     NR_106874       MIR6816
117  chr22   17211141       20738231     NR_134584  LOC101929350
118  chr22   17211141       20738231     NR_135922  LOC102725072
119  chr22   17211141       20738231     NR_136560       FAM230A
120  chr22   17211141       20738231     NR_136561     LOC642643
121  chr22   17211141       20738231     NR_136569     LOC729461
122  chr22   17211141       20738231     NR_136570  LOC100996415
123  chr22   17211141       20738231     NR_136571  LOC100996432
124  chr22   17211141       20738231     NR_136572  LOC101927859
125  chr22   17211141       20738231     NR_136574  LOC105379550

[91 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245038888      245342323  NM_001143943        EFCAB2
2    chr1  245038888      245342323     NM_018012        KIF26B
4    chr1  245038888      245342323     NR_111907  LOC101928068
5   chr12   85484179       85919305  NM_001079910        LRRIQ1
6   chr12   85484179       85919305     NM_006982          ALX1
7   chr14   21874176       22548020  NM_001001912         OR4E2
8   chr14   21874176       22548020  NM_001005465        OR10G3
9   chr14   21874176       22548020  NM_001005466        OR10G2
10  chr14   21874176       22548020  NM_001163380         RAB2B
11  chr14   21874176       22548020  NM_001170629          CHD8
12  chr14   21874176       22548020  NM_001303523          TOX4
13  chr14   21874176       22548020  NM_001317107         OR4E1
14  chr14   21874176       22548020     NM_019852        METTL3
17  chr14   21874176       22548020     NR_111966         SALL2
19   chr4  108619714      108847292  NM_001136258         SGMS2
20   chr4  108619714      108847292     NM_005443        PAPSS1
22   chr4  108619714      108847292     NR_125929  LOC101929595
23   chr4  165948830      166067079  NM_001100389       TMEM192
24   chr4  165948830      166067079     NM_152620        TRIM60
25   chr5   99305243      100324124     NM_005668       ST8SIA4
27   chr5   99305243      100324124     NM_198507       FAM174A
28   chr5   99305243      100324124     NR_027503  LOC100133050
29   chr5   99305243      100324124     NR_031686       MIR548P
30   chr8   58207936       58336927     NR_125818  LOC101929488,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21767967       21899973  NM_001170629          CHD8
1   chr14   21767967       21899973     NM_007192       SUPT16H
2   chr14   21767967       21899973     NM_020366       RPGRIP1
4   chr14   21767967       21899973     NR_002916        SNORD8
5   chr14   21767967       21899973     NR_003029        SNORD9
6   chr15   60001051       63435218  NM_001007595        C2CD4B
7   chr15   60001051       63435218  NM_001018008          TPM1
9   chr15   60001051       63435218  NM_001018088        VPS13C
10  chr15   60001051       63435218  NM_001018089          ICE2
16  chr15   60001051       63435218     NM_004039         ANXA2
17  chr15   60001051       63435218     NM_012182         FOXB1
18  chr15   60001051       63435218     NM_015059          TLN2
20  chr15   60001051       63435218     NM_032857         LACTB
21  chr15   60001051       63435218     NM_134260          RORA
25  chr15   60001051       63435218     NM_207322        C2CD4A
26  chr15   60001051       63435218     NR_026897      MGC15885
27  chr15   60001051       63435218     NR_029709       MIR190A
28  chr15   60001051       63435218     NR_106733       MIR6085
29  chr15   60001051       63435218     NR_107034       MIR8067
30  chr15   60001051       63435218     NR_120318      RORA-AS2
31  chr15   60001051       63435218     NR_120339      RORA-AS1
34  chr15   60001051       63435218     NR_135690  LOC101928907
35  chr15   60001051       63435218     NR_136885     GOLGA2P11
36  chr16   68621017       68732696  NM_001317195          CDH3
37   chr2   39675710       39871977     NR_037875     LOC728730
38   chr2   51253972       51390762  NM_001330079         NRXN1
41   chr2   51253972       51390762     NR_135237     LOC730100
42   chr4   88599499       89329695     NM_000297          PKD2
43   chr4   88599499       89329695     NM_000582          SPP1
44   chr4   88599499       89329695  NM_001184694          MEPE
45   chr4   88599499       89329695  NM_001257386         ABCG2
48   chr4   88599499       89329695     NM_004967          IBSP
49   chr4   88599499       89329695     NM_017912         HERC6
51   chr4   88599499       89329695     NM_152542         PPM1K
52   chr4   88599499       89329695     NR_134237  LOC105369192
54   chr5   99342660       99913954     NM_198507       FAM174A
55   chr5   99342660       99913954     NR_027503  LOC100133050,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143712370      143953388  NM_001123068       PPIAL4G
1    chr1  143712370      143953388  NM_001287385        FAM72C
2    chr1  143712370      143953388  NM_001345942        FAM72D
6    chr1  143712370      143953388     NR_104014     LINC01138
7    chr1  143712370      143953388     NR_111930  LOC100132057
9    chr1  244985472      245164358  NM_001143943        EFCAB2
11   chr1  244985472      245164358  NM_001312871         COX20
13   chr1  244985472      245164358     NM_004501        HNRNPU
16   chr1  244985472      245164358     NR_111907  LOC101928068
17   chr1  244985472      245164358     NR_132782      SNORA100
18  chr11  134273374      134446478     NM_054025        B3GAT1
19  chr11  134273374      134446478     NR_033852     LOC283177
20  chr14   42092115       42234119  NM_001346175         LRFN5
21   chr6  162601331      162716926     NM_013988         PARK2
22   chr9   39105019       39362464  NM_001085452     SPATA31A1
23   chr9   39105019       39362464     NM_033655       CNTNAP3
24   chr9  102035224      102135360     NR_102270          NAMA,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11  134170676      134343290  NM_001080407       GLB1L3
1   chr11  134170676      134343290     NM_054025       B3GAT1
2   chr11  134170676      134343290     NM_138342       GLB1L2
3   chr11  134170676      134343290     NR_033852    LOC283177
4   chr14   21705462       21808397     NM_020366      RPGRIP1
5   chr14   21705462       21808397     NM_031314       HNRNPC
6   chr20   14735665       14929118     NM_080676      MACROD2
7   chr20   14735665       14929118     NR_037841  MACROD2-AS1
9    chr4  121602168      121830274     NM_018699        PRDM5
10   chr6  162492926      162660432     NM_013988        PARK2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr20   14761527       14930612     NM_080676       MACROD2
1  chr20   14761527       14930612     NR_037841   MACROD2-AS1
3  chr22   17192116       17311826     NM_175878          XKR3
4  chr22   17192116       17311826     NR_003607       HSFY1P1
5  chr22   17192116       17311826     NR_134584  LOC101929350
6   chr3  155602595      155705520     NM_003875          GMPS
7   chr8    8158750        8593373  NM_001080826         PRAG1
8   chr8    8158750        8593373     NM_194284        CLDN23,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   82375498       82721672  NM_001297704     ADGRL2
2   chr14   21870768       22084231  NM_001005465     OR10G3
3   chr14   21870768       22084231  NM_001163380      RAB2B
4   chr14   21870768       22084231  NM_001170629       CHD8
5   chr14   21870768       22084231  NM_001303523       TOX4
6   chr14   21870768       22084231     NM_019852     METTL3
9   chr14   21870768       22084231     NR_111966      SALL2
11   chr4   66425942       66538062  NM_001281766      EPHA5
14   chr4   66425942       66538062     NR_034138  EPHA5-AS1
15   chr7  110793749      111448352  NM_001244606     IMMP2L
16   chr7  110793749      111448352     NM_014705      DOCK4,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1   12825874       12966923  NM_001009611      PRAMEF4
1    chr1   12825874       12966923  NM_001013631     HNRNPCL1
2    chr1   12825874       12966923  NM_001080830     PRAMEF12
3    chr1   12825874       12966923  NM_001146181     HNRNPCL3
4    chr1   12825874       12966923  NM_001146344     PRAMEF11
5    chr1   12825874       12966923  NM_001294139      PRAMEF1
6    chr1   12825874       12966923  NM_001302551     HNRNPCL4
8    chr1   12825874       12966923     NM_023014      PRAMEF2
9    chr1   59099376       59234001  NM_001085487        MYSM1
10   chr2   34239700       34360645     NR_126403    LINC01317
11   chr2   34239700       34360645     NR_132381    LINC01318
12  chr20   14703822       15002423     NM_080676      MACROD2
13  chr20   14703822       15002423     NR_037841  MACROD2-AS1
15  chr22   19920966       20057250     NM_000754         COMT
18  chr22   19920966       20057250  NM_001282512       TXNRD2
19  chr22   19920966       20057250  NM_001283116       TANGO2
22  chr22   19920966       20057250     NM_001670        ARVCF
25  chr22   19920966       20057250     NR_029706       MIR185
26  chr22   19920966       20057250     NR_039918      MIR4761
27   chr7   64106618       64335837  NM_001160183       ZNF138
28   chr7   64106618       64335837  NM_001282360       ZNF107
31   chr7   64106618       64335837     NR_106898      MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  162825842      163019295     NM_178550   CCDC190
1   chr14   21740443       21990770  NM_001163380     RAB2B
2   chr14   21740443       21990770  NM_001170629      CHD8
3   chr14   21740443       21990770  NM_001303523      TOX4
4   chr14   21740443       21990770     NM_007192   SUPT16H
5   chr14   21740443       21990770     NM_019852    METTL3
6   chr14   21740443       21990770     NM_020366   RPGRIP1
9   chr14   21740443       21990770     NR_002916    SNORD8
10  chr14   21740443       21990770     NR_003029    SNORD9
11  chr14   21740443       21990770     NR_111966     SALL2
13   chr7   85994152       86497205     NM_000840      GRM3
14   chr9  119689917      119863564     NM_014010     ASTN2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   31233170       31462389  NM_001304274        IMMP1L
1   chr11   31233170       31462389     NM_181706       DNAJC24
2   chr11   31233170       31462389     NM_181807         DCDC1
3   chr14   21761270       22842429  NM_001001912         OR4E2
4   chr14   21761270       22842429  NM_001005465        OR10G3
5   chr14   21761270       22842429  NM_001005466        OR10G2
6   chr14   21761270       22842429  NM_001163380         RAB2B
7   chr14   21761270       22842429  NM_001170629          CHD8
8   chr14   21761270       22842429  NM_001303523          TOX4
9   chr14   21761270       22842429  NM_001317107         OR4E1
10  chr14   21761270       22842429     NM_007192       SUPT16H
11  chr14   21761270       22842429     NM_019852        METTL3
12  chr14   21761270       22842429     NM_020366       RPGRIP1
15  chr14   21761270       22842429     NR_002916        SNORD8
16  chr14   21761270       22842429     NR_003029        SNORD9
17  chr14   21761270       22842429     NR_111966         SALL2
19  chr15   30316400       30911867  NM_001282472       GOLGA8J
20  chr15   30316400       30911867  NM_001282484       GOLGA8R
21  chr15   30316400       30911867  NM_001282490       GOLGA8H
22  chr15   30316400       30911867     NM_139320      CHRFAM7A
23  chr15   30316400       30911867     NR_026771  DKFZP434L187
24  chr15   30316400       30911867     NR_026858        ULK4P1
25  chr15   30316400       30911867     NR_026859        ULK4P3
26  chr15   30316400       30911867     NR_033933       GOLGA8T
27   chr4  121683334      121809103     NM_018699         PRDM5
28   chr7   75889653       76294749  NM_001102594          DTX2
30   chr7   75889653       76294749  NM_001110199         SRRM3
31   chr7   75889653       76294749  NM_001110354           ZP3
32   chr7   75889653       76294749     NM_001540         HSPB1
34   chr7   75889653       76294749     NM_012479         YWHAG
35   chr7   75889653       76294749     NM_030570         UPK3B
36   chr7   75889653       76294749     NM_080744         SSC4D
37   chr7   75889653       76294749     NM_152992        POMZP3
38   chr7   75889653       76294749     NR_003262        FDPSP2
39   chr7   75889653       76294749     NR_029411  LOC100133091
40   chr7  110681694      111007353  NM_001099658         LRRN3
41   chr7  110681694      111007353  NM_001244606        IMMP2L
43   chr7  121466790      121605655  NM_001206838        PTPRZ1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143707267      144101213  NM_001123068       PPIAL4G
1    chr1  143707267      144101213  NM_001287385        FAM72C
2    chr1  143707267      144101213  NM_001345942        FAM72D
6    chr1  143707267      144101213     NR_104014     LINC01138
7    chr1  143707267      144101213     NR_111930  LOC100132057
9   chr10   19577439       19772999  NM_001142308        MALRD1
10  chr13   63112419       63683713     NR_047029     LINC00448
13  chr14   21939392       22139700  NM_001001912         OR4E2
14  chr14   21939392       22139700  NM_001005465        OR10G3
15  chr14   21939392       22139700  NM_001005466        OR10G2
16  chr14   21939392       22139700  NM_001163380         RAB2B
17  chr14   21939392       22139700  NM_001303523          TOX4
18  chr14   21939392       22139700  NM_001317107         OR4E1
19  chr14   21939392       22139700     NM_019852        METTL3
21  chr14   21939392       22139700     NR_111966         SALL2
23  chr20    2952327        3183219     NM_000490           AVP
24  chr20    2952327        3183219     NM_000915           OXT
25  chr20    2952327        3183219  NM_001267584         UBOX5
26  chr20    2952327        3183219  NM_001282533         LZTS3
27  chr20    2952327        3183219     NM_002836         PTPRA
28  chr20    2952327        3183219     NM_021826       FASTKD5
29  chr20    2952327        3183219     NM_023935        DDRGK1
30  chr20    2952327        3183219     NM_030811        MRPS26
33  chr20    2952327        3183219     NM_178332         GNRH2
34  chr20    2952327        3183219     NR_038395     UBOX5-AS1
35  chr21   28184738       28298191     NM_006988       ADAMTS1
36  chr21   28184738       28298191     NM_007038       ADAMTS5
37   chr5      68996         176273     NM_052909      PLEKHG4B
38   chr7   71423775       71755043  NM_001017440         CALN1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21939471       22153036  NM_001001912     OR4E2
1  chr14   21939471       22153036  NM_001005465    OR10G3
2  chr14   21939471       22153036  NM_001005466    OR10G2
3  chr14   21939471       22153036  NM_001163380     RAB2B
4  chr14   21939471       22153036  NM_001303523      TOX4
5  chr14   21939471       22153036  NM_001317107     OR4E1
6  chr14   21939471       22153036     NM_019852    METTL3
8  chr14   21939471       22153036     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11  104631514      104953789     NM_001225      CASP4
1   chr11  104631514      104953789  NM_001257119      CASP1
3   chr11  104631514      104953789     NM_052889     CARD16
4   chr11  104631514      104953789     NR_024239      CASP5
5   chr11  104631514      104953789     NR_034064     CASP12
6   chr11  104631514      104953789     NR_034078  LOC643733
7   chr11  104631514      104953789     NR_131905    CASP1P2
8   chr14   21825441       22128182  NM_001005465     OR10G3
9   chr14   21825441       22128182  NM_001005466     OR10G2
10  chr14   21825441       22128182  NM_001163380      RAB2B
11  chr14   21825441       22128182  NM_001170629       CHD8
12  chr14   21825441       22128182  NM_001303523       TOX4
13  chr14   21825441       22128182     NM_007192    SUPT16H
14  chr14   21825441       22128182     NM_019852     METTL3
17  chr14   21825441       22128182     NR_002916     SNORD8
18  chr14   21825441       22128182     NR_003029     SNORD9
19  chr14   21825441       22128182     NR_111966      SALL2
21   chr3    2235972        2377408  NM_001206955      CNTN4
23   chr5  152194344      152339236     NR_109877  LINC01470,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   30190756       30292486     NM_000510          FSHB
1   chr14   21847940       22296281  NM_001001912         OR4E2
2   chr14   21847940       22296281  NM_001005465        OR10G3
3   chr14   21847940       22296281  NM_001005466        OR10G2
4   chr14   21847940       22296281  NM_001163380         RAB2B
5   chr14   21847940       22296281  NM_001170629          CHD8
6   chr14   21847940       22296281  NM_001303523          TOX4
7   chr14   21847940       22296281  NM_001317107         OR4E1
8   chr14   21847940       22296281     NM_007192       SUPT16H
9   chr14   21847940       22296281     NM_019852        METTL3
12  chr14   21847940       22296281     NR_002916        SNORD8
13  chr14   21847940       22296281     NR_003029        SNORD9
14  chr14   21847940       22296281     NR_111966         SALL2
16  chr16   68553827       68656408  NM_001305204         ZFP90
18  chr17   14018194       14123091     NM_001303         COX10
19  chr20   14595634       14787064     NM_080676       MACROD2
20  chr20   14595634       14787064     NR_104193   MACROD2-IT1
21   chr4  125393696      126076467  NM_001167882       ANKRD50
23   chr4  125393696      126076467     NR_110838  LOC101927087,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  242757357      243444470     NM_006642       SDCCAG8
1    chr1  242757357      243444470     NM_014812        CEP170
2    chr1  242757357      243444470     NR_029401     LINC01347
3   chr10   67708522       69001175  NM_001127384        CTNNA3
6   chr10   67708522       69001175     NM_178011        LRRTM3
8   chr10   67708522       69001175     NR_111911  LOC101928961
9   chr12   80984104       81124138  NM_001145026         PTPRQ
10  chr12   80984104       81124138     NM_002469          MYF6
11  chr12   80984104       81124138     NM_005593          MYF5
12  chr18   24844846       25017507     NR_134589  LOC105372038
13  chr20   14747228       15018179     NM_080676       MACROD2
14  chr20   14747228       15018179     NR_037841   MACROD2-AS1
16  chr22   19879674       20130001     NM_000754          COMT
19  chr22   19879674       20130001  NM_001190326         DGCR8
20  chr22   19879674       20130001  NM_001278639        RANBP1
23  chr22   19879674       20130001  NM_001282512        TXNRD2
24  chr22   19879674       20130001  NM_001283116        TANGO2
27  chr22   19879674       20130001     NM_001670         ARVCF
30  chr22   19879674       20130001     NM_013373        ZDHHC8
31  chr22   19879674       20130001     NM_022727        TRMT2A
32  chr22   19879674       20130001     NR_029706        MIR185
33  chr22   19879674       20130001     NR_031706       MIR1306
34  chr22   19879674       20130001     NR_037412       MIR3618
35  chr22   19879674       20130001     NR_039918       MIR4761
36  chr22   19879674       20130001     NR_106874       MIR6816,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0    chr1  107995091      108312931  NM_001079874         VAV3
1    chr1  107995091      108312931  NM_001113228        NTNG1
5   chr14   21767069       21980721  NM_001163380        RAB2B
6   chr14   21767069       21980721  NM_001170629         CHD8
7   chr14   21767069       21980721  NM_001303523         TOX4
8   chr14   21767069       21980721     NM_007192      SUPT16H
9   chr14   21767069       21980721     NM_019852       METTL3
10  chr14   21767069       21980721     NM_020366      RPGRIP1
13  chr14   21767069       21980721     NR_002916       SNORD8
14  chr14   21767069       21980721     NR_003029       SNORD9
15  chr15   53003069       53388058     NM_004498      ONECUT1
17  chr20   14891269       15019107     NM_080676      MACROD2
18  chr20   14891269       15019107     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21816683       22701520  NM_001001912     OR4E2
1   chr14   21816683       22701520  NM_001005465    OR10G3
2   chr14   21816683       22701520  NM_001005466    OR10G2
3   chr14   21816683       22701520  NM_001163380     RAB2B
4   chr14   21816683       22701520  NM_001170629      CHD8
5   chr14   21816683       22701520  NM_001303523      TOX4
6   chr14   21816683       22701520  NM_001317107     OR4E1
7   chr14   21816683       22701520     NM_007192   SUPT16H
8   chr14   21816683       22701520     NM_019852    METTL3
9   chr14   21816683       22701520     NM_020366   RPGRIP1
12  chr14   21816683       22701520     NR_002916    SNORD8
13  chr14   21816683       22701520     NR_003029    SNORD9
14  chr14   21816683       22701520     NR_111966     SALL2
16  chr16   78775777       79044992     NM_016373      WWOX
17   chr6  162818648      163000534     NM_013988     PARK2
18   chr7   64115690       64274390  NM_001160183    ZNF138
19   chr7   64115690       64274390  NM_001282360    ZNF107
22   chr7   64115690       64274390     NR_106898   MIR6839,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21797024       21943131  NM_001163380     RAB2B
1   chr14   21797024       21943131  NM_001170629      CHD8
2   chr14   21797024       21943131     NM_007192   SUPT16H
3   chr14   21797024       21943131     NM_020366   RPGRIP1
6   chr14   21797024       21943131     NR_002916    SNORD8
7   chr14   21797024       21943131     NR_003029    SNORD9
8    chr5     105683         415318  NM_001080478   LRRC14B
9    chr5     105683         415318  NM_001242412      AHRR
10   chr5     105683         415318     NM_004168      SDHA
11   chr5     105683         415318     NM_013232     PDCD6
12   chr5     105683         415318     NM_052909  PLEKHG4B
13   chr5     105683         415318     NM_145265   CCDC127
15   chr5     105683         415318     NR_104613     HRAT5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   16596438       16756706  NM_001114600         SZRD1
1    chr1   16596438       16756706     NM_018994        FBXO42
2    chr1   16596438       16756706     NM_198546       SPATA21
3   chr16   18111467       18538078  NM_001004060         NOMO2
4   chr16   18111467       18538078  NM_001282511        NPIPA8
5   chr16   18111467       18538078     NR_036140     MIR3179-1
6   chr16   18111467       18538078     NR_036142     MIR3180-2
7   chr16   18111467       18538078     NR_036144     MIR3180-3
8   chr16   18111467       18538078     NR_037442     MIR3670-1
9   chr16   18111467       18538078     NR_103772  LOC100288162
10  chr16   18111467       18538078     NR_106971     MIR6511A4
11  chr16   18111467       18538078     NR_107060     MIR6770-2
12   chr5   99772680       99877309     NM_198507       FAM174A,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18284411       18453509  NM_001282511        NPIPA8
1  chr16   18284411       18453509     NR_103772  LOC100288162
2  chr16   18284411       18453509     NR_106971     MIR6511A4
3   chr4  121690394      122409551  NM_001128843         TNIP3
5   chr4  121690394      122409551     NM_018699         PRDM5
6   chr4  121690394      122409551     NM_024574          NDNF
8   chr4  121690394      122409551     NM_198179         QRFPR,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1  142519238      142754732     NR_046228  ANKRD20A12P
1   chr1  181396087      181606500     NM_000721      CACNA1E
2  chr14   21683421       21861864  NM_001170629         CHD8
3  chr14   21683421       21861864     NM_007192      SUPT16H
4  chr14   21683421       21861864     NM_020366      RPGRIP1
6  chr14   21683421       21861864     NM_031314       HNRNPC
7  chr14   21683421       21861864     NR_003029       SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12847965       14142496  NM_001006624          PDPN
1    chr1   12847965       14142496  NM_001007257         PRDM2
2    chr1   12847965       14142496  NM_001009611       PRAMEF4
3    chr1   12847965       14142496  NM_001010847        LRRC38
4    chr1   12847965       14142496  NM_001010889       PRAMEF6
6    chr1   12847965       14142496  NM_001010890       PRAMEF9
7    chr1   12847965       14142496  NM_001012276       PRAMEF8
10   chr1   12847965       14142496  NM_001013407       PRAMEF5
12   chr1   12847965       14142496  NM_001013631      HNRNPCL1
13   chr1   12847965       14142496  NM_001024661      PRAMEF14
15   chr1   12847965       14142496  NM_001039361      PRAMEF10
17   chr1   12847965       14142496  NM_001098376      PRAMEF15
19   chr1   12847965       14142496  NM_001099790      PRAMEF19
21   chr1   12847965       14142496  NM_001099850      PRAMEF18
23   chr1   12847965       14142496  NM_001099851      PRAMEF17
25   chr1   12847965       14142496  NM_001099852      PRAMEF20
27   chr1   12847965       14142496  NM_001100631      PRAMEF22
30   chr1   12847965       14142496  NM_001136561      HNRNPCL2
31   chr1   12847965       14142496  NM_001146181      HNRNPCL3
32   chr1   12847965       14142496  NM_001146344      PRAMEF11
33   chr1   12847965       14142496  NM_001291381     PRAMEF33P
35   chr1   12847965       14142496  NM_001294139       PRAMEF1
36   chr1   12847965       14142496  NM_001300891      PRAMEF27
39   chr1   12847965       14142496  NM_001302551      HNRNPCL4
40   chr1   12847965       14142496  NM_001306072      PRAMEF26
41   chr1   12847965       14142496  NM_001310134      PRAMEF25
45   chr1   12847965       14142496     NM_023014       PRAMEF2
47   chr1   12847965       14142496     NR_111945     PRAMEF36P
49  chr14   21789257       21907297  NM_001170629          CHD8
50  chr14   21789257       21907297     NM_007192       SUPT16H
51  chr14   21789257       21907297     NM_020366       RPGRIP1
53  chr14   21789257       21907297     NR_002916        SNORD8
54  chr14   21789257       21907297     NR_003029        SNORD9
55   chr5  175383842      175781358  NM_001079684      KIAA1191
56   chr5  175383842      175781358  NM_001265615       FAM153B
57   chr5  175383842      175781358  NM_001308196         SIMC1
59   chr5  175383842      175781358     NM_032361         THOC3
60   chr5  175383842      175781358     NR_036494     LOC643201
61   chr5  175383842      175781358     NR_038402  LOC100507387
62   chr5  175383842      175781358     NR_103794  LOC100996385
63   chr7  143733753      143899484  NM_001001659        OR2A14
64   chr7  143733753      143899484  NM_001003702      ARHGEF35
65   chr7  143733753      143899484  NM_001004135        OR2A12
66   chr7  143733753      143899484  NM_001004488        OR2A25
67   chr7  143733753      143899484  NM_001005480         OR2A2
68   chr7  143733753      143899484     NM_012365         OR2A5
69   chr7  143733753      143899484     NM_198495        CTAGE4
70   chr7  143733753      143899484     NR_126022  LOC101928605
71   chr7  143733753      143899484     NR_126023     OR2A1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12971983       13398556  NM_001010889       PRAMEF6
2    chr1   12971983       13398556  NM_001010890       PRAMEF9
3    chr1   12971983       13398556  NM_001012276       PRAMEF8
5    chr1   12971983       13398556  NM_001013407       PRAMEF5
7    chr1   12971983       13398556  NM_001099850      PRAMEF18
9    chr1   12971983       13398556  NM_001100631      PRAMEF22
11   chr1   12971983       13398556  NM_001136561      HNRNPCL2
12   chr1   12971983       13398556  NM_001300891      PRAMEF27
13   chr1   12971983       13398556  NM_001306072      PRAMEF26
14   chr1   12971983       13398556  NM_001310134      PRAMEF25
15   chr1   12971983       13398556     NR_111945     PRAMEF36P
17  chr11   30221640       30365672     NM_000510          FSHB
18  chr11   30221640       30365672     NM_152316       ARL14EP
19  chr15   28802499       29159981  NM_001282468       GOLGA8M
20  chr15   28802499       29159981     NR_026589       WHAMMP2
21  chr15   28802499       29159981     NR_036443       HERC2P9
22  chr15   28802499       29159981     NR_036475  LOC100289656
23  chr15   28802499       29159981     NR_037599     PDCD6IPP2
24  chr15   28802499       29159981     NR_047567     GOLGA6L7P
25  chr20   14621144       14896456     NM_080676       MACROD2
26  chr20   14621144       14896456     NR_037841   MACROD2-AS1
28   chr4  125386880      125568289     NR_110838  LOC101927087
29   chr8   58124134       58407627     NR_026772     LINC00588
30   chr8   58124134       58407627     NR_038235     LINC01606
31   chr8   58124134       58407627     NR_038874     LOC286177
32   chr8   58124134       58407627     NR_125818  LOC101929488,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28483895       29084098  NM_001282468       GOLGA8M
1   chr15   28483895       29084098     NM_004667         HERC2
2   chr15   28483895       29084098     NR_026589       WHAMMP2
3   chr15   28483895       29084098     NR_033351       GOLGA8F
5   chr15   28483895       29084098     NR_033353       GOLGA8G
7   chr15   28483895       29084098     NR_036443       HERC2P9
8   chr15   28483895       29084098     NR_036475  LOC100289656
9   chr15   28483895       29084098     NR_037599     PDCD6IPP2
10  chr15   28483895       29084098     NR_039734     MIR4509-3
12  chr15   30291251       30419930  NM_001282472       GOLGA8J
13  chr15   30291251       30419930     NR_026859        ULK4P3
14  chr17   70953028       71206277     NM_001050         SSTR2
15  chr17   70953028       71206277  NM_001098832       FAM104A
17  chr17   70953028       71206277     NM_018714          COG1
18  chr17   70953028       71206277     NM_139177      SLC39A11
19  chr20   14808391       14921301     NM_080676       MACROD2
20  chr20   14808391       14921301     NR_037841   MACROD2-AS1
22  chr22   19857914       20007109     NM_000754          COMT
25  chr22   19857914       20007109  NM_001282512        TXNRD2
26  chr22   19857914       20007109  NM_001322174        TANGO2
27  chr22   19857914       20007109     NM_001670         ARVCF
30  chr22   19857914       20007109     NR_039918       MIR4761
31   chr3     306269        1734768  NM_001253387          CHL1
33   chr3     306269        1734768  NM_001289081         CNTN6
34   chr3     306269        1734768     NR_110118     LINC01266
35   chr3     306269        1734768     NR_110739      CHL1-AS1
36   chr7   18382697       18583219  NM_001204144         HDAC9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21686969       21856081  NM_001170629          CHD8
1   chr14   21686969       21856081     NM_007192       SUPT16H
2   chr14   21686969       21856081     NM_020366       RPGRIP1
4   chr14   21686969       21856081     NM_031314        HNRNPC
5    chr4   71370028       71480413  NM_001286731          AMTN
6    chr4   71370028       71480413     NM_016519          AMBN
7    chr4   94012835       94163811     NM_001510         GRID2
8    chr4  130559022      130752422     NR_110753  LOC101927282
9    chr5   23998910       24104346     NR_131245       C5orf17
10   chr9    7752048        8002784  NM_001318058       TMEM261
11   chr9   41441375       41543105  NM_001113541     SPATA31A5
12   chr9   41441375       41543105     NM_015667     SPATA31A7
13   chr9   41441375       41543105     NR_026803       FAM74A1
14   chr9  116825813      116952011     NM_001633          AMBP
15   chr9  116825813      116952011     NM_032888       COL27A1
16   chr9  116825813      116952011     NM_138424         KIF12,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   83982830       84230580  NM_001010848      NRG3
2   chr10   83982830       84230580     NR_120666  NRG3-AS1
3   chr14   21834484       22387351  NM_001001912     OR4E2
4   chr14   21834484       22387351  NM_001005465    OR10G3
5   chr14   21834484       22387351  NM_001005466    OR10G2
6   chr14   21834484       22387351  NM_001163380     RAB2B
7   chr14   21834484       22387351  NM_001170629      CHD8
8   chr14   21834484       22387351  NM_001303523      TOX4
9   chr14   21834484       22387351  NM_001317107     OR4E1
10  chr14   21834484       22387351     NM_007192   SUPT16H
11  chr14   21834484       22387351     NM_019852    METTL3
14  chr14   21834484       22387351     NR_002916    SNORD8
15  chr14   21834484       22387351     NR_003029    SNORD9
16  chr14   21834484       22387351     NR_111966     SALL2
18   chr4   71328469       71507966  NM_001145006      MUC7
20   chr4   71328469       71507966  NM_001286731      AMTN
21   chr4   71328469       71507966     NM_016519      AMBN
22   chr4   71328469       71507966     NM_031889      ENAM
24   chr4   91151530       91881726  NM_001145065    CCSER1
26   chr5      81438         251508  NM_001080478   LRRC14B
27   chr5      81438         251508     NM_004168      SDHA
28   chr5      81438         251508     NM_052909  PLEKHG4B
29   chr5      81438         251508     NM_145265   CCDC127
30   chr6  162749859      162894874     NM_013988     PARK2
31   chr9   17195854       17368737  NM_001114395     CNTLN,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10   67677753       68125724  NM_001127384       CTNNA3
2   chr14   21857967       22164083  NM_001001912        OR4E2
3   chr14   21857967       22164083  NM_001005465       OR10G3
4   chr14   21857967       22164083  NM_001005466       OR10G2
5   chr14   21857967       22164083  NM_001163380        RAB2B
6   chr14   21857967       22164083  NM_001170629         CHD8
7   chr14   21857967       22164083  NM_001303523         TOX4
8   chr14   21857967       22164083  NM_001317107        OR4E1
9   chr14   21857967       22164083     NM_019852       METTL3
12  chr14   21857967       22164083     NR_002916       SNORD8
13  chr14   21857967       22164083     NR_003029       SNORD9
14  chr14   21857967       22164083     NR_111966        SALL2
16  chr17   47884180       48250204  NM_001077503         TAC4
17  chr17   47884180       48250204  NM_001199158         KAT7
18  chr17   47884180       48250204  NM_001199898         PDK2
21  chr17   47884180       48250204  NM_001242791     FLJ45513
22  chr17   47884180       48250204  NM_001257359       SAMD14
23  chr17   47884180       48250204     NM_001934         DLX4
24  chr17   47884180       48250204     NM_002204        ITGA3
26  chr17   47884180       48250204     NM_005220         DLX3
27  chr17   47884180       48250204     NM_032595      PPP1R9B
29  chr17   47884180       48250204     NR_024193        HILS1
30  chr17   47884180       48250204     NR_038230    LOC284080
31  chr17   47884180       48250204     NR_135553         SGCA
32   chr4   68972245       69167155     NM_182502    TMPRSS11B
33   chr4   68972245       69167155     NM_207407    TMPRSS11F
34   chr4   68972245       69167155     NR_015446       FTLP10
35   chr4   68972245       69167155     NR_104048  TMPRSS11BNL,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21915022       23258131  NM_001001912     OR4E2
1   chr14   21915022       23258131  NM_001005465    OR10G3
2   chr14   21915022       23258131  NM_001005466    OR10G2
3   chr14   21915022       23258131  NM_001126105    SLC7A7
5   chr14   21915022       23258131  NM_001163380     RAB2B
6   chr14   21915022       23258131  NM_001303523      TOX4
7   chr14   21915022       23258131  NM_001317107     OR4E1
8   chr14   21915022       23258131     NM_001344      DAD1
9   chr14   21915022       23258131     NM_005015     OXA1L
10  chr14   21915022       23258131     NM_019852    METTL3
11  chr14   21915022       23258131     NM_022060     ABHD4
14  chr14   21915022       23258131     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21834262       21985238  NM_001163380        RAB2B
1   chr14   21834262       21985238  NM_001170629         CHD8
2   chr14   21834262       21985238  NM_001303523         TOX4
3   chr14   21834262       21985238     NM_007192      SUPT16H
4   chr14   21834262       21985238     NM_019852       METTL3
7   chr14   21834262       21985238     NR_002916       SNORD8
8   chr14   21834262       21985238     NR_003029       SNORD9
9   chr14   21891093       21998005  NM_001163380        RAB2B
10  chr14   21891093       21998005  NM_001170629         CHD8
11  chr14   21891093       21998005  NM_001303523         TOX4
12  chr14   21891093       21998005     NM_019852       METTL3
15  chr14   21891093       21998005     NR_111966        SALL2
17  chr20   14631614       14942763     NM_080676      MACROD2
18  chr20   14631614       14942763     NR_037841  MACROD2-AS1
20   chr7   18348212       18827411  NM_001204144        HDAC9
29   chr7  117557311      118020798     NM_016200         LSM8
30   chr7  117557311      118020798     NM_019644       ANKRD7
31   chr9   43103131       43431674  NM_001012419    ANKRD20A3
32   chr9   43103131       43431674  NM_001012421    ANKRD20A2
33   chr9   43103131       43431674     NR_027472    LOC642929,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   22329880       22557986     NR_047040     LINC00424
1   chr14   21937424       22079468  NM_001005465        OR10G3
2   chr14   21937424       22079468  NM_001163380         RAB2B
3   chr14   21937424       22079468  NM_001303523          TOX4
4   chr14   21937424       22079468     NM_019852        METTL3
6   chr14   21937424       22079468     NR_111966         SALL2
8    chr2  210239574      210694996  NM_001039538          MAP2
10   chr2  210239574      210694996     NM_182587         UNC80
11   chr5  125588831      125795057  NM_001146319        GRAMD3
13   chr5  125588831      125795057     NR_105039  LOC101927488,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56516334       56621007  NM_001142770        PCDH15
3   chr16   16384340       16512993  NM_001004067         NOMO3
4   chr16   16384340       16512993  NM_001282511        NPIPA8
5   chr16   16384340       16512993     NR_036140     MIR3179-1
6   chr16   16384340       16512993     NR_036141     MIR3180-1
7   chr16   16384340       16512993     NR_036142     MIR3180-2
8   chr16   16384340       16512993     NR_036447        PKD1P1
9   chr16   16384340       16512993     NR_103772  LOC100288162
10  chr16   16384340       16512993     NR_106766     MIR6511A1
11  chr16   16384340       16512993     NR_106971     MIR6511A4
12  chr16   16384340       16512993     NR_107060     MIR6770-2
13  chr16   16384340       16512993     NR_128713     MIR3670-4
14  chr21   22615377       22749177     NM_004540         NCAM2
15   chr6  162857713      162960361     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143526864      143824524  NM_001123068       PPIAL4G
1    chr1  143526864      143824524     NR_104014     LINC01138
2    chr1  143526864      143824524     NR_106967       MIR6077
3    chr1  143526864      143824524     NR_111930  LOC100132057
4    chr1  143592709      143745959     NR_104014     LINC01138
5    chr1  143592709      143745959     NR_106967       MIR6077
6    chr1  143592709      143745959     NR_111930  LOC100132057
7    chr1  245006481      245117993  NM_001312871         COX20
9    chr1  245006481      245117993     NM_004501        HNRNPU
11   chr1  245006481      245117993     NR_132782      SNORA100
12  chr11   48295872       48446848  NM_001004702         OR4C3
13  chr11   48295872       48446848  NM_001004725         OR4S1
14  chr11   48295872       48446848  NM_001005513        OR4C45
15  chr14   21830570       21952682  NM_001163380         RAB2B
16  chr14   21830570       21952682  NM_001170629          CHD8
17  chr14   21830570       21952682  NM_001303523          TOX4
18  chr14   21830570       21952682     NM_007192       SUPT16H
21  chr14   21830570       21952682     NR_002916        SNORD8
22  chr14   21830570       21952682     NR_003029        SNORD9
23   chr9   41878148       42022150     NR_003670        FGF7P3
24   chr9   41878148       42022150     NR_015363         GLIDR
27   chr9   41878148       42022150     NR_126048  LOC102724238
28   chr9   41878148       42022150     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83542193       83797259  NM_001142699          DLG2
4   chr14   21868291       22059721  NM_001005465        OR10G3
5   chr14   21868291       22059721  NM_001163380         RAB2B
6   chr14   21868291       22059721  NM_001170629          CHD8
7   chr14   21868291       22059721  NM_001303523          TOX4
8   chr14   21868291       22059721     NM_019852        METTL3
11  chr14   21868291       22059721     NR_111966         SALL2
13  chr14   47887699       48117648  NM_001113498         MDGA2
14  chr16   79824161       81060218  NM_001100625         CENPN
16  chr16   79824161       81060218  NM_001305017       DYNLRB2
18  chr16   79824161       81060218     NM_020188          CMC2
20  chr16   79824161       81060218     NM_152342         CDYL2
21  chr16   79824161       81060218     NR_104660     LINC01229
23  chr16   79824161       81060218     NR_104665     LINC01227
25  chr16   79824161       81060218     NR_120307  LOC102724084
26  chr16   79824161       81060218     NR_131948       PRCAT47
27   chr2  234372540      235714320     NM_000463        UGT1A1
28   chr2  234372540      235714320  NM_001001394        DNAJB3
29   chr2  234372540      235714320     NM_001072        UGT1A6
30   chr2  234372540      235714320  NM_001282431         ARL4C
31   chr2  234372540      235714320  NM_001282962         HJURP
32   chr2  234372540      235714320  NM_001287395        MROH2A
33   chr2  234372540      235714320     NM_003648          DGKD
35   chr2  234372540      235714320     NM_006944          SPP2
36   chr2  234372540      235714320     NM_007120        UGT1A4
37   chr2  234372540      235714320     NM_018218         USP40
38   chr2  234372540      235714320     NM_019075       UGT1A10
39   chr2  234372540      235714320     NM_019076        UGT1A8
40   chr2  234372540      235714320     NM_019077        UGT1A7
41   chr2  234372540      235714320     NM_019078        UGT1A5
42   chr2  234372540      235714320     NM_019093        UGT1A3
43   chr2  234372540      235714320     NM_021027        UGT1A9
44   chr2  234372540      235714320     NM_024080         TRPM8
47   chr2  234372540      235714320     NR_024322        MSL3P1
48   chr2  234372540      235714320     NR_037694  LOC100286922
49   chr2  234372540      235714320     NR_132376     LINC01173
50   chr3  101066086      101182793  NM_001282803         SENP7,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21865901       22162073  NM_001001912     OR4E2
1   chr14   21865901       22162073  NM_001005465    OR10G3
2   chr14   21865901       22162073  NM_001005466    OR10G2
3   chr14   21865901       22162073  NM_001163380     RAB2B
4   chr14   21865901       22162073  NM_001170629      CHD8
5   chr14   21865901       22162073  NM_001303523      TOX4
6   chr14   21865901       22162073  NM_001317107     OR4E1
7   chr14   21865901       22162073     NM_019852    METTL3
10  chr14   21865901       22162073     NR_111966     SALL2
12   chr3  197149448      197296012     NM_203314      BDH1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21724617       21929835  NM_001163380         RAB2B
1   chr14   21724617       21929835  NM_001170629          CHD8
2   chr14   21724617       21929835     NM_007192       SUPT16H
3   chr14   21724617       21929835     NM_020366       RPGRIP1
5   chr14   21724617       21929835     NM_031314        HNRNPC
7   chr14   21724617       21929835     NR_002916        SNORD8
8   chr14   21724617       21929835     NR_003029        SNORD9
9    chr7   19715798       19843653  NM_001002926       TWISTNB
10   chr7   19715798       19843653     NM_152774       TMEM196
11   chr7   19715798       19843653     NR_036101       MIR3146
12   chr9   41867224       43161755  NM_001012419     ANKRD20A3
14   chr9   41867224       43161755  NM_001012421     ANKRD20A2
16   chr9   41867224       43161755     NM_199244       FOXD4L4
17   chr9   41867224       43161755     NR_003670        FGF7P3
18   chr9   41867224       43161755     NR_015363         GLIDR
19   chr9   41867224       43161755     NR_026558        AQP7P3
20   chr9   41867224       43161755     NR_027472     LOC642929
21   chr9   41867224       43161755     NR_046175     LOC286297
22   chr9   41867224       43161755     NR_121570  LOC101928381
23   chr9   41867224       43161755     NR_121572      GXYLT1P3
27   chr9   41867224       43161755     NR_126048  LOC102724238
28   chr9   41867224       43161755     NR_126049     LOC554249
29   chr9   41867224       43161755     NR_135597  LOC101928195
30   chr9   41867224       43161755     NR_136299  LOC101929583
31   chr9   41867224       43161755     NR_136310  LOC105379252,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28703707       29145137  NM_001282468       GOLGA8M
1   chr15   28703707       29145137     NR_026589       WHAMMP2
2   chr15   28703707       29145137     NR_033351       GOLGA8F
3   chr15   28703707       29145137     NR_033353       GOLGA8G
4   chr15   28703707       29145137     NR_036443       HERC2P9
5   chr15   28703707       29145137     NR_036475  LOC100289656
6   chr15   28703707       29145137     NR_037599     PDCD6IPP2
7   chr15   28703707       29145137     NR_039734     MIR4509-3
8   chr15   28703707       29145137     NR_047567     GOLGA6L7P
9   chr16   88449519       88567892  NM_001127464        ZNF469
10  chr16   88449519       88567892     NM_153813         ZFPM1
11  chr16   88449519       88567892     NR_049821       MIR5189
12   chr6  162672507      162849531     NM_013988         PARK2
13   chr7   75817614       75939148  NM_001110199         SRRM3
14   chr7   75817614       75939148     NM_001540         HSPB1
15   chr7  133268198      134046119     NM_021807         EXOC4
16   chr7  133268198      134046119     NM_032826       SLC35B4
17   chr7  133268198      134046119     NM_144648         LRGUK
18   chr7  133268198      134046119     NR_120513  LOC101928861,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   21880497       22006664  NM_001163380       RAB2B
1   chr14   21880497       22006664  NM_001170629        CHD8
2   chr14   21880497       22006664  NM_001303523        TOX4
3   chr14   21880497       22006664     NM_019852      METTL3
6   chr14   21880497       22006664     NR_111966       SALL2
8    chr5  110294577      110855879  NM_001308058      STARD4
9    chr5  110294577      110855879  NM_001323374       CAMK4
13   chr5  110294577      110855879     NM_033035        TSLP
16   chr5  110294577      110855879     NM_139281       WDR36
17   chr5  110294577      110855879     NR_040093  STARD4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18362529       19063886  NM_001004060         NOMO2
1   chr16   18362529       19063886     NM_001019        RPS15A
2   chr16   18362529       19063886  NM_001160364          TMC7
3   chr16   18362529       19063886  NM_001282511        NPIPA8
5   chr16   18362529       19063886  NM_001313858       ARL6IP1
7   chr16   18362529       19063886     NM_015092          SMG1
9   chr16   18362529       19063886     NR_003569       ABCC6P1
10  chr16   18362529       19063886     NR_036140     MIR3179-1
11  chr16   18362529       19063886     NR_036142     MIR3180-2
12  chr16   18362529       19063886     NR_036144     MIR3180-3
13  chr16   18362529       19063886     NR_037442     MIR3670-1
14  chr16   18362529       19063886     NR_103772  LOC100288162
15  chr16   18362529       19063886     NR_106971     MIR6511A4
16  chr16   18362529       19063886     NR_107060     MIR6770-2
17   chr6  162802410      162931845     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143673622      143839727  NM_001123068       PPIAL4G
1    chr1  143673622      143839727     NR_104014     LINC01138
2    chr1  143673622      143839727     NR_111930  LOC100132057
3   chr12   72605511       74453401     NM_013381         TRHDE
4   chr12   72605511       74453401     NR_026836     TRHDE-AS1
6   chr12   72605511       74453401     NR_110130  LOC101928137
7   chr22   17238025       17484916  NM_001037814          GAB4
8   chr22   17238025       17484916     NM_175878          XKR3
9   chr22   17238025       17484916     NR_003607       HSFY1P1
10   chr6  131087774      131193524  NM_001135554       EPB41L2
11   chr6  131087774      131193524  NM_001195597         SMLR1,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr15   77624751       77794208  NM_001304505     HMG20A
1  chr15   77624751       77794208     NM_024776      PEAK1
2   chr4   69240494       69496955     NM_001077    UGT2B17
3   chr4   69240494       69496955     NM_014058  TMPRSS11E
4   chr7   52609255       53734687     NM_182595  POM121L12
5   chr7   52609255       53734687     NR_038371  LINC01446,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28522626       29995304  NM_001130414         APBA2
1   chr15   28522626       29995304  NM_001282468       GOLGA8M
2   chr15   28522626       29995304  NM_001301025          TJP1
5   chr15   28522626       29995304     NM_004667         HERC2
6   chr15   28522626       29995304     NM_015307      FAM189A1
7   chr15   28522626       29995304     NM_138704        NSMCE3
8   chr15   28522626       29995304     NR_026589       WHAMMP2
9   chr15   28522626       29995304     NR_033351       GOLGA8F
11  chr15   28522626       29995304     NR_033353       GOLGA8G
13  chr15   28522626       29995304     NR_036443       HERC2P9
14  chr15   28522626       29995304     NR_036475  LOC100289656
15  chr15   28522626       29995304     NR_037599     PDCD6IPP2
16  chr15   28522626       29995304     NR_039734     MIR4509-3
18  chr15   28522626       29995304     NR_047567     GOLGA6L7P
19  chr15   28522626       29995304     NR_135221  LOC100130111
20  chr16   68628856       68807162  NM_001317184          CDH1
21  chr16   68628856       68807162  NM_001317195          CDH3
22  chr16   68628856       68807162     NR_106988     MIR7641-2
23   chr9    9530691        9656928     NM_002839         PTPRD
24   chr9   30352141       30461373     NR_046204     LINC01242
25   chr9   41890519       42383727  NM_001012419     ANKRD20A3
26   chr9   41890519       42383727  NM_001012421     ANKRD20A2
27   chr9   41890519       42383727     NR_003670        FGF7P3
28   chr9   41890519       42383727     NR_015363         GLIDR
31   chr9   41890519       42383727     NR_126048  LOC102724238
32   chr9   41890519       42383727     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  189903252      190590365  NM_001317188        BRINP3
2    chr1  189903252      190590365     NR_110716     LINC01351
4   chr10    5080366        5198615  NM_001253908        AKR1C3
7   chr10    5080366        5198615     NR_027916       AKR1C8P
8   chr19   21877741       23176263  NM_001001411        ZNF676
9   chr19   21877741       23176263  NM_001080409         ZNF99
10  chr19   21877741       23176263  NM_001098626         ZNF98
11  chr19   21877741       23176263  NM_001242680        ZNF729
12  chr19   21877741       23176263  NM_001256650         ZNF43
13  chr19   21877741       23176263  NM_001267716        ZNF728
14  chr19   21877741       23176263  NM_001329971        ZNF208
18  chr19   21877741       23176263     NM_020855        ZNF492
19  chr19   21877741       23176263     NM_033468        ZNF257
20  chr19   21877741       23176263     NM_173531        ZNF100
21  chr19   21877741       23176263     NR_024523     LOC641367
22  chr19   21877741       23176263     NR_033899      GOLGA2P9
23  chr19   21877741       23176263     NR_103470  LOC100996349
24  chr19   21877741       23176263     NR_110427  LOC101929124
25  chr19   21877741       23176263     NR_110663     LINC01233
26  chr19   21877741       23176263     NR_135233     LOC374890
28  chr20   14648572       16066693  NM_001033087       MACROD2
30  chr20   14648572       16066693     NR_037841   MACROD2-AS1
32  chr20   14648572       16066693     NR_130924     LOC613266
34  chr22   19869530       20027601     NM_000754          COMT
37  chr22   19869530       20027601  NM_001282512        TXNRD2
38  chr22   19869530       20027601  NM_001283116        TANGO2
41  chr22   19869530       20027601     NM_001670         ARVCF
44  chr22   19869530       20027601     NR_029706        MIR185
45  chr22   19869530       20027601     NR_039918       MIR4761
46   chr9   39113175       40783821  NM_001083124     SPATA31A3
47   chr9   39113175       40783821  NM_001085452     SPATA31A1
49   chr9   39113175       40783821     NM_033160        ZNF658
50   chr9   39113175       40783821     NM_033655       CNTNAP3
51   chr9   39113175       40783821     NR_003528       ZNF658B
52   chr9   39113175       40783821     NR_026801       FAM74A3
53   chr9   39113175       40783821     NR_026803       FAM74A1
56   chr9   39113175       40783821     NR_135122  LOC105379450,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr14   21751454       21871165  NM_001170629        CHD8
1   chr14   21751454       21871165     NM_007192     SUPT16H
2   chr14   21751454       21871165     NM_020366     RPGRIP1
4   chr14   21751454       21871165     NR_002916      SNORD8
5   chr14   21751454       21871165     NR_003029      SNORD9
6   chr15   28675008       28823998     NR_033351     GOLGA8F
7   chr15   28675008       28823998     NR_033353     GOLGA8G
8   chr15   28675008       28823998     NR_039734   MIR4509-3
9    chr5  161074843      161210871     NM_000811      GABRA6
10   chr8    7104433        7334432  NM_001081551    DEFB103A
11   chr8    7104433        7334432  NM_001164457     ZNF705G
12   chr8    7104433        7334432  NM_001205266      DEFB4B
13   chr8    7104433        7334432  NM_001256873     USP17L1
14   chr8    7104433        7334432  NM_001256874     USP17L4
15   chr8    7104433        7334432     NM_058200     SPAG11B
19   chr8    7104433        7334432     NM_080389    DEFB104A
20   chr8    7104433        7334432     NR_003668  DEFB109P1B
21   chr8    7104433        7334432     NR_027000   LINC00965
24   chr8    7104433        7334432     NR_027423      FAM66B
25   chr9    4384481        4498216     NM_004170      SLC1A1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr11   67309092       67426142     NM_000852     GSTP1
1   chr11   67309092       67426142  NM_001166102    NDUFV1
2   chr11   67309092       67426142  NM_001243750     NUDT8
3   chr11   67309092       67426142     NM_005995     TBX10
4   chr11   67309092       67426142     NM_080658      ACY3
6   chr11   67309092       67426142     NR_033791    DOC2GP
7   chr11   67309092       67426142     NR_130935  C11orf72
8   chr14   21815036       21969044  NM_001163380     RAB2B
9   chr14   21815036       21969044  NM_001170629      CHD8
10  chr14   21815036       21969044  NM_001303523      TOX4
11  chr14   21815036       21969044     NM_007192   SUPT16H
12  chr14   21815036       21969044     NM_019852    METTL3
13  chr14   21815036       21969044     NM_020366   RPGRIP1
16  chr14   21815036       21969044     NR_002916    SNORD8
17  chr14   21815036       21969044     NR_003029    SNORD9
18   chr7  108460429      108609231  NM_001024607   C7orf66
19   chr9   24360316       24606979  NM_001271706    IZUMO3,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr10    2074892        2198777     NR_106720      MIR6072
1   chr12   72639760       73043978     NM_013381        TRHDE
2   chr12   72639760       73043978     NR_026836    TRHDE-AS1
4   chr14   21775506       21920213  NM_001170629         CHD8
5   chr14   21775506       21920213     NM_007192      SUPT16H
6   chr14   21775506       21920213     NM_020366      RPGRIP1
8   chr14   21775506       21920213     NR_002916       SNORD8
9   chr14   21775506       21920213     NR_003029       SNORD9
10  chr16   21703472       21898770  NM_001161683         OTOA
11  chr16   21703472       21898770  NM_001310148       NPIPB4
14  chr16   21703472       21898770     NR_003370       RRN3P1
15   chr2   50785848       51015847  NM_001330082        NRXN1
16   chr2   50785848       51015847     NR_130470      MIR8485
17   chr2  212958397      213119689  NM_001042599        ERBB4
18  chr20   14909951       15011971     NM_080676      MACROD2
19  chr20   14909951       15011971     NR_037841  MACROD2-AS1
21   chr7  110614276      110739351  NM_001099658        LRRN3
22   chr7  110614276      110739351  NM_001244606       IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   18377788       18483217  NM_001282511        NPIPA8
1  chr16   18377788       18483217     NR_103772  LOC100288162
2  chr16   18377788       18483217     NR_106971     MIR6511A4
3  chr16   18377788       18483217     NR_107060     MIR6770-2
4   chr2   34207709       34319225     NR_126403     LINC01317
5   chr2   34207709       34319225     NR_132381     LINC01318,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   64863288       64976812  NM_001008778         SPDYC
1   chr11   64863288       64976812  NM_001198868         CAPN1
3   chr11   64863288       64976812  NM_001277233        TM7SF2
4   chr11   64863288       64976812     NM_001997           FAU
5   chr11   64863288       64976812     NM_013265         VPS51
6   chr11   64863288       64976812     NM_014205        ZNHIT2
7   chr11   64863288       64976812     NM_032431         SYVN1
8   chr11   64863288       64976812     NR_037567        MRPL49
11  chr11   64863288       64976812     NR_106809       MIR6751
12  chr13   88043397       88175189     NR_033829     MIR4500HG
13  chr15   26941042       27404529     NM_000810        GABRA5
15  chr15   26941042       27404529  NM_001191320        GABRB3
16  chr15   26941042       27404529  NM_001270873        GABRG3
20  chr15   26941042       27404529     NR_120343    GABRG3-AS1
21  chr16   21522208       21629909  NM_001077180        METTL9
23  chr16   21522208       21629909     NR_002594      SLC7A5P2
24  chr16   21522208       21629909     NR_110930  LOC101927814
25  chr20   14549712       15042920     NM_080676       MACROD2
26  chr20   14549712       15042920     NR_037841   MACROD2-AS1
28  chr20   14549712       15042920     NR_104193   MACROD2-IT1,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0     chr1  145319768      145422693  NM_001277444         NBPF9
1     chr1  145319768      145422693  NM_001278267        NBPF20
2     chr1  145319768      145422693  NM_001302371        NBPF10
3     chr1  145319768      145422693     NM_145277          HFE2
4     chr1  145319768      145422693     NR_104217       NBPF25P
5     chr1  145319768      145422693     NR_125967  LOC101928979
6    chr13   54703177       54828252     NR_108062     LINC00458
8    chr14   21854974       25294909     NM_000257          MYH7
9    chr14   21854974       25294909     NM_000359          TGM1
10   chr14   21854974       25294909  NM_001001912         OR4E2
11   chr14   21854974       25294909  NM_001002000         GMPR2
13   chr14   21854974       25294909  NM_001005465        OR10G3
14   chr14   21854974       25294909  NM_001005466        OR10G2
15   chr14   21854974       25294909  NM_001014842        TM9SF1
16   chr14   21854974       25294909  NM_001018073          PCK2
17   chr14   21854974       25294909  NM_001039619         PRMT5
18   chr14   21854974       25294909  NM_001039771         CBLN3
19   chr14   21854974       25294909  NM_001042635          NGDN
20   chr14   21854974       25294909  NM_001048205          REC8
21   chr14   21854974       25294909  NM_001099274         TINF2
22   chr14   21854974       25294909  NM_001099780        PSMB11
23   chr14   21854974       25294909  NM_001126105        SLC7A7
25   chr14   21854974       25294909  NM_001130706      C14orf93
26   chr14   21854974       25294909  NM_001130725         PSMB5
27   chr14   21854974       25294909  NM_001136022        NFATC4
28   chr14   21854974       25294909  NM_001136050         DHRS1
29   chr14   21854974       25294909  NM_001143919         LTB4R
31   chr14   21854974       25294909  NM_001146028          JPH4
32   chr14   21854974       25294909  NM_001163380         RAB2B
33   chr14   21854974       25294909  NM_001163484        DCAF11
..     ...        ...            ...           ...           ...
136  chr14   21854974       25294909     NR_029595       MIR208A
137  chr14   21854974       25294909     NR_030624       MIR208B
138  chr14   21854974       25294909     NR_039856       MIR4707
142  chr14   21854974       25294909     NR_051979          IPO4
143  chr14   21854974       25294909     NR_102688       DHRS4L1
145  chr14   21854974       25294909     NR_106990       MIR7703
146  chr14   21854974       25294909     NR_110002  LOC101926933
147  chr14   21854974       25294909     NR_110032  LOC101927045
149  chr14   21854974       25294909     NR_110555  LOC102724814
150  chr14   21854974       25294909     NR_111966         SALL2
152  chr14   21854974       25294909     NR_120599     PRMT5-AS1
153  chr14   21854974       25294909     NR_126491          MHRT
155  chr16   80819448       81071681  NM_001100625         CENPN
157  chr16   80819448       81071681  NM_001300728         ATMIN
160  chr16   80819448       81071681     NM_020188          CMC2
161  chr16   80819448       81071681     NM_152342         CDYL2
162  chr16   80819448       81071681     NR_131948       PRCAT47
163   chr4   93809430       97249365  NM_001011516        PDLIM5
164   chr4   93809430       97249365  NM_001128429      SMARCAD1
166   chr4   93809430       97249365     NM_001203        BMPR1B
173   chr4   93809430       97249365     NM_001510         GRID2
174   chr4   93809430       97249365     NM_003728         UNC5C
175   chr4   93809430       97249365     NM_005172         ATOH1
176   chr4   93809430       97249365     NM_005390         PDHA2
177   chr4   93809430       97249365     NM_014485         HPGDS
179   chr4   93809430       97249365     NR_121610    BMPR1B-AS1
180   chr4   93809430       97249365     NR_125922  LOC101929210
181   chr7  110617481      110893987  NM_001099658         LRRN3
182   chr7  110617481      110893987  NM_001244606        IMMP2L
184   chr8    4201734        4544968     NM_033225         CSMD1

[127 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   81798514       82035431     NR_120571     MIR4300HG
1   chr13   63286341       63402833     NR_047029     LINC00448
4   chr14   21827550       22073436  NM_001005465        OR10G3
5   chr14   21827550       22073436  NM_001163380         RAB2B
6   chr14   21827550       22073436  NM_001170629          CHD8
7   chr14   21827550       22073436  NM_001303523          TOX4
8   chr14   21827550       22073436     NM_007192       SUPT16H
9   chr14   21827550       22073436     NM_019852        METTL3
12  chr14   21827550       22073436     NR_002916        SNORD8
13  chr14   21827550       22073436     NR_003029        SNORD9
14  chr14   21827550       22073436     NR_111966         SALL2
16   chr7  133273882      133487447     NM_021807         EXOC4
17   chr7  133273882      133487447     NR_120513  LOC101928861
18   chr8  100585233      100847336     NM_017890        VPS13B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16313933       17804011  NM_001004067         NOMO3
1   chr16   16313933       17804011  NM_001079528         ABCC6
3   chr16   16313933       17804011  NM_001282511        NPIPA8
4   chr16   16313933       17804011     NM_022166         XYLT1
5   chr16   16313933       17804011     NR_036140     MIR3179-1
6   chr16   16313933       17804011     NR_036141     MIR3180-1
7   chr16   16313933       17804011     NR_036142     MIR3180-2
8   chr16   16313933       17804011     NR_036447        PKD1P1
9   chr16   16313933       17804011     NR_103772  LOC100288162
10  chr16   16313933       17804011     NR_106766     MIR6511A1
11  chr16   16313933       17804011     NR_106971     MIR6511A4
12  chr16   16313933       17804011     NR_107060     MIR6770-2
13  chr16   16313933       17804011     NR_128713     MIR3670-4
14  chr16   16313933       17804011     NR_135179  LOC102723692
15  chr17   29336404       29620026     NM_000267           NF1
17  chr17   29336404       29620026     NR_039886       MIR4733
18  chr19   34567168       34680358     NM_015578        LSM14A
19   chr5   82435611       83172368  NM_001318012         XRCC4
21   chr5   82435611       83172368     NM_001884        HAPLN1
22   chr5   82435611       83172368     NM_004385          VCAN
23   chr5   82435611       83172368     NR_136215      VCAN-AS1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr11   48345359       48472949  NM_001004702        OR4C3
1  chr11   48345359       48472949  NM_001005513       OR4C45
2  chr20   14654134       15008711     NM_080676      MACROD2
3  chr20   14654134       15008711     NR_037841  MACROD2-AS1
5   chr6   20902316       21069425     NM_017774       CDKAL1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   22435481       23070203     NR_047040     LINC00424
1   chr13   22435481       23070203     NR_103810     LINC00540
2   chr14   21925470       22068895  NM_001005465        OR10G3
3   chr14   21925470       22068895  NM_001163380         RAB2B
4   chr14   21925470       22068895  NM_001303523          TOX4
5   chr14   21925470       22068895     NM_019852        METTL3
7   chr14   21925470       22068895     NR_111966         SALL2
9   chr14   37998426       41438361     NM_001049         SSTR1
10  chr14   37998426       41438361  NM_001079537      TRAPPC6B
11  chr14   37998426       41438361  NM_001195296        MIPOL1
12  chr14   37998426       41438361  NM_001247988          MIA2
14  chr14   37998426       41438361  NM_001310135          TTC6
16  chr14   37998426       41438361     NM_002687           PNN
17  chr14   37998426       41438361     NM_003616        GEMIN2
18  chr14   37998426       41438361     NM_004496         FOXA1
19  chr14   37998426       41438361     NM_006364        SEC23A
21  chr14   37998426       41438361     NM_175060       CLEC14A
22  chr14   37998426       41438361     NM_203301        FBXO33
24  chr14   37998426       41438361     NR_038935  LOC100288846
25  chr14   37998426       41438361     NR_039982     LINC00639
26  chr14   37998426       41438361     NR_109757     LOC644919
28  chr14   37998426       41438361     NR_135256  LOC105370457
29  chr14   37998426       41438361     NR_135286     LINC00517
30  chr15   28797335       28965314  NM_001282468       GOLGA8M
31  chr15   28797335       28965314     NR_036443       HERC2P9
32  chr22   20076431       20580416  NM_001190326         DGCR8
33  chr22   20076431       20580416  NM_001242313      TMEM191B
34  chr22   20076431       20580416  NM_001243537       CCDC188
35  chr22   20076431       20580416  NM_001278639        RANBP1
38  chr22   20076431       20580416     NM_013373        ZDHHC8
39  chr22   20076431       20580416     NM_015672        RIMBP3
40  chr22   20076431       20580416     NM_022727        TRMT2A
41  chr22   20076431       20580416     NM_023004         RTN4R
42  chr22   20076431       20580416     NM_033257        DGCR6L
43  chr22   20076431       20580416     NR_003563       PI4KAP1
44  chr22   20076431       20580416     NR_026919     LINC00896
45  chr22   20076431       20580416     NR_031618       MIR1286
46  chr22   20076431       20580416     NR_038460     LOC284865
47  chr22   20076431       20580416     NR_106874       MIR6816
48  chr22   20076431       20580416     NR_136560       FAM230A
49  chr22   20076431       20580416     NR_136572  LOC101927859
50   chr4   69298829       70641938     NM_001073       UGT2B11
51   chr4   69298829       70641938     NM_001075       UGT2B10
53   chr4   69298829       70641938     NM_001076       UGT2B15
54   chr4   69298829       70641938     NM_001077       UGT2B17
55   chr4   69298829       70641938  NM_001105677        UGT2A2
56   chr4   69298829       70641938  NM_001207004       UGT2B28
57   chr4   69298829       70641938  NM_001252274        UGT2A1
58   chr4   69298829       70641938  NM_001297615        UGT2B4
61   chr4   69298829       70641938  NM_001330719        UGT2B7
62   chr4   69298829       70641938     NM_014058     TMPRSS11E
63   chr4   69298829       70641938     NM_014465       SULT1B1
64   chr4   69298829       70641938     NM_024743        UGT2A3
65   chr4   69298829       70641938     NR_136191  LOC105377267
66   chr8  100679459      100831522     NM_017890        VPS13B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16455919       16603140  NM_001282511        NPIPA8
1   chr16   16455919       16603140     NR_106971     MIR6511A4
2    chr2   51230349       51515482  NM_001330079         NRXN1
5    chr2   51230349       51515482     NR_135237     LOC730100
6   chr22   20152199       20943841  NM_001242313      TMEM191B
7   chr22   20152199       20943841  NM_001256523         ZNF74
8   chr22   20152199       20943841  NM_001293236         MED15
10  chr22   20152199       20943841     NM_015672        RIMBP3
11  chr22   20152199       20943841     NM_023004         RTN4R
12  chr22   20152199       20943841     NM_033257        DGCR6L
13  chr22   20152199       20943841     NM_153334        SCARF2
14  chr22   20152199       20943841     NR_003563       PI4KAP1
15  chr22   20152199       20943841     NR_026919     LINC00896
16  chr22   20152199       20943841     NR_031618       MIR1286
17  chr22   20152199       20943841     NR_033825        KLHL22
18  chr22   20152199       20943841     NR_038460     LOC284865
19  chr22   20152199       20943841     NR_136560       FAM230A
20  chr22   20152199       20943841     NR_136569     LOC729461
21  chr22   20152199       20943841     NR_136572  LOC101927859,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr13   63281066       63406141     NR_047029     LINC00448
3    chr14   21676025       25203115     NM_000257          MYH7
4    chr14   21676025       25203115     NM_000359          TGM1
5    chr14   21676025       25203115  NM_001001912         OR4E2
6    chr14   21676025       25203115  NM_001002000         GMPR2
8    chr14   21676025       25203115  NM_001005465        OR10G3
9    chr14   21676025       25203115  NM_001005466        OR10G2
10   chr14   21676025       25203115  NM_001014842        TM9SF1
11   chr14   21676025       25203115  NM_001018073          PCK2
12   chr14   21676025       25203115  NM_001039619         PRMT5
13   chr14   21676025       25203115  NM_001039771         CBLN3
14   chr14   21676025       25203115  NM_001042635          NGDN
15   chr14   21676025       25203115  NM_001048205          REC8
16   chr14   21676025       25203115  NM_001099274         TINF2
17   chr14   21676025       25203115  NM_001099780        PSMB11
18   chr14   21676025       25203115  NM_001126105        SLC7A7
20   chr14   21676025       25203115  NM_001130706      C14orf93
21   chr14   21676025       25203115  NM_001130725         PSMB5
22   chr14   21676025       25203115  NM_001136022        NFATC4
23   chr14   21676025       25203115  NM_001136050         DHRS1
24   chr14   21676025       25203115  NM_001143919         LTB4R
26   chr14   21676025       25203115  NM_001146028          JPH4
27   chr14   21676025       25203115  NM_001163380         RAB2B
28   chr14   21676025       25203115  NM_001163484        DCAF11
29   chr14   21676025       25203115  NM_001164692        LTB4R2
30   chr14   21676025       25203115  NM_001164815         ACIN1
32   chr14   21676025       25203115  NM_001170629          CHD8
33   chr14   21676025       25203115  NM_001184739         TSSK4
34   chr14   21676025       25203115  NM_001193635       DHRS4L2
37   chr14   21676025       25203115  NM_001199823    NEDD8-MDP1
..     ...        ...            ...           ...           ...
115  chr14   21676025       25203115     NM_138476          MDP1
116  chr14   21676025       25203115     NM_139247         ADCY4
118  chr14   21676025       25203115     NM_173527          REM2
121  chr14   21676025       25203115     NM_182836       RABGGTA
125  chr14   21676025       25203115     NM_203402         FITM1
126  chr14   21676025       25203115     NR_002916        SNORD8
127  chr14   21676025       25203115     NR_003029        SNORD9
128  chr14   21676025       25203115     NR_023921     DHRS4-AS1
131  chr14   21676025       25203115     NR_029595       MIR208A
132  chr14   21676025       25203115     NR_030624       MIR208B
133  chr14   21676025       25203115     NR_039856       MIR4707
137  chr14   21676025       25203115     NR_051979          IPO4
138  chr14   21676025       25203115     NR_102688       DHRS4L1
140  chr14   21676025       25203115     NR_106990       MIR7703
141  chr14   21676025       25203115     NR_110002  LOC101926933
142  chr14   21676025       25203115     NR_110032  LOC101927045
144  chr14   21676025       25203115     NR_110555  LOC102724814
145  chr14   21676025       25203115     NR_111966         SALL2
147  chr14   21676025       25203115     NR_120599     PRMT5-AS1
148  chr14   21676025       25203115     NR_126491          MHRT
150  chr17     140351         372769  NM_001013672      C17orf97
151  chr17     140351         372769  NM_001190411        RPH3AL
152  chr17     140351         372769     NM_182705         RFLNB
153  chr17     140351         372769     NR_040011  LOC100506388
154  chr17     140351         372769     NR_136407  LOC105371430
155   chr6  162602677      162908741     NM_013988         PARK2
156   chr7   64024199       64153858  NM_001282360        ZNF107
157   chr7   64024199       64153858     NR_033245     LOC641746
158   chr7   64024199       64153858     NR_077227  LOC100128885
160   chr7   64024199       64153858     NR_106898       MIR6839

[115 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21867245       22132000  NM_001005465    OR10G3
1  chr14   21867245       22132000  NM_001005466    OR10G2
2  chr14   21867245       22132000  NM_001163380     RAB2B
3  chr14   21867245       22132000  NM_001170629      CHD8
4  chr14   21867245       22132000  NM_001303523      TOX4
5  chr14   21867245       22132000     NM_019852    METTL3
8  chr14   21867245       22132000     NR_111966     SALL2,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr15   28698033       29095549  NM_001282468       GOLGA8M
1  chr15   28698033       29095549     NR_026589       WHAMMP2
2  chr15   28698033       29095549     NR_033351       GOLGA8F
3  chr15   28698033       29095549     NR_033353       GOLGA8G
4  chr15   28698033       29095549     NR_036443       HERC2P9
5  chr15   28698033       29095549     NR_036475  LOC100289656
6  chr15   28698033       29095549     NR_037599     PDCD6IPP2
7  chr15   28698033       29095549     NR_039734     MIR4509-3
8  chr15   28698033       29095549     NR_047567     GOLGA6L7P
9   chr9   41604284       41704443     NR_003528       ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   71528066       71673503     NM_004616        TSPAN8
1   chr15   28745573       29150669  NM_001282468       GOLGA8M
2   chr15   28745573       29150669     NR_026589       WHAMMP2
3   chr15   28745573       29150669     NR_033351       GOLGA8F
4   chr15   28745573       29150669     NR_033353       GOLGA8G
5   chr15   28745573       29150669     NR_036443       HERC2P9
6   chr15   28745573       29150669     NR_036475  LOC100289656
7   chr15   28745573       29150669     NR_037599     PDCD6IPP2
8   chr15   28745573       29150669     NR_047567     GOLGA6L7P
9   chr20   14738261       15471101  NM_001033087       MACROD2
11  chr20   14738261       15471101     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  243557400      243815930  NM_001206729          AKT3
2    chr1  243557400      243815930     NM_006642       SDCCAG8
4   chr14   21602536       21838901  NM_001004731        OR5AU1
5   chr14   21602536       21838901     NM_007192       SUPT16H
6   chr14   21602536       21838901     NM_020366       RPGRIP1
7   chr14   21602536       21838901     NM_031314        HNRNPC
8   chr14   21602536       21838901     NR_038970     LINC00641
10   chr7  124856023      125097041     NR_110183  LOC101928254
11   chr7  124856023      125097041     NR_110188  LOC101928283
12   chr9   95673436       95813020  NM_001083536          FGD3
15   chr9   95673436       95813020     NR_121565  LOC101927954,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   81835806       81995415     NR_120571     MIR4300HG
1   chr13   22607476       22900581     NR_103810     LINC00540
2   chr13   63115311       63371752     NR_047029     LINC00448
5   chr14   21843804       22126207  NM_001005465        OR10G3
6   chr14   21843804       22126207  NM_001005466        OR10G2
7   chr14   21843804       22126207  NM_001163380         RAB2B
8   chr14   21843804       22126207  NM_001170629          CHD8
9   chr14   21843804       22126207  NM_001303523          TOX4
10  chr14   21843804       22126207     NM_007192       SUPT16H
11  chr14   21843804       22126207     NM_019852        METTL3
14  chr14   21843804       22126207     NR_002916        SNORD8
15  chr14   21843804       22126207     NR_003029        SNORD9
16  chr14   21843804       22126207     NR_111966         SALL2
18  chr17   48043685       48154644     NM_001934          DLX4
19  chr17   48043685       48154644     NM_002204         ITGA3
20  chr17   48043685       48154644     NM_005220          DLX3
22  chr17   48043685       48154644     NR_038230     LOC284080
23   chr4  189401340      190939701     NM_004477          FRG1
24   chr4  189401340      190939701     NR_033869     LINC01060
25   chr4  189401340      190939701     NR_121679     LINC01262
26   chr4  189401340      190939701     NR_132380     LINC01596
27   chr4  189401340      190939701     NR_135513  LOC105379514
28   chr7   64070395       64372687  NM_001160183        ZNF138
29   chr7   64070395       64372687  NM_001282360        ZNF107
30   chr7   64070395       64372687     NM_021148        ZNF273
32   chr7   64070395       64372687     NR_077227  LOC100128885
34   chr7   64070395       64372687     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12858294       13001676  NM_001009611       PRAMEF4
1    chr1   12858294       13001676  NM_001010889       PRAMEF6
2    chr1   12858294       13001676  NM_001010890       PRAMEF9
3    chr1   12858294       13001676  NM_001012276       PRAMEF8
4    chr1   12858294       13001676  NM_001013631      HNRNPCL1
5    chr1   12858294       13001676  NM_001146181      HNRNPCL3
6    chr1   12858294       13001676  NM_001146344      PRAMEF11
7    chr1   12858294       13001676  NM_001302551      HNRNPCL4
8    chr1   12858294       13001676     NM_023014       PRAMEF2
9   chr15   28514776       29832575  NM_001130414         APBA2
10  chr15   28514776       29832575  NM_001282468       GOLGA8M
11  chr15   28514776       29832575     NM_004667         HERC2
12  chr15   28514776       29832575     NM_015307      FAM189A1
13  chr15   28514776       29832575     NM_138704        NSMCE3
14  chr15   28514776       29832575     NR_026589       WHAMMP2
15  chr15   28514776       29832575     NR_033351       GOLGA8F
17  chr15   28514776       29832575     NR_033353       GOLGA8G
19  chr15   28514776       29832575     NR_036443       HERC2P9
20  chr15   28514776       29832575     NR_036475  LOC100289656
21  chr15   28514776       29832575     NR_037599     PDCD6IPP2
22  chr15   28514776       29832575     NR_039734     MIR4509-3
24  chr15   28514776       29832575     NR_047567     GOLGA6L7P
25  chr16   68565974       68821784  NM_001305204         ZFP90
27  chr16   68565974       68821784  NM_001317184          CDH1
28  chr16   68565974       68821784  NM_001317195          CDH3
29  chr16   68565974       68821784     NR_106988     MIR7641-2
30  chr16   68584552       68748601  NM_001305204         ZFP90
32  chr16   68584552       68748601  NM_001317195          CDH3
33  chr17   47857543       47998740  NM_001077503          TAC4
34  chr17   47857543       47998740  NM_001199158          KAT7
35  chr17   47857543       47998740  NM_001242791      FLJ45513
36   chr6   97412294       98860070  NM_001286251        KLHL32
40   chr6   97412294       98860070     NM_198468        MMS22L
41   chr6   97412294       98860070     NR_031579       MIR2113
42   chr6   97412294       98860070     NR_031679      MIR548H3
43   chr6   97412294       98860070     NR_110757  LOC101927314
44   chr7   64052508       64219894  NM_001282360        ZNF107
45   chr7   64052508       64219894     NR_077227  LOC100128885
47   chr7   64052508       64219894     NR_106898       MIR6839
48   chr7  146041465      147359264     NM_014141       CNTNAP2
49   chr7  146041465      147359264     NR_031645      MIR548F4
50   chr7  146041465      147359264     NR_110829  LOC101928700,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   59118910       59259701  NM_001085487      MYSM1
1    chr1   59118910       59259701     NM_002228        JUN
2    chr1   59118910       59259701     NR_034014  LINC01135
3   chr14   21835830       22055604  NM_001005465     OR10G3
4   chr14   21835830       22055604  NM_001163380      RAB2B
5   chr14   21835830       22055604  NM_001170629       CHD8
6   chr14   21835830       22055604  NM_001303523       TOX4
7   chr14   21835830       22055604     NM_007192    SUPT16H
8   chr14   21835830       22055604     NM_019852     METTL3
11  chr14   21835830       22055604     NR_002916     SNORD8
12  chr14   21835830       22055604     NR_003029     SNORD9
13  chr14   21835830       22055604     NR_111966      SALL2
15  chr17    3816226        3972575     NM_002558      P2RX1
16  chr17    3816226        3972575     NM_015113      ZZEF1
17  chr17    3816226        3972575     NM_174955     ATP2A3
18   chr5    5884939        6547958  NM_001145161    UBE2QL1
19   chr5    5884939        6547958     NM_032286      MED10
20   chr5    5884939        6547958     NR_028351   FLJ33360
21   chr7  110387384      111051915  NM_001099658      LRRN3
22   chr7  110387384      111051915  NM_001244606     IMMP2L
24   chr7  110515734      112000919  NM_001099658      LRRN3
25   chr7  110515734      112000919  NM_001244606     IMMP2L
26   chr7  110515734      112000919     NM_014705      DOCK4
27   chr7  110515734      112000919     NM_021994     ZNF277
29   chr7  110515734      112000919     NR_103806  DOCK4-AS1,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr15   30219996       30324893  NM_001301025         TJP1
1  chr18   63793300       64357822     NM_021153        CDH19
2  chr20   14856123       14972816     NM_080676      MACROD2
3  chr20   14856123       14972816     NR_037841  MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21768504       21954623  NM_001163380        RAB2B
1   chr14   21768504       21954623  NM_001170629         CHD8
2   chr14   21768504       21954623  NM_001303523         TOX4
3   chr14   21768504       21954623     NM_007192      SUPT16H
4   chr14   21768504       21954623     NM_020366      RPGRIP1
7   chr14   21768504       21954623     NR_002916       SNORD8
8   chr14   21768504       21954623     NR_003029       SNORD9
9   chr16   83071518       83258891  NM_001220488        CDH13
11  chr20   14628489       14884662     NM_080676      MACROD2
12  chr20   14628489       14884662     NR_037841  MACROD2-AS1
13  chr21   22372826       22562978     NM_004540        NCAM2
14   chr6   92040432       92467043     NR_039786      MIR4643
15   chr6   92040432       92467043     NR_104154        CASC6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28674034       29019703  NM_001282468       GOLGA8M
1   chr15   28674034       29019703     NR_026589       WHAMMP2
2   chr15   28674034       29019703     NR_033351       GOLGA8F
3   chr15   28674034       29019703     NR_033353       GOLGA8G
4   chr15   28674034       29019703     NR_036443       HERC2P9
5   chr15   28674034       29019703     NR_039734     MIR4509-3
6   chr15   29795291       29923182     NM_015307      FAM189A1
7   chr19   21439502       21543012  NM_001297560        ZNF708
10  chr19   21439502       21543012     NR_027130        ZNF738
11   chr4   88529653       88756467  NM_001184694          MEPE
13   chr4   88529653       88756467     NM_004407          DMP1
14   chr4   88529653       88756467     NM_004967          IBSP
15   chr4   88529653       88756467     NM_014208          DSPP
17   chr6   97438459       97549418  NM_001286251        KLHL32
21   chr6   97438459       97549418     NR_031679      MIR548H3
22   chr7   75753115       76221253  NM_001102594          DTX2
24   chr7   75753115       76221253  NM_001110199         SRRM3
25   chr7   75753115       76221253  NM_001110354           ZP3
26   chr7   75753115       76221253     NM_001540         HSPB1
28   chr7   75753115       76221253     NM_012479         YWHAG
29   chr7   75753115       76221253     NM_030570         UPK3B
30   chr7   75753115       76221253     NM_080744         SSC4D
31   chr7   75753115       76221253     NR_003262        FDPSP2
32   chr7   75753115       76221253     NR_029411  LOC100133091
33   chr9    9935813       10129213     NM_002839         PTPRD
34   chr9  119723043      120016944     NM_014010         ASTN2
35   chr9  119723043      120016944     NR_003708      SNORA70C,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  189974971      190143260  NM_001317188        BRINP3
2   chr16    7056666        7658611  NM_001142334        RBFOX1
6   chr22   17221854       17630719  NM_001037814          GAB4
7   chr22   17221854       17630719  NM_001163079         CECR6
8   chr22   17221854       17630719  NM_001289905        IL17RA
9   chr22   17221854       17630719     NM_017829         CECR5
12  chr22   17221854       17630719     NM_175878          XKR3
13  chr22   17221854       17630719     NR_003607       HSFY1P1
14  chr22   17221854       17630719     NR_015352         CECR7
15  chr22   17221854       17630719     NR_103793  LOC100996342
16  chr22   17221854       17630719     NR_134584  LOC101929350
17   chr7  110463228      110649168  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21740084       22269548  NM_001001912         OR4E2
1   chr14   21740084       22269548  NM_001005465        OR10G3
2   chr14   21740084       22269548  NM_001005466        OR10G2
3   chr14   21740084       22269548  NM_001163380         RAB2B
4   chr14   21740084       22269548  NM_001170629          CHD8
5   chr14   21740084       22269548  NM_001303523          TOX4
6   chr14   21740084       22269548  NM_001317107         OR4E1
7   chr14   21740084       22269548     NM_007192       SUPT16H
8   chr14   21740084       22269548     NM_019852        METTL3
9   chr14   21740084       22269548     NM_020366       RPGRIP1
12  chr14   21740084       22269548     NR_002916        SNORD8
13  chr14   21740084       22269548     NR_003029        SNORD9
14  chr14   21740084       22269548     NR_111966         SALL2
16  chr16   18141721       18597726  NM_001004060         NOMO2
17  chr16   18141721       18597726  NM_001282511        NPIPA8
18  chr16   18141721       18597726     NR_003569       ABCC6P1
19  chr16   18141721       18597726     NR_036140     MIR3179-1
20  chr16   18141721       18597726     NR_036142     MIR3180-2
21  chr16   18141721       18597726     NR_036144     MIR3180-3
22  chr16   18141721       18597726     NR_037442     MIR3670-1
23  chr16   18141721       18597726     NR_103772  LOC100288162
24  chr16   18141721       18597726     NR_106971     MIR6511A4
25  chr16   18141721       18597726     NR_107060     MIR6770-2
26   chr7  110548294      112822434  NM_001099658         LRRN3
27   chr7  110548294      112822434  NM_001134468        LSMEM1
28   chr7  110548294      112822434  NM_001146266         GPR85
30   chr7  110548294      112822434  NM_001197079         IFRD1
32   chr7  110548294      112822434  NM_001244606        IMMP2L
33   chr7  110548294      112822434  NM_001287497       TMEM168
35   chr7  110548294      112822434     NM_014705         DOCK4
37   chr7  110548294      112822434     NM_021994        ZNF277
39   chr7  110548294      112822434     NM_152556          BMT2
41   chr7  110548294      112822434     NR_024412     LINC00998
42   chr7  110548294      112822434     NR_103806     DOCK4-AS1
43   chr7  110548294      112822434     NR_110158  LOC101928012
44   chr7  110548294      112822434     NR_110160  LOC100996249
45   chr7  110548294      112822434     NR_110162        HRAT17,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   52783111       52912551  NM_001142495         MYO5A
1   chr15   52783111       52912551  NM_001286495       FAM214A
2   chr15   52783111       52912551  NM_001306191        ARPP19
7   chr16   18159611       19822754  NM_001004060         NOMO2
8   chr16   18159611       19822754  NM_001012991         KNOP1
9   chr16   18159611       19822754     NM_001019        RPS15A
10  chr16   18159611       19822754  NM_001105249          TMC5
11  chr16   18159611       19822754  NM_001160364          TMC7
12  chr16   18159611       19822754  NM_001190983          COQ7
13  chr16   18159611       19822754  NM_001199022        CCP110
14  chr16   18159611       19822754  NM_001256720       CLEC19A
16  chr16   18159611       19822754  NM_001282511        NPIPA8
18  chr16   18159611       19822754  NM_001305121          IQCK
19  chr16   18159611       19822754  NM_001308157         SYT17
21  chr16   18159611       19822754  NM_001313858       ARL6IP1
22  chr16   18159611       19822754  NM_001324066          GDE1
25  chr16   18159611       19822754     NM_015092          SMG1
30  chr16   18159611       19822754     NM_020314      C16orf62
32  chr16   18159611       19822754     NR_003569       ABCC6P1
33  chr16   18159611       19822754     NR_028028      ITPRIPL2
34  chr16   18159611       19822754     NR_036140     MIR3179-1
35  chr16   18159611       19822754     NR_036142     MIR3180-2
36  chr16   18159611       19822754     NR_036144     MIR3180-3
37  chr16   18159611       19822754     NR_037442     MIR3670-1
38  chr16   18159611       19822754     NR_103772  LOC100288162
39  chr16   18159611       19822754     NR_106971     MIR6511A4
40  chr16   18159611       19822754     NR_107060     MIR6770-2
41  chr16   18159611       19822754     NR_119379  LOC102723385
43   chr2   51010892       51120200  NM_001330082         NRXN1
44   chr7  102159149      102313579  NM_001031618        SPDYE2
46   chr7  102159149      102313579  NM_001097615       POLR2J3
47   chr7  102159149      102313579  NM_001114403        UPK3BL
48   chr7  102159149      102313579  NM_001277335        RASA4B
49   chr7  102159149      102313579     NM_006989         RASA4
50   chr7  102159149      102313579     NM_032959       POLR2J2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48251585       48389483  NM_001004702         OR4C3
1   chr11   48251585       48389483  NM_001004725         OR4S1
2   chr11   48251585       48389483  NM_001004726         OR4X1
3   chr11   48251585       48389483  NM_001004727         OR4X2
4   chr11   48251585       48389483  NM_001005513        OR4C45
5   chr14   21933219       23596362  NM_001001912         OR4E2
6   chr14   21933219       23596362  NM_001005465        OR10G3
7   chr14   21933219       23596362  NM_001005466        OR10G2
8   chr14   21933219       23596362  NM_001039619         PRMT5
9   chr14   21933219       23596362  NM_001099780        PSMB11
10  chr14   21933219       23596362  NM_001126105        SLC7A7
12  chr14   21933219       23596362  NM_001130706      C14orf93
13  chr14   21933219       23596362  NM_001130725         PSMB5
15  chr14   21933219       23596362  NM_001163380         RAB2B
16  chr14   21933219       23596362  NM_001164815         ACIN1
18  chr14   21933219       23596362  NM_001267036        SLC7A8
21  chr14   21933219       23596362  NM_001289097         AJUBA
22  chr14   21933219       23596362  NM_001303523          TOX4
23  chr14   21933219       23596362  NM_001317107         OR4E1
24  chr14   21933219       23596362  NM_001318870        MRPL52
25  chr14   21933219       23596362  NM_001329226         LRP10
26  chr14   21933219       23596362     NM_001344          DAD1
27  chr14   21933219       23596362     NM_001805         CEBPE
28  chr14   21933219       23596362     NM_004995         MMP14
29  chr14   21933219       23596362     NM_005015         OXA1L
31  chr14   21933219       23596362     NM_017815         HAUS4
32  chr14   21933219       23596362     NM_017924     C14orf119
33  chr14   21933219       23596362     NM_018107         RBM23
34  chr14   21933219       23596362     NM_019852        METTL3
35  chr14   21933219       23596362     NM_022060         ABHD4
36  chr14   21933219       23596362     NM_022478         CDH24
39  chr14   21933219       23596362     NM_173527          REM2
41  chr14   21933219       23596362     NR_039856       MIR4707
43  chr14   21933219       23596362     NR_110002  LOC101926933
44  chr14   21933219       23596362     NR_111966         SALL2
46  chr14   21933219       23596362     NR_120599     PRMT5-AS1
47   chr4  133404810      134027267     NR_125885  LOC101927359
48   chr4  133404810      134027267     NR_126401     LINC01256
49   chr5   99341809      100060966     NM_198507       FAM174A
50   chr5   99341809      100060966     NR_027503  LOC100133050
51   chr8   86626012       86730426     NR_003594      REXO1L2P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16276398       16489798  NM_001004067         NOMO3
1   chr16   16276398       16489798  NM_001079528         ABCC6
3   chr16   16276398       16489798  NM_001282511        NPIPA8
4   chr16   16276398       16489798     NR_036140     MIR3179-1
5   chr16   16276398       16489798     NR_036141     MIR3180-1
6   chr16   16276398       16489798     NR_036142     MIR3180-2
7   chr16   16276398       16489798     NR_036447        PKD1P1
8   chr16   16276398       16489798     NR_103772  LOC100288162
9   chr16   16276398       16489798     NR_106766     MIR6511A1
10  chr16   16276398       16489798     NR_106971     MIR6511A4
11  chr16   16276398       16489798     NR_107060     MIR6770-2
12  chr16   16276398       16489798     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  122023398      122141707     NR_024430      MIR100HG
7   chr14   21749682       22440295  NM_001001912         OR4E2
8   chr14   21749682       22440295  NM_001005465        OR10G3
9   chr14   21749682       22440295  NM_001005466        OR10G2
10  chr14   21749682       22440295  NM_001163380         RAB2B
11  chr14   21749682       22440295  NM_001170629          CHD8
12  chr14   21749682       22440295  NM_001303523          TOX4
13  chr14   21749682       22440295  NM_001317107         OR4E1
14  chr14   21749682       22440295     NM_007192       SUPT16H
15  chr14   21749682       22440295     NM_019852        METTL3
16  chr14   21749682       22440295     NM_020366       RPGRIP1
19  chr14   21749682       22440295     NR_002916        SNORD8
20  chr14   21749682       22440295     NR_003029        SNORD9
21  chr14   21749682       22440295     NR_111966         SALL2
23  chr15   28655454       29106819  NM_001282468       GOLGA8M
24  chr15   28655454       29106819     NR_026589       WHAMMP2
25  chr15   28655454       29106819     NR_033351       GOLGA8F
26  chr15   28655454       29106819     NR_033353       GOLGA8G
27  chr15   28655454       29106819     NR_036443       HERC2P9
28  chr15   28655454       29106819     NR_036475  LOC100289656
29  chr15   28655454       29106819     NR_037599     PDCD6IPP2
30  chr15   28655454       29106819     NR_039734     MIR4509-3
32  chr15   28655454       29106819     NR_047567     GOLGA6L7P
33   chr2   56585896       56726717  NM_001080433       CCDC85A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143654442      143806505  NM_001123068       PPIAL4G
1    chr1  143654442      143806505     NR_104014     LINC01138
2    chr1  143654442      143806505     NR_106967       MIR6077
3    chr1  143654442      143806505     NR_111930  LOC100132057
4   chr16   21752396       23050918  NM_001135865        NPIPB5
5   chr16   21752396       23050918  NM_001161683          OTOA
6   chr16   21752396       23050918  NM_001164579      C16orf52
7   chr16   21752396       23050918  NM_001258033        POLR3E
8   chr16   21752396       23050918  NM_001310148        NPIPB4
9   chr16   21752396       23050918     NM_001802          CDR2
10  chr16   21752396       23050918     NM_003366        UQCRC2
11  chr16   21752396       23050918     NM_006043        HS3ST2
12  chr16   21752396       23050918     NM_013302         EEF2K
15  chr16   21752396       23050918     NM_173615         VWA3A
16  chr16   21752396       23050918     NM_173806         PDZD9
17  chr16   21752396       23050918     NR_003370        RRN3P1
18  chr16   21752396       23050918     NR_003676     LOC653786
19  chr16   21752396       23050918     NR_027154        SMG1P1
20  chr16   21752396       23050918     NR_027460        RRN3P3
21  chr16   21752396       23050918     NR_136333       MFSD13B
22   chr2   78292273       78436980     NR_110287  LOC101927948
23   chr2   78292273       78436980     NR_110288  LOC101927967
24   chr3   72693224       72816450     NM_018130          SHQ1
25   chr3   72693224       72816450     NR_135531  LOC105377162
26   chr4   69079030       69317716  NM_001031732        YTHDC1
27   chr4   69079030       69317716     NM_014058     TMPRSS11E
28   chr4   69079030       69317716     NM_182502     TMPRSS11B
29   chr4   69079030       69317716     NR_104048   TMPRSS11BNL
30   chr4  108648156      108810473  NM_001136258         SGMS2
31   chr4  108648156      108810473     NR_125929  LOC101929595
32   chr8  143423956      143528664  NM_001291931       TSNARE1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21751183       21876258  NM_001170629       CHD8
1   chr14   21751183       21876258     NM_007192    SUPT16H
2   chr14   21751183       21876258     NM_020366    RPGRIP1
4   chr14   21751183       21876258     NR_002916     SNORD8
5   chr14   21751183       21876258     NR_003029     SNORD9
6   chr15   21176608       21300493     NR_040094  LINC01193
7    chr5   66209380       66346615  NM_001164664      MAST4
12   chr5   66209380       66346615     NR_111908  MAST4-AS1,   chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr2   97221531       97349520  NM_001115016    KANSL3
1  chr2   97221531       97349520  NM_001293083    FER1L5,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   37431371       37591682     NM_052997   ANKRD30A
1  chr22   19037918       19174547  NM_001184781      DGCR2
2  chr22   19037918       19174547  NM_001256534    SLC25A1
3  chr22   19037918       19174547     NM_001835     CLTCL1
4  chr22   19037918       19174547     NM_005315       GSC2
6  chr22   19037918       19174547     NM_022719     DGCR14
7  chr22   19037918       19174547     NM_053006      TSSK2
8  chr22   19037918       19174547     NR_103767  LINC01311
9   chr8    3668954        3901037     NM_033225      CSMD1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21857830       21993148  NM_001163380     RAB2B
1  chr14   21857830       21993148  NM_001170629      CHD8
2  chr14   21857830       21993148  NM_001303523      TOX4
3  chr14   21857830       21993148     NM_019852    METTL3
6  chr14   21857830       21993148     NR_002916    SNORD8
7  chr14   21857830       21993148     NR_003029    SNORD9
8  chr14   21857830       21993148     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  120529842      120783853     NM_000928       PLA2G1B
1   chr12  120529842      120783853  NM_001167606         RAB35
2   chr12  120529842      120783853     NM_002442          MSI1
3   chr12  120529842      120783853     NM_002859           PXN
4   chr12  120529842      120783853     NM_006836          GCN1
5   chr12  120529842      120783853     NM_012240         SIRT4
7   chr12  120529842      120783853     NM_053275         RPLP0
8   chr12  120529842      120783853     NM_207311        BICDL1
9   chr12  120529842      120783853     NR_038924       PXN-AS1
10  chr12  120529842      120783853     NR_039719       MIR4498
11  chr16   88427307       88541674  NM_001127464        ZNF469
12  chr16   88427307       88541674     NM_153813         ZFPM1
13  chr16   88427307       88541674     NR_049821       MIR5189
14  chr20   14640518       15274672  NM_001033087       MACROD2
16  chr20   14640518       15274672     NR_037841   MACROD2-AS1
18  chr21   40136330       41121909  NM_001001713        SH3BGR
19  chr21   40136330       41121909  NM_001007246         BRWD1
20  chr21   40136330       41121909  NM_001080444         IGSF5
21  chr21   40136330       41121909  NM_001146218           WRB
22  chr21   40136330       41121909  NM_001256295          ETS2
23  chr21   40136330       41121909  NM_001261824         PSMG1
24  chr21   40136330       41121909  NM_001278650       B3GALT5
28  chr21   40136330       41121909  NM_001317744    WRB-SH3BGR
31  chr21   40136330       41121909     NM_004965         HMGN1
36  chr21   40136330       41121909     NM_152505         LCA5L
37  chr21   40136330       41121909     NR_026542   B3GALT5-AS1
39  chr21   40136330       41121909     NR_027065     LINC00114
41  chr21   40136330       41121909     NR_046655     BRWD1-AS1
42  chr21   40136330       41121909     NR_106763       MIR6508
43  chr21   40136330       41121909     NR_109926  LOC101928398
44  chr21   40136330       41121909     NR_109962  LOC101928435
45  chr21   40136330       41121909     NR_111942     BRWD1-IT2
46  chr21   40136330       41121909     NR_120405     LOC400867
47   chr8    7134529        7248734  NM_001164457       ZNF705G
48   chr8    7134529        7248734  NM_001256873       USP17L1
49   chr8    7134529        7248734  NM_001256874       USP17L4
50   chr8    7134529        7248734     NR_003668    DEFB109P1B
51   chr8    7134529        7248734     NR_027000     LINC00965
52   chr8    7134529        7248734     NR_027423        FAM66B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  237534369      237665015     NM_001035          RYR2
1    chr1  237534369      237665015     NR_039626       MIR4428
2   chr10   81472087       81853188  NM_001270367       TMEM254
5   chr10   81472087       81853188  NM_001278495        NUTM2B
6   chr10   81472087       81853188     NM_003019         SFTPD
7   chr10   81472087       81853188     NR_002724         MBL1P
8   chr10   81472087       81853188     NR_027431   TMEM254-AS1
9   chr10   81472087       81853188     NR_029407     LOC642361
10  chr10   81472087       81853188     NR_033857       BMS1P21
11  chr10   81472087       81853188     NR_120611    NUTM2B-AS1
14  chr10  120535925      120873015  NM_001303113        FAM45A
15  chr10  120535925      120873015     NM_003750         EIF3A
16  chr10  120535925      120873015     NM_199461        NANOS1
17  chr10  120535925      120873015     NR_002917       SNORA19
18  chr10  120535925      120873015     NR_027141       FAM45BP
19  chr11   48293736       48626088  NM_001004702         OR4C3
20  chr11   48293736       48626088  NM_001004725         OR4S1
21  chr11   48293736       48626088  NM_001005512        OR4A47
22  chr11   48293736       48626088  NM_001005513        OR4C45
23  chr21   22622338       22733297     NM_004540         NCAM2
24  chr22   17196821       17350132     NM_175878          XKR3
25  chr22   17196821       17350132     NR_003607       HSFY1P1
26  chr22   17196821       17350132     NR_134584  LOC101929350
27   chr4   94198935       94309777     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  187115951      187275254     NR_126347  LINC01036
1    chr1  193261349      193393881     NR_125789  LINC01031
2   chr11    1062007        1234928  NM_001304359     MUC5AC
3   chr11    1062007        1234928     NM_002457       MUC2
4   chr11    7603085        7706778  NM_001256568    PPFIBP2
6   chr11    7603085        7706778  NM_001302826     CYB5R2
10  chr14   21822061       21952086  NM_001163380      RAB2B
11  chr14   21822061       21952086  NM_001170629       CHD8
12  chr14   21822061       21952086  NM_001303523       TOX4
13  chr14   21822061       21952086     NM_007192    SUPT16H
16  chr14   21822061       21952086     NR_002916     SNORD8
17  chr14   21822061       21952086     NR_003029     SNORD9
18  chr14   47749081       47852517  NM_001113498      MDGA2
21  chr15   20657239       21534694  NM_001145004   GOLGA6L6
22  chr15   20657239       21534694  NM_001277303     POTEB2
23  chr15   20657239       21534694     NM_207355     POTEB3
24  chr15   20657239       21534694     NR_027411   GOLGA8CP
25  chr15   20657239       21534694     NR_027992     NBEAP1
26  chr15   20657239       21534694     NR_028506      NF1P2
27  chr15   20657239       21534694     NR_036062  MIR3118-2
28  chr15   20657239       21534694     NR_036432    HERC2P3
29  chr15   20657239       21534694     NR_040094  LINC01193
30  chr15   20657239       21534694     NR_049895  MIR5701-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   16327117       16467617  NM_001170798       SLC15A5
1   chr14   21808773       22340223  NM_001001912         OR4E2
2   chr14   21808773       22340223  NM_001005465        OR10G3
3   chr14   21808773       22340223  NM_001005466        OR10G2
4   chr14   21808773       22340223  NM_001163380         RAB2B
5   chr14   21808773       22340223  NM_001170629          CHD8
6   chr14   21808773       22340223  NM_001303523          TOX4
7   chr14   21808773       22340223  NM_001317107         OR4E1
8   chr14   21808773       22340223     NM_007192       SUPT16H
9   chr14   21808773       22340223     NM_019852        METTL3
10  chr14   21808773       22340223     NM_020366       RPGRIP1
13  chr14   21808773       22340223     NR_002916        SNORD8
14  chr14   21808773       22340223     NR_003029        SNORD9
15  chr14   21808773       22340223     NR_111966         SALL2
17   chr6   80927924       81205647     NM_000056        BCKDHB
18   chr7   64058408       64481417  NM_001007253        ERV3-1
19   chr7   64058408       64481417  NM_001160183        ZNF138
20   chr7   64058408       64481417  NM_001282360        ZNF107
21   chr7   64058408       64481417     NM_015852        ZNF117
22   chr7   64058408       64481417     NM_021148        ZNF273
24   chr7   64058408       64481417     NR_077227  LOC100128885
26   chr7   64058408       64481417     NR_106898       MIR6839
27   chr7  111207001      111550501     NM_014705         DOCK4
28   chr7  111207001      111550501     NR_103806     DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   19015311       19344613  NM_001184781         DGCR2
1   chr22   19015311       19344613  NM_001256534       SLC25A1
2   chr22   19015311       19344613     NM_001835        CLTCL1
3   chr22   19015311       19344613     NM_003325          HIRA
4   chr22   19015311       19344613     NM_005315          GSC2
6   chr22   19015311       19344613     NM_022719        DGCR14
7   chr22   19015311       19344613     NM_053006         TSSK2
8   chr22   19015311       19344613     NR_024157        DGCR11
9   chr22   19015311       19344613     NR_103767     LINC01311
10  chr22   19015311       19344613     NR_110533         DGCR5
11  chr22   19937908       20396862     NM_000754          COMT
14  chr22   19937908       20396862  NM_001190326         DGCR8
15  chr22   19937908       20396862  NM_001242313      TMEM191B
16  chr22   19937908       20396862  NM_001243537       CCDC188
17  chr22   19937908       20396862  NM_001278639        RANBP1
20  chr22   19937908       20396862  NM_001283116        TANGO2
23  chr22   19937908       20396862     NM_001670         ARVCF
25  chr22   19937908       20396862     NM_013373        ZDHHC8
26  chr22   19937908       20396862     NM_022727        TRMT2A
27  chr22   19937908       20396862     NM_023004         RTN4R
28  chr22   19937908       20396862     NM_033257        DGCR6L
29  chr22   19937908       20396862     NR_003563       PI4KAP1
30  chr22   19937908       20396862     NR_026919     LINC00896
31  chr22   19937908       20396862     NR_029706        MIR185
32  chr22   19937908       20396862     NR_031618       MIR1286
33  chr22   19937908       20396862     NR_031706       MIR1306
34  chr22   19937908       20396862     NR_037412       MIR3618
35  chr22   19937908       20396862     NR_038460     LOC284865
36  chr22   19937908       20396862     NR_039918       MIR4761
37  chr22   19937908       20396862     NR_106874       MIR6816
38  chr22   19937908       20396862     NR_136560       FAM230A
39  chr22   19937908       20396862     NR_136572  LOC101927859
40   chr3   60382568       60774874  NM_001320899          FHIT
41   chr3   60382568       60774874     NR_128708      MIR548BB
42   chr7   94223266       96885471     NM_000305          PON2
43   chr7   94223266       96885471     NM_000446          PON1
44   chr7   94223266       96885471     NM_000940          PON3
45   chr7   94223266       96885471  NM_001135556       DYNC1I1
46   chr7   94223266       96885471  NM_001160210      SLC25A13
47   chr7   94223266       96885471  NM_001166160       PPP1R9A
49   chr7   94223266       96885471  NM_001184962         PEG10
50   chr7   94223266       96885471  NM_001201450       C7orf76
52   chr7   94223266       96885471  NM_001301139          SGCE
53   chr7   94223266       96885471     NM_002612          PDK4
54   chr7   94223266       96885471     NM_005221          DLX5
55   chr7   94223266       96885471     NM_005222          DLX6
56   chr7   94223266       96885471     NM_006304         SHFM1
57   chr7   94223266       96885471     NM_016116          ASB4
58   chr7   94223266       96885471     NM_020186        SDHAF3
60   chr7   94223266       96885471     NR_015448      DLX6-AS1
61   chr7   94223266       96885471     NR_030322        MIR591
62   chr7   94223266       96885471     NR_038948  LOC100506136,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  193280605      193946805     NR_125789  LINC01031
1   chr14   21766595       22927088  NM_001001912      OR4E2
2   chr14   21766595       22927088  NM_001005465     OR10G3
3   chr14   21766595       22927088  NM_001005466     OR10G2
4   chr14   21766595       22927088  NM_001163380      RAB2B
5   chr14   21766595       22927088  NM_001170629       CHD8
6   chr14   21766595       22927088  NM_001303523       TOX4
7   chr14   21766595       22927088  NM_001317107      OR4E1
8   chr14   21766595       22927088     NM_007192    SUPT16H
9   chr14   21766595       22927088     NM_019852     METTL3
10  chr14   21766595       22927088     NM_020366    RPGRIP1
13  chr14   21766595       22927088     NR_002916     SNORD8
14  chr14   21766595       22927088     NR_003029     SNORD9
15  chr14   21766595       22927088     NR_111966      SALL2
17   chr7   81971492       82073834     NM_000722   CACNA2D1
19   chr7  110616860      110919601  NM_001099658      LRRN3
20   chr7  110616860      110919601  NM_001244606     IMMP2L
22   chr9  102047365      102308610     NR_102270       NAMA,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21566450       22160854  NM_001001912      OR4E2
1   chr14   21566450       22160854  NM_001004731     OR5AU1
2   chr14   21566450       22160854  NM_001005465     OR10G3
3   chr14   21566450       22160854  NM_001005466     OR10G2
4   chr14   21566450       22160854  NM_001101672     ZNF219
6   chr14   21566450       22160854  NM_001146683    TMEM253
7   chr14   21566450       22160854  NM_001163380      RAB2B
8   chr14   21566450       22160854  NM_001170629       CHD8
9   chr14   21566450       22160854  NM_001303523       TOX4
10  chr14   21566450       22160854  NM_001317107      OR4E1
11  chr14   21566450       22160854     NM_007192    SUPT16H
13  chr14   21566450       22160854     NM_019852     METTL3
14  chr14   21566450       22160854     NM_020366    RPGRIP1
16  chr14   21566450       22160854     NM_031314     HNRNPC
18  chr14   21566450       22160854     NR_002916     SNORD8
19  chr14   21566450       22160854     NR_003029     SNORD9
20  chr14   21566450       22160854     NR_038970  LINC00641
22  chr14   21566450       22160854     NR_111966      SALL2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   67975971       68124773  NM_001127384     CTNNA3
2   chr14   21762336       22228596  NM_001001912      OR4E2
3   chr14   21762336       22228596  NM_001005465     OR10G3
4   chr14   21762336       22228596  NM_001005466     OR10G2
5   chr14   21762336       22228596  NM_001163380      RAB2B
6   chr14   21762336       22228596  NM_001170629       CHD8
7   chr14   21762336       22228596  NM_001303523       TOX4
8   chr14   21762336       22228596  NM_001317107      OR4E1
9   chr14   21762336       22228596     NM_007192    SUPT16H
10  chr14   21762336       22228596     NM_019852     METTL3
11  chr14   21762336       22228596     NM_020366    RPGRIP1
14  chr14   21762336       22228596     NR_002916     SNORD8
15  chr14   21762336       22228596     NR_003029     SNORD9
16  chr14   21762336       22228596     NR_111966      SALL2
18  chr15   28168960       28393014     NM_000275       OCA2
20  chr15   28168960       28393014     NM_004667      HERC2
21  chr17   21323479       21570370  NM_001113434   C17orf51
22   chr3    4056386        4535585  NM_001164675      SUMF1
23   chr3    4056386        4535585  NM_001168272      ITPR1
24   chr3    4056386        4535585  NM_001243723     SETMAR
26   chr3    4056386        4535585     NR_108075  ITPR1-AS1
27   chr7  110527246      110678700  NM_001244606     IMMP2L
29   chr7  111232176      111430343     NM_014705      DOCK4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143664855      143817728  NM_001123068       PPIAL4G
1    chr1  143664855      143817728     NR_104014     LINC01138
2    chr1  143664855      143817728     NR_106967       MIR6077
3    chr1  143664855      143817728     NR_111930  LOC100132057
4   chr11   99199316       99719877  NM_001243270         CNTN5
7   chr18   24588127       25154000  NM_001256316         CHST9
8   chr18   24588127       25154000     NR_134589  LOC105372038
9    chr6  130150183      130278858  NM_001010876       TMEM244
10   chr7  124953751      125551158     NR_110188  LOC101928283
11   chr9   28562011       28664843  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  187083395      187343862     NR_126347  LINC01036
1   chr14   21941721       22121705  NM_001005465     OR10G3
2   chr14   21941721       22121705  NM_001005466     OR10G2
3   chr14   21941721       22121705  NM_001163380      RAB2B
4   chr14   21941721       22121705  NM_001303523       TOX4
5   chr14   21941721       22121705     NM_019852     METTL3
7   chr14   21941721       22121705     NR_111966      SALL2
9    chr2   97248150       97356043  NM_001115016     KANSL3
10   chr2   97248150       97356043  NM_001293083     FER1L5
12   chr9  108504763      108672742     NM_018112    TMEM38B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28772685       29853844  NM_001130414         APBA2
1   chr15   28772685       29853844  NM_001282468       GOLGA8M
2   chr15   28772685       29853844     NM_015307      FAM189A1
3   chr15   28772685       29853844     NM_138704        NSMCE3
4   chr15   28772685       29853844     NR_026589       WHAMMP2
5   chr15   28772685       29853844     NR_033351       GOLGA8F
6   chr15   28772685       29853844     NR_033353       GOLGA8G
7   chr15   28772685       29853844     NR_036443       HERC2P9
8   chr15   28772685       29853844     NR_036475  LOC100289656
9   chr15   28772685       29853844     NR_037599     PDCD6IPP2
10  chr15   28772685       29853844     NR_047567     GOLGA6L7P
11  chr16   68582247       68703355  NM_001305204         ZFP90
13  chr16   68582247       68703355  NM_001317195          CDH3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  181397674      181729697     NM_000721       CACNA1E
1   chr14   21911930       22100541  NM_001005465        OR10G3
2   chr14   21911930       22100541  NM_001163380         RAB2B
3   chr14   21911930       22100541  NM_001303523          TOX4
4   chr14   21911930       22100541     NM_019852        METTL3
6   chr14   21911930       22100541     NR_111966         SALL2
8   chr15   28707885       28828265     NR_033351       GOLGA8F
9   chr15   28707885       28828265     NR_033353       GOLGA8G
10  chr15   28707885       28828265     NR_039734     MIR4509-3
11  chr20   14666094       14814161     NM_080676       MACROD2
12   chr8  143449134      143626715  NM_001291931       TSNARE1
13   chr8  143449134      143626715     NM_001702        ADGRB1
15   chr9   28487448       28680848  NM_001258282        LINGO2
17   chr9   67145307       67384220     NR_002817        AQP7P1
18   chr9   67145307       67384220     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143692567      143941184  NM_001123068       PPIAL4G
1    chr1  143692567      143941184  NM_001287385        FAM72C
2    chr1  143692567      143941184  NM_001345942        FAM72D
6    chr1  143692567      143941184     NR_104014     LINC01138
7    chr1  143692567      143941184     NR_111930  LOC100132057
9   chr10   81456543       81793439  NM_001278495        NUTM2B
10  chr10   81456543       81793439     NM_003019         SFTPD
11  chr10   81456543       81793439     NR_002724         MBL1P
12  chr10   81456543       81793439     NR_029407     LOC642361
13  chr10   81456543       81793439     NR_033857       BMS1P21
14  chr10   81456543       81793439     NR_120611    NUTM2B-AS1
17  chr16   21518954       21622390  NM_001077180        METTL9
19  chr16   21518954       21622390     NR_002594      SLC7A5P2
20  chr16   21518954       21622390     NR_110930  LOC101927814
21   chr7   93264248       93394730     NR_039796       MIR4652,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   89101867       89405302  NM_001143837          NOX4
5   chr11   89101867       89405302     NM_153696        FOLH1B
7   chr22   17181078       18738764  NM_001037814          GAB4
8   chr22   17181078       18738764  NM_001122731        MICAL3
9   chr22   17181078       18738764  NM_001127649         PEX26
11  chr22   17181078       18738764  NM_001163079         CECR6
12  chr22   17181078       18738764  NM_001193414         TUBA8
14  chr22   17181078       18738764  NM_001244567           BID
17  chr22   17181078       18738764  NM_001270733       BCL2L13
18  chr22   17181078       18738764  NM_001282227         CECR1
20  chr22   17181078       18738764  NM_001288707  LOC101929372
21  chr22   17181078       18738764  NM_001289905        IL17RA
22  chr22   17181078       18738764  NM_001290046         CECR2
24  chr22   17181078       18738764  NM_001303484      SLC25A18
25  chr22   17181078       18738764     NM_001696      ATP6V1E1
28  chr22   17181078       18738764     NM_017414         USP18
29  chr22   17181078       18738764     NM_017829         CECR5
32  chr22   17181078       18738764     NM_175878          XKR3
34  chr22   17181078       18738764     NR_003607       HSFY1P1
35  chr22   17181078       18738764     NR_015352         CECR7
36  chr22   17181078       18738764     NR_024417      FLJ41941
37  chr22   17181078       18738764     NR_024482     CECR5-AS1
38  chr22   17181078       18738764     NR_030378        MIR648
39  chr22   17181078       18738764     NR_036168     MIR3198-1
40  chr22   17181078       18738764     NR_038398         CECR3
42  chr22   17181078       18738764     NR_103718     LINC00528
43  chr22   17181078       18738764     NR_103793  LOC100996342
44  chr22   17181078       18738764     NR_134584  LOC101929350
45  chr22   17181078       18738764     NR_136561     LOC642643
46  chr22   17181078       18738764     NR_136570  LOC100996415
47  chr22   17181078       18738764     NR_136574  LOC105379550
48   chr7    4321818        5747084  NM_001033518         WIPI2
50   chr7    4321818        5747084  NM_001037165         FOXK1
51   chr7    4321818        5747084  NM_001040661       SLC29A4
52   chr7    4321818        5747084  NM_001080495        TNRC18
53   chr7    4321818        5747084  NM_001100600          MMD2
54   chr7    4321818        5747084     NM_001101          ACTB
55   chr7    4321818        5747084  NM_001204456          RBAK
56   chr7    4321818        5747084  NM_001204513   RBAK-RBAKDN
57   chr7    4321818        5747084  NM_001321213        FBXL18
58   chr7    4321818        5747084     NM_003088         FSCN1
59   chr7    4321818        5747084     NM_014855         AP5Z1
60   chr7    4321818        5747084     NM_018059         RADIL
61   chr7    4321818        5747084     NM_020144        PAPOLB
64   chr7    4321818        5747084     NM_207116        RNF216
65   chr7    4321818        5747084     NR_015343        RBAKDN
66   chr7    4321818        5747084     NR_015449      RNF216P1
67   chr7    4321818        5747084     NR_030318        MIR589
68   chr7    4321818        5747084     NR_034163       ZNF890P
69   chr7    4321818        5747084     NR_039800       MIR4656
70   chr7    4321818        5747084     NR_046834    RNF216-IT1
72   chr7    4321818        5747084     NR_126168     LOC221946
73   chr9   28667811       28932284  NM_001258282        LINGO2
75   chr9   28667811       28932284     NR_030597        MIR876
76   chr9   28667811       28932284     NR_030618        MIR873,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21823864       21963904  NM_001163380     RAB2B
1  chr14   21823864       21963904  NM_001170629      CHD8
2  chr14   21823864       21963904  NM_001303523      TOX4
3  chr14   21823864       21963904     NM_007192   SUPT16H
6  chr14   21823864       21963904     NR_002916    SNORD8
7  chr14   21823864       21963904     NR_003029    SNORD9
8   chr3   24613906       25046137  NM_001290216      RARB,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   14909250       15039732     NM_015209       KAZN
2   chr14   21766770       22171866  NM_001001912      OR4E2
3   chr14   21766770       22171866  NM_001005465     OR10G3
4   chr14   21766770       22171866  NM_001005466     OR10G2
5   chr14   21766770       22171866  NM_001163380      RAB2B
6   chr14   21766770       22171866  NM_001170629       CHD8
7   chr14   21766770       22171866  NM_001303523       TOX4
8   chr14   21766770       22171866  NM_001317107      OR4E1
9   chr14   21766770       22171866     NM_007192    SUPT16H
10  chr14   21766770       22171866     NM_019852     METTL3
11  chr14   21766770       22171866     NM_020366    RPGRIP1
14  chr14   21766770       22171866     NR_002916     SNORD8
15  chr14   21766770       22171866     NR_003029     SNORD9
16  chr14   21766770       22171866     NR_111966      SALL2
18   chr4  169194335      170200532  NM_001012967     DDX60L
19   chr4  169194335      170200532  NM_001166108      PALLD
23   chr4  169194335      170200532     NM_017631      DDX60
24   chr4  169194335      170200532     NM_020870     SH3RF1
25   chr4  169194335      170200532     NM_032783       CBR4
26   chr6  144724445      144836873     NM_007124       UTRN
27   chr6  144724445      144836873     NR_132778    SNORA98
28   chr7   53258075       53845827     NR_038371  LINC01446,   chrom  cnv_start  cnv_terminate    tx_name     gene_name
0  chr2  186273062      186714492  NM_173651         FSIP2
1  chr2  186273062      186714492  NR_110214  LOC101927196
4  chr2  186273062      186714492  NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name               gene_name
0    chr1  245015454      245125499     NM_004501                  HNRNPU
1    chr1  245015454      245125499     NR_132782                SNORA100
2   chr16   16423593       16528682  NM_001282511                  NPIPA8
3   chr16   16423593       16528682     NR_036447                  PKD1P1
4   chr16   16423593       16528682     NR_106971               MIR6511A4
5    chr2   52006086       52141179     NR_135237               LOC730100
6   chr20   14704860       15266162  NM_001033087                 MACROD2
8   chr20   14704860       15266162     NR_037841             MACROD2-AS1
10   chr7   75743373       75894014  NM_001110199                   SRRM3
11   chr7   75814764       77132563  NM_001102594                    DTX2
13   chr7   75814764       77132563  NM_001110199                   SRRM3
14   chr7   75814764       77132563  NM_001110354                     ZP3
15   chr7   75814764       77132563     NM_001540                   HSPB1
16   chr7   75814764       77132563     NM_006682                    FGL2
18   chr7   75814764       77132563     NM_012479                   YWHAG
19   chr7   75814764       77132563     NM_017439                    GSAP
20   chr7   75814764       77132563     NM_020879                 CCDC146
21   chr7   75814764       77132563     NM_030570                   UPK3B
22   chr7   75814764       77132563     NM_080744                   SSC4D
23   chr7   75814764       77132563     NM_152992                  POMZP3
24   chr7   75814764       77132563     NR_003262                  FDPSP2
25   chr7   75814764       77132563     NR_023383  DTX2P1-UPK3BP1-PMS2P11
26   chr7   75814764       77132563     NR_028058                  PMS2P9
27   chr7   75814764       77132563     NR_029411            LOC100133091
28   chr7   75814764       77132563     NR_110073            LOC101927243,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   82163757       82278968  NM_001297704        ADGRL2
2   chr1  143654953      143913262  NM_001123068       PPIAL4G
3   chr1  143654953      143913262  NM_001287385        FAM72C
4   chr1  143654953      143913262  NM_001345942        FAM72D
8   chr1  143654953      143913262     NR_104014     LINC01138
9   chr1  143654953      143913262     NR_106967       MIR6077
10  chr1  143654953      143913262     NR_111930  LOC100132057
12  chr7  110519819      111153973  NM_001099658         LRRN3
13  chr7  110519819      111153973  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4199550        4663037  NM_001004137        OR52M1
1   chr11    4199550        4663037  NM_001004751        OR51D1
2   chr11    4199550        4663037  NM_001005161        OR52B4
3   chr11    4199550        4663037  NM_001005169        OR52I1
4   chr11    4199550        4663037  NM_001005170        OR52I2
5   chr11    4199550        4663037  NM_001005171        OR52K1
6   chr11    4199550        4663037  NM_001005172        OR52K2
7   chr11    4199550        4663037     NM_003141        TRIM21
8   chr11    4199550        4663037     NM_018073        TRIM68
9   chr11    4199550        4663037     NM_144663      C11orf40
10  chr11    4199550        4663037     NR_047550  LOC100506082
11   chr3    3865196        4108837  NM_001324189         LRRN1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  132040895      132311846  NM_001012393         OPCML
1   chr11  132040895      132311846  NM_001048209           NTM
6   chr11  132040895      132311846     NR_046820        NTM-IT
7   chr16   16346763       16479639  NM_001004067         NOMO3
8   chr16   16346763       16479639  NM_001282511        NPIPA8
9   chr16   16346763       16479639     NR_036140     MIR3179-1
10  chr16   16346763       16479639     NR_036141     MIR3180-1
11  chr16   16346763       16479639     NR_036142     MIR3180-2
12  chr16   16346763       16479639     NR_036447        PKD1P1
13  chr16   16346763       16479639     NR_103772  LOC100288162
14  chr16   16346763       16479639     NR_106766     MIR6511A1
15  chr16   16346763       16479639     NR_106971     MIR6511A4
16  chr16   16346763       16479639     NR_107060     MIR6770-2
17  chr16   16346763       16479639     NR_128713     MIR3670-4
18   chr2  153111179      153248264     NM_052905         FMNL2
19   chr3  131180266      131351688  NM_001289112         CPNE4
20   chr3  131180266      131351688     NM_007208         MRPL3
23   chr3  131180266      131351688     NR_002985       SNORA58
24   chr4  169251294      171525434  NM_001012967        DDX60L
25   chr4  169251294      171525434  NM_001166108         PALLD
28   chr4  169251294      171525434  NM_001243372         CLCN3
30   chr4  169251294      171525434  NM_001286682         AADAT
33   chr4  169251294      171525434  NM_001301647        MFAP3L
35   chr4  169251294      171525434     NM_012224          NEK1
37   chr4  169251294      171525434     NM_017867          HPF1
38   chr4  169251294      171525434     NM_020870        SH3RF1
39   chr4  169251294      171525434     NM_032783          CBR4
40   chr4  169251294      171525434     NR_037878  LOC100506085
41   chr4  169251294      171525434     NR_125889     LINC01612
43   chr7    4126475        5894644  NM_001033518         WIPI2
45   chr7    4126475        5894644  NM_001037165         FOXK1
46   chr7    4126475        5894644  NM_001040661       SLC29A4
47   chr7    4126475        5894644  NM_001079653          SDK1
48   chr7    4126475        5894644  NM_001080495        TNRC18
49   chr7    4126475        5894644  NM_001100600          MMD2
50   chr7    4126475        5894644     NM_001101          ACTB
51   chr7    4126475        5894644  NM_001204456          RBAK
52   chr7    4126475        5894644  NM_001204513   RBAK-RBAKDN
53   chr7    4126475        5894644  NM_001321213        FBXL18
54   chr7    4126475        5894644     NM_003088         FSCN1
55   chr7    4126475        5894644     NM_014855         AP5Z1
56   chr7    4126475        5894644     NM_018059         RADIL
57   chr7    4126475        5894644     NM_020144        PAPOLB
61   chr7    4126475        5894644     NM_207116        RNF216
62   chr7    4126475        5894644     NR_015343        RBAKDN
63   chr7    4126475        5894644     NR_015449      RNF216P1
64   chr7    4126475        5894644     NR_023382       ZNF815P
65   chr7    4126475        5894644     NR_030318        MIR589
66   chr7    4126475        5894644     NR_034163       ZNF890P
67   chr7    4126475        5894644     NR_039800       MIR4656
68   chr7    4126475        5894644     NR_046834    RNF216-IT1
70   chr7    4126475        5894644     NR_106934       MIR6874
71   chr7    4126475        5894644     NR_126168     LOC221946
72   chr8  124956012      125060602  NM_001039112        FER1L6
73   chr8  124956012      125060602     NR_040044    FER1L6-AS1
74   chr8  124956012      125060602     NR_103547    FER1L6-AS2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108389910      108653402     NM_006113          VAV3
1    chr1  108389910      108653402     NR_046653      VAV3-AS1
2    chr1  108389910      108653402     NR_107006       MIR7852
3   chr15   98225560       98458581     NR_024172     LINC00923
4   chr16   14800564       14936601  NM_001277323        NPIPA3
6   chr16   14800564       14936601  NM_001277324        NPIPA2
8   chr16   14800564       14936601     NM_014287         NOMO1
9   chr16   14800564       14936601     NR_023387       ABCC6P2
10   chr2  186236248      187211614     NM_173651         FSIP2
11   chr2  186236248      187211614     NR_110214  LOC101927196
14   chr2  186236248      187211614     NR_110218     LINC01473
15   chr2  186236248      187211614     NR_144453     FSIP2-AS1
17  chr21   23454115       23564971     NR_038400     LINC00308
18  chr21   23454115       23564971     NR_109959  LOC101927843
19   chr6   22024217       22197497     NR_015410        CASC15
20   chr6   22024217       22197497     NR_034143         NBAT1
21   chr8   48487138       48689584  NM_001080394         SPIDR
22   chr8   48487138       48689584     NM_005195         CEBPD
23   chr8   48487138       48689584     NM_006904         PRKDC,      chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr11    7755093        8178102  NM_001003745        OR10A3
1    chr11    7755093        8178102  NM_001004461        OR10A6
2    chr11    7755093        8178102  NM_001135109          RIC3
3    chr11    7755093        8178102     NM_003320           TUB
4    chr11    7755093        8178102     NM_003754         EIF3F
5    chr11    7755093        8178102     NM_153444         OR5P2
6    chr11    7755093        8178102     NM_153445         OR5P3
7    chr11    7755093        8178102     NM_176821        NLRP10
9    chr11    7755093        8178102     NR_027711        OR5E1P
10   chr11    7755093        8178102     NR_036678     LOC283299
12   chr11    7755093        8178102     NR_120537       TUB-AS1
13   chr11    7755093        8178102     NR_125366        CASC23
15   chr11   48396421       48652594  NM_001005512        OR4A47
16   chr12   72683649       72822577     NM_013381         TRHDE
17   chr14   21752248       22477579  NM_001001912         OR4E2
18   chr14   21752248       22477579  NM_001005465        OR10G3
19   chr14   21752248       22477579  NM_001005466        OR10G2
20   chr14   21752248       22477579  NM_001163380         RAB2B
21   chr14   21752248       22477579  NM_001170629          CHD8
22   chr14   21752248       22477579  NM_001303523          TOX4
23   chr14   21752248       22477579  NM_001317107         OR4E1
24   chr14   21752248       22477579     NM_007192       SUPT16H
25   chr14   21752248       22477579     NM_019852        METTL3
26   chr14   21752248       22477579     NM_020366       RPGRIP1
29   chr14   21752248       22477579     NR_002916        SNORD8
30   chr14   21752248       22477579     NR_003029        SNORD9
31   chr14   21752248       22477579     NR_111966         SALL2
33   chr15   28718415       28822710     NR_033351       GOLGA8F
34   chr15   28718415       28822710     NR_033353       GOLGA8G
35   chr15   28718415       28822710     NR_039734     MIR4509-3
..     ...        ...            ...           ...           ...
69   chr17   78266863       79823104     NM_020761         RPTOR
71   chr17   78266863       79823104     NM_024591         CHMP6
73   chr17   78266863       79823104     NM_144679        TEPSIN
74   chr17   78266863       79823104     NM_178520       TMEM105
75   chr17   78266863       79823104     NM_199287       CCDC137
76   chr17   78266863       79823104     NR_026857    BAIAP2-AS1
77   chr17   78266863       79823104     NR_027255      AATK-AS1
78   chr17   78266863       79823104     NR_029376  LOC100294362
79   chr17   78266863       79823104     NR_029897        MIR338
80   chr17   78266863       79823104     NR_030394        MIR657
81   chr17   78266863       79823104     NR_031652       MIR1250
82   chr17   78266863       79823104     NR_033338       FAAP100
83   chr17   78266863       79823104     NR_036151       MIR3065
84   chr17   78266863       79823104     NR_036152       MIR3186
85   chr17   78266863       79823104     NR_037688         ACTG1
86   chr17   78266863       79823104     NR_038080     LINC00482
87   chr17   78266863       79823104     NR_039883       MIR4730
88   chr17   78266863       79823104     NR_039894       MIR4740
89   chr17   78266863       79823104     NR_106844       MIR6786
90   chr17   78266863       79823104     NR_110852  LOC101928855
95   chr17   78266863       79823104     NR_135654  LOC105371925
96   chr19    1917860        2034352     NM_001319       CSNK1G2
97   chr19    1917860        2034352  NM_001329539        SCAMP4
98   chr19    1917860        2034352     NM_017797         BTBD2
99   chr19    1917860        2034352     NR_033400   CSNK1G2-AS1
100  chr21   30150414       30447761  NM_001320724        RWDD2B
101  chr21   30150414       30447761  NM_001320766          LTN1
102  chr21   30150414       30447761     NM_006447         USP16
103  chr21   30150414       30447761     NM_006585          CCT8
104  chr21   30150414       30447761     NM_013240        N6AMT1

[88 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21903654       22150317  NM_001001912      OR4E2
1   chr14   21903654       22150317  NM_001005465     OR10G3
2   chr14   21903654       22150317  NM_001005466     OR10G2
3   chr14   21903654       22150317  NM_001163380      RAB2B
4   chr14   21903654       22150317  NM_001303523       TOX4
5   chr14   21903654       22150317  NM_001317107      OR4E1
6   chr14   21903654       22150317     NM_019852     METTL3
7   chr14   21903654       22150317     NM_020920       CHD8
9   chr14   21903654       22150317     NR_111966      SALL2
11  chr14   42125429       42295499  NM_001346175      LRFN5
12   chr5   12455415       12587366     NR_033383  LINC01194,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16363288       16504724  NM_001004067         NOMO3
1   chr16   16363288       16504724  NM_001282511        NPIPA8
2   chr16   16363288       16504724     NR_036140     MIR3179-1
3   chr16   16363288       16504724     NR_036141     MIR3180-1
4   chr16   16363288       16504724     NR_036142     MIR3180-2
5   chr16   16363288       16504724     NR_036447        PKD1P1
6   chr16   16363288       16504724     NR_103772  LOC100288162
7   chr16   16363288       16504724     NR_106766     MIR6511A1
8   chr16   16363288       16504724     NR_106971     MIR6511A4
9   chr16   16363288       16504724     NR_107060     MIR6770-2
10  chr16   16363288       16504724     NR_128713     MIR3670-4
11  chr16   21480625       21613875  NM_001077180        METTL9
13  chr16   21480625       21613875     NR_002594      SLC7A5P2
14  chr16   21480625       21613875     NR_027155        SMG1P3
15  chr16   21480625       21613875     NR_049833     MIR3680-2
16  chr16   21480625       21613875     NR_110930  LOC101927814
17   chr7  109557973      109703732     NR_003024       EIF3IP1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  162794599      162960704     NM_178550    CCDC190
1   chr12   16279791       16390807  NM_001170798    SLC15A5
2   chr14   21680639       22061740  NM_001005465     OR10G3
3   chr14   21680639       22061740  NM_001163380      RAB2B
4   chr14   21680639       22061740  NM_001170629       CHD8
5   chr14   21680639       22061740  NM_001303523       TOX4
6   chr14   21680639       22061740     NM_007192    SUPT16H
7   chr14   21680639       22061740     NM_019852     METTL3
8   chr14   21680639       22061740     NM_020366    RPGRIP1
10  chr14   21680639       22061740     NM_031314     HNRNPC
12  chr14   21680639       22061740     NR_002916     SNORD8
13  chr14   21680639       22061740     NR_003029     SNORD9
14  chr14   21680639       22061740     NR_111966      SALL2
16  chr16   76821141       77051140     NR_039870    MIR4719
17   chr4   69184317       69407116  NM_001031732     YTHDC1
18   chr4   69184317       69407116     NM_001077    UGT2B17
19   chr4   69184317       69407116     NM_014058  TMPRSS11E,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10    7166092        7299286  NM_001018039        SFMBT2
2   chr10    7166092        7299286     NR_132972      SNORD129
3   chr12   16312977       16460231  NM_001170798       SLC15A5
4   chr14   21787493       22121952  NM_001005465        OR10G3
5   chr14   21787493       22121952  NM_001005466        OR10G2
6   chr14   21787493       22121952  NM_001163380         RAB2B
7   chr14   21787493       22121952  NM_001170629          CHD8
8   chr14   21787493       22121952  NM_001303523          TOX4
9   chr14   21787493       22121952     NM_007192       SUPT16H
10  chr14   21787493       22121952     NM_019852        METTL3
11  chr14   21787493       22121952     NM_020366       RPGRIP1
14  chr14   21787493       22121952     NR_002916        SNORD8
15  chr14   21787493       22121952     NR_003029        SNORD9
16  chr14   21787493       22121952     NR_111966         SALL2
18   chr5   17482502       17593952     NR_134270  LOC102723526,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr16   68619138       69001806  NM_001317184       CDH1
1  chr16   68619138       69001806  NM_001317195       CDH3
2  chr16   68619138       69001806     NM_024562     TANGO6
3  chr16   68619138       69001806     NR_106988  MIR7641-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28129692       28283545     NM_000275          OCA2
2   chr16   14806045       15066512  NM_001277323        NPIPA3
4   chr16   14806045       15066512  NM_001277324        NPIPA2
6   chr16   14806045       15066512     NM_006985        NPIPA1
7   chr16   14806045       15066512     NM_014287         NOMO1
8   chr16   14806045       15066512     NR_023387       ABCC6P2
9   chr16   14806045       15066512     NR_036140     MIR3179-1
10  chr16   14806045       15066512     NR_036141     MIR3180-1
11  chr16   14806045       15066512     NR_036142     MIR3180-2
12  chr16   14806045       15066512     NR_103772  LOC100288162
13  chr16   14806045       15066512     NR_106970     MIR6511A3
14  chr16   14806045       15066512     NR_107060     MIR6770-2
15  chr16   14806045       15066512     NR_128713     MIR3670-4
16   chr2  167199067      167299131     NM_002976         SCN7A
17   chr2  167199067      167299131     NM_002977         SCN9A
18   chr7    3781987        5452633  NM_001033518         WIPI2
20   chr7    3781987        5452633  NM_001037165         FOXK1
21   chr7    3781987        5452633  NM_001040661       SLC29A4
22   chr7    3781987        5452633  NM_001079653          SDK1
23   chr7    3781987        5452633  NM_001080495        TNRC18
24   chr7    3781987        5452633  NM_001100600          MMD2
25   chr7    3781987        5452633  NM_001204456          RBAK
26   chr7    3781987        5452633  NM_001204513   RBAK-RBAKDN
27   chr7    3781987        5452633     NM_014855         AP5Z1
28   chr7    3781987        5452633     NM_018059         RADIL
29   chr7    3781987        5452633     NM_020144        PAPOLB
32   chr7    3781987        5452633     NR_015343        RBAKDN
33   chr7    3781987        5452633     NR_015449      RNF216P1
34   chr7    3781987        5452633     NR_034163       ZNF890P
35   chr7    3781987        5452633     NR_039800       MIR4656,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145352916      145503557  NM_001039888      ANKRD34A
1    chr1  145352916      145503557  NM_001277444         NBPF9
2    chr1  145352916      145503557  NM_001278267        NBPF20
3    chr1  145352916      145503557  NM_001302371        NBPF10
4    chr1  145352916      145503557  NM_001313972         TXNIP
6    chr1  145352916      145503557     NM_032305       POLR3GL
7    chr1  145352916      145503557     NM_145277          HFE2
8    chr1  145352916      145503557     NM_153713         LIX1L
9    chr1  145352916      145503557     NR_104217       NBPF25P
10   chr1  145352916      145503557     NR_125967  LOC101928979
11   chr1  189905300      190129192  NM_001317188        BRINP3
13  chr15   28761506       29265128  NM_001130414         APBA2
14  chr15   28761506       29265128  NM_001282468       GOLGA8M
15  chr15   28761506       29265128     NR_026589       WHAMMP2
16  chr15   28761506       29265128     NR_033351       GOLGA8F
17  chr15   28761506       29265128     NR_033353       GOLGA8G
18  chr15   28761506       29265128     NR_036443       HERC2P9
19  chr15   28761506       29265128     NR_036475  LOC100289656
20  chr15   28761506       29265128     NR_037599     PDCD6IPP2
21  chr15   28761506       29265128     NR_047567     GOLGA6L7P
22  chr16   21493778       22067440  NM_001077180        METTL9
23  chr16   21493778       22067440  NM_001161683          OTOA
24  chr16   21493778       22067440  NM_001164579      C16orf52
26  chr16   21493778       22067440  NM_001310148        NPIPB4
27  chr16   21493778       22067440     NM_003366        UQCRC2
28  chr16   21493778       22067440     NM_005849         IGSF6
31  chr16   21493778       22067440     NM_173806         PDZD9
32  chr16   21493778       22067440     NR_002594      SLC7A5P2
33  chr16   21493778       22067440     NR_003370        RRN3P1
34  chr16   21493778       22067440     NR_027155        SMG1P3
35  chr16   21493778       22067440     NR_049833     MIR3680-2
36  chr16   21493778       22067440     NR_110930  LOC101927814
37   chr3     795109         927024     NR_110118     LINC01266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63145442       63418855     NR_047029     LINC00448
3   chr16   16364837       16535439  NM_001004067         NOMO3
4   chr16   16364837       16535439  NM_001282511        NPIPA8
5   chr16   16364837       16535439     NR_036140     MIR3179-1
6   chr16   16364837       16535439     NR_036141     MIR3180-1
7   chr16   16364837       16535439     NR_036142     MIR3180-2
8   chr16   16364837       16535439     NR_036447        PKD1P1
9   chr16   16364837       16535439     NR_103772  LOC100288162
10  chr16   16364837       16535439     NR_106766     MIR6511A1
11  chr16   16364837       16535439     NR_106971     MIR6511A4
12  chr16   16364837       16535439     NR_107060     MIR6770-2
13  chr16   16364837       16535439     NR_128713     MIR3670-4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21848469       21988247  NM_001163380         RAB2B
1   chr14   21848469       21988247  NM_001170629          CHD8
2   chr14   21848469       21988247  NM_001303523          TOX4
3   chr14   21848469       21988247     NM_007192       SUPT16H
4   chr14   21848469       21988247     NM_019852        METTL3
7   chr14   21848469       21988247     NR_002916        SNORD8
8   chr14   21848469       21988247     NR_003029        SNORD9
9   chr15   28680599       29343618  NM_001130414         APBA2
10  chr15   28680599       29343618  NM_001282468       GOLGA8M
11  chr15   28680599       29343618     NR_026589       WHAMMP2
12  chr15   28680599       29343618     NR_033351       GOLGA8F
13  chr15   28680599       29343618     NR_033353       GOLGA8G
14  chr15   28680599       29343618     NR_036443       HERC2P9
15  chr15   28680599       29343618     NR_036475  LOC100289656
16  chr15   28680599       29343618     NR_037599     PDCD6IPP2
17  chr15   28680599       29343618     NR_039734     MIR4509-3
18  chr15   28680599       29343618     NR_047567     GOLGA6L7P
19   chr9   38855381       39324692     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21941140       22252289  NM_001001912     OR4E2
1   chr14   21941140       22252289  NM_001005465    OR10G3
2   chr14   21941140       22252289  NM_001005466    OR10G2
3   chr14   21941140       22252289  NM_001163380     RAB2B
4   chr14   21941140       22252289  NM_001303523      TOX4
5   chr14   21941140       22252289  NM_001317107     OR4E1
6   chr14   21941140       22252289     NM_019852    METTL3
8   chr14   21941140       22252289     NR_111966     SALL2
10  chr17   21226657       21653230  NM_001113434  C17orf51
11  chr17   21226657       21653230  NM_001194958    KCNJ18
12  chr17   21226657       21653230     NM_021012    KCNJ12
13   chr6  116539552      116743564  NM_001322939       DSE
16   chr6  116539552      116743564     NM_003309    TSPYL1
17   chr6  116539552      116743564     NM_021648    TSPYL4
18   chr6  116539552      116743564     NM_152729    NT5DC1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21781655       21926784  NM_001170629          CHD8
1   chr14   21781655       21926784     NM_007192       SUPT16H
2   chr14   21781655       21926784     NM_020366       RPGRIP1
4   chr14   21781655       21926784     NR_002916        SNORD8
5   chr14   21781655       21926784     NR_003029        SNORD9
6   chr16   16422083       16757256  NM_001282511        NPIPA8
7   chr16   16422083       16757256     NR_036447        PKD1P1
8   chr16   16422083       16757256     NR_106971     MIR6511A4
9   chr16   16422083       16757256     NR_107060     MIR6770-2
10  chr20   14812745       15034323     NM_080676       MACROD2
11  chr20   14812745       15034323     NR_037841   MACROD2-AS1
13   chr3  163663269      164418344     NR_031665       MIR1263
14   chr7   57230157       57341607     NR_030766       GUSBP10
15   chr7   57230157       57341607     NR_136269  LOC105375297
16   chr7  110341657      110542927  NM_001244606        IMMP2L
18   chr7  133246524      134281475  NM_001080538       AKR1B15
19   chr7  133246524      134281475  NM_001346142        AKR1B1
21   chr7  133246524      134281475     NM_020299       AKR1B10
22   chr7  133246524      134281475     NM_021807         EXOC4
23   chr7  133246524      134281475     NM_032826       SLC35B4
24   chr7  133246524      134281475     NM_144648         LRGUK
25   chr7  133246524      134281475     NR_120513  LOC101928861
26   chr9   39028553       39130011     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   88925127       89037955  NM_001099338        NUTM2A
1   chr10   88925127       89037955  NM_001330112        FAM35A
3   chr10   88925127       89037955     NR_024397    NUTM2A-AS1
4   chr14   21890133       22555954  NM_001001912         OR4E2
5   chr14   21890133       22555954  NM_001005465        OR10G3
6   chr14   21890133       22555954  NM_001005466        OR10G2
7   chr14   21890133       22555954  NM_001163380         RAB2B
8   chr14   21890133       22555954  NM_001170629          CHD8
9   chr14   21890133       22555954  NM_001303523          TOX4
10  chr14   21890133       22555954  NM_001317107         OR4E1
11  chr14   21890133       22555954     NM_019852        METTL3
14  chr14   21890133       22555954     NR_111966         SALL2
16   chr2   75838176       76335736  NM_001201334         GCFC2
19   chr2   75838176       76335736     NM_014763        MRPL19
20   chr2  194791852      195288889     NR_110222  LOC101927406
21   chr6   90268695       90385288  NM_001242809        ANKRD6
24   chr6   90268695       90385288     NM_014611          MDN1
25   chr6   90268695       90385288     NM_020466         LYRM2
27   chr6   90268695       90385288     NR_111915  LOC101929057
28   chr7   21422899       21523058  NM_001326542           SP4
29   chr7   21422899       21523058     NR_031594       MIR1183
31   chr9   39040623       39765954  NM_001085452     SPATA31A1
32   chr9   39040623       39765954     NM_033655       CNTNAP3
33   chr9   39040623       39765954     NR_003528       ZNF658B
34   chr9   39040623       39765954     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  144024054      144302179  NM_001278267        NBPF20
1    chr1  144024054      144302179     NR_024511     LINC00623
3    chr1  144024054      144302179     NR_111953     LINC00869
4   chr10  135196322      135415546     NM_000773        CYP2E1
5   chr10  135196322      135415546  NM_001012508          SPRN
6   chr10  135196322      135415546  NM_001143763         SYCE1
9   chr10  135196322      135415546     NM_138384          MTG1
10  chr10  135196322      135415546     NR_002934        SCART1
11  chr10  135196322      135415546     NR_033789        SPRNP1
12  chr10  135196322      135415546     NR_109766          PAOX
13  chr11   67175431       67305689  NM_001018070        CORO1B
14  chr11   67175431       67305689  NM_001078650       TMEM134
15  chr11   67175431       67305689  NM_001166222        CARNS1
16  chr11   67175431       67305689  NM_001256508      TBC1D10C
17  chr11   67175431       67305689  NM_001300895         CABP4
19  chr11   67175431       67305689  NM_001302959           AIP
20  chr11   67175431       67305689  NM_001318496         CABP2
21  chr11   67175431       67305689     NM_003952       RPS6KB2
23  chr11   67175431       67305689     NM_004910       PITPNM1
24  chr11   67175431       67305689     NM_005608       PTPRCAP
25  chr11   67175431       67305689     NM_005851       CDK2AP2
28  chr11   67175431       67305689     NM_206997        GPR152
31  chr11   67175431       67305689     NR_106810       MIR6752
32  chr18   36509452       37807974     NR_024391      MIR924HG
33  chr18   36509452       37807974     NR_030628        MIR924
34  chr18   36509452       37807974     NR_049847     MIR5583-1
35  chr18   36509452       37807974     NR_049848     MIR5583-2
36  chr18   36509452       37807974     NR_110791     LINC01477
37   chr5   63764461       63872692  NM_001029875        RGS7BP
39   chr6   92035473       93659429     NR_039786       MIR4643
40   chr6   92035473       93659429     NR_104154         CASC6
41   chr7  132756848      132881863  NM_001317178        CHCHD3
43   chr7  132756848      132881863     NR_133931  LOC105375512,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21732595       21891073  NM_001170629          CHD8
1   chr14   21732595       21891073     NM_007192       SUPT16H
2   chr14   21732595       21891073     NM_020366       RPGRIP1
4   chr14   21732595       21891073     NM_031314        HNRNPC
5   chr14   21732595       21891073     NR_002916        SNORD8
6   chr14   21732595       21891073     NR_003029        SNORD9
7    chr5  167352241      167853773  NM_001080428         TENM2
9    chr5  167352241      167853773  NM_001161661          WWC1
10   chr5  167352241      167853773     NR_109894  CTB-178M22.2
11   chr8  138051378      139228799     NM_015912       FAM135B
12   chr8  138051378      139228799     NR_125428  LOC101927915,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143714180      145090577  NM_001002810       PDE4DIP
3    chr1  143714180      145090577  NM_001123068       PPIAL4G
4    chr1  143714180      145090577  NM_001135789       PPIAL4C
9    chr1  143714180      145090577  NM_001277444         NBPF9
10   chr1  143714180      145090577  NM_001278267        NBPF20
11   chr1  143714180      145090577  NM_001287385        FAM72C
12   chr1  143714180      145090577  NM_001345942        FAM72D
17   chr1  143714180      145090577     NR_003242        PFN1P2
18   chr1  143714180      145090577     NR_024511     LINC00623
20   chr1  143714180      145090577     NR_102405         NBPF8
21   chr1  143714180      145090577     NR_104014     LINC01138
22   chr1  143714180      145090577     NR_111930  LOC100132057
23   chr1  143714180      145090577     NR_111953     LINC00869
25  chr16    8638777        9516232     NM_000303          PMM2
26  chr16    8638777        9516232     NM_000663          ABAT
27  chr16    8638777        9516232  NM_001042476       CARHSP1
33  chr16    8638777        9516232  NM_001286457          USP7
36  chr16    8638777        9516232     NM_014117      C16orf72
38  chr16    8638777        9516232     NM_015421       TMEM186
40  chr16    8638777        9516232     NM_024109       METTL22
41  chr16    8638777        9516232     NR_135195  LOC101927009
43  chr22   32332722       32434514  NM_001302819      C22orf24
44  chr22   32332722       32434514     NM_003405         YWHAH
46   chr4   16240956       16372962     NR_027696     TAPT1-AS1
47   chr6  162318400      162450694     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  243526167      243801479  NM_001206729          AKT3
2    chr1  243526167      243801479     NM_006642       SDCCAG8
4    chr1  245044314      245287955  NM_001143943        EFCAB2
7    chr1  245044314      245287955     NR_111907  LOC101928068
8   chr10   27601051       27803880  NM_001034842        PTCHD3
9   chr10   27601051       27803880  NM_001256411         RAB18
10  chr10   27601051       27803880     NR_138082       ARMC4P1
11  chr14   21947511       22048267  NM_001005465        OR10G3
12  chr14   21947511       22048267  NM_001303523          TOX4
13  chr14   21947511       22048267     NM_019852        METTL3
14  chr14   21947511       22048267     NR_111966         SALL2
16  chr20   14621420       15127004     NM_080676       MACROD2
17  chr20   14621420       15127004     NR_037841   MACROD2-AS1
19   chr3   85443144       87000830  NM_001167675         CADM2
21   chr3   85443144       87000830  NM_001320494         VGLL3
23   chr3   85443144       87000830     NR_046752     CADM2-AS2
24   chr3   85443144       87000830     NR_135563  LOC101927494
25   chr3  116112350      116218254  NM_001318915         LSAMP,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21800934       21942319  NM_001163380         RAB2B
1   chr14   21800934       21942319  NM_001170629          CHD8
2   chr14   21800934       21942319     NM_007192       SUPT16H
3   chr14   21800934       21942319     NM_020366       RPGRIP1
6   chr14   21800934       21942319     NR_002916        SNORD8
7   chr14   21800934       21942319     NR_003029        SNORD9
8    chr7   80087040       81405552     NM_000072          CD36
9    chr7   80087040       81405552     NM_000601           HGF
14   chr7   80087040       81405552  NM_001102386         GNAT3
20   chr7   80087040       81405552     NM_006379        SEMA3C
21   chr7   80087040       81405552     NR_126025  LOC100128317
23   chr7   80087040       81405552     NR_136264  LOC105369146,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  243556911      243716269  NM_001206729          AKT3
2    chr1  243556911      243716269     NM_006642       SDCCAG8
4   chr15   28459938       28701570     NM_004667         HERC2
5   chr15   28459938       28701570     NR_033351       GOLGA8F
6   chr15   28459938       28701570     NR_033353       GOLGA8G
7   chr15   28459938       28701570     NR_039734     MIR4509-3
8   chr15   28702236       29158445  NM_001282468       GOLGA8M
9   chr15   28702236       29158445     NR_026589       WHAMMP2
10  chr15   28702236       29158445     NR_033351       GOLGA8F
11  chr15   28702236       29158445     NR_033353       GOLGA8G
12  chr15   28702236       29158445     NR_036443       HERC2P9
13  chr15   28702236       29158445     NR_036475  LOC100289656
14  chr15   28702236       29158445     NR_037599     PDCD6IPP2
15  chr15   28702236       29158445     NR_039734     MIR4509-3
16  chr15   28702236       29158445     NR_047567     GOLGA6L7P
17   chr3  189599421      189945595  NM_001134418          P3H2
18   chr3  189599421      189945595  NM_001329148          TP63
22   chr3  189599421      189945595     NR_126419      P3H2-AS1
23   chr4   69304041       69606134     NM_001076       UGT2B15
24   chr4   69304041       69606134     NM_001077       UGT2B17
25   chr4   69304041       69606134     NM_014058     TMPRSS11E
26   chr5     100526         260462  NM_001080478       LRRC14B
27   chr5     100526         260462     NM_004168          SDHA
28   chr5     100526         260462     NM_052909      PLEKHG4B
29   chr5     100526         260462     NM_145265       CCDC127
30   chr7   75734293       75932947  NM_001110199         SRRM3
31   chr7   75734293       75932947     NM_001540         HSPB1
32   chr7   75734293       75932947     NR_135079       GTF2IP7,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14850120       15058034     NM_080676      MACROD2
1  chr20   14850120       15058034     NR_037841  MACROD2-AS1
3   chr7  110611861      110778237  NM_001099658        LRRN3
4   chr7  110611861      110778237  NM_001244606       IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245038508      245147816  NM_001143943        EFCAB2
3    chr1  245038508      245147816     NR_111907  LOC101928068
4   chr11   67231495       67369228     NM_000852         GSTP1
5   chr11   67231495       67369228  NM_001078650       TMEM134
6   chr11   67231495       67369228  NM_001302959           AIP
7   chr11   67231495       67369228  NM_001318496         CABP2
9   chr11   67231495       67369228     NM_004910       PITPNM1
10  chr11   67231495       67369228     NM_005851       CDK2AP2
12  chr11   67231495       67369228     NR_106810       MIR6752
13  chr14   21684261       21809600     NM_020366       RPGRIP1
14  chr14   21684261       21809600     NM_031314        HNRNPC
15  chr15   21002431       21211787  NM_001277303        POTEB2
16  chr15   21002431       21211787     NM_207355        POTEB3
17  chr15   21002431       21211787     NR_028506         NF1P2
18  chr15   21002431       21211787     NR_036062     MIR3118-2
19  chr15   21002431       21211787     NR_040094     LINC01193
20  chr15   21002431       21211787     NR_049895     MIR5701-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21882724       21993471  NM_001163380         RAB2B
1   chr14   21882724       21993471  NM_001170629          CHD8
2   chr14   21882724       21993471  NM_001303523          TOX4
3   chr14   21882724       21993471     NM_019852        METTL3
6   chr14   21882724       21993471     NR_111966         SALL2
8   chr15   52776117       52903107  NM_001142495         MYO5A
9   chr15   52776117       52903107  NM_001286495       FAM214A
10  chr15   52776117       52903107  NM_001306191        ARPP19
15  chr17    3309283        3543968     NM_000049          ASPA
17  chr17    3309283        3543968  NM_001170696       SPATA22
22  chr17    3309283        3543968     NM_003554         OR1E2
23  chr17    3309283        3543968     NM_004937          CTNS
24  chr17    3309283        3543968     NM_012373         OR3A3
25  chr17    3309283        3543968     NM_013276          SHPK
26  chr17    3309283        3543968     NM_018727         TRPV1
31  chr17    3309283        3543968     NM_145068         TRPV3
32  chr21   23013122       23136383     NR_038872     LINC00317
33  chr21   23013122       23136383     NR_109958     LINC01425
34   chr3  146579352      146749390     NR_135560  LOC101927866
35   chr4  189213324      189478768     NR_033869     LINC01060
36   chr7  124925876      125041087     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21916940       22329538  NM_001001912      OR4E2
1   chr14   21916940       22329538  NM_001005465     OR10G3
2   chr14   21916940       22329538  NM_001005466     OR10G2
3   chr14   21916940       22329538  NM_001163380      RAB2B
4   chr14   21916940       22329538  NM_001303523       TOX4
5   chr14   21916940       22329538  NM_001317107      OR4E1
6   chr14   21916940       22329538     NM_019852     METTL3
8   chr14   21916940       22329538     NR_111966      SALL2
10  chr22   19874646       19988334     NM_000754       COMT
13  chr22   19874646       19988334  NM_001282512     TXNRD2
14  chr22   19874646       19988334     NM_001670      ARVCF
17  chr22   19874646       19988334     NR_039918    MIR4761
18   chr3   17291166       17434554  NM_001134381     TBC1D5
20   chr9    2523545        2920517     NM_003383      VLDLR
21   chr9    2523545        2920517     NM_014878       PUM3
22   chr9    2523545        2920517     NM_133497      KCNV2
23   chr9    2523545        2920517     NR_015375  VLDLR-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   80949177       81057392  NM_001145026         PTPRQ
1   chr16   10536625       10662065  NM_001256160       ATF7IP2
2   chr16   10536625       10662065     NM_001424          EMP2
4   chr16   18360075       18650109  NM_001004060         NOMO2
5   chr16   18360075       18650109  NM_001282511        NPIPA8
6   chr16   18360075       18650109     NR_003569       ABCC6P1
7   chr16   18360075       18650109     NR_036140     MIR3179-1
8   chr16   18360075       18650109     NR_036142     MIR3180-2
9   chr16   18360075       18650109     NR_036144     MIR3180-3
10  chr16   18360075       18650109     NR_037442     MIR3670-1
11  chr16   18360075       18650109     NR_103772  LOC100288162
12  chr16   18360075       18650109     NR_106971     MIR6511A4
13  chr16   18360075       18650109     NR_107060     MIR6770-2
14   chr4  189462749      189578588     NR_033869     LINC01060
15   chr7   75813295       76001034  NM_001110199         SRRM3
16   chr7   75813295       76001034     NM_001540         HSPB1
17   chr7   75813295       76001034     NM_012479         YWHAG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143494474      143708039     NR_106967       MIR6077
1    chr1  143494474      143708039     NR_111930  LOC100132057
2   chr10   27621413       28327127  NM_001034842        PTCHD3
3   chr10   27621413       28327127  NM_001242702           MKX
4   chr10   27621413       28327127  NM_001256411         RAB18
5   chr10   27621413       28327127  NM_001290020         ARMC4
9   chr10   27621413       28327127     NR_121652       MKX-AS1
10  chr10   27621413       28327127     NR_138082       ARMC4P1
11  chr16   16452932       16568143  NM_001282511        NPIPA8
12  chr16   16452932       16568143     NR_106971     MIR6511A4
13  chr20   14911396       15111914     NM_080676       MACROD2
14   chr7  110608978      110914062  NM_001099658         LRRN3
15   chr7  110608978      110914062  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr22   17110424       17531881  NM_001037814               GAB4
1   chr22   17110424       17531881     NM_175878               XKR3
2   chr22   17110424       17531881     NR_001591             TPTEP1
3   chr22   17110424       17531881     NR_003607            HSFY1P1
4   chr22   17110424       17531881     NR_015352              CECR7
5   chr22   17110424       17531881     NR_040115  ANKRD62P1-PARP4P3
6   chr22   17110424       17531881     NR_134584       LOC101929350
7    chr4   69264581       69470901     NM_001077            UGT2B17
8    chr4   69264581       69470901     NM_014058          TMPRSS11E
9    chr9   41921072       42022802     NR_003670             FGF7P3
10   chr9   41921072       42022802     NR_015363              GLIDR
13   chr9   41921072       42022802     NR_126048       LOC102724238
14   chr9   41921072       42022802     NR_126049          LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21823711       22026617  NM_001163380         RAB2B
1   chr14   21823711       22026617  NM_001170629          CHD8
2   chr14   21823711       22026617  NM_001303523          TOX4
3   chr14   21823711       22026617     NM_007192       SUPT16H
4   chr14   21823711       22026617     NM_019852        METTL3
7   chr14   21823711       22026617     NR_002916        SNORD8
8   chr14   21823711       22026617     NR_003029        SNORD9
9   chr14   21823711       22026617     NR_111966         SALL2
11   chr2   69593186       69696372  NM_001244710         GFPT1
12   chr2   69593186       69696372     NM_014911          AAK1
13   chr2   69593186       69696372     NM_015700          NFU1
14   chr2   97191931       98785993     NM_001079         ZAP70
15   chr2   97191931       98785993  NM_001115016        KANSL3
16   chr2   97191931       98785993  NM_001122646       FAM178B
17   chr2   97191931       98785993  NM_001164315       ANKRD36
19   chr2   97191931       98785993  NM_001293083        FER1L5
20   chr2   97191931       98785993  NM_001319085        ARID5A
22   chr2   97191931       98785993  NM_001320849        FAHD2B
23   chr2   97191931       98785993  NM_001322354        LMAN2L
24   chr2   97191931       98785993  NM_001345864         VWA3B
25   chr2   97191931       98785993     NM_001862         COX5B
26   chr2   97191931       98785993     NM_005735        ACTR1B
27   chr2   97191931       98785993     NM_015348       TMEM131
28   chr2   97191931       98785993     NM_016466       ANKRD39
30   chr2   97191931       98785993     NM_017623         CNNM3
31   chr2   97191931       98785993     NM_017789        SEMA4C
32   chr2   97191931       98785993     NM_020184         CNNM4
33   chr2   97191931       98785993     NM_025190      ANKRD36B
36   chr2   97191931       98785993     NM_144994       ANKRD23
39   chr2   97191931       98785993     NR_036074       MIR3127
40   chr2   97191931       98785993     NR_038386     LINC01125
42   chr2   97191931       98785993     NR_103732  LOC100506076
46   chr2   97191931       98785993     NR_110209  LOC101927053
47   chr2   97191931       98785993     NR_130704  LOC100506123
49   chr2   97191931       98785993     NR_135564  LOC105373496
51   chr2  110137520      110368299  NM_001099289        SH3RF3
52   chr2  110137520      110368299  NM_001321504        SEPT10
54   chr2  133039079      133155481  NM_001304449        ZNF806
55   chr2  133039079      133155481     NR_135203       FAM201B
56   chr4   69055791       70345454  NM_001031732        YTHDC1
57   chr4   69055791       70345454     NM_001073       UGT2B11
58   chr4   69055791       70345454     NM_001075       UGT2B10
60   chr4   69055791       70345454     NM_001076       UGT2B15
61   chr4   69055791       70345454     NM_001077       UGT2B17
62   chr4   69055791       70345454  NM_001207004       UGT2B28
63   chr4   69055791       70345454  NM_001330719        UGT2B7
64   chr4   69055791       70345454     NM_014058     TMPRSS11E
65   chr4   69055791       70345454     NM_024743        UGT2A3
66   chr4   69055791       70345454     NM_182502     TMPRSS11B
67   chr4   69055791       70345454     NR_015446        FTLP10
68   chr4   69055791       70345454     NR_104048   TMPRSS11BNL
69   chr4   69055791       70345454     NR_136191  LOC105377267,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21903297       22053640  NM_001005465    OR10G3
1  chr14   21903297       22053640  NM_001163380     RAB2B
2  chr14   21903297       22053640  NM_001303523      TOX4
3  chr14   21903297       22053640     NM_019852    METTL3
4  chr14   21903297       22053640     NM_020920      CHD8
6  chr14   21903297       22053640     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   54193429       54420614     NR_120641  LINC01468
2   chr13   63001180       63672709     NR_047029  LINC00448
5   chr14   21765134       22169416  NM_001001912      OR4E2
6   chr14   21765134       22169416  NM_001005465     OR10G3
7   chr14   21765134       22169416  NM_001005466     OR10G2
8   chr14   21765134       22169416  NM_001163380      RAB2B
9   chr14   21765134       22169416  NM_001170629       CHD8
10  chr14   21765134       22169416  NM_001303523       TOX4
11  chr14   21765134       22169416  NM_001317107      OR4E1
12  chr14   21765134       22169416     NM_007192    SUPT16H
13  chr14   21765134       22169416     NM_019852     METTL3
14  chr14   21765134       22169416     NM_020366    RPGRIP1
17  chr14   21765134       22169416     NR_002916     SNORD8
18  chr14   21765134       22169416     NR_003029     SNORD9
19  chr14   21765134       22169416     NR_111966      SALL2
21  chr16   61775560       61881179     NM_001796       CDH8
22   chr6  162533729      162659342     NM_013988      PARK2
23   chr7  123411458      123527621     NM_012269      HYAL4
24   chr7  123411458      123527621     NR_002731     HYALP1
25   chr7  123411458      123527621     NR_125730     RNU6-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18342047       18452016  NM_001282511        NPIPA8
1   chr16   18342047       18452016     NR_103772  LOC100288162
2   chr16   18342047       18452016     NR_106971     MIR6511A4
3   chr21   30005865       30434702  NM_001320724        RWDD2B
4   chr21   30005865       30434702  NM_001320766          LTN1
5   chr21   30005865       30434702     NM_006447         USP16
6   chr21   30005865       30434702     NM_006585          CCT8
7   chr21   30005865       30434702     NM_013240        N6AMT1
11   chr5  125637215      125738673  NM_001146319        GRAMD3
12   chr7    8652118        8885492     NM_152745         NXPH1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   22358216       22517625     NR_047040  LINC00424
1   chr16   29552201       29656885     NR_049833  MIR3680-2
2   chr16   29552201       29656885     NR_135305     SMG1P2
4    chr4   66499863       66700171  NM_001281766      EPHA5
7    chr4   66499863       66700171     NR_034138  EPHA5-AS1
8    chr4  169256887      169389763  NM_001012967     DDX60L
10   chr7  110751511      110874362  NM_001099658      LRRN3
11   chr7  110751511      110874362  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0   chr22   17155541       17744619  NM_001037814               GAB4
1   chr22   17155541       17744619  NM_001163079              CECR6
2   chr22   17155541       17744619  NM_001282227              CECR1
4   chr22   17155541       17744619  NM_001289905             IL17RA
5   chr22   17155541       17744619     NM_017829              CECR5
8   chr22   17155541       17744619     NM_175878               XKR3
10  chr22   17155541       17744619     NR_003607            HSFY1P1
11  chr22   17155541       17744619     NR_015352              CECR7
12  chr22   17155541       17744619     NR_024482          CECR5-AS1
13  chr22   17155541       17744619     NR_038398              CECR3
14  chr22   17155541       17744619     NR_040115  ANKRD62P1-PARP4P3
15  chr22   17155541       17744619     NR_103793       LOC100996342
16  chr22   17155541       17744619     NR_134584       LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   86275373       86536971     NM_032229       SLITRK6
1   chr14   21721711       21848778     NM_007192       SUPT16H
2   chr14   21721711       21848778     NM_020366       RPGRIP1
3   chr14   21721711       21848778     NM_031314        HNRNPC
4    chr2  108793683      109022106  NM_001008743       SULT1C3
5    chr2  108793683      109022106     NM_001056       SULT1C2
7    chr2  108793683      109022106     NM_006588       SULT1C4
8    chr2  108793683      109022106     NR_037191     SULT1C2P1
9    chr2  108793683      109022106     NR_131251     LINC01594
10   chr2  212990348      213709505  NM_001042599         ERBB4
11   chr2  212990348      213709505     NR_031643      MIR548F2
12   chr2  212990348      213709505     NR_131941  LOC102725079
14  chr20   14736063       14847513     NM_080676       MACROD2
15   chr5  175440036      175540293  NM_001265615       FAM153B
16   chr5  175440036      175540293     NR_103794  LOC100996385
17   chr7   75743271       75998671  NM_001110199         SRRM3
18   chr7   75743271       75998671     NM_001540         HSPB1
19   chr7   75743271       75998671     NM_012479         YWHAG,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21797547       23546068  NM_001001912         OR4E2
1   chr14   21797547       23546068  NM_001005465        OR10G3
2   chr14   21797547       23546068  NM_001005466        OR10G2
3   chr14   21797547       23546068  NM_001039619         PRMT5
4   chr14   21797547       23546068  NM_001099780        PSMB11
5   chr14   21797547       23546068  NM_001126105        SLC7A7
7   chr14   21797547       23546068  NM_001130706      C14orf93
8   chr14   21797547       23546068  NM_001130725         PSMB5
10  chr14   21797547       23546068  NM_001163380         RAB2B
11  chr14   21797547       23546068  NM_001164815         ACIN1
13  chr14   21797547       23546068  NM_001170629          CHD8
15  chr14   21797547       23546068  NM_001289097         AJUBA
16  chr14   21797547       23546068  NM_001303523          TOX4
17  chr14   21797547       23546068  NM_001317107         OR4E1
18  chr14   21797547       23546068  NM_001318870        MRPL52
19  chr14   21797547       23546068  NM_001329226         LRP10
20  chr14   21797547       23546068     NM_001344          DAD1
21  chr14   21797547       23546068     NM_004995         MMP14
22  chr14   21797547       23546068     NM_005015         OXA1L
23  chr14   21797547       23546068     NM_007192       SUPT16H
24  chr14   21797547       23546068     NM_017815         HAUS4
25  chr14   21797547       23546068     NM_018107         RBM23
26  chr14   21797547       23546068     NM_019852        METTL3
27  chr14   21797547       23546068     NM_020366       RPGRIP1
29  chr14   21797547       23546068     NM_022060         ABHD4
30  chr14   21797547       23546068     NM_022478         CDH24
33  chr14   21797547       23546068     NM_173527          REM2
35  chr14   21797547       23546068     NR_002916        SNORD8
36  chr14   21797547       23546068     NR_003029        SNORD9
37  chr14   21797547       23546068     NR_039856       MIR4707
39  chr14   21797547       23546068     NR_110002  LOC101926933
40  chr14   21797547       23546068     NR_111966         SALL2
42  chr14   21797547       23546068     NR_120599     PRMT5-AS1
43  chr15   28513826       28625196     NM_004667         HERC2
44  chr15   28513826       28625196     NR_033351       GOLGA8F
45  chr15   28513826       28625196     NR_033353       GOLGA8G
46   chr4   68966223       69106723     NM_182502     TMPRSS11B
47   chr4   68966223       69106723     NM_207407     TMPRSS11F
48   chr4   68966223       69106723     NR_015446        FTLP10
49   chr4   68966223       69106723     NR_104048   TMPRSS11BNL
50   chr7  110630844      110790235  NM_001099658         LRRN3
51   chr7  110630844      110790235  NM_001244606        IMMP2L
53   chr9   41554771       41666283     NR_003528       ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  134184549      134334123  NM_001080407        GLB1L3
1   chr11  134184549      134334123     NM_054025        B3GAT1
2   chr11  134184549      134334123     NM_138342        GLB1L2
3   chr11  134184549      134334123     NR_033852     LOC283177
4    chr2  186270229      187395661     NM_018471        ZC3H15
5    chr2  186270229      187395661     NM_173651         FSIP2
6    chr2  186270229      187395661     NR_110214  LOC101927196
9    chr2  186270229      187395661     NR_110218     LINC01473
10   chr2  186270229      187395661     NR_144453     FSIP2-AS1
12   chr3    3798545        3922301  NM_001324189         LRRN1
13   chr4   71393391       71546344  NM_001286731          AMTN
14   chr4   71393391       71546344     NM_016519          AMBN
15   chr4   71393391       71546344     NM_031889          ENAM
16   chr4   71393391       71546344     NM_144646        JCHAIN
17   chr5  117408579      118881257     NM_000414       HSD17B4
18   chr5  117408579      118881257  NM_001286813       TNFAIP8
21   chr5  117408579      118881257  NM_001290322         DMXL1
23   chr5  117408579      118881257  NM_001308081         DTWD2
26   chr5  117408579      118881257     NR_049892       MIR5706
27   chr5  117408579      118881257     NR_104609       HNCAT21
28   chr5  117408579      118881257     NR_104610        HRAT56
29   chr5  117408579      118881257     NR_104997  LOC102467224
30   chr5  117408579      118881257     NR_104998  LOC102467225
31   chr5  117408579      118881257     NR_128710     MIR1244-4
32   chr5  117408579      118881257     NR_134249  LOC105379143
34   chr7  108456397      108702930  NM_001024607       C7orf66,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  135287918      135403716     NM_000773        CYP2E1
1   chr10  135287918      135403716  NM_001143763         SYCE1
4   chr10  135287918      135403716     NR_033789        SPRNP1
5   chr15   28235943       30898148     NM_000275          OCA2
6   chr15   28235943       30898148  NM_001130414         APBA2
7   chr15   28235943       30898148  NM_001282468       GOLGA8M
8   chr15   28235943       30898148  NM_001282472       GOLGA8J
9   chr15   28235943       30898148  NM_001282484       GOLGA8R
10  chr15   28235943       30898148  NM_001282490       GOLGA8H
12  chr15   28235943       30898148  NM_001301025          TJP1
15  chr15   28235943       30898148     NM_004667         HERC2
16  chr15   28235943       30898148     NM_015307      FAM189A1
17  chr15   28235943       30898148     NM_138704        NSMCE3
18  chr15   28235943       30898148     NM_139320      CHRFAM7A
19  chr15   28235943       30898148     NR_026589       WHAMMP2
20  chr15   28235943       30898148     NR_026771  DKFZP434L187
21  chr15   28235943       30898148     NR_026858        ULK4P1
22  chr15   28235943       30898148     NR_026859        ULK4P3
23  chr15   28235943       30898148     NR_033351       GOLGA8F
25  chr15   28235943       30898148     NR_033353       GOLGA8G
27  chr15   28235943       30898148     NR_033933       GOLGA8T
28  chr15   28235943       30898148     NR_036443       HERC2P9
29  chr15   28235943       30898148     NR_036475  LOC100289656
30  chr15   28235943       30898148     NR_037599     PDCD6IPP2
31  chr15   28235943       30898148     NR_039734     MIR4509-3
33  chr15   28235943       30898148     NR_047567     GOLGA6L7P
34  chr15   28235943       30898148     NR_135221  LOC100130111
35  chr21   30846283       31158619     NM_000830         GRIK1
39  chr21   30846283       31158619     NR_027021     GRIK1-AS1
40  chr21   30846283       31158619     NR_033368     GRIK1-AS2
41   chr5   99327790       99806373     NR_027503  LOC100133050
42   chr6  162701178      163267051  NM_001080378         PACRG
44   chr6  162701178      163267051     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name   gene_name
0   chr19   47854559       47977410  NM_001009813       MEIS3
3   chr19   47854559       47977410     NM_014681       DHX34
4   chr19   47854559       47977410     NM_015063      SLC8A2
5    chr3   37789776       39107575     NM_000335       SCN5A
6    chr3   37789776       39107575     NM_001106      ACVR2B
8    chr3   37789776       39107575  NM_001172567       MYD88
9    chr3   37789776       39107575  NM_001287223      SCN11A
10   chr3   37789776       39107575  NM_001293306      SCN10A
11   chr3   37789776       39107575  NM_001318956        EXOG
12   chr3   37789776       39107575  NM_001320033    SLC22A14
13   chr3   37789776       39107575  NM_001346226       WDR48
15   chr3   37789776       39107575     NM_002207       ITGA9
16   chr3   37789776       39107575     NM_004256    SLC22A13
18   chr3   37789776       39107575     NM_005108        XYLB
19   chr3   37789776       39107575     NM_005109       OXSR1
20   chr3   37789776       39107575     NM_005808      CTDSPL
21   chr3   37789776       39107575     NM_006225       PLCD1
22   chr3   37789776       39107575     NM_007337       DLEC1
24   chr3   37789776       39107575     NM_015873        VILL
25   chr3   37789776       39107575     NR_024024       ACAA1
27   chr3   37789776       39107575     NR_028389  ACVR2B-AS1
28   chr3   37789776       39107575     NR_029499     MIR26A1
29   chr3   37789776       39107575     NR_110531   ITGA9-AS1
31   chr6  129236422      129336991  NM_001079823       LAMA2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30291360       30438304  NM_001282472       GOLGA8J
1   chr15   30291360       30438304     NR_026859        ULK4P3
2   chr15   30291360       30438304     NR_033933       GOLGA8T
3   chr15   98240665       98579402     NM_183376        ARRDC4
4   chr15   98240665       98579402     NR_024172     LINC00923
5   chr16   16354516       16464328  NM_001004067         NOMO3
6   chr16   16354516       16464328     NR_036140     MIR3179-1
7   chr16   16354516       16464328     NR_036141     MIR3180-1
8   chr16   16354516       16464328     NR_036142     MIR3180-2
9   chr16   16354516       16464328     NR_036447        PKD1P1
10  chr16   16354516       16464328     NR_103772  LOC100288162
11  chr16   16354516       16464328     NR_106766     MIR6511A1
12  chr16   16354516       16464328     NR_106971     MIR6511A4
13  chr16   16354516       16464328     NR_107060     MIR6770-2
14  chr16   16354516       16464328     NR_128713     MIR3670-4
15   chr7  111298963      111703758     NM_014705         DOCK4
16   chr7  111298963      111703758     NR_103806     DOCK4-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr13   40362736       40623203  NM_001145079       COG6
1   chr14   21894956       22628918  NM_001001912      OR4E2
2   chr14   21894956       22628918  NM_001005465     OR10G3
3   chr14   21894956       22628918  NM_001005466     OR10G2
4   chr14   21894956       22628918  NM_001163380      RAB2B
5   chr14   21894956       22628918  NM_001170629       CHD8
6   chr14   21894956       22628918  NM_001303523       TOX4
7   chr14   21894956       22628918  NM_001317107      OR4E1
8   chr14   21894956       22628918     NM_019852     METTL3
11  chr14   21894956       22628918     NR_111966      SALL2
13   chr2   51189371       51309830  NM_001330079      NRXN1
16   chr2   51189371       51309830     NR_135237  LOC730100
17   chr7  110529001      110713351  NM_001244606     IMMP2L
19   chr9   67144431       67276400     NR_002817     AQP7P1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21735857       22052524  NM_001005465    OR10G3
1   chr14   21735857       22052524  NM_001163380     RAB2B
2   chr14   21735857       22052524  NM_001170629      CHD8
3   chr14   21735857       22052524  NM_001303523      TOX4
4   chr14   21735857       22052524     NM_007192   SUPT16H
5   chr14   21735857       22052524     NM_019852    METTL3
6   chr14   21735857       22052524     NM_020366   RPGRIP1
8   chr14   21735857       22052524     NM_031314    HNRNPC
10  chr14   21735857       22052524     NR_002916    SNORD8
11  chr14   21735857       22052524     NR_003029    SNORD9
12  chr14   21735857       22052524     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48411977       48546462  NM_001005512        OR4A47
1   chr15   87196196       87607938     NM_152336         AGBL1
2   chr15   87196196       87607938     NR_135682  LOC105370954
3   chr15   87196196       87607938     NR_135683  LOC102724452
4   chr16   21848159       22019581  NM_001164579      C16orf52
5   chr16   21848159       22019581  NM_001310148        NPIPB4
6   chr16   21848159       22019581     NM_003366        UQCRC2
7   chr16   21848159       22019581     NM_173806         PDZD9
8    chr4    9038378        9292389  NM_001256852      USP17L10
9    chr4    9038378        9292389  NM_001256853      USP17L12
11   chr4    9038378        9292389  NM_001256854      USP17L11
14   chr4    9038378        9292389  NM_001256855      USP17L13
15   chr4    9038378        9292389  NM_001256857      USP17L17
16   chr4    9038378        9292389  NM_001256860      USP17L19
17   chr4    9038378        9292389  NM_001256861      USP17L20
18   chr4    9038378        9292389  NM_001256894      USP17L15,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21756793       22114275  NM_001005465        OR10G3
1   chr14   21756793       22114275  NM_001005466        OR10G2
2   chr14   21756793       22114275  NM_001163380         RAB2B
3   chr14   21756793       22114275  NM_001170629          CHD8
4   chr14   21756793       22114275  NM_001303523          TOX4
5   chr14   21756793       22114275     NM_007192       SUPT16H
6   chr14   21756793       22114275     NM_019852        METTL3
7   chr14   21756793       22114275     NM_020366       RPGRIP1
10  chr14   21756793       22114275     NR_002916        SNORD8
11  chr14   21756793       22114275     NR_003029        SNORD9
12  chr14   21756793       22114275     NR_111966         SALL2
14  chr16   16418917       16530579  NM_001282511        NPIPA8
15  chr16   16418917       16530579     NR_036447        PKD1P1
16  chr16   16418917       16530579     NR_103772  LOC100288162
17  chr16   16418917       16530579     NR_106971     MIR6511A4
18  chr16   16418917       16530579     NR_107060     MIR6770-2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr20   14769205       14870112     NM_080676      MACROD2
1  chr20   14769205       14870112     NR_037841  MACROD2-AS1
2   chr4   93267943       93808988     NM_001510        GRID2
3   chr5   93418561       93709708  NM_001145678     KIAA0825
4   chr5   93418561       93709708  NM_001163418      FAM172A
5   chr5  119904819      120236087  NM_001300783        PRR16
8   chr7   93294772       93397518     NR_039796      MIR4652,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   19591154       19732195  NM_001267043         AEBP2
2   chr16   16366433       16878654  NM_001004067         NOMO3
3   chr16   16366433       16878654  NM_001282511        NPIPA8
4   chr16   16366433       16878654     NR_036140     MIR3179-1
5   chr16   16366433       16878654     NR_036141     MIR3180-1
6   chr16   16366433       16878654     NR_036142     MIR3180-2
7   chr16   16366433       16878654     NR_036447        PKD1P1
8   chr16   16366433       16878654     NR_103772  LOC100288162
9   chr16   16366433       16878654     NR_106766     MIR6511A1
10  chr16   16366433       16878654     NR_106971     MIR6511A4
11  chr16   16366433       16878654     NR_107060     MIR6770-2
12  chr16   16366433       16878654     NR_128713     MIR3670-4
13  chr18   19184604       19387200  NM_001291916        SNRPD1
14  chr18   19184604       19387200  NM_001308256         ABHD3
16  chr18   19184604       19387200     NM_020774          MIB1
17  chr18   19184604       19387200     NR_031565      MIR320C1
18  chr19   21455572       21572513  NM_001297560        ZNF708
21  chr19   21455572       21572513     NR_027130        ZNF738
22   chr2  185170657      186630108     NM_173651         FSIP2
23   chr2  185170657      186630108     NM_194250       ZNF804A
24   chr2  185170657      186630108     NR_039638     MIR548AE1
25   chr2  185170657      186630108     NR_110214  LOC101927196
28   chr2  185170657      186630108     NR_136319  LOC105373782
29   chr3    4096854        4684692  NM_001164675         SUMF1
30   chr3    4096854        4684692  NM_001168272         ITPR1
31   chr3    4096854        4684692  NM_001243723        SETMAR
33   chr3    4096854        4684692     NR_108075     ITPR1-AS1
34   chr5   96635527       96897125     NR_105028     LINC01340
35   chr9   41773631       42277616     NR_003670        FGF7P3
36   chr9   41773631       42277616     NR_015363         GLIDR
39   chr9   41773631       42277616     NR_126048  LOC102724238
40   chr9   41773631       42277616     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  187201518      187395757     NR_126347  LINC01036
1   chr10   56466008       56908604  NM_001142770     PCDH15
4   chr11   48264071       48525497  NM_001004702      OR4C3
5   chr11   48264071       48525497  NM_001004725      OR4S1
6   chr11   48264071       48525497  NM_001004726      OR4X1
7   chr11   48264071       48525497  NM_001004727      OR4X2
8   chr11   48264071       48525497  NM_001005512     OR4A47
9   chr11   48264071       48525497  NM_001005513     OR4C45
10  chr14   21651149       22152681  NM_001001912      OR4E2
11  chr14   21651149       22152681  NM_001005465     OR10G3
12  chr14   21651149       22152681  NM_001005466     OR10G2
13  chr14   21651149       22152681  NM_001163380      RAB2B
14  chr14   21651149       22152681  NM_001170629       CHD8
15  chr14   21651149       22152681  NM_001303523       TOX4
16  chr14   21651149       22152681  NM_001317107      OR4E1
17  chr14   21651149       22152681     NM_007192    SUPT16H
18  chr14   21651149       22152681     NM_019852     METTL3
19  chr14   21651149       22152681     NM_020366    RPGRIP1
21  chr14   21651149       22152681     NM_031314     HNRNPC
23  chr14   21651149       22152681     NR_002916     SNORD8
24  chr14   21651149       22152681     NR_003029     SNORD9
25  chr14   21651149       22152681     NR_038970  LINC00641
27  chr14   21651149       22152681     NR_111966      SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   68022717       68313697  NM_001127384        CTNNA3
2   chr11   89137029       89274416  NM_001143837          NOX4
8   chr16   16417070       16589731  NM_001282511        NPIPA8
9   chr16   16417070       16589731     NR_036447        PKD1P1
10  chr16   16417070       16589731     NR_103772  LOC100288162
11  chr16   16417070       16589731     NR_106766     MIR6511A1
12  chr16   16417070       16589731     NR_106971     MIR6511A4
13  chr16   16417070       16589731     NR_107060     MIR6770-2
14   chr2   52917799       53049657     NR_039630       MIR4431,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   21812166       22016364  NM_001163380          RAB2B
1   chr14   21812166       22016364  NM_001170629           CHD8
2   chr14   21812166       22016364  NM_001303523           TOX4
3   chr14   21812166       22016364     NM_007192        SUPT16H
4   chr14   21812166       22016364     NM_019852         METTL3
5   chr14   21812166       22016364     NM_020366        RPGRIP1
8   chr14   21812166       22016364     NR_002916         SNORD8
9   chr14   21812166       22016364     NR_003029         SNORD9
10  chr14   21812166       22016364     NR_111966          SALL2
12  chr16   14984177       15328627  NM_001270767          NTAN1
13  chr16   14984177       15328627  NM_001285445         PDXDC1
18  chr16   14984177       15328627  NM_001301064           RRN3
20  chr16   14984177       15328627     NM_006985         NPIPA1
21  chr16   14984177       15328627     NM_014287          NOMO1
22  chr16   14984177       15328627     NR_036140      MIR3179-1
23  chr16   14984177       15328627     NR_036141      MIR3180-1
24  chr16   14984177       15328627     NR_036142      MIR3180-2
25  chr16   14984177       15328627     NR_037466      MIR3180-4
26  chr16   14984177       15328627     NR_103772   LOC100288162
27  chr16   14984177       15328627     NR_106775      MIR6511B1
28  chr16   14984177       15328627     NR_106965      MIR6511B2
29  chr16   14984177       15328627     NR_106970      MIR6511A3
30  chr16   14984177       15328627     NR_107060      MIR6770-2
31  chr16   14984177       15328627     NR_123721  PKD1P6-NPIPP1
33  chr16   14984177       15328627     NR_125434   LOC100505915
34  chr16   14984177       15328627     NR_128713      MIR3670-4
35   chr3   65800081       65945511  NM_001033057          MAGI1
37   chr3   65800081       65945511     NR_046575      MAGI1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67679615       67826550  NM_001127384        CTNNA3
2   chr14   21848822       23141475  NM_001001912         OR4E2
3   chr14   21848822       23141475  NM_001005465        OR10G3
4   chr14   21848822       23141475  NM_001005466        OR10G2
5   chr14   21848822       23141475  NM_001163380         RAB2B
6   chr14   21848822       23141475  NM_001170629          CHD8
7   chr14   21848822       23141475  NM_001303523          TOX4
8   chr14   21848822       23141475  NM_001317107         OR4E1
9   chr14   21848822       23141475     NM_001344          DAD1
10  chr14   21848822       23141475     NM_007192       SUPT16H
11  chr14   21848822       23141475     NM_019852        METTL3
13  chr14   21848822       23141475     NM_022060         ABHD4
15  chr14   21848822       23141475     NR_002916        SNORD8
16  chr14   21848822       23141475     NR_003029        SNORD9
17  chr14   21848822       23141475     NR_111966         SALL2
19   chr3  162869031      162970489     NR_033945     LINC01192
20   chr8    3998259        4103695     NM_033225         CSMD1
21   chr8   92656650       94212891  NM_001171795         TRIQK
24   chr8   92656650       94212891  NM_001198628       RUNX1T1
26   chr8   92656650       94212891  NM_001242668       C8orf87
31   chr8   92656650       94212891     NR_046114      FLJ46284
32   chr8   92656650       94212891     NR_106988     MIR7641-2
33   chr8   92656650       94212891     NR_107051       MIR8084
34   chr8   92656650       94212891     NR_125827  LOC102724710,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21757844       21921809  NM_001170629          CHD8
1   chr14   21757844       21921809     NM_007192       SUPT16H
2   chr14   21757844       21921809     NM_020366       RPGRIP1
4   chr14   21757844       21921809     NR_002916        SNORD8
5   chr14   21757844       21921809     NR_003029        SNORD9
6   chr16   18378090       18532100  NM_001004060         NOMO2
7   chr16   18378090       18532100  NM_001282511        NPIPA8
8   chr16   18378090       18532100     NR_036140     MIR3179-1
9   chr16   18378090       18532100     NR_036142     MIR3180-2
10  chr16   18378090       18532100     NR_036144     MIR3180-3
11  chr16   18378090       18532100     NR_037442     MIR3670-1
12  chr16   18378090       18532100     NR_103772  LOC100288162
13  chr16   18378090       18532100     NR_106971     MIR6511A4
14  chr16   18378090       18532100     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63354234       63558972     NR_047029     LINC00448
3   chr14   21827242       22043375  NM_001005465        OR10G3
4   chr14   21827242       22043375  NM_001163380         RAB2B
5   chr14   21827242       22043375  NM_001170629          CHD8
6   chr14   21827242       22043375  NM_001303523          TOX4
7   chr14   21827242       22043375     NM_007192       SUPT16H
8   chr14   21827242       22043375     NM_019852        METTL3
11  chr14   21827242       22043375     NR_002916        SNORD8
12  chr14   21827242       22043375     NR_003029        SNORD9
13  chr14   21827242       22043375     NR_111966         SALL2
15  chr16   21541246       21670905  NM_001077180        METTL9
17  chr16   21541246       21670905     NM_005849         IGSF6
18  chr16   21541246       21670905     NR_110930  LOC101927814
19   chr7    6692946        6915745  NM_001099697      RSPH10B2
20   chr7    6692946        6915745  NM_001278559        ZNF316
21   chr7    6692946        6915745     NM_006956         ZNF12
22   chr7    6692946        6915745     NM_198097         CCZ1B
23   chr7    6692946        6915745     NR_002217        PMS2CL,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1    2816358        6238544  NM_001042478         AJAP1
1    chr1    2816358        6238544  NM_001126241          TP73
2    chr1    2816358        6238544  NM_001163724         SMIM1
3    chr1    2816358        6238544  NM_001199860        KCNAB2
10   chr1    2816358        6238544  NM_001320136          DFFB
11   chr1    2816358        6238544     NM_001409         MEGF6
13   chr1    2816358        6238544     NM_014448      ARHGEF16
14   chr1    2816358        6238544     NM_014704        CEP104
15   chr1    2816358        6238544     NM_015557          CHD5
16   chr1    2816358        6238544     NM_017818        WRAP73
18   chr1    2816358        6238544     NM_020710        LRRC47
19   chr1    2816358        6238544     NM_080431        ACTRT2
20   chr1    2816358        6238544     NM_152492        CCDC27
21   chr1    2816358        6238544     NM_182752        TPRG1L
22   chr1    2816358        6238544     NM_199454        PRDM16
23   chr1    2816358        6238544     NM_207356      C1orf174
24   chr1    2816358        6238544     NR_015440     LINC00982
26   chr1    2816358        6238544     NR_024455     LINC01134
27   chr1    2816358        6238544     NR_027088     LOC284661
28   chr1    2816358        6238544     NR_030277       MIR551A
29   chr1    2816358        6238544     NR_033708      TP73-AS1
31   chr1    2816358        6238544     NR_036215       MIR4251
32   chr1    2816358        6238544     NR_039612       MIR4417
33   chr1    2816358        6238544     NR_039838       MIR4689
34   chr1    2816358        6238544     NR_040065     LINC01346
35   chr1    2816358        6238544     NR_111987         NPHP4
36  chr13   63079711       63734314     NR_047029     LINC00448
39  chr22   17184809       17850630  NM_001037814          GAB4
40  chr22   17184809       17850630  NM_001163079         CECR6
41  chr22   17184809       17850630  NM_001282227         CECR1
43  chr22   17184809       17850630  NM_001289905        IL17RA
44  chr22   17184809       17850630  NM_001290046         CECR2
45  chr22   17184809       17850630     NM_017829         CECR5
48  chr22   17184809       17850630     NM_175878          XKR3
50  chr22   17184809       17850630     NR_003607       HSFY1P1
51  chr22   17184809       17850630     NR_015352         CECR7
52  chr22   17184809       17850630     NR_024482     CECR5-AS1
53  chr22   17184809       17850630     NR_038398         CECR3
54  chr22   17184809       17850630     NR_103793  LOC100996342
55  chr22   17184809       17850630     NR_134584  LOC101929350
56   chr5  142434216      142568243  NM_001135608      ARHGAP26
57   chr6    5139237        5296555  NM_001164840         LYRM4
59   chr6    5139237        5296555  NM_001318872         FARS2
62   chr6    5139237        5296555     NR_037462       MIR3691
63   chr6    5139237        5296555     NR_126015     LYRM4-AS1
65   chr6  162458928      162647916     NM_013988         PARK2
66   chr7  109540769      109655933     NR_003024       EIF3IP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67897319       68073656  NM_001127384        CTNNA3
2   chr12   80962982       82398472  NM_001145026         PTPRQ
3   chr12   80962982       82398472  NM_001220473        PPFIA2
8   chr12   80962982       82398472  NM_001324423         LIN7A
9   chr12   80962982       82398472  NM_001330243         ACSS3
10  chr12   80962982       82398472     NM_002469          MYF6
12  chr12   80962982       82398472     NM_005593          MYF5
13  chr12   80962982       82398472     NR_030348        MIR617
14  chr12   80962982       82398472     NR_030349        MIR618
15  chr12   80962982       82398472     NR_039848       MIR4699
16  chr12   80962982       82398472     NR_110089  LOC101928449
17  chr12   80962982       82398472     NR_120468     LINC01490
18  chr12   80962982       82398472     NR_120491  LOC102724663
19  chr16   21527092       21952972  NM_001077180        METTL9
20  chr16   21527092       21952972  NM_001161683          OTOA
22  chr16   21527092       21952972  NM_001310148        NPIPB4
23  chr16   21527092       21952972     NM_005849         IGSF6
26  chr16   21527092       21952972     NR_002594      SLC7A5P2
27  chr16   21527092       21952972     NR_003370        RRN3P1
28  chr16   21527092       21952972     NR_110930  LOC101927814
29  chr22   19009794       19316726  NM_001184781         DGCR2
30  chr22   19009794       19316726  NM_001256534       SLC25A1
31  chr22   19009794       19316726     NM_001835        CLTCL1
32  chr22   19009794       19316726     NM_005315          GSC2
34  chr22   19009794       19316726     NM_022719        DGCR14
35  chr22   19009794       19316726     NM_053006         TSSK2
36  chr22   19009794       19316726     NR_024157        DGCR11
37  chr22   19009794       19316726     NR_026651        DGCR10
38  chr22   19009794       19316726     NR_103767     LINC01311
39  chr22   19009794       19316726     NR_110533         DGCR5,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1  185873625      186129798     NM_031935          HMCN1
1   chr10   56506376       56663517  NM_001142770         PCDH15
4   chr14   21902955       22135038  NM_001001912          OR4E2
5   chr14   21902955       22135038  NM_001005465         OR10G3
6   chr14   21902955       22135038  NM_001005466         OR10G2
7   chr14   21902955       22135038  NM_001163380          RAB2B
8   chr14   21902955       22135038  NM_001303523           TOX4
9   chr14   21902955       22135038     NM_019852         METTL3
10  chr14   21902955       22135038     NM_020920           CHD8
12  chr14   21902955       22135038     NR_111966          SALL2
14  chr14   21850384       24087720     NM_000257           MYH7
15  chr14   21850384       24087720  NM_001001912          OR4E2
16  chr14   21850384       24087720  NM_001005465         OR10G3
17  chr14   21850384       24087720  NM_001005466         OR10G2
18  chr14   21850384       24087720  NM_001039619          PRMT5
19  chr14   21850384       24087720  NM_001042635           NGDN
20  chr14   21850384       24087720  NM_001099780         PSMB11
21  chr14   21850384       24087720  NM_001126105         SLC7A7
23  chr14   21850384       24087720  NM_001130706       C14orf93
24  chr14   21850384       24087720  NM_001130725          PSMB5
26  chr14   21850384       24087720  NM_001146028           JPH4
27  chr14   21850384       24087720  NM_001163380          RAB2B
28  chr14   21850384       24087720  NM_001164815          ACIN1
30  chr14   21850384       24087720  NM_001170629           CHD8
31  chr14   21850384       24087720  NM_001199839         BCL2L2
32  chr14   21850384       24087720  NM_001199864  BCL2L2-PABPN1
33  chr14   21850384       24087720  NM_001256323          THTPA
34  chr14   21850384       24087720  NM_001267036         SLC7A8
36  chr14   21850384       24087720  NM_001276318        PPP1R3E
37  chr14   21850384       24087720  NM_001277174            EFS
..    ...        ...            ...           ...            ...
49  chr14   21850384       24087720     NM_002471           MYH6
52  chr14   21850384       24087720     NM_004643         PABPN1
53  chr14   21850384       24087720     NM_004995          MMP14
54  chr14   21850384       24087720     NM_005015          OXA1L
55  chr14   21850384       24087720     NM_007192        SUPT16H
57  chr14   21850384       24087720     NM_017815          HAUS4
58  chr14   21850384       24087720     NM_017924      C14orf119
59  chr14   21850384       24087720     NM_018107          RBM23
60  chr14   21850384       24087720     NM_019852         METTL3
61  chr14   21850384       24087720     NM_020834          HOMEZ
63  chr14   21850384       24087720     NM_022060          ABHD4
64  chr14   21850384       24087720     NM_022478          CDH24
65  chr14   21850384       24087720     NM_022789           IL25
68  chr14   21850384       24087720     NM_033400          ZFHX2
69  chr14   21850384       24087720     NM_138460          CMTM5
71  chr14   21850384       24087720     NM_173527           REM2
73  chr14   21850384       24087720     NR_002916         SNORD8
74  chr14   21850384       24087720     NR_003029         SNORD9
75  chr14   21850384       24087720     NR_029595        MIR208A
76  chr14   21850384       24087720     NR_030624        MIR208B
77  chr14   21850384       24087720     NR_039856        MIR4707
81  chr14   21850384       24087720     NR_110002   LOC101926933
83  chr14   21850384       24087720     NR_110555   LOC102724814
84  chr14   21850384       24087720     NR_111966          SALL2
86  chr14   21850384       24087720     NR_120599      PRMT5-AS1
87  chr14   21850384       24087720     NR_126491           MHRT
88   chr7   64035908       64186594  NM_001282360         ZNF107
89   chr7   64035908       64186594     NR_033245      LOC641746
90   chr7   64035908       64186594     NR_077227   LOC100128885
92   chr7   64035908       64186594     NR_106898        MIR6839

[70 rows x 5 columns],    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr14   21926458       22029106  NM_001163380         RAB2B
1  chr14   21926458       22029106  NM_001303523          TOX4
2  chr14   21926458       22029106     NM_019852        METTL3
4  chr14   21926458       22029106     NR_111966         SALL2
6  chr16   18082755       18462692  NM_001282511        NPIPA8
7  chr16   18082755       18462692     NR_103772  LOC100288162
8  chr16   18082755       18462692     NR_106971     MIR6511A4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   20837228       20994083  NM_001288713         NELL1
1   chr13   95328544       95470267     NM_007084         SOX21
2   chr13   95328544       95470267     NR_046514     SOX21-AS1
3   chr13   95328544       95470267     NR_110754  LOC101927284
4   chr13   95328544       95470267     NR_120417  LOC101927248
5    chr2  131986137      132152242  NM_001077637        WTH3DI
6    chr2  131986137      132152242  NM_001083538         POTEE
7    chr2  131986137      132152242     NR_030728     LOC440910
8   chr20   14836031       16326109  NM_001033087       MACROD2
9   chr20   14836031       16326109     NM_024704        KIF16B
11  chr20   14836031       16326109     NR_037841   MACROD2-AS1
13  chr20   14836031       16326109     NR_130924     LOC613266
15   chr6  162695634      162808544     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187071464      187228782     NR_126347     LINC01036
1   chr14   21836393       22274451  NM_001001912         OR4E2
2   chr14   21836393       22274451  NM_001005465        OR10G3
3   chr14   21836393       22274451  NM_001005466        OR10G2
4   chr14   21836393       22274451  NM_001163380         RAB2B
5   chr14   21836393       22274451  NM_001170629          CHD8
6   chr14   21836393       22274451  NM_001303523          TOX4
7   chr14   21836393       22274451  NM_001317107         OR4E1
8   chr14   21836393       22274451     NM_007192       SUPT16H
9   chr14   21836393       22274451     NM_019852        METTL3
12  chr14   21836393       22274451     NR_002916        SNORD8
13  chr14   21836393       22274451     NR_003029        SNORD9
14  chr14   21836393       22274451     NR_111966         SALL2
16   chr2  235296840      235495649  NM_001282431         ARL4C
18  chr22   20113857       20334161  NM_001243537       CCDC188
19  chr22   20113857       20334161  NM_001278639        RANBP1
22  chr22   20113857       20334161     NM_013373        ZDHHC8
23  chr22   20113857       20334161     NM_023004         RTN4R
24  chr22   20113857       20334161     NM_033257        DGCR6L
25  chr22   20113857       20334161     NR_026919     LINC00896
26  chr22   20113857       20334161     NR_031618       MIR1286
27  chr22   20113857       20334161     NR_038460     LOC284865
28  chr22   20113857       20334161     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  233741546      233862358     NM_002245         KCNK1
1    chr1  233741546      233862358     NR_039625       MIR4427
2   chr14   21843969       22127462  NM_001005465        OR10G3
3   chr14   21843969       22127462  NM_001005466        OR10G2
4   chr14   21843969       22127462  NM_001163380         RAB2B
5   chr14   21843969       22127462  NM_001170629          CHD8
6   chr14   21843969       22127462  NM_001303523          TOX4
7   chr14   21843969       22127462     NM_007192       SUPT16H
8   chr14   21843969       22127462     NM_019852        METTL3
11  chr14   21843969       22127462     NR_002916        SNORD8
12  chr14   21843969       22127462     NR_003029        SNORD9
13  chr14   21843969       22127462     NR_111966         SALL2
15  chr14   55718350       55865444     NM_014924         ATG14
16  chr14   55718350       55865444     NM_017943        FBXO34
18  chr16    8641446        9552322     NM_000303          PMM2
19  chr16    8641446        9552322     NM_000663          ABAT
20  chr16    8641446        9552322  NM_001042476       CARHSP1
26  chr16    8641446        9552322  NM_001286457          USP7
29  chr16    8641446        9552322     NM_014117      C16orf72
31  chr16    8641446        9552322     NM_015421       TMEM186
33  chr16    8641446        9552322     NM_024109       METTL22
34  chr16    8641446        9552322     NR_126349     LINC01195
35  chr16    8641446        9552322     NR_126397     LINC01177
36  chr16    8641446        9552322     NR_135195  LOC101927009
38   chr7   11037254       11269033     NM_014660         PHF14,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   27166981       27317268  NM_001080406      C12orf71
1   chr12   27166981       27317268  NM_001271811         MED21
2   chr12   27166981       27317268     NM_016551        TM7SF3
3   chr13   86012011       86114213     NR_046989     LINC00351
4   chr16   18296662       18538294  NM_001004060         NOMO2
5   chr16   18296662       18538294  NM_001282511        NPIPA8
6   chr16   18296662       18538294     NR_036140     MIR3179-1
7   chr16   18296662       18538294     NR_036142     MIR3180-2
8   chr16   18296662       18538294     NR_036144     MIR3180-3
9   chr16   18296662       18538294     NR_037442     MIR3670-1
10  chr16   18296662       18538294     NR_103772  LOC100288162
11  chr16   18296662       18538294     NR_106971     MIR6511A4
12  chr16   18296662       18538294     NR_107060     MIR6770-2
13  chr16   68565919       68826260  NM_001305204         ZFP90
15  chr16   68565919       68826260  NM_001317184          CDH1
16  chr16   68565919       68826260  NM_001317195          CDH3
17  chr16   68565919       68826260     NR_106988     MIR7641-2
18   chr5  104154436      104685886     NR_000039       RAB9BP1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21816574       21933885  NM_001163380     RAB2B
1   chr14   21816574       21933885  NM_001170629      CHD8
2   chr14   21816574       21933885     NM_007192   SUPT16H
3   chr14   21816574       21933885     NM_020366   RPGRIP1
6   chr14   21816574       21933885     NR_002916    SNORD8
7   chr14   21816574       21933885     NR_003029    SNORD9
8   chr14   80032227       80313215  NM_001272020     NRXN3
11  chr16   29689878       29790634  NM_001318249      QPRT
12  chr16   29689878       29790634     NM_152338      ZG16
13  chr16   29689878       29790634     NM_175900  C16orf54,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56496975       56605241  NM_001142770        PCDH15
3   chr14   21815438       21922191  NM_001170629          CHD8
4   chr14   21815438       21922191     NM_007192       SUPT16H
5   chr14   21815438       21922191     NM_020366       RPGRIP1
7   chr14   21815438       21922191     NR_002916        SNORD8
8   chr14   21815438       21922191     NR_003029        SNORD9
9   chr16   29522633       29762164  NM_001030288           SPN
10  chr16   29522633       29762164  NM_001318249          QPRT
12  chr16   29522633       29762164     NM_175900      C16orf54
13  chr16   29522633       29762164     NR_049833     MIR3680-2
14  chr16   29522633       29762164     NR_135305        SMG1P2
16   chr7  110516021      110675324  NM_001244606        IMMP2L
18   chr7  121396538      121649787  NM_001206838        PTPRZ1
19   chr9   41605393       42362070     NR_003528       ZNF658B
20   chr9   41605393       42362070     NR_003670        FGF7P3
21   chr9   41605393       42362070     NR_015363         GLIDR
24   chr9   41605393       42362070     NR_126048  LOC102724238
25   chr9   41605393       42362070     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   53105827       53341776  NM_001098512         PRKG1
2   chr14   21921481       22402728  NM_001001912         OR4E2
3   chr14   21921481       22402728  NM_001005465        OR10G3
4   chr14   21921481       22402728  NM_001005466        OR10G2
5   chr14   21921481       22402728  NM_001163380         RAB2B
6   chr14   21921481       22402728  NM_001303523          TOX4
7   chr14   21921481       22402728  NM_001317107         OR4E1
8   chr14   21921481       22402728     NM_019852        METTL3
10  chr14   21921481       22402728     NR_111966         SALL2
12  chr16   21543620       21711909  NM_001077180        METTL9
13  chr16   21543620       21711909  NM_001161683          OTOA
15  chr16   21543620       21711909     NM_005849         IGSF6
17  chr16   21543620       21711909     NR_110930  LOC101927814
18  chr18   63296559       63440337  NM_001317214          CDH7
21  chr20   14804845       14928071     NM_080676       MACROD2
22  chr20   14804845       14928071     NR_037841   MACROD2-AS1
24   chr7  132727361      133139103  NM_001037126         EXOC4
25   chr7  132727361      133139103  NM_001317178        CHCHD3
28   chr7  132727361      133139103     NR_106749       MIR6133
29   chr7  132727361      133139103     NR_133931  LOC105375512,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr22   19012404       19232708  NM_001184781         DGCR2
1   chr22   19012404       19232708  NM_001256534       SLC25A1
2   chr22   19012404       19232708     NM_001835        CLTCL1
3   chr22   19012404       19232708     NM_005315          GSC2
5   chr22   19012404       19232708     NM_022719        DGCR14
6   chr22   19012404       19232708     NM_053006         TSSK2
7   chr22   19012404       19232708     NR_024157        DGCR11
8   chr22   19012404       19232708     NR_103767     LINC01311
9   chr22   19012404       19232708     NR_110533         DGCR5
10   chr4   11761512       13510033  NM_001017979         RAB28
11   chr4   11761512       13510033     NR_125910  LOC101929019,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   95313442       95419982     NM_007084         SOX21
1   chr13   95313442       95419982     NR_046514     SOX21-AS1
2   chr13   95313442       95419982     NR_110754  LOC101927284
3   chr13   95313442       95419982     NR_120417  LOC101927248
4   chr14   21866310       22027359  NM_001163380         RAB2B
5   chr14   21866310       22027359  NM_001170629          CHD8
6   chr14   21866310       22027359  NM_001303523          TOX4
7   chr14   21866310       22027359     NM_019852        METTL3
10  chr14   21866310       22027359     NR_111966         SALL2
12  chr15   28556514       28714585     NM_004667         HERC2
13  chr15   28556514       28714585     NR_033351       GOLGA8F
14  chr15   28556514       28714585     NR_033353       GOLGA8G
15  chr15   28556514       28714585     NR_039734     MIR4509-3
16   chr6  140807692      141586740     NR_039675       MIR4465
17   chr9   22408346       22509287     NM_022160        DMRTA1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21783558       21902117  NM_001170629          CHD8
1   chr14   21783558       21902117     NM_007192       SUPT16H
2   chr14   21783558       21902117     NM_020366       RPGRIP1
4   chr14   21783558       21902117     NR_002916        SNORD8
5   chr14   21783558       21902117     NR_003029        SNORD9
6   chr15   28176433       28297524     NM_000275          OCA2
8   chr16   21523739       21625442  NM_001077180        METTL9
10  chr16   21523739       21625442     NR_002594      SLC7A5P2
11  chr16   21523739       21625442     NR_110930  LOC101927814
12   chr5   99333227      100132121     NM_198507       FAM174A
13   chr5   99333227      100132121     NR_027503  LOC100133050,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr10   67580387       67958242  NM_001127384     CTNNA3
2  chr13   71688741       72016908     NM_080759      DACH1
3  chr13   71688741       72016908     NR_047699  LINC00348
4   chr2  107728886      107920501     NR_049853   MIR548AU
5   chr3    1764308        2142163     NM_175607      CNTN4
6   chr4  169210370      169415445  NM_001012967     DDX60L
8   chr4  169210370      169415445     NM_017631      DDX60,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21898384       22009900  NM_001163380     RAB2B
1  chr14   21898384       22009900  NM_001170629      CHD8
2  chr14   21898384       22009900  NM_001303523      TOX4
3  chr14   21898384       22009900     NM_019852    METTL3
6  chr14   21898384       22009900     NR_111966     SALL2
8   chr7  110795280      110986678  NM_001244606    IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name       gene_name
0   chr13   63153959       63517285     NR_047029       LINC00448
3   chr15   43915584       44111144  NM_001018108           SERF2
7   chr15   43915584       44111144  NM_001199885            HYPK
8   chr15   43915584       44111144  NM_001258031         SERINC4
9   chr15   43915584       44111144  NM_001282309        CATSPER2
10  chr15   43915584       44111144  NM_001321927          CKMT1A
13  chr15   43915584       44111144     NM_005313           PDIA3
14  chr15   43915584       44111144     NM_005926           MFAP1
15  chr15   43915584       44111144     NM_025165            ELL3
17  chr15   43915584       44111144     NR_002318      CATSPER2P1
18  chr15   43915584       44111144     NR_031695         MIR1282
19  chr15   43915584       44111144     NR_037673  SERF2-C15ORF63
22  chr16    8627132        8846356     NM_000663            ABAT
25  chr16    8627132        8846356     NM_024109         METTL22
26  chr16   14976024       15151921  NM_001270767           NTAN1
27  chr16   14976024       15151921  NM_001285445          PDXDC1
33  chr16   14976024       15151921     NM_006985          NPIPA1
34  chr16   14976024       15151921     NM_014287           NOMO1
35  chr16   14976024       15151921     NR_036140       MIR3179-1
36  chr16   14976024       15151921     NR_036141       MIR3180-1
37  chr16   14976024       15151921     NR_036142       MIR3180-2
38  chr16   14976024       15151921     NR_103772    LOC100288162
39  chr16   14976024       15151921     NR_106970       MIR6511A3
40  chr16   14976024       15151921     NR_107060       MIR6770-2
41  chr16   14976024       15151921     NR_128713       MIR3670-4
42  chr19   47820493       48175070  NM_001009813           MEIS3
43  chr19   47820493       48175070  NM_001271749           C5AR2
45  chr19   47820493       48175070  NM_001277075          ZNF541
46  chr19   47820493       48175070  NM_001291296            KPTN
49  chr19   47820493       48175070     NM_001736           C5AR1
50  chr19   47820493       48175070     NM_014681           DHX34
51  chr19   47820493       48175070     NM_015063          SLC8A2
52  chr19   47820493       48175070     NM_015711         GLTSCR1
54  chr19   47820493       48175070     NR_038452        NAPA-AS1
55  chr19   47820493       48175070     NR_038457            NAPA
56   chr2  129482803      129628672     NR_110278    LOC101927881
57   chr2  186512954      186623823     NM_173651           FSIP2
58   chr2  186512954      186623823     NR_110214    LOC101927196,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12    9406904       10053814  NM_001190765         KLRF2
1   chr12    9406904       10053814  NM_001197319        CLEC2D
2   chr12    9406904       10053814  NM_001267701        CLECL1
3   chr12    9406904       10053814  NM_001291823         KLRF1
4   chr12    9406904       10053814     NM_001781          CD69
5   chr12    9406904       10053814     NM_002258         KLRB1
6   chr12    9406904       10053814     NM_005127        CLEC2B
8   chr12    9406904       10053814     NM_207375        CLEC2A
9   chr12    9406904       10053814     NR_002814     LOC374443
10  chr12    9406904       10053814     NR_024374     LOC642846
11  chr12    9406904       10053814     NR_033399        DDX12P
16  chr12    9406904       10053814     NR_120479  LOC101930452
17  chr12    9406904       10053814     NR_120481  LOC101928030
18  chr12    9406904       10053814     NR_137429     LINC00987
19  chr13   22435631       23013532     NR_047040     LINC00424
20  chr13   22435631       23013532     NR_103810     LINC00540
21  chr16   18511137       20099742  NM_001004060         NOMO2
22  chr16   18511137       20099742  NM_001012991         KNOP1
23  chr16   18511137       20099742     NM_001019        RPS15A
24  chr16   18511137       20099742  NM_001105249          TMC5
25  chr16   18511137       20099742  NM_001160364          TMC7
26  chr16   18511137       20099742  NM_001190983          COQ7
27  chr16   18511137       20099742  NM_001199022        CCP110
28  chr16   18511137       20099742  NM_001256720       CLEC19A
31  chr16   18511137       20099742  NM_001304771        GPRC5B
32  chr16   18511137       20099742  NM_001305121          IQCK
33  chr16   18511137       20099742  NM_001308157         SYT17
35  chr16   18511137       20099742  NM_001313858       ARL6IP1
36  chr16   18511137       20099742  NM_001318483        GPR139
37  chr16   18511137       20099742  NM_001324066          GDE1
40  chr16   18511137       20099742     NM_015092          SMG1
46  chr16   18511137       20099742     NM_020314      C16orf62
48  chr16   18511137       20099742     NR_003569       ABCC6P1
49  chr16   18511137       20099742     NR_028028      ITPRIPL2
50  chr16   18511137       20099742     NR_119379  LOC102723385
52   chr3   60076109       60229314  NM_001320899          FHIT,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28602555       31287011  NM_001039841     ARHGAP11B
1   chr15   28602555       31287011  NM_001130414         APBA2
2   chr15   28602555       31287011  NM_001146094          FAN1
4   chr15   28602555       31287011  NM_001282468       GOLGA8M
5   chr15   28602555       31287011  NM_001282472       GOLGA8J
6   chr15   28602555       31287011  NM_001282484       GOLGA8R
7   chr15   28602555       31287011  NM_001282490       GOLGA8H
8   chr15   28602555       31287011  NM_001301025          TJP1
12  chr15   28602555       31287011     NM_015307      FAM189A1
13  chr15   28602555       31287011     NM_017762        MTMR10
14  chr15   28602555       31287011     NM_138704        NSMCE3
15  chr15   28602555       31287011     NM_139320      CHRFAM7A
16  chr15   28602555       31287011     NR_026589       WHAMMP2
17  chr15   28602555       31287011     NR_026771  DKFZP434L187
18  chr15   28602555       31287011     NR_026858        ULK4P1
19  chr15   28602555       31287011     NR_026859        ULK4P3
20  chr15   28602555       31287011     NR_033351       GOLGA8F
22  chr15   28602555       31287011     NR_033353       GOLGA8G
24  chr15   28602555       31287011     NR_033933       GOLGA8T
25  chr15   28602555       31287011     NR_036443       HERC2P9
26  chr15   28602555       31287011     NR_036475  LOC100289656
27  chr15   28602555       31287011     NR_037599     PDCD6IPP2
28  chr15   28602555       31287011     NR_038253  LOC100288637
30  chr15   28602555       31287011     NR_039734     MIR4509-3
32  chr15   28602555       31287011     NR_047567     GOLGA6L7P
33  chr15   28602555       31287011     NR_072991      HERC2P10
34  chr15   28602555       31287011     NR_135221  LOC100130111
35   chr4  118835041      118991382     NM_004784         NDST3
36   chr7   68577302       69803417  NM_001127231         AUTS2
38   chr7   68577302       69803417     NR_108105  LOC100507468,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21795911       22050977  NM_001005465     OR10G3
1   chr14   21795911       22050977  NM_001163380      RAB2B
2   chr14   21795911       22050977  NM_001170629       CHD8
3   chr14   21795911       22050977  NM_001303523       TOX4
4   chr14   21795911       22050977     NM_007192    SUPT16H
5   chr14   21795911       22050977     NM_019852     METTL3
6   chr14   21795911       22050977     NM_020366    RPGRIP1
9   chr14   21795911       22050977     NR_002916     SNORD8
10  chr14   21795911       22050977     NR_003029     SNORD9
11  chr14   21795911       22050977     NR_111966      SALL2
13  chr15   28809521       28916317     NR_036443    HERC2P9
14  chr16   29727677       30017711  NM_001083613    TMEM219
15  chr16   29727677       30017711  NM_001114099     SEZ6L2
16  chr16   29727677       30017711  NM_001256269      KIF22
18  chr16   29727677       30017711  NM_001256443      PRRT2
19  chr16   29727677       30017711  NM_001276275        MAZ
20  chr16   29727677       30017711  NM_001282062      DOC2A
23  chr16   29727677       30017711  NM_001286585      CDIPT
24  chr16   29727677       30017711  NM_001293204        MVP
25  chr16   29727677       30017711  NM_001304562     INO80E
28  chr16   29727677       30017711     NM_003609     HIRIP3
29  chr16   29727677       30017711     NM_004783      TAOK2
32  chr16   29727677       30017711     NM_024516      PAGR1
33  chr16   29727677       30017711     NM_152338       ZG16
34  chr16   29727677       30017711     NM_175900   C16orf54
35  chr16   29727677       30017711     NM_178863     KCTD13
36  chr16   29727677       30017711     NM_181718     ASPHD1
37  chr16   29727677       30017711     NR_015396  CDIPT-AS1
40  chr18   67796654       67949527  NM_001318520       RTTN
41   chr4  189244818      189414198     NR_033869  LINC01060
42   chr5   17678007       17899631     NR_134286  LOC646241
44   chr9   17224279       17612459  NM_001114395      CNTLN
45   chr9   17224279       17612459     NM_003026     SH3GL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21905086       22127853  NM_001005465        OR10G3
1   chr14   21905086       22127853  NM_001005466        OR10G2
2   chr14   21905086       22127853  NM_001163380         RAB2B
3   chr14   21905086       22127853  NM_001303523          TOX4
4   chr14   21905086       22127853     NM_019852        METTL3
5   chr14   21905086       22127853     NM_020920          CHD8
7   chr14   21905086       22127853     NR_111966         SALL2
9   chr16   68558633       68797198  NM_001305204         ZFP90
11  chr16   68558633       68797198  NM_001317184          CDH1
12  chr16   68558633       68797198  NM_001317195          CDH3
13  chr16   68558633       68797198     NR_106988     MIR7641-2
14   chr5   99607723       99947369     NM_198507       FAM174A
15   chr5   99607723       99947369     NR_027503  LOC100133050
16   chr7   64027882       64410672  NM_001160183        ZNF138
17   chr7   64027882       64410672  NM_001282360        ZNF107
18   chr7   64027882       64410672     NM_021148        ZNF273
19   chr7   64027882       64410672     NR_033245     LOC641746
21   chr7   64027882       64410672     NR_077227  LOC100128885
23   chr7   64027882       64410672     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21900791       22006131  NM_001163380         RAB2B
1   chr14   21900791       22006131  NM_001303523          TOX4
2   chr14   21900791       22006131     NM_019852        METTL3
3   chr14   21900791       22006131     NM_020920          CHD8
5   chr14   21900791       22006131     NR_111966         SALL2
7   chr15   87242079       87345628     NM_152336         AGBL1
8    chr2   78737377       78870536     NR_136312  LOC105374820
9    chr6  154004048      154979414  NM_001008503         OPRM1
11   chr6  154004048      154979414  NM_001130699        IPCEF1
20   chr6  154004048      154979414     NM_173515        CNKSR3
23   chr7   64030320       64344431  NM_001160183        ZNF138
24   chr7   64030320       64344431  NM_001282360        ZNF107
25   chr7   64030320       64344431     NR_033245     LOC641746
27   chr7   64030320       64344431     NR_077227  LOC100128885
29   chr7   64030320       64344431     NR_106898       MIR6839
30   chr7   81914520       82051029     NM_000722      CACNA2D1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21791985       21938873  NM_001163380      RAB2B
1   chr14   21791985       21938873  NM_001170629       CHD8
2   chr14   21791985       21938873     NM_007192    SUPT16H
3   chr14   21791985       21938873     NM_020366    RPGRIP1
6   chr14   21791985       21938873     NR_002916     SNORD8
7   chr14   21791985       21938873     NR_003029     SNORD9
8   chr22   15709535       16672725  NM_001005239     OR11H1
9   chr22   15709535       16672725  NM_001136213      POTEH
10  chr22   15709535       16672725     NR_046571  POTEH-AS1
11  chr22   15709535       16672725     NR_073459    BMS1P18
12  chr22   15709535       16672725     NR_122113     DUXAP8
13  chr22   15709535       16672725     NR_132385  LINC01297
14  chr22   15709535       16672725     NR_133911    BMS1P22
15   chr9   39116956       39285245     NM_033655    CNTNAP3
16   chr9  119632590      119743337     NM_014010      ASTN2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  187096729      187262092     NR_126347     LINC01036
1   chr14   21651197       22461478  NM_001001912         OR4E2
2   chr14   21651197       22461478  NM_001005465        OR10G3
3   chr14   21651197       22461478  NM_001005466        OR10G2
4   chr14   21651197       22461478  NM_001163380         RAB2B
5   chr14   21651197       22461478  NM_001170629          CHD8
6   chr14   21651197       22461478  NM_001303523          TOX4
7   chr14   21651197       22461478  NM_001317107         OR4E1
8   chr14   21651197       22461478     NM_007192       SUPT16H
9   chr14   21651197       22461478     NM_019852        METTL3
10  chr14   21651197       22461478     NM_020366       RPGRIP1
12  chr14   21651197       22461478     NM_031314        HNRNPC
14  chr14   21651197       22461478     NR_002916        SNORD8
15  chr14   21651197       22461478     NR_003029        SNORD9
16  chr14   21651197       22461478     NR_038970     LINC00641
18  chr14   21651197       22461478     NR_111966         SALL2
20  chr14   21845674       22351375  NM_001001912         OR4E2
21  chr14   21845674       22351375  NM_001005465        OR10G3
22  chr14   21845674       22351375  NM_001005466        OR10G2
23  chr14   21845674       22351375  NM_001163380         RAB2B
24  chr14   21845674       22351375  NM_001170629          CHD8
25  chr14   21845674       22351375  NM_001303523          TOX4
26  chr14   21845674       22351375  NM_001317107         OR4E1
27  chr14   21845674       22351375     NM_007192       SUPT16H
28  chr14   21845674       22351375     NM_019852        METTL3
31  chr14   21845674       22351375     NR_002916        SNORD8
32  chr14   21845674       22351375     NR_003029        SNORD9
33  chr14   21845674       22351375     NR_111966         SALL2
35  chr14   26986095       28284617     NM_002515         NOVA1
37  chr14   26986095       28284617     NR_036193       MIR4307
38  chr14   26986095       28284617     NR_039992     LINC00645
39  chr14   26986095       28284617     NR_110033  LOC101927062
40  chr14   26986095       28284617     NR_110041     MIR4307HG
41  chr14   26986095       28284617     NR_110556  LOC102724890
42  chr14   26986095       28284617     NR_130461       MIR3171,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21783483       22022545  NM_001163380         RAB2B
1   chr14   21783483       22022545  NM_001170629          CHD8
2   chr14   21783483       22022545  NM_001303523          TOX4
3   chr14   21783483       22022545     NM_007192       SUPT16H
4   chr14   21783483       22022545     NM_019852        METTL3
5   chr14   21783483       22022545     NM_020366       RPGRIP1
8   chr14   21783483       22022545     NR_002916        SNORD8
9   chr14   21783483       22022545     NR_003029        SNORD9
10  chr14   21783483       22022545     NR_111966         SALL2
12  chr15   58813308       59059659     NM_000236          LIPC
13  chr15   58813308       59059659     NM_001110        ADAM10
14  chr15   58813308       59059659     NR_073415     HSP90AB4P
15   chr2  236645014      236766155  NM_001244888         AGAP1
17   chr5   63803301       64376963  NM_001029875        RGS7BP
18   chr5   63803301       64376963  NM_001164442       FAM159B
19   chr5   63803301       64376963  NM_001297645         CWC27
22   chr5   63803301       64376963     NM_173829      SREK1IP1
24   chr5  175445345      175554580  NM_001265615       FAM153B
25   chr5  175445345      175554580     NR_038402  LOC100507387
26   chr5  175445345      175554580     NR_103794  LOC100996385,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    7583770        8125031  NM_001003745     OR10A3
1   chr11    7583770        8125031  NM_001004461     OR10A6
2   chr11    7583770        8125031  NM_001256568    PPFIBP2
4   chr11    7583770        8125031  NM_001302826     CYB5R2
6   chr11    7583770        8125031     NM_003320        TUB
8   chr11    7583770        8125031     NM_003754      EIF3F
10  chr11    7583770        8125031     NM_153444      OR5P2
11  chr11    7583770        8125031     NM_153445      OR5P3
12  chr11    7583770        8125031     NM_176821     NLRP10
14  chr11    7583770        8125031     NM_198185      OVCH2
15  chr11    7583770        8125031     NR_027711     OR5E1P
16  chr11    7583770        8125031     NR_036678  LOC283299
17  chr11    7583770        8125031     NR_120537    TUB-AS1
18  chr11    7583770        8125031     NR_125366     CASC23
19  chr11    7583770        8125031     NR_144485       RIC3
20  chr11   48340871       48559346  NM_001004702      OR4C3
21  chr11   48340871       48559346  NM_001005512     OR4A47
22  chr11   48340871       48559346  NM_001005513     OR4C45
23  chr14   75183728       75295790  NM_001318508       FCF1
25  chr14   75183728       75295790     NM_019589      YLPM1
26  chr15   28217424       28346561     NM_000275       OCA2
28   chr9   28505475       29162088  NM_001258282     LINGO2
30   chr9   28505475       29162088     NR_030597     MIR876
31   chr9   28505475       29162088     NR_030618     MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28609510       32136600  NM_001039841     ARHGAP11B
1   chr15   28609510       32136600  NM_001130414         APBA2
2   chr15   28609510       32136600  NM_001146094          FAN1
4   chr15   28609510       32136600  NM_001243538     LOC283710
5   chr15   28609510       32136600  NM_001252020         TRPM1
8   chr15   28609510       32136600  NM_001282468       GOLGA8M
9   chr15   28609510       32136600  NM_001282472       GOLGA8J
10  chr15   28609510       32136600  NM_001282484       GOLGA8R
11  chr15   28609510       32136600  NM_001282490       GOLGA8H
12  chr15   28609510       32136600  NM_001301025          TJP1
14  chr15   28609510       32136600  NM_001302461         KLF13
15  chr15   28609510       32136600  NM_001329907        OTUD7A
18  chr15   28609510       32136600     NM_015307      FAM189A1
20  chr15   28609510       32136600     NM_017762        MTMR10
22  chr15   28609510       32136600     NM_138704        NSMCE3
23  chr15   28609510       32136600     NM_139320      CHRFAM7A
24  chr15   28609510       32136600     NR_026589       WHAMMP2
25  chr15   28609510       32136600     NR_026771  DKFZP434L187
26  chr15   28609510       32136600     NR_026858        ULK4P1
27  chr15   28609510       32136600     NR_026859        ULK4P3
28  chr15   28609510       32136600     NR_029624        MIR211
29  chr15   28609510       32136600     NR_033351       GOLGA8F
31  chr15   28609510       32136600     NR_033353       GOLGA8G
33  chr15   28609510       32136600     NR_033933       GOLGA8T
34  chr15   28609510       32136600     NR_036443       HERC2P9
35  chr15   28609510       32136600     NR_036475  LOC100289656
36  chr15   28609510       32136600     NR_037599     PDCD6IPP2
37  chr15   28609510       32136600     NR_038253  LOC100288637
39  chr15   28609510       32136600     NR_039734     MIR4509-3
41  chr15   28609510       32136600     NR_047567     GOLGA6L7P
42  chr15   28609510       32136600     NR_072991      HERC2P10
43  chr15   28609510       32136600     NR_135221  LOC100130111
44  chr15   28609510       32136600     NR_135834  LOC102725022,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21852360       22106835  NM_001005465    OR10G3
1   chr14   21852360       22106835  NM_001005466    OR10G2
2   chr14   21852360       22106835  NM_001163380     RAB2B
3   chr14   21852360       22106835  NM_001170629      CHD8
4   chr14   21852360       22106835  NM_001303523      TOX4
5   chr14   21852360       22106835     NM_007192   SUPT16H
6   chr14   21852360       22106835     NM_019852    METTL3
9   chr14   21852360       22106835     NR_002916    SNORD8
10  chr14   21852360       22106835     NR_003029    SNORD9
11  chr14   21852360       22106835     NR_111966     SALL2
13   chr3    1122178        1404581  NM_001289081     CNTN6
14   chr3  176600795      176778805  NM_001321193   TBL1XR1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12  132070221      132251630  NM_001261411        SFSWAP
1   chr15   28639324       28993901  NM_001282468       GOLGA8M
2   chr15   28639324       28993901     NR_026589       WHAMMP2
3   chr15   28639324       28993901     NR_033351       GOLGA8F
4   chr15   28639324       28993901     NR_033353       GOLGA8G
5   chr15   28639324       28993901     NR_036443       HERC2P9
6   chr15   28639324       28993901     NR_039734     MIR4509-3
8   chr16   16440569       16687015  NM_001282511        NPIPA8
9   chr16   16440569       16687015     NR_036447        PKD1P1
10  chr16   16440569       16687015     NR_106971     MIR6511A4
11   chr7   64015836       64166477  NM_001130022        ZNF680
12   chr7   64015836       64166477  NM_001282360        ZNF107
14   chr7   64015836       64166477     NR_033245     LOC641746
15   chr7   64015836       64166477     NR_077227  LOC100128885
17   chr7   64015836       64166477     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate    tx_name          gene_name
0  chr22   17110219       17438762  NM_175878               XKR3
1  chr22   17110219       17438762  NR_001591             TPTEP1
2  chr22   17110219       17438762  NR_003607            HSFY1P1
3  chr22   17110219       17438762  NR_040115  ANKRD62P1-PARP4P3
4  chr22   17110219       17438762  NR_134584       LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr15   29727685       29922983     NM_015307     FAM189A1
1   chr16   29519842       29721259  NM_001030288          SPN
2   chr16   29519842       29721259  NM_001318249         QPRT
4   chr16   29519842       29721259     NR_049833    MIR3680-2
5   chr16   29519842       29721259     NR_135305       SMG1P2
7   chr20   14906492       16391677  NM_001033087      MACROD2
8   chr20   14906492       16391677  NM_001199866       KIF16B
11  chr20   14906492       16391677     NR_037841  MACROD2-AS1
13  chr20   14906492       16391677     NR_130924    LOC613266
15  chr21   30148001       30445234  NM_001320724       RWDD2B
16  chr21   30148001       30445234  NM_001320766         LTN1
17  chr21   30148001       30445234     NM_006447        USP16
18  chr21   30148001       30445234     NM_006585         CCT8
19  chr21   30148001       30445234     NM_013240       N6AMT1
23  chr22   17230255       17428909     NM_175878         XKR3
24  chr22   17230255       17428909     NR_003607      HSFY1P1
25   chr5  104185234      104705795     NR_000039      RAB9BP1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67630288       67748304  NM_001127384        CTNNA3
2   chr13   93112061       93267105     NM_004466          GPC5
3   chr13   93112061       93267105     NR_049840      MIR548AS
4   chr16   18407034       18572808  NM_001004060         NOMO2
5   chr16   18407034       18572808  NM_001282511        NPIPA8
6   chr16   18407034       18572808     NR_036140     MIR3179-1
7   chr16   18407034       18572808     NR_036142     MIR3180-2
8   chr16   18407034       18572808     NR_036144     MIR3180-3
9   chr16   18407034       18572808     NR_037442     MIR3670-1
10  chr16   18407034       18572808     NR_103772  LOC100288162
11  chr16   18407034       18572808     NR_106971     MIR6511A4
12  chr16   18407034       18572808     NR_107060     MIR6770-2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21901697       22104212  NM_001005465       OR10G3
1   chr14   21901697       22104212  NM_001005466       OR10G2
2   chr14   21901697       22104212  NM_001163380        RAB2B
3   chr14   21901697       22104212  NM_001303523         TOX4
4   chr14   21901697       22104212     NM_019852       METTL3
5   chr14   21901697       22104212     NM_020920         CHD8
7   chr14   21901697       22104212     NR_111966        SALL2
9   chr20   14639026       14886689     NM_080676      MACROD2
10  chr20   14639026       14886689     NR_037841  MACROD2-AS1
12   chr4  169244549      169422691  NM_001012967       DDX60L
13   chr4  169244549      169422691  NM_001166108        PALLD
15   chr7   16535243       16648513  NM_001195280       LRRC72
16   chr7   16535243       16648513     NM_020319       ANKMY2
17   chr9   14971782       15102090     NR_003920    LOC389705,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241677399      241883636     NM_000143            FH
1    chr1  241677399      241883636     NM_001821          CHML
2    chr1  241677399      241883636     NM_003679           KMO
3    chr1  241677399      241883636     NM_014322          OPN3
4    chr1  241677399      241883636     NM_144625         WDR64
5   chr16   16377750       16580346  NM_001004067         NOMO3
6   chr16   16377750       16580346  NM_001282511        NPIPA8
7   chr16   16377750       16580346     NR_036140     MIR3179-1
8   chr16   16377750       16580346     NR_036141     MIR3180-1
9   chr16   16377750       16580346     NR_036142     MIR3180-2
10  chr16   16377750       16580346     NR_036447        PKD1P1
11  chr16   16377750       16580346     NR_103772  LOC100288162
12  chr16   16377750       16580346     NR_106766     MIR6511A1
13  chr16   16377750       16580346     NR_106971     MIR6511A4
14  chr16   16377750       16580346     NR_107060     MIR6770-2
15  chr16   16377750       16580346     NR_128713     MIR3670-4
16   chr4   69293631       69450486     NM_001077       UGT2B17
17   chr4   69293631       69450486     NM_014058     TMPRSS11E
18   chr9   41490715       41596619  NM_001113541     SPATA31A5
19   chr9   41490715       41596619     NM_015667     SPATA31A7
20   chr9   41490715       41596619     NR_003528       ZNF658B
21   chr9   41490715       41596619     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245022809      245150896  NM_001143943        EFCAB2
2    chr1  245022809      245150896     NM_004501        HNRNPU
4    chr1  245022809      245150896     NR_111907  LOC101928068
5   chr10   55816902       56019556  NM_001142770        PCDH15
8   chr14   21651119       21762549     NM_020366       RPGRIP1
9   chr14   21651119       21762549     NM_031314        HNRNPC
10  chr14   21651119       21762549     NR_038970     LINC00641
12  chr16   29530438       29646123     NR_049833     MIR3680-2
13  chr16   29530438       29646123     NR_135305        SMG1P2
15   chr7   64142119       65348199  NM_001007253        ERV3-1
16   chr7   64142119       65348199  NM_001160183        ZNF138
17   chr7   64142119       65348199  NM_001282360        ZNF107
18   chr7   64142119       65348199  NM_001287532         ZNF92
19   chr7   64142119       65348199     NM_015852        ZNF117
20   chr7   64142119       65348199     NM_021148        ZNF273
21   chr7   64142119       65348199     NM_173517      VKORC1L1
22   chr7   64142119       65348199     NR_002961       SNORA22
23   chr7   64142119       65348199     NR_003110        CCT6P1
24   chr7   64142119       65348199     NR_027392       INTS4P2
25   chr7   64142119       65348199     NR_033416        CCT6P3
26   chr7   64142119       65348199     NR_038378     LOC441242
30   chr7  153800386      153907624  NM_001039350          DPP6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27619883       27722386  NM_001034842        PTCHD3
1   chr10   27619883       27722386     NR_138082       ARMC4P1
2   chr14   21652739       23081238  NM_001001912         OR4E2
3   chr14   21652739       23081238  NM_001005465        OR10G3
4   chr14   21652739       23081238  NM_001005466        OR10G2
5   chr14   21652739       23081238  NM_001163380         RAB2B
6   chr14   21652739       23081238  NM_001170629          CHD8
7   chr14   21652739       23081238  NM_001303523          TOX4
8   chr14   21652739       23081238  NM_001317107         OR4E1
9   chr14   21652739       23081238     NM_001344          DAD1
10  chr14   21652739       23081238     NM_007192       SUPT16H
11  chr14   21652739       23081238     NM_019852        METTL3
12  chr14   21652739       23081238     NM_020366       RPGRIP1
14  chr14   21652739       23081238     NM_022060         ABHD4
15  chr14   21652739       23081238     NM_031314        HNRNPC
17  chr14   21652739       23081238     NR_002916        SNORD8
18  chr14   21652739       23081238     NR_003029        SNORD9
19  chr14   21652739       23081238     NR_038970     LINC00641
21  chr14   21652739       23081238     NR_111966         SALL2
23  chr14   21908222       22009491  NM_001163380         RAB2B
24  chr14   21908222       22009491  NM_001303523          TOX4
25  chr14   21908222       22009491     NM_019852        METTL3
27  chr14   21908222       22009491     NR_111966         SALL2
29   chr2   52202769       52743814     NR_135237     LOC730100
30   chr2   52202769       52743814     NR_135239  LOC105374596
31   chr2   97439607       97594294  NM_001122646       FAM178B
33   chr2   97439607       97594294     NM_016466       ANKRD39
35   chr2   97439607       97594294     NM_017623         CNNM3
36   chr2   97439607       97594294     NM_017789        SEMA4C
37   chr2   97439607       97594294     NM_020184         CNNM4
38   chr2   97439607       97594294     NM_144994       ANKRD23
39   chr2   97439607       97594294     NR_036074       MIR3127
40   chr2   97439607       97594294     NR_110209  LOC101927053
41   chr6  146428799      146574074  NM_001278064          GRM1
43   chr9   44250235       44505301     NR_121564  LOC101927827
44   chr9   44250235       44505301     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   10579623       10691924  NM_001304448         KLRC1
2   chr12   10579623       10691924     NM_002260         KLRC2
4   chr14   21942597       22202926  NM_001001912         OR4E2
5   chr14   21942597       22202926  NM_001005465        OR10G3
6   chr14   21942597       22202926  NM_001005466        OR10G2
7   chr14   21942597       22202926  NM_001163380         RAB2B
8   chr14   21942597       22202926  NM_001303523          TOX4
9   chr14   21942597       22202926  NM_001317107         OR4E1
10  chr14   21942597       22202926     NM_019852        METTL3
12  chr14   21942597       22202926     NR_111966         SALL2
14  chr22   20572851       21148530     NM_000185      SERPIND1
15  chr22   20572851       21148530  NM_001256523         ZNF74
16  chr22   20572851       21148530  NM_001293236         MED15
18  chr22   20572851       21148530     NM_058004         PI4KA
19  chr22   20572851       21148530     NM_153334        SCARF2
20  chr22   20572851       21148530     NR_024592     POM121L4P
21  chr22   20572851       21148530     NR_026815      TMEM191A
22  chr22   20572851       21148530     NR_033825        KLHL22
23  chr22   20572851       21148530     NR_136569     LOC729461
24  chr22   20572851       21148530     NR_136572  LOC101927859
25   chr3  105503520      105824373  NM_001321786          CBLB
31   chr4  169192532      169349021  NM_001012967        DDX60L
33   chr4  169192532      169349021     NM_017631         DDX60
34   chr7  110642723      110804015  NM_001099658         LRRN3
35   chr7  110642723      110804015  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13  113468759      113669067  NM_001112732         MCF2L
4   chr13  113468759      113669067     NM_015205        ATP11A
5   chr13  113468759      113669067     NR_034002     MCF2L-AS1
6   chr15   28659314       29390709  NM_001130414         APBA2
7   chr15   28659314       29390709  NM_001282468       GOLGA8M
8   chr15   28659314       29390709     NR_026589       WHAMMP2
9   chr15   28659314       29390709     NR_033351       GOLGA8F
10  chr15   28659314       29390709     NR_033353       GOLGA8G
11  chr15   28659314       29390709     NR_036443       HERC2P9
12  chr15   28659314       29390709     NR_036475  LOC100289656
13  chr15   28659314       29390709     NR_037599     PDCD6IPP2
14  chr15   28659314       29390709     NR_039734     MIR4509-3
16  chr15   28659314       29390709     NR_047567     GOLGA6L7P
17   chr6  162673188      162936877     NM_013988         PARK2
18   chr7  110747059      110873226  NM_001099658         LRRN3
19   chr7  110747059      110873226  NM_001244606        IMMP2L
21   chr9   39108869       39456790  NM_001085452     SPATA31A1
22   chr9   39108869       39456790     NM_033655       CNTNAP3
23   chr9   39108869       39456790     NR_003528       ZNF658B
24   chr9   39108869       39456790     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143652366      143789451  NM_001123068       PPIAL4G
1    chr1  143652366      143789451     NR_104014     LINC01138
2    chr1  143652366      143789451     NR_106967       MIR6077
3    chr1  143652366      143789451     NR_111930  LOC100132057
4   chr14   21823640       22058700  NM_001005465        OR10G3
5   chr14   21823640       22058700  NM_001163380         RAB2B
6   chr14   21823640       22058700  NM_001170629          CHD8
7   chr14   21823640       22058700  NM_001303523          TOX4
8   chr14   21823640       22058700     NM_007192       SUPT16H
9   chr14   21823640       22058700     NM_019852        METTL3
12  chr14   21823640       22058700     NR_002916        SNORD8
13  chr14   21823640       22058700     NR_003029        SNORD9
14  chr14   21823640       22058700     NR_111966         SALL2
16   chr7  117597062      118023673     NM_016200          LSM8
17   chr7  117597062      118023673     NM_019644        ANKRD7,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr20   14902596       15012641     NM_080676       MACROD2
1  chr20   14902596       15012641     NR_037841   MACROD2-AS1
3  chr22   17183389       17459268  NM_001037814          GAB4
4  chr22   17183389       17459268     NM_175878          XKR3
5  chr22   17183389       17459268     NR_003607       HSFY1P1
6  chr22   17183389       17459268     NR_134584  LOC101929350
7   chr4   69295987       69418773     NM_001077       UGT2B17
8   chr4   69295987       69418773     NM_014058     TMPRSS11E,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1  143130752      145815208  NM_001002810       PDE4DIP
3   chr1  143130752      145815208  NM_001012758        NUDT17
4   chr1  143130752      145815208  NM_001039888      ANKRD34A
5   chr1  143130752      145815208  NM_001097612        GPR89A
6   chr1  143130752      145815208  NM_001123068       PPIAL4G
7   chr1  143130752      145815208  NM_001135789       PPIAL4C
8   chr1  143130752      145815208  NM_001184795        PEX11B
13  chr1  143130752      145815208  NM_001201325         PDZK1
14  chr1  143130752      145815208  NM_001277444         NBPF9
15  chr1  143130752      145815208  NM_001278267        NBPF20
16  chr1  143130752      145815208  NM_001280799       ANKRD35
17  chr1  143130752      145815208  NM_001287385        FAM72C
18  chr1  143130752      145815208  NM_001302371        NBPF10
19  chr1  143130752      145815208  NM_001303040        ITGA10
20  chr1  143130752      145815208  NM_001303456        POLR3C
21  chr1  143130752      145815208  NM_001313972         TXNIP
22  chr1  143130752      145815208  NM_001345942        FAM72D
26  chr1  143130752      145815208     NM_004892        SEC22B
27  chr1  143130752      145815208     NM_005105         RBM8A
28  chr1  143130752      145815208     NM_006099         PIAS3
31  chr1  143130752      145815208     NM_007053         CD160
32  chr1  143130752      145815208     NM_014455        RNF115
34  chr1  143130752      145815208     NM_032305       POLR3GL
35  chr1  143130752      145815208     NM_145277          HFE2
36  chr1  143130752      145815208     NM_153713         LIX1L
37  chr1  143130752      145815208     NM_203458      NOTCH2NL
39  chr1  143130752      145815208     NR_002328        GNRHR2
40  chr1  143130752      145815208     NR_003242        PFN1P2
41  chr1  143130752      145815208     NR_024511     LINC00623
44  chr1  143130752      145815208     NR_102405         NBPF8
45  chr1  143130752      145815208     NR_104014     LINC01138
48  chr1  143130752      145815208     NR_104217       NBPF25P
49  chr1  143130752      145815208     NR_106794       MIR6736
50  chr1  143130752      145815208     NR_106967       MIR6077
51  chr1  143130752      145815208     NR_110761  LOC102723769
52  chr1  143130752      145815208     NR_111930  LOC100132057
53  chr1  143130752      145815208     NR_111953     LINC00869
54  chr1  143130752      145815208     NR_125967  LOC101928979
56  chr7    3762270        4565502  NM_001079653          SDK1
58  chr7   64053774       64316215  NM_001160183        ZNF138
59  chr7   64053774       64316215  NM_001282360        ZNF107
61  chr7   64053774       64316215     NR_077227  LOC100128885
63  chr7   64053774       64316215     NR_106898       MIR6839
64  chr7  110631632      111060517  NM_001099658         LRRN3
65  chr7  110631632      111060517  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   15406142       16657974  NM_001004067         NOMO3
1   chr16   15406142       16657974  NM_001040113         MYH11
2   chr16   15406142       16657974  NM_001079528         ABCC6
3   chr16   15406142       16657974  NM_001128423        MPV17L
4   chr16   15406142       16657974  NM_001142469      C16orf45
5   chr16   15406142       16657974  NM_001143979          NDE1
7   chr16   15406142       16657974  NM_001184998      KIAA0430
8   chr16   15406142       16657974  NM_001277325        NPIPA5
9   chr16   15406142       16657974  NM_001282511        NPIPA8
10  chr16   15406142       16657974     NM_004996         ABCC1
13  chr16   15406142       16657974     NR_030159        MIR484
14  chr16   15406142       16657974     NR_036140     MIR3179-1
15  chr16   15406142       16657974     NR_036141     MIR3180-1
16  chr16   15406142       16657974     NR_036142     MIR3180-2
17  chr16   15406142       16657974     NR_036447        PKD1P1
18  chr16   15406142       16657974     NR_103772  LOC100288162
19  chr16   15406142       16657974     NR_106761       MIR6506
20  chr16   15406142       16657974     NR_106766     MIR6511A1
21  chr16   15406142       16657974     NR_106971     MIR6511A4
22  chr16   15406142       16657974     NR_107060     MIR6770-2
23  chr16   15406142       16657974     NR_128713     MIR3670-4
24  chr16   15406142       16657974     NR_130755         FOPNL
25   chr3  193051425      195735881  NM_001010938          TNK2
26   chr3  193051425      195735881  NM_001011655        TMEM44
27   chr3  193051425      195735881  NM_001080513          CPN2
28   chr3  193051425      195735881  NM_001135057        LRRC15
29   chr3  193051425      195735881  NM_001282506         MUC20
31   chr3  193051425      195735881  NM_001308069        XXYLT1
32   chr3  193051425      195735881  NM_001316325        PPP1R2
33   chr3  193051425      195735881  NM_001322468          MUC4
..    ...        ...            ...           ...           ...
49   chr3  193051425      195735881     NR_027764       DPPA2P3
50   chr3  193051425      195735881     NR_030296        MIR570
51   chr3  193051425      195735881     NR_033929     LINC00884
52   chr3  193051425      195735881     NR_033944     LOC647323
53   chr3  193051425      195735881     NR_036089       MIR3137
54   chr3  193051425      195735881     NR_037891  LOC100507391
55   chr3  193051425      195735881     NR_046634      OPA1-AS1
56   chr3  193051425      195735881     NR_046726   ATP13A4-AS1
57   chr3  193051425      195735881     NR_047573    TMEM44-AS1
58   chr3  193051425      195735881     NR_102710    XXYLT1-AS2
59   chr3  193051425      195735881     NR_104188    XXYLT1-AS1
60   chr3  193051425      195735881     NR_106887       MIR6829
62   chr3  193051425      195735881     NR_122105     LINC00969
63   chr3  193051425      195735881     NR_125402  LOC101929337
64   chr3  193051425      195735881     NR_125403  LOC100505920
66   chr3  193051425      195735881     NR_134939  LOC101929697
68   chr3  193051425      195735881     NR_136179     LOC285389
71   chr3  193051425      195735881     NR_136185  LOC105374297
73   chr7   75803505       76109399  NM_001102594          DTX2
74   chr7   75803505       76109399  NM_001110199         SRRM3
75   chr7   75803505       76109399  NM_001110354           ZP3
76   chr7   75803505       76109399     NM_001540         HSPB1
78   chr7   75803505       76109399     NM_012479         YWHAG
79   chr7   75803505       76109399     NM_080744         SSC4D
80   chr7   75803505       76109399     NR_003262        FDPSP2
81   chr7  143779072      143885528  NM_001001659        OR2A14
82   chr7  143779072      143885528  NM_001003702      ARHGEF35
83   chr7  143779072      143885528  NM_001004135        OR2A12
84   chr7  143779072      143885528  NM_001005480         OR2A2
85   chr7  143779072      143885528     NM_198495        CTAGE4

[73 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   40676084       40785151  NM_001258419     LRRC4C
1   chr14   21813477       22279413  NM_001001912      OR4E2
2   chr14   21813477       22279413  NM_001005465     OR10G3
3   chr14   21813477       22279413  NM_001005466     OR10G2
4   chr14   21813477       22279413  NM_001163380      RAB2B
5   chr14   21813477       22279413  NM_001170629       CHD8
6   chr14   21813477       22279413  NM_001303523       TOX4
7   chr14   21813477       22279413  NM_001317107      OR4E1
8   chr14   21813477       22279413     NM_007192    SUPT16H
9   chr14   21813477       22279413     NM_019852     METTL3
10  chr14   21813477       22279413     NM_020366    RPGRIP1
13  chr14   21813477       22279413     NR_002916     SNORD8
14  chr14   21813477       22279413     NR_003029     SNORD9
15  chr14   21813477       22279413     NR_111966      SALL2
17  chr17   14082354       14600573  NM_001007530     CDRT15
18  chr17   14082354       14600573     NM_001303      COX10
19  chr17   14082354       14600573     NM_006041   HS3ST3B1
20  chr17   14082354       14600573     NR_026880   MGC12916
21   chr3   28893740       29402786  NM_001003792      RBMS3
23   chr3   28893740       29402786     NR_109804  RBMS3-AS3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   57657765       58021091  NM_001080156       ARHGAP9
2   chr12   57657765       58021091  NM_001111270      ARHGEF25
3   chr12   57657765       58021091  NM_001146258       PIP4K2C
4   chr12   57657765       58021091  NM_001160045          GLI1
6   chr12   57657765       58021091  NM_001261412         DCTN2
7   chr12   57657765       58021091  NM_001276468      B4GALNT1
8   chr12   57657765       58021091  NM_001286245          DTX3
10  chr12   57657765       58021091  NM_001330122        R3HDM2
12  chr12   57657765       58021091     NM_004083         DDIT3
13  chr12   57657765       58021091     NM_004984         KIF5A
14  chr12   57657765       58021091     NM_004990          MARS
15  chr12   57657765       58021091     NM_005538         INHBC
17  chr12   57657765       58021091     NM_031479         INHBE
19  chr12   57657765       58021091     NM_052897          MBD6
20  chr12   57657765       58021091     NM_133489      SLC26A10
22  chr12   57657765       58021091     NR_030346        MIR616
23  chr12   57657765       58021091     NR_106816       MIR6758
24  chr12   57657765       58021091     NR_120450  LOC101927583
25  chr14   21798021       21938974  NM_001163380         RAB2B
26  chr14   21798021       21938974  NM_001170629          CHD8
27  chr14   21798021       21938974     NM_007192       SUPT16H
28  chr14   21798021       21938974     NM_020366       RPGRIP1
31  chr14   21798021       21938974     NR_002916        SNORD8
32  chr14   21798021       21938974     NR_003029        SNORD9,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr11  131384975      131513376  NM_001048209           NTM
1  chr11  131384975      131513376     NR_110140  LOC101929653
2   chr2   47062543       47215480  NM_001171506         MCFD2
5   chr2   47062543       47215480  NM_001288951         TTC7A
7   chr2   47062543       47215480     NR_024452     LINC01119
8  chr20   14895907       15028439     NM_080676       MACROD2
9  chr20   14895907       15028439     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   47877992       48060076  NM_001113498          MDGA2
1   chr16   14995923       15388229  NM_001270767          NTAN1
2   chr16   14995923       15388229  NM_001285445         PDXDC1
7   chr16   14995923       15388229  NM_001301064           RRN3
9   chr16   14995923       15388229     NM_006985         NPIPA1
10  chr16   14995923       15388229     NR_036141      MIR3180-1
11  chr16   14995923       15388229     NR_036142      MIR3180-2
12  chr16   14995923       15388229     NR_037466      MIR3180-4
13  chr16   14995923       15388229     NR_103772   LOC100288162
14  chr16   14995923       15388229     NR_106775      MIR6511B1
15  chr16   14995923       15388229     NR_106965      MIR6511B2
16  chr16   14995923       15388229     NR_106970      MIR6511A3
17  chr16   14995923       15388229     NR_107060      MIR6770-2
18  chr16   14995923       15388229     NR_123721  PKD1P6-NPIPP1
20  chr16   14995923       15388229     NR_125434   LOC100505915
21  chr16   14995923       15388229     NR_128713      MIR3670-4
22   chr3    2237347        2367212  NM_001206955          CNTN4
24   chr6  136817945      136964880  NM_001198608           MAP7
28   chr6  136817945      136964880     NM_005923         MAP3K5
29   chr6  136817945      136964880     NR_125858   LOC101928461
30   chr7   64096506       64244886  NM_001282360         ZNF107
32   chr7   64096506       64244886     NR_106898        MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21758891       22346729  NM_001001912      OR4E2
1   chr14   21758891       22346729  NM_001005465     OR10G3
2   chr14   21758891       22346729  NM_001005466     OR10G2
3   chr14   21758891       22346729  NM_001163380      RAB2B
4   chr14   21758891       22346729  NM_001170629       CHD8
5   chr14   21758891       22346729  NM_001303523       TOX4
6   chr14   21758891       22346729  NM_001317107      OR4E1
7   chr14   21758891       22346729     NM_007192    SUPT16H
8   chr14   21758891       22346729     NM_019852     METTL3
9   chr14   21758891       22346729     NM_020366    RPGRIP1
12  chr14   21758891       22346729     NR_002916     SNORD8
13  chr14   21758891       22346729     NR_003029     SNORD9
14  chr14   21758891       22346729     NR_111966      SALL2
16  chr15   20629182       20770905  NM_001145004   GOLGA6L6
17  chr15   20629182       20770905     NR_027411   GOLGA8CP
18  chr15   20629182       20770905     NR_036432    HERC2P3
19  chr16    6765936        7067507  NM_001142334     RBFOX1
22  chr19   24226768       24399937  NM_001278661     ZNF254
25  chr19   24226768       24399937     NR_003603   HAVCR1P1
26   chr2   26602333       27412614     NM_000221        KHK
27   chr2   26602333       27412614  NM_001029881       CIB4
28   chr2   26602333       27412614  NM_001035507      AGBL5
29   chr2   26602333       27412614  NM_001042426      CENPA
30   chr2   26602333       27412614  NM_001083590    TMEM214
31   chr2   26602333       27412614  NM_001105519    C2orf70
32   chr2   26602333       27412614  NM_001134693       OST4
33   chr2   26602333       27412614  NM_001166239     CGREF1
35   chr2   26602333       27412614  NM_001253723     DPYSL5
37   chr2   26602333       27412614  NM_001303050     MAPRE3
38   chr2   26602333       27412614  NM_001330484       PREB
40   chr2   26602333       27412614     NM_002246      KCNK3
41   chr2   26602333       27412614     NM_004802       OTOF
43   chr2   26602333       27412614     NM_007046    EMILIN1
45   chr2   26602333       27412614     NM_017877    SLC35F6
47   chr2   26602333       27412614     NM_032604      ABHD1
48   chr2   26602333       27412614     NM_033505    SELENOI
49   chr2   26602333       27412614     NM_145038       DRC1
50   chr2   26602333       27412614     NM_175769      TCF23
51   chr2   26602333       27412614     NM_178553      PRR30
53   chr2   26602333       27412614     NR_046730  AGBL5-AS1
56   chr5  109770619      109919399  NM_001039763    TMEM232
57   chr5  109770619      109919399     NR_031644   MIR548F3
58   chr9    4520339        4622105  NM_001039395    SPATA6L
59   chr9    4520339        4622105     NM_004170     SLC1A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108393588      108635638     NM_006113          VAV3
1    chr1  108393588      108635638     NR_046653      VAV3-AS1
2    chr1  108393588      108635638     NR_107006       MIR7852
3   chr11   95758556       95885546     NM_032427         MAML2
4   chr14   26732548       26965569     NM_002515         NOVA1
6   chr15   20694523       22141307  NM_001145004      GOLGA6L6
7   chr15   20694523       22141307  NM_001277303        POTEB2
8   chr15   20694523       22141307  NM_001277304         POTEB
9   chr15   20694523       22141307     NM_207355        POTEB3
11  chr15   20694523       22141307     NR_024387       CXADRP2
12  chr15   20694523       22141307     NR_027053     LOC646214
13  chr15   20694523       22141307     NR_027411      GOLGA8CP
14  chr15   20694523       22141307     NR_027992        NBEAP1
15  chr15   20694523       22141307     NR_028506         NF1P2
17  chr15   20694523       22141307     NR_036062     MIR3118-2
18  chr15   20694523       22141307     NR_036063     MIR3118-3
19  chr15   20694523       22141307     NR_036432       HERC2P3
20  chr15   20694523       22141307     NR_040094     LINC01193
21  chr15   20694523       22141307     NR_049895     MIR5701-2
24  chr16   18337216       18806785  NM_001004060         NOMO2
25  chr16   18337216       18806785     NM_001019        RPS15A
26  chr16   18337216       18806785  NM_001282511        NPIPA8
27  chr16   18337216       18806785  NM_001313858       ARL6IP1
29  chr16   18337216       18806785     NR_003569       ABCC6P1
30  chr16   18337216       18806785     NR_036140     MIR3179-1
31  chr16   18337216       18806785     NR_036142     MIR3180-2
32  chr16   18337216       18806785     NR_036144     MIR3180-3
33  chr16   18337216       18806785     NR_037442     MIR3670-1
34  chr16   18337216       18806785     NR_103772  LOC100288162
35  chr16   18337216       18806785     NR_106971     MIR6511A4
36  chr16   18337216       18806785     NR_107060     MIR6770-2
37  chr21   22534570       22654964     NM_004540         NCAM2
38  chr22   20122428       20314043  NM_001243537       CCDC188
39  chr22   20122428       20314043     NM_013373        ZDHHC8
40  chr22   20122428       20314043     NM_023004         RTN4R
41  chr22   20122428       20314043     NM_033257        DGCR6L
42  chr22   20122428       20314043     NR_026919     LINC00896
43  chr22   20122428       20314043     NR_031618       MIR1286
44  chr22   20122428       20314043     NR_038460     LOC284865
45   chr4   93712076       94191275     NM_001510         GRID2
46   chr6   95602506       96237228     NM_024641         MANEA
47   chr6   95602506       96237228     NR_047502     MANEA-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   83584687       83768348  NM_001142699          DLG2
4   chr14   21746831       23325830  NM_001001912         OR4E2
5   chr14   21746831       23325830  NM_001005465        OR10G3
6   chr14   21746831       23325830  NM_001005466        OR10G2
7   chr14   21746831       23325830  NM_001126105        SLC7A7
9   chr14   21746831       23325830  NM_001163380         RAB2B
10  chr14   21746831       23325830  NM_001170629          CHD8
11  chr14   21746831       23325830  NM_001303523          TOX4
12  chr14   21746831       23325830  NM_001317107         OR4E1
13  chr14   21746831       23325830  NM_001318870        MRPL52
14  chr14   21746831       23325830     NM_001344          DAD1
15  chr14   21746831       23325830     NM_004995         MMP14
16  chr14   21746831       23325830     NM_005015         OXA1L
17  chr14   21746831       23325830     NM_007192       SUPT16H
18  chr14   21746831       23325830     NM_019852        METTL3
19  chr14   21746831       23325830     NM_020366       RPGRIP1
21  chr14   21746831       23325830     NM_022060         ABHD4
23  chr14   21746831       23325830     NR_002916        SNORD8
24  chr14   21746831       23325830     NR_003029        SNORD9
26  chr14   21746831       23325830     NR_111966         SALL2
28   chr5  175449333      175590154  NM_001265615       FAM153B
29   chr5  175449333      175590154     NR_036494     LOC643201
30   chr5  175449333      175590154     NR_038402  LOC100507387
31   chr5  175449333      175590154     NR_103794  LOC100996385
32   chr7  152333525      152457422     NM_005431         XRCC2
33   chr7  152333525      152457422     NM_020445        ACTR3B,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr1   59113433       59226623  NM_001085487         MYSM1
1   chr1  143753776      145052298  NM_001002810       PDE4DIP
4   chr1  143753776      145052298  NM_001123068       PPIAL4G
5   chr1  143753776      145052298  NM_001135789       PPIAL4C
10  chr1  143753776      145052298  NM_001277444         NBPF9
11  chr1  143753776      145052298  NM_001278267        NBPF20
12  chr1  143753776      145052298  NM_001287385        FAM72C
13  chr1  143753776      145052298  NM_001345942        FAM72D
18  chr1  143753776      145052298     NR_003242        PFN1P2
19  chr1  143753776      145052298     NR_024511     LINC00623
21  chr1  143753776      145052298     NR_102405         NBPF8
22  chr1  143753776      145052298     NR_111953     LINC00869
24  chr1  145293519      145403488  NM_001277444         NBPF9
25  chr1  145293519      145403488  NM_001278267        NBPF20
26  chr1  145293519      145403488  NM_001302371        NBPF10
27  chr1  145293519      145403488     NR_104217       NBPF25P
28  chr1  145293519      145403488     NR_125967  LOC101928979
29  chr1  145355726      145612187  NM_001012758        NUDT17
30  chr1  145355726      145612187  NM_001039888      ANKRD34A
31  chr1  145355726      145612187  NM_001184795        PEX11B
32  chr1  145355726      145612187  NM_001277444         NBPF9
33  chr1  145355726      145612187  NM_001278267        NBPF20
34  chr1  145355726      145612187  NM_001280799       ANKRD35
35  chr1  145355726      145612187  NM_001302371        NBPF10
36  chr1  145355726      145612187  NM_001303040        ITGA10
37  chr1  145355726      145612187  NM_001303456        POLR3C
38  chr1  145355726      145612187  NM_001313972         TXNIP
40  chr1  145355726      145612187     NM_005105         RBM8A
41  chr1  145355726      145612187     NM_006099         PIAS3
44  chr1  145355726      145612187     NM_014455        RNF115
45  chr1  145355726      145612187     NM_032305       POLR3GL
46  chr1  145355726      145612187     NM_145277          HFE2
47  chr1  145355726      145612187     NM_153713         LIX1L
48  chr1  145355726      145612187     NR_002328        GNRHR2
52  chr1  145355726      145612187     NR_104217       NBPF25P
53  chr1  145355726      145612187     NR_106794       MIR6736
54  chr1  145355726      145612187     NR_125967  LOC101928979
55  chr3  172121895      172260781  NM_001190942       TNFSF10
57  chr3  172121895      172260781     NM_004122          GHSR
59  chr5  154253778      154565091  NM_001014990        MRPL22
60  chr5  154253778      154565091  NM_001099293         KIF4B
61  chr5  154253778      154565091  NM_001301074         CNOT8
64  chr5  154253778      154565091     NM_015465        GEMIN5
65  chr7  110606583      110749992  NM_001099658         LRRN3
66  chr7  110606583      110749992  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21785821       22187019  NM_001001912     OR4E2
1   chr14   21785821       22187019  NM_001005465    OR10G3
2   chr14   21785821       22187019  NM_001005466    OR10G2
3   chr14   21785821       22187019  NM_001163380     RAB2B
4   chr14   21785821       22187019  NM_001170629      CHD8
5   chr14   21785821       22187019  NM_001303523      TOX4
6   chr14   21785821       22187019  NM_001317107     OR4E1
7   chr14   21785821       22187019     NM_007192   SUPT16H
8   chr14   21785821       22187019     NM_019852    METTL3
9   chr14   21785821       22187019     NM_020366   RPGRIP1
12  chr14   21785821       22187019     NR_002916    SNORD8
13  chr14   21785821       22187019     NR_003029    SNORD9
14  chr14   21785821       22187019     NR_111966     SALL2
16  chr19   33183924       33350106  NM_001105570    NUDT19
17  chr19   33183924       33350106  NM_001110822    TDRD12
18  chr19   33183924       33350106     NM_014270    SLC7A9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   16424986       17091186  NM_001282511        NPIPA8
1   chr16   16424986       17091186     NR_036447        PKD1P1
2   chr16   16424986       17091186     NR_106971     MIR6511A4
3   chr16   68569989       68722395  NM_001305204         ZFP90
5   chr16   68569989       68722395  NM_001317195          CDH3
6    chr2  153030953      153154900     NM_005843         STAM2
7    chr6  162578333      162999790     NM_013988         PARK2
8    chr7     140748         267738     NM_020223        FAM20C
9    chr7     140748         267738     NR_108065  LOC100507642
10   chr7     140748         267738     NR_134324  LOC105375115
11   chr7     140748         267738     NR_134325  LOC102723672
12   chr7    3430157        3560803     NM_152744          SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   54777627       54904311     NR_031628       MIR1297
1   chr16   16450249       19890184  NM_001004060         NOMO2
2   chr16   16450249       19890184  NM_001012991         KNOP1
3   chr16   16450249       19890184     NM_001019        RPS15A
4   chr16   16450249       19890184  NM_001105249          TMC5
5   chr16   16450249       19890184  NM_001160364          TMC7
6   chr16   16450249       19890184  NM_001190983          COQ7
7   chr16   16450249       19890184  NM_001199022        CCP110
8   chr16   16450249       19890184  NM_001256720       CLEC19A
10  chr16   16450249       19890184  NM_001282511        NPIPA8
13  chr16   16450249       19890184  NM_001304771        GPRC5B
14  chr16   16450249       19890184  NM_001305121          IQCK
15  chr16   16450249       19890184  NM_001308157         SYT17
17  chr16   16450249       19890184  NM_001313858       ARL6IP1
18  chr16   16450249       19890184  NM_001324066          GDE1
21  chr16   16450249       19890184     NM_015092          SMG1
27  chr16   16450249       19890184     NM_020314      C16orf62
28  chr16   16450249       19890184     NM_022166         XYLT1
30  chr16   16450249       19890184     NR_003569       ABCC6P1
31  chr16   16450249       19890184     NR_028028      ITPRIPL2
32  chr16   16450249       19890184     NR_036140     MIR3179-1
33  chr16   16450249       19890184     NR_036142     MIR3180-2
34  chr16   16450249       19890184     NR_036144     MIR3180-3
35  chr16   16450249       19890184     NR_037442     MIR3670-1
36  chr16   16450249       19890184     NR_103772  LOC100288162
37  chr16   16450249       19890184     NR_106971     MIR6511A4
39  chr16   16450249       19890184     NR_107060     MIR6770-2
40  chr16   16450249       19890184     NR_119379  LOC102723385
42  chr16   16450249       19890184     NR_135179  LOC102723692
43   chr5  154169332      154280762  NM_001301074         CNOT8
46   chr5  154169332      154280762     NM_015315         LARP1
47   chr5  154169332      154280762     NM_015465        GEMIN5
48   chr5  154169332      154280762     NM_032385        FAXDC2
49   chr5  154169332      154280762     NR_039667       MIR378H,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   14994998       15115378  NM_001285445        PDXDC1
6   chr16   14994998       15115378     NM_006985        NPIPA1
7   chr16   14994998       15115378     NR_036140     MIR3179-1
8   chr16   14994998       15115378     NR_036141     MIR3180-1
9   chr16   14994998       15115378     NR_036142     MIR3180-2
10  chr16   14994998       15115378     NR_103772  LOC100288162
11  chr16   14994998       15115378     NR_106970     MIR6511A3
12  chr16   14994998       15115378     NR_107060     MIR6770-2
13  chr16   14994998       15115378     NR_128713     MIR3670-4
14  chr21   28119946       28524164     NM_006988       ADAMTS1
15  chr21   28119946       28524164     NM_007038       ADAMTS5
16  chr21   28119946       28524164     NR_039916       MIR4759
17   chr7    2671895        2835345  NM_001282440         GNA12
19   chr7    2671895        2835345  NM_001284355          AMZ1
22   chr7    2671895        2835345     NM_025250         TTYH3
24   chr7   64054686       64197410  NM_001282360        ZNF107
25   chr7   64054686       64197410     NR_077227  LOC100128885
27   chr7   64054686       64197410     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21780498       21962254  NM_001163380         RAB2B
1   chr14   21780498       21962254  NM_001170629          CHD8
2   chr14   21780498       21962254  NM_001303523          TOX4
3   chr14   21780498       21962254     NM_007192       SUPT16H
4   chr14   21780498       21962254     NM_020366       RPGRIP1
7   chr14   21780498       21962254     NR_002916        SNORD8
8   chr14   21780498       21962254     NR_003029        SNORD9
9   chr14   27029163       27195539     NM_002515         NOVA1
11   chr3   41337624       43086145     NM_000729           CCK
12   chr3   41337624       43086145  NM_001042646         TRAK1
13   chr3   41337624       43086145  NM_001099668        HIGD1A
15   chr3   41337624       43086145  NM_001129908       FAM198A
16   chr3   41337624       43086145  NM_001134656        ZNF662
18   chr3   41337624       43086145  NM_001201572        SEC22C
20   chr3   41337624       43086145  NM_001205272        KRBOX1
21   chr3   41337624       43086145  NM_001251882         VIPR1
26   chr3   41337624       43086145     NM_001296         ACKR2
27   chr3   41337624       43086145  NM_001304386         LYZL4
28   chr3   41337624       43086145  NM_001322500          ULK4
29   chr3   41337624       43086145     NM_004391        CYP8B1
30   chr3   41337624       43086145     NM_005385          NKTR
32   chr3   41337624       43086145     NM_016305        SS18L2
34   chr3   41337624       43086145     NM_020707         HHATL
35   chr3   41337624       43086145     NM_144719        CCDC13
36   chr3   41337624       43086145     NM_145166        ZBTB47
37   chr3   41337624       43086145     NM_152393        KLHL40
40   chr3   41337624       43086145     NR_046654     VIPR1-AS1
41   chr3   41337624       43086145     NR_046732    CCDC13-AS1
42   chr3   41337624       43086145     NR_122033    KRBOX1-AS1
43   chr3   41337624       43086145     NR_122070     LOC729083
44   chr3   41337624       43086145     NR_125400  LOC101928323
45   chr7  110612559      110784242  NM_001099658         LRRN3
46   chr7  110612559      110784242  NM_001244606        IMMP2L
48   chr9     217756         351904  NM_001190458         DOCK8
50   chr9    9847995       10426669     NM_002839         PTPRD
51   chr9   41865830       41971596     NR_003670        FGF7P3
52   chr9   41865830       41971596     NR_015363         GLIDR
55   chr9   67133266       67394692     NR_002817        AQP7P1
56   chr9   67133266       67394692     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143685847      144221839  NM_001123068       PPIAL4G
1    chr1  143685847      144221839  NM_001278267        NBPF20
2    chr1  143685847      144221839  NM_001287385        FAM72C
3    chr1  143685847      144221839  NM_001345942        FAM72D
7    chr1  143685847      144221839     NR_104014     LINC01138
8    chr1  143685847      144221839     NR_111930  LOC100132057
10  chr16   16430831       16828051  NM_001282511        NPIPA8
11  chr16   16430831       16828051     NR_036447        PKD1P1
12  chr16   16430831       16828051     NR_106971     MIR6511A4,    chrom  cnv_start  cnv_terminate    tx_name  gene_name
0  chr11  108538028      108852139  NM_004398      DDX10
1   chr2   51729214       51895314  NR_135237  LOC730100
2  chr22   17267820       17377448  NM_175878       XKR3
3  chr22   17267820       17377448  NR_003607    HSFY1P1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12764479       13054355  NM_001009611       PRAMEF4
1    chr1   12764479       13054355  NM_001010889       PRAMEF6
2    chr1   12764479       13054355  NM_001010890       PRAMEF9
3    chr1   12764479       13054355  NM_001012276       PRAMEF8
4    chr1   12764479       13054355  NM_001013631      HNRNPCL1
5    chr1   12764479       13054355  NM_001080830      PRAMEF12
6    chr1   12764479       13054355  NM_001099850      PRAMEF18
7    chr1   12764479       13054355  NM_001100631      PRAMEF22
8    chr1   12764479       13054355  NM_001103170       AADACL3
9    chr1   12764479       13054355  NM_001146181      HNRNPCL3
10   chr1   12764479       13054355  NM_001146344      PRAMEF11
11   chr1   12764479       13054355  NM_001294139       PRAMEF1
12   chr1   12764479       13054355  NM_001302551      HNRNPCL4
13   chr1   12764479       13054355  NM_001306072      PRAMEF26
14   chr1   12764479       13054355  NM_001310134      PRAMEF25
16   chr1   12764479       13054355     NM_023014       PRAMEF2
17   chr1   12764479       13054355     NM_152290      C1orf158
18   chr1  143097806      143209236     NR_110761  LOC102723769
19  chr14   21774727       21885686  NM_001170629          CHD8
20  chr14   21774727       21885686     NM_007192       SUPT16H
21  chr14   21774727       21885686     NM_020366       RPGRIP1
23  chr14   21774727       21885686     NR_002916        SNORD8
24  chr14   21774727       21885686     NR_003029        SNORD9
25   chr2   75841056       75941192  NM_001201334         GCFC2
28   chr2   75841056       75941192     NM_014763        MRPL19,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   82720368       83005635  NM_001164465     GOLGA6L10
1   chr15   82720368       83005635  NM_001291420      GOLGA6L9
5   chr15   82720368       83005635     NR_026811     GOLGA2P10
7   chr15   82720368       83005635     NR_045529     ADAMTS7P1
8   chr15   82720368       83005635     NR_102747     LOC727751
9   chr15   82720368       83005635     NR_111943         RPS17
11  chr15   82720368       83005635     NR_111962    GOLGA6L17P
12  chr15   82720368       83005635     NR_120378  LOC102724034
13   chr2  186574948      187162786     NM_173651         FSIP2
14   chr2  186574948      187162786     NR_110214  LOC101927196
17   chr2  186574948      187162786     NR_110218     LINC01473
18   chr2  186574948      187162786     NR_144453     FSIP2-AS1
20   chr3    2197103        2363003  NM_001206955         CNTN4
22   chr6    1873896        1976005  NM_001253846          GMDS,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21848231       21954362  NM_001163380      RAB2B
1   chr14   21848231       21954362  NM_001170629       CHD8
2   chr14   21848231       21954362  NM_001303523       TOX4
3   chr14   21848231       21954362     NM_007192    SUPT16H
6   chr14   21848231       21954362     NR_002916     SNORD8
7   chr14   21848231       21954362     NR_003029     SNORD9
8   chr14   42122835       42416820  NM_001346175      LRFN5
9    chr9    2525339        3003922     NM_003383      VLDLR
10   chr9    2525339        3003922     NM_014878       PUM3
11   chr9    2525339        3003922     NM_133497      KCNV2
12   chr9    2525339        3003922     NR_015375  VLDLR-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145293483      145518386  NM_001039888      ANKRD34A
1    chr1  145293483      145518386  NM_001184795        PEX11B
2    chr1  145293483      145518386  NM_001277444         NBPF9
3    chr1  145293483      145518386  NM_001278267        NBPF20
4    chr1  145293483      145518386  NM_001302371        NBPF10
5    chr1  145293483      145518386  NM_001313972         TXNIP
7    chr1  145293483      145518386     NM_005105         RBM8A
9    chr1  145293483      145518386     NM_032305       POLR3GL
10   chr1  145293483      145518386     NM_145277          HFE2
11   chr1  145293483      145518386     NM_153713         LIX1L
12   chr1  145293483      145518386     NR_002328        GNRHR2
16   chr1  145293483      145518386     NR_104217       NBPF25P
17   chr1  145293483      145518386     NR_125967  LOC101928979
18  chr16   16298394       16418396  NM_001004067         NOMO3
19  chr16   16298394       16418396  NM_001079528         ABCC6
21  chr16   16298394       16418396     NR_036140     MIR3179-1
22  chr16   16298394       16418396     NR_036141     MIR3180-1
23  chr16   16298394       16418396     NR_036142     MIR3180-2
24  chr16   16298394       16418396     NR_036447        PKD1P1
25  chr16   16298394       16418396     NR_103772  LOC100288162
26  chr16   16298394       16418396     NR_128713     MIR3670-4
27   chr2   78006940       78165850     NR_110286  LOC101927926
28   chr2   78006940       78165850     NR_110288  LOC101927967
29   chr6   20859147       21002666     NM_017774        CDKAL1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  120567610      120905727  NM_001303113        FAM45A
1   chr10  120567610      120905727     NM_003750         EIF3A
2   chr10  120567610      120905727     NM_199461        NANOS1
3   chr10  120567610      120905727     NR_002917       SNORA19
4   chr10  120567610      120905727     NR_027141       FAM45BP
5   chr10  120567610      120905727     NR_110305         SFXN4
6   chr14   75176085       75289820  NM_001039479         AREL1
7   chr14   75176085       75289820  NM_001318508          FCF1
9   chr14   75176085       75289820     NM_019589         YLPM1
10  chr22   17267029       18003786  NM_001037814          GAB4
11  chr22   17267029       18003786  NM_001163079         CECR6
12  chr22   17267029       18003786  NM_001282227         CECR1
14  chr22   17267029       18003786  NM_001289905        IL17RA
15  chr22   17267029       18003786  NM_001290046         CECR2
17  chr22   17267029       18003786     NM_017829         CECR5
20  chr22   17267029       18003786     NM_175878          XKR3
22  chr22   17267029       18003786     NR_003607       HSFY1P1
23  chr22   17267029       18003786     NR_015352         CECR7
24  chr22   17267029       18003786     NR_024482     CECR5-AS1
25  chr22   17267029       18003786     NR_038398         CECR3
26  chr22   17267029       18003786     NR_103793  LOC100996342
27   chr3   85413842       85691116  NM_001167675         CADM2
29   chr3   85413842       85691116     NR_049870       MIR5688
30   chr3  160124865      160386110  NM_001288753          SMC4
31   chr3  160124865      160386110     NM_002268         KPNA4
33   chr3  160124865      160386110     NM_173084        TRIM59
34   chr3  160124865      160386110     NR_003001       SCARNA7
35   chr5  109589270      109783165  NM_001039763       TMEM232
36   chr7   80088972       80571142     NM_000072          CD36
39   chr7   80088972       80571142  NM_001102386         GNAT3
45   chr7   80088972       80571142     NM_006379        SEMA3C
46   chr8   87959661       88151091     NM_173538         CNBD1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21790161       21934868  NM_001163380     RAB2B
1   chr14   21790161       21934868  NM_001170629      CHD8
2   chr14   21790161       21934868     NM_007192   SUPT16H
3   chr14   21790161       21934868     NM_020366   RPGRIP1
6   chr14   21790161       21934868     NR_002916    SNORD8
7   chr14   21790161       21934868     NR_003029    SNORD9
8   chr19   47795561       48117417  NM_001009813     MEIS3
9   chr19   47795561       48117417  NM_001271749     C5AR2
11  chr19   47795561       48117417  NM_001277075    ZNF541
12  chr19   47795561       48117417  NM_001291296      KPTN
15  chr19   47795561       48117417     NM_001736     C5AR1
16  chr19   47795561       48117417     NM_014681     DHX34
17  chr19   47795561       48117417     NM_015063    SLC8A2
18  chr19   47795561       48117417     NM_015711   GLTSCR1
20  chr19   47795561       48117417     NR_038452  NAPA-AS1
21  chr19   47795561       48117417     NR_038457      NAPA
22   chr7  110699567      110867471  NM_001099658     LRRN3
23   chr7  110699567      110867471  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21942519       22250390  NM_001001912     OR4E2
1  chr14   21942519       22250390  NM_001005465    OR10G3
2  chr14   21942519       22250390  NM_001005466    OR10G2
3  chr14   21942519       22250390  NM_001163380     RAB2B
4  chr14   21942519       22250390  NM_001303523      TOX4
5  chr14   21942519       22250390  NM_001317107     OR4E1
6  chr14   21942519       22250390     NM_019852    METTL3
8  chr14   21942519       22250390     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  142717824      144836953  NM_001123068       PPIAL4G
1    chr1  142717824      144836953  NM_001135789       PPIAL4C
2    chr1  142717824      144836953  NM_001277444         NBPF9
3    chr1  142717824      144836953  NM_001278267        NBPF20
4    chr1  142717824      144836953  NM_001287385        FAM72C
5    chr1  142717824      144836953  NM_001345942        FAM72D
9    chr1  142717824      144836953     NR_003242        PFN1P2
10   chr1  142717824      144836953     NR_024511     LINC00623
12   chr1  142717824      144836953     NR_102405         NBPF8
13   chr1  142717824      144836953     NR_104014     LINC01138
14   chr1  142717824      144836953     NR_106967       MIR6077
15   chr1  142717824      144836953     NR_110761  LOC102723769
16   chr1  142717824      144836953     NR_111930  LOC100132057
17   chr1  142717824      144836953     NR_111953     LINC00869
19  chr11   60272356       60484532  NM_001278320        MS4A13
20  chr11   60272356       60484532     NM_017716        MS4A12
21  chr11   60272356       60484532     NM_031457         MS4A8
22  chr11   60272356       60484532     NR_026946     LINC00301
23  chr15   28719002       28832526     NR_033351       GOLGA8F
24  chr15   28719002       28832526     NR_033353       GOLGA8G
25  chr15   28719002       28832526     NR_039734     MIR4509-3
26   chr2  185142374      185247993     NR_039638     MIR548AE1
27   chr5   99764134       99906205     NM_198507       FAM174A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145286856      145418172  NM_001277444         NBPF9
1    chr1  145286856      145418172  NM_001278267        NBPF20
2    chr1  145286856      145418172  NM_001302371        NBPF10
3    chr1  145286856      145418172     NM_145277          HFE2
4    chr1  145286856      145418172     NR_104217       NBPF25P
5    chr1  145286856      145418172     NR_125967  LOC101928979
6   chr10    7137263        7549861  NM_001018039        SFMBT2
8   chr10    7137263        7549861     NR_132972      SNORD129
9   chr11   31394310       31519033  NM_001304274        IMMP1L
10  chr11   31394310       31519033     NM_181706       DNAJC24
11  chr22   17181733       17440878     NM_175878          XKR3
12  chr22   17181733       17440878     NR_003607       HSFY1P1
13  chr22   17181733       17440878     NR_134584  LOC101929350,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81445999       81569945  NM_001278495        NUTM2B
1   chr10   81445999       81569945     NR_027512       BEND3P3
2   chr10   81445999       81569945     NR_120611    NUTM2B-AS1
5    chr2  186271423      186734283     NM_173651         FSIP2
6    chr2  186271423      186734283     NR_110214  LOC101927196
9    chr2  186271423      186734283     NR_144453     FSIP2-AS1
11   chr4   69150636       69307134  NM_001031732        YTHDC1
12   chr7   80160784       80639367     NM_000072          CD36
20   chr7   80160784       80639367     NM_006379        SEMA3C,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21938924       22161580  NM_001001912         OR4E2
1   chr14   21938924       22161580  NM_001005465        OR10G3
2   chr14   21938924       22161580  NM_001005466        OR10G2
3   chr14   21938924       22161580  NM_001163380         RAB2B
4   chr14   21938924       22161580  NM_001303523          TOX4
5   chr14   21938924       22161580  NM_001317107         OR4E1
6   chr14   21938924       22161580     NM_019852        METTL3
8   chr14   21938924       22161580     NR_111966         SALL2
10  chr15   28556860       28669743     NM_004667         HERC2
11  chr15   28556860       28669743     NR_033351       GOLGA8F
12  chr15   28556860       28669743     NR_033353       GOLGA8G
13  chr16   76813487       76943278     NR_039870       MIR4719
14  chr20   14711777       14994616     NM_080676       MACROD2
15  chr20   14711777       14994616     NR_037841   MACROD2-AS1
17   chr5   17481561       17623605     NR_134270  LOC102723526
18   chr7  110649026      110827036  NM_001099658         LRRN3
19   chr7  110649026      110827036  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21806212       21970261  NM_001163380        RAB2B
1   chr14   21806212       21970261  NM_001170629         CHD8
2   chr14   21806212       21970261  NM_001303523         TOX4
3   chr14   21806212       21970261     NM_007192      SUPT16H
4   chr14   21806212       21970261     NM_019852       METTL3
5   chr14   21806212       21970261     NM_020366      RPGRIP1
8   chr14   21806212       21970261     NR_002916       SNORD8
9   chr14   21806212       21970261     NR_003029       SNORD9
10  chr14   21789954       22092047  NM_001005465       OR10G3
11  chr14   21789954       22092047  NM_001163380        RAB2B
12  chr14   21789954       22092047  NM_001170629         CHD8
13  chr14   21789954       22092047  NM_001303523         TOX4
14  chr14   21789954       22092047     NM_007192      SUPT16H
15  chr14   21789954       22092047     NM_019852       METTL3
16  chr14   21789954       22092047     NM_020366      RPGRIP1
19  chr14   21789954       22092047     NR_002916       SNORD8
20  chr14   21789954       22092047     NR_003029       SNORD9
21  chr14   21789954       22092047     NR_111966        SALL2
23   chr3    4163766        5721452  NM_001164675        SUMF1
24   chr3    4163766        5721452  NM_001168272        ITPR1
25   chr3    4163766        5721452  NM_001243723       SETMAR
27   chr3    4163766        5721452     NM_003670      BHLHE40
28   chr3    4163766        5721452     NM_014674        EDEM1
29   chr3    4163766        5721452     NM_018184        ARL8B
30   chr3    4163766        5721452     NR_004428         EGOT
31   chr3    4163766        5721452     NR_037903  BHLHE40-AS1
32   chr3    4163766        5721452     NR_039953      MIR4790
33   chr3    4163766        5721452     NR_108075    ITPR1-AS1
35   chr7    4301872        4633206  NM_001079653         SDK1
37   chr8     447500         555944  NM_001256113         TDRP,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11   40310770       40723368  NM_001258419         LRRC4C
2   chr12   71437804       71741239     NM_004616         TSPAN8
3   chr14   78403120       78720960     NR_073547          NRXN3
4   chr16    8577357        8795469  NM_001146336        TMEM114
7   chr16    8577357        8795469     NM_020686           ABAT
8   chr16    8577357        8795469     NM_024109        METTL22
10  chr16   15219349       15562849  NM_001128423         MPV17L
11  chr16   15219349       15562849  NM_001277325         NPIPA5
12  chr16   15219349       15562849  NM_001285449         PDXDC1
14  chr16   15219349       15562849     NM_033201       C16orf45
15  chr16   15219349       15562849     NR_037466      MIR3180-4
16  chr16   15219349       15562849     NR_106775      MIR6511B1
17  chr16   15219349       15562849     NR_106965      MIR6511B2
18  chr16   15219349       15562849     NR_123721  PKD1P6-NPIPP1
20   chr2   49053313       50610999  NM_001320157          NRXN1
24   chr2   49053313       50610999     NM_181446           FSHR
25   chr2   49053313       50610999     NR_107011       MIR548BA
26  chr20   14655220       15124897     NM_080676        MACROD2
27  chr20   14655220       15124897     NR_037841    MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   37453684       38140797  NM_001190489   MTRNR2L7
1   chr10   37453684       38140797  NM_001267597     ZNF248
4   chr10   37453684       38140797     NM_052997   ANKRD30A
5   chr10   37453684       38140797     NR_051997   ZNF33BP1
6   chr10   37453684       38140797     NR_104061  LINC00993
7   chr11   89117206       89237784  NM_001143837       NOX4
13  chr22   17266833       17369758     NM_175878       XKR3
14  chr22   17266833       17369758     NR_003607    HSFY1P1
15   chr7  110564754      111027614  NM_001099658      LRRN3
16   chr7  110564754      111027614  NM_001244606     IMMP2L
18   chr9     174260         435419  NM_001145355      CBWD1
19   chr9     174260         435419  NM_001190458      DOCK8
20   chr9     174260         435419     NM_152569    C9orf66
22   chr9   41484055       41597951  NM_001113541  SPATA31A5
23   chr9   41484055       41597951     NM_015667  SPATA31A7
24   chr9   41484055       41597951     NR_003528    ZNF658B
25   chr9   41484055       41597951     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   16654844       16927182  NM_001114600         SZRD1
1    chr1   16654844       16927182  NM_001145277        NECAP2
2    chr1   16654844       16927182  NM_001310155       FAM231B
3    chr1   16654844       16927182     NM_017940         NBPF1
4    chr1   16654844       16927182     NM_018994        FBXO42
5    chr1   16654844       16927182     NM_198546       SPATA21
6    chr1   16654844       16927182     NR_023386       CROCCP3
7    chr1   16654844       16927182     NR_037446       MIR3675
8    chr1   16654844       16927182     NR_135764  LOC100132147
9    chr1   16654844       16927182     NR_135765     LOC440570
10  chr14   21942133       22066018  NM_001005465        OR10G3
11  chr14   21942133       22066018  NM_001163380         RAB2B
12  chr14   21942133       22066018  NM_001303523          TOX4
13  chr14   21942133       22066018     NM_019852        METTL3
15  chr14   21942133       22066018     NR_111966         SALL2
17   chr7  110648496      110759365  NM_001099658         LRRN3
18   chr7  110648496      110759365  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   22405113       22518801     NR_047040     LINC00424
1   chr15   28443702       29065221  NM_001282468       GOLGA8M
2   chr15   28443702       29065221     NM_004667         HERC2
3   chr15   28443702       29065221     NR_026589       WHAMMP2
4   chr15   28443702       29065221     NR_033351       GOLGA8F
6   chr15   28443702       29065221     NR_033353       GOLGA8G
8   chr15   28443702       29065221     NR_036443       HERC2P9
9   chr15   28443702       29065221     NR_036475  LOC100289656
10  chr15   28443702       29065221     NR_037599     PDCD6IPP2
11  chr15   28443702       29065221     NR_039734     MIR4509-3
13  chr22   19896983       20003416     NM_000754          COMT
16  chr22   19896983       20003416  NM_001282512        TXNRD2
17  chr22   19896983       20003416     NM_001670         ARVCF
20  chr22   19896983       20003416     NR_039918       MIR4761,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr1  143692808      143978381  NM_001123068       PPIAL4G
1  chr1  143692808      143978381  NM_001287385        FAM72C
2  chr1  143692808      143978381  NM_001345942        FAM72D
6  chr1  143692808      143978381     NR_104014     LINC01138
7  chr1  143692808      143978381     NR_111930  LOC100132057,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143114960      143317789     NR_110761  LOC102723769
1    chr1  145274425      145384149  NM_001277444         NBPF9
2    chr1  145274425      145384149  NM_001278267        NBPF20
3    chr1  145274425      145384149  NM_001302371        NBPF10
4    chr1  145274425      145384149     NM_203458      NOTCH2NL
5    chr1  145274425      145384149     NR_104217       NBPF25P
6    chr1  145274425      145384149     NR_125967  LOC101928979
7   chr10  135245703      135347748     NM_000773        CYP2E1
8   chr10  135245703      135347748     NR_002934        SCART1
9   chr15   24386794       24505242     NR_026647         PWRN2
10  chr15   99893163      100203352  NM_001130928         MEF2A
11  chr15   99893163      100203352  NM_001284400        LRRC28
14  chr16   18391456       18533919  NM_001004060         NOMO2
15  chr16   18391456       18533919  NM_001282511        NPIPA8
16  chr16   18391456       18533919     NR_036140     MIR3179-1
17  chr16   18391456       18533919     NR_036142     MIR3180-2
18  chr16   18391456       18533919     NR_036144     MIR3180-3
19  chr16   18391456       18533919     NR_037442     MIR3670-1
20  chr16   18391456       18533919     NR_103772  LOC100288162
21  chr16   18391456       18533919     NR_106971     MIR6511A4
22  chr16   18391456       18533919     NR_107060     MIR6770-2
23  chr16   29529354       29947678  NM_001030288           SPN
24  chr16   29529354       29947678  NM_001114099        SEZ6L2
25  chr16   29529354       29947678  NM_001256269         KIF22
27  chr16   29529354       29947678  NM_001256443         PRRT2
28  chr16   29529354       29947678  NM_001276275           MAZ
29  chr16   29529354       29947678  NM_001286585         CDIPT
30  chr16   29529354       29947678  NM_001293204           MVP
31  chr16   29529354       29947678  NM_001318249          QPRT
35  chr16   29529354       29947678     NM_024516         PAGR1
36  chr16   29529354       29947678     NM_152338          ZG16
37  chr16   29529354       29947678     NM_175900      C16orf54
38  chr16   29529354       29947678     NM_178863        KCTD13
39  chr16   29529354       29947678     NM_181718        ASPHD1
40  chr16   29529354       29947678     NR_015396     CDIPT-AS1
42  chr16   29529354       29947678     NR_049833     MIR3680-2
43  chr16   29529354       29947678     NR_135305        SMG1P2
45   chr7   69273947       69377799  NM_001127231         AUTS2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10   68015368       68329377  NM_001127384     CTNNA3
2   chr14   21799302       22196522  NM_001001912      OR4E2
3   chr14   21799302       22196522  NM_001005465     OR10G3
4   chr14   21799302       22196522  NM_001005466     OR10G2
5   chr14   21799302       22196522  NM_001163380      RAB2B
6   chr14   21799302       22196522  NM_001170629       CHD8
7   chr14   21799302       22196522  NM_001303523       TOX4
8   chr14   21799302       22196522  NM_001317107      OR4E1
9   chr14   21799302       22196522     NM_007192    SUPT16H
10  chr14   21799302       22196522     NM_019852     METTL3
11  chr14   21799302       22196522     NM_020366    RPGRIP1
14  chr14   21799302       22196522     NR_002916     SNORD8
15  chr14   21799302       22196522     NR_003029     SNORD9
16  chr14   21799302       22196522     NR_111966      SALL2
18  chr15   99902871      100065188  NM_001284400     LRRC28
20   chr4   93973129       94158980     NM_001510      GRID2
21   chr9   15003889       15128677     NR_003920  LOC389705,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  108400367      108534341     NM_006113       VAV3
1    chr1  108400367      108534341     NR_046653   VAV3-AS1
2    chr1  108400367      108534341     NR_107006    MIR7852
3   chr22   19043315       19277178  NM_001184781      DGCR2
4   chr22   19043315       19277178  NM_001256534    SLC25A1
5   chr22   19043315       19277178     NM_001835     CLTCL1
6   chr22   19043315       19277178     NM_005315       GSC2
8   chr22   19043315       19277178     NM_022719     DGCR14
9   chr22   19043315       19277178     NM_053006      TSSK2
10  chr22   19043315       19277178     NR_103767  LINC01311
11   chr3   60343048       60468387  NM_001320899       FHIT
12   chr5   17755812       17933522     NR_134286  LOC646241
14   chr7   80040117       80195588  NM_001102386      GNAT3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10  134077104      134187489  NM_001143757    LRRC27
3   chr10  134077104      134187489  NM_001318878    STK32C
10  chr14   21833025       21936461  NM_001163380     RAB2B
11  chr14   21833025       21936461  NM_001170629      CHD8
12  chr14   21833025       21936461     NM_007192   SUPT16H
15  chr14   21833025       21936461     NR_002916    SNORD8
16  chr14   21833025       21936461     NR_003029    SNORD9
17   chr2   50809192       50919237  NM_001330082     NRXN1
18   chr3   60371312       60603091  NM_001320899      FHIT
19   chr5  109814271      109948448  NM_001039763   TMEM232
20   chr5  109814271      109948448     NR_031644  MIR548F3, Empty DataFrame
Columns: [chrom, cnv_start, cnv_terminate, tx_name, gene_name]
Index: [],     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr16   21705728       22360331  NM_001161683       OTOA
1   chr16   21705728       22360331  NM_001164579   C16orf52
2   chr16   21705728       22360331  NM_001258033     POLR3E
3   chr16   21705728       22360331  NM_001310148     NPIPB4
4   chr16   21705728       22360331     NM_001802       CDR2
5   chr16   21705728       22360331     NM_003366     UQCRC2
6   chr16   21705728       22360331     NM_013302      EEF2K
9   chr16   21705728       22360331     NM_173615      VWA3A
10  chr16   21705728       22360331     NM_173806      PDZD9
11  chr16   21705728       22360331     NR_003370     RRN3P1
12   chr9   30341656       30466995     NR_046204  LINC01242,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr10  117313301      117619056     NM_207303        ATRNL1
1  chr16    6533709        6641410  NM_001308117        RBFOX1
3   chr2   78244634       78477446     NR_110287  LOC101927948
4   chr2   78244634       78477446     NR_110288  LOC101927967,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21879046       22126003  NM_001005465    OR10G3
1   chr14   21879046       22126003  NM_001005466    OR10G2
2   chr14   21879046       22126003  NM_001163380     RAB2B
3   chr14   21879046       22126003  NM_001170629      CHD8
4   chr14   21879046       22126003  NM_001303523      TOX4
5   chr14   21879046       22126003     NM_019852    METTL3
8   chr14   21879046       22126003     NR_111966     SALL2
10  chr16   15373938       15894499  NM_001040113     MYH11
11  chr16   15373938       15894499  NM_001128423    MPV17L
12  chr16   15373938       15894499  NM_001142469  C16orf45
13  chr16   15373938       15894499  NM_001143979      NDE1
14  chr16   15373938       15894499  NM_001184998  KIAA0430
15  chr16   15373938       15894499  NM_001277325    NPIPA5
18  chr16   15373938       15894499     NR_030159    MIR484
19  chr16   15373938       15894499     NR_106761   MIR6506
20   chr3  105352239      105633108  NM_001321786      CBLB,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21820952       21996768  NM_001163380     RAB2B
1  chr14   21820952       21996768  NM_001170629      CHD8
2  chr14   21820952       21996768  NM_001303523      TOX4
3  chr14   21820952       21996768     NM_007192   SUPT16H
4  chr14   21820952       21996768     NM_019852    METTL3
7  chr14   21820952       21996768     NR_002916    SNORD8
8  chr14   21820952       21996768     NR_003029    SNORD9
9  chr14   21820952       21996768     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr10    6733201        6878405     NR_038291  LINC00707
1   chr10    6733201        6878405     NR_108074  LINC00706
2   chr10    6733201        6878405     NR_138480      LINP1
3   chr14   21821017       21954817  NM_001163380      RAB2B
4   chr14   21821017       21954817  NM_001170629       CHD8
5   chr14   21821017       21954817  NM_001303523       TOX4
6   chr14   21821017       21954817     NM_007192    SUPT16H
9   chr14   21821017       21954817     NR_002916     SNORD8
10  chr14   21821017       21954817     NR_003029     SNORD9
11   chr4    8991149       10377611     NM_000798       DRD5
12   chr4    8991149       10377611  NM_001001290     SLC2A9
13   chr4    8991149       10377611  NM_001040448    DEFB131
14   chr4    8991149       10377611  NM_001242326   USP17L25
22   chr4    8991149       10377611  NM_001256852   USP17L10
23   chr4    8991149       10377611  NM_001256853   USP17L12
25   chr4    8991149       10377611  NM_001256854   USP17L11
28   chr4    8991149       10377611  NM_001256855   USP17L13
29   chr4    8991149       10377611  NM_001256857   USP17L17
30   chr4    8991149       10377611  NM_001256860   USP17L19
31   chr4    8991149       10377611  NM_001256861   USP17L20
32   chr4    8991149       10377611  NM_001256894   USP17L15
33   chr4    8991149       10377611     NM_005112       WDR1
35   chr4    8991149       10377611     NR_027279   USP17L6P
36   chr4    8991149       10377611     NR_031688   MIR548I2
37   chr4    8991149       10377611     NR_036090    MIR3138
38   chr4    8991149       10377611     NR_046416   USP17L9P,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   49623292       49828298  NM_001323575         AGBL4
1    chr1   49623292       49828298     NR_125988  LOC101929721
2   chr10   19630664       19833469  NM_001142308        MALRD1
3   chr12   62504224       62913520  NM_001252079         USP15
4   chr12   62504224       62913520  NM_001278469          MON2
6   chr12   62504224       62913520     NM_178539       FAM19A2
7   chr12   62504224       62913520     NR_106740       MIR6125
8   chr14   21813110       22070579  NM_001005465        OR10G3
9   chr14   21813110       22070579  NM_001163380         RAB2B
10  chr14   21813110       22070579  NM_001170629          CHD8
11  chr14   21813110       22070579  NM_001303523          TOX4
12  chr14   21813110       22070579     NM_007192       SUPT16H
13  chr14   21813110       22070579     NM_019852        METTL3
14  chr14   21813110       22070579     NM_020366       RPGRIP1
17  chr14   21813110       22070579     NR_002916        SNORD8
18  chr14   21813110       22070579     NR_003029        SNORD9
19  chr14   21813110       22070579     NR_111966         SALL2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11    4282643        4668116  NM_001004137     OR52M1
1   chr11    4282643        4668116  NM_001004751     OR51D1
2   chr11    4282643        4668116  NM_001005161     OR52B4
3   chr11    4282643        4668116  NM_001005169     OR52I1
4   chr11    4282643        4668116  NM_001005170     OR52I2
5   chr11    4282643        4668116  NM_001005171     OR52K1
6   chr11    4282643        4668116  NM_001005172     OR52K2
7   chr11    4282643        4668116     NM_003141     TRIM21
8   chr11    4282643        4668116     NM_018073     TRIM68
9   chr11    4282643        4668116     NM_144663   C11orf40
10  chr11    4282643        4668116     NM_152430     OR51E1
11  chr12   62427521       62530681     NM_178539    FAM19A2
12  chr14   21759836       22064920  NM_001005465     OR10G3
13  chr14   21759836       22064920  NM_001163380      RAB2B
14  chr14   21759836       22064920  NM_001170629       CHD8
15  chr14   21759836       22064920  NM_001303523       TOX4
16  chr14   21759836       22064920     NM_007192    SUPT16H
17  chr14   21759836       22064920     NM_019852     METTL3
18  chr14   21759836       22064920     NM_020366    RPGRIP1
21  chr14   21759836       22064920     NR_002916     SNORD8
22  chr14   21759836       22064920     NR_003029     SNORD9
23  chr14   21759836       22064920     NR_111966      SALL2
25  chr15   28206331       28311039     NM_000275       OCA2
27   chr4   69197201       69368700  NM_001031732     YTHDC1
28   chr4   69197201       69368700     NM_014058  TMPRSS11E
29   chr4  128423022      128757481  NM_001317381     HSPA4L
32   chr4  128423022      128757481  NM_001318467   SLC25A31
33   chr4  128423022      128757481     NM_015693       INTU,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr20   14714132       14995046     NM_080676       MACROD2
1   chr20   14714132       14995046     NR_037841   MACROD2-AS1
3   chr22   17187569       18203906  NM_001037814          GAB4
4   chr22   17187569       18203906  NM_001163079         CECR6
5   chr22   17187569       18203906  NM_001270733       BCL2L13
6   chr22   17187569       18203906  NM_001282227         CECR1
8   chr22   17187569       18203906  NM_001288707  LOC101929372
9   chr22   17187569       18203906  NM_001289905        IL17RA
10  chr22   17187569       18203906  NM_001290046         CECR2
12  chr22   17187569       18203906  NM_001303484      SLC25A18
13  chr22   17187569       18203906     NM_001696      ATP6V1E1
15  chr22   17187569       18203906     NM_017829         CECR5
18  chr22   17187569       18203906     NM_175878          XKR3
20  chr22   17187569       18203906     NR_003607       HSFY1P1
21  chr22   17187569       18203906     NR_015352         CECR7
22  chr22   17187569       18203906     NR_024482     CECR5-AS1
23  chr22   17187569       18203906     NR_038398         CECR3
25  chr22   17187569       18203906     NR_103793  LOC100996342
26  chr22   17187569       18203906     NR_134584  LOC101929350
27   chr5   28282794       28382813     NR_134265  LOC105374698
28   chr7    6844260        7188311     NM_198097         CCZ1B
29   chr7    6844260        7188311     NR_034022  LOC100131257
30   chr7    6844260        7188311     NR_037454       MIR3683
31   chr7   77806691       77913487     NM_012301         MAGI2
32   chr7  124888746      125027615     NR_110183  LOC101928254
33   chr7  124888746      125027615     NR_110188  LOC101928283,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21752514       21855950  NM_001170629          CHD8
1   chr14   21752514       21855950     NM_007192       SUPT16H
2   chr14   21752514       21855950     NM_020366       RPGRIP1
4   chr16    6724028        6905437  NM_001142334        RBFOX1
7   chr16   16386489       17704288  NM_001004067         NOMO3
8   chr16   16386489       17704288  NM_001282511        NPIPA8
9   chr16   16386489       17704288     NM_022166         XYLT1
10  chr16   16386489       17704288     NR_036140     MIR3179-1
11  chr16   16386489       17704288     NR_036141     MIR3180-1
12  chr16   16386489       17704288     NR_036142     MIR3180-2
13  chr16   16386489       17704288     NR_036447        PKD1P1
14  chr16   16386489       17704288     NR_103772  LOC100288162
15  chr16   16386489       17704288     NR_106766     MIR6511A1
16  chr16   16386489       17704288     NR_106971     MIR6511A4
17  chr16   16386489       17704288     NR_107060     MIR6770-2
18  chr16   16386489       17704288     NR_128713     MIR3670-4
19  chr16   16386489       17704288     NR_135179  LOC102723692
20   chr6  162462154      163073265     NM_013988         PARK2
21   chr9   41793380       42357902     NR_003670        FGF7P3
22   chr9   41793380       42357902     NR_015363         GLIDR
25   chr9   41793380       42357902     NR_126048  LOC102724238
26   chr9   41793380       42357902     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   67701846       67808390  NM_001127384        CTNNA3
2   chr11   25103210       25357308  NM_001009909         LUZP2
3   chr16   15431975       17310891  NM_001004067         NOMO3
4   chr16   15431975       17310891  NM_001040113         MYH11
5   chr16   15431975       17310891  NM_001079528         ABCC6
6   chr16   15431975       17310891  NM_001128423        MPV17L
7   chr16   15431975       17310891  NM_001142469      C16orf45
8   chr16   15431975       17310891  NM_001143979          NDE1
10  chr16   15431975       17310891  NM_001184998      KIAA0430
11  chr16   15431975       17310891  NM_001277325        NPIPA5
12  chr16   15431975       17310891  NM_001282511        NPIPA8
13  chr16   15431975       17310891     NM_004996         ABCC1
15  chr16   15431975       17310891     NM_022166         XYLT1
17  chr16   15431975       17310891     NR_030159        MIR484
18  chr16   15431975       17310891     NR_036140     MIR3179-1
19  chr16   15431975       17310891     NR_036141     MIR3180-1
20  chr16   15431975       17310891     NR_036142     MIR3180-2
21  chr16   15431975       17310891     NR_036447        PKD1P1
22  chr16   15431975       17310891     NR_103772  LOC100288162
23  chr16   15431975       17310891     NR_106761       MIR6506
24  chr16   15431975       17310891     NR_106766     MIR6511A1
25  chr16   15431975       17310891     NR_106971     MIR6511A4
26  chr16   15431975       17310891     NR_107060     MIR6770-2
27  chr16   15431975       17310891     NR_128713     MIR3670-4
28  chr16   15431975       17310891     NR_130755         FOPNL
29  chr16   15431975       17310891     NR_135179  LOC102723692
30  chr16   61073050       61232542     NR_039624       MIR4426,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21820450       22055510  NM_001005465     OR10G3
1   chr14   21820450       22055510  NM_001163380      RAB2B
2   chr14   21820450       22055510  NM_001170629       CHD8
3   chr14   21820450       22055510  NM_001303523       TOX4
4   chr14   21820450       22055510     NM_007192    SUPT16H
5   chr14   21820450       22055510     NM_019852     METTL3
8   chr14   21820450       22055510     NR_002916     SNORD8
9   chr14   21820450       22055510     NR_003029     SNORD9
10  chr14   21820450       22055510     NR_111966      SALL2
12   chr7  152305667      152425612     NM_005431      XRCC2
13   chr7  152369498      153109619     NM_005431      XRCC2
14   chr7  152369498      153109619     NM_020445     ACTR3B
15   chr7  152369498      153109619     NR_125776  LINC01287
16   chr9   30345257       30451963     NR_046204  LINC01242
17   chr9   41568073       41912680     NR_003528    ZNF658B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   76052223       76224846     NM_000016         ACADM
1    chr1   76052223       76224846  NM_001130058       SLC44A5
5    chr1   76052223       76224846     NR_130749        DLSTP1
6   chr16   68566665       68974542  NM_001305204         ZFP90
8   chr16   68566665       68974542  NM_001317184          CDH1
9   chr16   68566665       68974542  NM_001317195          CDH3
10  chr16   68566665       68974542     NM_024562        TANGO6
11  chr16   68566665       68974542     NR_106988     MIR7641-2
12   chr2   34155593       34264828     NR_126403     LINC01317
13  chr20   14824057       15401958  NM_001033087       MACROD2
15  chr20   14824057       15401958     NR_037841   MACROD2-AS1
17  chr22   17216285       17432118     NM_175878          XKR3
18  chr22   17216285       17432118     NR_003607       HSFY1P1
19  chr22   17216285       17432118     NR_134584  LOC101929350
20   chr4  188292532      188571171     NR_038931     LOC339975
21   chr4  188292532      188571171     NR_110436  LOC100506272
22   chr9   16757542       16881489     NM_017637          BNC2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21785557       21969068  NM_001163380        RAB2B
1   chr14   21785557       21969068  NM_001170629         CHD8
2   chr14   21785557       21969068  NM_001303523         TOX4
3   chr14   21785557       21969068     NM_007192      SUPT16H
4   chr14   21785557       21969068     NM_019852       METTL3
5   chr14   21785557       21969068     NM_020366      RPGRIP1
8   chr14   21785557       21969068     NR_002916       SNORD8
9   chr14   21785557       21969068     NR_003029       SNORD9
10  chr15   59961517       60078377  NM_001320674        BNIP2
12   chr2   50788867       50948423  NM_001330082        NRXN1
13   chr2   50788867       50948423     NR_130470      MIR8485
14  chr20   14775967       14989367     NM_080676      MACROD2
15  chr20   14775967       14989367     NR_037841  MACROD2-AS1
17  chr21   28173874       28312802     NM_006988      ADAMTS1
18  chr21   28173874       28312802     NM_007038      ADAMTS5
19   chr9   28505361       28693979  NM_001258282       LINGO2,     chrom  cnv_start  cnv_terminate       tx_name          gene_name
0    chr1   49113614       49314979  NM_001302082              BEND5
1    chr1   49113614       49314979  NM_001323575              AGBL4
2    chr1  143693528      143804275  NM_001123068            PPIAL4G
3    chr1  143693528      143804275     NR_104014          LINC01138
4    chr1  143693528      143804275     NR_111930       LOC100132057
5   chr15   52802330       53079724  NM_001142495              MYO5A
6   chr15   52802330       53079724  NM_001286495            FAM214A
7   chr15   52802330       53079724  NM_001306191             ARPP19
11  chr15   52802330       53079724     NM_004498            ONECUT1
14  chr17   14150074       14287002     NM_006041           HS3ST3B1
15  chr17   14150074       14287002     NR_026880           MGC12916
16  chr18   63798416       64179517     NM_021153              CDH19
17  chr22   17064545       17312897     NM_014406             CCT8L2
18  chr22   17064545       17312897     NM_175878               XKR3
19  chr22   17064545       17312897     NR_001591             TPTEP1
20  chr22   17064545       17312897     NR_003607            HSFY1P1
21  chr22   17064545       17312897     NR_040115  ANKRD62P1-PARP4P3
22  chr22   17064545       17312897     NR_134584       LOC101929350
23   chr4   69289434       69549775     NM_001076            UGT2B15
24   chr4   69289434       69549775     NM_001077            UGT2B17
25   chr4   69289434       69549775     NM_014058          TMPRSS11E
26   chr4  169195400      169371216  NM_001012967             DDX60L
28   chr4  169195400      169371216     NM_017631              DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   98197878       98701863     NM_183376        ARRDC4
1   chr15   98197878       98701863     NR_024172     LINC00923
2   chr15   98197878       98701863     NR_120325     LINC01582
3    chr5  152198034      152478339     NR_109877     LINC01470
4    chr7   16652884       16773334  NM_001159767          BZW2
5    chr7   16652884       16773334     NM_020319        ANKMY2
6    chr8   16012866       16118485     NM_002445          MSR1
8    chr9    5944150        6227643  NM_001017969      KIAA2026
9    chr9    5944150        6227643  NM_001199641          IL33
10   chr9    5944150        6227643  NM_001243202        RANBP6
12   chr9    5944150        6227643     NR_039811       MIR4665
13   chr9   67043746       67438570     NR_002817        AQP7P1
14   chr9   67043746       67438570     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143539971      143905995  NM_001123068       PPIAL4G
1    chr1  143539971      143905995  NM_001287385        FAM72C
2    chr1  143539971      143905995  NM_001345942        FAM72D
6    chr1  143539971      143905995     NR_104014     LINC01138
7    chr1  143539971      143905995     NR_106967       MIR6077
8    chr1  143539971      143905995     NR_111930  LOC100132057
10  chr12   72597429       73062383     NM_013381         TRHDE
11  chr12   72597429       73062383     NR_026836     TRHDE-AS1
13  chr16   68613849       70284495     NM_000903          NQO1
14  chr16   68613849       70284495  NM_001039690         CHTF8
16  chr16   68613849       70284495  NM_001136214       CLEC18A
17  chr16   68613849       70284495  NM_001199280          HAS3
18  chr16   68613849       70284495  NM_001199434          NIP7
19  chr16   68613849       70284495  NM_001270453          WWP2
24  chr16   68613849       70284495  NM_001317184          CDH1
25  chr16   68613849       70284495  NM_001317195          CDH3
27  chr16   68613849       70284495     NM_005652         TERF2
28  chr16   68613849       70284495     NM_006750         SNTB2
29  chr16   68613849       70284495     NM_013245         VPS4A
30  chr16   68613849       70284495     NM_017990          PDPR
31  chr16   68613849       70284495     NM_022341           PDF
32  chr16   68613849       70284495     NM_024562        TANGO6
33  chr16   68613849       70284495     NM_030579         CYB5B
34  chr16   68613849       70284495     NM_032382          COG8
35  chr16   68613849       70284495     NM_032830          UTP4
36  chr16   68613849       70284495     NM_058219        EXOSC6
38  chr16   68613849       70284495     NM_144676         TMED6
39  chr16   68613849       70284495     NM_173214         NFAT5
41  chr16   68613849       70284495     NM_173619       CLEC18C
44  chr16   68613849       70284495     NR_003610       PDXDC2P
45  chr16   68613849       70284495     NR_029681        MIR140
46  chr16   68613849       70284495     NR_031719       MIR1538
47  chr16   68613849       70284495     NR_033959        SMG1P7
48  chr16   68613849       70284495     NR_036265     MIR1972-2
49  chr16   68613849       70284495     NR_074074          NOB1
50  chr16   68613849       70284495     NR_106988     MIR7641-2
51  chr16   68613849       70284495     NR_126007     LOC400541
52  chr16   68613849       70284495     NR_135173  LOC105371328
53   chr3  162885846      163151589     NR_033945     LINC01192
54   chr7  121621107      121841054  NM_001206838        PTPRZ1
55   chr7  121621107      121841054     NM_005763          AASS,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr21   22657829       22806609     NM_004540         NCAM2
1   chr22   17247609       17837648  NM_001037814          GAB4
2   chr22   17247609       17837648  NM_001163079         CECR6
3   chr22   17247609       17837648  NM_001282227         CECR1
5   chr22   17247609       17837648  NM_001289905        IL17RA
6   chr22   17247609       17837648     NM_017829         CECR5
9   chr22   17247609       17837648     NM_175878          XKR3
11  chr22   17247609       17837648     NR_003607       HSFY1P1
12  chr22   17247609       17837648     NR_015352         CECR7
13  chr22   17247609       17837648     NR_024482     CECR5-AS1
14  chr22   17247609       17837648     NR_038398         CECR3
15  chr22   17247609       17837648     NR_103793  LOC100996342,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  108385164      108486433     NM_006113          VAV3
1    chr1  108385164      108486433     NR_107006       MIR7852
2    chr1  144694396      145336438  NM_001002810       PDE4DIP
9    chr1  144694396      145336438  NM_001277444         NBPF9
10   chr1  144694396      145336438  NM_001278267        NBPF20
11   chr1  144694396      145336438  NM_001302371        NBPF10
12   chr1  144694396      145336438     NM_004892        SEC22B
14   chr1  144694396      145336438     NM_203458      NOTCH2NL
15   chr1  144694396      145336438     NR_102405         NBPF8
16   chr1  144694396      145336438     NR_104217       NBPF25P
17  chr10   67904182       68117834  NM_001127384        CTNNA3
19  chr14   21725530       21859330  NM_001170629          CHD8
20  chr14   21725530       21859330     NM_007192       SUPT16H
21  chr14   21725530       21859330     NM_020366       RPGRIP1
23  chr14   21725530       21859330     NM_031314        HNRNPC
24  chr15   30296223       30545834  NM_001282472       GOLGA8J
25  chr15   30296223       30545834     NR_026771  DKFZP434L187
26  chr15   30296223       30545834     NR_026859        ULK4P3
27  chr15   30296223       30545834     NR_033933       GOLGA8T
28   chr6  145864631      145983375     NM_005670         EPM2A
29   chr7  143046904      143164911     NM_000083         CLCN1
30   chr7  143046904      143164911  NM_001278297       FAM131B
31   chr7  143046904      143164911  NM_001322263  LOC100507507
32   chr7  143046904      143164911     NM_003461           ZYX
33   chr7  143046904      143164911     NM_005232         EPHA1
35   chr7  143046904      143164911     NM_177437       TAS2R60
36   chr7  143046904      143164911     NR_033897     EPHA1-AS1
37   chr7  143046904      143164911     NR_106952       MIR6892,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48319339       48641195  NM_001004702         OR4C3
1   chr11   48319339       48641195  NM_001004725         OR4S1
2   chr11   48319339       48641195  NM_001005512        OR4A47
3   chr11   48319339       48641195  NM_001005513        OR4C45
4   chr14   21851704       22317640  NM_001001912         OR4E2
5   chr14   21851704       22317640  NM_001005465        OR10G3
6   chr14   21851704       22317640  NM_001005466        OR10G2
7   chr14   21851704       22317640  NM_001163380         RAB2B
8   chr14   21851704       22317640  NM_001170629          CHD8
9   chr14   21851704       22317640  NM_001303523          TOX4
10  chr14   21851704       22317640  NM_001317107         OR4E1
11  chr14   21851704       22317640     NM_007192       SUPT16H
12  chr14   21851704       22317640     NM_019852        METTL3
15  chr14   21851704       22317640     NR_002916        SNORD8
16  chr14   21851704       22317640     NR_003029        SNORD9
17  chr14   21851704       22317640     NR_111966         SALL2
19  chr17   48029360       48133976     NM_001934          DLX4
20  chr17   48029360       48133976     NM_002204         ITGA3
21  chr17   48029360       48133976     NM_005220          DLX3
23  chr17   48029360       48133976     NR_038230     LOC284080
24   chr2   97179368       97291723  NM_001115016        KANSL3
25   chr2   97179368       97291723  NM_001319085        ARID5A
28   chr2   97179368       97291723     NR_135564  LOC105373496
29   chr3  162940187      163091966     NR_033945     LINC01192
30   chr7   53260818       53822120     NR_038371     LINC01446
31   chr9   41437377       41550125  NM_001113541     SPATA31A5
32   chr9   41437377       41550125     NM_015667     SPATA31A7
33   chr9   41437377       41550125     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143663417      143807977  NM_001123068       PPIAL4G
1    chr1  143663417      143807977     NR_104014     LINC01138
2    chr1  143663417      143807977     NR_106967       MIR6077
3    chr1  143663417      143807977     NR_111930  LOC100132057
4    chr1  244965543      246217375  NM_001143943        EFCAB2
5    chr1  244965543      246217375  NM_001167740         SMYD3
7    chr1  244965543      246217375  NM_001312871         COX20
9    chr1  244965543      246217375     NM_004501        HNRNPU
10   chr1  244965543      246217375     NM_018012        KIF26B
14   chr1  244965543      246217375     NR_111907  LOC101928068
15   chr1  244965543      246217375     NR_132782      SNORA100
16  chr15   28271480       29494345     NM_000275          OCA2
17  chr15   28271480       29494345  NM_001130414         APBA2
18  chr15   28271480       29494345  NM_001282468       GOLGA8M
20  chr15   28271480       29494345     NM_004667         HERC2
21  chr15   28271480       29494345     NM_015307      FAM189A1
22  chr15   28271480       29494345     NR_026589       WHAMMP2
23  chr15   28271480       29494345     NR_033351       GOLGA8F
25  chr15   28271480       29494345     NR_033353       GOLGA8G
27  chr15   28271480       29494345     NR_036443       HERC2P9
28  chr15   28271480       29494345     NR_036475  LOC100289656
29  chr15   28271480       29494345     NR_037599     PDCD6IPP2
30  chr15   28271480       29494345     NR_039734     MIR4509-3
32  chr15   28271480       29494345     NR_047567     GOLGA6L7P
33  chr17   21304403       21607144  NM_001113434      C17orf51
34  chr17   21304403       21607144  NM_001194958        KCNJ18
35  chr17   21304403       21607144     NM_021012        KCNJ12
36  chr21   23132328       23275737     NR_109958     LINC01425
37   chr3   60274801       60465968  NM_001320899          FHIT
38   chr7  110586474      110702313  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   19912041       20016989  NM_001145442         POTEM
1   chr14   19912041       20016989     NR_110505  LOC100508046
2   chr14   19912041       20016989     NR_110526       DUXAP10
3   chr14   19912041       20016989     NR_122111     LINC01296
5   chr14   21697079       22431041  NM_001001912         OR4E2
6   chr14   21697079       22431041  NM_001005465        OR10G3
7   chr14   21697079       22431041  NM_001005466        OR10G2
8   chr14   21697079       22431041  NM_001163380         RAB2B
9   chr14   21697079       22431041  NM_001170629          CHD8
10  chr14   21697079       22431041  NM_001303523          TOX4
11  chr14   21697079       22431041  NM_001317107         OR4E1
12  chr14   21697079       22431041     NM_007192       SUPT16H
13  chr14   21697079       22431041     NM_019852        METTL3
14  chr14   21697079       22431041     NM_020366       RPGRIP1
16  chr14   21697079       22431041     NM_031314        HNRNPC
18  chr14   21697079       22431041     NR_002916        SNORD8
19  chr14   21697079       22431041     NR_003029        SNORD9
20  chr14   21697079       22431041     NR_111966         SALL2
22  chr14   21917877       22387554  NM_001001912         OR4E2
23  chr14   21917877       22387554  NM_001005465        OR10G3
24  chr14   21917877       22387554  NM_001005466        OR10G2
25  chr14   21917877       22387554  NM_001163380         RAB2B
26  chr14   21917877       22387554  NM_001303523          TOX4
27  chr14   21917877       22387554  NM_001317107         OR4E1
28  chr14   21917877       22387554     NM_019852        METTL3
30  chr14   21917877       22387554     NR_111966         SALL2
32   chr2  133771721      133903727     NM_207363        NCKAP5
33   chr7    6710387        6833613  NM_001099697      RSPH10B2
34   chr7    6710387        6833613     NM_006956         ZNF12
35   chr7    6710387        6833613     NR_002217        PMS2CL
36   chr7  123479589      123613325  NM_001174044         SPAM1
39   chr7  123479589      123613325     NM_012269         HYAL4,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21817897       21922581  NM_001170629          CHD8
1   chr14   21817897       21922581     NM_007192       SUPT16H
2   chr14   21817897       21922581     NM_020366       RPGRIP1
4   chr14   21817897       21922581     NR_002916        SNORD8
5   chr14   21817897       21922581     NR_003029        SNORD9
6   chr20   14798133       15022232     NM_080676       MACROD2
7   chr20   14798133       15022232     NR_037841   MACROD2-AS1
9    chr3  118034254      118271703     NR_135547  LOC105374060
10   chr7  110672184      110808817  NM_001099658         LRRN3
11   chr7  110672184      110808817  NM_001244606        IMMP2L
13   chr9    9463750        9609857     NM_002839         PTPRD
14   chr9   41843300       41977036     NR_003670        FGF7P3
15   chr9   41843300       41977036     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143721428      144531709  NM_001123068       PPIAL4G
1    chr1  143721428      144531709  NM_001135789       PPIAL4C
2    chr1  143721428      144531709  NM_001278267        NBPF20
3    chr1  143721428      144531709  NM_001287385        FAM72C
4    chr1  143721428      144531709  NM_001345942        FAM72D
8    chr1  143721428      144531709     NR_024511     LINC00623
10   chr1  143721428      144531709     NR_104014     LINC01138
11   chr1  143721428      144531709     NR_111953     LINC00869
13  chr11  131404680      131565792  NM_001048209           NTM
14  chr11  131404680      131565792     NR_110140  LOC101929653
15  chr11  131404680      131565792     NR_126159       NTM-AS1
16  chr17   56115398       56558261     NM_000250           MPO
17  chr17   56115398       56558261     NM_000502           EPX
18  chr17   56115398       56558261  NM_001004707         OR4D2
19  chr17   56115398       56558261  NM_001080439          HSF5
20  chr17   56115398       56558261  NM_001165927          MKS1
21  chr17   56115398       56558261  NM_001305544         RNF43
24  chr17   56115398       56558261     NM_003168       SUPT4H1
25  chr17   56115398       56558261     NM_004758       TSPOAP1
26  chr17   56115398       56558261     NM_012374         OR4D1
27  chr17   56115398       56558261     NM_080677        DYNLL2
28  chr17   56115398       56558261     NR_002307        MSX2P1
29  chr17   56115398       56558261     NR_027647           LPO
30  chr17   56115398       56558261     NR_029683        MIR142
31  chr17   56115398       56558261     NR_038410   TSPOAP1-AS1
35  chr17   56115398       56558261     NR_039889       MIR4736
36  chr17   56115398       56558261     NR_110809  LOC101927666
37  chr19   21852817       22142851  NM_001256650         ZNF43
38  chr19   21852817       22142851  NM_001329971        ZNF208
40  chr19   21852817       22142851     NM_173531        ZNF100
41  chr19   21852817       22142851     NR_024523     LOC641367
42   chr7  110712117      110821200  NM_001099658         LRRN3
43   chr7  110712117      110821200  NM_001244606        IMMP2L,   chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr4   16174340       16297682     NM_153365      TAPT1
1  chr4   16174340       16297682     NR_027696  TAPT1-AS1
2  chr5  119900550      120011920  NM_001300783      PRR16,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21756063       21957928  NM_001163380        RAB2B
1   chr14   21756063       21957928  NM_001170629         CHD8
2   chr14   21756063       21957928  NM_001303523         TOX4
3   chr14   21756063       21957928     NM_007192      SUPT16H
4   chr14   21756063       21957928     NM_020366      RPGRIP1
7   chr14   21756063       21957928     NR_002916       SNORD8
8   chr14   21756063       21957928     NR_003029       SNORD9
9   chr20   40583455       40946781     NM_133170        PTPRT
10   chr9   11927067       13313529     NM_000550        TYRP1
11   chr9   11927067       13313529  NM_001261407         MPDZ
13   chr9   11927067       13313529     NM_203403      LURAP1L
14   chr9   11927067       13313529     NR_125775  LURAP1L-AS1
15   chr9   11927067       13313529     NR_132976     SNORD137,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21934718       22600918  NM_001001912     OR4E2
1   chr14   21934718       22600918  NM_001005465    OR10G3
2   chr14   21934718       22600918  NM_001005466    OR10G2
3   chr14   21934718       22600918  NM_001163380     RAB2B
4   chr14   21934718       22600918  NM_001303523      TOX4
5   chr14   21934718       22600918  NM_001317107     OR4E1
6   chr14   21934718       22600918     NM_019852    METTL3
8   chr14   21934718       22600918     NR_111966     SALL2
10  chr15   85749950       86152296  NM_001310153  GOLGA6L3
11  chr15   85749950       86152296     NM_006738    AKAP13
12  chr15   85749950       86152296     NR_106993   MIR7706,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   56487805       56656142  NM_001142770        PCDH15
3   chr10   67608402       67825166  NM_001127384        CTNNA3
5   chr14   21707748       21912754  NM_001170629          CHD8
6   chr14   21707748       21912754     NM_007192       SUPT16H
7   chr14   21707748       21912754     NM_020366       RPGRIP1
9   chr14   21707748       21912754     NM_031314        HNRNPC
10  chr14   21707748       21912754     NR_002916        SNORD8
11  chr14   21707748       21912754     NR_003029        SNORD9
12  chr15   28519205       28643190     NM_004667         HERC2
13  chr15   28519205       28643190     NR_033351       GOLGA8F
14  chr15   28519205       28643190     NR_033353       GOLGA8G
15  chr18   40199703       40309331     NR_046174     LINC00907
16   chr4  121605025      121863555     NM_018699         PRDM5
17   chr5  117370165      117514167     NR_104997  LOC102467224
18   chr7   75821020       75948686  NM_001110199         SRRM3
19   chr7   75821020       75948686     NM_001540         HSPB1
20   chr7   93274331       93516731     NM_006528         TFPI2
21   chr7   93274331       93516731     NR_039796       MIR4652,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   86022495       86297403     NR_046989     LINC00351
1   chr16   16434635       16590068  NM_001282511        NPIPA8
2   chr16   16434635       16590068     NR_036447        PKD1P1
3   chr16   16434635       16590068     NR_106971     MIR6511A4
4   chr17     112266         349010  NM_001013672      C17orf97
5   chr17     112266         349010  NM_001190411        RPH3AL
6   chr17     112266         349010     NM_182705         RFLNB
7   chr17     112266         349010     NR_040011  LOC100506388
8   chr17     112266         349010     NR_136407  LOC105371430
9    chr7  110689462      110792397  NM_001099658         LRRN3
10   chr7  110689462      110792397  NM_001244606        IMMP2L
12   chr9    4344733        4571954     NM_004170        SLC1A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18249572       18661314  NM_001004060         NOMO2
1   chr16   18249572       18661314  NM_001282511        NPIPA8
2   chr16   18249572       18661314     NR_003569       ABCC6P1
3   chr16   18249572       18661314     NR_036140     MIR3179-1
4   chr16   18249572       18661314     NR_036142     MIR3180-2
5   chr16   18249572       18661314     NR_036144     MIR3180-3
6   chr16   18249572       18661314     NR_037442     MIR3670-1
7   chr16   18249572       18661314     NR_103772  LOC100288162
8   chr16   18249572       18661314     NR_106971     MIR6511A4
9   chr16   18249572       18661314     NR_107060     MIR6770-2
10   chr4  130541089      131319010     NR_110753  LOC101927282
11   chr9   41877769       42405792  NM_001012419     ANKRD20A3
12   chr9   41877769       42405792  NM_001012421     ANKRD20A2
13   chr9   41877769       42405792     NR_003670        FGF7P3
14   chr9   41877769       42405792     NR_015363         GLIDR
17   chr9   41877769       42405792     NR_126048  LOC102724238
18   chr9   41877769       42405792     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143715902      144944244  NM_001002811       PDE4DIP
2    chr1  143715902      144944244  NM_001123068       PPIAL4G
3    chr1  143715902      144944244  NM_001135789       PPIAL4C
6    chr1  143715902      144944244  NM_001277444         NBPF9
7    chr1  143715902      144944244  NM_001278267        NBPF20
8    chr1  143715902      144944244  NM_001287385        FAM72C
9    chr1  143715902      144944244  NM_001345942        FAM72D
13   chr1  143715902      144944244     NR_003242        PFN1P2
14   chr1  143715902      144944244     NR_024511     LINC00623
16   chr1  143715902      144944244     NR_102405         NBPF8
17   chr1  143715902      144944244     NR_104014     LINC01138
18   chr1  143715902      144944244     NR_111930  LOC100132057
19   chr1  143715902      144944244     NR_111953     LINC00869
21  chr10   81449609       81591244  NM_001278495        NUTM2B
22  chr10   81449609       81591244     NR_029407     LOC642361
23  chr10   81449609       81591244     NR_120611    NUTM2B-AS1
26  chr16   16452394       16558934  NM_001282511        NPIPA8
27  chr16   16452394       16558934     NR_106971     MIR6511A4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  244991129      245120312  NM_001312871      COX20
2    chr1  244991129      245120312     NM_004501     HNRNPU
4    chr1  244991129      245120312     NR_132782   SNORA100
5   chr13   67192363       67502104     NM_020403      PCDH9
6   chr13   67192363       67502104     NR_046527  PCDH9-AS2
7   chr13   93072240       93219011     NM_004466       GPC5
8   chr13   93072240       93219011     NR_049840   MIR548AS
9   chr14   21589186       22032049  NM_001004731     OR5AU1
10  chr14   21589186       22032049  NM_001163380      RAB2B
11  chr14   21589186       22032049  NM_001170629       CHD8
12  chr14   21589186       22032049  NM_001303523       TOX4
13  chr14   21589186       22032049     NM_007192    SUPT16H
14  chr14   21589186       22032049     NM_019852     METTL3
15  chr14   21589186       22032049     NM_020366    RPGRIP1
17  chr14   21589186       22032049     NM_031314     HNRNPC
19  chr14   21589186       22032049     NR_002916     SNORD8
20  chr14   21589186       22032049     NR_003029     SNORD9
21  chr14   21589186       22032049     NR_038970  LINC00641
23  chr14   21589186       22032049     NR_111966      SALL2
25   chr4   94163626       94264670     NM_001510      GRID2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   19679241       19787507     NM_006001        TUBA3C
1   chr13   19679241       19787507     NR_126054  LOC101928697
2   chr14   21789023       22077742  NM_001005465        OR10G3
3   chr14   21789023       22077742  NM_001163380         RAB2B
4   chr14   21789023       22077742  NM_001170629          CHD8
5   chr14   21789023       22077742  NM_001303523          TOX4
6   chr14   21789023       22077742     NM_007192       SUPT16H
7   chr14   21789023       22077742     NM_019852        METTL3
8   chr14   21789023       22077742     NM_020366       RPGRIP1
11  chr14   21789023       22077742     NR_002916        SNORD8
12  chr14   21789023       22077742     NR_003029        SNORD9
13  chr14   21789023       22077742     NR_111966         SALL2
15   chr2   36335106       36742983     NM_016441         CRIM1
16   chr2   36335106       36742983     NR_037631  LOC100288911
17   chr4   93221903       93357221     NM_001510         GRID2,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  112403023      112807815  NM_001270945  LOC643355
1    chr1  112403023      112807815     NM_172198      KCND3
2    chr1  112403023      112807815     NR_046619  KCND3-AS1
3   chr14   21835152       21962742  NM_001163380      RAB2B
4   chr14   21835152       21962742  NM_001170629       CHD8
5   chr14   21835152       21962742  NM_001303523       TOX4
6   chr14   21835152       21962742     NM_007192    SUPT16H
9   chr14   21835152       21962742     NR_002916     SNORD8
10  chr14   21835152       21962742     NR_003029     SNORD9
11  chr21   30175550       30537703  NM_001286619   MAP3K7CL
15  chr21   30175550       30537703  NM_001320724     RWDD2B
16  chr21   30175550       30537703  NM_001320766       LTN1
17  chr21   30175550       30537703     NM_006447      USP16
18  chr21   30175550       30537703     NM_006585       CCT8
19  chr21   30175550       30537703     NM_013240     N6AMT1
24   chr7  110722889      110903031  NM_001099658      LRRN3
25   chr7  110722889      110903031  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr12   27149974       27310344  NM_001080406   C12orf71
1   chr12   27149974       27310344  NM_001271811      MED21
2   chr12   27149974       27310344     NM_016551     TM7SF3
3   chr14   38188522       38289980  NM_001310135       TTC6
4   chr16   29479822       29690469  NM_001030288        SPN
5   chr16   29479822       29690469  NM_001318249       QPRT
7   chr16   29479822       29690469     NR_049833  MIR3680-2
8   chr16   29479822       29690469     NR_135305     SMG1P2
10   chr2   35687462       35983784     NR_039629   MIR548AD
11  chr21   22621186       22750244     NM_004540      NCAM2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  233670420      233932861     NM_002245         KCNK1
1    chr1  233670420      233932861     NR_039625       MIR4427
2   chr16   16391893       16669287  NM_001282511        NPIPA8
3   chr16   16391893       16669287     NR_036140     MIR3179-1
4   chr16   16391893       16669287     NR_036141     MIR3180-1
5   chr16   16391893       16669287     NR_036142     MIR3180-2
6   chr16   16391893       16669287     NR_036447        PKD1P1
7   chr16   16391893       16669287     NR_103772  LOC100288162
8   chr16   16391893       16669287     NR_106766     MIR6511A1
9   chr16   16391893       16669287     NR_106971     MIR6511A4
10  chr16   16391893       16669287     NR_107060     MIR6770-2
11  chr16   16391893       16669287     NR_128713     MIR3670-4
12   chr4     498939         622165     NM_000283         PDE6B
13   chr4     498939         622165  NM_001289053          PIGG
16   chr8   86615087       86804939     NR_003594      REXO1L2P,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr1  187181749      187877204     NR_126347  LINC01036
1   chr1  187181749      187877204     NR_132374  LINC01037
2  chr14   45661092       45781486  NM_001308133      FANCM
3  chr14   45661092       45781486     NM_018353   MIS18BP1
4  chr22   17268863       17530022  NM_001037814       GAB4
5  chr22   17268863       17530022     NM_175878       XKR3
6  chr22   17268863       17530022     NR_003607    HSFY1P1
7  chr22   17268863       17530022     NR_015352      CECR7
8   chr7   11810801       11930030     NM_015204     THSD7A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21834987       21948617  NM_001163380         RAB2B
1   chr14   21834987       21948617  NM_001170629          CHD8
2   chr14   21834987       21948617  NM_001303523          TOX4
3   chr14   21834987       21948617     NM_007192       SUPT16H
6   chr14   21834987       21948617     NR_002916        SNORD8
7   chr14   21834987       21948617     NR_003029        SNORD9
8    chr2   26585841       26710564     NM_004802          OTOF
9    chr2   26585841       26710564     NM_033505       SELENOI
10   chr2   26585841       26710564     NM_145038          DRC1
12   chr2  181882532      182008986  NM_001278554        UBE2E3
15   chr2  181882532      182008986     NR_130784  LOC101927156
16   chr5   17730556       17836249     NR_134286     LOC646241
18   chr9   67158130       67472241     NR_002817        AQP7P1
19   chr9   67158130       67472241     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   86682380       86798354  NM_001168724       TMEM135
1   chr11   86682380       86798354     NR_038905  LOC100506368
2   chr14   21829103       22128223  NM_001005465        OR10G3
3   chr14   21829103       22128223  NM_001005466        OR10G2
4   chr14   21829103       22128223  NM_001163380         RAB2B
5   chr14   21829103       22128223  NM_001170629          CHD8
6   chr14   21829103       22128223  NM_001303523          TOX4
7   chr14   21829103       22128223     NM_007192       SUPT16H
8   chr14   21829103       22128223     NM_019852        METTL3
11  chr14   21829103       22128223     NR_002916        SNORD8
12  chr14   21829103       22128223     NR_003029        SNORD9
13  chr14   21829103       22128223     NR_111966         SALL2
15  chr16   21468868       22202830  NM_001077180        METTL9
16  chr16   21468868       22202830  NM_001161683          OTOA
17  chr16   21468868       22202830  NM_001164579      C16orf52
19  chr16   21468868       22202830  NM_001310148        NPIPB4
20  chr16   21468868       22202830     NM_003366        UQCRC2
21  chr16   21468868       22202830     NM_005849         IGSF6
24  chr16   21468868       22202830     NM_173615         VWA3A
25  chr16   21468868       22202830     NM_173806         PDZD9
26  chr16   21468868       22202830     NR_002594      SLC7A5P2
27  chr16   21468868       22202830     NR_003370        RRN3P1
28  chr16   21468868       22202830     NR_027155        SMG1P3
29  chr16   21468868       22202830     NR_049833     MIR3680-2
30  chr16   21468868       22202830     NR_110930  LOC101927814
31   chr4  190426823      190658874     NR_121679     LINC01262
32   chr4  190426823      190658874     NR_135513  LOC105379514
33   chr9   28725307       29011710  NM_001258282        LINGO2
34   chr9   28725307       29011710     NR_030597        MIR876
35   chr9   28725307       29011710     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   63350238       63479897     NR_047029     LINC00448
3   chr14   21793172       23240948  NM_001001912         OR4E2
4   chr14   21793172       23240948  NM_001005465        OR10G3
5   chr14   21793172       23240948  NM_001005466        OR10G2
6   chr14   21793172       23240948  NM_001163380         RAB2B
7   chr14   21793172       23240948  NM_001170629          CHD8
8   chr14   21793172       23240948  NM_001303523          TOX4
9   chr14   21793172       23240948  NM_001317107         OR4E1
10  chr14   21793172       23240948     NM_001344          DAD1
11  chr14   21793172       23240948     NM_005015         OXA1L
12  chr14   21793172       23240948     NM_007192       SUPT16H
13  chr14   21793172       23240948     NM_019852        METTL3
14  chr14   21793172       23240948     NM_020366       RPGRIP1
16  chr14   21793172       23240948     NM_022060         ABHD4
18  chr14   21793172       23240948     NR_002916        SNORD8
19  chr14   21793172       23240948     NR_003029        SNORD9
20  chr14   21793172       23240948     NR_111966         SALL2
22  chr16   21560107       21683992  NM_001077180        METTL9
24  chr16   21560107       21683992     NM_005849         IGSF6
25  chr16   21560107       21683992     NR_110930  LOC101927814
26  chr19   23891288       24011668     NM_138286        ZNF681
27  chr19   23891288       24011668     NR_003662       RPSAP58
28  chr20    5159480        5366836     NM_003818          CDS2
29  chr20    5159480        5366836     NM_144773        PROKR2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr2   49078472       49221881     NM_181446          FSHR
1    chr2  129523548      129729537     NR_110278  LOC101927881
2   chr22   19042564       19755166     NM_000407         GP1BB
3   chr22   19042564       19755166  NM_001009939         SEPT5
4   chr22   19042564       19755166  NM_001035247         UFD1L
5   chr22   19042564       19755166  NM_001166242      C22orf39
6   chr22   19042564       19755166  NM_001178010         CDC45
7   chr22   19042564       19755166  NM_001184781         DGCR2
8   chr22   19042564       19755166  NM_001256534       SLC25A1
9   chr22   19042564       19755166  NM_001318151        MRPL40
11  chr22   19042564       19755166     NM_001835        CLTCL1
13  chr22   19042564       19755166     NM_003277         CLDN5
14  chr22   19042564       19755166     NM_003325          HIRA
16  chr22   19042564       19755166     NM_005315          GSC2
18  chr22   19042564       19755166     NM_005992          TBX1
19  chr22   19042564       19755166     NM_022719        DGCR14
20  chr22   19042564       19755166     NM_053006         TSSK2
24  chr22   19042564       19755166     NR_024381     LINC00895
25  chr22   19042564       19755166     NR_037611   SEPT5-GP1BB
27  chr22   19042564       19755166     NR_103767     LINC01311,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  185981292      186542594  NM_001164245       C1orf27
1    chr1  185981292      186542594  NM_001303232          PRG4
2    chr1  185981292      186542594     NM_002597           PDC
3    chr1  185981292      186542594     NM_003292           TPR
4    chr1  185981292      186542594     NM_022375          OCLM
6    chr1  185981292      186542594     NM_031935         HMCN1
7    chr1  185981292      186542594     NR_126002  LOC102724919
8   chr10   67964865       68109524  NM_001127384        CTNNA3
10  chr14   21760903       21899831  NM_001170629          CHD8
11  chr14   21760903       21899831     NM_007192       SUPT16H
12  chr14   21760903       21899831     NM_020366       RPGRIP1
14  chr14   21760903       21899831     NR_002916        SNORD8
15  chr14   21760903       21899831     NR_003029        SNORD9
16  chr15   28291905       28643686     NM_000275          OCA2
18  chr15   28291905       28643686     NM_004667         HERC2
19  chr15   28291905       28643686     NR_033351       GOLGA8F
20  chr15   28291905       28643686     NR_033353       GOLGA8G
21   chr2  110221497      110383814  NM_001099289        SH3RF3
22   chr2  110221497      110383814  NM_001321504        SEPT10
24   chr2  110221497      110383814     NM_023016        SOWAHC
25   chr4  169229627      169363427  NM_001012967        DDX60L
27   chr4  169229627      169363427     NM_017631         DDX60,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21655077       21861066  NM_001170629          CHD8
1   chr14   21655077       21861066     NM_007192       SUPT16H
2   chr14   21655077       21861066     NM_020366       RPGRIP1
4   chr14   21655077       21861066     NM_031314        HNRNPC
5   chr14   21655077       21861066     NR_003029        SNORD9
6   chr14   21655077       21861066     NR_038970     LINC00641
8    chr2   52850447       53017810     NR_039630       MIR4431
9    chr7   64029993       64199078  NM_001282360        ZNF107
10   chr7   64029993       64199078     NR_033245     LOC641746
11   chr7   64029993       64199078     NR_077227  LOC100128885
13   chr7   64029993       64199078     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21837813       22053946  NM_001005465        OR10G3
1   chr14   21837813       22053946  NM_001163380         RAB2B
2   chr14   21837813       22053946  NM_001170629          CHD8
3   chr14   21837813       22053946  NM_001303523          TOX4
4   chr14   21837813       22053946     NM_007192       SUPT16H
5   chr14   21837813       22053946     NM_019852        METTL3
8   chr14   21837813       22053946     NR_002916        SNORD8
9   chr14   21837813       22053946     NR_003029        SNORD9
10  chr14   21837813       22053946     NR_111966         SALL2
12  chr15   30263317       30648306  NM_001282472       GOLGA8J
13  chr15   30263317       30648306     NR_026771  DKFZP434L187
14  chr15   30263317       30648306     NR_026859        ULK4P3
15  chr15   30263317       30648306     NR_033933       GOLGA8T
16  chr20   14726110       15396736  NM_001033087       MACROD2
18  chr20   14726110       15396736     NR_037841   MACROD2-AS1
20   chr7  123463506      123594211  NM_001174044         SPAM1
23   chr7  123463506      123594211     NM_012269         HYAL4,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21637372       22032820  NM_001163380      RAB2B
1   chr14   21637372       22032820  NM_001170629       CHD8
2   chr14   21637372       22032820  NM_001303523       TOX4
3   chr14   21637372       22032820     NM_007192    SUPT16H
4   chr14   21637372       22032820     NM_019852     METTL3
5   chr14   21637372       22032820     NM_020366    RPGRIP1
7   chr14   21637372       22032820     NM_031314     HNRNPC
9   chr14   21637372       22032820     NR_002916     SNORD8
10  chr14   21637372       22032820     NR_003029     SNORD9
11  chr14   21637372       22032820     NR_038970  LINC00641
13  chr14   21637372       22032820     NR_111966      SALL2
15  chr16   79026300       79182894     NM_016373       WWOX,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr15   77632019       77737389  NM_001304505     HMG20A
1   chr15   77632019       77737389     NM_024776      PEAK1
2   chr16   21770819       21921540  NM_001161683       OTOA
3   chr16   21770819       21921540  NM_001310148     NPIPB4
6   chr16   21770819       21921540     NR_003370     RRN3P1
7    chr2   52214140       52510871     NR_135237  LOC730100
8   chr22   19016287       19366757  NM_001184781      DGCR2
9   chr22   19016287       19366757  NM_001256534    SLC25A1
10  chr22   19016287       19366757     NM_001835     CLTCL1
11  chr22   19016287       19366757     NM_003325       HIRA
12  chr22   19016287       19366757     NM_005315       GSC2
14  chr22   19016287       19366757     NM_022719     DGCR14
15  chr22   19016287       19366757     NM_053006      TSSK2
16  chr22   19016287       19366757     NR_024157     DGCR11
17  chr22   19016287       19366757     NR_103767  LINC01311
18  chr22   19016287       19366757     NR_110533      DGCR5
19   chr3  160081656      160303796  NM_001190241      IFT80
21   chr3  160081656      160303796  NM_001288753       SMC4
22   chr3  160081656      160303796     NM_002268      KPNA4
24   chr3  160081656      160303796     NM_173084     TRIM59
25   chr3  160081656      160303796     NR_003001    SCARNA7
26   chr3  160081656      160303796     NR_029525    MIR16-2
27   chr3  160081656      160303796     NR_029663     MIR15B
28   chr7  110564476      110667698  NM_001244606     IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr12   10617200       11084691  NM_001110213          PRH2
1   chr12   10617200       11084691  NM_001291315          PRH1
2   chr12   10617200       11084691  NM_001300739        MAGOHB
3   chr12   10617200       11084691     NM_003651          YBX3
4   chr12   10617200       11084691     NM_007244          PRR4
6   chr12   10617200       11084691     NM_018423         STYK1
7   chr12   10617200       11084691     NM_023917        TAS2R9
8   chr12   10617200       11084691     NM_023918        TAS2R8
9   chr12   10617200       11084691     NM_023919        TAS2R7
10  chr12   10617200       11084691     NM_023920       TAS2R13
11  chr12   10617200       11084691     NM_023921       TAS2R10
12  chr12   10617200       11084691     NR_028045        KLRA1P
13  chr12   10617200       11084691     NR_037918     PRH1-PRR4
14  chr12   10617200       11084691     NR_120463  LOC101928162
15  chr14   21856047       22353084  NM_001001912         OR4E2
16  chr14   21856047       22353084  NM_001005465        OR10G3
17  chr14   21856047       22353084  NM_001005466        OR10G2
18  chr14   21856047       22353084  NM_001163380         RAB2B
19  chr14   21856047       22353084  NM_001170629          CHD8
20  chr14   21856047       22353084  NM_001303523          TOX4
21  chr14   21856047       22353084  NM_001317107         OR4E1
22  chr14   21856047       22353084     NM_019852        METTL3
25  chr14   21856047       22353084     NR_002916        SNORD8
26  chr14   21856047       22353084     NR_003029        SNORD9
27  chr14   21856047       22353084     NR_111966         SALL2
29   chr3   25995546       27387894  NM_001304384         NEK10
30   chr3   25995546       27387894  NM_001317808        LRRC3B,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1  144783570      144922948  NM_001002811   PDE4DIP
4    chr1  144783570      144922948  NM_001277444     NBPF9
5    chr1  144783570      144922948  NM_001278267    NBPF20
6    chr1  144783570      144922948     NR_102405     NBPF8
7   chr14   21855394       22049289  NM_001005465    OR10G3
8   chr14   21855394       22049289  NM_001163380     RAB2B
9   chr14   21855394       22049289  NM_001170629      CHD8
10  chr14   21855394       22049289  NM_001303523      TOX4
11  chr14   21855394       22049289     NM_019852    METTL3
14  chr14   21855394       22049289     NR_002916    SNORD8
15  chr14   21855394       22049289     NR_003029    SNORD9
16  chr14   21855394       22049289     NR_111966     SALL2
18  chr16   21802006       21924933  NM_001310148    NPIPB4
19  chr16   21802006       21924933     NR_003370    RRN3P1
20   chr2   56599820       56716187  NM_001080433   CCDC85A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   84018975       84128661  NM_001142699          DLG2
3   chr15   28635851       29302051  NM_001130414         APBA2
4   chr15   28635851       29302051  NM_001282468       GOLGA8M
5   chr15   28635851       29302051     NR_026589       WHAMMP2
6   chr15   28635851       29302051     NR_033351       GOLGA8F
8   chr15   28635851       29302051     NR_033353       GOLGA8G
10  chr15   28635851       29302051     NR_036443       HERC2P9
11  chr15   28635851       29302051     NR_036475  LOC100289656
12  chr15   28635851       29302051     NR_037599     PDCD6IPP2
13  chr15   28635851       29302051     NR_039734     MIR4509-3
15  chr15   28635851       29302051     NR_047567     GOLGA6L7P
16  chr16   21852974       21976343  NM_001310148        NPIPB4
17  chr16   21852974       21976343     NM_003366        UQCRC2
18   chr2   50981994       51118022  NM_001330082         NRXN1
19   chr7   21214713       23333842  NM_001164460       STEAP1B
20   chr7   21214713       23333842  NM_001172428         KLHL7
21   chr7   21214713       23333842  NM_001277115        DNAH11
22   chr7   21214713       23333842  NM_001318095           IL6
23   chr7   21214713       23333842  NM_001326542           SP4
24   chr7   21214713       23333842     NM_002510         GPNMB
25   chr7   21214713       23333842     NM_007342         NUPL2
26   chr7   21214713       23333842     NM_012294       RAPGEF5
27   chr7   21214713       23333842     NM_018719        CDCA7L
29   chr7   21214713       23333842     NM_019059         TOMM7
30   chr7   21214713       23333842     NM_032581       FAM126A
32   chr7   21214713       23333842     NR_003075       SNORD93
33   chr7   21214713       23333842     NR_031594       MIR1183
35   chr7   21214713       23333842     NR_038393  LOC100506178
36   chr7   21214713       23333842     NR_046220     KLHL7-AS1
37   chr7   21214713       23333842     NR_122075     LOC401312
38   chr7   21214713       23333842     NR_131935     LOC541472
40   chr9   41887564       41996728     NR_003670        FGF7P3
41   chr9   41887564       41996728     NR_015363         GLIDR,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   40734614       40843517  NM_001258419        LRRC4C
1   chr14   21808836       22118684  NM_001005465        OR10G3
2   chr14   21808836       22118684  NM_001005466        OR10G2
3   chr14   21808836       22118684  NM_001163380         RAB2B
4   chr14   21808836       22118684  NM_001170629          CHD8
5   chr14   21808836       22118684  NM_001303523          TOX4
6   chr14   21808836       22118684     NM_007192       SUPT16H
7   chr14   21808836       22118684     NM_019852        METTL3
8   chr14   21808836       22118684     NM_020366       RPGRIP1
11  chr14   21808836       22118684     NR_002916        SNORD8
12  chr14   21808836       22118684     NR_003029        SNORD9
13  chr14   21808836       22118684     NR_111966         SALL2
15  chr16   18394933       18536369  NM_001004060         NOMO2
16  chr16   18394933       18536369  NM_001282511        NPIPA8
17  chr16   18394933       18536369     NR_036140     MIR3179-1
18  chr16   18394933       18536369     NR_036142     MIR3180-2
19  chr16   18394933       18536369     NR_036144     MIR3180-3
20  chr16   18394933       18536369     NR_037442     MIR3670-1
21  chr16   18394933       18536369     NR_103772  LOC100288162
22  chr16   18394933       18536369     NR_106971     MIR6511A4
23  chr16   18394933       18536369     NR_107060     MIR6770-2
24  chr16   83100043       83504835  NM_001220488         CDH13
26   chr2  110179333      110518979  NM_001099289        SH3RF3
27   chr2  110179333      110518979  NM_001321504        SEPT10
29   chr2  110179333      110518979     NM_023016        SOWAHC
30   chr9   16803872       16997537     NM_017637          BNC2
31   chr9   28592594       29188273  NM_001258282        LINGO2
33   chr9   28592594       29188273     NR_030597        MIR876
34   chr9   28592594       29188273     NR_030618        MIR873
35   chr9   30400820       31091433     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   27563727       27671004     NR_138082       ARMC4P1
1   chr15   30287181       30554172  NM_001282472       GOLGA8J
2   chr15   30287181       30554172     NR_026771  DKFZP434L187
3   chr15   30287181       30554172     NR_026859        ULK4P3
4   chr15   30287181       30554172     NR_033933       GOLGA8T
5   chr16   18435788       18591259  NM_001004060         NOMO2
6   chr16   18435788       18591259     NR_003569       ABCC6P1
7   chr16   18435788       18591259     NR_036140     MIR3179-1
8   chr16   18435788       18591259     NR_036142     MIR3180-2
9   chr16   18435788       18591259     NR_036144     MIR3180-3
10  chr16   18435788       18591259     NR_037442     MIR3670-1
11  chr16   18435788       18591259     NR_103772  LOC100288162
12  chr16   18435788       18591259     NR_106971     MIR6511A4
13  chr16   18435788       18591259     NR_107060     MIR6770-2
14   chr3  118690862      118869196  NM_001015887        IGSF11
16   chr3  118690862      118869196     NM_152539       C3orf30
17   chr4  161716938      162306343  NM_001128428         FSTL5
18   chr9   41918380       42078092     NR_003670        FGF7P3
19   chr9   41918380       42078092     NR_015363         GLIDR
22   chr9   41918380       42078092     NR_126048  LOC102724238
23   chr9   41918380       42078092     NR_126049     LOC554249,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21847012       21976747  NM_001163380      RAB2B
1   chr14   21847012       21976747  NM_001170629       CHD8
2   chr14   21847012       21976747  NM_001303523       TOX4
3   chr14   21847012       21976747     NM_007192    SUPT16H
4   chr14   21847012       21976747     NM_019852     METTL3
7   chr14   21847012       21976747     NR_002916     SNORD8
8   chr14   21847012       21976747     NR_003029     SNORD9
9   chr14   47781234       47918917  NM_001113498      MDGA2
12  chr16   68571579       68744748  NM_001305204      ZFP90
14  chr16   68571579       68744748  NM_001317195       CDH3
15   chr7   77771852       78281935     NM_012301      MAGI2
16   chr7   77771852       78281935     NR_003680  RPL13AP17,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28650700       29109007  NM_001282468       GOLGA8M
1   chr15   28650700       29109007     NR_026589       WHAMMP2
2   chr15   28650700       29109007     NR_033351       GOLGA8F
3   chr15   28650700       29109007     NR_033353       GOLGA8G
4   chr15   28650700       29109007     NR_036443       HERC2P9
5   chr15   28650700       29109007     NR_036475  LOC100289656
6   chr15   28650700       29109007     NR_037599     PDCD6IPP2
7   chr15   28650700       29109007     NR_039734     MIR4509-3
9   chr15   28650700       29109007     NR_047567     GOLGA6L7P
10   chr9   44275483       45703982     NR_027421        FAM27C
11   chr9   44275483       45703982     NR_121564  LOC101927827
12   chr9   44275483       45703982     NR_121606  LOC102723709
13   chr9   44275483       45703982     NR_126050  LOC103908605
14   chr9   44275483       45703982     NR_144466  LOC105379807,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12777850       13958757  NM_001006624       PDPN
1    chr1   12777850       13958757  NM_001009611    PRAMEF4
2    chr1   12777850       13958757  NM_001010847     LRRC38
3    chr1   12777850       13958757  NM_001010889    PRAMEF6
5    chr1   12777850       13958757  NM_001010890    PRAMEF9
6    chr1   12777850       13958757  NM_001012276    PRAMEF8
9    chr1   12777850       13958757  NM_001013407    PRAMEF5
11   chr1   12777850       13958757  NM_001013631   HNRNPCL1
12   chr1   12777850       13958757  NM_001024661   PRAMEF14
14   chr1   12777850       13958757  NM_001039361   PRAMEF10
16   chr1   12777850       13958757  NM_001080830   PRAMEF12
17   chr1   12777850       13958757  NM_001098376   PRAMEF15
19   chr1   12777850       13958757  NM_001099790   PRAMEF19
21   chr1   12777850       13958757  NM_001099850   PRAMEF18
23   chr1   12777850       13958757  NM_001099851   PRAMEF17
25   chr1   12777850       13958757  NM_001099852   PRAMEF20
27   chr1   12777850       13958757  NM_001100631   PRAMEF22
29   chr1   12777850       13958757  NM_001103170    AADACL3
30   chr1   12777850       13958757  NM_001136561   HNRNPCL2
31   chr1   12777850       13958757  NM_001146181   HNRNPCL3
32   chr1   12777850       13958757  NM_001146344   PRAMEF11
33   chr1   12777850       13958757  NM_001291381  PRAMEF33P
35   chr1   12777850       13958757  NM_001294139    PRAMEF1
36   chr1   12777850       13958757  NM_001300891   PRAMEF27
39   chr1   12777850       13958757  NM_001302551   HNRNPCL4
40   chr1   12777850       13958757  NM_001306072   PRAMEF26
41   chr1   12777850       13958757  NM_001310134   PRAMEF25
43   chr1   12777850       13958757     NM_023014    PRAMEF2
44   chr1   12777850       13958757     NM_152290   C1orf158
46   chr1   12777850       13958757     NR_111945  PRAMEF36P
48  chr14   21686462       22204681  NM_001001912      OR4E2
49  chr14   21686462       22204681  NM_001005465     OR10G3
50  chr14   21686462       22204681  NM_001005466     OR10G2
51  chr14   21686462       22204681  NM_001163380      RAB2B
52  chr14   21686462       22204681  NM_001170629       CHD8
53  chr14   21686462       22204681  NM_001303523       TOX4
54  chr14   21686462       22204681  NM_001317107      OR4E1
55  chr14   21686462       22204681     NM_007192    SUPT16H
56  chr14   21686462       22204681     NM_019852     METTL3
57  chr14   21686462       22204681     NM_020366    RPGRIP1
59  chr14   21686462       22204681     NM_031314     HNRNPC
61  chr14   21686462       22204681     NR_002916     SNORD8
62  chr14   21686462       22204681     NR_003029     SNORD9
63  chr14   21686462       22204681     NR_111966      SALL2
65  chr15   30303852       30445288  NM_001282472    GOLGA8J
66  chr15   30303852       30445288     NR_026859     ULK4P3
67  chr15   30303852       30445288     NR_033933    GOLGA8T,      chrom  cnv_start  cnv_terminate       tx_name      gene_name
0     chr1   73268866       73988023     NR_110676      LINC01360
2    chr14   21841440       25368530     NM_000257           MYH7
3    chr14   21841440       25368530     NM_000359           TGM1
4    chr14   21841440       25368530  NM_001001912          OR4E2
5    chr14   21841440       25368530  NM_001002000          GMPR2
7    chr14   21841440       25368530  NM_001005465         OR10G3
8    chr14   21841440       25368530  NM_001005466         OR10G2
9    chr14   21841440       25368530  NM_001014842         TM9SF1
10   chr14   21841440       25368530  NM_001018073           PCK2
11   chr14   21841440       25368530  NM_001039619          PRMT5
12   chr14   21841440       25368530  NM_001039771          CBLN3
13   chr14   21841440       25368530  NM_001042635           NGDN
14   chr14   21841440       25368530  NM_001048205           REC8
15   chr14   21841440       25368530  NM_001099274          TINF2
16   chr14   21841440       25368530  NM_001099780         PSMB11
17   chr14   21841440       25368530  NM_001126105         SLC7A7
19   chr14   21841440       25368530  NM_001130706       C14orf93
20   chr14   21841440       25368530  NM_001130725          PSMB5
21   chr14   21841440       25368530  NM_001136022         NFATC4
22   chr14   21841440       25368530  NM_001136050          DHRS1
23   chr14   21841440       25368530  NM_001143919          LTB4R
25   chr14   21841440       25368530  NM_001146028           JPH4
26   chr14   21841440       25368530  NM_001163380          RAB2B
27   chr14   21841440       25368530  NM_001163484         DCAF11
28   chr14   21841440       25368530  NM_001164692         LTB4R2
29   chr14   21841440       25368530  NM_001164815          ACIN1
31   chr14   21841440       25368530  NM_001170629           CHD8
32   chr14   21841440       25368530  NM_001184739          TSSK4
33   chr14   21841440       25368530  NM_001193635        DHRS4L2
36   chr14   21841440       25368530  NM_001199823     NEDD8-MDP1
..     ...        ...            ...           ...            ...
153  chr15   28792664       29035214  NM_001282468        GOLGA8M
154  chr15   28792664       29035214     NR_026589        WHAMMP2
155  chr15   28792664       29035214     NR_036443        HERC2P9
156  chr15   28792664       29035214     NR_036475   LOC100289656
157  chr15   28792664       29035214     NR_037599      PDCD6IPP2
158   chr2   47038956       50473123     NM_000233          LHCGR
159   chr2   47038956       50473123  NM_001135629        PPP1R21
160   chr2   47038956       50473123  NM_001163561        C2orf61
161   chr2   47038956       50473123  NM_001171506          MCFD2
164   chr2   47038956       50473123  NM_001190274         FBXO11
165   chr2   47038956       50473123  NM_001193487        GTF2A1L
166   chr2   47038956       50473123  NM_001198593  STON1-GTF2A1L
168   chr2   47038956       50473123  NM_001258281           MSH2
169   chr2   47038956       50473123  NM_001281493           MSH6
171   chr2   47038956       50473123  NM_001288951          TTC7A
173   chr2   47038956       50473123  NM_001305624          CALM2
176   chr2   47038956       50473123  NM_001320157          NRXN1
179   chr2   47038956       50473123     NM_002158          FOXN2
180   chr2   47038956       50473123     NM_002354          EPCAM
181   chr2   47038956       50473123     NM_006873          STON1
182   chr2   47038956       50473123     NM_022055         KCNK12
187   chr2   47038956       50473123     NM_181446           FSHR
188   chr2   47038956       50473123     NR_024452      LINC01119
189   chr2   47038956       50473123     NR_030286         MIR559
190   chr2   47038956       50473123     NR_034099      LINC01118
191   chr2   47038956       50473123     NR_107011       MIR548BA
192   chr2   47038956       50473123     NR_110207   LOC101927043
194   chr2   47038956       50473123     NR_120602     HCG2040054
195   chr7  110741798      110869464  NM_001099658          LRRN3
196   chr7  110741798      110869464  NM_001244606         IMMP2L

[137 rows x 5 columns],     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   60300645       60934799  NM_001278320        MS4A13
1   chr11   60300645       60934799  NM_001310141        MS4A18
2   chr11   60300645       60934799  NM_001346456           CD5
3   chr11   60300645       60934799     NM_004778        PTGDR2
4   chr11   60300645       60934799     NM_006725           CD6
6   chr11   60300645       60934799     NM_014502        PRPF19
7   chr11   60300645       60934799     NM_017870      TMEM132A
8   chr11   60300645       60934799     NM_017966        VPS37C
9   chr11   60300645       60934799     NM_024092       TMEM109
10  chr11   60300645       60934799     NM_024098        CCDC86
11  chr11   60300645       60934799     NM_031457         MS4A8
12  chr11   60300645       60934799     NM_152717        MS4A15
13  chr11   60300645       60934799     NM_206893        MS4A10
14  chr11   60300645       60934799     NM_207341           ZP1
15  chr11   60300645       60934799     NR_026946     LINC00301
16  chr11   60300645       60934799     NR_027391       SLC15A3
17  chr16   16371220       16507257  NM_001004067         NOMO3
18  chr16   16371220       16507257  NM_001282511        NPIPA8
19  chr16   16371220       16507257     NR_036140     MIR3179-1
20  chr16   16371220       16507257     NR_036141     MIR3180-1
21  chr16   16371220       16507257     NR_036142     MIR3180-2
22  chr16   16371220       16507257     NR_036447        PKD1P1
23  chr16   16371220       16507257     NR_103772  LOC100288162
24  chr16   16371220       16507257     NR_106766     MIR6511A1
25  chr16   16371220       16507257     NR_106971     MIR6511A4
26  chr16   16371220       16507257     NR_107060     MIR6770-2
27  chr16   16371220       16507257     NR_128713     MIR3670-4
28   chr4   93999577       94372051     NM_001510         GRID2
29   chr5  146389243      146656184  NM_001112724        STK32A
30   chr5  146389243      146656184  NM_001271899       PPP2R2B,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12796279       13410772  NM_001009611       PRAMEF4
1    chr1   12796279       13410772  NM_001010889       PRAMEF6
3    chr1   12796279       13410772  NM_001010890       PRAMEF9
4    chr1   12796279       13410772  NM_001012276       PRAMEF8
6    chr1   12796279       13410772  NM_001013407       PRAMEF5
8    chr1   12796279       13410772  NM_001013631      HNRNPCL1
9    chr1   12796279       13410772  NM_001039361      PRAMEF10
10   chr1   12796279       13410772  NM_001080830      PRAMEF12
11   chr1   12796279       13410772  NM_001099850      PRAMEF18
13   chr1   12796279       13410772  NM_001100631      PRAMEF22
15   chr1   12796279       13410772  NM_001136561      HNRNPCL2
16   chr1   12796279       13410772  NM_001146181      HNRNPCL3
17   chr1   12796279       13410772  NM_001146344      PRAMEF11
18   chr1   12796279       13410772  NM_001291381     PRAMEF33P
19   chr1   12796279       13410772  NM_001294139       PRAMEF1
20   chr1   12796279       13410772  NM_001300891      PRAMEF27
21   chr1   12796279       13410772  NM_001302551      HNRNPCL4
22   chr1   12796279       13410772  NM_001306072      PRAMEF26
23   chr1   12796279       13410772  NM_001310134      PRAMEF25
25   chr1   12796279       13410772     NM_023014       PRAMEF2
26   chr1   12796279       13410772     NM_152290      C1orf158
27   chr1   12796279       13410772     NR_111945     PRAMEF36P
29   chr1  102376143      102482274     NR_110211         OLFM3
30  chr12   72607830       72827604     NM_013381         TRHDE
31  chr12   72607830       72827604     NR_026836     TRHDE-AS1
33  chr14   81632464       81763780  NM_001256430         STON2
34  chr14   81632464       81763780  NM_001278940        GTF2A1
37  chr14   81632464       81763780     NR_003021       SNORA79
38  chr14   81632464       81763780     NR_135252  LOC101928504
39   chr2  195532746      195644262     NR_110223  LOC101927431
40   chr7  143027663      143167310     NM_000083         CLCN1
41   chr7  143027663      143167310  NM_001278297       FAM131B
42   chr7  143027663      143167310  NM_001322263  LOC100507507
43   chr7  143027663      143167310     NM_003461           ZYX
44   chr7  143027663      143167310     NM_005232         EPHA1
46   chr7  143027663      143167310     NM_177437       TAS2R60
47   chr7  143027663      143167310     NR_033897     EPHA1-AS1
48   chr7  143027663      143167310     NR_106952       MIR6892
49   chr8   97738908       97954809     NM_016134           CPQ
50   chr9    4525946        4994084  NM_001039395       SPATA6L
51   chr9    4525946        4994084  NM_001199853           AK3
54   chr9    4525946        4994084  NM_001286699          RCL1
56   chr9    4525946        4994084  NM_001322194          JAK2
58   chr9    4525946        4994084     NM_004170        SLC1A1
61   chr9    4525946        4994084     NM_017913       CDC37L1
62   chr9    4525946        4994084     NM_203453         PLPP6
63   chr9    4525946        4994084     NR_029836      MIR101-2
64   chr9    4525946        4994084     NR_121597   CDC37L1-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18452988       18579783  NM_001004060         NOMO2
1   chr16   18452988       18579783     NR_036140     MIR3179-1
2   chr16   18452988       18579783     NR_036142     MIR3180-2
3   chr16   18452988       18579783     NR_036144     MIR3180-3
4   chr16   18452988       18579783     NR_037442     MIR3670-1
5   chr16   18452988       18579783     NR_107060     MIR6770-2
6   chr16   80799983       80989868     NM_152342         CDYL2
7   chr16   80799983       80989868     NR_131948       PRCAT47
8   chr21   40098818       40444487  NM_001256295          ETS2
10  chr21   40098818       40444487     NR_027065     LINC00114
13  chr21   40098818       40444487     NR_109926  LOC101928398
14  chr21   40098818       40444487     NR_109962  LOC101928435
15  chr21   40098818       40444487     NR_120405     LOC400867
16   chr7   16729182       18259788  NM_001159767          BZW2
17   chr7   16729182       18259788  NM_001204144         HDAC9
19   chr7   16729182       18259788     NM_001621           AHR
20   chr7   16729182       18259788     NM_006408          AGR2
21   chr7   16729182       18259788     NM_014399       TSPAN13
22   chr7   16729182       18259788     NM_015132         SNX13
23   chr7   16729182       18259788     NM_175886       PRPS1L1
24   chr7   16729182       18259788     NM_176813          AGR3
25   chr7   16729182       18259788     NR_031635     MIR1302-6
26   chr7   16729182       18259788     NR_110013  LOC101927630
27   chr7   16729182       18259788     NR_110014      KCCAT333,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18227117       18518097  NM_001004060         NOMO2
1   chr16   18227117       18518097  NM_001282511        NPIPA8
2   chr16   18227117       18518097     NR_036140     MIR3179-1
3   chr16   18227117       18518097     NR_036142     MIR3180-2
4   chr16   18227117       18518097     NR_036144     MIR3180-3
5   chr16   18227117       18518097     NR_037442     MIR3670-1
6   chr16   18227117       18518097     NR_103772  LOC100288162
7   chr16   18227117       18518097     NR_106971     MIR6511A4
8   chr16   18227117       18518097     NR_107060     MIR6770-2
9   chr16   68579762       69191835  NM_001039690         CHTF8
11  chr16   68579762       69191835  NM_001199280          HAS3
12  chr16   68579762       69191835  NM_001305204         ZFP90
14  chr16   68579762       69191835  NM_001317184          CDH1
15  chr16   68579762       69191835  NM_001317195          CDH3
17  chr16   68579762       69191835     NM_024562        TANGO6
18  chr16   68579762       69191835     NM_032830          UTP4
20  chr16   68579762       69191835     NR_106988     MIR7641-2
21  chr17   14085412       14222811  NM_001007530        CDRT15
22  chr17   14085412       14222811     NM_001303         COX10
23  chr17   14085412       14222811     NM_006041      HS3ST3B1
24  chr17   14085412       14222811     NR_026880      MGC12916
25   chr3  101075856      101250881  NM_001282803         SENP7
27   chr3  101075856      101250881     NR_036433      FAM172BP
28   chr4   69249575       69370666     NM_014058     TMPRSS11E
29   chr7  124897800      125048436     NR_110183  LOC101928254
30   chr7  124897800      125048436     NR_110188  LOC101928283
31   chr9   23855352       25443957  NM_001271706        IZUMO3,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr1   14929420       15438466  NM_001017999         KAZN
5   chr1   14929420       15438466     NR_027136   TMEM51-AS1
6  chr20   14755391       14956489     NM_080676      MACROD2
7  chr20   14755391       14956489     NR_037841  MACROD2-AS1
9   chr9    9807160        9911043     NM_002839        PTPRD,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10  135272954      135386144     NM_000773    CYP2E1
1   chr10  135272954      135386144  NM_001143763     SYCE1
4   chr10  135272954      135386144     NR_002934    SCART1
5   chr10  135272954      135386144     NR_033789    SPRNP1
6   chr14   21874194       22040299  NM_001005465    OR10G3
7   chr14   21874194       22040299  NM_001163380     RAB2B
8   chr14   21874194       22040299  NM_001170629      CHD8
9   chr14   21874194       22040299  NM_001303523      TOX4
10  chr14   21874194       22040299     NM_019852    METTL3
13  chr14   21874194       22040299     NR_111966     SALL2,    chrom  cnv_start  cnv_terminate       tx_name    gene_name
0  chr14   21754667       21860037  NM_001170629         CHD8
1  chr14   21754667       21860037     NM_007192      SUPT16H
2  chr14   21754667       21860037     NM_020366      RPGRIP1
4  chr20   14842527       15148798     NM_080676      MACROD2
5  chr20   14842527       15148798     NR_037841  MACROD2-AS1
7   chr4  189386500      189496772     NR_033869    LINC01060
8   chr6  128609342      128799194  NM_001291982        PTPRK,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143704981      143940930  NM_001123068       PPIAL4G
1    chr1  143704981      143940930  NM_001287385        FAM72C
2    chr1  143704981      143940930  NM_001345942        FAM72D
6    chr1  143704981      143940930     NR_104014     LINC01138
7    chr1  143704981      143940930     NR_111930  LOC100132057
9    chr1  145338693      145495221  NM_001039888      ANKRD34A
10   chr1  145338693      145495221  NM_001277444         NBPF9
11   chr1  145338693      145495221  NM_001278267        NBPF20
12   chr1  145338693      145495221  NM_001302371        NBPF10
13   chr1  145338693      145495221  NM_001313972         TXNIP
15   chr1  145338693      145495221     NM_032305       POLR3GL
16   chr1  145338693      145495221     NM_145277          HFE2
17   chr1  145338693      145495221     NM_153713         LIX1L
18   chr1  145338693      145495221     NR_104217       NBPF25P
19   chr1  145338693      145495221     NR_125967  LOC101928979
20  chr12   85479605       85656629  NM_001079910        LRRIQ1
21  chr15   77652232       77798134  NM_001304505        HMG20A
22  chr15   77652232       77798134     NM_024776         PEAK1
23  chr21   29430009       29834291     NR_126010     LOC284825
25  chr21   29430009       29834291     NR_126012  LOC101927973
26   chr4  169242796      169369784  NM_001012967        DDX60L
28   chr9    9793770       10026188     NM_002839         PTPRD
29   chr9    9793770       10026188     NR_135135  LOC105375972
30   chr9   67109526       67535533     NR_002817        AQP7P1
31   chr9   67109526       67535533     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   59140112       61635041  NM_001085487         MYSM1
1    chr1   59140112       61635041  NM_001113411          FGGY
2    chr1   59140112       61635041  NM_001145511          NFIA
6    chr1   59140112       61635041     NM_002228           JUN
8    chr1   59140112       61635041     NM_015888         HOOK1
9    chr1   59140112       61635041     NM_152377       C1orf87
10   chr1   59140112       61635041     NR_027120         HSD52
11   chr1   59140112       61635041     NR_034014     LINC01135
12   chr1   59140112       61635041     NR_039861       MIR4711
14   chr1   59140112       61635041     NR_110617      NFIA-AS2
16   chr1   59140112       61635041     NR_110626     LINC01358
17   chr1   59140112       61635041     NR_110627  LOC101926944
18   chr1   59140112       61635041     NR_110628  LOC101926964
19   chr1   59140112       61635041     NR_134981        CYP2J2
20  chr14   21842943       22074722  NM_001005465        OR10G3
21  chr14   21842943       22074722  NM_001163380         RAB2B
22  chr14   21842943       22074722  NM_001170629          CHD8
23  chr14   21842943       22074722  NM_001303523          TOX4
24  chr14   21842943       22074722     NM_007192       SUPT16H
25  chr14   21842943       22074722     NM_019852        METTL3
28  chr14   21842943       22074722     NR_002916        SNORD8
29  chr14   21842943       22074722     NR_003029        SNORD9
30  chr14   21842943       22074722     NR_111966         SALL2
32  chr14   81695313       81842133  NM_001256430         STON2
34   chr6  145863727      147421413  NM_001042683         SHPRH
35   chr6  145863727      147421413  NM_001278064          GRM1
37   chr6  145863727      147421413     NM_005670         EPM2A
38   chr6  145863727      147421413     NM_006834         RAB32
39   chr6  145863727      147421413     NM_024694          ADGB
40   chr6  145863727      147421413     NM_032145        FBXO30
41   chr6  145863727      147421413     NR_003954     KATNBL1P6
42   chr6  145863727      147421413     NR_034115    STXBP5-AS1
43   chr6  145863727      147421413     NR_038245  LOC100507557
45   chr6  145863727      147421413     NR_125860  LOC101928661,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  104187820      104391111  NM_001008218         AMY1B
3    chr1  104187820      104391111  NM_001008219         AMY1C
6    chr1  104187820      104391111  NM_001008221         AMY1A
12   chr1  143698473      143897258  NM_001123068       PPIAL4G
13   chr1  143698473      143897258  NM_001287385        FAM72C
14   chr1  143698473      143897258  NM_001345942        FAM72D
17   chr1  143698473      143897258     NR_104014     LINC01138
18   chr1  143698473      143897258     NR_111930  LOC100132057
20  chr11    1075608        1199505  NM_001304359        MUC5AC
21  chr11    1075608        1199505     NM_002457          MUC2
22  chr13  113513346      114032615     NM_000131            F7
23  chr13  113513346      114032615     NM_000504           F10
24  chr13  113513346      114032615  NM_001008895         CUL4A
25  chr13  113513346      114032615  NM_001112732         MCF2L
26  chr13  113513346      114032615  NM_001127202         PCID2
29  chr13  113513346      114032615  NM_001286732         GRTP1
36  chr13  113513346      114032615     NM_003891          PROZ
37  chr13  113513346      114032615     NM_005561         LAMP1
38  chr13  113513346      114032615     NM_015205        ATP11A
39  chr13  113513346      114032615     NR_034002     MCF2L-AS1
40  chr13  113513346      114032615     NR_046541     GRTP1-AS1
41  chr13  113513346      114032615     NR_107042       MIR8075
42  chr13  113513346      114032615     NR_126424       F10-AS1,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr11    4771165        5609258     NM_000184         HBG2
1   chr11    4771165        5609258     NM_000518          HBB
2   chr11    4771165        5609258     NM_000519          HBD
3   chr11    4771165        5609258     NM_000559         HBG1
4   chr11    4771165        5609258  NM_001001916       OR52J3
5   chr11    4771165        5609258  NM_001004748       OR51A2
6   chr11    4771165        5609258  NM_001004749       OR51A7
7   chr11    4771165        5609258  NM_001004750       OR51B6
8   chr11    4771165        5609258  NM_001004752       OR51F1
9   chr11    4771165        5609258  NM_001004753       OR51F2
10  chr11    4771165        5609258  NM_001004754       OR51I2
11  chr11    4771165        5609258  NM_001004755       OR51L1
12  chr11    4771165        5609258  NM_001004756       OR51M1
13  chr11    4771165        5609258  NM_001004757       OR51Q1
14  chr11    4771165        5609258  NM_001004758       OR51S1
15  chr11    4771165        5609258  NM_001004759       OR51T1
16  chr11    4771165        5609258  NM_001004760       OR51V1
17  chr11    4771165        5609258  NM_001005160       OR52A5
18  chr11    4771165        5609258  NM_001005162       OR52B6
19  chr11    4771165        5609258  NM_001005163       OR52D1
20  chr11    4771165        5609258  NM_001005164       OR52E2
21  chr11    4771165        5609258  NM_001005177       OR52R1
22  chr11    4771165        5609258  NM_001005237       OR51G1
23  chr11    4771165        5609258  NM_001005238       OR51G2
24  chr11    4771165        5609258  NM_001005288       OR51I1
25  chr11    4771165        5609258  NM_001005289       OR52H1
26  chr11    4771165        5609258  NM_001005329       OR51A4
27  chr11    4771165        5609258  NM_001005567       OR51B5
28  chr11    4771165        5609258     NM_005330         HBE1
29  chr11    4771165        5609258     NM_012375       OR52A1
30  chr11    4771165        5609258     NM_017481       UBQLN3
31  chr11    4771165        5609258     NM_021801        MMP26
32  chr11    4771165        5609258     NM_033179       OR51B4
33  chr11    4771165        5609258     NM_033180       OR51B2
34  chr11    4771165        5609258     NM_145053       UBQLNL
35  chr11    4771165        5609258     NR_001589        HBBP1
37  chr11    4771165        5609258     NR_121648        BGLT3
38  chr11    4771165        5609258     NR_133006       OLFM5P
39  chr20   14642551       15148252     NM_080676      MACROD2
40  chr20   14642551       15148252     NR_037841  MACROD2-AS1
42  chr22   19009755       19150576  NM_001184781        DGCR2
43  chr22   19009755       19150576     NM_005315         GSC2
44  chr22   19009755       19150576     NM_022719       DGCR14
45  chr22   19009755       19150576     NM_053006        TSSK2
46  chr22   19009755       19150576     NR_024157       DGCR11
47  chr22   19009755       19150576     NR_026651       DGCR10
48  chr22   19009755       19150576     NR_110533        DGCR5
49   chr4   69257465       69572319     NM_001076      UGT2B15
50   chr4   69257465       69572319     NM_001077      UGT2B17
51   chr4   69257465       69572319     NM_014058    TMPRSS11E
52   chr7   85967508       86341211     NM_000840         GRM3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21905198       22103961  NM_001005465        OR10G3
1   chr14   21905198       22103961  NM_001005466        OR10G2
2   chr14   21905198       22103961  NM_001163380         RAB2B
3   chr14   21905198       22103961  NM_001303523          TOX4
4   chr14   21905198       22103961     NM_019852        METTL3
5   chr14   21905198       22103961     NM_020920          CHD8
7   chr14   21905198       22103961     NR_111966         SALL2
9   chr15   52968093       53117083     NM_004498       ONECUT1
10  chr15   52968093       53117083     NM_019600       FAM214A
12  chr17   64592674       64726822     NM_002737         PRKCA
13  chr22   17207679       17318103     NM_175878          XKR3
14  chr22   17207679       17318103     NR_003607       HSFY1P1
15  chr22   17207679       17318103     NR_134584  LOC101929350
16   chr7  110708986      110860466  NM_001099658         LRRN3
17   chr7  110708986      110860466  NM_001244606        IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr22   19024105       19244052  NM_001184781      DGCR2
1  chr22   19024105       19244052  NM_001256534    SLC25A1
2  chr22   19024105       19244052     NM_001835     CLTCL1
3  chr22   19024105       19244052     NM_005315       GSC2
5  chr22   19024105       19244052     NM_022719     DGCR14
6  chr22   19024105       19244052     NM_053006      TSSK2
7  chr22   19024105       19244052     NR_024157     DGCR11
8  chr22   19024105       19244052     NR_103767  LINC01311
9   chr3   80800256       81198323     NR_132411  LOC728290,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   37366484       37558862     NM_052997      ANKRD30A
1   chr15   28258176       28615930     NM_000275          OCA2
3   chr15   28258176       28615930     NM_004667         HERC2
4   chr16   16419661       16670581  NM_001282511        NPIPA8
5   chr16   16419661       16670581     NR_036447        PKD1P1
6   chr16   16419661       16670581     NR_103772  LOC100288162
7   chr16   16419661       16670581     NR_106971     MIR6511A4
8   chr16   16419661       16670581     NR_107060     MIR6770-2
9    chr2   51048716       51421190  NM_001330079         NRXN1
12   chr2   51048716       51421190     NR_135237     LOC730100
13   chr3  105306470      105462012  NM_001321786          CBLB
19   chr6  162706361      162828473     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21875333       22463085  NM_001001912        OR4E2
1   chr14   21875333       22463085  NM_001005465       OR10G3
2   chr14   21875333       22463085  NM_001005466       OR10G2
3   chr14   21875333       22463085  NM_001163380        RAB2B
4   chr14   21875333       22463085  NM_001170629         CHD8
5   chr14   21875333       22463085  NM_001303523         TOX4
6   chr14   21875333       22463085  NM_001317107        OR4E1
7   chr14   21875333       22463085     NM_019852       METTL3
10  chr14   21875333       22463085     NR_111966        SALL2
12  chr20   14670750       14916042     NM_080676      MACROD2
13  chr20   14670750       14916042     NR_037841  MACROD2-AS1
15   chr9   14882484       15029496     NM_144966        FREM1
16   chr9   14882484       15029496     NR_003920    LOC389705,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0    chr1   82190605       82305223  NM_001297704         ADGRL2
2   chr12   16258192       16369061  NM_001170798        SLC15A5
3   chr16   29517341       30402178     NM_000034          ALDOA
4   chr16   29517341       30402178  NM_001014999          SLX1A
5   chr16   29517341       30402178  NM_001017390        SULT1A4
6   chr16   29517341       30402178  NM_001030288            SPN
7   chr16   29517341       30402178  NM_001031827          BOLA2
8   chr16   29517341       30402178  NM_001040056          MAPK3
9   chr16   29517341       30402178  NM_001083613        TMEM219
10  chr16   29517341       30402178  NM_001109659       C16orf92
12  chr16   29517341       30402178  NM_001114099         SEZ6L2
14  chr16   29517341       30402178  NM_001145524          YPEL3
15  chr16   29517341       30402178  NM_001193333         CORO1A
16  chr16   29517341       30402178  NM_001214906          ZNF48
19  chr16   29517341       30402178  NM_001243646         CD2BP2
20  chr16   29517341       30402178  NM_001256269          KIF22
22  chr16   29517341       30402178  NM_001256443          PRRT2
23  chr16   29517341       30402178  NM_001276275            MAZ
24  chr16   29517341       30402178  NM_001282062          DOC2A
27  chr16   29517341       30402178  NM_001286585          CDIPT
28  chr16   29517341       30402178  NM_001293204            MVP
29  chr16   29517341       30402178  NM_001303507          PPP4C
30  chr16   29517341       30402178  NM_001304562         INO80E
31  chr16   29517341       30402178  NM_001318249           QPRT
32  chr16   29517341       30402178  NM_001318504         FAM57B
33  chr16   29517341       30402178  NM_001321892        NPIPB13
34  chr16   29517341       30402178  NM_001324458          MYLPF
39  chr16   29517341       30402178     NM_003609         HIRIP3
40  chr16   29517341       30402178     NM_004608           TBX6
41  chr16   29517341       30402178     NM_004783          TAOK2
45  chr16   29517341       30402178     NM_015527       TBC1D10B
47  chr16   29517341       30402178     NM_024307          GDPD3
48  chr16   29517341       30402178     NM_024516          PAGR1
51  chr16   29517341       30402178     NM_052838          SEPT1
52  chr16   29517341       30402178     NM_152338           ZG16
53  chr16   29517341       30402178     NM_175900       C16orf54
54  chr16   29517341       30402178     NM_178863         KCTD13
55  chr16   29517341       30402178     NM_181718         ASPHD1
57  chr16   29517341       30402178     NR_002453         SMG1P5
58  chr16   29517341       30402178     NR_002454      LOC606724
59  chr16   29517341       30402178     NR_002556      LOC388242
60  chr16   29517341       30402178     NR_015396      CDIPT-AS1
62  chr16   29517341       30402178     NR_037608  SLX1A-SULT1A3
63  chr16   29517341       30402178     NR_049833      MIR3680-2
65  chr16   29517341       30402178     NR_135192   LOC101928595
67  chr16   29517341       30402178     NR_135305         SMG1P2,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr11  108540522      108661100     NM_004398          DDX10
1   chr14   21758523       22000923  NM_001163380          RAB2B
2   chr14   21758523       22000923  NM_001170629           CHD8
3   chr14   21758523       22000923  NM_001303523           TOX4
4   chr14   21758523       22000923     NM_007192        SUPT16H
5   chr14   21758523       22000923     NM_019852         METTL3
6   chr14   21758523       22000923     NM_020366        RPGRIP1
9   chr14   21758523       22000923     NR_002916         SNORD8
10  chr14   21758523       22000923     NR_003029         SNORD9
11  chr14   21758523       22000923     NR_111966          SALL2
13  chr15   36179948       36431501     NR_039735        MIR4510
14  chr16   29460403       29773090  NM_001014999          SLX1A
15  chr16   29460403       29773090  NM_001017390        SULT1A4
16  chr16   29460403       29773090  NM_001030288            SPN
17  chr16   29460403       29773090  NM_001031827          BOLA2
18  chr16   29460403       29773090  NM_001318249           QPRT
19  chr16   29460403       29773090  NM_001320622   BOLA2-SMG1P6
22  chr16   29460403       29773090     NM_175900       C16orf54
23  chr16   29460403       29773090     NR_002454      LOC606724
24  chr16   29460403       29773090     NR_002556      LOC388242
25  chr16   29460403       29773090     NR_037608  SLX1A-SULT1A3
26  chr16   29460403       29773090     NR_049833      MIR3680-2
28  chr16   29460403       29773090     NR_135305         SMG1P2
30   chr2   62230559       62358225  NM_001321781         COMMD1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12802081       12949302  NM_001009611       PRAMEF4
1    chr1   12802081       12949302  NM_001013631      HNRNPCL1
2    chr1   12802081       12949302  NM_001080830      PRAMEF12
3    chr1   12802081       12949302  NM_001146181      HNRNPCL3
4    chr1   12802081       12949302  NM_001146344      PRAMEF11
5    chr1   12802081       12949302  NM_001294139       PRAMEF1
6    chr1   12802081       12949302  NM_001302551      HNRNPCL4
8    chr1   12802081       12949302     NM_023014       PRAMEF2
9    chr1   12802081       12949302     NM_152290      C1orf158
10  chr15   20702348       20862659  NM_001145004      GOLGA6L6
11  chr15   20702348       20862659     NR_027411      GOLGA8CP
12  chr15   20702348       20862659     NR_036432       HERC2P3
13  chr15   28549920       29839583  NM_001130414         APBA2
14  chr15   28549920       29839583  NM_001282468       GOLGA8M
15  chr15   28549920       29839583     NM_004667         HERC2
16  chr15   28549920       29839583     NM_015307      FAM189A1
17  chr15   28549920       29839583     NM_138704        NSMCE3
18  chr15   28549920       29839583     NR_026589       WHAMMP2
19  chr15   28549920       29839583     NR_033351       GOLGA8F
21  chr15   28549920       29839583     NR_033353       GOLGA8G
23  chr15   28549920       29839583     NR_036443       HERC2P9
24  chr15   28549920       29839583     NR_036475  LOC100289656
25  chr15   28549920       29839583     NR_037599     PDCD6IPP2
26  chr15   28549920       29839583     NR_039734     MIR4509-3
28  chr15   28549920       29839583     NR_047567     GOLGA6L7P
29  chr15   85608078       86031997  NM_001243137         PDE8A
30  chr15   85608078       86031997  NM_001310153      GOLGA6L3
31  chr15   85608078       86031997     NM_006738        AKAP13
33  chr15   85608078       86031997     NR_049748     LOC642423
34  chr15   85608078       86031997     NR_106993       MIR7706
35   chr4   69266384       69397397     NM_014058     TMPRSS11E
36   chr4  189437692      189540524     NR_033869     LINC01060,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  145308415      146219291  NM_001012758        NUDT17
1    chr1  145308415      146219291  NM_001039888      ANKRD34A
2    chr1  145308415      146219291  NM_001097612        GPR89A
3    chr1  145308415      146219291  NM_001101663        NBPF11
4    chr1  145308415      146219291  NM_001184795        PEX11B
5    chr1  145308415      146219291  NM_001201325         PDZK1
6    chr1  145308415      146219291  NM_001277444         NBPF9
7    chr1  145308415      146219291  NM_001278267        NBPF20
8    chr1  145308415      146219291  NM_001280799       ANKRD35
9    chr1  145308415      146219291  NM_001302371        NBPF10
10   chr1  145308415      146219291  NM_001303040        ITGA10
11   chr1  145308415      146219291  NM_001303456        POLR3C
12   chr1  145308415      146219291  NM_001313972         TXNIP
14   chr1  145308415      146219291     NM_005105         RBM8A
15   chr1  145308415      146219291     NM_006099         PIAS3
18   chr1  145308415      146219291     NM_007053         CD160
19   chr1  145308415      146219291     NM_014455        RNF115
20   chr1  145308415      146219291     NM_032305       POLR3GL
21   chr1  145308415      146219291     NM_145277          HFE2
22   chr1  145308415      146219291     NM_153713         LIX1L
23   chr1  145308415      146219291     NR_002328        GNRHR2
27   chr1  145308415      146219291     NR_104217       NBPF25P
29   chr1  145308415      146219291     NR_106794       MIR6736
31   chr1  145308415      146219291     NR_111936       PDZK1P1
32   chr1  145308415      146219291     NR_125967  LOC101928979
33   chr1  145308415      146219291     NR_135559  LOC100505824
34  chr12   27048938       27150064  NM_001171887      FGFR1OP2
36  chr12   27048938       27150064     NM_016551        TM7SF3
37  chr12   27048938       27150064     NM_018164          ASUN
38  chr13   93099942       93313594     NM_004466          GPC5
39  chr13   93099942       93313594     NR_049840      MIR548AS
40  chr16   18340150       19346347  NM_001004060         NOMO2
41  chr16   18340150       19346347     NM_001019        RPS15A
42  chr16   18340150       19346347  NM_001160364          TMC7
43  chr16   18340150       19346347  NM_001190983          COQ7
44  chr16   18340150       19346347  NM_001256720       CLEC19A
45  chr16   18340150       19346347  NM_001282511        NPIPA8
47  chr16   18340150       19346347  NM_001308157         SYT17
48  chr16   18340150       19346347  NM_001313858       ARL6IP1
51  chr16   18340150       19346347     NM_015092          SMG1
55  chr16   18340150       19346347     NR_003569       ABCC6P1
56  chr16   18340150       19346347     NR_028028      ITPRIPL2
57  chr16   18340150       19346347     NR_036140     MIR3179-1
58  chr16   18340150       19346347     NR_036142     MIR3180-2
59  chr16   18340150       19346347     NR_036144     MIR3180-3
60  chr16   18340150       19346347     NR_037442     MIR3670-1
61  chr16   18340150       19346347     NR_103772  LOC100288162
62  chr16   18340150       19346347     NR_106971     MIR6511A4
63  chr16   18340150       19346347     NR_107060     MIR6770-2
64  chr16   18340150       19346347     NR_119379  LOC102723385
66   chr6  154085196      154479142  NM_001008503         OPRM1
68   chr6  154085196      154479142  NM_001130699        IPCEF1
79   chr7    8687959        8864823     NM_152745         NXPH1
80   chr7   64080095       64186014  NM_001282360        ZNF107
82   chr7   64080095       64186014     NR_106898       MIR6839,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21755445       21939759  NM_001163380     RAB2B
1  chr14   21755445       21939759  NM_001170629      CHD8
2  chr14   21755445       21939759     NM_007192   SUPT16H
3  chr14   21755445       21939759     NM_020366   RPGRIP1
6  chr14   21755445       21939759     NR_002916    SNORD8
7  chr14   21755445       21939759     NR_003029    SNORD9
8   chr9  116343115      116487147  NM_001276260      RGS3,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr14   21899054       22022396  NM_001163380     RAB2B
1  chr14   21899054       22022396  NM_001170629      CHD8
2  chr14   21899054       22022396  NM_001303523      TOX4
3  chr14   21899054       22022396     NM_019852    METTL3
6  chr14   21899054       22022396     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21941998       22065940  NM_001005465    OR10G3
1   chr14   21941998       22065940  NM_001163380     RAB2B
2   chr14   21941998       22065940  NM_001303523      TOX4
3   chr14   21941998       22065940     NM_019852    METTL3
5   chr14   21941998       22065940     NR_111966     SALL2
7   chr22   19882094       20184835     NM_000754      COMT
10  chr22   19882094       20184835  NM_001190326     DGCR8
11  chr22   19882094       20184835  NM_001243537   CCDC188
12  chr22   19882094       20184835  NM_001278639    RANBP1
15  chr22   19882094       20184835  NM_001282512    TXNRD2
16  chr22   19882094       20184835  NM_001283116    TANGO2
19  chr22   19882094       20184835     NM_001670     ARVCF
22  chr22   19882094       20184835     NM_013373    ZDHHC8
23  chr22   19882094       20184835     NM_022727    TRMT2A
24  chr22   19882094       20184835     NR_029706    MIR185
25  chr22   19882094       20184835     NR_031706   MIR1306
26  chr22   19882094       20184835     NR_037412   MIR3618
27  chr22   19882094       20184835     NR_039918   MIR4761
28  chr22   19882094       20184835     NR_106874   MIR6816
29   chr3    2216316        2421054  NM_001206955     CNTN4
31   chr4      99769         430409  NM_001039127    ZNF718
32   chr4      99769         430409  NM_001137608    ZNF732
35   chr4      99769         430409     NM_003441    ZNF141
36   chr4      99769         430409     NR_002451   ABCA11P
37   chr4      99769         430409     NR_027481   ZNF876P
38   chr4      99769         430409     NR_030297    MIR571
41   chr7  110713799      110908130  NM_001099658     LRRN3
42   chr7  110713799      110908130  NM_001244606    IMMP2L,    chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr16   61810031       61922779     NM_001796          CDH8
1   chr2   51153323       51377377  NM_001330079         NRXN1
4   chr2   51153323       51377377     NR_135237     LOC730100
5   chr2  186129794      186718872     NM_173651         FSIP2
6   chr2  186129794      186718872     NR_110214  LOC101927196
9   chr2  186129794      186718872     NR_144453     FSIP2-AS1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  237465022      238783534     NM_001035          RYR2
1    chr1  237465022      238783534     NM_021186           ZP4
2    chr1  237465022      238783534     NR_015407     LINC01139
3    chr1  237465022      238783534     NR_027247  LOC100130331
4    chr1  237465022      238783534     NR_039626       MIR4428
5   chr16   16390970       16524468  NM_001282511        NPIPA8
6   chr16   16390970       16524468     NR_036140     MIR3179-1
7   chr16   16390970       16524468     NR_036141     MIR3180-1
8   chr16   16390970       16524468     NR_036142     MIR3180-2
9   chr16   16390970       16524468     NR_036447        PKD1P1
10  chr16   16390970       16524468     NR_103772  LOC100288162
11  chr16   16390970       16524468     NR_106766     MIR6511A1
12  chr16   16390970       16524468     NR_106971     MIR6511A4
13  chr16   16390970       16524468     NR_107060     MIR6770-2
14  chr16   16390970       16524468     NR_128713     MIR3670-4
15   chr2  110155867      110316135  NM_001099289        SH3RF3
16   chr2  110155867      110316135  NM_001321504        SEPT10
18   chr7  143706861      143825234  NM_001004135        OR2A12
19   chr7  143706861      143825234  NM_001004488        OR2A25
20   chr7  143706861      143825234  NM_001005480         OR2A2
21   chr7  143706861      143825234     NM_012365         OR2A5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28452655       29243811  NM_001130414         APBA2
1   chr15   28452655       29243811  NM_001282468       GOLGA8M
2   chr15   28452655       29243811     NM_004667         HERC2
3   chr15   28452655       29243811     NR_026589       WHAMMP2
4   chr15   28452655       29243811     NR_033351       GOLGA8F
6   chr15   28452655       29243811     NR_033353       GOLGA8G
8   chr15   28452655       29243811     NR_036443       HERC2P9
9   chr15   28452655       29243811     NR_036475  LOC100289656
10  chr15   28452655       29243811     NR_037599     PDCD6IPP2
11  chr15   28452655       29243811     NR_039734     MIR4509-3
13  chr15   28452655       29243811     NR_047567     GOLGA6L7P
14   chr9   28519550       28635129  NM_001258282        LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143609139      143867669  NM_001123068       PPIAL4G
1    chr1  143609139      143867669     NR_104014     LINC01138
2    chr1  143609139      143867669     NR_106967       MIR6077
3    chr1  143609139      143867669     NR_111930  LOC100132057
4   chr11   60312214       60651650  NM_001310141        MS4A18
5   chr11   60312214       60651650     NM_004778        PTGDR2
6   chr11   60312214       60651650     NM_024098        CCDC86
7   chr11   60312214       60651650     NM_031457         MS4A8
8   chr11   60312214       60651650     NM_152717        MS4A15
9   chr11   60312214       60651650     NM_206893        MS4A10
10  chr11   60312214       60651650     NM_207341           ZP1
11  chr11   60312214       60651650     NR_026946     LINC00301
12  chr16   16405933       16872193  NM_001282511        NPIPA8
13  chr16   16405933       16872193     NR_036447        PKD1P1
14  chr16   16405933       16872193     NR_103772  LOC100288162
15  chr16   16405933       16872193     NR_106766     MIR6511A1
16  chr16   16405933       16872193     NR_106971     MIR6511A4
17  chr16   16405933       16872193     NR_107060     MIR6770-2
18   chr8   50556744       51203654  NM_001287813         SNTG1
23   chr9   30389877       30534801     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143469286      143787165  NM_001123068       PPIAL4G
1    chr1  143469286      143787165     NR_104014     LINC01138
2    chr1  143469286      143787165     NR_106967       MIR6077
3    chr1  143469286      143787165     NR_111930  LOC100132057
4   chr15   28226053       28351349     NM_000275          OCA2
6    chr2  110200182      110362171  NM_001099289        SH3RF3
7    chr2  110200182      110362171  NM_001321504        SEPT10
9   chr22   17239153       17509388  NM_001037814          GAB4
10  chr22   17239153       17509388     NM_175878          XKR3
11  chr22   17239153       17509388     NR_003607       HSFY1P1
12   chr9   30337150       30579200     NR_046204     LINC01242
13   chr9   38949449       39164636     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   89018191       89163264     NR_024397    NUTM2A-AS1
1   chr10   89018191       89163264     NR_029408     LINC00863
2   chr10   89018191       89163264     NR_046091     LINC00864
3   chr10   89018191       89163264     NR_075100        NUTM2D
5   chr14   21935717       22337216  NM_001001912         OR4E2
6   chr14   21935717       22337216  NM_001005465        OR10G3
7   chr14   21935717       22337216  NM_001005466        OR10G2
8   chr14   21935717       22337216  NM_001163380         RAB2B
9   chr14   21935717       22337216  NM_001303523          TOX4
10  chr14   21935717       22337216  NM_001317107         OR4E1
11  chr14   21935717       22337216     NM_019852        METTL3
13  chr14   21935717       22337216     NR_111966         SALL2
15  chr22   17170011       17286682     NM_175878          XKR3
16  chr22   17170011       17286682     NR_134584  LOC101929350
17   chr5  175397144      175532453  NM_001265615       FAM153B
18   chr5  175397144      175532453     NR_103794  LOC100996385
19   chr7   64108737       64312028  NM_001160183        ZNF138
20   chr7   64108737       64312028  NM_001282360        ZNF107
23   chr7   64108737       64312028     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  241740179      241853759     NM_001821          CHML
1    chr1  241740179      241853759     NM_003679           KMO
2    chr1  241740179      241853759     NM_014322          OPN3
3    chr1  241740179      241853759     NM_144625         WDR64
4   chr12   71461326       71730629     NM_004616        TSPAN8
5   chr13   22336735       22470883     NR_047040     LINC00424
6   chr16   16399201       17858652  NM_001282511        NPIPA8
7   chr16   16399201       17858652     NM_022166         XYLT1
8   chr16   16399201       17858652     NR_036141     MIR3180-1
9   chr16   16399201       17858652     NR_036142     MIR3180-2
10  chr16   16399201       17858652     NR_036447        PKD1P1
11  chr16   16399201       17858652     NR_103772  LOC100288162
12  chr16   16399201       17858652     NR_106766     MIR6511A1
13  chr16   16399201       17858652     NR_106971     MIR6511A4
14  chr16   16399201       17858652     NR_107060     MIR6770-2
15  chr16   16399201       17858652     NR_128713     MIR3670-4
16  chr16   16399201       17858652     NR_135179  LOC102723692
17  chr16   18296644       18436678  NM_001282511        NPIPA8
18  chr16   18296644       18436678     NR_103772  LOC100288162
19   chr7  110770415      112441061  NM_001134468        LSMEM1
20   chr7  110770415      112441061  NM_001197079         IFRD1
22   chr7  110770415      112441061  NM_001244606        IMMP2L
23   chr7  110770415      112441061  NM_001287497       TMEM168
25   chr7  110770415      112441061     NM_014705         DOCK4
26   chr7  110770415      112441061     NM_021994        ZNF277
29   chr7  110770415      112441061     NR_103806     DOCK4-AS1
30   chr7  110770415      112441061     NR_110158  LOC101928012
31   chr7  110770415      112441061     NR_110160  LOC100996249,     chrom  cnv_start  cnv_terminate       tx_name      gene_name
0   chr14   21881822       22880196  NM_001001912          OR4E2
1   chr14   21881822       22880196  NM_001005465         OR10G3
2   chr14   21881822       22880196  NM_001005466         OR10G2
3   chr14   21881822       22880196  NM_001163380          RAB2B
4   chr14   21881822       22880196  NM_001170629           CHD8
5   chr14   21881822       22880196  NM_001303523           TOX4
6   chr14   21881822       22880196  NM_001317107          OR4E1
7   chr14   21881822       22880196     NM_019852         METTL3
10  chr14   21881822       22880196     NR_111966          SALL2
12  chr19    9405890        9625664  NM_001172650  ZNF559-ZNF177
13  chr19    9405890        9625664  NM_001172651         ZNF177
14  chr19    9405890        9625664  NM_001202406         ZNF559
17  chr19    9405890        9625664  NM_001271314         ZNF266
19  chr19    9405890        9625664     NM_152476         ZNF560
20  chr19    9405890        9625664     NM_198535         ZNF699
21   chr2   39673739       39773761     NR_037875      LOC728730
22   chr4  121661587      121860241     NM_018699          PRDM5
23   chr9   28634054       28798103  NM_001258282         LINGO2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   47898297       48125875  NM_001113498         MDGA2
1   chr14   78324263       78566813  NM_001142545         ADCK1
2    chr2   51311333       51467342     NR_135237     LOC730100
3    chr2   81571748       82023113     NR_110161  LOC100507201
4   chr22   19051207       19244872  NM_001184781         DGCR2
5   chr22   19051207       19244872  NM_001256534       SLC25A1
6   chr22   19051207       19244872     NM_001835        CLTCL1
7   chr22   19051207       19244872     NM_005315          GSC2
9   chr22   19051207       19244872     NM_022719        DGCR14
10  chr22   19051207       19244872     NM_053006         TSSK2
11  chr22   19051207       19244872     NR_103767     LINC01311
12   chr3  193129290      193812061     NM_015560          OPA1
13   chr3  193129290      193812061     NM_032279       ATP13A4
14   chr3  193129290      193812061     NR_027764       DPPA2P3
15   chr3  193129290      193812061     NR_033944     LOC647323
16   chr3  193129290      193812061     NR_046634      OPA1-AS1
17   chr3  193129290      193812061     NR_046726   ATP13A4-AS1
19   chr3  193129290      193812061     NR_136179     LOC285389
22   chr6  120277844      120460742     NR_036098       MIR3144,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143687959      143919588  NM_001123068       PPIAL4G
1    chr1  143687959      143919588  NM_001287385        FAM72C
2    chr1  143687959      143919588  NM_001345942        FAM72D
6    chr1  143687959      143919588     NR_104014     LINC01138
7    chr1  143687959      143919588     NR_111930  LOC100132057
9   chr11   89075884       89853805  NM_001105522      TRIM49D2
11  chr11   89075884       89853805  NM_001136486        TRIM64
12  chr11   89075884       89853805  NM_001143837          NOX4
13  chr11   89075884       89853805  NM_001143975        UBTFL1
14  chr11   89075884       89853805  NM_001164397       TRIM64B
15  chr11   89075884       89853805  NM_001195234       TRIM49C
16  chr11   89075884       89853805  NM_001206627      TRIM49D1
18  chr11   89075884       89853805  NM_001271942        TRIM77
23  chr11   89075884       89853805     NM_020358        TRIM49
24  chr11   89075884       89853805     NM_153696        FOLH1B
25  chr11   89075884       89853805     NR_028346      TRIM53AP
28  chr15   20627257       20756248  NM_001145004      GOLGA6L6
29  chr15   20627257       20756248     NR_036432       HERC2P3
30   chr5   31200599       31477506     NM_004932          CDH6
31   chr5   31200599       31477506     NM_013235        DROSHA
32   chr8   15275851       15507902     NM_006765         TUSC3,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21770121       22268591  NM_001001912      OR4E2
1   chr14   21770121       22268591  NM_001005465     OR10G3
2   chr14   21770121       22268591  NM_001005466     OR10G2
3   chr14   21770121       22268591  NM_001163380      RAB2B
4   chr14   21770121       22268591  NM_001170629       CHD8
5   chr14   21770121       22268591  NM_001303523       TOX4
6   chr14   21770121       22268591  NM_001317107      OR4E1
7   chr14   21770121       22268591     NM_007192    SUPT16H
8   chr14   21770121       22268591     NM_019852     METTL3
9   chr14   21770121       22268591     NM_020366    RPGRIP1
12  chr14   21770121       22268591     NR_002916     SNORD8
13  chr14   21770121       22268591     NR_003029     SNORD9
14  chr14   21770121       22268591     NR_111966      SALL2
16   chr4   66476418       66617434  NM_001281766      EPHA5
19   chr4   66476418       66617434     NR_034138  EPHA5-AS1
20   chr4   69146463       69287576  NM_001031732     YTHDC1
21   chr7    3423249        3555066     NM_152744       SDK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21845206       22070124  NM_001005465        OR10G3
1   chr14   21845206       22070124  NM_001163380         RAB2B
2   chr14   21845206       22070124  NM_001170629          CHD8
3   chr14   21845206       22070124  NM_001303523          TOX4
4   chr14   21845206       22070124     NM_007192       SUPT16H
5   chr14   21845206       22070124     NM_019852        METTL3
8   chr14   21845206       22070124     NR_002916        SNORD8
9   chr14   21845206       22070124     NR_003029        SNORD9
10  chr14   21845206       22070124     NR_111966         SALL2
12  chr17   70959020       71336875     NM_001050         SSTR2
13  chr17   70959020       71336875  NM_001098832       FAM104A
14  chr17   70959020       71336875  NM_001100621      C17orf80
16  chr17   70959020       71336875  NM_001129885        CPSF4L
17  chr17   70959020       71336875  NM_001144952          SDK2
21  chr17   70959020       71336875     NM_012121      CDC42EP4
22  chr17   70959020       71336875     NM_018714          COG1
23  chr17   70959020       71336875     NM_139177      SLC39A11
24   chr2  185141200      185265840     NR_039638     MIR548AE1
25  chr20   14627795       14737881     NM_080676       MACROD2
26  chr22   17223820       17652245  NM_001037814          GAB4
27  chr22   17223820       17652245  NM_001163079         CECR6
28  chr22   17223820       17652245  NM_001289905        IL17RA
29  chr22   17223820       17652245     NM_017829         CECR5
32  chr22   17223820       17652245     NM_175878          XKR3
33  chr22   17223820       17652245     NR_003607       HSFY1P1
34  chr22   17223820       17652245     NR_015352         CECR7
35  chr22   17223820       17652245     NR_024482     CECR5-AS1
36  chr22   17223820       17652245     NR_103793  LOC100996342
37  chr22   17223820       17652245     NR_134584  LOC101929350
38   chr4  108645673      108886742  NM_001136258         SGMS2
40   chr4  108645673      108886742     NM_183075        CYP2U1
41   chr4  108645673      108886742     NR_125929  LOC101929595,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18263686       18497549  NM_001282511        NPIPA8
1   chr16   18263686       18497549     NR_036142     MIR3180-2
2   chr16   18263686       18497549     NR_036144     MIR3180-3
3   chr16   18263686       18497549     NR_103772  LOC100288162
4   chr16   18263686       18497549     NR_106971     MIR6511A4
5   chr16   18263686       18497549     NR_107060     MIR6770-2
6    chr2   35372181       38288642  NM_001032377       SULT6B1
7    chr2   35372181       38288642  NM_001135652       EIF2AK2
8    chr2   35372181       38288642  NM_001170791         RMDN2
11   chr2   35372181       38288642  NM_001177969           VIT
13   chr2   35372181       38288642  NM_001270436      CDC42EP3
15   chr2   35372181       38288642  NM_001278505      GPATCH11
18   chr2   35372181       38288642  NM_001322374       CEBPZOS
20   chr2   35372181       38288642     NM_003162          STRN
21   chr2   35372181       38288642     NM_005102          FEZ2
22   chr2   35372181       38288642     NM_005760         CEBPZ
23   chr2   35372181       38288642     NM_005813         PRKD3
24   chr2   35372181       38288642     NM_012413          QPCT
25   chr2   35372181       38288642     NM_016441         CRIM1
26   chr2   35372181       38288642     NM_019024       HEATR5B
28   chr2   35372181       38288642     NM_144736       NDUFAF7
29   chr2   35372181       38288642     NR_037631  LOC100288911
30   chr2   35372181       38288642     NR_039629      MIR548AD
31   chr2   35372181       38288642     NR_102712     RMDN2-AS1
32   chr2   35372181       38288642     NR_110011     LINC00211
35   chr3    1113901        1611757  NM_001289081         CNTN6,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   84014460       84147710  NM_001142699          DLG2
3   chr16   14991713       15104327  NM_001285445        PDXDC1
9   chr16   14991713       15104327     NM_006985        NPIPA1
10  chr16   14991713       15104327     NR_036140     MIR3179-1
11  chr16   14991713       15104327     NR_036141     MIR3180-1
12  chr16   14991713       15104327     NR_036142     MIR3180-2
13  chr16   14991713       15104327     NR_103772  LOC100288162
14  chr16   14991713       15104327     NR_106970     MIR6511A3
15  chr16   14991713       15104327     NR_107060     MIR6770-2
16  chr16   14991713       15104327     NR_128713     MIR3670-4
17   chr4  121609667      121915731     NM_018699         PRDM5
18   chr7   82900862       83304893  NM_001178129        SEMA3E
20   chr7  109791273      111281351  NM_001099658         LRRN3
21   chr7  109791273      111281351  NM_001244606        IMMP2L
23   chr8   48491054       49223894  NM_001080394         SPIDR
24   chr8   48491054       49223894     NM_003350        UBE2V2
25   chr8   48491054       49223894     NM_005195         CEBPD
26   chr8   48491054       49223894     NM_006904         PRKDC
27   chr8   48491054       49223894     NM_182746          MCM4
28   chr9   44299547       44544443     NR_121564  LOC101927827
29   chr9   44299547       44544443     NR_126050  LOC103908605,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143623806      143745486     NR_104014     LINC01138
1    chr1  143623806      143745486     NR_106967       MIR6077
2    chr1  143623806      143745486     NR_111930  LOC100132057
3   chr10   56500733       56619962  NM_001142770        PCDH15
6   chr14   21843684       22455757  NM_001001912         OR4E2
7   chr14   21843684       22455757  NM_001005465        OR10G3
8   chr14   21843684       22455757  NM_001005466        OR10G2
9   chr14   21843684       22455757  NM_001163380         RAB2B
10  chr14   21843684       22455757  NM_001170629          CHD8
11  chr14   21843684       22455757  NM_001303523          TOX4
12  chr14   21843684       22455757  NM_001317107         OR4E1
13  chr14   21843684       22455757     NM_007192       SUPT16H
14  chr14   21843684       22455757     NM_019852        METTL3
17  chr14   21843684       22455757     NR_002916        SNORD8
18  chr14   21843684       22455757     NR_003029        SNORD9
19  chr14   21843684       22455757     NR_111966         SALL2
21  chr15   20710962       20945647  NM_001145004      GOLGA6L6
22  chr15   20710962       20945647     NR_027411      GOLGA8CP
23  chr15   20710962       20945647     NR_027992        NBEAP1
24  chr15   20710962       20945647     NR_036432       HERC2P3
25  chr15   30226593       30359469  NM_001301025          TJP1
26   chr3    1103775        1247777  NM_001289081         CNTN6
27   chr9   28577019       29009250  NM_001258282        LINGO2
29   chr9   28577019       29009250     NR_030597        MIR876
30   chr9   28577019       29009250     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   28433733       29858999  NM_001130414         APBA2
1   chr15   28433733       29858999  NM_001282468       GOLGA8M
2   chr15   28433733       29858999     NM_004667         HERC2
3   chr15   28433733       29858999     NM_015307      FAM189A1
4   chr15   28433733       29858999     NM_138704        NSMCE3
5   chr15   28433733       29858999     NR_026589       WHAMMP2
6   chr15   28433733       29858999     NR_033351       GOLGA8F
8   chr15   28433733       29858999     NR_033353       GOLGA8G
10  chr15   28433733       29858999     NR_036443       HERC2P9
11  chr15   28433733       29858999     NR_036475  LOC100289656
12  chr15   28433733       29858999     NR_037599     PDCD6IPP2
13  chr15   28433733       29858999     NR_039734     MIR4509-3
15  chr15   28433733       29858999     NR_047567     GOLGA6L7P
16  chr16   79765145       79892156     NR_104660     LINC01229
18  chr16   79765145       79892156     NR_104663        MAFTRR
19   chr2   51988483       52157940     NR_135237     LOC730100
20   chr2  186513558      188991694  NM_001144999         ITGAV
21   chr2  186513558      188991694  NM_001271751        CALCRL
22   chr2  186513558      188991694  NM_001318941          TFPI
25   chr2  186513558      188991694     NM_018471        ZC3H15
26   chr2  186513558      188991694     NM_173651         FSIP2
27   chr2  186513558      188991694     NM_177454       FAM171B
28   chr2  186513558      188991694     NM_182521        ZSWIM2
29   chr2  186513558      188991694     NR_110214  LOC101927196
32   chr2  186513558      188991694     NR_110218     LINC01473
33   chr2  186513558      188991694     NR_126396     LINC01090
34   chr2  186513558      188991694     NR_144453     FSIP2-AS1
36   chr7  153872910      154277705  NM_001039350          DPP6,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1  102444908      102606020     NR_110211      OLFM3
1   chr10   67581322       67692834  NM_001127384     CTNNA3
3   chr11   67271695       67403696     NM_000852      GSTP1
4   chr11   67271695       67403696  NM_001166102     NDUFV1
5   chr11   67271695       67403696  NM_001243750      NUDT8
6   chr11   67271695       67403696  NM_001318496      CABP2
7   chr11   67271695       67403696     NM_004910    PITPNM1
8   chr11   67271695       67403696     NM_005851    CDK2AP2
9   chr11   67271695       67403696     NM_005995      TBX10
11  chr11   67271695       67403696     NR_033791     DOC2GP
13  chr11   67271695       67403696     NR_130935   C11orf72
14  chr14   21858208       22086631  NM_001005465     OR10G3
15  chr14   21858208       22086631  NM_001163380      RAB2B
16  chr14   21858208       22086631  NM_001170629       CHD8
17  chr14   21858208       22086631  NM_001303523       TOX4
18  chr14   21858208       22086631     NM_019852     METTL3
21  chr14   21858208       22086631     NR_002916     SNORD8
22  chr14   21858208       22086631     NR_003029     SNORD9
23  chr14   21858208       22086631     NR_111966      SALL2
25  chr14   42196901       42413665  NM_001346175      LRFN5
26  chr15   30253108       30359648  NM_001301025       TJP1
27   chr4    8964107        9327736  NM_001242326   USP17L25
28   chr4    8964107        9327736  NM_001256852   USP17L10
29   chr4    8964107        9327736  NM_001256853   USP17L12
31   chr4    8964107        9327736  NM_001256854   USP17L11
34   chr4    8964107        9327736  NM_001256855   USP17L13
35   chr4    8964107        9327736  NM_001256857   USP17L17
36   chr4    8964107        9327736  NM_001256860   USP17L19
37   chr4    8964107        9327736  NM_001256861   USP17L20
38   chr4    8964107        9327736  NM_001256894   USP17L15
39   chr4   65607922       65883211     NR_033976  LOC401134,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr13   53920246       54413454     NR_047488  LINC00558
1  chr14   21753434       21869031  NM_001170629       CHD8
2  chr14   21753434       21869031     NM_007192    SUPT16H
3  chr14   21753434       21869031     NM_020366    RPGRIP1
5  chr14   21753434       21869031     NR_002916     SNORD8
6  chr14   21753434       21869031     NR_003029     SNORD9
7  chr18   61824512       61968882     NR_033881  LOC284294
8  chr18   61824512       61968882     NR_033983  LINC01538
9   chr9     522407         631940  NM_001256876      KANK1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   12829648       13114915  NM_001009611       PRAMEF4
1    chr1   12829648       13114915  NM_001010889       PRAMEF6
2    chr1   12829648       13114915  NM_001010890       PRAMEF9
3    chr1   12829648       13114915  NM_001012276       PRAMEF8
4    chr1   12829648       13114915  NM_001013407       PRAMEF5
5    chr1   12829648       13114915  NM_001013631      HNRNPCL1
6    chr1   12829648       13114915  NM_001080830      PRAMEF12
7    chr1   12829648       13114915  NM_001099850      PRAMEF18
8    chr1   12829648       13114915  NM_001100631      PRAMEF22
9    chr1   12829648       13114915  NM_001146181      HNRNPCL3
10   chr1   12829648       13114915  NM_001146344      PRAMEF11
11   chr1   12829648       13114915  NM_001294139       PRAMEF1
12   chr1   12829648       13114915  NM_001302551      HNRNPCL4
13   chr1   12829648       13114915  NM_001306072      PRAMEF26
14   chr1   12829648       13114915  NM_001310134      PRAMEF25
16   chr1   12829648       13114915     NM_023014       PRAMEF2
17  chr16   16371780       16522085  NM_001004067         NOMO3
18  chr16   16371780       16522085  NM_001282511        NPIPA8
19  chr16   16371780       16522085     NR_036140     MIR3179-1
20  chr16   16371780       16522085     NR_036141     MIR3180-1
21  chr16   16371780       16522085     NR_036142     MIR3180-2
22  chr16   16371780       16522085     NR_036447        PKD1P1
23  chr16   16371780       16522085     NR_103772  LOC100288162
24  chr16   16371780       16522085     NR_106766     MIR6511A1
25  chr16   16371780       16522085     NR_106971     MIR6511A4
26  chr16   16371780       16522085     NR_107060     MIR6770-2
27  chr16   16371780       16522085     NR_128713     MIR3670-4
28  chr20   21947335       22162425     NR_038394     LINC01432
29   chr5   13444357       13822212     NM_001369         DNAH5,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21851038       22166100  NM_001001912     OR4E2
1   chr14   21851038       22166100  NM_001005465    OR10G3
2   chr14   21851038       22166100  NM_001005466    OR10G2
3   chr14   21851038       22166100  NM_001163380     RAB2B
4   chr14   21851038       22166100  NM_001170629      CHD8
5   chr14   21851038       22166100  NM_001303523      TOX4
6   chr14   21851038       22166100  NM_001317107     OR4E1
7   chr14   21851038       22166100     NM_007192   SUPT16H
8   chr14   21851038       22166100     NM_019852    METTL3
11  chr14   21851038       22166100     NR_002916    SNORD8
12  chr14   21851038       22166100     NR_003029    SNORD9
13  chr14   21851038       22166100     NR_111966     SALL2
15   chr7    3448815        3593739     NM_152744      SDK1
16   chr7   64154015       64266626  NM_001160183    ZNF138
17   chr7   64154015       64266626  NM_001282360    ZNF107,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr22   19012182       19263170  NM_001184781      DGCR2
1  chr22   19012182       19263170  NM_001256534    SLC25A1
2  chr22   19012182       19263170     NM_001835     CLTCL1
3  chr22   19012182       19263170     NM_005315       GSC2
5  chr22   19012182       19263170     NM_022719     DGCR14
6  chr22   19012182       19263170     NM_053006      TSSK2
7  chr22   19012182       19263170     NR_024157     DGCR11
8  chr22   19012182       19263170     NR_103767  LINC01311
9  chr22   19012182       19263170     NR_110533      DGCR5,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1   87435398       87548012  NM_001134492        HS2ST1
2   chr15   28450133       29120759  NM_001282468       GOLGA8M
3   chr15   28450133       29120759     NM_004667         HERC2
4   chr15   28450133       29120759     NR_026589       WHAMMP2
5   chr15   28450133       29120759     NR_033351       GOLGA8F
7   chr15   28450133       29120759     NR_033353       GOLGA8G
9   chr15   28450133       29120759     NR_036443       HERC2P9
10  chr15   28450133       29120759     NR_036475  LOC100289656
11  chr15   28450133       29120759     NR_037599     PDCD6IPP2
12  chr15   28450133       29120759     NR_039734     MIR4509-3
14  chr15   28450133       29120759     NR_047567     GOLGA6L7P
15  chr17   48330855       48955602  NM_001144070         ABCC3
16  chr17   48330855       48955602  NM_001166131          EME1
17  chr17   48330855       48955602  NM_001168215        TMEM92
18  chr17   48330855       48955602  NM_001243877          TOB1
20  chr17   48330855       48955602  NM_001258372       SPATA20
21  chr17   48330855       48955602     NM_001267          CHAD
22  chr17   48330855       48955602  NM_001288968         ACSF2
23  chr17   48330855       48955602  NM_001330330        LUC7L3
24  chr17   48330855       48955602  NM_001330341       WFIKKN2
27  chr17   48330855       48955602     NM_016504        MRPL27
28  chr17   48330855       48955602     NM_017957          EPN3
29  chr17   48330855       48955602     NM_018346         RSAD1
30  chr17   48330855       48955602     NM_018509        LRRC59
31  chr17   48330855       48955602     NM_018896       CACNA1G
32  chr17   48330855       48955602     NM_022167         XYLT2
33  chr17   48330855       48955602     NM_032133       MYCBPAP
34  chr17   48330855       48955602     NM_052855       ANKRD40
37  chr17   48330855       48955602     NR_038439   CACNA1G-AS1
38  chr17   48330855       48955602     NR_038458      TOB1-AS1
39  chr17   48330855       48955602     NR_073199     LINC00483
40  chr17   48330855       48955602     NR_107026       MIR8059
42  chr17   48330855       48955602     NR_125805    TMEM92-AS1
43  chr17   48330855       48955602     NR_135675  LOC105371824
44   chr2   75901947       76005153  NM_001201334         GCFC2
47   chr3     736250         849540     NR_110118     LINC01266,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21870347       21985356  NM_001163380         RAB2B
1   chr14   21870347       21985356  NM_001170629          CHD8
2   chr14   21870347       21985356  NM_001303523          TOX4
3   chr14   21870347       21985356     NM_019852        METTL3
6    chr2  133532020      133664347     NM_207363        NCKAP5
7   chr22   19949594       20377491     NM_000754          COMT
10  chr22   19949594       20377491  NM_001190326         DGCR8
11  chr22   19949594       20377491  NM_001243537       CCDC188
12  chr22   19949594       20377491  NM_001278639        RANBP1
15  chr22   19949594       20377491  NM_001283116        TANGO2
18  chr22   19949594       20377491     NM_001670         ARVCF
20  chr22   19949594       20377491     NM_013373        ZDHHC8
21  chr22   19949594       20377491     NM_022727        TRMT2A
22  chr22   19949594       20377491     NM_023004         RTN4R
23  chr22   19949594       20377491     NM_033257        DGCR6L
24  chr22   19949594       20377491     NR_026919     LINC00896
25  chr22   19949594       20377491     NR_029706        MIR185
26  chr22   19949594       20377491     NR_031618       MIR1286
27  chr22   19949594       20377491     NR_031706       MIR1306
28  chr22   19949594       20377491     NR_037412       MIR3618
29  chr22   19949594       20377491     NR_038460     LOC284865
30  chr22   19949594       20377491     NR_039918       MIR4761
31  chr22   19949594       20377491     NR_106874       MIR6816
32  chr22   19949594       20377491     NR_136560       FAM230A
33  chr22   19949594       20377491     NR_136572  LOC101927859,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   89010344       89132839     NR_024397    NUTM2A-AS1
1   chr10   89010344       89132839     NR_029408     LINC00863
2   chr10   89010344       89132839     NR_075100        NUTM2D
4   chr11   89137771       89259377  NM_001143837          NOX4
10  chr12  130259300      130384375     NM_133448      TMEM132D
11  chr16   16300586       16447194  NM_001004067         NOMO3
12  chr16   16300586       16447194  NM_001079528         ABCC6
14  chr16   16300586       16447194     NR_036140     MIR3179-1
15  chr16   16300586       16447194     NR_036141     MIR3180-1
16  chr16   16300586       16447194     NR_036142     MIR3180-2
17  chr16   16300586       16447194     NR_036447        PKD1P1
18  chr16   16300586       16447194     NR_103772  LOC100288162
19  chr16   16300586       16447194     NR_106766     MIR6511A1
20  chr16   16300586       16447194     NR_107060     MIR6770-2
21  chr16   16300586       16447194     NR_128713     MIR3670-4
22  chr18   61776758       61905477     NR_027245     LINC00305
23  chr18   61776758       61905477     NR_033881     LOC284294
24  chr18   61776758       61905477     NR_033983     LINC01538
25   chr6  136882882      137082332     NM_005923        MAP3K5
26   chr6  136882882      137082332     NR_125858  LOC101928461,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12840149       13096610  NM_001009611    PRAMEF4
1    chr1   12840149       13096610  NM_001010889    PRAMEF6
2    chr1   12840149       13096610  NM_001010890    PRAMEF9
3    chr1   12840149       13096610  NM_001012276    PRAMEF8
4    chr1   12840149       13096610  NM_001013631   HNRNPCL1
5    chr1   12840149       13096610  NM_001099850   PRAMEF18
6    chr1   12840149       13096610  NM_001100631   PRAMEF22
7    chr1   12840149       13096610  NM_001146181   HNRNPCL3
8    chr1   12840149       13096610  NM_001146344   PRAMEF11
9    chr1   12840149       13096610  NM_001294139    PRAMEF1
10   chr1   12840149       13096610  NM_001302551   HNRNPCL4
11   chr1   12840149       13096610  NM_001306072   PRAMEF26
12   chr1   12840149       13096610  NM_001310134   PRAMEF25
14   chr1   12840149       13096610     NM_023014    PRAMEF2
15  chr11   79108179       79674316  NM_001098816      TENM4
16  chr11   79108179       79674316     NR_030598     MIR708
17  chr11   79108179       79674316     NR_049841    MIR5579
18  chr14   21922942       23149057  NM_001001912      OR4E2
19  chr14   21922942       23149057  NM_001005465     OR10G3
20  chr14   21922942       23149057  NM_001005466     OR10G2
21  chr14   21922942       23149057  NM_001163380      RAB2B
22  chr14   21922942       23149057  NM_001303523       TOX4
23  chr14   21922942       23149057  NM_001317107      OR4E1
24  chr14   21922942       23149057     NM_001344       DAD1
25  chr14   21922942       23149057     NM_019852     METTL3
26  chr14   21922942       23149057     NM_022060      ABHD4
28  chr14   21922942       23149057     NR_111966      SALL2
30  chr17   21266720       21431307  NM_001194958     KCNJ18
31  chr17   21266720       21431307     NM_021012     KCNJ12
32   chr2   47030366       47173090  NM_001171506      MCFD2
35   chr2   47030366       47173090  NM_001288951      TTC7A
37   chr2   47030366       47173090     NR_024452  LINC01119
38   chr2   47030366       47173090     NR_034099  LINC01118,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21837129       21958375  NM_001163380         RAB2B
1   chr14   21837129       21958375  NM_001170629          CHD8
2   chr14   21837129       21958375  NM_001303523          TOX4
3   chr14   21837129       21958375     NM_007192       SUPT16H
6   chr14   21837129       21958375     NR_002916        SNORD8
7   chr14   21837129       21958375     NR_003029        SNORD9
8   chr14   78325735       78439423  NM_001142545         ADCK1
9   chr15   28574155       29110147  NM_001282468       GOLGA8M
10  chr15   28574155       29110147     NR_026589       WHAMMP2
11  chr15   28574155       29110147     NR_033351       GOLGA8F
13  chr15   28574155       29110147     NR_033353       GOLGA8G
15  chr15   28574155       29110147     NR_036443       HERC2P9
16  chr15   28574155       29110147     NR_036475  LOC100289656
17  chr15   28574155       29110147     NR_037599     PDCD6IPP2
18  chr15   28574155       29110147     NR_039734     MIR4509-3
20  chr15   28574155       29110147     NR_047567     GOLGA6L7P
21  chr19   21446660       21663397  NM_001297560        ZNF708
24  chr19   21446660       21663397     NM_145326        ZNF493
26  chr19   21446660       21663397     NR_027130        ZNF738
27   chr5  120499813      120934436     NR_104999  LOC102467226,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   81467035       81628327  NM_001278495        NUTM2B
1   chr10   81467035       81628327     NR_029407     LOC642361
2   chr10   81467035       81628327     NR_120611    NUTM2B-AS1
5   chr15   28556363       28968105  NM_001282468       GOLGA8M
6   chr15   28556363       28968105     NM_004667         HERC2
7   chr15   28556363       28968105     NR_033351       GOLGA8F
9   chr15   28556363       28968105     NR_033353       GOLGA8G
11  chr15   28556363       28968105     NR_036443       HERC2P9
12  chr15   28556363       28968105     NR_039734     MIR4509-3
14  chr16   14792353       15027038  NM_001277323        NPIPA3
16  chr16   14792353       15027038  NM_001277324        NPIPA2
18  chr16   14792353       15027038     NM_014287         NOMO1
19  chr16   14792353       15027038     NR_023387       ABCC6P2
20  chr16   14792353       15027038     NR_036140     MIR3179-1
21  chr16   14792353       15027038     NR_036141     MIR3180-1
22  chr16   14792353       15027038     NR_036142     MIR3180-2
23  chr16   14792353       15027038     NR_103772  LOC100288162
24  chr16   14792353       15027038     NR_106970     MIR6511A3
25  chr16   14792353       15027038     NR_107060     MIR6770-2
26  chr16   14792353       15027038     NR_128713     MIR3670-4
27   chr5  119998195      120226618  NM_001300783         PRR16
30   chr9   30377657       30531665     NR_046204     LINC01242,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   78326609       78428478  NM_001142545         ADCK1
1    chr2   97184481       97630168  NM_001115016        KANSL3
2    chr2   97184481       97630168  NM_001122646       FAM178B
4    chr2   97184481       97630168  NM_001293083        FER1L5
5    chr2   97184481       97630168  NM_001319085        ARID5A
7    chr2   97184481       97630168  NM_001322354        LMAN2L
8    chr2   97184481       97630168     NM_016466       ANKRD39
10   chr2   97184481       97630168     NM_017623         CNNM3
11   chr2   97184481       97630168     NM_017789        SEMA4C
12   chr2   97184481       97630168     NM_020184         CNNM4
14   chr2   97184481       97630168     NM_144994       ANKRD23
15   chr2   97184481       97630168     NR_036074       MIR3127
17   chr2   97184481       97630168     NR_110209  LOC101927053
18   chr2   97184481       97630168     NR_135564  LOC105373496
19  chr22   19857420       19985010     NM_000754          COMT
22  chr22   19857420       19985010  NM_001282512        TXNRD2
23  chr22   19857420       19985010     NM_001670         ARVCF
26  chr22   19857420       19985010     NR_039918       MIR4761,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21730063       21977726  NM_001163380     RAB2B
1   chr14   21730063       21977726  NM_001170629      CHD8
2   chr14   21730063       21977726  NM_001303523      TOX4
3   chr14   21730063       21977726     NM_007192   SUPT16H
4   chr14   21730063       21977726     NM_019852    METTL3
5   chr14   21730063       21977726     NM_020366   RPGRIP1
7   chr14   21730063       21977726     NM_031314    HNRNPC
9   chr14   21730063       21977726     NR_002916    SNORD8
10  chr14   21730063       21977726     NR_003029    SNORD9
11  chr14   47927265       48174928  NM_001113498     MDGA2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr16   18161994       18596278  NM_001004060         NOMO2
1   chr16   18161994       18596278  NM_001282511        NPIPA8
2   chr16   18161994       18596278     NR_003569       ABCC6P1
3   chr16   18161994       18596278     NR_036140     MIR3179-1
4   chr16   18161994       18596278     NR_036142     MIR3180-2
5   chr16   18161994       18596278     NR_036144     MIR3180-3
6   chr16   18161994       18596278     NR_037442     MIR3670-1
7   chr16   18161994       18596278     NR_103772  LOC100288162
8   chr16   18161994       18596278     NR_106971     MIR6511A4
9   chr16   18161994       18596278     NR_107060     MIR6770-2
10   chr3  156041627      156208435  NM_001308217        KCNAB1
15   chr3  156041627      156208435     NR_046618    KCNAB1-AS1
16   chr4  169269663      169520399  NM_001012967        DDX60L
17   chr4  169269663      169520399  NM_001166108         PALLD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143553335      143788829  NM_001123068       PPIAL4G
1    chr1  143553335      143788829     NR_104014     LINC01138
2    chr1  143553335      143788829     NR_106967       MIR6077
3    chr1  143553335      143788829     NR_111930  LOC100132057
4    chr1  145293204      145775374  NM_001012758        NUDT17
5    chr1  145293204      145775374  NM_001039888      ANKRD34A
6    chr1  145293204      145775374  NM_001097612        GPR89A
7    chr1  145293204      145775374  NM_001184795        PEX11B
8    chr1  145293204      145775374  NM_001201325         PDZK1
9    chr1  145293204      145775374  NM_001277444         NBPF9
10   chr1  145293204      145775374  NM_001278267        NBPF20
11   chr1  145293204      145775374  NM_001280799       ANKRD35
12   chr1  145293204      145775374  NM_001302371        NBPF10
13   chr1  145293204      145775374  NM_001303040        ITGA10
14   chr1  145293204      145775374  NM_001303456        POLR3C
15   chr1  145293204      145775374  NM_001313972         TXNIP
17   chr1  145293204      145775374     NM_005105         RBM8A
18   chr1  145293204      145775374     NM_006099         PIAS3
21   chr1  145293204      145775374     NM_007053         CD160
22   chr1  145293204      145775374     NM_014455        RNF115
23   chr1  145293204      145775374     NM_032305       POLR3GL
24   chr1  145293204      145775374     NM_145277          HFE2
25   chr1  145293204      145775374     NM_153713         LIX1L
26   chr1  145293204      145775374     NR_002328        GNRHR2
30   chr1  145293204      145775374     NR_104217       NBPF25P
31   chr1  145293204      145775374     NR_106794       MIR6736
32   chr1  145293204      145775374     NR_125967  LOC101928979
33  chr10    7131286        7570398  NM_001018039        SFMBT2
35  chr10    7131286        7570398     NR_132972      SNORD129
36   chr4  190522764      191864544  NM_001286820          FRG2
37   chr4  190522764      191864544     NM_004477          FRG1
38   chr4  190522764      191864544     NR_121644          DBET
39   chr4  190522764      191864544     NR_121679     LINC01262
40   chr4  190522764      191864544     NR_132380     LINC01596
41   chr4  190522764      191864544     NR_135513  LOC105379514
42   chr9    9802886       10183692     NM_002839         PTPRD
43   chr9    9802886       10183692     NR_135135  LOC105375972,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr11   89128449       89282459  NM_001143837       NOX4
6   chr13   63113309       64119506     NR_047029  LINC00448
9   chr13   63113309       64119506     NR_126409  LINC00376
10  chr14   21850315       23010808  NM_001001912      OR4E2
11  chr14   21850315       23010808  NM_001005465     OR10G3
12  chr14   21850315       23010808  NM_001005466     OR10G2
13  chr14   21850315       23010808  NM_001163380      RAB2B
14  chr14   21850315       23010808  NM_001170629       CHD8
15  chr14   21850315       23010808  NM_001303523       TOX4
16  chr14   21850315       23010808  NM_001317107      OR4E1
17  chr14   21850315       23010808     NM_007192    SUPT16H
18  chr14   21850315       23010808     NM_019852     METTL3
21  chr14   21850315       23010808     NR_002916     SNORD8
22  chr14   21850315       23010808     NR_003029     SNORD9
23  chr14   21850315       23010808     NR_111966      SALL2
25  chr15   28239199       28552826     NM_000275       OCA2
27  chr15   28239199       28552826     NM_004667      HERC2
28   chr2   97204786       97315628  NM_001115016     KANSL3
29   chr2   97204786       97315628  NM_001293083     FER1L5
30   chr2   97204786       97315628  NM_001319085     ARID5A,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  107971410      109382606  NM_001010883       FAM102B
1    chr1  107971410      109382606  NM_001079874          VAV3
2    chr1  107971410      109382606  NM_001102592        HENMT1
3    chr1  107971410      109382606  NM_001113228         NTNG1
4    chr1  107971410      109382606  NM_001143988         NBPF6
5    chr1  107971410      109382606  NM_001143989         NBPF4
6    chr1  107971410      109382606  NM_001144937         FNDC7
9    chr1  107971410      109382606     NM_007269        STXBP3
10   chr1  107971410      109382606     NM_013386      SLC25A24
12   chr1  107971410      109382606     NM_018061       PRPF38B
14   chr1  107971410      109382606     NM_152763        AKNAD1
17   chr1  107971410      109382606     NR_046653      VAV3-AS1
19   chr1  107971410      109382606     NR_107006       MIR7852
20  chr16   16394566       16527725  NM_001282511        NPIPA8
21  chr16   16394566       16527725     NR_036141     MIR3180-1
22  chr16   16394566       16527725     NR_036142     MIR3180-2
23  chr16   16394566       16527725     NR_036447        PKD1P1
24  chr16   16394566       16527725     NR_103772  LOC100288162
25  chr16   16394566       16527725     NR_106766     MIR6511A1
26  chr16   16394566       16527725     NR_106971     MIR6511A4
27  chr16   16394566       16527725     NR_107060     MIR6770-2
28  chr16   16394566       16527725     NR_128713     MIR3670-4
29  chr20   14871454       15032746     NM_080676       MACROD2
30  chr20   14871454       15032746     NR_037841   MACROD2-AS1
32   chr7   64211130       64342056  NM_001160183        ZNF138
34   chr9   38962735       39163475     NM_033655       CNTNAP3,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21820759       21945834  NM_001163380     RAB2B
1   chr14   21820759       21945834  NM_001170629      CHD8
2   chr14   21820759       21945834  NM_001303523      TOX4
3   chr14   21820759       21945834     NM_007192   SUPT16H
6   chr14   21820759       21945834     NR_002916    SNORD8
7   chr14   21820759       21945834     NR_003029    SNORD9
8   chr16    6730041        6852214  NM_001142334    RBFOX1
11   chr3   60386105       60494198  NM_001320899      FHIT
12   chr9   28571241       29239216  NM_001258282    LINGO2
14   chr9   28571241       29239216     NR_030597    MIR876
15   chr9   28571241       29239216     NR_030618    MIR873,     chrom  cnv_start  cnv_terminate       tx_name    gene_name
0   chr14   21865821       22072058  NM_001005465       OR10G3
1   chr14   21865821       22072058  NM_001163380        RAB2B
2   chr14   21865821       22072058  NM_001170629         CHD8
3   chr14   21865821       22072058  NM_001303523         TOX4
4   chr14   21865821       22072058     NM_019852       METTL3
7   chr14   21865821       22072058     NR_111966        SALL2
9   chr16   76811793       76953095     NR_039870      MIR4719
10  chr20   14491093       14674282     NM_080676      MACROD2
11  chr20   14491093       14674282     NR_104193  MACROD2-IT1
12  chr20   14794620       15088521     NM_080676      MACROD2
13  chr20   14794620       15088521     NR_037841  MACROD2-AS1
15   chr3  145806619      146546740     NM_000935        PLOD2
16   chr3  145806619      146546740  NM_001085420       PLSCR5
17   chr3  145806619      146546740  NM_001128304       PLSCR4
19   chr3  145806619      146546740  NM_001199978       PLSCR2
22   chr3  145806619      146546740     NM_021105       PLSCR1
23   chr7  110525305      110926804  NM_001099658        LRRN3
24   chr7  110525305      110926804  NM_001244606       IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  220039877      220169594     NM_004446          EPRS
1    chr1  220039877      220169594     NR_002753       RNU5F-1
2    chr1  220039877      220169594     NR_046437      SLC30A10
3   chr14   21794423       21945839  NM_001163380         RAB2B
4   chr14   21794423       21945839  NM_001170629          CHD8
5   chr14   21794423       21945839  NM_001303523          TOX4
6   chr14   21794423       21945839     NM_007192       SUPT16H
7   chr14   21794423       21945839     NM_020366       RPGRIP1
10  chr14   21794423       21945839     NR_002916        SNORD8
11  chr14   21794423       21945839     NR_003029        SNORD9
12   chr2  216227761      216415500  NM_001306129           FN1
15   chr2  216227761      216415500     NR_110607  LOC102724849
16   chr4   73014506       73372260     NM_014243       ADAMTS3
17   chr5  151307114      151679588     NR_109876    CTB-12O2.1,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr22   19010786       19157151  NM_001184781     DGCR2
1  chr22   19010786       19157151     NM_005315      GSC2
2  chr22   19010786       19157151     NM_022719    DGCR14
3  chr22   19010786       19157151     NM_053006     TSSK2
4  chr22   19010786       19157151     NR_024157    DGCR11
5  chr22   19010786       19157151     NR_026651    DGCR10
6  chr22   19010786       19157151     NR_110533     DGCR5
7   chr9   10034746       10237261     NM_002839     PTPRD,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0    chr1   12774366       12896200  NM_001080830  PRAMEF12
1    chr1   12774366       12896200  NM_001103170   AADACL3
2    chr1   12774366       12896200  NM_001146344  PRAMEF11
3    chr1   12774366       12896200  NM_001294139   PRAMEF1
5    chr1   12774366       12896200     NM_152290  C1orf158
6   chr14   21822524       21993178  NM_001163380     RAB2B
7   chr14   21822524       21993178  NM_001170629      CHD8
8   chr14   21822524       21993178  NM_001303523      TOX4
9   chr14   21822524       21993178     NM_007192   SUPT16H
10  chr14   21822524       21993178     NM_019852    METTL3
13  chr14   21822524       21993178     NR_002916    SNORD8
14  chr14   21822524       21993178     NR_003029    SNORD9
15  chr14   21822524       21993178     NR_111966     SALL2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21680797       21822257     NM_007192       SUPT16H
1   chr14   21680797       21822257     NM_020366       RPGRIP1
2   chr14   21680797       21822257     NM_031314        HNRNPC
3   chr15   28663234       28765737     NR_033351       GOLGA8F
4   chr15   28663234       28765737     NR_033353       GOLGA8G
5   chr15   28663234       28765737     NR_039734     MIR4509-3
7    chr5   23996615       25764784  NM_001317222         CDH10
9    chr5   23996615       25764784     NR_037896     LOC340107
10   chr5   23996615       25764784     NR_131245       C5orf17
11   chr5   23996615       25764784     NR_136209  LOC105374693
12   chr7   64054390       64216044  NM_001282360        ZNF107
13   chr7   64054390       64216044     NR_077227  LOC100128885
15   chr7   64054390       64216044     NR_106898       MIR6839,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0   chr14   21733428       21885530  NM_001170629       CHD8
1   chr14   21733428       21885530     NM_007192    SUPT16H
2   chr14   21733428       21885530     NM_020366    RPGRIP1
4   chr14   21733428       21885530     NM_031314     HNRNPC
5   chr14   21733428       21885530     NR_002916     SNORD8
6   chr14   21733428       21885530     NR_003029     SNORD9
7   chr15   30264186       30380879  NM_001282472    GOLGA8J
8   chr16   68572174       68896724  NM_001305204      ZFP90
10  chr16   68572174       68896724  NM_001317184       CDH1
11  chr16   68572174       68896724  NM_001317195       CDH3
12  chr16   68572174       68896724     NM_024562     TANGO6
13  chr16   68572174       68896724     NR_106988  MIR7641-2
14   chr2   62197799       62350259  NM_001321781     COMMD1
16  chr20   14639564       14766248     NM_080676    MACROD2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   19649171       20730330  NM_001142308        MALRD1
1   chr10   19649171       20730330  NM_001282736        PLXDC2
2   chr10   19649171       20730330     NR_120646  LOC101928834
3   chr11    4162404        4266071     NR_047550  LOC100506082
4   chr11  131390575      132819074  NM_001012393         OPCML
5   chr11  131390575      132819074  NM_001048209           NTM
10  chr11  131390575      132819074     NR_046820        NTM-IT
11  chr11  131390575      132819074     NR_110140  LOC101929653
12  chr11  131390575      132819074     NR_126159       NTM-AS1
13  chr15   30308480       30469903  NM_001282472       GOLGA8J
14  chr15   30308480       30469903     NR_026859        ULK4P3
15  chr15   30308480       30469903     NR_033933       GOLGA8T
16   chr2   84692256       84840778     NM_001370         DNAH6
17  chr20   14477079       14598823     NM_080676       MACROD2
18  chr20   14477079       14598823     NR_104193   MACROD2-IT1
19   chr5   22772534       22889205     NM_004061         CDH12
20   chr9   39083510       39516372  NM_001085452     SPATA31A1
21   chr9   39083510       39516372     NM_033655       CNTNAP3
22   chr9   39083510       39516372     NR_003528       ZNF658B
23   chr9   39083510       39516372     NR_026803       FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  193319824      193520302     NR_125789     LINC01031
1   chr12    1018480        1142465  NM_001297419         RAD52
5   chr12    1018480        1142465  NM_001301248          ERC1
6   chr12    1018480        1142465     NM_018979          WNK1
8   chr14   21835864       21941557  NM_001163380         RAB2B
9   chr14   21835864       21941557  NM_001170629          CHD8
10  chr14   21835864       21941557     NM_007192       SUPT16H
13  chr14   21835864       21941557     NR_002916        SNORD8
14  chr14   21835864       21941557     NR_003029        SNORD9
15  chr20   55564811       55887086     NM_001719          BMP7
16  chr20   55564811       55887086     NR_110631      BMP7-AS1
17  chr21   22396757       24071184     NM_004540         NCAM2
18  chr21   22396757       24071184     NR_038400     LINC00308
19  chr21   22396757       24071184     NR_038872     LINC00317
20  chr21   22396757       24071184     NR_109958     LINC01425
21  chr21   22396757       24071184     NR_109959  LOC101927843
22   chr6  162612468      163840810  NM_001080378         PACRG
24   chr6  162612468      163840810     NM_006775           QKI
25   chr6  162612468      163840810     NM_013988         PARK2
26   chr6  162612468      163840810     NR_028390     PACRG-AS1
27   chr6  162612468      163840810     NR_033862  DKFZp451B082
28   chr6  162612468      163840810     NR_037593          CAHM
29   chr6  162612468      163840810     NR_110871     PACRG-AS2
31   chr6  162612468      163840810     NR_122120     PACRG-AS3,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11   48349686       49015886  NM_001005512        OR4A47
1   chr11   48349686       49015886  NM_001005513        OR4C45
2   chr14   21831185       21949628  NM_001163380         RAB2B
3   chr14   21831185       21949628  NM_001170629          CHD8
4   chr14   21831185       21949628  NM_001303523          TOX4
5   chr14   21831185       21949628     NM_007192       SUPT16H
8   chr14   21831185       21949628     NR_002916        SNORD8
9   chr14   21831185       21949628     NR_003029        SNORD9
10   chr2   49080018       49189750     NM_181446          FSHR
11   chr8  135647256      135961265  NM_001174158          ZFAT
13   chr8  135647256      135961265     NR_029599        MIR30D
14   chr8  135647256      135961265     NR_029666        MIR30B
15   chr8  135647256      135961265     NR_125427  LOC101927845
16   chr8  135647256      135961265     NR_126028    NCRNA00250
17   chr9   41559650       41671080     NR_003528       ZNF658B,   chrom  cnv_start  cnv_terminate       tx_name     gene_name
0  chr2  186509838      186813273     NM_173651         FSIP2
1  chr2  186509838      186813273     NR_110214  LOC101927196
4  chr2  186509838      186813273     NR_144453     FSIP2-AS1
6  chr3   60137644       60737847  NM_001320899          FHIT
7  chr3   60137644       60737847     NR_128708      MIR548BB
8  chr4  121619393      121794817     NM_018699         PRDM5
9  chr7   88237176       88414757     NM_181646       ZNF804B,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr10   67865353       68081241  NM_001127384    CTNNA3
2   chr14   21810141       22019045  NM_001163380     RAB2B
3   chr14   21810141       22019045  NM_001170629      CHD8
4   chr14   21810141       22019045  NM_001303523      TOX4
5   chr14   21810141       22019045     NM_007192   SUPT16H
6   chr14   21810141       22019045     NM_019852    METTL3
7   chr14   21810141       22019045     NM_020366   RPGRIP1
10  chr14   21810141       22019045     NR_002916    SNORD8
11  chr14   21810141       22019045     NR_003029    SNORD9
12  chr14   21810141       22019045     NR_111966     SALL2
14   chr2   35686255       35831832     NR_039629  MIR548AD,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10  120517940      121037209  NM_001303113        FAM45A
1   chr10  120517940      121037209     NM_003750         EIF3A
2   chr10  120517940      121037209     NM_005308          GRK5
3   chr10  120517940      121037209     NM_199461        NANOS1
4   chr10  120517940      121037209     NR_002917       SNORA19
5   chr10  120517940      121037209     NR_027141       FAM45BP
6   chr10  120517940      121037209     NR_110305         SFXN4
7   chr10  120517940      121037209     NR_126103         PRDX3
8   chr14   21792110       22080819  NM_001005465        OR10G3
9   chr14   21792110       22080819  NM_001163380         RAB2B
10  chr14   21792110       22080819  NM_001170629          CHD8
11  chr14   21792110       22080819  NM_001303523          TOX4
12  chr14   21792110       22080819     NM_007192       SUPT16H
13  chr14   21792110       22080819     NM_019852        METTL3
14  chr14   21792110       22080819     NM_020366       RPGRIP1
17  chr14   21792110       22080819     NR_002916        SNORD8
18  chr14   21792110       22080819     NR_003029        SNORD9
19  chr14   21792110       22080819     NR_111966         SALL2
21  chr17    5553635        5734552     NR_040000     LOC339166
22   chr2  131988811      132334985  NM_001077637        WTH3DI
23   chr2  131988811      132334985  NM_001083538         POTEE
24   chr2  131988811      132334985  NM_001085365         MZT2A
25   chr2  131988811      132334985  NM_001258304       CCDC74A
26   chr2  131988811      132334985     NM_080386        TUBA3D
27   chr2  131988811      132334985     NR_002826       NOC2LP2
28   chr2  131988811      132334985     NR_026922     LOC150776
29   chr2  131988811      132334985     NR_030728     LOC440910
30   chr2  131988811      132334985     NR_036499     LINC01120
31   chr2  131988811      132334985     NR_039945       MIR4784
32   chr2  153030894      153143044     NM_005843         STAM2
33   chr9   67225005       67403448     NR_002817        AQP7P1
34   chr9   67225005       67403448     NR_136300  LOC102724580,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143079456      144151715  NM_001123068       PPIAL4G
1    chr1  143079456      144151715  NM_001278267        NBPF20
2    chr1  143079456      144151715  NM_001287385        FAM72C
3    chr1  143079456      144151715  NM_001345942        FAM72D
7    chr1  143079456      144151715     NR_104014     LINC01138
8    chr1  143079456      144151715     NR_106967       MIR6077
9    chr1  143079456      144151715     NR_110761  LOC102723769
10   chr1  143079456      144151715     NR_111930  LOC100132057
12  chr10   67712149       67979218  NM_001127384        CTNNA3
14   chr6   79389656       79588419  NM_001010844      IRAK1BP1
15   chr7   21431687       21580422  NM_001326542           SP4
16   chr7   21431687       21580422     NR_031594       MIR1183
18   chr9   30279442       30400743     NR_046204     LINC01242,    chrom  cnv_start  cnv_terminate       tx_name gene_name
0  chr11   48366768       48588549  NM_001005512    OR4A47
1  chr11   48366768       48588549  NM_001005513    OR4C45
2  chr14   21686346       21892498  NM_001170629      CHD8
3  chr14   21686346       21892498     NM_007192   SUPT16H
4  chr14   21686346       21892498     NM_020366   RPGRIP1
6  chr14   21686346       21892498     NM_031314    HNRNPC
7  chr14   21686346       21892498     NR_002916    SNORD8
8  chr14   21686346       21892498     NR_003029    SNORD9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr15   30293062       30589793  NM_001282472       GOLGA8J
1   chr15   30293062       30589793     NR_026771  DKFZP434L187
2   chr15   30293062       30589793     NR_026859        ULK4P3
3   chr15   30293062       30589793     NR_033933       GOLGA8T
4   chr16   18300439       19704211  NM_001004060         NOMO2
5   chr16   18300439       19704211     NM_001019        RPS15A
6   chr16   18300439       19704211  NM_001105249          TMC5
7   chr16   18300439       19704211  NM_001160364          TMC7
8   chr16   18300439       19704211  NM_001190983          COQ7
9   chr16   18300439       19704211  NM_001199022        CCP110
10  chr16   18300439       19704211  NM_001256720       CLEC19A
12  chr16   18300439       19704211  NM_001282511        NPIPA8
14  chr16   18300439       19704211  NM_001308157         SYT17
16  chr16   18300439       19704211  NM_001313858       ARL6IP1
17  chr16   18300439       19704211  NM_001324066          GDE1
20  chr16   18300439       19704211     NM_015092          SMG1
25  chr16   18300439       19704211     NM_020314      C16orf62
27  chr16   18300439       19704211     NR_003569       ABCC6P1
28  chr16   18300439       19704211     NR_028028      ITPRIPL2
29  chr16   18300439       19704211     NR_036140     MIR3179-1
30  chr16   18300439       19704211     NR_036142     MIR3180-2
31  chr16   18300439       19704211     NR_036144     MIR3180-3
32  chr16   18300439       19704211     NR_037442     MIR3670-1
33  chr16   18300439       19704211     NR_103772  LOC100288162
34  chr16   18300439       19704211     NR_106971     MIR6511A4
35  chr16   18300439       19704211     NR_107060     MIR6770-2
36  chr16   18300439       19704211     NR_119379  LOC102723385
38  chr20   14657577       14963471     NM_080676       MACROD2
39  chr20   14657577       14963471     NR_037841   MACROD2-AS1
41   chr7  110652384      110861308  NM_001099658         LRRN3
42   chr7  110652384      110861308  NM_001244606        IMMP2L
44   chr7  110670350      111021342  NM_001099658         LRRN3
45   chr7  110670350      111021342  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11    4844594        5300599     NM_000184          HBG2
1   chr11    4844594        5300599     NM_000518           HBB
2   chr11    4844594        5300599     NM_000519           HBD
3   chr11    4844594        5300599     NM_000559          HBG1
4   chr11    4844594        5300599  NM_001001916        OR52J3
5   chr11    4844594        5300599  NM_001004748        OR51A2
6   chr11    4844594        5300599  NM_001004749        OR51A7
7   chr11    4844594        5300599  NM_001004755        OR51L1
8   chr11    4844594        5300599  NM_001004758        OR51S1
9   chr11    4844594        5300599  NM_001004759        OR51T1
10  chr11    4844594        5300599  NM_001004760        OR51V1
11  chr11    4844594        5300599  NM_001005160        OR52A5
12  chr11    4844594        5300599  NM_001005164        OR52E2
13  chr11    4844594        5300599  NM_001005237        OR51G1
14  chr11    4844594        5300599  NM_001005238        OR51G2
15  chr11    4844594        5300599  NM_001005329        OR51A4
16  chr11    4844594        5300599     NM_005330          HBE1
17  chr11    4844594        5300599     NM_012375        OR52A1
18  chr11    4844594        5300599     NM_021801         MMP26
19  chr11    4844594        5300599     NR_001589         HBBP1
20  chr11    4844594        5300599     NR_121648         BGLT3
21  chr15   52919187       53202158  NM_001286495       FAM214A
22  chr15   52919187       53202158     NM_004498       ONECUT1
25  chr16   14816785       15061172  NM_001277323        NPIPA3
27  chr16   14816785       15061172  NM_001277324        NPIPA2
29  chr16   14816785       15061172     NM_006985        NPIPA1
30  chr16   14816785       15061172     NM_014287         NOMO1
31  chr16   14816785       15061172     NR_023387       ABCC6P2
32  chr16   14816785       15061172     NR_036140     MIR3179-1
33  chr16   14816785       15061172     NR_036141     MIR3180-1
34  chr16   14816785       15061172     NR_036142     MIR3180-2
35  chr16   14816785       15061172     NR_103772  LOC100288162
36  chr16   14816785       15061172     NR_106970     MIR6511A3
37  chr16   14816785       15061172     NR_107060     MIR6770-2
38  chr16   14816785       15061172     NR_128713     MIR3670-4
39   chr4   71394129       71512220  NM_001286731          AMTN
40   chr4   71394129       71512220     NM_016519          AMBN
41   chr4   71394129       71512220     NM_031889          ENAM
42   chr7  110720259      110995571  NM_001099658         LRRN3
43   chr7  110720259      110995571  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  143560983      143830198  NM_001123068       PPIAL4G
1    chr1  143560983      143830198     NR_104014     LINC01138
2    chr1  143560983      143830198     NR_106967       MIR6077
3    chr1  143560983      143830198     NR_111930  LOC100132057
4    chr1  244978477      245401319  NM_001143943        EFCAB2
6    chr1  244978477      245401319  NM_001312871         COX20
8    chr1  244978477      245401319     NM_004501        HNRNPU
9    chr1  244978477      245401319     NM_018012        KIF26B
12   chr1  244978477      245401319     NR_111907  LOC101928068
13   chr1  244978477      245401319     NR_132782      SNORA100
14  chr12   72607755       72761121     NM_013381         TRHDE
15  chr12   72607755       72761121     NR_026836     TRHDE-AS1
17  chr15   30220888       30718448  NM_001282472       GOLGA8J
18  chr15   30220888       30718448  NM_001282484       GOLGA8R
19  chr15   30220888       30718448  NM_001301025          TJP1
20  chr15   30220888       30718448     NM_139320      CHRFAM7A
21  chr15   30220888       30718448     NR_026771  DKFZP434L187
22  chr15   30220888       30718448     NR_026859        ULK4P3
23  chr15   30220888       30718448     NR_033933       GOLGA8T
24  chr20   14911631       15227557  NM_001033087       MACROD2
26   chr4  128448497      128559038     NM_015693          INTU
27   chr6  162873665      163018869     NM_013988         PARK2,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr11  131440025      131695875  NM_001048209           NTM
1   chr11  131440025      131695875     NR_126159       NTM-AS1
2   chr15   30273926       30472176  NM_001282472       GOLGA8J
3   chr15   30273926       30472176     NR_026859        ULK4P3
4   chr15   30273926       30472176     NR_033933       GOLGA8T
5   chr16   18403388       18778747  NM_001004060         NOMO2
6   chr16   18403388       18778747  NM_001282511        NPIPA8
7   chr16   18403388       18778747     NR_003569       ABCC6P1
8   chr16   18403388       18778747     NR_036140     MIR3179-1
9   chr16   18403388       18778747     NR_036142     MIR3180-2
10  chr16   18403388       18778747     NR_036144     MIR3180-3
11  chr16   18403388       18778747     NR_037442     MIR3670-1
12  chr16   18403388       18778747     NR_103772  LOC100288162
13  chr16   18403388       18778747     NR_106971     MIR6511A4
14  chr16   18403388       18778747     NR_107060     MIR6770-2
15   chr4  190300029      191166914  NM_001286820          FRG2
16   chr4  190300029      191166914     NM_004477          FRG1
17   chr4  190300029      191166914     NR_121644          DBET
18   chr4  190300029      191166914     NR_121679     LINC01262
19   chr4  190300029      191166914     NR_132380     LINC01596
20   chr4  190300029      191166914     NR_135513  LOC105379514
21   chr9   28587737       28935507  NM_001258282        LINGO2
23   chr9   28587737       28935507     NR_030597        MIR876
24   chr9   28587737       28935507     NR_030618        MIR873,     chrom  cnv_start  cnv_terminate       tx_name  gene_name
0    chr1   12824638       12972458  NM_001009611    PRAMEF4
1    chr1   12824638       12972458  NM_001013631   HNRNPCL1
2    chr1   12824638       12972458  NM_001080830   PRAMEF12
3    chr1   12824638       12972458  NM_001146181   HNRNPCL3
4    chr1   12824638       12972458  NM_001146344   PRAMEF11
5    chr1   12824638       12972458  NM_001294139    PRAMEF1
6    chr1   12824638       12972458  NM_001302551   HNRNPCL4
8    chr1   12824638       12972458     NM_023014    PRAMEF2
9   chr11     737448         950559     NM_001004      RPLP2
10  chr11     737448         950559  NM_001025234     TSPAN4
13  chr11     737448         950559  NM_001039490      CD151
14  chr11     737448         950559  NM_001142675      CHID1
15  chr11     737448         950559  NM_001191060   SLC25A22
17  chr11     737448         950559  NM_001286606    CRACR2B
18  chr11     737448         950559  NM_001293167      PANO1
19  chr11     737448         950559  NM_001318824      PDDC1
21  chr11     737448         950559     NM_006755     TALDO1
22  chr11     737448         950559     NM_012305      AP2A2
23  chr11     737448         950559     NM_016564      CEND1
24  chr11     737448         950559     NM_020376     PNPLA2
25  chr11     737448         950559     NM_021128     POLR2L
28  chr11     737448         950559     NM_145886      PIDD1
29  chr11     737448         950559     NR_002585    SNORA52
30  chr11     737448         950559     NR_126342  LOC171391
31  chr14   21779383       22103933  NM_001005465     OR10G3
32  chr14   21779383       22103933  NM_001005466     OR10G2
33  chr14   21779383       22103933  NM_001163380      RAB2B
34  chr14   21779383       22103933  NM_001170629       CHD8
35  chr14   21779383       22103933  NM_001303523       TOX4
36  chr14   21779383       22103933     NM_007192    SUPT16H
37  chr14   21779383       22103933     NM_019852     METTL3
38  chr14   21779383       22103933     NM_020366    RPGRIP1
41  chr14   21779383       22103933     NR_002916     SNORD8
42  chr14   21779383       22103933     NR_003029     SNORD9
43  chr14   21779383       22103933     NR_111966      SALL2
45   chr4  128792099      128898852  NM_001190801       PLK4
46   chr4  128792099      128898852  NM_001319305     ABHD18
48   chr4  128792099      128898852     NM_152778      MFSD8
49   chr5   17637454       17838724     NR_134286  LOC646241,    chrom  cnv_start  cnv_terminate       tx_name  gene_name
0  chr14   26993929       27140181     NM_002515      NOVA1
2  chr22   17244914       17467570  NM_001037814       GAB4
3  chr22   17244914       17467570     NM_175878       XKR3
4  chr22   17244914       17467570     NR_003607    HSFY1P1
5   chr4   71376529       71489981  NM_001286731       AMTN
6   chr4   71376529       71489981     NM_016519       AMBN
7   chr9   39049738       39372013  NM_001085452  SPATA31A1
8   chr9   39049738       39372013     NM_033655    CNTNAP3
9   chr9   39049738       39372013     NR_026803    FAM74A1,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21824777       22035387  NM_001163380         RAB2B
1   chr14   21824777       22035387  NM_001170629          CHD8
2   chr14   21824777       22035387  NM_001303523          TOX4
3   chr14   21824777       22035387     NM_007192       SUPT16H
4   chr14   21824777       22035387     NM_019852        METTL3
7   chr14   21824777       22035387     NR_002916        SNORD8
8   chr14   21824777       22035387     NR_003029        SNORD9
9   chr14   21824777       22035387     NR_111966         SALL2
11  chr16   16459084       16898665  NM_001282511        NPIPA8
12  chr16   16459084       16898665     NR_106971     MIR6511A4
13  chr17   78243904       78347756  NM_001256071        RNF213
15  chr17   78243904       78347756     NR_029376  LOC100294362
16  chr19   21897575       22054893  NM_001256650         ZNF43
18  chr19   21897575       22054893     NM_173531        ZNF100
19  chr19   21897575       22054893     NR_024523     LOC641367
20   chr6   65538782       65859635  NM_001142800           EYS
21   chr7    4263479        4553355  NM_001079653          SDK1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21776155       21888766  NM_001170629      CHD8
1   chr14   21776155       21888766     NM_007192   SUPT16H
2   chr14   21776155       21888766     NM_020366   RPGRIP1
4   chr14   21776155       21888766     NR_002916    SNORD8
5   chr14   21776155       21888766     NR_003029    SNORD9
6   chr14   21900719       22323728  NM_001001912     OR4E2
7   chr14   21900719       22323728  NM_001005465    OR10G3
8   chr14   21900719       22323728  NM_001005466    OR10G2
9   chr14   21900719       22323728  NM_001163380     RAB2B
10  chr14   21900719       22323728  NM_001303523      TOX4
11  chr14   21900719       22323728  NM_001317107     OR4E1
12  chr14   21900719       22323728     NM_019852    METTL3
13  chr14   21900719       22323728     NM_020920      CHD8
15  chr14   21900719       22323728     NR_111966     SALL2
17   chr2   25464925       25593484  NM_001320892    DNMT3A
23   chr2   25464925       25593484     NR_031570   MIR1301,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr13   88029015       88447339     NM_015567       SLITRK5
1   chr13   88029015       88447339     NR_033829     MIR4500HG
2   chr13   88029015       88447339     NR_039722       MIR4500
3   chr14   21932371       22064923  NM_001005465        OR10G3
4   chr14   21932371       22064923  NM_001163380         RAB2B
5   chr14   21932371       22064923  NM_001303523          TOX4
6   chr14   21932371       22064923     NM_019852        METTL3
8   chr14   21932371       22064923     NR_111966         SALL2
10   chr7   83844853       84283965     NR_110079  LOC101927378
12   chr7  110769048      110872558  NM_001244606        IMMP2L,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr14   21825082       22080932  NM_001005465        OR10G3
1   chr14   21825082       22080932  NM_001163380         RAB2B
2   chr14   21825082       22080932  NM_001170629          CHD8
3   chr14   21825082       22080932  NM_001303523          TOX4
4   chr14   21825082       22080932     NM_007192       SUPT16H
5   chr14   21825082       22080932     NM_019852        METTL3
8   chr14   21825082       22080932     NR_002916        SNORD8
9   chr14   21825082       22080932     NR_003029        SNORD9
10  chr14   21825082       22080932     NR_111966         SALL2
12   chr2   34181669       34294283     NR_126403     LINC01317
13   chr2   34181669       34294283     NR_132381     LINC01318
14   chr3    1142645        1651691  NM_001289081         CNTN6
15   chr6  136939360      138191192     NM_000288          PEX7
16   chr6  136939360      138191192     NM_000416        IFNGR1
17   chr6  136939360      138191192  NM_001008783       SLC35D3
18   chr6  136939360      138191192  NM_001270507       TNFAIP3
19   chr6  136939360      138191192  NM_001278722        IL20RA
21   chr6  136939360      138191192     NM_005923        MAP3K5
22   chr6  136939360      138191192     NM_052962       IL22RA2
23   chr6  136939360      138191192     NM_175747         OLIG3
24   chr6  136939360      138191192     NR_027994         NHEG1
25   chr6  136939360      138191192     NR_049793  LOC100130476
26   chr6  136939360      138191192     NR_121618  LOC100507406
27   chr6  136939360      138191192     NR_125858  LOC101928461
28   chr6  136939360      138191192     NR_125867  LOC102723649
29   chr6  136939360      138191192     NR_134635  LOC101928429
30   chr7   21403938       22181859  NM_001277115        DNAH11
31   chr7   21403938       22181859  NM_001326542           SP4
32   chr7   21403938       22181859     NM_012294       RAPGEF5
33   chr7   21403938       22181859     NM_018719        CDCA7L
34   chr7   21403938       22181859     NR_031594       MIR1183,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0   chr10   83981083       84112941  NM_001010848          NRG3
2   chr10   83981083       84112941     NR_120666      NRG3-AS1
3   chr12   10570485       10675604  NM_001304448         KLRC1
5   chr12   10570485       10675604     NM_002260         KLRC2
6   chr12   10570485       10675604     NM_002261         KLRC3
9   chr12   71480004       71673899     NM_004616        TSPAN8
10  chr15   28746337       29083427  NM_001282468       GOLGA8M
11  chr15   28746337       29083427     NR_026589       WHAMMP2
12  chr15   28746337       29083427     NR_033351       GOLGA8F
13  chr15   28746337       29083427     NR_033353       GOLGA8G
14  chr15   28746337       29083427     NR_036443       HERC2P9
15  chr15   28746337       29083427     NR_036475  LOC100289656
16  chr15   28746337       29083427     NR_037599     PDCD6IPP2
17   chr2  242409688      242752633  NM_001164356         THAP4
18   chr2  242409688      242752633  NM_001165031         DTYMK
19   chr2  242409688      242752633  NM_001167601          NEU4
21   chr2  242409688      242752633  NM_001271978         STK25
24   chr2  242409688      242752633  NM_001287249        D2HGDH
25   chr2  242409688      242752633  NM_001330161          ING5
27   chr2  242409688      242752633     NM_014808         FARP2
29   chr2  242409688      242752633     NM_022134       GAL3ST2
31   chr2  242409688      242752633     NM_032515           BOK
32   chr2  242409688      242752633     NM_178326         ATG4B
33   chr2  242409688      242752633     NR_033346       BOK-AS1
34   chr2  242409688      242752633     NR_036083       MIR3133
35  chr20   14904984       15413646  NM_001033087       MACROD2
37  chr20   14904984       15413646     NR_037841   MACROD2-AS1,     chrom  cnv_start  cnv_terminate       tx_name gene_name
0   chr14   21830916       22041974  NM_001005465    OR10G3
1   chr14   21830916       22041974  NM_001163380     RAB2B
2   chr14   21830916       22041974  NM_001170629      CHD8
3   chr14   21830916       22041974  NM_001303523      TOX4
4   chr14   21830916       22041974     NM_007192   SUPT16H
5   chr14   21830916       22041974     NM_019852    METTL3
8   chr14   21830916       22041974     NR_002916    SNORD8
9   chr14   21830916       22041974     NR_003029    SNORD9
10  chr14   21830916       22041974     NR_111966     SALL2
12  chr20   14703227       14809358     NM_080676   MACROD2
13   chr5   26894289       27045265     NM_016279      CDH9,     chrom  cnv_start  cnv_terminate       tx_name     gene_name
0    chr1  245012620      245157327  NM_001143943        EFCAB2
2    chr1  245012620      245157327     NM_004501        HNRNPU
4    chr1  245012620      245157327     NR_111907  LOC101928068
5    chr1  245012620      245157327     NR_132782      SNORA100
6    chr1  244995381      245096507  NM_001312871         COX20
8    chr1  244995381      245096507     NM_004501        HNRNPU
10   chr1  244995381      245096507     NR_132782      SNORA100
11  chr11   63452719       64290812  NM_001039469         MARK2
12  chr11   63452719       64290812  NM_001039496         TEX40
13  chr11   63452719       64290812  NM_001128612        NUDT22
15  chr11   63452719       64290812  NM_001135208         FKBP2
16  chr11   63452719       64290812  NM_001144936      C11orf95
17  chr11   63452719       64290812  NM_001160393         TRPT1
18  chr11   63452719       64290812  NM_001170726        GPR137
21  chr11   63452719       64290812  NM_001243733         VEGFB
22  chr11   63452719       64290812  NM_001265591          RTN3
23  chr11   63452719       64290812  NM_001282450         ESRRA
24  chr11   63452719       64290812  NM_001282652         STIP1
25  chr11   63452719       64290812  NM_001286082       TRMT112
26  chr11   63452719       64290812  NM_001300800         NAA40
27  chr11   63452719       64290812  NM_001307981        DNAJC4
28  chr11   63452719       64290812  NM_001316314         PLCB3
29  chr11   63452719       64290812  NM_001317090         KCNK4
30  chr11   63452719       64290812  NM_001318361       RPS6KA4
31  chr11   63452719       64290812     NM_004074         COX8A
36  chr11   63452719       64290812     NM_013280         FLRT1
37  chr11   63452719       64290812     NM_014067       MACROD1
41  chr11   63452719       64290812     NM_031471        FERMT3
43  chr11   63452719       64290812     NM_032251       CCDC88B
44  chr11   63452719       64290812     NM_032989           BAD
..    ...        ...            ...           ...           ...
51  chr11   63452719       64290812     NR_003089         OTUB1
52  chr11   63452719       64290812     NR_031602       MIR1237
53  chr11   63452719       64290812     NR_073177  LOC100996455
54  chr11   63452719       64290812     NR_106977       MIR7155
57  chr11   63452719       64290812     NR_133662   KCNK4-TEX40
58  chr11   63452719       64290812     NR_135086  LOC105369340
60  chr14   21791974       21940776  NM_001163380         RAB2B
61  chr14   21791974       21940776  NM_001170629          CHD8
62  chr14   21791974       21940776     NM_007192       SUPT16H
63  chr14   21791974       21940776     NM_020366       RPGRIP1
66  chr14   21791974       21940776     NR_002916        SNORD8
67  chr14   21791974       21940776     NR_003029        SNORD9
68  chr15   28462252       28622563     NM_004667         HERC2
69  chr16   18321068       18786022  NM_001004060         NOMO2
70  chr16   18321068       18786022  NM_001282511        NPIPA8
71  chr16   18321068       18786022     NR_003569       ABCC6P1
72  chr16   18321068       18786022     NR_036140     MIR3179-1
73  chr16   18321068       18786022     NR_036142     MIR3180-2
74  chr16   18321068       18786022     NR_036144     MIR3180-3
75  chr16   18321068       18786022     NR_037442     MIR3670-1
76  chr16   18321068       18786022     NR_103772  LOC100288162
77  chr16   18321068       18786022     NR_106971     MIR6511A4
78  chr16   18321068       18786022     NR_107060     MIR6770-2
79  chr19   33750925       33872349  NM_001252296         CEBPG
80  chr19   33750925       33872349  NM_001285829         CEBPA
82  chr19   33750925       33872349     NR_026887     CEBPA-AS1
83   chr7  110635338      110773021  NM_001099658         LRRN3
84   chr7  110635338      110773021  NM_001244606        IMMP2L
86   chr8  143422614      143561479  NM_001291931       TSNARE1
87   chr8  143422614      143561479     NM_001702        ADGRB1

[64 rows x 5 columns]]}
In [16]:
#block_counts[idx][0] for idx in sample_idx
[pd.concat(del_sample[item]) for item in ["case", "ctrl"]][0]
#for item, value in del_sample.items() for item in ("case", "ctrl"):
#    values = pd.concat(value)
#    print (item)
Out[16]:
chrom cnv_start cnv_terminate tx_name gene_name
0 chr1 145310117.0 145575524.0 NM_001039888 ANKRD34A
1 chr1 145310117.0 145575524.0 NM_001184795 PEX11B
2 chr1 145310117.0 145575524.0 NM_001277444 NBPF9
3 chr1 145310117.0 145575524.0 NM_001278267 NBPF20
4 chr1 145310117.0 145575524.0 NM_001280799 ANKRD35
5 chr1 145310117.0 145575524.0 NM_001302371 NBPF10
6 chr1 145310117.0 145575524.0 NM_001303040 ITGA10
7 chr1 145310117.0 145575524.0 NM_001313972 TXNIP
9 chr1 145310117.0 145575524.0 NM_005105 RBM8A
11 chr1 145310117.0 145575524.0 NM_032305 POLR3GL
12 chr1 145310117.0 145575524.0 NM_145277 HFE2
13 chr1 145310117.0 145575524.0 NM_153713 LIX1L
14 chr1 145310117.0 145575524.0 NR_002328 GNRHR2
18 chr1 145310117.0 145575524.0 NR_104217 NBPF25P
19 chr1 145310117.0 145575524.0 NR_125967 LOC101928979
20 chr14 21826668.0 22059063.0 NM_001005465 OR10G3
21 chr14 21826668.0 22059063.0 NM_001163380 RAB2B
22 chr14 21826668.0 22059063.0 NM_001170629 CHD8
23 chr14 21826668.0 22059063.0 NM_001303523 TOX4
24 chr14 21826668.0 22059063.0 NM_007192 SUPT16H
25 chr14 21826668.0 22059063.0 NM_019852 METTL3
28 chr14 21826668.0 22059063.0 NR_002916 SNORD8
29 chr14 21826668.0 22059063.0 NR_003029 SNORD9
30 chr14 21826668.0 22059063.0 NR_111966 SALL2
32 chr20 14706681.0 15115546.0 NM_080676 MACROD2
33 chr20 14706681.0 15115546.0 NR_037841 MACROD2-AS1
0 chr1 143585018.0 144510243.0 NM_001123068 PPIAL4G
1 chr1 143585018.0 144510243.0 NM_001135789 PPIAL4C
2 chr1 143585018.0 144510243.0 NM_001278267 NBPF20
3 chr1 143585018.0 144510243.0 NM_001287385 FAM72C
... ... ... ... ... ...
51 chr11 63452719.0 64290812.0 NR_003089 OTUB1
52 chr11 63452719.0 64290812.0 NR_031602 MIR1237
53 chr11 63452719.0 64290812.0 NR_073177 LOC100996455
54 chr11 63452719.0 64290812.0 NR_106977 MIR7155
57 chr11 63452719.0 64290812.0 NR_133662 KCNK4-TEX40
58 chr11 63452719.0 64290812.0 NR_135086 LOC105369340
60 chr14 21791974.0 21940776.0 NM_001163380 RAB2B
61 chr14 21791974.0 21940776.0 NM_001170629 CHD8
62 chr14 21791974.0 21940776.0 NM_007192 SUPT16H
63 chr14 21791974.0 21940776.0 NM_020366 RPGRIP1
66 chr14 21791974.0 21940776.0 NR_002916 SNORD8
67 chr14 21791974.0 21940776.0 NR_003029 SNORD9
68 chr15 28462252.0 28622563.0 NM_004667 HERC2
69 chr16 18321068.0 18786022.0 NM_001004060 NOMO2
70 chr16 18321068.0 18786022.0 NM_001282511 NPIPA8
71 chr16 18321068.0 18786022.0 NR_003569 ABCC6P1
72 chr16 18321068.0 18786022.0 NR_036140 MIR3179-1
73 chr16 18321068.0 18786022.0 NR_036142 MIR3180-2
74 chr16 18321068.0 18786022.0 NR_036144 MIR3180-3
75 chr16 18321068.0 18786022.0 NR_037442 MIR3670-1
76 chr16 18321068.0 18786022.0 NR_103772 LOC100288162
77 chr16 18321068.0 18786022.0 NR_106971 MIR6511A4
78 chr16 18321068.0 18786022.0 NR_107060 MIR6770-2
79 chr19 33750925.0 33872349.0 NM_001252296 CEBPG
80 chr19 33750925.0 33872349.0 NM_001285829 CEBPA
82 chr19 33750925.0 33872349.0 NR_026887 CEBPA-AS1
83 chr7 110635338.0 110773021.0 NM_001099658 LRRN3
84 chr7 110635338.0 110773021.0 NM_001244606 IMMP2L
86 chr8 143422614.0 143561479.0 NM_001291931 TSNARE1
87 chr8 143422614.0 143561479.0 NM_001702 ADGRB1

63807 rows × 5 columns

In [ ]:
def get_stats_table(gene_df):
    gene_table = {}
    for item in ["case", "ctrl"]:
        gene = pd.concat(gene_df[item])
        query = '''
        SELECT chrom, gene_name, count(gene_name)
        FROM gene
        GROUP BY chrom, gene_name
        ORDER BY count(gene_name) DESC
        '''
        gene_table[item] = sqldf(query)
    gene_table = pd.merge(gene_table["case"], gene_table["ctrl"], how = "outer", on = ["chrom", "gene_name"])
    gene_table["count(gene_name)_x"].fillna(0, inplace=True)
    gene_table["count(gene_name)_y"].fillna(0, inplace=True)
    gene_table = gene_table.rename(columns={"count(gene_name)_x":"n_case_gene", "count(gene_name)_y":"n_ctrl_gene"})
    n_gene_case = sum(gene_table["n_case_gene"])
    n_gene_ctrl = sum(gene_table["n_ctrl_gene"])
    gene_table["n_case_nogene"] = n_gene_case - gene_table["n_case_gene"]
    gene_table["n_ctrl_nogene"] = n_gene_ctrl - gene_table["n_ctrl_gene"]
    gene_table = gene_table[["gene_name", "n_case_gene", "n_ctrl_gene", "n_case_nogene", "n_ctrl_nogene"]]
    return gene_table

def get_stats(gene_table, num):
    stats_table = [(pvalue(row["n_case_gene"], row["n_ctrl_gene"], row["n_case_nogene"], row["n_ctrl_nogene"]), 
                row["gene_name"]) for idx, row in gene_table.iterrows()]
    oddsratio_table = [(stats.fisher_exact([[row["n_case_gene"], row["n_ctrl_gene"]], 
                                            [row["n_case_nogene"], row["n_ctrl_nogene"]]])[0], row["gene_name"]) 
                       for idx, row in gene_table.iterrows()]
    stats_table = sorted(stats_table, reverse=True, key = lambda x: -np.log10(x[0].two_tail))
    oddsratio_table = sorted(oddsratio_table, reverse=True, key = lambda x: x[0] if np.isfinite(x[0]) else -x[0])
    top_logp_2side = [-np.log10(x[0].two_tail) for x in stats_table[:num]]
    top_gene_list = [x[1] for x in stats_table[:num]]
    top_OR_2side = [x[0] for x in oddsratio_table[:num]]
    top_OR_gene = [x[1] for x in oddsratio_table[:num]]
    stats_table = {"top_logp_2side": top_logp_2side, "top_gene_list": top_gene_list, 
            "top_OR_2side": top_OR_2side, "top_OR_gene": top_OR_gene}
    return stats_table

del_sample_gene = get_stats_table(del_sample)
del_stats_table = get_stats(del_sample_gene, num=35)
print (del_stats_table)
dup_sample_gene = get_stats_table(dup_sample)
dup_stats_table = get_stats(dup_sample_gene, num=50)
In [154]:
sns.set(style="whitegrid")
sns.set_color_codes("pastel")
f, ax = plt.subplots(figsize=(8, 8))
p_df = pd.DataFrame({"logp 2side": del_stats_table["top_logp_2side"], "gene name":del_stats_table["top_gene_list"]})
plot = sns.barplot(x="logp 2side", y="gene name", data=p_df, color="b")
#print (plot)
In [155]:
sns.set(style="whitegrid")
sns.set_color_codes("pastel")
f, ax = plt.subplots(figsize=(8, 12.5))
p_df = pd.DataFrame({"logp 2side": dup_stats_table["top_logp_2side"], "gene name":dup_stats_table["top_gene_list"]})
plot = sns.barplot(x="logp 2side", y="gene name", data=p_df, color="r")
In [ ]: